<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 17:30:28"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396673" ref_strand="+" ref_description="SGN-E396673 [TUS-43-D11]">
      <seq>aagccttgatttaggattggattgcaagttcgaaacaacgccaactgaatgttcaccagtgaattatagtccggagaatagcttagatgatattcaagctaataaggatgaaaatgaagagacgtcgaataaaaatctcaagacgatgagaaataatggagatggagatgatgtttcgcaacaaaaccctactaaaagagctagggtttctgttagagtcagatgtgatgcccctacgatgaatgatggatgccaatggagaaaatatggtcaaaaaatagcaaaaggaaatccatgccctatagcttactatcgttgcaccgtagcaccaaattgcccagttagaaagcaggttcaaagatgtgccgaagacatgtcaatattgatcaccacatatgaaggaacacacaaccatacccttcctctttcagccaccgcaatggcttctaccacctcagcggccgctagcatgctgttatccggttcatctaattcatcagacccaaacccacaagtaactgccaccaccaccactacccctactaccactacttctgccaatatcaacggactcaacttctatctctctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5502" stop="7370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5802" g_stop="6039" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6040" i_stop="6190" i_length="151">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6191" g_stop="6304" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="352" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6305" i_stop="6831" i_length="527">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6832" g_stop="7070" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="591" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E396673" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5802" e_stop="6039"/>
          <exon e_start="6191" e_stop="6304"/>
          <exon e_start="6832" e_stop="7070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCTTGATTTAGGATTGGATTGCAAGTTCGAAACAACGCCAACTGAATGTTCACCAGTGAATTATAGTCCGGAGAATAGCTTAGATGATATTCAAGCTAATAAGGATGAAAATGAAGAGACGTCGAATAAAAATCTCAAGACGATGAGAAATAATGGAGATGGAGATGATGTTTCGCAACAAAACCCTACTAAAAGAGCTAGGGTTTCTGTTAGAGTCAGATGTGATGCCCCTACGGTAAGGATTTTTCAATTTTTTTGTATACATGCATGCATATTGTGATATTAATTATAATTAAGTAAAGAATGCAATCTAATCTATGTATTTAATTATGTTAATAATGATTTTTCTTTAATTTCAAATTTTTTTTGGTAATATTATTGATCAGATGAATGATGGATGCCAATGGAGAAAATATGGTCAAAAAATAGCAAAAGGAAATCCATGCCCTAGAGCTTACTATCGTTGCACCGTAGCACCAAATTGCCCAGTTAGAAAGCAGGTAATATATAGAGGGATGATTGAAATTCCTTCATTCTTAATTAGATATGTCTCGAGTTTGAATACAATGCATGAATCCGAAGTCAATCAAGCTCTAGAACACCAAATAAAAAGTTATGTTCTATAGTAGCTTATTTAATCCTCATAGATTAATTTAACTTATTTATTAAAAGTGTAAAATCTTATTCCACTTTTTATAGTAATTTAAGTTAATTAGTTTTGTTTTATTCATCATAGTTTATCTCGATACAATTTTTTTATAAAAATAATAGAAGATTTTTAATATTTGTGATCTCAAATACACTTTTATATTTGTGTGATTATAAATTTTTTAAAAGCGTCTTATTAAGAAAATATGCATAAGATGTAATAGTAAAGAAGTAGTATCAAATATAGTGAAAAGGACTAAAAGTATTACTCATTTTTAGGCGATCTGATAAATTAAATTTTATAATGAATCAATTTATTACTAGTACTAGTACTACATTATCATGGTAATGATACAATTGTTGCTTGTTGGTTTTGTAGGTTCAAAGATGTGCCGAAGACATGTCAATATTGATCACCACATATGAAGGAACACACAACCATACCCTTCCTCTTTCAGCCACCGCAATGGCTTCTACCACCTCAGCGGCCGCTAGCATGCTGTTATCCGGTTCATCTAATTCATCAGACCCAAACCCACAAGTAACTGCCACCACCACCACTACCCCTACTACCACTACTTCTGCCAATATCAACGGACTCAACTTCTATCTCTCTGA</genome_strand>
        <mrna_strand>AAGCCTTGATTTAGGATTGGATTGCAAGTTCGAAACAACGCCAACTGAATGTTCACCAGTGAATTATAGTCCGGAGAATAGCTTAGATGATATTCAAGCTAATAAGGATGAAAATGAAGAGACGTCGAATAAAAATCTCAAGACGATGAGAAATAATGGAGATGGAGATGATGTTTCGCAACAAAACCCTACTAAAAGAGCTAGGGTTTCTGTTAGAGTCAGATGTGATGCCCCTACG.......................................................................................................................................................ATGAATGATGGATGCCAATGGAGAAAATATGGTCAAAAAATAGCAAAAGGAAATCCATGCCCTATAGCTTACTATCGTTGCACCGTAGCACCAAATTGCCCAGTTAGAAAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGATGTGCCGAAGACATGTCAATATTGATCACCACATATGAAGGAACACACAACCATACCCTTCCTCTTTCAGCCACCGCAATGGCTTCTACCACCTCAGCGGCCGCTAGCATGCTGTTATCCGGTTCATCTAATTCATCAGACCCAAACCCACAAGTAACTGCCACCACCACCACTACCCCTACTACCACTACTTCTGCCAATATCAACGGACTCAACTTCTATCTCTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213574" ref_strand="+" ref_description="SGN-E213574 [cLEC-71-J8]">
      <seq>agccttgatttaggattggattgcaagttcgaaacaacgccaactgaatgttcaccagtgaattatagtccggagaatagcttagatgatattcaagctaataaggatgaaaatgaagagacgtcgaataaaaatctcaagacgatgagaaataatggagatggagatgatgtttcgcaacaaaaccctactaaaagagctagggtttctgttagagtcagatgtgatgcccctacgatgaatgatggatgccaatggagaaaatatggtcaaaaaatagcaaaaggaaatccatgccctagagcttactatcgttgcaccgtagcaccaaattgcccagttagaaagcaggttcaaagatgtgccgaagacatgtcaatattgatcaccacatatgaaggaacacacaaccatacccttcctctttcagccaccgcaatggcttctaccacctcagcggccgctagcatgctgttatccggttcatctaattcatcagacccaaacccacaagtaactgccaccaccaccactacccctactaccactacttctgccaatatcaacggactcaacttctatctctctgatacctcaaaacatcataaatcgccatattactttcctaattcatccatctcagcatccgcacctaattccctccctacattacactcgatttgacttccacctcgtcctcgtccccgtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5503" stop="7491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5803" g_stop="6039" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6040" i_stop="6190" i_length="151">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6191" g_stop="6304" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="351" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6305" i_stop="6831" i_length="527">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6832" g_stop="7191" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="710" r_length="359" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E213574" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5803" e_stop="6039"/>
          <exon e_start="6191" e_stop="6304"/>
          <exon e_start="6832" e_stop="7191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTTGATTTAGGATTGGATTGCAAGTTCGAAACAACGCCAACTGAATGTTCACCAGTGAATTATAGTCCGGAGAATAGCTTAGATGATATTCAAGCTAATAAGGATGAAAATGAAGAGACGTCGAATAAAAATCTCAAGACGATGAGAAATAATGGAGATGGAGATGATGTTTCGCAACAAAACCCTACTAAAAGAGCTAGGGTTTCTGTTAGAGTCAGATGTGATGCCCCTACGGTAAGGATTTTTCAATTTTTTTGTATACATGCATGCATATTGTGATATTAATTATAATTAAGTAAAGAATGCAATCTAATCTATGTATTTAATTATGTTAATAATGATTTTTCTTTAATTTCAAATTTTTTTTGGTAATATTATTGATCAGATGAATGATGGATGCCAATGGAGAAAATATGGTCAAAAAATAGCAAAAGGAAATCCATGCCCTAGAGCTTACTATCGTTGCACCGTAGCACCAAATTGCCCAGTTAGAAAGCAGGTAATATATAGAGGGATGATTGAAATTCCTTCATTCTTAATTAGATATGTCTCGAGTTTGAATACAATGCATGAATCCGAAGTCAATCAAGCTCTAGAACACCAAATAAAAAGTTATGTTCTATAGTAGCTTATTTAATCCTCATAGATTAATTTAACTTATTTATTAAAAGTGTAAAATCTTATTCCACTTTTTATAGTAATTTAAGTTAATTAGTTTTGTTTTATTCATCATAGTTTATCTCGATACAATTTTTTTATAAAAATAATAGAAGATTTTTAATATTTGTGATCTCAAATACACTTTTATATTTGTGTGATTATAAATTTTTTAAAAGCGTCTTATTAAGAAAATATGCATAAGATGTAATAGTAAAGAAGTAGTATCAAATATAGTGAAAAGGACTAAAAGTATTACTCATTTTTAGGCGATCTGATAAATTAAATTTTATAATGAATCAATTTATTACTAGTACTAGTACTACATTATCATGGTAATGATACAATTGTTGCTTGTTGGTTTTGTAGGTTCAAAGATGTGCCGAAGACATGTCAATATTGATCACCACATATGAAGGAACACACAACCATACCCTTCCTCTTTCAGCCACCGCAATGGCTTCTACCACCTCAGCGGCCGCTAGCATGCTGTTATCCGGTTCATCTAATTCATCAGACCCAAACCCACAAGTAACTGCCACCACCACCACTACCCCTACTACCACTACTTCTGCCAATATCAACGGACTCAACTTCTATCTCTCTGATACCTCAAAACATCATAAATCGCCATATTACTTTCCTAATTCATCCATCTCAGCATCCGCACCTAATTCCCTCCCTACAATTACACTCGATTTGACTTCCACCTCGTCCTCGTCCCCGTCC</genome_strand>
        <mrna_strand>AGCCTTGATTTAGGATTGGATTGCAAGTTCGAAACAACGCCAACTGAATGTTCACCAGTGAATTATAGTCCGGAGAATAGCTTAGATGATATTCAAGCTAATAAGGATGAAAATGAAGAGACGTCGAATAAAAATCTCAAGACGATGAGAAATAATGGAGATGGAGATGATGTTTCGCAACAAAACCCTACTAAAAGAGCTAGGGTTTCTGTTAGAGTCAGATGTGATGCCCCTACG.......................................................................................................................................................ATGAATGATGGATGCCAATGGAGAAAATATGGTCAAAAAATAGCAAAAGGAAATCCATGCCCTAGAGCTTACTATCGTTGCACCGTAGCACCAAATTGCCCAGTTAGAAAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGATGTGCCGAAGACATGTCAATATTGATCACCACATATGAAGGAACACACAACCATACCCTTCCTCTTTCAGCCACCGCAATGGCTTCTACCACCTCAGCGGCCGCTAGCATGCTGTTATCCGGTTCATCTAATTCATCAGACCCAAACCCACAAGTAACTGCCACCACCACCACTACCCCTACTACCACTACTTCTGCCAATATCAACGGACTCAACTTCTATCTCTCTGATACCTCAAAACATCATAAATCGCCATATTACTTTCCTAATTCATCCATCTCAGCATCCGCACCTAATTCCCTCCCTAC-ATTACACTCGATTTGACTTCCACCTCGTCCTCGTCCCCGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206407" ref_strand="+" ref_description="SGN-E206407 [cLEC-23-P16]">
      <seq>agccttgatttaggattggattgcaaggtcgaaacaacgccaactgaatgttcaccagtgaattatagtccggagaatagcttagatgatattcaagctaataaggatgaaaatgaagagacgtcgaataaaaatctcaagacgatgagaaataatggagatggagatgatgtttcgcaacaaaaccctactaaaagagctagggtttctgttagaggcacatgtgatgcccctacgattaatgatggatgccaatggaaaaaatatggtcaaaaaataacaaaaggaaatccatgccctagagcttactatcgttgcaccgtagcaccaaattgtccagttagaaagcacgttcaaagatgtgccgaagacatgtcaatattgatcaccacatatgaaggaacacacaaccataccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5503" stop="7199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5803" g_stop="6039" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6040" i_stop="6190" i_length="151">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6191" g_stop="6304" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="351" r_length="114" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6305" i_stop="6831" i_length="527">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6832" g_stop="6899" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="419" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E206407" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5803" e_stop="6039"/>
          <exon e_start="6191" e_stop="6304"/>
          <exon e_start="6832" e_stop="6899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTTGATTTAGGATTGGATTGCAAGTTCGAAACAACGCCAACTGAATGTTCACCAGTGAATTATAGTCCGGAGAATAGCTTAGATGATATTCAAGCTAATAAGGATGAAAATGAAGAGACGTCGAATAAAAATCTCAAGACGATGAGAAATAATGGAGATGGAGATGATGTTTCGCAACAAAACCCTACTAAAAGAGCTAGGGTTTCTGTTAGAGTCAGATGTGATGCCCCTACGGTAAGGATTTTTCAATTTTTTTGTATACATGCATGCATATTGTGATATTAATTATAATTAAGTAAAGAATGCAATCTAATCTATGTATTTAATTATGTTAATAATGATTTTTCTTTAATTTCAAATTTTTTTTGGTAATATTATTGATCAGATGAATGATGGATGCCAATGGAGAAAATATGGTCAAAAAATAGCAAAAGGAAATCCATGCCCTAGAGCTTACTATCGTTGCACCGTAGCACCAAATTGCCCAGTTAGAAAGCAGGTAATATATAGAGGGATGATTGAAATTCCTTCATTCTTAATTAGATATGTCTCGAGTTTGAATACAATGCATGAATCCGAAGTCAATCAAGCTCTAGAACACCAAATAAAAAGTTATGTTCTATAGTAGCTTATTTAATCCTCATAGATTAATTTAACTTATTTATTAAAAGTGTAAAATCTTATTCCACTTTTTATAGTAATTTAAGTTAATTAGTTTTGTTTTATTCATCATAGTTTATCTCGATACAATTTTTTTATAAAAATAATAGAAGATTTTTAATATTTGTGATCTCAAATACACTTTTATATTTGTGTGATTATAAATTTTTTAAAAGCGTCTTATTAAGAAAATATGCATAAGATGTAATAGTAAAGAAGTAGTATCAAATATAGTGAAAAGGACTAAAAGTATTACTCATTTTTAGGCGATCTGATAAATTAAATTTTATAATGAATCAATTTATTACTAGTACTAGTACTACATTATCATGGTAATGATACAATTGTTGCTTGTTGGTTTTGTAGGTTCAAAGATGTGCCGAAGACATGTCAATATTGATCACCACATATGAAGGAACACACAACCATACCCT</genome_strand>
        <mrna_strand>AGCCTTGATTTAGGATTGGATTGCAAGGTCGAAACAACGCCAACTGAATGTTCACCAGTGAATTATAGTCCGGAGAATAGCTTAGATGATATTCAAGCTAATAAGGATGAAAATGAAGAGACGTCGAATAAAAATCTCAAGACGATGAGAAATAATGGAGATGGAGATGATGTTTCGCAACAAAACCCTACTAAAAGAGCTAGGGTTTCTGTTAGAGGCACATGTGATGCCCCTACG.......................................................................................................................................................ATTAATGATGGATGCCAATGGAAAAAATATGGTCAAAAAATAACAAAAGGAAATCCATGCCCTAGAGCTTACTATCGTTGCACCGTAGCACCAAATTGTCCAGTTAGAAAGCAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGATGTGCCGAAGACATGTCAATATTGATCACCACATATGAAGGAACACACAACCATACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211245" ref_strand="+" ref_description="SGN-E211245 [cLEC-70-J10]">
      <seq>cgaataaaaatctcaagacgatgagaaataatggagatggagatgatgtttcgcaacaaaaccctactaaaagagctagggtttctgttagagtcagatgtgatgcccctacgatgaatgatggatgccaatggagaaaatatggtcaaaaaatagcaaaaggaaatccatgccctagagcttactatcgttgcaccgtagcaccaaattgcccagttagaaagcaggttcaaagatgtgccgaagacatgtcaatattgatcaccacatatgaaggaacacacaaccatacccttcctctttcagccaccgcaatggcttctaccacctcagcggccgctagcatgctgttatccggttcatctaattcatcagacccaaacccacaagtaactgccaccaccaccactacccctactaccactacttctgccaatatcaacggactcaacttctatctctctgatacctcaaaacatcataaatcgccatattactttcctaattcatccatctcagcatccgcacctaattccctccctacaattacactcgatttgacttccacctcgtcctcgtccccggtctccttatctcatctaaacagaatgactcagaatttttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5627" stop="7529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5927" g_stop="6039" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6040" i_stop="6190" i_length="151">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6191" g_stop="6304" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="227" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6305" i_stop="6831" i_length="527">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6832" g_stop="7230" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="626" r_length="399" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E211245" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5927" e_stop="6039"/>
          <exon e_start="6191" e_stop="6304"/>
          <exon e_start="6832" e_stop="7230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAATAAAAATCTCAAGACGATGAGAAATAATGGAGATGGAGATGATGTTTCGCAACAAAACCCTACTAAAAGAGCTAGGGTTTCTGTTAGAGTCAGATGTGATGCCCCTACGGTAAGGATTTTTCAATTTTTTTGTATACATGCATGCATATTGTGATATTAATTATAATTAAGTAAAGAATGCAATCTAATCTATGTATTTAATTATGTTAATAATGATTTTTCTTTAATTTCAAATTTTTTTTGGTAATATTATTGATCAGATGAATGATGGATGCCAATGGAGAAAATATGGTCAAAAAATAGCAAAAGGAAATCCATGCCCTAGAGCTTACTATCGTTGCACCGTAGCACCAAATTGCCCAGTTAGAAAGCAGGTAATATATAGAGGGATGATTGAAATTCCTTCATTCTTAATTAGATATGTCTCGAGTTTGAATACAATGCATGAATCCGAAGTCAATCAAGCTCTAGAACACCAAATAAAAAGTTATGTTCTATAGTAGCTTATTTAATCCTCATAGATTAATTTAACTTATTTATTAAAAGTGTAAAATCTTATTCCACTTTTTATAGTAATTTAAGTTAATTAGTTTTGTTTTATTCATCATAGTTTATCTCGATACAATTTTTTTATAAAAATAATAGAAGATTTTTAATATTTGTGATCTCAAATACACTTTTATATTTGTGTGATTATAAATTTTTTAAAAGCGTCTTATTAAGAAAATATGCATAAGATGTAATAGTAAAGAAGTAGTATCAAATATAGTGAAAAGGACTAAAAGTATTACTCATTTTTAGGCGATCTGATAAATTAAATTTTATAATGAATCAATTTATTACTAGTACTAGTACTACATTATCATGGTAATGATACAATTGTTGCTTGTTGGTTTTGTAGGTTCAAAGATGTGCCGAAGACATGTCAATATTGATCACCACATATGAAGGAACACACAACCATACCCTTCCTCTTTCAGCCACCGCAATGGCTTCTACCACCTCAGCGGCCGCTAGCATGCTGTTATCCGGTTCATCTAATTCATCAGACCCAAACCCACAAGTAACTGCCACCACCACCACTACCCCTACTACCACTACTTCTGCCAATATCAACGGACTCAACTTCTATCTCTCTGATACCTCAAAACATCATAAATCGCCATATTACTTTCCTAATTCATCCATCTCAGCATCCGCACCTAATTCCCTCCCTACAATTACACTCGATTTGACTTCCACCTCGTCCTCGTCCCCGTCCTCCTTATCTCATCTAAACAGAATGACTCAGAATTTTCCT</genome_strand>
        <mrna_strand>CGAATAAAAATCTCAAGACGATGAGAAATAATGGAGATGGAGATGATGTTTCGCAACAAAACCCTACTAAAAGAGCTAGGGTTTCTGTTAGAGTCAGATGTGATGCCCCTACG.......................................................................................................................................................ATGAATGATGGATGCCAATGGAGAAAATATGGTCAAAAAATAGCAAAAGGAAATCCATGCCCTAGAGCTTACTATCGTTGCACCGTAGCACCAAATTGCCCAGTTAGAAAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGATGTGCCGAAGACATGTCAATATTGATCACCACATATGAAGGAACACACAACCATACCCTTCCTCTTTCAGCCACCGCAATGGCTTCTACCACCTCAGCGGCCGCTAGCATGCTGTTATCCGGTTCATCTAATTCATCAGACCCAAACCCACAAGTAACTGCCACCACCACCACTACCCCTACTACCACTACTTCTGCCAATATCAACGGACTCAACTTCTATCTCTCTGATACCTCAAAACATCATAAATCGCCATATTACTTTCCTAATTCATCCATCTCAGCATCCGCACCTAATTCCCTCCCTACAATTACACTCGATTTGACTTCCACCTCGTCCTCGTCCCCGGTCTCCTTATCTCATCTAAACAGAATGACTCAGAATTTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210490" ref_strand="+" ref_description="SGN-E210490 [cLEC-35-O4]">
      <seq>agagctagggtttctgttagagtcagatgtgatgcccctacgatgaatgatggatgccaatggagaaaatatggtcaaaaaatagcaaaaggaaatccatgccctagagcttactatcgttgcaccgtagcaccaaattgcccagttagaaagcaggttcaaagatgtgccgaagacatgtcaatattgatcaccacatatgaaggaacacacaaccatacccttcctctttcagccaccgcaatggcttctaccacctcagcggccgctagcatgctgttatccggttcatctaattcatcagacccaaacccacaagtaactgccaccaccaccactacccctactaccactacttctgccaatatcaacggactcaacttctatctctctgatacctcaaaacatcataaatcgccatattactttcctaattcatccatctcagcatccgcacctaattccctccctacaattacactcgatttgacttccacctcgtcctcgtccccgtcctccttatctcatctaaacagaatgactcagaattttcctcctagatataattacaataacaataattccaccacaaacctcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5698" stop="7575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5998" g_stop="6039" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6040" i_stop="6190" i_length="151">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6191" g_stop="6304" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="156" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6305" i_stop="6831" i_length="527">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6832" g_stop="7275" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="600" r_length="444" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E210490" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5998" e_stop="6039"/>
          <exon e_start="6191" e_stop="6304"/>
          <exon e_start="6832" e_stop="7275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTAGGGTTTCTGTTAGAGTCAGATGTGATGCCCCTACGGTAAGGATTTTTCAATTTTTTTGTATACATGCATGCATATTGTGATATTAATTATAATTAAGTAAAGAATGCAATCTAATCTATGTATTTAATTATGTTAATAATGATTTTTCTTTAATTTCAAATTTTTTTTGGTAATATTATTGATCAGATGAATGATGGATGCCAATGGAGAAAATATGGTCAAAAAATAGCAAAAGGAAATCCATGCCCTAGAGCTTACTATCGTTGCACCGTAGCACCAAATTGCCCAGTTAGAAAGCAGGTAATATATAGAGGGATGATTGAAATTCCTTCATTCTTAATTAGATATGTCTCGAGTTTGAATACAATGCATGAATCCGAAGTCAATCAAGCTCTAGAACACCAAATAAAAAGTTATGTTCTATAGTAGCTTATTTAATCCTCATAGATTAATTTAACTTATTTATTAAAAGTGTAAAATCTTATTCCACTTTTTATAGTAATTTAAGTTAATTAGTTTTGTTTTATTCATCATAGTTTATCTCGATACAATTTTTTTATAAAAATAATAGAAGATTTTTAATATTTGTGATCTCAAATACACTTTTATATTTGTGTGATTATAAATTTTTTAAAAGCGTCTTATTAAGAAAATATGCATAAGATGTAATAGTAAAGAAGTAGTATCAAATATAGTGAAAAGGACTAAAAGTATTACTCATTTTTAGGCGATCTGATAAATTAAATTTTATAATGAATCAATTTATTACTAGTACTAGTACTACATTATCATGGTAATGATACAATTGTTGCTTGTTGGTTTTGTAGGTTCAAAGATGTGCCGAAGACATGTCAATATTGATCACCACATATGAAGGAACACACAACCATACCCTTCCTCTTTCAGCCACCGCAATGGCTTCTACCACCTCAGCGGCCGCTAGCATGCTGTTATCCGGTTCATCTAATTCATCAGACCCAAACCCACAAGTAACTGCCACCACCACCACTACCCCTACTACCACTACTTCTGCCAATATCAACGGACTCAACTTCTATCTCTCTGATACCTCAAAACATCATAAATCGCCATATTACTTTCCTAATTCATCCATCTCAGCATCCGCACCTAATTCCCTCCCTACAATTACACTCGATTTGACTTCCACCTCGTCCTCGTCCCCGTCCTCCTTATCTCATCTAAACAGAATGACTCAGAATTTTCCTCCTAGATATAATTACAATAACAATAATTCCACCACAAACCTCAAT</genome_strand>
        <mrna_strand>AGAGCTAGGGTTTCTGTTAGAGTCAGATGTGATGCCCCTACG.......................................................................................................................................................ATGAATGATGGATGCCAATGGAGAAAATATGGTCAAAAAATAGCAAAAGGAAATCCATGCCCTAGAGCTTACTATCGTTGCACCGTAGCACCAAATTGCCCAGTTAGAAAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGATGTGCCGAAGACATGTCAATATTGATCACCACATATGAAGGAACACACAACCATACCCTTCCTCTTTCAGCCACCGCAATGGCTTCTACCACCTCAGCGGCCGCTAGCATGCTGTTATCCGGTTCATCTAATTCATCAGACCCAAACCCACAAGTAACTGCCACCACCACCACTACCCCTACTACCACTACTTCTGCCAATATCAACGGACTCAACTTCTATCTCTCTGATACCTCAAAACATCATAAATCGCCATATTACTTTCCTAATTCATCCATCTCAGCATCCGCACCTAATTCCCTCCCTACAATTACACTCGATTTGACTTCCACCTCGTCCTCGTCCCCGTCCTCCTTATCTCATCTAAACAGAATGACTCAGAATTTTCCTCCTAGATATAATTACAATAACAATAATTCCACCACAAACCTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544366" ref_strand="+" ref_description="SGN-E544366 [TUS-66-K15](-)">
      <seq>caagatcaagtcaagataacattttccaatcatatttacagaaaaatactacacaatcttctttaccaccagacacaattgcagctgcaaccaaagcaataacatcagacccaaattttcattccgcattagctgcagctcttacatcgatcattggaaattctccaattgaaaacaaatccgtccataatttaaatgttactgagccatttccaattttatccagtctcccttcaagctcaaatccgaataaatgttcgtcaagttttttaaataaaccaacctcttctgcttccgcgaataataataataatagtaatagtaatagtaatagtacacagcagcctgggaataatagcatggtgtttttcgggcaatcttctttttcgttaccattttcgacgtctaataagggtaaatctacctctcctggtgatagtaagtttgattgattaattttttttttcttcatgttttacctctgaaattgaactttgtagttagaaggattaatcatctgtatagtctgtagatatgctttagtgtcattaacacaattgacactttggaattagcatttgtaatttgttgttgttgattaacttgactatggttgtaagatttttgtacaaaatgtagattatttatttagtagatggcttatttgcttctttaaaaaaaaaaaaaaaaaaaaaaaaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7085" stop="8358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7385" g_stop="8058" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="675" polyA_stop="704"/>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E544366" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7385" e_stop="8058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATCAAGTCAAGATAACATTTTCCAATCATATTTACAGAAAAATACTACACAATCTTCTTTACCACCAGACACAATTGCAGCTGCAACCAAAGCAATAACATCAGACCCAAATTTTCATTCCGCATTAGCTGCAGCTCTTACATCGATCATTGGAAATTCTCCAATTGAAAACAAATCCGTCCATAATTTAAATGTTACTGAGCCATTTCCAATTTTATCCAGTCTCCCTTCAAGCTCAAATCCGAATAAATGTTCGTCAAGTTTTTTAAATAAACCAACCTCTTCTGCTTCCGCGAATAATAATAATAATAGTAATAGTAATAGTAATAGTACACAGCAGCCTGGGAATAATAGCATGGTGTTTTTCGGGCAATCTTCTTCTTCGTTACCATTTTCGACGTCTAATAAGGGTAAATCTACCTCTCCTGGTGATAGTAAGTTTGATTGATTAATTTTTTTTTTCTTCATGTTTTACCTCTGAAATTGAACTTTGTAGTTAGAAGGATTAATCATCTGTATAGTCTGTAGATATGCTTTAGTGTCATTAACACAATTGACACTTTGGAATTAGCATTTGTAATTTGTTGTTGTTGATTAACTTGACTATGGTTGTAAGATTTTTGTACAAAATGTAGATTATTTATTTAGTAGATGGCTTATTTGCTTCTTT</genome_strand>
        <mrna_strand>CAAGATCAAGTCAAGATAACATTTTCCAATCATATTTACAGAAAAATACTACACAATCTTCTTTACCACCAGACACAATTGCAGCTGCAACCAAAGCAATAACATCAGACCCAAATTTTCATTCCGCATTAGCTGCAGCTCTTACATCGATCATTGGAAATTCTCCAATTGAAAACAAATCCGTCCATAATTTAAATGTTACTGAGCCATTTCCAATTTTATCCAGTCTCCCTTCAAGCTCAAATCCGAATAAATGTTCGTCAAGTTTTTTAAATAAACCAACCTCTTCTGCTTCCGCGAATAATAATAATAATAGTAATAGTAATAGTAATAGTACACAGCAGCCTGGGAATAATAGCATGGTGTTTTTCGGGCAATCTTCTTTTTCGTTACCATTTTCGACGTCTAATAAGGGTAAATCTACCTCTCCTGGTGATAGTAAGTTTGATTGATTAATTTTTTTTTTCTTCATGTTTTACCTCTGAAATTGAACTTTGTAGTTAGAAGGATTAATCATCTGTATAGTCTGTAGATATGCTTTAGTGTCATTAACACAATTGACACTTTGGAATTAGCATTTGTAATTTGTTGTTGTTGATTAACTTGACTATGGTTGTAAGATTTTTGTACAAAATGTAGATTATTTATTTAGTAGATGGCTTATTTGCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396672" ref_strand="+" ref_description="SGN-E396672 [TUS-43-D11](-)">
      <seq>accaaagcaataacatcagacccaaattttcattccgcattagtggcagctcttacatcgatcattggaaattctccaattgaaaacaaatccgtccataatttaaatgttactgagccatttccaattttatccagtctcccttcaagctcaaatccgaataaatgttcgtcaagttttttaaataaaccaaccttttctgcttccgcgaataataataataatagtaatagtaatagtaatagtacacagcagcctgggaataatagcatggtgtttttcgggcaattttttttttcgttaccattttcgacgtctaataagggtaaatctacctctcctggtgatagtaagtttgattgattaattttttttttcttcatgttttacctctgaaattgaactttgtagttagaaggattaatcatctgtatagtctgtagatatgctttagtgtcattaacacaattgacactttggaattagcatttgtaatttgttgttgttgattaaatgtgactatggttgtaagatttttgtacaaaatgtagattatttatttataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7174" stop="8340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7474" g_stop="8035" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="565" polyA_stop="575"/>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E396672" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7474" e_stop="8035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAGCAATAACATCAGACCCAAATTTTCATTCCGCATTAGCTGCAGCTCTTACATCGATCATTGGAAATTCTCCAATTGAAAACAAATCCGTCCATAATTTAAATGTTACTGAGCCATTTCCAATTTTATCCAGTCTCCCTTCAAGCTCAAATCCGAATAAATGTTCGTCAAGTTTTTTAAATAAACCAACCTCTTCTGCTTCCGCGAATAATAATAATAATAGTAATAGTAATAGTAATAGTACACAGCAGCCTGGGAATAATAGCATGGTGTTTTTCGGGCAATCTTCTTCTTCGTTACCATTTTCGACGTCTAATAAGGGTAAATCTACCTCTCCTGGTGATAGTAAGTTTGATTGATTAATTTTTTTTTTCTTCATGTTTTACCTCTGAAATTGAACTTTGTAGTTAGAAGGATTAATCATCTGTATAGTCTGTAGATATGCTTTAGTGTCATTAACACAATTGACACTTTGGAATTAGCATTTGTAATTTGTTGTTGTTGATTAACT-TGACTATGGTTGTAAGATTTTTGTACAAAATGTAGATTATTTATTTA</genome_strand>
        <mrna_strand>ACCAAAGCAATAACATCAGACCCAAATTTTCATTCCGCATTAGTGGCAGCTCTTACATCGATCATTGGAAATTCTCCAATTGAAAACAAATCCGTCCATAATTTAAATGTTACTGAGCCATTTCCAATTTTATCCAGTCTCCCTTCAAGCTCAAATCCGAATAAATGTTCGTCAAGTTTTTTAAATAAACCAACCTTTTCTGCTTCCGCGAATAATAATAATAATAGTAATAGTAATAGTAATAGTACACAGCAGCCTGGGAATAATAGCATGGTGTTTTTCGGGCAATTTTTTTTTTCGTTACCATTTTCGACGTCTAATAAGGGTAAATCTACCTCTCCTGGTGATAGTAAGTTTGATTGATTAATTTTTTTTTTCTTCATGTTTTACCTCTGAAATTGAACTTTGTAGTTAGAAGGATTAATCATCTGTATAGTCTGTAGATATGCTTTAGTGTCATTAACACAATTGACACTTTGGAATTAGCATTTGTAATTTGTTGTTGTTGATTAAATGTGACTATGGTTGTAAGATTTTTGTACAAAATGTAGATTATTTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292580" ref_strand="+" ref_description="SGN-E292580 [cLET-16-D10]">
      <seq>tgcgaactccaggggcagctacgagagaacacaaagcacaggaccttagctcggaaccctacctcaccgccttgttaccgccgtattggtggttacaatgtcgactccagctagaaagaggctgatgagggatttcaagaggttgcagcaggaccctcctgctggtattagtggtgcacctcaagacaacaacattatgctttggaatgccgtgatatttggtcctgatgacactccttgggatggtggtacgttcaagttgactcttcaattctctgaggattaccccaacaagccaccaacagtgcgggttgtttctcgcatgtttcatcctaatatttatgcagatggaagtatatgtttggatattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10585" stop="14222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10885" g_stop="10972" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10973" i_stop="12977" i_length="2005">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12978" g_stop="13111" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="222" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13112" i_stop="13229" i_length="118">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13230" g_stop="13255" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="248" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13256" i_stop="13798" i_length="543">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13799" g_stop="13888" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="338" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13889" i_stop="13980" i_length="92">
            <donor d_prob="0.829" d_score="0.98"/>
            <acceptor a_prob="0.624" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13981" g_stop="14014" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="372" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E292580" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10885" e_stop="10972"/>
          <exon e_start="12978" e_stop="13111"/>
          <exon e_start="13230" e_stop="13255"/>
          <exon e_start="13799" e_stop="13888"/>
          <exon e_start="13981" e_stop="14014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGAACTCCAGGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTGGTAAGTCCTTTGATTTTATATCTTCAATTTCCGATGGATCTTTGGAGTTCAAGGAAACTGGACAGGAAACTGATCTTTTGTTAAAAGCGAAAGCGGTTAAATTGGATAATTCTAATTTAGTTTGGAGAGTGTTTAAGAATTTTATGTGATTGTGCTTTTGCGACAATTAGCGAGAAGTTTTTGATCTTCAGTAAATAGTGTTATATTAGGGGAATTGTATGTGCGAGCCCTAATTCATGTGTGCTACAGTTGATTATTGTTATTTATTGTTCTGGAATTTGAGCTTTGTTACTTGATTGAGATGATCATAATTAGATCATGAGTTAAGCCAAATGAGAACTTGATTTATACCTGGATGACTGTGTTAAAGTGATATAAACAACTTTTACATACTTTTAATCCTGAAGTGGTGTTTAGAACTAAAATTTTTGACTTAGGTCATAAGTTTGAACCATGCACCAAGCGAATTAAAGTGCAGTATTTAAGTGGAGGAGGGTAGAGGGCTGGGCTCATCATCCCCAAGTTTCAAAGTGCGTAAGGGTTGGCTCTAGACAGATTTTATGGGTCATTAAATATAATAAAGGGCAAACAGAAAAAGCTCAATAGTAGTTCTCTTTTGTTGGGTTTGTTAACTAGTACTCGAGCATGTATTGTAGCATGTGTATCTCTTGCAAATTAGTATTAATGTTTTAAAATGATATAAAATATTAAAGTATGTATGTGATGGAAATCATAGGAGAAAAATACAAGTGCGGATTGATGAATGATTAGCCTATTGGACTGATATTTATTGTCATCGCAAAGCGCTAACGCCATCGCCGAAATGGTTTCTTTGGGGAGAAAAAGGTTTCCTTTTGTACCTTCTTCTAATATCGTTGGACCATGATAGTGAGTGGATGAAGCAGAAATTACCATTTGCGTTGAATCCATGAATAAAAAAAAGTAAAATTACAAGGATAGCAAGTTAATAAGGAAGAGAAACAAATAAAATTAAGGCGGACTGGCTTGGGAGTCTCTTGTAATTGGCTCCGTTTGTCATTTGAACCCTCCTACTTACTACTTCCCAAATGAACTCCTAAACTCGACAGAACTCTACTTTGTAGACCCTTTTCTCATCCTCTCAGTGTGTGTATAATACAATTGCTTGCATGTCGAATTCCAAGTCATTTTATAATGAGACAGAAAAAGTTACATATTAAAAATTAAATAATATACAACAAAGTAATAATATTTTTTCTGATTGTACCTCCTTTTCCCATCCCCCCCAAAAAAAAAAATAAAATATCCAAACCACCTCCCACTCCTATCCATTTTTTTTTTGATGACAAGGAAAACCCGCAGCCGCTACCCTTTGGGTGCGCACAGGTAAAACCCCTGCTTCTATGCAATAGTTTGCAAACCACATTGGAGAGGATTCCTACTCCTACTCTTTCTCCAATCATTTTTACCCCCAAAAACTTACTCAAAATTCACCAGCCACTATCTTTATCGCAAGATGAACAATGATTAGATTTTTAGGTACGTGTGTTCTTATTTATAGAGCTAATGCAATTTATAGGAAAAACAATGGGTGTTGGAAAGAGATTTTGGGTGTTTTATGTTTGATATGAGTGTTTAGTAGTTGTTGAATGGTAGTTTTTCCTTTTTGTTGGAAATTTAAGTACATAGAAATGGTAAATGGGTCAGCCGGCAAAGATTGATTCTTAGTGTGATACCAATGGTTGCAAATTACACTCGAGGTTTTTAAGAAGAAGAAGAGTAGAAAATTTGGAAATTTCATAGTTTGAAAATGAGAGGAAACCCCTCTATTTAGAGACAACAAATAGTAGTATGAATAGTTGTTAATTGTGCTTTATTAGAAAAGTCAGAATCTTCAGTAACGTCACAATTCTTCAATATGAAAACGTGTCTATTTATAATATAATATAGATAAATATAAATTATAAAATATAGAGAATGCTTTTAAGGTAGTATAGATAGATTAATTTGACCATGTGATTTGCAGGTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGGGTGAGTTGTGTAATTAAAATACGCCAAATATGTGTTTAATGTCTGTTTGGGGCAGTTGTTATCATATGGTTTGAATAATCTACTTTCTCCTTTCTCTTCGTTTTGGTGTAACCTGCAGTCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTTCCAGTCCTGGCTTTCCAAGTCACTTTTGTATTATCATCTCTTGTCAGTTTATTACTCTCTGCCAAAAGTTAAGGTTGTTGGTGTTAGCAAGTGCGTCCTGTGGCTTTTGTTACCTTCGCCATCCTTTTCTTTTGACATAATATGATTTCTTTTTCATATCGCCTTAGTTTTGATATGAATTAATTAGTTCGGTTGTAACTATACTATTTGAGAACATCAGGTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATAGTAAGTTGGAGTTCAAGATTTGATTTTTATTTGTCAACAGTGGATAGGAATAGTAAATTTTATGTCTGGAATTGTTCTTCGTTTTTTTCCAGTTTATGCAGATGGAAGTATATGTTTGGATATTCT</genome_strand>
        <mrna_strand>TGCGAACTCCAGGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGG......................................................................................................................TCCTGATGACACTCCTTGGGATGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGGTTGTTTCTCGCATGTTTCATCCTAATA............................................................................................TTTATGCAGATGGAAGTATATGTTTGGATATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273838" ref_strand="+" ref_description="SGN-E273838 [cLEN-7-E19]">
      <seq>gaactccaggggcagctacgagagaacacaaagcacaggaccttagctcggaaccctacctcaccgccttgttaccgccgtattggtggttacaatgtcgactccagctagaaagaggctgatgagggatttcaagaggttgcagcaggaccctcctgctggtattagtggtgcacctcaagacaacaacattatgctttggaatgccgtgatatttggtcctgatgacactccttgggatggtggtacgttcaagttgactcttcaattctctgaggattaccccaacaagccaccaacagtgcggtttgtttctcgcatgtttcatcctaatatttatgcagatggaagtatatgtttggatattcttcagaatcaatggagtccaatttatgatgttgcggcaatacttacatccattcagtcattgctgtgtgatccaaaccccaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10588" stop="14375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10888" g_stop="10972" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10973" i_stop="12977" i_length="2005">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12978" g_stop="13111" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="219" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13112" i_stop="13229" i_length="118">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13230" g_stop="13255" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="245" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13256" i_stop="13798" i_length="543">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13799" g_stop="13888" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="335" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13889" i_stop="13980" i_length="92">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="0.624" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13981" g_stop="14069" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="424" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E273838" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10888" e_stop="10972"/>
          <exon e_start="12978" e_stop="13111"/>
          <exon e_start="13230" e_stop="13255"/>
          <exon e_start="13799" e_stop="13888"/>
          <exon e_start="13981" e_stop="14069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTCCAGGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTGGTAAGTCCTTTGATTTTATATCTTCAATTTCCGATGGATCTTTGGAGTTCAAGGAAACTGGACAGGAAACTGATCTTTTGTTAAAAGCGAAAGCGGTTAAATTGGATAATTCTAATTTAGTTTGGAGAGTGTTTAAGAATTTTATGTGATTGTGCTTTTGCGACAATTAGCGAGAAGTTTTTGATCTTCAGTAAATAGTGTTATATTAGGGGAATTGTATGTGCGAGCCCTAATTCATGTGTGCTACAGTTGATTATTGTTATTTATTGTTCTGGAATTTGAGCTTTGTTACTTGATTGAGATGATCATAATTAGATCATGAGTTAAGCCAAATGAGAACTTGATTTATACCTGGATGACTGTGTTAAAGTGATATAAACAACTTTTACATACTTTTAATCCTGAAGTGGTGTTTAGAACTAAAATTTTTGACTTAGGTCATAAGTTTGAACCATGCACCAAGCGAATTAAAGTGCAGTATTTAAGTGGAGGAGGGTAGAGGGCTGGGCTCATCATCCCCAAGTTTCAAAGTGCGTAAGGGTTGGCTCTAGACAGATTTTATGGGTCATTAAATATAATAAAGGGCAAACAGAAAAAGCTCAATAGTAGTTCTCTTTTGTTGGGTTTGTTAACTAGTACTCGAGCATGTATTGTAGCATGTGTATCTCTTGCAAATTAGTATTAATGTTTTAAAATGATATAAAATATTAAAGTATGTATGTGATGGAAATCATAGGAGAAAAATACAAGTGCGGATTGATGAATGATTAGCCTATTGGACTGATATTTATTGTCATCGCAAAGCGCTAACGCCATCGCCGAAATGGTTTCTTTGGGGAGAAAAAGGTTTCCTTTTGTACCTTCTTCTAATATCGTTGGACCATGATAGTGAGTGGATGAAGCAGAAATTACCATTTGCGTTGAATCCATGAATAAAAAAAAGTAAAATTACAAGGATAGCAAGTTAATAAGGAAGAGAAACAAATAAAATTAAGGCGGACTGGCTTGGGAGTCTCTTGTAATTGGCTCCGTTTGTCATTTGAACCCTCCTACTTACTACTTCCCAAATGAACTCCTAAACTCGACAGAACTCTACTTTGTAGACCCTTTTCTCATCCTCTCAGTGTGTGTATAATACAATTGCTTGCATGTCGAATTCCAAGTCATTTTATAATGAGACAGAAAAAGTTACATATTAAAAATTAAATAATATACAACAAAGTAATAATATTTTTTCTGATTGTACCTCCTTTTCCCATCCCCCCCAAAAAAAAAAATAAAATATCCAAACCACCTCCCACTCCTATCCATTTTTTTTTTGATGACAAGGAAAACCCGCAGCCGCTACCCTTTGGGTGCGCACAGGTAAAACCCCTGCTTCTATGCAATAGTTTGCAAACCACATTGGAGAGGATTCCTACTCCTACTCTTTCTCCAATCATTTTTACCCCCAAAAACTTACTCAAAATTCACCAGCCACTATCTTTATCGCAAGATGAACAATGATTAGATTTTTAGGTACGTGTGTTCTTATTTATAGAGCTAATGCAATTTATAGGAAAAACAATGGGTGTTGGAAAGAGATTTTGGGTGTTTTATGTTTGATATGAGTGTTTAGTAGTTGTTGAATGGTAGTTTTTCCTTTTTGTTGGAAATTTAAGTACATAGAAATGGTAAATGGGTCAGCCGGCAAAGATTGATTCTTAGTGTGATACCAATGGTTGCAAATTACACTCGAGGTTTTTAAGAAGAAGAAGAGTAGAAAATTTGGAAATTTCATAGTTTGAAAATGAGAGGAAACCCCTCTATTTAGAGACAACAAATAGTAGTATGAATAGTTGTTAATTGTGCTTTATTAGAAAAGTCAGAATCTTCAGTAACGTCACAATTCTTCAATATGAAAACGTGTCTATTTATAATATAATATAGATAAATATAAATTATAAAATATAGAGAATGCTTTTAAGGTAGTATAGATAGATTAATTTGACCATGTGATTTGCAGGTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGGGTGAGTTGTGTAATTAAAATACGCCAAATATGTGTTTAATGTCTGTTTGGGGCAGTTGTTATCATATGGTTTGAATAATCTACTTTCTCCTTTCTCTTCGTTTTGGTGTAACCTGCAGTCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTTCCAGTCCTGGCTTTCCAAGTCACTTTTGTATTATCATCTCTTGTCAGTTTATTACTCTCTGCCAAAAGTTAAGGTTGTTGGTGTTAGCAAGTGCGTCCTGTGGCTTTTGTTACCTTCGCCATCCTTTTCTTTTGACATAATATGATTTCTTTTTCATATCGCCTTAGTTTTGATATGAATTAATTAGTTCGGTTGTAACTATACTATTTGAGAACATCAGGTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATAGTAAGTTGGAGTTCAAGATTTGATTTTTATTTGTCAACAGTGGATAGGAATAGTAAATTTTATGTCTGGAATTGTTCTTCGTTTTTTTCCAGTTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTACATCCATTCAG</genome_strand>
        <mrna_strand>GAACTCCAGGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGG......................................................................................................................TCCTGATGACACTCCTTGGGATGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATA............................................................................................TTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTACATCCATTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369570" ref_strand="+" ref_description="SGN-E369570 [TUS-25-J4]">
      <seq>gaactccaggggcagctacgagagaacacaaagcacaggaccttagctcggaaccctacctcaccgccttgttaccgccgtattggtggttacaatgtcgactccagctagaaagaggctgatgagggatttcaagaggttgcagcaggaccctcctgctggtattagtggtgcacctcaagacaacaacattatgctttggaatgccgtgatatttggtcctgatgacactccttgggatggtggtgagttatccttgcatttggtcgttagtgcagtgtggcagaagaatgttaaaggcttaaagcgttgtagttggtgcacatctactgtttatgcattgttgtctgtacaattcaattatgttttaatcatctcagtctctcttttctgtgatttgaaattctgaataatcagtttggagagtcgcacccctcgtcccctcccaggacattccttgcctacgaataagtagtgatgaatgttatgaatcatctcatagaggtgatgcatattctagttttggaaatgcttgaatcctttctttgatctcccagtccaagcatttccagtcctggctttccaagtcacttttgtattatcatctcttgtcagtttattactctctgccaaaagttaaggttgttggtgttagcaagtgcgtcctgtggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10588" stop="13984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10888" g_stop="10972" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10973" i_stop="12977" i_length="2005">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12978" g_stop="13111" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="219" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13112" i_stop="13229" i_length="118">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13230" g_stop="13684" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="674" r_length="455" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E369570" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10888" e_stop="10972"/>
          <exon e_start="12978" e_stop="13111"/>
          <exon e_start="13230" e_stop="13684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTCCAGGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTGGTAAGTCCTTTGATTTTATATCTTCAATTTCCGATGGATCTTTGGAGTTCAAGGAAACTGGACAGGAAACTGATCTTTTGTTAAAAGCGAAAGCGGTTAAATTGGATAATTCTAATTTAGTTTGGAGAGTGTTTAAGAATTTTATGTGATTGTGCTTTTGCGACAATTAGCGAGAAGTTTTTGATCTTCAGTAAATAGTGTTATATTAGGGGAATTGTATGTGCGAGCCCTAATTCATGTGTGCTACAGTTGATTATTGTTATTTATTGTTCTGGAATTTGAGCTTTGTTACTTGATTGAGATGATCATAATTAGATCATGAGTTAAGCCAAATGAGAACTTGATTTATACCTGGATGACTGTGTTAAAGTGATATAAACAACTTTTACATACTTTTAATCCTGAAGTGGTGTTTAGAACTAAAATTTTTGACTTAGGTCATAAGTTTGAACCATGCACCAAGCGAATTAAAGTGCAGTATTTAAGTGGAGGAGGGTAGAGGGCTGGGCTCATCATCCCCAAGTTTCAAAGTGCGTAAGGGTTGGCTCTAGACAGATTTTATGGGTCATTAAATATAATAAAGGGCAAACAGAAAAAGCTCAATAGTAGTTCTCTTTTGTTGGGTTTGTTAACTAGTACTCGAGCATGTATTGTAGCATGTGTATCTCTTGCAAATTAGTATTAATGTTTTAAAATGATATAAAATATTAAAGTATGTATGTGATGGAAATCATAGGAGAAAAATACAAGTGCGGATTGATGAATGATTAGCCTATTGGACTGATATTTATTGTCATCGCAAAGCGCTAACGCCATCGCCGAAATGGTTTCTTTGGGGAGAAAAAGGTTTCCTTTTGTACCTTCTTCTAATATCGTTGGACCATGATAGTGAGTGGATGAAGCAGAAATTACCATTTGCGTTGAATCCATGAATAAAAAAAAGTAAAATTACAAGGATAGCAAGTTAATAAGGAAGAGAAACAAATAAAATTAAGGCGGACTGGCTTGGGAGTCTCTTGTAATTGGCTCCGTTTGTCATTTGAACCCTCCTACTTACTACTTCCCAAATGAACTCCTAAACTCGACAGAACTCTACTTTGTAGACCCTTTTCTCATCCTCTCAGTGTGTGTATAATACAATTGCTTGCATGTCGAATTCCAAGTCATTTTATAATGAGACAGAAAAAGTTACATATTAAAAATTAAATAATATACAACAAAGTAATAATATTTTTTCTGATTGTACCTCCTTTTCCCATCCCCCCCAAAAAAAAAAATAAAATATCCAAACCACCTCCCACTCCTATCCATTTTTTTTTTGATGACAAGGAAAACCCGCAGCCGCTACCCTTTGGGTGCGCACAGGTAAAACCCCTGCTTCTATGCAATAGTTTGCAAACCACATTGGAGAGGATTCCTACTCCTACTCTTTCTCCAATCATTTTTACCCCCAAAAACTTACTCAAAATTCACCAGCCACTATCTTTATCGCAAGATGAACAATGATTAGATTTTTAGGTACGTGTGTTCTTATTTATAGAGCTAATGCAATTTATAGGAAAAACAATGGGTGTTGGAAAGAGATTTTGGGTGTTTTATGTTTGATATGAGTGTTTAGTAGTTGTTGAATGGTAGTTTTTCCTTTTTGTTGGAAATTTAAGTACATAGAAATGGTAAATGGGTCAGCCGGCAAAGATTGATTCTTAGTGTGATACCAATGGTTGCAAATTACACTCGAGGTTTTTAAGAAGAAGAAGAGTAGAAAATTTGGAAATTTCATAGTTTGAAAATGAGAGGAAACCCCTCTATTTAGAGACAACAAATAGTAGTATGAATAGTTGTTAATTGTGCTTTATTAGAAAAGTCAGAATCTTCAGTAACGTCACAATTCTTCAATATGAAAACGTGTCTATTTATAATATAATATAGATAAATATAAATTATAAAATATAGAGAATGCTTTTAAGGTAGTATAGATAGATTAATTTGACCATGTGATTTGCAGGTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGGGTGAGTTGTGTAATTAAAATACGCCAAATATGTGTTTAATGTCTGTTTGGGGCAGTTGTTATCATATGGTTTGAATAATCTACTTTCTCCTTTCTCTTCGTTTTGGTGTAACCTGCAGTCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTTCCAGTCCTGGCTTTCCAAGTCACTTTTGTATTATCATCTCTTGTCAGTTTATTACTCTCTGCCAAAAGTTAAGGTTGTTGGTGTTAGCAAGTGCGTCCTGTGGCTT</genome_strand>
        <mrna_strand>GAACTCCAGGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGG......................................................................................................................TCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTTCCAGTCCTGGCTTTCCAAGTCACTTTTGTATTATCATCTCTTGTCAGTTTATTACTCTCTGCCAAAAGTTAAGGTTGTTGGTGTTAGCAAGTGCGTCCTGTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248960" ref_strand="+" ref_description="SGN-E248960 [cLEF-49-J8]">
      <seq>gaactccaggggcagctacgagagaacacaaagcacaggaccttagctcggaaccctacctcaccgccttgttaccgccgtattggtggttacaatgtcgactccagctagaaagaggctgatgagggatttcaagaggttgcagcaggaccctcctgctggtattagtggtgcacctcaagacaacaacattatgctttggaatgccgtgatatttggtcctgatgacactccttgggatggtggtgagttatccttgcatttggtcgttagtgcagtgtggcagaagaatgttaaaggcttaaagcgttgtagttggtgcacatctactgtttatgcattgttgtctgtacaattcaattatgttttaatcatctcagtctctcttttctgtgatttgaaattctgaataatcagtttggagagtcgcacccctcgtcccctcccaggacattccttgcctacgaataagtagtgatgaatgttatgaatcatctcatagaggtgatgcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10588" stop="13824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10888" g_stop="10972" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10973" i_stop="12977" i_length="2005">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12978" g_stop="13111" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="219" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13112" i_stop="13229" i_length="118">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13230" g_stop="13524" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="514" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E248960" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10888" e_stop="10972"/>
          <exon e_start="12978" e_stop="13111"/>
          <exon e_start="13230" e_stop="13524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTCCAGGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTGGTAAGTCCTTTGATTTTATATCTTCAATTTCCGATGGATCTTTGGAGTTCAAGGAAACTGGACAGGAAACTGATCTTTTGTTAAAAGCGAAAGCGGTTAAATTGGATAATTCTAATTTAGTTTGGAGAGTGTTTAAGAATTTTATGTGATTGTGCTTTTGCGACAATTAGCGAGAAGTTTTTGATCTTCAGTAAATAGTGTTATATTAGGGGAATTGTATGTGCGAGCCCTAATTCATGTGTGCTACAGTTGATTATTGTTATTTATTGTTCTGGAATTTGAGCTTTGTTACTTGATTGAGATGATCATAATTAGATCATGAGTTAAGCCAAATGAGAACTTGATTTATACCTGGATGACTGTGTTAAAGTGATATAAACAACTTTTACATACTTTTAATCCTGAAGTGGTGTTTAGAACTAAAATTTTTGACTTAGGTCATAAGTTTGAACCATGCACCAAGCGAATTAAAGTGCAGTATTTAAGTGGAGGAGGGTAGAGGGCTGGGCTCATCATCCCCAAGTTTCAAAGTGCGTAAGGGTTGGCTCTAGACAGATTTTATGGGTCATTAAATATAATAAAGGGCAAACAGAAAAAGCTCAATAGTAGTTCTCTTTTGTTGGGTTTGTTAACTAGTACTCGAGCATGTATTGTAGCATGTGTATCTCTTGCAAATTAGTATTAATGTTTTAAAATGATATAAAATATTAAAGTATGTATGTGATGGAAATCATAGGAGAAAAATACAAGTGCGGATTGATGAATGATTAGCCTATTGGACTGATATTTATTGTCATCGCAAAGCGCTAACGCCATCGCCGAAATGGTTTCTTTGGGGAGAAAAAGGTTTCCTTTTGTACCTTCTTCTAATATCGTTGGACCATGATAGTGAGTGGATGAAGCAGAAATTACCATTTGCGTTGAATCCATGAATAAAAAAAAGTAAAATTACAAGGATAGCAAGTTAATAAGGAAGAGAAACAAATAAAATTAAGGCGGACTGGCTTGGGAGTCTCTTGTAATTGGCTCCGTTTGTCATTTGAACCCTCCTACTTACTACTTCCCAAATGAACTCCTAAACTCGACAGAACTCTACTTTGTAGACCCTTTTCTCATCCTCTCAGTGTGTGTATAATACAATTGCTTGCATGTCGAATTCCAAGTCATTTTATAATGAGACAGAAAAAGTTACATATTAAAAATTAAATAATATACAACAAAGTAATAATATTTTTTCTGATTGTACCTCCTTTTCCCATCCCCCCCAAAAAAAAAAATAAAATATCCAAACCACCTCCCACTCCTATCCATTTTTTTTTTGATGACAAGGAAAACCCGCAGCCGCTACCCTTTGGGTGCGCACAGGTAAAACCCCTGCTTCTATGCAATAGTTTGCAAACCACATTGGAGAGGATTCCTACTCCTACTCTTTCTCCAATCATTTTTACCCCCAAAAACTTACTCAAAATTCACCAGCCACTATCTTTATCGCAAGATGAACAATGATTAGATTTTTAGGTACGTGTGTTCTTATTTATAGAGCTAATGCAATTTATAGGAAAAACAATGGGTGTTGGAAAGAGATTTTGGGTGTTTTATGTTTGATATGAGTGTTTAGTAGTTGTTGAATGGTAGTTTTTCCTTTTTGTTGGAAATTTAAGTACATAGAAATGGTAAATGGGTCAGCCGGCAAAGATTGATTCTTAGTGTGATACCAATGGTTGCAAATTACACTCGAGGTTTTTAAGAAGAAGAAGAGTAGAAAATTTGGAAATTTCATAGTTTGAAAATGAGAGGAAACCCCTCTATTTAGAGACAACAAATAGTAGTATGAATAGTTGTTAATTGTGCTTTATTAGAAAAGTCAGAATCTTCAGTAACGTCACAATTCTTCAATATGAAAACGTGTCTATTTATAATATAATATAGATAAATATAAATTATAAAATATAGAGAATGCTTTTAAGGTAGTATAGATAGATTAATTTGACCATGTGATTTGCAGGTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGGGTGAGTTGTGTAATTAAAATACGCCAAATATGTGTTTAATGTCTGTTTGGGGCAGTTGTTATCATATGGTTTGAATAATCTACTTTCTCCTTTCTCTTCGTTTTGGTGTAACCTGCAGTCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATA</genome_strand>
        <mrna_strand>GAACTCCAGGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGG......................................................................................................................TCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275975" ref_strand="+" ref_description="SGN-E275975 [cLEN-12-B24]">
      <seq>aactccacgggcagctacgagagaacacaggggacaggaccttagctcggaaccctacctcaccgccttgttaccgccgtattggtggttacaatgtcgactccagctagaaagaggctgatgagggatttcaagaggttgcagcaggaccctcctgctggtattagtggtgcacctcaagacaacaacattatgctttggaatgccgtgatatttggtcctgatgacactccttgggatggtggtacgttcaagatgactcttcaattgtctgaggattaccccaacaagccaccaacagggcggttggtttctcgcatgttgcatcctaatatttatgcagatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10589" stop="14201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10889" g_stop="10972" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10973" i_stop="12977" i_length="2005">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12978" g_stop="13111" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="218" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13112" i_stop="13229" i_length="118">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13230" g_stop="13255" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="244" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13256" i_stop="13798" i_length="543">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.872" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13799" g_stop="13888" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="334" r_length="90" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13889" i_stop="13980" i_length="92">
            <donor d_prob="0.829" d_score="0.94"/>
            <acceptor a_prob="0.624" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13981" g_stop="13994" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="348" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E275975" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10889" e_stop="10972"/>
          <exon e_start="12978" e_stop="13111"/>
          <exon e_start="13230" e_stop="13255"/>
          <exon e_start="13799" e_stop="13888"/>
          <exon e_start="13981" e_stop="13994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCCAGGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTGGTAAGTCCTTTGATTTTATATCTTCAATTTCCGATGGATCTTTGGAGTTCAAGGAAACTGGACAGGAAACTGATCTTTTGTTAAAAGCGAAAGCGGTTAAATTGGATAATTCTAATTTAGTTTGGAGAGTGTTTAAGAATTTTATGTGATTGTGCTTTTGCGACAATTAGCGAGAAGTTTTTGATCTTCAGTAAATAGTGTTATATTAGGGGAATTGTATGTGCGAGCCCTAATTCATGTGTGCTACAGTTGATTATTGTTATTTATTGTTCTGGAATTTGAGCTTTGTTACTTGATTGAGATGATCATAATTAGATCATGAGTTAAGCCAAATGAGAACTTGATTTATACCTGGATGACTGTGTTAAAGTGATATAAACAACTTTTACATACTTTTAATCCTGAAGTGGTGTTTAGAACTAAAATTTTTGACTTAGGTCATAAGTTTGAACCATGCACCAAGCGAATTAAAGTGCAGTATTTAAGTGGAGGAGGGTAGAGGGCTGGGCTCATCATCCCCAAGTTTCAAAGTGCGTAAGGGTTGGCTCTAGACAGATTTTATGGGTCATTAAATATAATAAAGGGCAAACAGAAAAAGCTCAATAGTAGTTCTCTTTTGTTGGGTTTGTTAACTAGTACTCGAGCATGTATTGTAGCATGTGTATCTCTTGCAAATTAGTATTAATGTTTTAAAATGATATAAAATATTAAAGTATGTATGTGATGGAAATCATAGGAGAAAAATACAAGTGCGGATTGATGAATGATTAGCCTATTGGACTGATATTTATTGTCATCGCAAAGCGCTAACGCCATCGCCGAAATGGTTTCTTTGGGGAGAAAAAGGTTTCCTTTTGTACCTTCTTCTAATATCGTTGGACCATGATAGTGAGTGGATGAAGCAGAAATTACCATTTGCGTTGAATCCATGAATAAAAAAAAGTAAAATTACAAGGATAGCAAGTTAATAAGGAAGAGAAACAAATAAAATTAAGGCGGACTGGCTTGGGAGTCTCTTGTAATTGGCTCCGTTTGTCATTTGAACCCTCCTACTTACTACTTCCCAAATGAACTCCTAAACTCGACAGAACTCTACTTTGTAGACCCTTTTCTCATCCTCTCAGTGTGTGTATAATACAATTGCTTGCATGTCGAATTCCAAGTCATTTTATAATGAGACAGAAAAAGTTACATATTAAAAATTAAATAATATACAACAAAGTAATAATATTTTTTCTGATTGTACCTCCTTTTCCCATCCCCCCCAAAAAAAAAAATAAAATATCCAAACCACCTCCCACTCCTATCCATTTTTTTTTTGATGACAAGGAAAACCCGCAGCCGCTACCCTTTGGGTGCGCACAGGTAAAACCCCTGCTTCTATGCAATAGTTTGCAAACCACATTGGAGAGGATTCCTACTCCTACTCTTTCTCCAATCATTTTTACCCCCAAAAACTTACTCAAAATTCACCAGCCACTATCTTTATCGCAAGATGAACAATGATTAGATTTTTAGGTACGTGTGTTCTTATTTATAGAGCTAATGCAATTTATAGGAAAAACAATGGGTGTTGGAAAGAGATTTTGGGTGTTTTATGTTTGATATGAGTGTTTAGTAGTTGTTGAATGGTAGTTTTTCCTTTTTGTTGGAAATTTAAGTACATAGAAATGGTAAATGGGTCAGCCGGCAAAGATTGATTCTTAGTGTGATACCAATGGTTGCAAATTACACTCGAGGTTTTTAAGAAGAAGAAGAGTAGAAAATTTGGAAATTTCATAGTTTGAAAATGAGAGGAAACCCCTCTATTTAGAGACAACAAATAGTAGTATGAATAGTTGTTAATTGTGCTTTATTAGAAAAGTCAGAATCTTCAGTAACGTCACAATTCTTCAATATGAAAACGTGTCTATTTATAATATAATATAGATAAATATAAATTATAAAATATAGAGAATGCTTTTAAGGTAGTATAGATAGATTAATTTGACCATGTGATTTGCAGGTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGGGTGAGTTGTGTAATTAAAATACGCCAAATATGTGTTTAATGTCTGTTTGGGGCAGTTGTTATCATATGGTTTGAATAATCTACTTTCTCCTTTCTCTTCGTTTTGGTGTAACCTGCAGTCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTTCCAGTCCTGGCTTTCCAAGTCACTTTTGTATTATCATCTCTTGTCAGTTTATTACTCTCTGCCAAAAGTTAAGGTTGTTGGTGTTAGCAAGTGCGTCCTGTGGCTTTTGTTACCTTCGCCATCCTTTTCTTTTGACATAATATGATTTCTTTTTCATATCGCCTTAGTTTTGATATGAATTAATTAGTTCGGTTGTAACTATACTATTTGAGAACATCAGGTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATAGTAAGTTGGAGTTCAAGATTTGATTTTTATTTGTCAACAGTGGATAGGAATAGTAAATTTTATGTCTGGAATTGTTCTTCGTTTTTTTCCAGTTTATGCAGATGGA</genome_strand>
        <mrna_strand>AACTCCACGGGCAGCTACGAGAGAACACAGGGGACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGG......................................................................................................................TCCTGATGACACTCCTTGGGATGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTTCAAGATGACTCTTCAATTGTCTGAGGATTACCCCAACAAGCCACCAACAGGGCGGTTGGTTTCTCGCATGTTGCATCCTAATA............................................................................................TTTATGCAGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250307" ref_strand="+" ref_description="SGN-E250307 [cLEG-6-D19]">
      <seq>aactccaggggcagctacgagagaacacaaagcacaggaccttagctcggaaccctacctcaccgccttgttaccgccgtattggtggttacaatgtcgactccagctagaaagaggctgatgagggatttcaagaggttgcagcaggaccctcctgctggtattagtggtgcacctcaagacaacaacattatgctttggaatgccgcgatatttggtcctgatgacactccttggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10589" stop="13550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10889" g_stop="10972" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10973" i_stop="12977" i_length="2005">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12978" g_stop="13111" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="218" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13112" i_stop="13229" i_length="118">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13230" g_stop="13250" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="239" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E250307" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10889" e_stop="10972"/>
          <exon e_start="12978" e_stop="13111"/>
          <exon e_start="13230" e_stop="13250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCCAGGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTGGTAAGTCCTTTGATTTTATATCTTCAATTTCCGATGGATCTTTGGAGTTCAAGGAAACTGGACAGGAAACTGATCTTTTGTTAAAAGCGAAAGCGGTTAAATTGGATAATTCTAATTTAGTTTGGAGAGTGTTTAAGAATTTTATGTGATTGTGCTTTTGCGACAATTAGCGAGAAGTTTTTGATCTTCAGTAAATAGTGTTATATTAGGGGAATTGTATGTGCGAGCCCTAATTCATGTGTGCTACAGTTGATTATTGTTATTTATTGTTCTGGAATTTGAGCTTTGTTACTTGATTGAGATGATCATAATTAGATCATGAGTTAAGCCAAATGAGAACTTGATTTATACCTGGATGACTGTGTTAAAGTGATATAAACAACTTTTACATACTTTTAATCCTGAAGTGGTGTTTAGAACTAAAATTTTTGACTTAGGTCATAAGTTTGAACCATGCACCAAGCGAATTAAAGTGCAGTATTTAAGTGGAGGAGGGTAGAGGGCTGGGCTCATCATCCCCAAGTTTCAAAGTGCGTAAGGGTTGGCTCTAGACAGATTTTATGGGTCATTAAATATAATAAAGGGCAAACAGAAAAAGCTCAATAGTAGTTCTCTTTTGTTGGGTTTGTTAACTAGTACTCGAGCATGTATTGTAGCATGTGTATCTCTTGCAAATTAGTATTAATGTTTTAAAATGATATAAAATATTAAAGTATGTATGTGATGGAAATCATAGGAGAAAAATACAAGTGCGGATTGATGAATGATTAGCCTATTGGACTGATATTTATTGTCATCGCAAAGCGCTAACGCCATCGCCGAAATGGTTTCTTTGGGGAGAAAAAGGTTTCCTTTTGTACCTTCTTCTAATATCGTTGGACCATGATAGTGAGTGGATGAAGCAGAAATTACCATTTGCGTTGAATCCATGAATAAAAAAAAGTAAAATTACAAGGATAGCAAGTTAATAAGGAAGAGAAACAAATAAAATTAAGGCGGACTGGCTTGGGAGTCTCTTGTAATTGGCTCCGTTTGTCATTTGAACCCTCCTACTTACTACTTCCCAAATGAACTCCTAAACTCGACAGAACTCTACTTTGTAGACCCTTTTCTCATCCTCTCAGTGTGTGTATAATACAATTGCTTGCATGTCGAATTCCAAGTCATTTTATAATGAGACAGAAAAAGTTACATATTAAAAATTAAATAATATACAACAAAGTAATAATATTTTTTCTGATTGTACCTCCTTTTCCCATCCCCCCCAAAAAAAAAAATAAAATATCCAAACCACCTCCCACTCCTATCCATTTTTTTTTTGATGACAAGGAAAACCCGCAGCCGCTACCCTTTGGGTGCGCACAGGTAAAACCCCTGCTTCTATGCAATAGTTTGCAAACCACATTGGAGAGGATTCCTACTCCTACTCTTTCTCCAATCATTTTTACCCCCAAAAACTTACTCAAAATTCACCAGCCACTATCTTTATCGCAAGATGAACAATGATTAGATTTTTAGGTACGTGTGTTCTTATTTATAGAGCTAATGCAATTTATAGGAAAAACAATGGGTGTTGGAAAGAGATTTTGGGTGTTTTATGTTTGATATGAGTGTTTAGTAGTTGTTGAATGGTAGTTTTTCCTTTTTGTTGGAAATTTAAGTACATAGAAATGGTAAATGGGTCAGCCGGCAAAGATTGATTCTTAGTGTGATACCAATGGTTGCAAATTACACTCGAGGTTTTTAAGAAGAAGAAGAGTAGAAAATTTGGAAATTTCATAGTTTGAAAATGAGAGGAAACCCCTCTATTTAGAGACAACAAATAGTAGTATGAATAGTTGTTAATTGTGCTTTATTAGAAAAGTCAGAATCTTCAGTAACGTCACAATTCTTCAATATGAAAACGTGTCTATTTATAATATAATATAGATAAATATAAATTATAAAATATAGAGAATGCTTTTAAGGTAGTATAGATAGATTAATTTGACCATGTGATTTGCAGGTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGGGTGAGTTGTGTAATTAAAATACGCCAAATATGTGTTTAATGTCTGTTTGGGGCAGTTGTTATCATATGGTTTGAATAATCTACTTTCTCCTTTCTCTTCGTTTTGGTGTAACCTGCAGTCCTGATGACACTCCTTGGGA</genome_strand>
        <mrna_strand>AACTCCAGGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGCGATATTTGG......................................................................................................................TCCTGATGACACTCCTTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245148" ref_strand="+" ref_description="SGN-E245148 [cLEF-13-P12]">
      <seq>actccaggggcagctacgagagaacacaaagcacaggaccttagctcggaaccctacctcaccgccttgttaccgccgtattggtggttacaatgtcgactccagctagaaagaggctgatgagggatttcaagaggttgcagcaggaccctcctgctggtattagtggtgcacctcaagacaacaacattatgctttggaatgccgtgatatttggtcctgatgacactccttgggatggtggtacgttcaagttgactcttcaattctctgaggattaccccaacaagccaccaacagtgcggtttgtttctcgcatgtttcatcctaatatttatgcagatggaagtatatgtttggatattcttcagaatcaatggagtccaatttatgatgttgcggcaatactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10590" stop="14358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10890" g_stop="10972" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10973" i_stop="12977" i_length="2005">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12978" g_stop="13111" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="217" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13112" i_stop="13229" i_length="118">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13230" g_stop="13255" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="243" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13256" i_stop="13798" i_length="543">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13799" g_stop="13888" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="333" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13889" i_stop="13980" i_length="92">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="0.624" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13981" g_stop="14058" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="411" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E245148" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10890" e_stop="10972"/>
          <exon e_start="12978" e_stop="13111"/>
          <exon e_start="13230" e_stop="13255"/>
          <exon e_start="13799" e_stop="13888"/>
          <exon e_start="13981" e_stop="14058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCAGGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTGGTAAGTCCTTTGATTTTATATCTTCAATTTCCGATGGATCTTTGGAGTTCAAGGAAACTGGACAGGAAACTGATCTTTTGTTAAAAGCGAAAGCGGTTAAATTGGATAATTCTAATTTAGTTTGGAGAGTGTTTAAGAATTTTATGTGATTGTGCTTTTGCGACAATTAGCGAGAAGTTTTTGATCTTCAGTAAATAGTGTTATATTAGGGGAATTGTATGTGCGAGCCCTAATTCATGTGTGCTACAGTTGATTATTGTTATTTATTGTTCTGGAATTTGAGCTTTGTTACTTGATTGAGATGATCATAATTAGATCATGAGTTAAGCCAAATGAGAACTTGATTTATACCTGGATGACTGTGTTAAAGTGATATAAACAACTTTTACATACTTTTAATCCTGAAGTGGTGTTTAGAACTAAAATTTTTGACTTAGGTCATAAGTTTGAACCATGCACCAAGCGAATTAAAGTGCAGTATTTAAGTGGAGGAGGGTAGAGGGCTGGGCTCATCATCCCCAAGTTTCAAAGTGCGTAAGGGTTGGCTCTAGACAGATTTTATGGGTCATTAAATATAATAAAGGGCAAACAGAAAAAGCTCAATAGTAGTTCTCTTTTGTTGGGTTTGTTAACTAGTACTCGAGCATGTATTGTAGCATGTGTATCTCTTGCAAATTAGTATTAATGTTTTAAAATGATATAAAATATTAAAGTATGTATGTGATGGAAATCATAGGAGAAAAATACAAGTGCGGATTGATGAATGATTAGCCTATTGGACTGATATTTATTGTCATCGCAAAGCGCTAACGCCATCGCCGAAATGGTTTCTTTGGGGAGAAAAAGGTTTCCTTTTGTACCTTCTTCTAATATCGTTGGACCATGATAGTGAGTGGATGAAGCAGAAATTACCATTTGCGTTGAATCCATGAATAAAAAAAAGTAAAATTACAAGGATAGCAAGTTAATAAGGAAGAGAAACAAATAAAATTAAGGCGGACTGGCTTGGGAGTCTCTTGTAATTGGCTCCGTTTGTCATTTGAACCCTCCTACTTACTACTTCCCAAATGAACTCCTAAACTCGACAGAACTCTACTTTGTAGACCCTTTTCTCATCCTCTCAGTGTGTGTATAATACAATTGCTTGCATGTCGAATTCCAAGTCATTTTATAATGAGACAGAAAAAGTTACATATTAAAAATTAAATAATATACAACAAAGTAATAATATTTTTTCTGATTGTACCTCCTTTTCCCATCCCCCCCAAAAAAAAAAATAAAATATCCAAACCACCTCCCACTCCTATCCATTTTTTTTTTGATGACAAGGAAAACCCGCAGCCGCTACCCTTTGGGTGCGCACAGGTAAAACCCCTGCTTCTATGCAATAGTTTGCAAACCACATTGGAGAGGATTCCTACTCCTACTCTTTCTCCAATCATTTTTACCCCCAAAAACTTACTCAAAATTCACCAGCCACTATCTTTATCGCAAGATGAACAATGATTAGATTTTTAGGTACGTGTGTTCTTATTTATAGAGCTAATGCAATTTATAGGAAAAACAATGGGTGTTGGAAAGAGATTTTGGGTGTTTTATGTTTGATATGAGTGTTTAGTAGTTGTTGAATGGTAGTTTTTCCTTTTTGTTGGAAATTTAAGTACATAGAAATGGTAAATGGGTCAGCCGGCAAAGATTGATTCTTAGTGTGATACCAATGGTTGCAAATTACACTCGAGGTTTTTAAGAAGAAGAAGAGTAGAAAATTTGGAAATTTCATAGTTTGAAAATGAGAGGAAACCCCTCTATTTAGAGACAACAAATAGTAGTATGAATAGTTGTTAATTGTGCTTTATTAGAAAAGTCAGAATCTTCAGTAACGTCACAATTCTTCAATATGAAAACGTGTCTATTTATAATATAATATAGATAAATATAAATTATAAAATATAGAGAATGCTTTTAAGGTAGTATAGATAGATTAATTTGACCATGTGATTTGCAGGTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGGGTGAGTTGTGTAATTAAAATACGCCAAATATGTGTTTAATGTCTGTTTGGGGCAGTTGTTATCATATGGTTTGAATAATCTACTTTCTCCTTTCTCTTCGTTTTGGTGTAACCTGCAGTCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTTCCAGTCCTGGCTTTCCAAGTCACTTTTGTATTATCATCTCTTGTCAGTTTATTACTCTCTGCCAAAAGTTAAGGTTGTTGGTGTTAGCAAGTGCGTCCTGTGGCTTTTGTTACCTTCGCCATCCTTTTCTTTTGACATAATATGATTTCTTTTTCATATCGCCTTAGTTTTGATATGAATTAATTAGTTCGGTTGTAACTATACTATTTGAGAACATCAGGTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATAGTAAGTTGGAGTTCAAGATTTGATTTTTATTTGTCAACAGTGGATAGGAATAGTAAATTTTATGTCTGGAATTGTTCTTCGTTTTTTTCCAGTTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTA</genome_strand>
        <mrna_strand>ACTCCAGGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGG......................................................................................................................TCCTGATGACACTCCTTGGGATGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATA............................................................................................TTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244362" ref_strand="+" ref_description="SGN-E244362 [cLEF-3-O5]">
      <seq>actccatgtgtagctaccagagaacacaaagcacaggaccttagctcggaaccctacctcaccgccttgttaccgccgtattggtggttacaatgtcgactccagctagaaagaggctgatgagggatttcaagaggttgcagcaggaccctcctgctggtattagtggtgcacctcaagacaacaacattatgctttggaatgccgcgatatttggtcctgatgacactccttgggatggaggtacgtccaagttgactcttcaattctctgaggattaccccaacaagccaccaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10590" stop="14154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10890" g_stop="10972" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10973" i_stop="12977" i_length="2005">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12978" g_stop="13111" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="217" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13112" i_stop="13229" i_length="118">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13230" g_stop="13255" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="243" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13256" i_stop="13798" i_length="543">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.872" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13799" g_stop="13854" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="299" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E244362" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10890" e_stop="10972"/>
          <exon e_start="12978" e_stop="13111"/>
          <exon e_start="13230" e_stop="13255"/>
          <exon e_start="13799" e_stop="13854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCAGGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTGGTAAGTCCTTTGATTTTATATCTTCAATTTCCGATGGATCTTTGGAGTTCAAGGAAACTGGACAGGAAACTGATCTTTTGTTAAAAGCGAAAGCGGTTAAATTGGATAATTCTAATTTAGTTTGGAGAGTGTTTAAGAATTTTATGTGATTGTGCTTTTGCGACAATTAGCGAGAAGTTTTTGATCTTCAGTAAATAGTGTTATATTAGGGGAATTGTATGTGCGAGCCCTAATTCATGTGTGCTACAGTTGATTATTGTTATTTATTGTTCTGGAATTTGAGCTTTGTTACTTGATTGAGATGATCATAATTAGATCATGAGTTAAGCCAAATGAGAACTTGATTTATACCTGGATGACTGTGTTAAAGTGATATAAACAACTTTTACATACTTTTAATCCTGAAGTGGTGTTTAGAACTAAAATTTTTGACTTAGGTCATAAGTTTGAACCATGCACCAAGCGAATTAAAGTGCAGTATTTAAGTGGAGGAGGGTAGAGGGCTGGGCTCATCATCCCCAAGTTTCAAAGTGCGTAAGGGTTGGCTCTAGACAGATTTTATGGGTCATTAAATATAATAAAGGGCAAACAGAAAAAGCTCAATAGTAGTTCTCTTTTGTTGGGTTTGTTAACTAGTACTCGAGCATGTATTGTAGCATGTGTATCTCTTGCAAATTAGTATTAATGTTTTAAAATGATATAAAATATTAAAGTATGTATGTGATGGAAATCATAGGAGAAAAATACAAGTGCGGATTGATGAATGATTAGCCTATTGGACTGATATTTATTGTCATCGCAAAGCGCTAACGCCATCGCCGAAATGGTTTCTTTGGGGAGAAAAAGGTTTCCTTTTGTACCTTCTTCTAATATCGTTGGACCATGATAGTGAGTGGATGAAGCAGAAATTACCATTTGCGTTGAATCCATGAATAAAAAAAAGTAAAATTACAAGGATAGCAAGTTAATAAGGAAGAGAAACAAATAAAATTAAGGCGGACTGGCTTGGGAGTCTCTTGTAATTGGCTCCGTTTGTCATTTGAACCCTCCTACTTACTACTTCCCAAATGAACTCCTAAACTCGACAGAACTCTACTTTGTAGACCCTTTTCTCATCCTCTCAGTGTGTGTATAATACAATTGCTTGCATGTCGAATTCCAAGTCATTTTATAATGAGACAGAAAAAGTTACATATTAAAAATTAAATAATATACAACAAAGTAATAATATTTTTTCTGATTGTACCTCCTTTTCCCATCCCCCCCAAAAAAAAAAATAAAATATCCAAACCACCTCCCACTCCTATCCATTTTTTTTTTGATGACAAGGAAAACCCGCAGCCGCTACCCTTTGGGTGCGCACAGGTAAAACCCCTGCTTCTATGCAATAGTTTGCAAACCACATTGGAGAGGATTCCTACTCCTACTCTTTCTCCAATCATTTTTACCCCCAAAAACTTACTCAAAATTCACCAGCCACTATCTTTATCGCAAGATGAACAATGATTAGATTTTTAGGTACGTGTGTTCTTATTTATAGAGCTAATGCAATTTATAGGAAAAACAATGGGTGTTGGAAAGAGATTTTGGGTGTTTTATGTTTGATATGAGTGTTTAGTAGTTGTTGAATGGTAGTTTTTCCTTTTTGTTGGAAATTTAAGTACATAGAAATGGTAAATGGGTCAGCCGGCAAAGATTGATTCTTAGTGTGATACCAATGGTTGCAAATTACACTCGAGGTTTTTAAGAAGAAGAAGAGTAGAAAATTTGGAAATTTCATAGTTTGAAAATGAGAGGAAACCCCTCTATTTAGAGACAACAAATAGTAGTATGAATAGTTGTTAATTGTGCTTTATTAGAAAAGTCAGAATCTTCAGTAACGTCACAATTCTTCAATATGAAAACGTGTCTATTTATAATATAATATAGATAAATATAAATTATAAAATATAGAGAATGCTTTTAAGGTAGTATAGATAGATTAATTTGACCATGTGATTTGCAGGTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGGGTGAGTTGTGTAATTAAAATACGCCAAATATGTGTTTAATGTCTGTTTGGGGCAGTTGTTATCATATGGTTTGAATAATCTACTTTCTCCTTTCTCTTCGTTTTGGTGTAACCTGCAGTCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTTCCAGTCCTGGCTTTCCAAGTCACTTTTGTATTATCATCTCTTGTCAGTTTATTACTCTCTGCCAAAAGTTAAGGTTGTTGGTGTTAGCAAGTGCGTCCTGTGGCTTTTGTTACCTTCGCCATCCTTTTCTTTTGACATAATATGATTTCTTTTTCATATCGCCTTAGTTTTGATATGAATTAATTAGTTCGGTTGTAACTATACTATTTGAGAACATCAGGTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACA</genome_strand>
        <mrna_strand>ACTCCATGTGTAGCTACCAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGCGATATTTGG......................................................................................................................TCCTGATGACACTCCTTGGGATGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTCCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297446" ref_strand="+" ref_description="SGN-E297446 [cLEW-13-H5]">
      <seq>ctccaggggcagctacgagagaaccacaaagcacaggaccgtagctcggaaccctacctcaccgccttgttaccgccgtattggtggttaccaatgtcgactccagctagaaagaggctgatgagggatttcaagaggttgcagcaggaccctcctgctggtattagtggtgcacctcaagacaacaacattatgctttggaatgccgtgatatttggtcctgatgacactccttgggatggtggtacgttcaagttgactcttcaattctctgaggattaccccaacaagccaccaacagtgcggtttgtttctcgcatgtttcatcctaatatttatgcagatggaagtatatgtttggatattcttcagaatcaatggagtccaatttatgatgttgcggcaatacttacatccattcagtcattgctgtgtgatccaaaccccaactcacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10591" stop="14375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10891" g_stop="10972" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10973" i_stop="12977" i_length="2005">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12978" g_stop="13111" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="218" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13112" i_stop="13229" i_length="118">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13230" g_stop="13255" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="244" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13256" i_stop="13798" i_length="543">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13799" g_stop="13888" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="334" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13889" i_stop="13980" i_length="92">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="0.624" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13981" g_stop="14069" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="423" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E297446" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10891" e_stop="10972"/>
          <exon e_start="12978" e_stop="13111"/>
          <exon e_start="13230" e_stop="13255"/>
          <exon e_start="13799" e_stop="13888"/>
          <exon e_start="13981" e_stop="14069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAGGGGCAGCTACGAGAGAA-CACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTGGTAAGTCCTTTGATTTTATATCTTCAATTTCCGATGGATCTTTGGAGTTCAAGGAAACTGGACAGGAAACTGATCTTTTGTTAAAAGCGAAAGCGGTTAAATTGGATAATTCTAATTTAGTTTGGAGAGTGTTTAAGAATTTTATGTGATTGTGCTTTTGCGACAATTAGCGAGAAGTTTTTGATCTTCAGTAAATAGTGTTATATTAGGGGAATTGTATGTGCGAGCCCTAATTCATGTGTGCTACAGTTGATTATTGTTATTTATTGTTCTGGAATTTGAGCTTTGTTACTTGATTGAGATGATCATAATTAGATCATGAGTTAAGCCAAATGAGAACTTGATTTATACCTGGATGACTGTGTTAAAGTGATATAAACAACTTTTACATACTTTTAATCCTGAAGTGGTGTTTAGAACTAAAATTTTTGACTTAGGTCATAAGTTTGAACCATGCACCAAGCGAATTAAAGTGCAGTATTTAAGTGGAGGAGGGTAGAGGGCTGGGCTCATCATCCCCAAGTTTCAAAGTGCGTAAGGGTTGGCTCTAGACAGATTTTATGGGTCATTAAATATAATAAAGGGCAAACAGAAAAAGCTCAATAGTAGTTCTCTTTTGTTGGGTTTGTTAACTAGTACTCGAGCATGTATTGTAGCATGTGTATCTCTTGCAAATTAGTATTAATGTTTTAAAATGATATAAAATATTAAAGTATGTATGTGATGGAAATCATAGGAGAAAAATACAAGTGCGGATTGATGAATGATTAGCCTATTGGACTGATATTTATTGTCATCGCAAAGCGCTAACGCCATCGCCGAAATGGTTTCTTTGGGGAGAAAAAGGTTTCCTTTTGTACCTTCTTCTAATATCGTTGGACCATGATAGTGAGTGGATGAAGCAGAAATTACCATTTGCGTTGAATCCATGAATAAAAAAAAGTAAAATTACAAGGATAGCAAGTTAATAAGGAAGAGAAACAAATAAAATTAAGGCGGACTGGCTTGGGAGTCTCTTGTAATTGGCTCCGTTTGTCATTTGAACCCTCCTACTTACTACTTCCCAAATGAACTCCTAAACTCGACAGAACTCTACTTTGTAGACCCTTTTCTCATCCTCTCAGTGTGTGTATAATACAATTGCTTGCATGTCGAATTCCAAGTCATTTTATAATGAGACAGAAAAAGTTACATATTAAAAATTAAATAATATACAACAAAGTAATAATATTTTTTCTGATTGTACCTCCTTTTCCCATCCCCCCCAAAAAAAAAAATAAAATATCCAAACCACCTCCCACTCCTATCCATTTTTTTTTTGATGACAAGGAAAACCCGCAGCCGCTACCCTTTGGGTGCGCACAGGTAAAACCCCTGCTTCTATGCAATAGTTTGCAAACCACATTGGAGAGGATTCCTACTCCTACTCTTTCTCCAATCATTTTTACCCCCAAAAACTTACTCAAAATTCACCAGCCACTATCTTTATCGCAAGATGAACAATGATTAGATTTTTAGGTACGTGTGTTCTTATTTATAGAGCTAATGCAATTTATAGGAAAAACAATGGGTGTTGGAAAGAGATTTTGGGTGTTTTATGTTTGATATGAGTGTTTAGTAGTTGTTGAATGGTAGTTTTTCCTTTTTGTTGGAAATTTAAGTACATAGAAATGGTAAATGGGTCAGCCGGCAAAGATTGATTCTTAGTGTGATACCAATGGTTGCAAATTACACTCGAGGTTTTTAAGAAGAAGAAGAGTAGAAAATTTGGAAATTTCATAGTTTGAAAATGAGAGGAAACCCCTCTATTTAGAGACAACAAATAGTAGTATGAATAGTTGTTAATTGTGCTTTATTAGAAAAGTCAGAATCTTCAGTAACGTCACAATTCTTCAATATGAAAACGTGTCTATTTATAATATAATATAGATAAATATAAATTATAAAATATAGAGAATGCTTTTAAGGTAGTATAGATAGATTAATTTGACCATGTGATTTGCAGGTGGTTA-CAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGGGTGAGTTGTGTAATTAAAATACGCCAAATATGTGTTTAATGTCTGTTTGGGGCAGTTGTTATCATATGGTTTGAATAATCTACTTTCTCCTTTCTCTTCGTTTTGGTGTAACCTGCAGTCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTTCCAGTCCTGGCTTTCCAAGTCACTTTTGTATTATCATCTCTTGTCAGTTTATTACTCTCTGCCAAAAGTTAAGGTTGTTGGTGTTAGCAAGTGCGTCCTGTGGCTTTTGTTACCTTCGCCATCCTTTTCTTTTGACATAATATGATTTCTTTTTCATATCGCCTTAGTTTTGATATGAATTAATTAGTTCGGTTGTAACTATACTATTTGAGAACATCAGGTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATAGTAAGTTGGAGTTCAAGATTTGATTTTTATTTGTCAACAGTGGATAGGAATAGTAAATTTTATGTCTGGAATTGTTCTTCGTTTTTTTCCAGTTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTACATCCATTCAG</genome_strand>
        <mrna_strand>CTCCAGGGGCAGCTACGAGAGAACCACAAAGCACAGGACCGTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTACCAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGG......................................................................................................................TCCTGATGACACTCCTTGGGATGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATA............................................................................................TTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTACATCCATTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289888" ref_strand="+" ref_description="SGN-E289888 [cLET-9-C4]">
      <seq>ccaggggcagctacgagagaacacaaagcacaggaccttagctcggaaccctacctcaccgccttgttaccgccgtattggtggttacaatgtcgactccagctagaaagaggctgatgagggatttcaagaggttgcagcaggaccctcctgctggtattagtggtgcacctcaagacaacaacattatgctttggaatgccgtgatatttggtcctgatgacactccttgggatggtggtacgttcaagttgactcttcaattctctgaggattaccccaacaagccaccaacagtgcggtttgtttctcgcatgtttcatcctaatatttatgcagatggaagtatatgtttggatattcttcagaatcaatggagtccaatttatgatgttgcggcaatacttacatccattcagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10593" stop="14369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10893" g_stop="10972" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10973" i_stop="12977" i_length="2005">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12978" g_stop="13111" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="214" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13112" i_stop="13229" i_length="118">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13230" g_stop="13255" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="240" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13256" i_stop="13798" i_length="543">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13799" g_stop="13888" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="330" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13889" i_stop="13980" i_length="92">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="0.624" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13981" g_stop="14069" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="419" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E289888" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10893" e_stop="10972"/>
          <exon e_start="12978" e_stop="13111"/>
          <exon e_start="13230" e_stop="13255"/>
          <exon e_start="13799" e_stop="13888"/>
          <exon e_start="13981" e_stop="14069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTGGTAAGTCCTTTGATTTTATATCTTCAATTTCCGATGGATCTTTGGAGTTCAAGGAAACTGGACAGGAAACTGATCTTTTGTTAAAAGCGAAAGCGGTTAAATTGGATAATTCTAATTTAGTTTGGAGAGTGTTTAAGAATTTTATGTGATTGTGCTTTTGCGACAATTAGCGAGAAGTTTTTGATCTTCAGTAAATAGTGTTATATTAGGGGAATTGTATGTGCGAGCCCTAATTCATGTGTGCTACAGTTGATTATTGTTATTTATTGTTCTGGAATTTGAGCTTTGTTACTTGATTGAGATGATCATAATTAGATCATGAGTTAAGCCAAATGAGAACTTGATTTATACCTGGATGACTGTGTTAAAGTGATATAAACAACTTTTACATACTTTTAATCCTGAAGTGGTGTTTAGAACTAAAATTTTTGACTTAGGTCATAAGTTTGAACCATGCACCAAGCGAATTAAAGTGCAGTATTTAAGTGGAGGAGGGTAGAGGGCTGGGCTCATCATCCCCAAGTTTCAAAGTGCGTAAGGGTTGGCTCTAGACAGATTTTATGGGTCATTAAATATAATAAAGGGCAAACAGAAAAAGCTCAATAGTAGTTCTCTTTTGTTGGGTTTGTTAACTAGTACTCGAGCATGTATTGTAGCATGTGTATCTCTTGCAAATTAGTATTAATGTTTTAAAATGATATAAAATATTAAAGTATGTATGTGATGGAAATCATAGGAGAAAAATACAAGTGCGGATTGATGAATGATTAGCCTATTGGACTGATATTTATTGTCATCGCAAAGCGCTAACGCCATCGCCGAAATGGTTTCTTTGGGGAGAAAAAGGTTTCCTTTTGTACCTTCTTCTAATATCGTTGGACCATGATAGTGAGTGGATGAAGCAGAAATTACCATTTGCGTTGAATCCATGAATAAAAAAAAGTAAAATTACAAGGATAGCAAGTTAATAAGGAAGAGAAACAAATAAAATTAAGGCGGACTGGCTTGGGAGTCTCTTGTAATTGGCTCCGTTTGTCATTTGAACCCTCCTACTTACTACTTCCCAAATGAACTCCTAAACTCGACAGAACTCTACTTTGTAGACCCTTTTCTCATCCTCTCAGTGTGTGTATAATACAATTGCTTGCATGTCGAATTCCAAGTCATTTTATAATGAGACAGAAAAAGTTACATATTAAAAATTAAATAATATACAACAAAGTAATAATATTTTTTCTGATTGTACCTCCTTTTCCCATCCCCCCCAAAAAAAAAAATAAAATATCCAAACCACCTCCCACTCCTATCCATTTTTTTTTTGATGACAAGGAAAACCCGCAGCCGCTACCCTTTGGGTGCGCACAGGTAAAACCCCTGCTTCTATGCAATAGTTTGCAAACCACATTGGAGAGGATTCCTACTCCTACTCTTTCTCCAATCATTTTTACCCCCAAAAACTTACTCAAAATTCACCAGCCACTATCTTTATCGCAAGATGAACAATGATTAGATTTTTAGGTACGTGTGTTCTTATTTATAGAGCTAATGCAATTTATAGGAAAAACAATGGGTGTTGGAAAGAGATTTTGGGTGTTTTATGTTTGATATGAGTGTTTAGTAGTTGTTGAATGGTAGTTTTTCCTTTTTGTTGGAAATTTAAGTACATAGAAATGGTAAATGGGTCAGCCGGCAAAGATTGATTCTTAGTGTGATACCAATGGTTGCAAATTACACTCGAGGTTTTTAAGAAGAAGAAGAGTAGAAAATTTGGAAATTTCATAGTTTGAAAATGAGAGGAAACCCCTCTATTTAGAGACAACAAATAGTAGTATGAATAGTTGTTAATTGTGCTTTATTAGAAAAGTCAGAATCTTCAGTAACGTCACAATTCTTCAATATGAAAACGTGTCTATTTATAATATAATATAGATAAATATAAATTATAAAATATAGAGAATGCTTTTAAGGTAGTATAGATAGATTAATTTGACCATGTGATTTGCAGGTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGGGTGAGTTGTGTAATTAAAATACGCCAAATATGTGTTTAATGTCTGTTTGGGGCAGTTGTTATCATATGGTTTGAATAATCTACTTTCTCCTTTCTCTTCGTTTTGGTGTAACCTGCAGTCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTTCCAGTCCTGGCTTTCCAAGTCACTTTTGTATTATCATCTCTTGTCAGTTTATTACTCTCTGCCAAAAGTTAAGGTTGTTGGTGTTAGCAAGTGCGTCCTGTGGCTTTTGTTACCTTCGCCATCCTTTTCTTTTGACATAATATGATTTCTTTTTCATATCGCCTTAGTTTTGATATGAATTAATTAGTTCGGTTGTAACTATACTATTTGAGAACATCAGGTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATAGTAAGTTGGAGTTCAAGATTTGATTTTTATTTGTCAACAGTGGATAGGAATAGTAAATTTTATGTCTGGAATTGTTCTTCGTTTTTTTCCAGTTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTACATCCATTCAG</genome_strand>
        <mrna_strand>CCAGGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGG......................................................................................................................TCCTGATGACACTCCTTGGGATGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATA............................................................................................TTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTACATCCATTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261305" ref_strand="+" ref_description="SGN-E261305 [cLEG-68-I24]">
      <seq>ccaggggcagctacgagagaacacaaagcacaggaccttagctcggaaccctacctcaccgccttgttaccgccgtattggtggttacaatgtcgactccagctagaaagaggctgatgagggatttcaagaggttgcagcaggaccctcctgctggtattagtggtgcacctcaagacaacaacattatgctttggaatgccgtgatatttggtcctgatgacactccttgggatggtggtacgttcnagttgactcttcnnttctctgaggattaccccaacaagccaccaacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10593" stop="14156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10893" g_stop="10972" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10973" i_stop="12977" i_length="2005">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12978" g_stop="13111" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="214" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13112" i_stop="13229" i_length="118">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13230" g_stop="13255" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="240" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13256" i_stop="13798" i_length="543">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.872" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13799" g_stop="13856" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="298" r_length="58" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E261305" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10893" e_stop="10972"/>
          <exon e_start="12978" e_stop="13111"/>
          <exon e_start="13230" e_stop="13255"/>
          <exon e_start="13799" e_stop="13856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTGGTAAGTCCTTTGATTTTATATCTTCAATTTCCGATGGATCTTTGGAGTTCAAGGAAACTGGACAGGAAACTGATCTTTTGTTAAAAGCGAAAGCGGTTAAATTGGATAATTCTAATTTAGTTTGGAGAGTGTTTAAGAATTTTATGTGATTGTGCTTTTGCGACAATTAGCGAGAAGTTTTTGATCTTCAGTAAATAGTGTTATATTAGGGGAATTGTATGTGCGAGCCCTAATTCATGTGTGCTACAGTTGATTATTGTTATTTATTGTTCTGGAATTTGAGCTTTGTTACTTGATTGAGATGATCATAATTAGATCATGAGTTAAGCCAAATGAGAACTTGATTTATACCTGGATGACTGTGTTAAAGTGATATAAACAACTTTTACATACTTTTAATCCTGAAGTGGTGTTTAGAACTAAAATTTTTGACTTAGGTCATAAGTTTGAACCATGCACCAAGCGAATTAAAGTGCAGTATTTAAGTGGAGGAGGGTAGAGGGCTGGGCTCATCATCCCCAAGTTTCAAAGTGCGTAAGGGTTGGCTCTAGACAGATTTTATGGGTCATTAAATATAATAAAGGGCAAACAGAAAAAGCTCAATAGTAGTTCTCTTTTGTTGGGTTTGTTAACTAGTACTCGAGCATGTATTGTAGCATGTGTATCTCTTGCAAATTAGTATTAATGTTTTAAAATGATATAAAATATTAAAGTATGTATGTGATGGAAATCATAGGAGAAAAATACAAGTGCGGATTGATGAATGATTAGCCTATTGGACTGATATTTATTGTCATCGCAAAGCGCTAACGCCATCGCCGAAATGGTTTCTTTGGGGAGAAAAAGGTTTCCTTTTGTACCTTCTTCTAATATCGTTGGACCATGATAGTGAGTGGATGAAGCAGAAATTACCATTTGCGTTGAATCCATGAATAAAAAAAAGTAAAATTACAAGGATAGCAAGTTAATAAGGAAGAGAAACAAATAAAATTAAGGCGGACTGGCTTGGGAGTCTCTTGTAATTGGCTCCGTTTGTCATTTGAACCCTCCTACTTACTACTTCCCAAATGAACTCCTAAACTCGACAGAACTCTACTTTGTAGACCCTTTTCTCATCCTCTCAGTGTGTGTATAATACAATTGCTTGCATGTCGAATTCCAAGTCATTTTATAATGAGACAGAAAAAGTTACATATTAAAAATTAAATAATATACAACAAAGTAATAATATTTTTTCTGATTGTACCTCCTTTTCCCATCCCCCCCAAAAAAAAAAATAAAATATCCAAACCACCTCCCACTCCTATCCATTTTTTTTTTGATGACAAGGAAAACCCGCAGCCGCTACCCTTTGGGTGCGCACAGGTAAAACCCCTGCTTCTATGCAATAGTTTGCAAACCACATTGGAGAGGATTCCTACTCCTACTCTTTCTCCAATCATTTTTACCCCCAAAAACTTACTCAAAATTCACCAGCCACTATCTTTATCGCAAGATGAACAATGATTAGATTTTTAGGTACGTGTGTTCTTATTTATAGAGCTAATGCAATTTATAGGAAAAACAATGGGTGTTGGAAAGAGATTTTGGGTGTTTTATGTTTGATATGAGTGTTTAGTAGTTGTTGAATGGTAGTTTTTCCTTTTTGTTGGAAATTTAAGTACATAGAAATGGTAAATGGGTCAGCCGGCAAAGATTGATTCTTAGTGTGATACCAATGGTTGCAAATTACACTCGAGGTTTTTAAGAAGAAGAAGAGTAGAAAATTTGGAAATTTCATAGTTTGAAAATGAGAGGAAACCCCTCTATTTAGAGACAACAAATAGTAGTATGAATAGTTGTTAATTGTGCTTTATTAGAAAAGTCAGAATCTTCAGTAACGTCACAATTCTTCAATATGAAAACGTGTCTATTTATAATATAATATAGATAAATATAAATTATAAAATATAGAGAATGCTTTTAAGGTAGTATAGATAGATTAATTTGACCATGTGATTTGCAGGTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGGGTGAGTTGTGTAATTAAAATACGCCAAATATGTGTTTAATGTCTGTTTGGGGCAGTTGTTATCATATGGTTTGAATAATCTACTTTCTCCTTTCTCTTCGTTTTGGTGTAACCTGCAGTCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTTCCAGTCCTGGCTTTCCAAGTCACTTTTGTATTATCATCTCTTGTCAGTTTATTACTCTCTGCCAAAAGTTAAGGTTGTTGGTGTTAGCAAGTGCGTCCTGTGGCTTTTGTTACCTTCGCCATCCTTTTCTTTTGACATAATATGATTTCTTTTTCATATCGCCTTAGTTTTGATATGAATTAATTAGTTCGGTTGTAACTATACTATTTGAGAACATCAGGTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGT</genome_strand>
        <mrna_strand>CCAGGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGG......................................................................................................................TCCTGATGACACTCCTTGGGATGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTTCNAGTTGACTCTTCNNTTCTCTGAGGATTACCCCAACAAGCCACCAACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262571" ref_strand="+" ref_description="SGN-E262571 [cLEG-63-K2]">
      <seq>caggggcagctacgagagaacacaaagcacaggaccttagctcggaaccctacctcaccgccttgttaccgccgtattggtggttacaatgtcgactccagctagaaagaggctgatgagggatttcaagaggttgcagcaggaccctcctgctggtattagtggtgcacctcaagacaacaacattatgctttggaatgccgtgatattttggtcctgatgacactccttgggatggtggtacgttcaagttgactcttcaattctctgaggattaccccaacaagccaccaacagtgcgggttgtttctcgcatgtttcatcctaatatttatgcagatggaagtatatgtttggatattcttcagaatcaatggagtcccatttatgatgttgcggcaatacttacatccattcagtcattgctgtgtgatccaaaacccaactcacctgcaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10594" stop="14375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10894" g_stop="10972" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10973" i_stop="12977" i_length="2005">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12978" g_stop="13111" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="214" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13112" i_stop="13229" i_length="118">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13230" g_stop="13255" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="240" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13256" i_stop="13798" i_length="543">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13799" g_stop="13888" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="330" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13889" i_stop="13980" i_length="92">
            <donor d_prob="0.829" d_score="0.98"/>
            <acceptor a_prob="0.624" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13981" g_stop="14069" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="419" r_length="89" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E262571" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10894" e_stop="10972"/>
          <exon e_start="12978" e_stop="13111"/>
          <exon e_start="13230" e_stop="13255"/>
          <exon e_start="13799" e_stop="13888"/>
          <exon e_start="13981" e_stop="14069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTGGTAAGTCCTTTGATTTTATATCTTCAATTTCCGATGGATCTTTGGAGTTCAAGGAAACTGGACAGGAAACTGATCTTTTGTTAAAAGCGAAAGCGGTTAAATTGGATAATTCTAATTTAGTTTGGAGAGTGTTTAAGAATTTTATGTGATTGTGCTTTTGCGACAATTAGCGAGAAGTTTTTGATCTTCAGTAAATAGTGTTATATTAGGGGAATTGTATGTGCGAGCCCTAATTCATGTGTGCTACAGTTGATTATTGTTATTTATTGTTCTGGAATTTGAGCTTTGTTACTTGATTGAGATGATCATAATTAGATCATGAGTTAAGCCAAATGAGAACTTGATTTATACCTGGATGACTGTGTTAAAGTGATATAAACAACTTTTACATACTTTTAATCCTGAAGTGGTGTTTAGAACTAAAATTTTTGACTTAGGTCATAAGTTTGAACCATGCACCAAGCGAATTAAAGTGCAGTATTTAAGTGGAGGAGGGTAGAGGGCTGGGCTCATCATCCCCAAGTTTCAAAGTGCGTAAGGGTTGGCTCTAGACAGATTTTATGGGTCATTAAATATAATAAAGGGCAAACAGAAAAAGCTCAATAGTAGTTCTCTTTTGTTGGGTTTGTTAACTAGTACTCGAGCATGTATTGTAGCATGTGTATCTCTTGCAAATTAGTATTAATGTTTTAAAATGATATAAAATATTAAAGTATGTATGTGATGGAAATCATAGGAGAAAAATACAAGTGCGGATTGATGAATGATTAGCCTATTGGACTGATATTTATTGTCATCGCAAAGCGCTAACGCCATCGCCGAAATGGTTTCTTTGGGGAGAAAAAGGTTTCCTTTTGTACCTTCTTCTAATATCGTTGGACCATGATAGTGAGTGGATGAAGCAGAAATTACCATTTGCGTTGAATCCATGAATAAAAAAAAGTAAAATTACAAGGATAGCAAGTTAATAAGGAAGAGAAACAAATAAAATTAAGGCGGACTGGCTTGGGAGTCTCTTGTAATTGGCTCCGTTTGTCATTTGAACCCTCCTACTTACTACTTCCCAAATGAACTCCTAAACTCGACAGAACTCTACTTTGTAGACCCTTTTCTCATCCTCTCAGTGTGTGTATAATACAATTGCTTGCATGTCGAATTCCAAGTCATTTTATAATGAGACAGAAAAAGTTACATATTAAAAATTAAATAATATACAACAAAGTAATAATATTTTTTCTGATTGTACCTCCTTTTCCCATCCCCCCCAAAAAAAAAAATAAAATATCCAAACCACCTCCCACTCCTATCCATTTTTTTTTTGATGACAAGGAAAACCCGCAGCCGCTACCCTTTGGGTGCGCACAGGTAAAACCCCTGCTTCTATGCAATAGTTTGCAAACCACATTGGAGAGGATTCCTACTCCTACTCTTTCTCCAATCATTTTTACCCCCAAAAACTTACTCAAAATTCACCAGCCACTATCTTTATCGCAAGATGAACAATGATTAGATTTTTAGGTACGTGTGTTCTTATTTATAGAGCTAATGCAATTTATAGGAAAAACAATGGGTGTTGGAAAGAGATTTTGGGTGTTTTATGTTTGATATGAGTGTTTAGTAGTTGTTGAATGGTAGTTTTTCCTTTTTGTTGGAAATTTAAGTACATAGAAATGGTAAATGGGTCAGCCGGCAAAGATTGATTCTTAGTGTGATACCAATGGTTGCAAATTACACTCGAGGTTTTTAAGAAGAAGAAGAGTAGAAAATTTGGAAATTTCATAGTTTGAAAATGAGAGGAAACCCCTCTATTTAGAGACAACAAATAGTAGTATGAATAGTTGTTAATTGTGCTTTATTAGAAAAGTCAGAATCTTCAGTAACGTCACAATTCTTCAATATGAAAACGTGTCTATTTATAATATAATATAGATAAATATAAATTATAAAATATAGAGAATGCTTTTAAGGTAGTATAGATAGATTAATTTGACCATGTGATTTGCAGGTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATA-TTTGGGTGAGTTGTGTAATTAAAATACGCCAAATATGTGTTTAATGTCTGTTTGGGGCAGTTGTTATCATATGGTTTGAATAATCTACTTTCTCCTTTCTCTTCGTTTTGGTGTAACCTGCAGTCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTTCCAGTCCTGGCTTTCCAAGTCACTTTTGTATTATCATCTCTTGTCAGTTTATTACTCTCTGCCAAAAGTTAAGGTTGTTGGTGTTAGCAAGTGCGTCCTGTGGCTTTTGTTACCTTCGCCATCCTTTTCTTTTGACATAATATGATTTCTTTTTCATATCGCCTTAGTTTTGATATGAATTAATTAGTTCGGTTGTAACTATACTATTTGAGAACATCAGGTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATAGTAAGTTGGAGTTCAAGATTTGATTTTTATTTGTCAACAGTGGATAGGAATAGTAAATTTTATGTCTGGAATTGTTCTTCGTTTTTTTCCAGTTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTACATCCATTCAG</genome_strand>
        <mrna_strand>CAGGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTTGG......................................................................................................................TCCTGATGACACTCCTTGGGATGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGGTTGTTTCTCGCATGTTTCATCCTAATA............................................................................................TTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCCATTTATGATGTTGCGGCAATACTTACATCCATTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264859" ref_strand="+" ref_description="SGN-E264859 [cLEG-71-K8]">
      <seq>caggggcagctacgagagaacacaaagcacaggaccttagctcggaaccctacctcaccgccttgttaccgccgtattggtggttacaatgtcgactccagctagaaagaggctgatgagggatttcaagaggttgcagcaggaccctcctgctggtattagtggtgcacctcaagacaacaacattatgctttggaatgccgtgatatttggtcctgatgacactccttgggatggtggtacgttcaagttgactcttcaattctctgaggattaccccaacaagccaccaacagtgcggtttgtttctcgcatgtttcatcctaatatttatgcagatggaagtatatgtttggatattcttcagaatcaatggagtccaatttatgatgttgcggcaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10594" stop="14356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10894" g_stop="10972" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10973" i_stop="12977" i_length="2005">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12978" g_stop="13111" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="213" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13112" i_stop="13229" i_length="118">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13230" g_stop="13255" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="239" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13256" i_stop="13798" i_length="543">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13799" g_stop="13888" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="329" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13889" i_stop="13980" i_length="92">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="0.624" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13981" g_stop="14056" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="405" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E264859" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10894" e_stop="10972"/>
          <exon e_start="12978" e_stop="13111"/>
          <exon e_start="13230" e_stop="13255"/>
          <exon e_start="13799" e_stop="13888"/>
          <exon e_start="13981" e_stop="14056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTGGTAAGTCCTTTGATTTTATATCTTCAATTTCCGATGGATCTTTGGAGTTCAAGGAAACTGGACAGGAAACTGATCTTTTGTTAAAAGCGAAAGCGGTTAAATTGGATAATTCTAATTTAGTTTGGAGAGTGTTTAAGAATTTTATGTGATTGTGCTTTTGCGACAATTAGCGAGAAGTTTTTGATCTTCAGTAAATAGTGTTATATTAGGGGAATTGTATGTGCGAGCCCTAATTCATGTGTGCTACAGTTGATTATTGTTATTTATTGTTCTGGAATTTGAGCTTTGTTACTTGATTGAGATGATCATAATTAGATCATGAGTTAAGCCAAATGAGAACTTGATTTATACCTGGATGACTGTGTTAAAGTGATATAAACAACTTTTACATACTTTTAATCCTGAAGTGGTGTTTAGAACTAAAATTTTTGACTTAGGTCATAAGTTTGAACCATGCACCAAGCGAATTAAAGTGCAGTATTTAAGTGGAGGAGGGTAGAGGGCTGGGCTCATCATCCCCAAGTTTCAAAGTGCGTAAGGGTTGGCTCTAGACAGATTTTATGGGTCATTAAATATAATAAAGGGCAAACAGAAAAAGCTCAATAGTAGTTCTCTTTTGTTGGGTTTGTTAACTAGTACTCGAGCATGTATTGTAGCATGTGTATCTCTTGCAAATTAGTATTAATGTTTTAAAATGATATAAAATATTAAAGTATGTATGTGATGGAAATCATAGGAGAAAAATACAAGTGCGGATTGATGAATGATTAGCCTATTGGACTGATATTTATTGTCATCGCAAAGCGCTAACGCCATCGCCGAAATGGTTTCTTTGGGGAGAAAAAGGTTTCCTTTTGTACCTTCTTCTAATATCGTTGGACCATGATAGTGAGTGGATGAAGCAGAAATTACCATTTGCGTTGAATCCATGAATAAAAAAAAGTAAAATTACAAGGATAGCAAGTTAATAAGGAAGAGAAACAAATAAAATTAAGGCGGACTGGCTTGGGAGTCTCTTGTAATTGGCTCCGTTTGTCATTTGAACCCTCCTACTTACTACTTCCCAAATGAACTCCTAAACTCGACAGAACTCTACTTTGTAGACCCTTTTCTCATCCTCTCAGTGTGTGTATAATACAATTGCTTGCATGTCGAATTCCAAGTCATTTTATAATGAGACAGAAAAAGTTACATATTAAAAATTAAATAATATACAACAAAGTAATAATATTTTTTCTGATTGTACCTCCTTTTCCCATCCCCCCCAAAAAAAAAAATAAAATATCCAAACCACCTCCCACTCCTATCCATTTTTTTTTTGATGACAAGGAAAACCCGCAGCCGCTACCCTTTGGGTGCGCACAGGTAAAACCCCTGCTTCTATGCAATAGTTTGCAAACCACATTGGAGAGGATTCCTACTCCTACTCTTTCTCCAATCATTTTTACCCCCAAAAACTTACTCAAAATTCACCAGCCACTATCTTTATCGCAAGATGAACAATGATTAGATTTTTAGGTACGTGTGTTCTTATTTATAGAGCTAATGCAATTTATAGGAAAAACAATGGGTGTTGGAAAGAGATTTTGGGTGTTTTATGTTTGATATGAGTGTTTAGTAGTTGTTGAATGGTAGTTTTTCCTTTTTGTTGGAAATTTAAGTACATAGAAATGGTAAATGGGTCAGCCGGCAAAGATTGATTCTTAGTGTGATACCAATGGTTGCAAATTACACTCGAGGTTTTTAAGAAGAAGAAGAGTAGAAAATTTGGAAATTTCATAGTTTGAAAATGAGAGGAAACCCCTCTATTTAGAGACAACAAATAGTAGTATGAATAGTTGTTAATTGTGCTTTATTAGAAAAGTCAGAATCTTCAGTAACGTCACAATTCTTCAATATGAAAACGTGTCTATTTATAATATAATATAGATAAATATAAATTATAAAATATAGAGAATGCTTTTAAGGTAGTATAGATAGATTAATTTGACCATGTGATTTGCAGGTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGGGTGAGTTGTGTAATTAAAATACGCCAAATATGTGTTTAATGTCTGTTTGGGGCAGTTGTTATCATATGGTTTGAATAATCTACTTTCTCCTTTCTCTTCGTTTTGGTGTAACCTGCAGTCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTTCCAGTCCTGGCTTTCCAAGTCACTTTTGTATTATCATCTCTTGTCAGTTTATTACTCTCTGCCAAAAGTTAAGGTTGTTGGTGTTAGCAAGTGCGTCCTGTGGCTTTTGTTACCTTCGCCATCCTTTTCTTTTGACATAATATGATTTCTTTTTCATATCGCCTTAGTTTTGATATGAATTAATTAGTTCGGTTGTAACTATACTATTTGAGAACATCAGGTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATAGTAAGTTGGAGTTCAAGATTTGATTTTTATTTGTCAACAGTGGATAGGAATAGTAAATTTTATGTCTGGAATTGTTCTTCGTTTTTTTCCAGTTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACT</genome_strand>
        <mrna_strand>CAGGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGG......................................................................................................................TCCTGATGACACTCCTTGGGATGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATA............................................................................................TTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247204" ref_strand="+" ref_description="SGN-E247204 [cLEF-46-O9]">
      <seq>aggggcagctacgagagaacacaaagcacaggaccttagctcggaaccgtacctcaccgccttgttaccgccgtattggtggttacaatgtcgactccagctagaaagaggctgatgagggatttcaagaggttgcagcaggaccctcctgctggtattagtggtgcacctcaagacaacaacattatgctttggaatgccgtgatatttggtcctgatgacactccttgggatggtggtacgttcaagttgactcttcaattctctgaggattaccccaacaagccaccaacagtgcggtttgtttctcgcatgtttcatcctaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10595" stop="14190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10895" g_stop="10972" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10973" i_stop="12977" i_length="2005">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12978" g_stop="13111" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="212" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13112" i_stop="13229" i_length="118">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13230" g_stop="13255" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="238" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13256" i_stop="13798" i_length="543">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13799" g_stop="13888" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="328" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E247204" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10895" e_stop="10972"/>
          <exon e_start="12978" e_stop="13111"/>
          <exon e_start="13230" e_stop="13255"/>
          <exon e_start="13799" e_stop="13888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTGGTAAGTCCTTTGATTTTATATCTTCAATTTCCGATGGATCTTTGGAGTTCAAGGAAACTGGACAGGAAACTGATCTTTTGTTAAAAGCGAAAGCGGTTAAATTGGATAATTCTAATTTAGTTTGGAGAGTGTTTAAGAATTTTATGTGATTGTGCTTTTGCGACAATTAGCGAGAAGTTTTTGATCTTCAGTAAATAGTGTTATATTAGGGGAATTGTATGTGCGAGCCCTAATTCATGTGTGCTACAGTTGATTATTGTTATTTATTGTTCTGGAATTTGAGCTTTGTTACTTGATTGAGATGATCATAATTAGATCATGAGTTAAGCCAAATGAGAACTTGATTTATACCTGGATGACTGTGTTAAAGTGATATAAACAACTTTTACATACTTTTAATCCTGAAGTGGTGTTTAGAACTAAAATTTTTGACTTAGGTCATAAGTTTGAACCATGCACCAAGCGAATTAAAGTGCAGTATTTAAGTGGAGGAGGGTAGAGGGCTGGGCTCATCATCCCCAAGTTTCAAAGTGCGTAAGGGTTGGCTCTAGACAGATTTTATGGGTCATTAAATATAATAAAGGGCAAACAGAAAAAGCTCAATAGTAGTTCTCTTTTGTTGGGTTTGTTAACTAGTACTCGAGCATGTATTGTAGCATGTGTATCTCTTGCAAATTAGTATTAATGTTTTAAAATGATATAAAATATTAAAGTATGTATGTGATGGAAATCATAGGAGAAAAATACAAGTGCGGATTGATGAATGATTAGCCTATTGGACTGATATTTATTGTCATCGCAAAGCGCTAACGCCATCGCCGAAATGGTTTCTTTGGGGAGAAAAAGGTTTCCTTTTGTACCTTCTTCTAATATCGTTGGACCATGATAGTGAGTGGATGAAGCAGAAATTACCATTTGCGTTGAATCCATGAATAAAAAAAAGTAAAATTACAAGGATAGCAAGTTAATAAGGAAGAGAAACAAATAAAATTAAGGCGGACTGGCTTGGGAGTCTCTTGTAATTGGCTCCGTTTGTCATTTGAACCCTCCTACTTACTACTTCCCAAATGAACTCCTAAACTCGACAGAACTCTACTTTGTAGACCCTTTTCTCATCCTCTCAGTGTGTGTATAATACAATTGCTTGCATGTCGAATTCCAAGTCATTTTATAATGAGACAGAAAAAGTTACATATTAAAAATTAAATAATATACAACAAAGTAATAATATTTTTTCTGATTGTACCTCCTTTTCCCATCCCCCCCAAAAAAAAAAATAAAATATCCAAACCACCTCCCACTCCTATCCATTTTTTTTTTGATGACAAGGAAAACCCGCAGCCGCTACCCTTTGGGTGCGCACAGGTAAAACCCCTGCTTCTATGCAATAGTTTGCAAACCACATTGGAGAGGATTCCTACTCCTACTCTTTCTCCAATCATTTTTACCCCCAAAAACTTACTCAAAATTCACCAGCCACTATCTTTATCGCAAGATGAACAATGATTAGATTTTTAGGTACGTGTGTTCTTATTTATAGAGCTAATGCAATTTATAGGAAAAACAATGGGTGTTGGAAAGAGATTTTGGGTGTTTTATGTTTGATATGAGTGTTTAGTAGTTGTTGAATGGTAGTTTTTCCTTTTTGTTGGAAATTTAAGTACATAGAAATGGTAAATGGGTCAGCCGGCAAAGATTGATTCTTAGTGTGATACCAATGGTTGCAAATTACACTCGAGGTTTTTAAGAAGAAGAAGAGTAGAAAATTTGGAAATTTCATAGTTTGAAAATGAGAGGAAACCCCTCTATTTAGAGACAACAAATAGTAGTATGAATAGTTGTTAATTGTGCTTTATTAGAAAAGTCAGAATCTTCAGTAACGTCACAATTCTTCAATATGAAAACGTGTCTATTTATAATATAATATAGATAAATATAAATTATAAAATATAGAGAATGCTTTTAAGGTAGTATAGATAGATTAATTTGACCATGTGATTTGCAGGTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGGGTGAGTTGTGTAATTAAAATACGCCAAATATGTGTTTAATGTCTGTTTGGGGCAGTTGTTATCATATGGTTTGAATAATCTACTTTCTCCTTTCTCTTCGTTTTGGTGTAACCTGCAGTCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTTCCAGTCCTGGCTTTCCAAGTCACTTTTGTATTATCATCTCTTGTCAGTTTATTACTCTCTGCCAAAAGTTAAGGTTGTTGGTGTTAGCAAGTGCGTCCTGTGGCTTTTGTTACCTTCGCCATCCTTTTCTTTTGACATAATATGATTTCTTTTTCATATCGCCTTAGTTTTGATATGAATTAATTAGTTCGGTTGTAACTATACTATTTGAGAACATCAGGTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATA</genome_strand>
        <mrna_strand>AGGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCGTACCTCACCGCCTTGTTACCGCCGTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGG......................................................................................................................TCCTGATGACACTCCTTGGGATGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246066" ref_strand="+" ref_description="SGN-E246066 [cLEF-54-O22]">
      <seq>ggggcagctacgagagaacacaaagcacaggaccttagctcggaaccctacctcaccgccttgttaccgccgtattggtggttacaatgtcgactccagctagaaagaggctgatgagggatttcaagaggttgcagcaggaccctcctgctggtattagtggtgcacctcaagacaacaacattatgctttggaatgccgtgatatttggtcctgatgacactccttgggatggtggtacgttcaagttgactcttcaattctctgaggattaccccaacaagccaccaacagtgcggtttgtttctcgcatgtttcatcctaatatttatgcagatggaagtatatgtttggatattcttcagaatcaatggagtccaatttatgatgttgcggcaatacttacatccattcagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10596" stop="14369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10896" g_stop="10972" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10973" i_stop="12977" i_length="2005">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12978" g_stop="13111" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="211" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13112" i_stop="13229" i_length="118">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13230" g_stop="13255" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="237" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13256" i_stop="13798" i_length="543">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13799" g_stop="13888" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="327" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13889" i_stop="13980" i_length="92">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="0.624" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13981" g_stop="14069" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="416" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E246066" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10896" e_stop="10972"/>
          <exon e_start="12978" e_stop="13111"/>
          <exon e_start="13230" e_stop="13255"/>
          <exon e_start="13799" e_stop="13888"/>
          <exon e_start="13981" e_stop="14069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTGGTAAGTCCTTTGATTTTATATCTTCAATTTCCGATGGATCTTTGGAGTTCAAGGAAACTGGACAGGAAACTGATCTTTTGTTAAAAGCGAAAGCGGTTAAATTGGATAATTCTAATTTAGTTTGGAGAGTGTTTAAGAATTTTATGTGATTGTGCTTTTGCGACAATTAGCGAGAAGTTTTTGATCTTCAGTAAATAGTGTTATATTAGGGGAATTGTATGTGCGAGCCCTAATTCATGTGTGCTACAGTTGATTATTGTTATTTATTGTTCTGGAATTTGAGCTTTGTTACTTGATTGAGATGATCATAATTAGATCATGAGTTAAGCCAAATGAGAACTTGATTTATACCTGGATGACTGTGTTAAAGTGATATAAACAACTTTTACATACTTTTAATCCTGAAGTGGTGTTTAGAACTAAAATTTTTGACTTAGGTCATAAGTTTGAACCATGCACCAAGCGAATTAAAGTGCAGTATTTAAGTGGAGGAGGGTAGAGGGCTGGGCTCATCATCCCCAAGTTTCAAAGTGCGTAAGGGTTGGCTCTAGACAGATTTTATGGGTCATTAAATATAATAAAGGGCAAACAGAAAAAGCTCAATAGTAGTTCTCTTTTGTTGGGTTTGTTAACTAGTACTCGAGCATGTATTGTAGCATGTGTATCTCTTGCAAATTAGTATTAATGTTTTAAAATGATATAAAATATTAAAGTATGTATGTGATGGAAATCATAGGAGAAAAATACAAGTGCGGATTGATGAATGATTAGCCTATTGGACTGATATTTATTGTCATCGCAAAGCGCTAACGCCATCGCCGAAATGGTTTCTTTGGGGAGAAAAAGGTTTCCTTTTGTACCTTCTTCTAATATCGTTGGACCATGATAGTGAGTGGATGAAGCAGAAATTACCATTTGCGTTGAATCCATGAATAAAAAAAAGTAAAATTACAAGGATAGCAAGTTAATAAGGAAGAGAAACAAATAAAATTAAGGCGGACTGGCTTGGGAGTCTCTTGTAATTGGCTCCGTTTGTCATTTGAACCCTCCTACTTACTACTTCCCAAATGAACTCCTAAACTCGACAGAACTCTACTTTGTAGACCCTTTTCTCATCCTCTCAGTGTGTGTATAATACAATTGCTTGCATGTCGAATTCCAAGTCATTTTATAATGAGACAGAAAAAGTTACATATTAAAAATTAAATAATATACAACAAAGTAATAATATTTTTTCTGATTGTACCTCCTTTTCCCATCCCCCCCAAAAAAAAAAATAAAATATCCAAACCACCTCCCACTCCTATCCATTTTTTTTTTGATGACAAGGAAAACCCGCAGCCGCTACCCTTTGGGTGCGCACAGGTAAAACCCCTGCTTCTATGCAATAGTTTGCAAACCACATTGGAGAGGATTCCTACTCCTACTCTTTCTCCAATCATTTTTACCCCCAAAAACTTACTCAAAATTCACCAGCCACTATCTTTATCGCAAGATGAACAATGATTAGATTTTTAGGTACGTGTGTTCTTATTTATAGAGCTAATGCAATTTATAGGAAAAACAATGGGTGTTGGAAAGAGATTTTGGGTGTTTTATGTTTGATATGAGTGTTTAGTAGTTGTTGAATGGTAGTTTTTCCTTTTTGTTGGAAATTTAAGTACATAGAAATGGTAAATGGGTCAGCCGGCAAAGATTGATTCTTAGTGTGATACCAATGGTTGCAAATTACACTCGAGGTTTTTAAGAAGAAGAAGAGTAGAAAATTTGGAAATTTCATAGTTTGAAAATGAGAGGAAACCCCTCTATTTAGAGACAACAAATAGTAGTATGAATAGTTGTTAATTGTGCTTTATTAGAAAAGTCAGAATCTTCAGTAACGTCACAATTCTTCAATATGAAAACGTGTCTATTTATAATATAATATAGATAAATATAAATTATAAAATATAGAGAATGCTTTTAAGGTAGTATAGATAGATTAATTTGACCATGTGATTTGCAGGTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGGGTGAGTTGTGTAATTAAAATACGCCAAATATGTGTTTAATGTCTGTTTGGGGCAGTTGTTATCATATGGTTTGAATAATCTACTTTCTCCTTTCTCTTCGTTTTGGTGTAACCTGCAGTCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTTCCAGTCCTGGCTTTCCAAGTCACTTTTGTATTATCATCTCTTGTCAGTTTATTACTCTCTGCCAAAAGTTAAGGTTGTTGGTGTTAGCAAGTGCGTCCTGTGGCTTTTGTTACCTTCGCCATCCTTTTCTTTTGACATAATATGATTTCTTTTTCATATCGCCTTAGTTTTGATATGAATTAATTAGTTCGGTTGTAACTATACTATTTGAGAACATCAGGTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATAGTAAGTTGGAGTTCAAGATTTGATTTTTATTTGTCAACAGTGGATAGGAATAGTAAATTTTATGTCTGGAATTGTTCTTCGTTTTTTTCCAGTTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTACATCCATTCAG</genome_strand>
        <mrna_strand>GGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGG......................................................................................................................TCCTGATGACACTCCTTGGGATGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATA............................................................................................TTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTACATCCATTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246012" ref_strand="+" ref_description="SGN-E246012 [cLEF-54-O12]">
      <seq>ggggcagctacgagagaacacaaagcacaggaccttagctcggaaccctacctcaccgccttgttaccgccgtattggtggttacaatgtcgactccagctctaaagaggctgatgagggatttcaagaggttgcagcaggaccctcctgctggtattagtggtgcacctcaagacaacaacattatgctttggaatgccgtgatatttggtcctgatgacactccttgggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10596" stop="13552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10896" g_stop="10972" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10973" i_stop="12977" i_length="2005">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12978" g_stop="13111" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="211" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13112" i_stop="13229" i_length="118">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13230" g_stop="13252" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="234" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E246012" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>234</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10896" e_stop="10972"/>
          <exon e_start="12978" e_stop="13111"/>
          <exon e_start="13230" e_stop="13252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTGGTAAGTCCTTTGATTTTATATCTTCAATTTCCGATGGATCTTTGGAGTTCAAGGAAACTGGACAGGAAACTGATCTTTTGTTAAAAGCGAAAGCGGTTAAATTGGATAATTCTAATTTAGTTTGGAGAGTGTTTAAGAATTTTATGTGATTGTGCTTTTGCGACAATTAGCGAGAAGTTTTTGATCTTCAGTAAATAGTGTTATATTAGGGGAATTGTATGTGCGAGCCCTAATTCATGTGTGCTACAGTTGATTATTGTTATTTATTGTTCTGGAATTTGAGCTTTGTTACTTGATTGAGATGATCATAATTAGATCATGAGTTAAGCCAAATGAGAACTTGATTTATACCTGGATGACTGTGTTAAAGTGATATAAACAACTTTTACATACTTTTAATCCTGAAGTGGTGTTTAGAACTAAAATTTTTGACTTAGGTCATAAGTTTGAACCATGCACCAAGCGAATTAAAGTGCAGTATTTAAGTGGAGGAGGGTAGAGGGCTGGGCTCATCATCCCCAAGTTTCAAAGTGCGTAAGGGTTGGCTCTAGACAGATTTTATGGGTCATTAAATATAATAAAGGGCAAACAGAAAAAGCTCAATAGTAGTTCTCTTTTGTTGGGTTTGTTAACTAGTACTCGAGCATGTATTGTAGCATGTGTATCTCTTGCAAATTAGTATTAATGTTTTAAAATGATATAAAATATTAAAGTATGTATGTGATGGAAATCATAGGAGAAAAATACAAGTGCGGATTGATGAATGATTAGCCTATTGGACTGATATTTATTGTCATCGCAAAGCGCTAACGCCATCGCCGAAATGGTTTCTTTGGGGAGAAAAAGGTTTCCTTTTGTACCTTCTTCTAATATCGTTGGACCATGATAGTGAGTGGATGAAGCAGAAATTACCATTTGCGTTGAATCCATGAATAAAAAAAAGTAAAATTACAAGGATAGCAAGTTAATAAGGAAGAGAAACAAATAAAATTAAGGCGGACTGGCTTGGGAGTCTCTTGTAATTGGCTCCGTTTGTCATTTGAACCCTCCTACTTACTACTTCCCAAATGAACTCCTAAACTCGACAGAACTCTACTTTGTAGACCCTTTTCTCATCCTCTCAGTGTGTGTATAATACAATTGCTTGCATGTCGAATTCCAAGTCATTTTATAATGAGACAGAAAAAGTTACATATTAAAAATTAAATAATATACAACAAAGTAATAATATTTTTTCTGATTGTACCTCCTTTTCCCATCCCCCCCAAAAAAAAAAATAAAATATCCAAACCACCTCCCACTCCTATCCATTTTTTTTTTGATGACAAGGAAAACCCGCAGCCGCTACCCTTTGGGTGCGCACAGGTAAAACCCCTGCTTCTATGCAATAGTTTGCAAACCACATTGGAGAGGATTCCTACTCCTACTCTTTCTCCAATCATTTTTACCCCCAAAAACTTACTCAAAATTCACCAGCCACTATCTTTATCGCAAGATGAACAATGATTAGATTTTTAGGTACGTGTGTTCTTATTTATAGAGCTAATGCAATTTATAGGAAAAACAATGGGTGTTGGAAAGAGATTTTGGGTGTTTTATGTTTGATATGAGTGTTTAGTAGTTGTTGAATGGTAGTTTTTCCTTTTTGTTGGAAATTTAAGTACATAGAAATGGTAAATGGGTCAGCCGGCAAAGATTGATTCTTAGTGTGATACCAATGGTTGCAAATTACACTCGAGGTTTTTAAGAAGAAGAAGAGTAGAAAATTTGGAAATTTCATAGTTTGAAAATGAGAGGAAACCCCTCTATTTAGAGACAACAAATAGTAGTATGAATAGTTGTTAATTGTGCTTTATTAGAAAAGTCAGAATCTTCAGTAACGTCACAATTCTTCAATATGAAAACGTGTCTATTTATAATATAATATAGATAAATATAAATTATAAAATATAGAGAATGCTTTTAAGGTAGTATAGATAGATTAATTTGACCATGTGATTTGCAGGTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGGGTGAGTTGTGTAATTAAAATACGCCAAATATGTGTTTAATGTCTGTTTGGGGCAGTTGTTATCATATGGTTTGAATAATCTACTTTCTCCTTTCTCTTCGTTTTGGTGTAACCTGCAGTCCTGATGACACTCCTTGGGATG</genome_strand>
        <mrna_strand>GGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTACAATGTCGACTCCAGCTCTAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGG......................................................................................................................TCCTGATGACACTCCTTGGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244933" ref_strand="+" ref_description="SGN-E244933 [cLEF-2-I7]">
      <seq>ggcagctacgagagaacacaaagcacaggaccttagctcggaaccctacctcaccgccttgttaccgccgtattggtggttacaatgtcgactccagctagaaagaggctgatgagggatttcaagaggttgcagcaggaccctcctgctggtattagtggtgcacctcaagacaacaacattatgctttggaatgccgtgatatttggtcctgatgacactccttgggatggtggtacgttcaagttgactcttcaattctctgaggattaccccaacaagccaccaacagtgcggtttgtttctcgcatgtttcatcctaatatttatgcagatggaagtatatgtttggatattcttcagaatcaatggagtccaatttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10598" stop="14340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10898" g_stop="10972" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10973" i_stop="12977" i_length="2005">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12978" g_stop="13111" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="209" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13112" i_stop="13229" i_length="118">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13230" g_stop="13255" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="235" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13256" i_stop="13798" i_length="543">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13799" g_stop="13888" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="325" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13889" i_stop="13980" i_length="92">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="0.624" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13981" g_stop="14040" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="385" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E244933" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10898" e_stop="10972"/>
          <exon e_start="12978" e_stop="13111"/>
          <exon e_start="13230" e_stop="13255"/>
          <exon e_start="13799" e_stop="13888"/>
          <exon e_start="13981" e_stop="14040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTGGTAAGTCCTTTGATTTTATATCTTCAATTTCCGATGGATCTTTGGAGTTCAAGGAAACTGGACAGGAAACTGATCTTTTGTTAAAAGCGAAAGCGGTTAAATTGGATAATTCTAATTTAGTTTGGAGAGTGTTTAAGAATTTTATGTGATTGTGCTTTTGCGACAATTAGCGAGAAGTTTTTGATCTTCAGTAAATAGTGTTATATTAGGGGAATTGTATGTGCGAGCCCTAATTCATGTGTGCTACAGTTGATTATTGTTATTTATTGTTCTGGAATTTGAGCTTTGTTACTTGATTGAGATGATCATAATTAGATCATGAGTTAAGCCAAATGAGAACTTGATTTATACCTGGATGACTGTGTTAAAGTGATATAAACAACTTTTACATACTTTTAATCCTGAAGTGGTGTTTAGAACTAAAATTTTTGACTTAGGTCATAAGTTTGAACCATGCACCAAGCGAATTAAAGTGCAGTATTTAAGTGGAGGAGGGTAGAGGGCTGGGCTCATCATCCCCAAGTTTCAAAGTGCGTAAGGGTTGGCTCTAGACAGATTTTATGGGTCATTAAATATAATAAAGGGCAAACAGAAAAAGCTCAATAGTAGTTCTCTTTTGTTGGGTTTGTTAACTAGTACTCGAGCATGTATTGTAGCATGTGTATCTCTTGCAAATTAGTATTAATGTTTTAAAATGATATAAAATATTAAAGTATGTATGTGATGGAAATCATAGGAGAAAAATACAAGTGCGGATTGATGAATGATTAGCCTATTGGACTGATATTTATTGTCATCGCAAAGCGCTAACGCCATCGCCGAAATGGTTTCTTTGGGGAGAAAAAGGTTTCCTTTTGTACCTTCTTCTAATATCGTTGGACCATGATAGTGAGTGGATGAAGCAGAAATTACCATTTGCGTTGAATCCATGAATAAAAAAAAGTAAAATTACAAGGATAGCAAGTTAATAAGGAAGAGAAACAAATAAAATTAAGGCGGACTGGCTTGGGAGTCTCTTGTAATTGGCTCCGTTTGTCATTTGAACCCTCCTACTTACTACTTCCCAAATGAACTCCTAAACTCGACAGAACTCTACTTTGTAGACCCTTTTCTCATCCTCTCAGTGTGTGTATAATACAATTGCTTGCATGTCGAATTCCAAGTCATTTTATAATGAGACAGAAAAAGTTACATATTAAAAATTAAATAATATACAACAAAGTAATAATATTTTTTCTGATTGTACCTCCTTTTCCCATCCCCCCCAAAAAAAAAAATAAAATATCCAAACCACCTCCCACTCCTATCCATTTTTTTTTTGATGACAAGGAAAACCCGCAGCCGCTACCCTTTGGGTGCGCACAGGTAAAACCCCTGCTTCTATGCAATAGTTTGCAAACCACATTGGAGAGGATTCCTACTCCTACTCTTTCTCCAATCATTTTTACCCCCAAAAACTTACTCAAAATTCACCAGCCACTATCTTTATCGCAAGATGAACAATGATTAGATTTTTAGGTACGTGTGTTCTTATTTATAGAGCTAATGCAATTTATAGGAAAAACAATGGGTGTTGGAAAGAGATTTTGGGTGTTTTATGTTTGATATGAGTGTTTAGTAGTTGTTGAATGGTAGTTTTTCCTTTTTGTTGGAAATTTAAGTACATAGAAATGGTAAATGGGTCAGCCGGCAAAGATTGATTCTTAGTGTGATACCAATGGTTGCAAATTACACTCGAGGTTTTTAAGAAGAAGAAGAGTAGAAAATTTGGAAATTTCATAGTTTGAAAATGAGAGGAAACCCCTCTATTTAGAGACAACAAATAGTAGTATGAATAGTTGTTAATTGTGCTTTATTAGAAAAGTCAGAATCTTCAGTAACGTCACAATTCTTCAATATGAAAACGTGTCTATTTATAATATAATATAGATAAATATAAATTATAAAATATAGAGAATGCTTTTAAGGTAGTATAGATAGATTAATTTGACCATGTGATTTGCAGGTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGGGTGAGTTGTGTAATTAAAATACGCCAAATATGTGTTTAATGTCTGTTTGGGGCAGTTGTTATCATATGGTTTGAATAATCTACTTTCTCCTTTCTCTTCGTTTTGGTGTAACCTGCAGTCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTTCCAGTCCTGGCTTTCCAAGTCACTTTTGTATTATCATCTCTTGTCAGTTTATTACTCTCTGCCAAAAGTTAAGGTTGTTGGTGTTAGCAAGTGCGTCCTGTGGCTTTTGTTACCTTCGCCATCCTTTTCTTTTGACATAATATGATTTCTTTTTCATATCGCCTTAGTTTTGATATGAATTAATTAGTTCGGTTGTAACTATACTATTTGAGAACATCAGGTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATAGTAAGTTGGAGTTCAAGATTTGATTTTTATTTGTCAACAGTGGATAGGAATAGTAAATTTTATGTCTGGAATTGTTCTTCGTTTTTTTCCAGTTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATG</genome_strand>
        <mrna_strand>GGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGG......................................................................................................................TCCTGATGACACTCCTTGGGATGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATA............................................................................................TTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249208" ref_strand="+" ref_description="SGN-E249208 [cLEF-50-K10]">
      <seq>ggcagctacgagagaacacaaagcacaggaccttagctcggaaccctacctcaccgggttgttaccgccgtattggtggttacaatgtcgactccagctagaaagaggctgatgagggatttcaagaggttgcagcaggaccctcctgctggtattagtggtgcacctcaagacaacaacattatgctttggaatgccgtgatatttggtcctgatgacactccttgggatggtggtgagttatccttgcatttggtcgttagtgcagtgtggcagaagaatgttaaaggcttaaagcgttgtagttggtgcacatctactgtttatgcattgttgtctgtacaattcaattatgttttaatcatctcagtctctcttttctgtgatttgaaattctgaataatcagtttggagagtcgcacccctcgtcccctcccaggacattccttgcctacgaataagtagtgatgaatgttatgaatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10598" stop="13806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10898" g_stop="10972" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10973" i_stop="12977" i_length="2005">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12978" g_stop="13111" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="209" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13112" i_stop="13229" i_length="118">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13230" g_stop="13506" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="486" r_length="277" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E249208" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10898" e_stop="10972"/>
          <exon e_start="12978" e_stop="13111"/>
          <exon e_start="13230" e_stop="13506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTGGTAAGTCCTTTGATTTTATATCTTCAATTTCCGATGGATCTTTGGAGTTCAAGGAAACTGGACAGGAAACTGATCTTTTGTTAAAAGCGAAAGCGGTTAAATTGGATAATTCTAATTTAGTTTGGAGAGTGTTTAAGAATTTTATGTGATTGTGCTTTTGCGACAATTAGCGAGAAGTTTTTGATCTTCAGTAAATAGTGTTATATTAGGGGAATTGTATGTGCGAGCCCTAATTCATGTGTGCTACAGTTGATTATTGTTATTTATTGTTCTGGAATTTGAGCTTTGTTACTTGATTGAGATGATCATAATTAGATCATGAGTTAAGCCAAATGAGAACTTGATTTATACCTGGATGACTGTGTTAAAGTGATATAAACAACTTTTACATACTTTTAATCCTGAAGTGGTGTTTAGAACTAAAATTTTTGACTTAGGTCATAAGTTTGAACCATGCACCAAGCGAATTAAAGTGCAGTATTTAAGTGGAGGAGGGTAGAGGGCTGGGCTCATCATCCCCAAGTTTCAAAGTGCGTAAGGGTTGGCTCTAGACAGATTTTATGGGTCATTAAATATAATAAAGGGCAAACAGAAAAAGCTCAATAGTAGTTCTCTTTTGTTGGGTTTGTTAACTAGTACTCGAGCATGTATTGTAGCATGTGTATCTCTTGCAAATTAGTATTAATGTTTTAAAATGATATAAAATATTAAAGTATGTATGTGATGGAAATCATAGGAGAAAAATACAAGTGCGGATTGATGAATGATTAGCCTATTGGACTGATATTTATTGTCATCGCAAAGCGCTAACGCCATCGCCGAAATGGTTTCTTTGGGGAGAAAAAGGTTTCCTTTTGTACCTTCTTCTAATATCGTTGGACCATGATAGTGAGTGGATGAAGCAGAAATTACCATTTGCGTTGAATCCATGAATAAAAAAAAGTAAAATTACAAGGATAGCAAGTTAATAAGGAAGAGAAACAAATAAAATTAAGGCGGACTGGCTTGGGAGTCTCTTGTAATTGGCTCCGTTTGTCATTTGAACCCTCCTACTTACTACTTCCCAAATGAACTCCTAAACTCGACAGAACTCTACTTTGTAGACCCTTTTCTCATCCTCTCAGTGTGTGTATAATACAATTGCTTGCATGTCGAATTCCAAGTCATTTTATAATGAGACAGAAAAAGTTACATATTAAAAATTAAATAATATACAACAAAGTAATAATATTTTTTCTGATTGTACCTCCTTTTCCCATCCCCCCCAAAAAAAAAAATAAAATATCCAAACCACCTCCCACTCCTATCCATTTTTTTTTTGATGACAAGGAAAACCCGCAGCCGCTACCCTTTGGGTGCGCACAGGTAAAACCCCTGCTTCTATGCAATAGTTTGCAAACCACATTGGAGAGGATTCCTACTCCTACTCTTTCTCCAATCATTTTTACCCCCAAAAACTTACTCAAAATTCACCAGCCACTATCTTTATCGCAAGATGAACAATGATTAGATTTTTAGGTACGTGTGTTCTTATTTATAGAGCTAATGCAATTTATAGGAAAAACAATGGGTGTTGGAAAGAGATTTTGGGTGTTTTATGTTTGATATGAGTGTTTAGTAGTTGTTGAATGGTAGTTTTTCCTTTTTGTTGGAAATTTAAGTACATAGAAATGGTAAATGGGTCAGCCGGCAAAGATTGATTCTTAGTGTGATACCAATGGTTGCAAATTACACTCGAGGTTTTTAAGAAGAAGAAGAGTAGAAAATTTGGAAATTTCATAGTTTGAAAATGAGAGGAAACCCCTCTATTTAGAGACAACAAATAGTAGTATGAATAGTTGTTAATTGTGCTTTATTAGAAAAGTCAGAATCTTCAGTAACGTCACAATTCTTCAATATGAAAACGTGTCTATTTATAATATAATATAGATAAATATAAATTATAAAATATAGAGAATGCTTTTAAGGTAGTATAGATAGATTAATTTGACCATGTGATTTGCAGGTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGGGTGAGTTGTGTAATTAAAATACGCCAAATATGTGTTTAATGTCTGTTTGGGGCAGTTGTTATCATATGGTTTGAATAATCTACTTTCTCCTTTCTCTTCGTTTTGGTGTAACCTGCAGTCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATC</genome_strand>
        <mrna_strand>GGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGGGTTGTTACCGCCGTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGG......................................................................................................................TCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309772" ref_strand="+" ref_description="SGN-E309772 [cLEY-26-L12]">
      <seq>gagagagaacacaaagcacaggaccttagctcggaaccctacctcaccgccttgttaccgccgtattggtggttacaatgtcgactccagctagaaagaggctgatgagggatttcaagaggttgcagcaggaccctcctgctggtattagtggtgcacctcaagacaacaacattatgctttggaatgccgtgatatttggtcctgatgacactccttgggatggtggtgagttatccttgcatttggtcgttagtgcagtgtggcagaagaatgttaaaggcttaaagcgttgtagttggtgcacatctactgtttatgcattgttgtctgtacaattcaattatgttttaatcatctcagtctctcttttctgtgatttgaaattctgaataatcagtttggagagtcgcacccctcgtcccctcccaggacattccttgcctacgaataagtagtgatgaatgttatgaatcatctcatagaggtgatgcatattctagttttggaaatgcttgaatcctttctttgatctcccagtccaagcatttccagtcctggctttccaagtcacttttgtattatcatctcttgtcagtttattactctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10607" stop="13937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10905" g_stop="10972" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10973" i_stop="12977" i_length="2005">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12978" g_stop="13111" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="202" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13112" i_stop="13229" i_length="118">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13230" g_stop="13637" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="610" r_length="408" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E309772" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10905" e_stop="10972"/>
          <exon e_start="12978" e_stop="13111"/>
          <exon e_start="13230" e_stop="13637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTGGTAAGTCCTTTGATTTTATATCTTCAATTTCCGATGGATCTTTGGAGTTCAAGGAAACTGGACAGGAAACTGATCTTTTGTTAAAAGCGAAAGCGGTTAAATTGGATAATTCTAATTTAGTTTGGAGAGTGTTTAAGAATTTTATGTGATTGTGCTTTTGCGACAATTAGCGAGAAGTTTTTGATCTTCAGTAAATAGTGTTATATTAGGGGAATTGTATGTGCGAGCCCTAATTCATGTGTGCTACAGTTGATTATTGTTATTTATTGTTCTGGAATTTGAGCTTTGTTACTTGATTGAGATGATCATAATTAGATCATGAGTTAAGCCAAATGAGAACTTGATTTATACCTGGATGACTGTGTTAAAGTGATATAAACAACTTTTACATACTTTTAATCCTGAAGTGGTGTTTAGAACTAAAATTTTTGACTTAGGTCATAAGTTTGAACCATGCACCAAGCGAATTAAAGTGCAGTATTTAAGTGGAGGAGGGTAGAGGGCTGGGCTCATCATCCCCAAGTTTCAAAGTGCGTAAGGGTTGGCTCTAGACAGATTTTATGGGTCATTAAATATAATAAAGGGCAAACAGAAAAAGCTCAATAGTAGTTCTCTTTTGTTGGGTTTGTTAACTAGTACTCGAGCATGTATTGTAGCATGTGTATCTCTTGCAAATTAGTATTAATGTTTTAAAATGATATAAAATATTAAAGTATGTATGTGATGGAAATCATAGGAGAAAAATACAAGTGCGGATTGATGAATGATTAGCCTATTGGACTGATATTTATTGTCATCGCAAAGCGCTAACGCCATCGCCGAAATGGTTTCTTTGGGGAGAAAAAGGTTTCCTTTTGTACCTTCTTCTAATATCGTTGGACCATGATAGTGAGTGGATGAAGCAGAAATTACCATTTGCGTTGAATCCATGAATAAAAAAAAGTAAAATTACAAGGATAGCAAGTTAATAAGGAAGAGAAACAAATAAAATTAAGGCGGACTGGCTTGGGAGTCTCTTGTAATTGGCTCCGTTTGTCATTTGAACCCTCCTACTTACTACTTCCCAAATGAACTCCTAAACTCGACAGAACTCTACTTTGTAGACCCTTTTCTCATCCTCTCAGTGTGTGTATAATACAATTGCTTGCATGTCGAATTCCAAGTCATTTTATAATGAGACAGAAAAAGTTACATATTAAAAATTAAATAATATACAACAAAGTAATAATATTTTTTCTGATTGTACCTCCTTTTCCCATCCCCCCCAAAAAAAAAAATAAAATATCCAAACCACCTCCCACTCCTATCCATTTTTTTTTTGATGACAAGGAAAACCCGCAGCCGCTACCCTTTGGGTGCGCACAGGTAAAACCCCTGCTTCTATGCAATAGTTTGCAAACCACATTGGAGAGGATTCCTACTCCTACTCTTTCTCCAATCATTTTTACCCCCAAAAACTTACTCAAAATTCACCAGCCACTATCTTTATCGCAAGATGAACAATGATTAGATTTTTAGGTACGTGTGTTCTTATTTATAGAGCTAATGCAATTTATAGGAAAAACAATGGGTGTTGGAAAGAGATTTTGGGTGTTTTATGTTTGATATGAGTGTTTAGTAGTTGTTGAATGGTAGTTTTTCCTTTTTGTTGGAAATTTAAGTACATAGAAATGGTAAATGGGTCAGCCGGCAAAGATTGATTCTTAGTGTGATACCAATGGTTGCAAATTACACTCGAGGTTTTTAAGAAGAAGAAGAGTAGAAAATTTGGAAATTTCATAGTTTGAAAATGAGAGGAAACCCCTCTATTTAGAGACAACAAATAGTAGTATGAATAGTTGTTAATTGTGCTTTATTAGAAAAGTCAGAATCTTCAGTAACGTCACAATTCTTCAATATGAAAACGTGTCTATTTATAATATAATATAGATAAATATAAATTATAAAATATAGAGAATGCTTTTAAGGTAGTATAGATAGATTAATTTGACCATGTGATTTGCAGGTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGGGTGAGTTGTGTAATTAAAATACGCCAAATATGTGTTTAATGTCTGTTTGGGGCAGTTGTTATCATATGGTTTGAATAATCTACTTTCTCCTTTCTCTTCGTTTTGGTGTAACCTGCAGTCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTTCCAGTCCTGGCTTTCCAAGTCACTTTTGTATTATCATCTCTTGTCAGTTTATTACTCTC</genome_strand>
        <mrna_strand>GAGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGG......................................................................................................................TCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTTCCAGTCCTGGCTTTCCAAGTCACTTTTGTATTATCATCTCTTGTCAGTTTATTACTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700083" ref_strand="+" ref_description="SGN-E700083 [FA12AD01]">
      <seq>ccaccattacacatagcacaggaccttagctcggaaccctacctcaccgccttgttaccgccgtattggtggttacaatgtcgactccagctagaaagaggctgatgagggatttcaagaggttgcagcaggaccctcctgctggtattattggtgcacctcaagacaacaacattatgctttggaatgccgtgatatttggtcctgatgacactccttgggatggcggtgagttatccttgcatttggtcgttagtgcagtgtggcacaagaatgttaaacgcttaaagcgttgtagttggtgcacatctactgtttatgcattgttgtctgtacaattcaattatgctttaatcatctcagtctctcttttctgtgatttgaaattctgaataatcaatttggagagtcacacccctcgtcccctcctatgacattccttgcctacgaataagtagtgatgaatgttatgaatcatctcatagaggtgatgcatattctagttttggaaatgcttgaatcctttctttgatctcccagtccaagcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10613" stop="13878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10905" g_stop="10972" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10973" i_stop="12977" i_length="2005">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12978" g_stop="13111" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="202" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13112" i_stop="13229" i_length="118">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13230" g_stop="13578" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="551" r_length="349" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E700083" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10905" e_stop="10972"/>
          <exon e_start="12978" e_stop="13111"/>
          <exon e_start="13230" e_stop="13578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTGGTAAGTCCTTTGATTTTATATCTTCAATTTCCGATGGATCTTTGGAGTTCAAGGAAACTGGACAGGAAACTGATCTTTTGTTAAAAGCGAAAGCGGTTAAATTGGATAATTCTAATTTAGTTTGGAGAGTGTTTAAGAATTTTATGTGATTGTGCTTTTGCGACAATTAGCGAGAAGTTTTTGATCTTCAGTAAATAGTGTTATATTAGGGGAATTGTATGTGCGAGCCCTAATTCATGTGTGCTACAGTTGATTATTGTTATTTATTGTTCTGGAATTTGAGCTTTGTTACTTGATTGAGATGATCATAATTAGATCATGAGTTAAGCCAAATGAGAACTTGATTTATACCTGGATGACTGTGTTAAAGTGATATAAACAACTTTTACATACTTTTAATCCTGAAGTGGTGTTTAGAACTAAAATTTTTGACTTAGGTCATAAGTTTGAACCATGCACCAAGCGAATTAAAGTGCAGTATTTAAGTGGAGGAGGGTAGAGGGCTGGGCTCATCATCCCCAAGTTTCAAAGTGCGTAAGGGTTGGCTCTAGACAGATTTTATGGGTCATTAAATATAATAAAGGGCAAACAGAAAAAGCTCAATAGTAGTTCTCTTTTGTTGGGTTTGTTAACTAGTACTCGAGCATGTATTGTAGCATGTGTATCTCTTGCAAATTAGTATTAATGTTTTAAAATGATATAAAATATTAAAGTATGTATGTGATGGAAATCATAGGAGAAAAATACAAGTGCGGATTGATGAATGATTAGCCTATTGGACTGATATTTATTGTCATCGCAAAGCGCTAACGCCATCGCCGAAATGGTTTCTTTGGGGAGAAAAAGGTTTCCTTTTGTACCTTCTTCTAATATCGTTGGACCATGATAGTGAGTGGATGAAGCAGAAATTACCATTTGCGTTGAATCCATGAATAAAAAAAAGTAAAATTACAAGGATAGCAAGTTAATAAGGAAGAGAAACAAATAAAATTAAGGCGGACTGGCTTGGGAGTCTCTTGTAATTGGCTCCGTTTGTCATTTGAACCCTCCTACTTACTACTTCCCAAATGAACTCCTAAACTCGACAGAACTCTACTTTGTAGACCCTTTTCTCATCCTCTCAGTGTGTGTATAATACAATTGCTTGCATGTCGAATTCCAAGTCATTTTATAATGAGACAGAAAAAGTTACATATTAAAAATTAAATAATATACAACAAAGTAATAATATTTTTTCTGATTGTACCTCCTTTTCCCATCCCCCCCAAAAAAAAAAATAAAATATCCAAACCACCTCCCACTCCTATCCATTTTTTTTTTGATGACAAGGAAAACCCGCAGCCGCTACCCTTTGGGTGCGCACAGGTAAAACCCCTGCTTCTATGCAATAGTTTGCAAACCACATTGGAGAGGATTCCTACTCCTACTCTTTCTCCAATCATTTTTACCCCCAAAAACTTACTCAAAATTCACCAGCCACTATCTTTATCGCAAGATGAACAATGATTAGATTTTTAGGTACGTGTGTTCTTATTTATAGAGCTAATGCAATTTATAGGAAAAACAATGGGTGTTGGAAAGAGATTTTGGGTGTTTTATGTTTGATATGAGTGTTTAGTAGTTGTTGAATGGTAGTTTTTCCTTTTTGTTGGAAATTTAAGTACATAGAAATGGTAAATGGGTCAGCCGGCAAAGATTGATTCTTAGTGTGATACCAATGGTTGCAAATTACACTCGAGGTTTTTAAGAAGAAGAAGAGTAGAAAATTTGGAAATTTCATAGTTTGAAAATGAGAGGAAACCCCTCTATTTAGAGACAACAAATAGTAGTATGAATAGTTGTTAATTGTGCTTTATTAGAAAAGTCAGAATCTTCAGTAACGTCACAATTCTTCAATATGAAAACGTGTCTATTTATAATATAATATAGATAAATATAAATTATAAAATATAGAGAATGCTTTTAAGGTAGTATAGATAGATTAATTTGACCATGTGATTTGCAGGTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGGGTGAGTTGTGTAATTAAAATACGCCAAATATGTGTTTAATGTCTGTTTGGGGCAGTTGTTATCATATGGTTTGAATAATCTACTTTCTCCTTTCTCTTCGTTTTGGTGTAACCTGCAGTCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTT</genome_strand>
        <mrna_strand>CCACCATTACACATAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTATTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGG......................................................................................................................TCCTGATGACACTCCTTGGGATGGCGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCACAAGAATGTTAAACGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGCTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAATTTGGAGAGTCACACCCCTCGTCCCCTCCTATGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299007" ref_strand="+" ref_description="SGN-E299007 [cLET-42-J9]">
      <seq>agaacacaaagcacaggaccttagctcggaaccctacctcaccgccttgttaccgccgtattggtggttacaatgtcgactccagctagaaagaggctgatgagggatttcaagaggttgcagcaggaccctcctgctggtattagtggtgcacctcaagacaacaacattatgctttggaatgccgcgatatttggtcctgatgacactccttgggatggtggtacgttcaagttgactcttcaattctctgaggattaccccaacaagccaccaacagtgcggtttgtatctcgcatgtttcatcctaatatttatgcagatggaagcatatgtttggatattcttcagaatcaatggagtccaatttatgatgttgcggcaatacttacatccattcaagcattgctgtgtgatccaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10610" stop="14375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10910" g_stop="10972" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10973" i_stop="12977" i_length="2005">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12978" g_stop="13111" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="197" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13112" i_stop="13229" i_length="118">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13230" g_stop="13255" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="223" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13256" i_stop="13798" i_length="543">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13799" g_stop="13888" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="313" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13889" i_stop="13980" i_length="92">
            <donor d_prob="0.829" d_score="0.98"/>
            <acceptor a_prob="0.624" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13981" g_stop="14069" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="402" r_length="89" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E299007" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10910" e_stop="10972"/>
          <exon e_start="12978" e_stop="13111"/>
          <exon e_start="13230" e_stop="13255"/>
          <exon e_start="13799" e_stop="13888"/>
          <exon e_start="13981" e_stop="14069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTGGTAAGTCCTTTGATTTTATATCTTCAATTTCCGATGGATCTTTGGAGTTCAAGGAAACTGGACAGGAAACTGATCTTTTGTTAAAAGCGAAAGCGGTTAAATTGGATAATTCTAATTTAGTTTGGAGAGTGTTTAAGAATTTTATGTGATTGTGCTTTTGCGACAATTAGCGAGAAGTTTTTGATCTTCAGTAAATAGTGTTATATTAGGGGAATTGTATGTGCGAGCCCTAATTCATGTGTGCTACAGTTGATTATTGTTATTTATTGTTCTGGAATTTGAGCTTTGTTACTTGATTGAGATGATCATAATTAGATCATGAGTTAAGCCAAATGAGAACTTGATTTATACCTGGATGACTGTGTTAAAGTGATATAAACAACTTTTACATACTTTTAATCCTGAAGTGGTGTTTAGAACTAAAATTTTTGACTTAGGTCATAAGTTTGAACCATGCACCAAGCGAATTAAAGTGCAGTATTTAAGTGGAGGAGGGTAGAGGGCTGGGCTCATCATCCCCAAGTTTCAAAGTGCGTAAGGGTTGGCTCTAGACAGATTTTATGGGTCATTAAATATAATAAAGGGCAAACAGAAAAAGCTCAATAGTAGTTCTCTTTTGTTGGGTTTGTTAACTAGTACTCGAGCATGTATTGTAGCATGTGTATCTCTTGCAAATTAGTATTAATGTTTTAAAATGATATAAAATATTAAAGTATGTATGTGATGGAAATCATAGGAGAAAAATACAAGTGCGGATTGATGAATGATTAGCCTATTGGACTGATATTTATTGTCATCGCAAAGCGCTAACGCCATCGCCGAAATGGTTTCTTTGGGGAGAAAAAGGTTTCCTTTTGTACCTTCTTCTAATATCGTTGGACCATGATAGTGAGTGGATGAAGCAGAAATTACCATTTGCGTTGAATCCATGAATAAAAAAAAGTAAAATTACAAGGATAGCAAGTTAATAAGGAAGAGAAACAAATAAAATTAAGGCGGACTGGCTTGGGAGTCTCTTGTAATTGGCTCCGTTTGTCATTTGAACCCTCCTACTTACTACTTCCCAAATGAACTCCTAAACTCGACAGAACTCTACTTTGTAGACCCTTTTCTCATCCTCTCAGTGTGTGTATAATACAATTGCTTGCATGTCGAATTCCAAGTCATTTTATAATGAGACAGAAAAAGTTACATATTAAAAATTAAATAATATACAACAAAGTAATAATATTTTTTCTGATTGTACCTCCTTTTCCCATCCCCCCCAAAAAAAAAAATAAAATATCCAAACCACCTCCCACTCCTATCCATTTTTTTTTTGATGACAAGGAAAACCCGCAGCCGCTACCCTTTGGGTGCGCACAGGTAAAACCCCTGCTTCTATGCAATAGTTTGCAAACCACATTGGAGAGGATTCCTACTCCTACTCTTTCTCCAATCATTTTTACCCCCAAAAACTTACTCAAAATTCACCAGCCACTATCTTTATCGCAAGATGAACAATGATTAGATTTTTAGGTACGTGTGTTCTTATTTATAGAGCTAATGCAATTTATAGGAAAAACAATGGGTGTTGGAAAGAGATTTTGGGTGTTTTATGTTTGATATGAGTGTTTAGTAGTTGTTGAATGGTAGTTTTTCCTTTTTGTTGGAAATTTAAGTACATAGAAATGGTAAATGGGTCAGCCGGCAAAGATTGATTCTTAGTGTGATACCAATGGTTGCAAATTACACTCGAGGTTTTTAAGAAGAAGAAGAGTAGAAAATTTGGAAATTTCATAGTTTGAAAATGAGAGGAAACCCCTCTATTTAGAGACAACAAATAGTAGTATGAATAGTTGTTAATTGTGCTTTATTAGAAAAGTCAGAATCTTCAGTAACGTCACAATTCTTCAATATGAAAACGTGTCTATTTATAATATAATATAGATAAATATAAATTATAAAATATAGAGAATGCTTTTAAGGTAGTATAGATAGATTAATTTGACCATGTGATTTGCAGGTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGGGTGAGTTGTGTAATTAAAATACGCCAAATATGTGTTTAATGTCTGTTTGGGGCAGTTGTTATCATATGGTTTGAATAATCTACTTTCTCCTTTCTCTTCGTTTTGGTGTAACCTGCAGTCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTTCCAGTCCTGGCTTTCCAAGTCACTTTTGTATTATCATCTCTTGTCAGTTTATTACTCTCTGCCAAAAGTTAAGGTTGTTGGTGTTAGCAAGTGCGTCCTGTGGCTTTTGTTACCTTCGCCATCCTTTTCTTTTGACATAATATGATTTCTTTTTCATATCGCCTTAGTTTTGATATGAATTAATTAGTTCGGTTGTAACTATACTATTTGAGAACATCAGGTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATAGTAAGTTGGAGTTCAAGATTTGATTTTTATTTGTCAACAGTGGATAGGAATAGTAAATTTTATGTCTGGAATTGTTCTTCGTTTTTTTCCAGTTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTACATCCATTCAG</genome_strand>
        <mrna_strand>AGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGCGATATTTGG......................................................................................................................TCCTGATGACACTCCTTGGGATGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTATCTCGCATGTTTCATCCTAATA............................................................................................TTTATGCAGATGGAAGCATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTACATCCATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276618" ref_strand="+" ref_description="SGN-E276618 [cLEN-17-L24]">
      <seq>gaacacaaagcacaggaccttagctcggaaccctacctcaccgccttgttaccgccgtattggtggttacaatgtcgactccagctagaaagaggctgatgagggatttcaagaggttgcagcaggaccctcctgctggtattagtggtgcacctcaagacaacaacattatgctttggaatgccgtgatatttggtcctgatgacactccttgggatggtggtacgttcaagttgactcttcaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10611" stop="14124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10911" g_stop="10972" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10973" i_stop="12977" i_length="2005">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12978" g_stop="13111" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="196" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13112" i_stop="13229" i_length="118">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13230" g_stop="13255" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="222" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13256" i_stop="13798" i_length="543">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.872" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13799" g_stop="13824" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="248" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E276618" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10911" e_stop="10972"/>
          <exon e_start="12978" e_stop="13111"/>
          <exon e_start="13230" e_stop="13255"/>
          <exon e_start="13799" e_stop="13824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTGGTAAGTCCTTTGATTTTATATCTTCAATTTCCGATGGATCTTTGGAGTTCAAGGAAACTGGACAGGAAACTGATCTTTTGTTAAAAGCGAAAGCGGTTAAATTGGATAATTCTAATTTAGTTTGGAGAGTGTTTAAGAATTTTATGTGATTGTGCTTTTGCGACAATTAGCGAGAAGTTTTTGATCTTCAGTAAATAGTGTTATATTAGGGGAATTGTATGTGCGAGCCCTAATTCATGTGTGCTACAGTTGATTATTGTTATTTATTGTTCTGGAATTTGAGCTTTGTTACTTGATTGAGATGATCATAATTAGATCATGAGTTAAGCCAAATGAGAACTTGATTTATACCTGGATGACTGTGTTAAAGTGATATAAACAACTTTTACATACTTTTAATCCTGAAGTGGTGTTTAGAACTAAAATTTTTGACTTAGGTCATAAGTTTGAACCATGCACCAAGCGAATTAAAGTGCAGTATTTAAGTGGAGGAGGGTAGAGGGCTGGGCTCATCATCCCCAAGTTTCAAAGTGCGTAAGGGTTGGCTCTAGACAGATTTTATGGGTCATTAAATATAATAAAGGGCAAACAGAAAAAGCTCAATAGTAGTTCTCTTTTGTTGGGTTTGTTAACTAGTACTCGAGCATGTATTGTAGCATGTGTATCTCTTGCAAATTAGTATTAATGTTTTAAAATGATATAAAATATTAAAGTATGTATGTGATGGAAATCATAGGAGAAAAATACAAGTGCGGATTGATGAATGATTAGCCTATTGGACTGATATTTATTGTCATCGCAAAGCGCTAACGCCATCGCCGAAATGGTTTCTTTGGGGAGAAAAAGGTTTCCTTTTGTACCTTCTTCTAATATCGTTGGACCATGATAGTGAGTGGATGAAGCAGAAATTACCATTTGCGTTGAATCCATGAATAAAAAAAAGTAAAATTACAAGGATAGCAAGTTAATAAGGAAGAGAAACAAATAAAATTAAGGCGGACTGGCTTGGGAGTCTCTTGTAATTGGCTCCGTTTGTCATTTGAACCCTCCTACTTACTACTTCCCAAATGAACTCCTAAACTCGACAGAACTCTACTTTGTAGACCCTTTTCTCATCCTCTCAGTGTGTGTATAATACAATTGCTTGCATGTCGAATTCCAAGTCATTTTATAATGAGACAGAAAAAGTTACATATTAAAAATTAAATAATATACAACAAAGTAATAATATTTTTTCTGATTGTACCTCCTTTTCCCATCCCCCCCAAAAAAAAAAATAAAATATCCAAACCACCTCCCACTCCTATCCATTTTTTTTTTGATGACAAGGAAAACCCGCAGCCGCTACCCTTTGGGTGCGCACAGGTAAAACCCCTGCTTCTATGCAATAGTTTGCAAACCACATTGGAGAGGATTCCTACTCCTACTCTTTCTCCAATCATTTTTACCCCCAAAAACTTACTCAAAATTCACCAGCCACTATCTTTATCGCAAGATGAACAATGATTAGATTTTTAGGTACGTGTGTTCTTATTTATAGAGCTAATGCAATTTATAGGAAAAACAATGGGTGTTGGAAAGAGATTTTGGGTGTTTTATGTTTGATATGAGTGTTTAGTAGTTGTTGAATGGTAGTTTTTCCTTTTTGTTGGAAATTTAAGTACATAGAAATGGTAAATGGGTCAGCCGGCAAAGATTGATTCTTAGTGTGATACCAATGGTTGCAAATTACACTCGAGGTTTTTAAGAAGAAGAAGAGTAGAAAATTTGGAAATTTCATAGTTTGAAAATGAGAGGAAACCCCTCTATTTAGAGACAACAAATAGTAGTATGAATAGTTGTTAATTGTGCTTTATTAGAAAAGTCAGAATCTTCAGTAACGTCACAATTCTTCAATATGAAAACGTGTCTATTTATAATATAATATAGATAAATATAAATTATAAAATATAGAGAATGCTTTTAAGGTAGTATAGATAGATTAATTTGACCATGTGATTTGCAGGTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGGGTGAGTTGTGTAATTAAAATACGCCAAATATGTGTTTAATGTCTGTTTGGGGCAGTTGTTATCATATGGTTTGAATAATCTACTTTCTCCTTTCTCTTCGTTTTGGTGTAACCTGCAGTCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTTCCAGTCCTGGCTTTCCAAGTCACTTTTGTATTATCATCTCTTGTCAGTTTATTACTCTCTGCCAAAAGTTAAGGTTGTTGGTGTTAGCAAGTGCGTCCTGTGGCTTTTGTTACCTTCGCCATCCTTTTCTTTTGACATAATATGATTTCTTTTTCATATCGCCTTAGTTTTGATATGAATTAATTAGTTCGGTTGTAACTATACTATTTGAGAACATCAGGTACGTTCAAGTTGACTCTTCAATTC</genome_strand>
        <mrna_strand>GAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGG......................................................................................................................TCCTGATGACACTCCTTGGGATGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTTCAAGTTGACTCTTCAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291764" ref_strand="+" ref_description="SGN-E291764 [cLET-6-N8]">
      <seq>aacacaaagcacaggaccttagctcggaaccctacctcaccgccttgttaccgccgtattggtggttacaatgtcgactccagctagaaagaggctgatgagggatttcaagaggttgcagcaggaccctcctgctggtattagtggtgcacctcaagacaacaacattatgctttggaatgccgtgatatttggtcctgatgacactccttgggatggtggtacgttcaagttgactcttcaattctctgaggattaccccaacaagccaccaacagtgcggtttgtttctcgcatgtttcatcctaatatttatgcagatggaagtatatgtttggatattcttcaaaatcaatggagtccaatttatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10612" stop="14342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10912" g_stop="10972" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10973" i_stop="12977" i_length="2005">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12978" g_stop="13111" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="195" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13112" i_stop="13229" i_length="118">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13230" g_stop="13255" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="221" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13256" i_stop="13798" i_length="543">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13799" g_stop="13888" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="311" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13889" i_stop="13980" i_length="92">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="0.624" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13981" g_stop="14042" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="373" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E291764" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10912" e_stop="10972"/>
          <exon e_start="12978" e_stop="13111"/>
          <exon e_start="13230" e_stop="13255"/>
          <exon e_start="13799" e_stop="13888"/>
          <exon e_start="13981" e_stop="14042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTGGTAAGTCCTTTGATTTTATATCTTCAATTTCCGATGGATCTTTGGAGTTCAAGGAAACTGGACAGGAAACTGATCTTTTGTTAAAAGCGAAAGCGGTTAAATTGGATAATTCTAATTTAGTTTGGAGAGTGTTTAAGAATTTTATGTGATTGTGCTTTTGCGACAATTAGCGAGAAGTTTTTGATCTTCAGTAAATAGTGTTATATTAGGGGAATTGTATGTGCGAGCCCTAATTCATGTGTGCTACAGTTGATTATTGTTATTTATTGTTCTGGAATTTGAGCTTTGTTACTTGATTGAGATGATCATAATTAGATCATGAGTTAAGCCAAATGAGAACTTGATTTATACCTGGATGACTGTGTTAAAGTGATATAAACAACTTTTACATACTTTTAATCCTGAAGTGGTGTTTAGAACTAAAATTTTTGACTTAGGTCATAAGTTTGAACCATGCACCAAGCGAATTAAAGTGCAGTATTTAAGTGGAGGAGGGTAGAGGGCTGGGCTCATCATCCCCAAGTTTCAAAGTGCGTAAGGGTTGGCTCTAGACAGATTTTATGGGTCATTAAATATAATAAAGGGCAAACAGAAAAAGCTCAATAGTAGTTCTCTTTTGTTGGGTTTGTTAACTAGTACTCGAGCATGTATTGTAGCATGTGTATCTCTTGCAAATTAGTATTAATGTTTTAAAATGATATAAAATATTAAAGTATGTATGTGATGGAAATCATAGGAGAAAAATACAAGTGCGGATTGATGAATGATTAGCCTATTGGACTGATATTTATTGTCATCGCAAAGCGCTAACGCCATCGCCGAAATGGTTTCTTTGGGGAGAAAAAGGTTTCCTTTTGTACCTTCTTCTAATATCGTTGGACCATGATAGTGAGTGGATGAAGCAGAAATTACCATTTGCGTTGAATCCATGAATAAAAAAAAGTAAAATTACAAGGATAGCAAGTTAATAAGGAAGAGAAACAAATAAAATTAAGGCGGACTGGCTTGGGAGTCTCTTGTAATTGGCTCCGTTTGTCATTTGAACCCTCCTACTTACTACTTCCCAAATGAACTCCTAAACTCGACAGAACTCTACTTTGTAGACCCTTTTCTCATCCTCTCAGTGTGTGTATAATACAATTGCTTGCATGTCGAATTCCAAGTCATTTTATAATGAGACAGAAAAAGTTACATATTAAAAATTAAATAATATACAACAAAGTAATAATATTTTTTCTGATTGTACCTCCTTTTCCCATCCCCCCCAAAAAAAAAAATAAAATATCCAAACCACCTCCCACTCCTATCCATTTTTTTTTTGATGACAAGGAAAACCCGCAGCCGCTACCCTTTGGGTGCGCACAGGTAAAACCCCTGCTTCTATGCAATAGTTTGCAAACCACATTGGAGAGGATTCCTACTCCTACTCTTTCTCCAATCATTTTTACCCCCAAAAACTTACTCAAAATTCACCAGCCACTATCTTTATCGCAAGATGAACAATGATTAGATTTTTAGGTACGTGTGTTCTTATTTATAGAGCTAATGCAATTTATAGGAAAAACAATGGGTGTTGGAAAGAGATTTTGGGTGTTTTATGTTTGATATGAGTGTTTAGTAGTTGTTGAATGGTAGTTTTTCCTTTTTGTTGGAAATTTAAGTACATAGAAATGGTAAATGGGTCAGCCGGCAAAGATTGATTCTTAGTGTGATACCAATGGTTGCAAATTACACTCGAGGTTTTTAAGAAGAAGAAGAGTAGAAAATTTGGAAATTTCATAGTTTGAAAATGAGAGGAAACCCCTCTATTTAGAGACAACAAATAGTAGTATGAATAGTTGTTAATTGTGCTTTATTAGAAAAGTCAGAATCTTCAGTAACGTCACAATTCTTCAATATGAAAACGTGTCTATTTATAATATAATATAGATAAATATAAATTATAAAATATAGAGAATGCTTTTAAGGTAGTATAGATAGATTAATTTGACCATGTGATTTGCAGGTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGGGTGAGTTGTGTAATTAAAATACGCCAAATATGTGTTTAATGTCTGTTTGGGGCAGTTGTTATCATATGGTTTGAATAATCTACTTTCTCCTTTCTCTTCGTTTTGGTGTAACCTGCAGTCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTTCCAGTCCTGGCTTTCCAAGTCACTTTTGTATTATCATCTCTTGTCAGTTTATTACTCTCTGCCAAAAGTTAAGGTTGTTGGTGTTAGCAAGTGCGTCCTGTGGCTTTTGTTACCTTCGCCATCCTTTTCTTTTGACATAATATGATTTCTTTTTCATATCGCCTTAGTTTTGATATGAATTAATTAGTTCGGTTGTAACTATACTATTTGAGAACATCAGGTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATAGTAAGTTGGAGTTCAAGATTTGATTTTTATTTGTCAACAGTGGATAGGAATAGTAAATTTTATGTCTGGAATTGTTCTTCGTTTTTTTCCAGTTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGAT</genome_strand>
        <mrna_strand>AACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGG......................................................................................................................TCCTGATGACACTCCTTGGGATGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATA............................................................................................TTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAAAATCAATGGAGTCCAATTTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246107" ref_strand="+" ref_description="SGN-E246107 [cLEF-40-A20]">
      <seq>cacaaagcacaggaccttagctcggaaccctgcctcaccgccttgttaccgccgtattggtggttacaatgtcgactccagctagaaagaggctgatgagggatttcaagaggttgcagcaggaccctcctgctggtattagtggtgcacctcaagacaacaacattatgctttggaatgccgtgatatttggtcctgatgacactccttgggatggtggtacgttcaagttgactcttcaattctctgaggattaccccaacaagccaccaacagtgcggtttgtttctcgcatgtttcatcctaatatttatgcagatggaagtatatgtttggatattcttcagaatcaatggagtccaatttatgatgttgcggcaatacttacatccattcagtcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10614" stop="14373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10914" g_stop="10972" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10973" i_stop="12977" i_length="2005">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12978" g_stop="13111" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="193" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13112" i_stop="13229" i_length="118">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13230" g_stop="13255" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="219" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13256" i_stop="13798" i_length="543">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13799" g_stop="13888" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="309" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13889" i_stop="13980" i_length="92">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="0.624" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13981" g_stop="14069" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="398" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14070" i_stop="14331" i_length="262">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14332" g_stop="14336" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="403" r_length="5" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E246107" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10914" e_stop="10972"/>
          <exon e_start="12978" e_stop="13111"/>
          <exon e_start="13230" e_stop="13255"/>
          <exon e_start="13799" e_stop="13888"/>
          <exon e_start="13981" e_stop="14069"/>
          <exon e_start="14332" e_stop="14336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTGGTAAGTCCTTTGATTTTATATCTTCAATTTCCGATGGATCTTTGGAGTTCAAGGAAACTGGACAGGAAACTGATCTTTTGTTAAAAGCGAAAGCGGTTAAATTGGATAATTCTAATTTAGTTTGGAGAGTGTTTAAGAATTTTATGTGATTGTGCTTTTGCGACAATTAGCGAGAAGTTTTTGATCTTCAGTAAATAGTGTTATATTAGGGGAATTGTATGTGCGAGCCCTAATTCATGTGTGCTACAGTTGATTATTGTTATTTATTGTTCTGGAATTTGAGCTTTGTTACTTGATTGAGATGATCATAATTAGATCATGAGTTAAGCCAAATGAGAACTTGATTTATACCTGGATGACTGTGTTAAAGTGATATAAACAACTTTTACATACTTTTAATCCTGAAGTGGTGTTTAGAACTAAAATTTTTGACTTAGGTCATAAGTTTGAACCATGCACCAAGCGAATTAAAGTGCAGTATTTAAGTGGAGGAGGGTAGAGGGCTGGGCTCATCATCCCCAAGTTTCAAAGTGCGTAAGGGTTGGCTCTAGACAGATTTTATGGGTCATTAAATATAATAAAGGGCAAACAGAAAAAGCTCAATAGTAGTTCTCTTTTGTTGGGTTTGTTAACTAGTACTCGAGCATGTATTGTAGCATGTGTATCTCTTGCAAATTAGTATTAATGTTTTAAAATGATATAAAATATTAAAGTATGTATGTGATGGAAATCATAGGAGAAAAATACAAGTGCGGATTGATGAATGATTAGCCTATTGGACTGATATTTATTGTCATCGCAAAGCGCTAACGCCATCGCCGAAATGGTTTCTTTGGGGAGAAAAAGGTTTCCTTTTGTACCTTCTTCTAATATCGTTGGACCATGATAGTGAGTGGATGAAGCAGAAATTACCATTTGCGTTGAATCCATGAATAAAAAAAAGTAAAATTACAAGGATAGCAAGTTAATAAGGAAGAGAAACAAATAAAATTAAGGCGGACTGGCTTGGGAGTCTCTTGTAATTGGCTCCGTTTGTCATTTGAACCCTCCTACTTACTACTTCCCAAATGAACTCCTAAACTCGACAGAACTCTACTTTGTAGACCCTTTTCTCATCCTCTCAGTGTGTGTATAATACAATTGCTTGCATGTCGAATTCCAAGTCATTTTATAATGAGACAGAAAAAGTTACATATTAAAAATTAAATAATATACAACAAAGTAATAATATTTTTTCTGATTGTACCTCCTTTTCCCATCCCCCCCAAAAAAAAAAATAAAATATCCAAACCACCTCCCACTCCTATCCATTTTTTTTTTGATGACAAGGAAAACCCGCAGCCGCTACCCTTTGGGTGCGCACAGGTAAAACCCCTGCTTCTATGCAATAGTTTGCAAACCACATTGGAGAGGATTCCTACTCCTACTCTTTCTCCAATCATTTTTACCCCCAAAAACTTACTCAAAATTCACCAGCCACTATCTTTATCGCAAGATGAACAATGATTAGATTTTTAGGTACGTGTGTTCTTATTTATAGAGCTAATGCAATTTATAGGAAAAACAATGGGTGTTGGAAAGAGATTTTGGGTGTTTTATGTTTGATATGAGTGTTTAGTAGTTGTTGAATGGTAGTTTTTCCTTTTTGTTGGAAATTTAAGTACATAGAAATGGTAAATGGGTCAGCCGGCAAAGATTGATTCTTAGTGTGATACCAATGGTTGCAAATTACACTCGAGGTTTTTAAGAAGAAGAAGAGTAGAAAATTTGGAAATTTCATAGTTTGAAAATGAGAGGAAACCCCTCTATTTAGAGACAACAAATAGTAGTATGAATAGTTGTTAATTGTGCTTTATTAGAAAAGTCAGAATCTTCAGTAACGTCACAATTCTTCAATATGAAAACGTGTCTATTTATAATATAATATAGATAAATATAAATTATAAAATATAGAGAATGCTTTTAAGGTAGTATAGATAGATTAATTTGACCATGTGATTTGCAGGTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGGGTGAGTTGTGTAATTAAAATACGCCAAATATGTGTTTAATGTCTGTTTGGGGCAGTTGTTATCATATGGTTTGAATAATCTACTTTCTCCTTTCTCTTCGTTTTGGTGTAACCTGCAGTCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTTCCAGTCCTGGCTTTCCAAGTCACTTTTGTATTATCATCTCTTGTCAGTTTATTACTCTCTGCCAAAAGTTAAGGTTGTTGGTGTTAGCAAGTGCGTCCTGTGGCTTTTGTTACCTTCGCCATCCTTTTCTTTTGACATAATATGATTTCTTTTTCATATCGCCTTAGTTTTGATATGAATTAATTAGTTCGGTTGTAACTATACTATTTGAGAACATCAGGTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATAGTAAGTTGGAGTTCAAGATTTGATTTTTATTTGTCAACAGTGGATAGGAATAGTAAATTTTATGTCTGGAATTGTTCTTCGTTTTTTTCCAGTTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTACATCCATTCAGGTATAGAACTGTAATTGATTTTTAGACATCACATTCTCTAAGTTATCCATGTCTTAATCCTGAGTTTTACTATTAAATCTAATGGTTGAAAGCATCATTAAATGAAAATATGTGTTGCAAAGGAGTAGTTTCTTGTTCCTCATTCTATAGGGTTGGAGATATCATCCTTGTGACAGCTTGACTTATCGTTGTTTTAGTTTTAGGCTACGTAGTTACATTTGCATATTGTATTGTGCGTTTCTGTTTCTTTATGATGATGAAGCAATT</genome_strand>
        <mrna_strand>CACAAAGCACAGGACCTTAGCTCGGAACCCTGCCTCACCGCCTTGTTACCGCCGTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGG......................................................................................................................TCCTGATGACACTCCTTGGGATGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATA............................................................................................TTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTACATCCATTCAG......................................................................................................................................................................................................................................................................TCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206944" ref_strand="+" ref_description="SGN-E206944 [cLEC-33-M19]">
      <seq>gctcggaaccctacctcaccgccttgttaccgccgtattggtggttacaatgtcgactccagctagaaagaggctgatgagggatttcaagaggttgcagcaggaccctcctgctggtattagtggtgcacctcaagacaacaacattatgctttggaatgccgtgatatttggtcctgatgacactccttgggatggtggtacgttcaagttgactcttcaattctctgaggattaccccaacaagccaccaacagtgcggtttgtttctcgcatgtttcatcctaatatttatgcagatggaagtatatgtttggatattcttcagaatcaatggagtccaatttatgatgttgcggcaatacttacatccattcagtcattgctgtgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10633" stop="14375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10933" g_stop="10972" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10973" i_stop="12977" i_length="2005">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12978" g_stop="13111" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="174" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13112" i_stop="13229" i_length="118">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13230" g_stop="13255" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="200" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13256" i_stop="13798" i_length="543">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13799" g_stop="13888" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="290" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13889" i_stop="13980" i_length="92">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="0.624" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13981" g_stop="14069" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="379" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E206944" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10933" e_stop="10972"/>
          <exon e_start="12978" e_stop="13111"/>
          <exon e_start="13230" e_stop="13255"/>
          <exon e_start="13799" e_stop="13888"/>
          <exon e_start="13981" e_stop="14069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTGGTAAGTCCTTTGATTTTATATCTTCAATTTCCGATGGATCTTTGGAGTTCAAGGAAACTGGACAGGAAACTGATCTTTTGTTAAAAGCGAAAGCGGTTAAATTGGATAATTCTAATTTAGTTTGGAGAGTGTTTAAGAATTTTATGTGATTGTGCTTTTGCGACAATTAGCGAGAAGTTTTTGATCTTCAGTAAATAGTGTTATATTAGGGGAATTGTATGTGCGAGCCCTAATTCATGTGTGCTACAGTTGATTATTGTTATTTATTGTTCTGGAATTTGAGCTTTGTTACTTGATTGAGATGATCATAATTAGATCATGAGTTAAGCCAAATGAGAACTTGATTTATACCTGGATGACTGTGTTAAAGTGATATAAACAACTTTTACATACTTTTAATCCTGAAGTGGTGTTTAGAACTAAAATTTTTGACTTAGGTCATAAGTTTGAACCATGCACCAAGCGAATTAAAGTGCAGTATTTAAGTGGAGGAGGGTAGAGGGCTGGGCTCATCATCCCCAAGTTTCAAAGTGCGTAAGGGTTGGCTCTAGACAGATTTTATGGGTCATTAAATATAATAAAGGGCAAACAGAAAAAGCTCAATAGTAGTTCTCTTTTGTTGGGTTTGTTAACTAGTACTCGAGCATGTATTGTAGCATGTGTATCTCTTGCAAATTAGTATTAATGTTTTAAAATGATATAAAATATTAAAGTATGTATGTGATGGAAATCATAGGAGAAAAATACAAGTGCGGATTGATGAATGATTAGCCTATTGGACTGATATTTATTGTCATCGCAAAGCGCTAACGCCATCGCCGAAATGGTTTCTTTGGGGAGAAAAAGGTTTCCTTTTGTACCTTCTTCTAATATCGTTGGACCATGATAGTGAGTGGATGAAGCAGAAATTACCATTTGCGTTGAATCCATGAATAAAAAAAAGTAAAATTACAAGGATAGCAAGTTAATAAGGAAGAGAAACAAATAAAATTAAGGCGGACTGGCTTGGGAGTCTCTTGTAATTGGCTCCGTTTGTCATTTGAACCCTCCTACTTACTACTTCCCAAATGAACTCCTAAACTCGACAGAACTCTACTTTGTAGACCCTTTTCTCATCCTCTCAGTGTGTGTATAATACAATTGCTTGCATGTCGAATTCCAAGTCATTTTATAATGAGACAGAAAAAGTTACATATTAAAAATTAAATAATATACAACAAAGTAATAATATTTTTTCTGATTGTACCTCCTTTTCCCATCCCCCCCAAAAAAAAAAATAAAATATCCAAACCACCTCCCACTCCTATCCATTTTTTTTTTGATGACAAGGAAAACCCGCAGCCGCTACCCTTTGGGTGCGCACAGGTAAAACCCCTGCTTCTATGCAATAGTTTGCAAACCACATTGGAGAGGATTCCTACTCCTACTCTTTCTCCAATCATTTTTACCCCCAAAAACTTACTCAAAATTCACCAGCCACTATCTTTATCGCAAGATGAACAATGATTAGATTTTTAGGTACGTGTGTTCTTATTTATAGAGCTAATGCAATTTATAGGAAAAACAATGGGTGTTGGAAAGAGATTTTGGGTGTTTTATGTTTGATATGAGTGTTTAGTAGTTGTTGAATGGTAGTTTTTCCTTTTTGTTGGAAATTTAAGTACATAGAAATGGTAAATGGGTCAGCCGGCAAAGATTGATTCTTAGTGTGATACCAATGGTTGCAAATTACACTCGAGGTTTTTAAGAAGAAGAAGAGTAGAAAATTTGGAAATTTCATAGTTTGAAAATGAGAGGAAACCCCTCTATTTAGAGACAACAAATAGTAGTATGAATAGTTGTTAATTGTGCTTTATTAGAAAAGTCAGAATCTTCAGTAACGTCACAATTCTTCAATATGAAAACGTGTCTATTTATAATATAATATAGATAAATATAAATTATAAAATATAGAGAATGCTTTTAAGGTAGTATAGATAGATTAATTTGACCATGTGATTTGCAGGTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGGGTGAGTTGTGTAATTAAAATACGCCAAATATGTGTTTAATGTCTGTTTGGGGCAGTTGTTATCATATGGTTTGAATAATCTACTTTCTCCTTTCTCTTCGTTTTGGTGTAACCTGCAGTCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTTCCAGTCCTGGCTTTCCAAGTCACTTTTGTATTATCATCTCTTGTCAGTTTATTACTCTCTGCCAAAAGTTAAGGTTGTTGGTGTTAGCAAGTGCGTCCTGTGGCTTTTGTTACCTTCGCCATCCTTTTCTTTTGACATAATATGATTTCTTTTTCATATCGCCTTAGTTTTGATATGAATTAATTAGTTCGGTTGTAACTATACTATTTGAGAACATCAGGTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATAGTAAGTTGGAGTTCAAGATTTGATTTTTATTTGTCAACAGTGGATAGGAATAGTAAATTTTATGTCTGGAATTGTTCTTCGTTTTTTTCCAGTTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTACATCCATTCAG</genome_strand>
        <mrna_strand>GCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGG......................................................................................................................TCCTGATGACACTCCTTGGGATGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATA............................................................................................TTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTACATCCATTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250401" ref_strand="+" ref_description="SGN-E250401 [cLEG-6-D7]">
      <seq>ccctacctcaccgccttgttaccgccgtattggtggttacaatgtcgactccagctagaaagaggctgatgagggatttcaagaggttgcagcaggaccctcctgctggtattagtggtgcacctcaagacaacaacattatgctttggaatgccgtgatatttggtcctgatgacactccttgggatggtggtacgttcaagttgactcttcaattctctgaggattaccccaacaagccaccaacagtgcggtttgtttctcgcatgtttcatcctaatatttatgcagatggaagtatatgtttggatattcttcagaatcaatggagtccaatttatgatgttgcggcaatacttacatccattcagtcattgctgtgtgatccaaacccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10641" stop="14375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10941" g_stop="10972" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10973" i_stop="12977" i_length="2005">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12978" g_stop="13111" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="166" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13112" i_stop="13229" i_length="118">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13230" g_stop="13255" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="192" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13256" i_stop="13798" i_length="543">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13799" g_stop="13888" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="282" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13889" i_stop="13980" i_length="92">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="0.624" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13981" g_stop="14069" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="371" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E250401" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10941" e_stop="10972"/>
          <exon e_start="12978" e_stop="13111"/>
          <exon e_start="13230" e_stop="13255"/>
          <exon e_start="13799" e_stop="13888"/>
          <exon e_start="13981" e_stop="14069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTACCTCACCGCCTTGTTACCGCCGTATTGGTAAGTCCTTTGATTTTATATCTTCAATTTCCGATGGATCTTTGGAGTTCAAGGAAACTGGACAGGAAACTGATCTTTTGTTAAAAGCGAAAGCGGTTAAATTGGATAATTCTAATTTAGTTTGGAGAGTGTTTAAGAATTTTATGTGATTGTGCTTTTGCGACAATTAGCGAGAAGTTTTTGATCTTCAGTAAATAGTGTTATATTAGGGGAATTGTATGTGCGAGCCCTAATTCATGTGTGCTACAGTTGATTATTGTTATTTATTGTTCTGGAATTTGAGCTTTGTTACTTGATTGAGATGATCATAATTAGATCATGAGTTAAGCCAAATGAGAACTTGATTTATACCTGGATGACTGTGTTAAAGTGATATAAACAACTTTTACATACTTTTAATCCTGAAGTGGTGTTTAGAACTAAAATTTTTGACTTAGGTCATAAGTTTGAACCATGCACCAAGCGAATTAAAGTGCAGTATTTAAGTGGAGGAGGGTAGAGGGCTGGGCTCATCATCCCCAAGTTTCAAAGTGCGTAAGGGTTGGCTCTAGACAGATTTTATGGGTCATTAAATATAATAAAGGGCAAACAGAAAAAGCTCAATAGTAGTTCTCTTTTGTTGGGTTTGTTAACTAGTACTCGAGCATGTATTGTAGCATGTGTATCTCTTGCAAATTAGTATTAATGTTTTAAAATGATATAAAATATTAAAGTATGTATGTGATGGAAATCATAGGAGAAAAATACAAGTGCGGATTGATGAATGATTAGCCTATTGGACTGATATTTATTGTCATCGCAAAGCGCTAACGCCATCGCCGAAATGGTTTCTTTGGGGAGAAAAAGGTTTCCTTTTGTACCTTCTTCTAATATCGTTGGACCATGATAGTGAGTGGATGAAGCAGAAATTACCATTTGCGTTGAATCCATGAATAAAAAAAAGTAAAATTACAAGGATAGCAAGTTAATAAGGAAGAGAAACAAATAAAATTAAGGCGGACTGGCTTGGGAGTCTCTTGTAATTGGCTCCGTTTGTCATTTGAACCCTCCTACTTACTACTTCCCAAATGAACTCCTAAACTCGACAGAACTCTACTTTGTAGACCCTTTTCTCATCCTCTCAGTGTGTGTATAATACAATTGCTTGCATGTCGAATTCCAAGTCATTTTATAATGAGACAGAAAAAGTTACATATTAAAAATTAAATAATATACAACAAAGTAATAATATTTTTTCTGATTGTACCTCCTTTTCCCATCCCCCCCAAAAAAAAAAATAAAATATCCAAACCACCTCCCACTCCTATCCATTTTTTTTTTGATGACAAGGAAAACCCGCAGCCGCTACCCTTTGGGTGCGCACAGGTAAAACCCCTGCTTCTATGCAATAGTTTGCAAACCACATTGGAGAGGATTCCTACTCCTACTCTTTCTCCAATCATTTTTACCCCCAAAAACTTACTCAAAATTCACCAGCCACTATCTTTATCGCAAGATGAACAATGATTAGATTTTTAGGTACGTGTGTTCTTATTTATAGAGCTAATGCAATTTATAGGAAAAACAATGGGTGTTGGAAAGAGATTTTGGGTGTTTTATGTTTGATATGAGTGTTTAGTAGTTGTTGAATGGTAGTTTTTCCTTTTTGTTGGAAATTTAAGTACATAGAAATGGTAAATGGGTCAGCCGGCAAAGATTGATTCTTAGTGTGATACCAATGGTTGCAAATTACACTCGAGGTTTTTAAGAAGAAGAAGAGTAGAAAATTTGGAAATTTCATAGTTTGAAAATGAGAGGAAACCCCTCTATTTAGAGACAACAAATAGTAGTATGAATAGTTGTTAATTGTGCTTTATTAGAAAAGTCAGAATCTTCAGTAACGTCACAATTCTTCAATATGAAAACGTGTCTATTTATAATATAATATAGATAAATATAAATTATAAAATATAGAGAATGCTTTTAAGGTAGTATAGATAGATTAATTTGACCATGTGATTTGCAGGTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGGGTGAGTTGTGTAATTAAAATACGCCAAATATGTGTTTAATGTCTGTTTGGGGCAGTTGTTATCATATGGTTTGAATAATCTACTTTCTCCTTTCTCTTCGTTTTGGTGTAACCTGCAGTCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTTCCAGTCCTGGCTTTCCAAGTCACTTTTGTATTATCATCTCTTGTCAGTTTATTACTCTCTGCCAAAAGTTAAGGTTGTTGGTGTTAGCAAGTGCGTCCTGTGGCTTTTGTTACCTTCGCCATCCTTTTCTTTTGACATAATATGATTTCTTTTTCATATCGCCTTAGTTTTGATATGAATTAATTAGTTCGGTTGTAACTATACTATTTGAGAACATCAGGTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATAGTAAGTTGGAGTTCAAGATTTGATTTTTATTTGTCAACAGTGGATAGGAATAGTAAATTTTATGTCTGGAATTGTTCTTCGTTTTTTTCCAGTTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTACATCCATTCAG</genome_strand>
        <mrna_strand>CCCTACCTCACCGCCTTGTTACCGCCGTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGG......................................................................................................................TCCTGATGACACTCCTTGGGATGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATA............................................................................................TTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTACATCCATTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240735" ref_strand="+" ref_description="SGN-E240735 [cLED-24-I15]">
      <seq>ctcaccgccttgttaccgccgtattggtggttacaatgtcgactccagctagaaagaggctgatgagggatttcaagaggttgcagcaggaccctcctgctggtattagtggtgcacctcaagacaacaacattatgctttggaatgccgtgatatttggtcctgatgacactccttgggatggtggtacgttcaagttgactcttcaattctctgaggattaccccaacaagccaccaacagtgcggtttgtttctcgcatgtttcatcctaatatttatgcagatggaagtatatgtttggatattcttcagaatcaatggagtccaatttatgatgttgcggcaatacttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10647" stop="14360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10947" g_stop="10972" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10973" i_stop="12977" i_length="2005">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12978" g_stop="13111" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="160" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13112" i_stop="13229" i_length="118">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13230" g_stop="13255" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="186" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13256" i_stop="13798" i_length="543">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13799" g_stop="13888" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="276" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13889" i_stop="13980" i_length="92">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="0.624" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13981" g_stop="14060" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="356" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E240735" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10947" e_stop="10972"/>
          <exon e_start="12978" e_stop="13111"/>
          <exon e_start="13230" e_stop="13255"/>
          <exon e_start="13799" e_stop="13888"/>
          <exon e_start="13981" e_stop="14060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACCGCCTTGTTACCGCCGTATTGGTAAGTCCTTTGATTTTATATCTTCAATTTCCGATGGATCTTTGGAGTTCAAGGAAACTGGACAGGAAACTGATCTTTTGTTAAAAGCGAAAGCGGTTAAATTGGATAATTCTAATTTAGTTTGGAGAGTGTTTAAGAATTTTATGTGATTGTGCTTTTGCGACAATTAGCGAGAAGTTTTTGATCTTCAGTAAATAGTGTTATATTAGGGGAATTGTATGTGCGAGCCCTAATTCATGTGTGCTACAGTTGATTATTGTTATTTATTGTTCTGGAATTTGAGCTTTGTTACTTGATTGAGATGATCATAATTAGATCATGAGTTAAGCCAAATGAGAACTTGATTTATACCTGGATGACTGTGTTAAAGTGATATAAACAACTTTTACATACTTTTAATCCTGAAGTGGTGTTTAGAACTAAAATTTTTGACTTAGGTCATAAGTTTGAACCATGCACCAAGCGAATTAAAGTGCAGTATTTAAGTGGAGGAGGGTAGAGGGCTGGGCTCATCATCCCCAAGTTTCAAAGTGCGTAAGGGTTGGCTCTAGACAGATTTTATGGGTCATTAAATATAATAAAGGGCAAACAGAAAAAGCTCAATAGTAGTTCTCTTTTGTTGGGTTTGTTAACTAGTACTCGAGCATGTATTGTAGCATGTGTATCTCTTGCAAATTAGTATTAATGTTTTAAAATGATATAAAATATTAAAGTATGTATGTGATGGAAATCATAGGAGAAAAATACAAGTGCGGATTGATGAATGATTAGCCTATTGGACTGATATTTATTGTCATCGCAAAGCGCTAACGCCATCGCCGAAATGGTTTCTTTGGGGAGAAAAAGGTTTCCTTTTGTACCTTCTTCTAATATCGTTGGACCATGATAGTGAGTGGATGAAGCAGAAATTACCATTTGCGTTGAATCCATGAATAAAAAAAAGTAAAATTACAAGGATAGCAAGTTAATAAGGAAGAGAAACAAATAAAATTAAGGCGGACTGGCTTGGGAGTCTCTTGTAATTGGCTCCGTTTGTCATTTGAACCCTCCTACTTACTACTTCCCAAATGAACTCCTAAACTCGACAGAACTCTACTTTGTAGACCCTTTTCTCATCCTCTCAGTGTGTGTATAATACAATTGCTTGCATGTCGAATTCCAAGTCATTTTATAATGAGACAGAAAAAGTTACATATTAAAAATTAAATAATATACAACAAAGTAATAATATTTTTTCTGATTGTACCTCCTTTTCCCATCCCCCCCAAAAAAAAAAATAAAATATCCAAACCACCTCCCACTCCTATCCATTTTTTTTTTGATGACAAGGAAAACCCGCAGCCGCTACCCTTTGGGTGCGCACAGGTAAAACCCCTGCTTCTATGCAATAGTTTGCAAACCACATTGGAGAGGATTCCTACTCCTACTCTTTCTCCAATCATTTTTACCCCCAAAAACTTACTCAAAATTCACCAGCCACTATCTTTATCGCAAGATGAACAATGATTAGATTTTTAGGTACGTGTGTTCTTATTTATAGAGCTAATGCAATTTATAGGAAAAACAATGGGTGTTGGAAAGAGATTTTGGGTGTTTTATGTTTGATATGAGTGTTTAGTAGTTGTTGAATGGTAGTTTTTCCTTTTTGTTGGAAATTTAAGTACATAGAAATGGTAAATGGGTCAGCCGGCAAAGATTGATTCTTAGTGTGATACCAATGGTTGCAAATTACACTCGAGGTTTTTAAGAAGAAGAAGAGTAGAAAATTTGGAAATTTCATAGTTTGAAAATGAGAGGAAACCCCTCTATTTAGAGACAACAAATAGTAGTATGAATAGTTGTTAATTGTGCTTTATTAGAAAAGTCAGAATCTTCAGTAACGTCACAATTCTTCAATATGAAAACGTGTCTATTTATAATATAATATAGATAAATATAAATTATAAAATATAGAGAATGCTTTTAAGGTAGTATAGATAGATTAATTTGACCATGTGATTTGCAGGTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGGGTGAGTTGTGTAATTAAAATACGCCAAATATGTGTTTAATGTCTGTTTGGGGCAGTTGTTATCATATGGTTTGAATAATCTACTTTCTCCTTTCTCTTCGTTTTGGTGTAACCTGCAGTCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTTCCAGTCCTGGCTTTCCAAGTCACTTTTGTATTATCATCTCTTGTCAGTTTATTACTCTCTGCCAAAAGTTAAGGTTGTTGGTGTTAGCAAGTGCGTCCTGTGGCTTTTGTTACCTTCGCCATCCTTTTCTTTTGACATAATATGATTTCTTTTTCATATCGCCTTAGTTTTGATATGAATTAATTAGTTCGGTTGTAACTATACTATTTGAGAACATCAGGTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATAGTAAGTTGGAGTTCAAGATTTGATTTTTATTTGTCAACAGTGGATAGGAATAGTAAATTTTATGTCTGGAATTGTTCTTCGTTTTTTTCCAGTTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTACA</genome_strand>
        <mrna_strand>CTCACCGCCTTGTTACCGCCGTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGG......................................................................................................................TCCTGATGACACTCCTTGGGATGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATA............................................................................................TTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258214" ref_strand="+" ref_description="SGN-E258214 [cLEG-49-H21]">
      <seq>gtattggtggttacaatgtcgactccagctagaaagaggctgatgagggatttcaagaggttgcagcaggaccctcctgctggtattagtggtgcacctcaagacaacaacattatgctttggaatgccgtgatatttggtcctgatgacactccttgggatggtggtacgttcaagttgactcttcaattctctgaggattaccccaacaagccaccaacagtgcggtttgtttctcgcatgtttcatcctaatatttatgcagatggaagtatatgtttggatattcttcacaatccatggagtcccatttatgatggtgcggcaataattacatccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12677" stop="14366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12978" g_stop="13111" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="140" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13112" i_stop="13229" i_length="118">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13230" g_stop="13255" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="166" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13256" i_stop="13798" i_length="543">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13799" g_stop="13888" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="256" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13889" i_stop="13980" i_length="92">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="0.624" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13981" g_stop="14066" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="342" r_length="86" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E258214" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12978" e_stop="13111"/>
          <exon e_start="13230" e_stop="13255"/>
          <exon e_start="13799" e_stop="13888"/>
          <exon e_start="13981" e_stop="14066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGGGTGAGTTGTGTAATTAAAATACGCCAAATATGTGTTTAATGTCTGTTTGGGGCAGTTGTTATCATATGGTTTGAATAATCTACTTTCTCCTTTCTCTTCGTTTTGGTGTAACCTGCAGTCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTTCCAGTCCTGGCTTTCCAAGTCACTTTTGTATTATCATCTCTTGTCAGTTTATTACTCTCTGCCAAAAGTTAAGGTTGTTGGTGTTAGCAAGTGCGTCCTGTGGCTTTTGTTACCTTCGCCATCCTTTTCTTTTGACATAATATGATTTCTTTTTCATATCGCCTTAGTTTTGATATGAATTAATTAGTTCGGTTGTAACTATACTATTTGAGAACATCAGGTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATAGTAAGTTGGAGTTCAAGATTTGATTTTTATTTGTCAACAGTGGATAGGAATAGTAAATTTTATGTCTGGAATTGTTCTTCGTTTTTTTCCAGTTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTACATCCATT</genome_strand>
        <mrna_strand>GTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGG......................................................................................................................TCCTGATGACACTCCTTGGGATGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATA............................................................................................TTTATGCAGATGGAAGTATATGTTTGGATATTCTTCACAATCCATGGAGTCCCATTTATGATGGTGCGGCAATAATTACATCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295672" ref_strand="+" ref_description="SGN-E295672 [cLET-25-N19]">
      <seq>tacaatgtcgactccagctagaaagaggctgatgagggatttcaagaggttgcagcaggaccctcctgctggtattagtggtgcacctcaagacaacaacattatgctttggaatgccgtgatatttggtcctgatgacactccttgggatggtggtacgttcaagttgactcttcaattctctgaggattaccccaacaagccaccaacagtgcggtttggttctcgcatgtttcatcctaatatttatgcagatggaagtatatgtttggatattcttcagaatcaatggagtccaatttatgatgttgcggcaatacttacatccattcagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12683" stop="14369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12983" g_stop="13111" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13112" i_stop="13229" i_length="118">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13230" g_stop="13255" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="155" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13256" i_stop="13798" i_length="543">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13799" g_stop="13888" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="245" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13889" i_stop="13980" i_length="92">
            <donor d_prob="0.829" d_score="0.98"/>
            <acceptor a_prob="0.624" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13981" g_stop="14069" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="334" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E295672" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12983" e_stop="13111"/>
          <exon e_start="13230" e_stop="13255"/>
          <exon e_start="13799" e_stop="13888"/>
          <exon e_start="13981" e_stop="14069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGGGTGAGTTGTGTAATTAAAATACGCCAAATATGTGTTTAATGTCTGTTTGGGGCAGTTGTTATCATATGGTTTGAATAATCTACTTTCTCCTTTCTCTTCGTTTTGGTGTAACCTGCAGTCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTTCCAGTCCTGGCTTTCCAAGTCACTTTTGTATTATCATCTCTTGTCAGTTTATTACTCTCTGCCAAAAGTTAAGGTTGTTGGTGTTAGCAAGTGCGTCCTGTGGCTTTTGTTACCTTCGCCATCCTTTTCTTTTGACATAATATGATTTCTTTTTCATATCGCCTTAGTTTTGATATGAATTAATTAGTTCGGTTGTAACTATACTATTTGAGAACATCAGGTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATAGTAAGTTGGAGTTCAAGATTTGATTTTTATTTGTCAACAGTGGATAGGAATAGTAAATTTTATGTCTGGAATTGTTCTTCGTTTTTTTCCAGTTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTACATCCATTCAG</genome_strand>
        <mrna_strand>TACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGG......................................................................................................................TCCTGATGACACTCCTTGGGATGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGGTTCTCGCATGTTTCATCCTAATA............................................................................................TTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTACATCCATTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247284" ref_strand="+" ref_description="SGN-E247284 [cLEF-46-O19]">
      <seq>tttcaagaggttgcagcaggaccctcctgctggtattagtggtgcacctcaagacaacaacattatgctttggaatgccgtgatatttggtcctgatgacactccttgggatggtggtacgttcaagttgactcttcaattctctgaggattaccccaacaagccaccaacagtgcggtttgtttctcgcatgtttcatcctaatatttatgcagatggaagtatatgtttggatattcttcagaatcaatggagtccaatttatgatgttgcggcaatacttacatccattcagtcattgctgtgtgatccaaaccccaactcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12722" stop="14375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13022" g_stop="13111" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13112" i_stop="13229" i_length="118">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13230" g_stop="13255" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="116" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13256" i_stop="13798" i_length="543">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13799" g_stop="13888" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="206" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13889" i_stop="13980" i_length="92">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="0.624" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13981" g_stop="14069" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="295" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E247284" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13022" e_stop="13111"/>
          <exon e_start="13230" e_stop="13255"/>
          <exon e_start="13799" e_stop="13888"/>
          <exon e_start="13981" e_stop="14069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGGGTGAGTTGTGTAATTAAAATACGCCAAATATGTGTTTAATGTCTGTTTGGGGCAGTTGTTATCATATGGTTTGAATAATCTACTTTCTCCTTTCTCTTCGTTTTGGTGTAACCTGCAGTCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTTCCAGTCCTGGCTTTCCAAGTCACTTTTGTATTATCATCTCTTGTCAGTTTATTACTCTCTGCCAAAAGTTAAGGTTGTTGGTGTTAGCAAGTGCGTCCTGTGGCTTTTGTTACCTTCGCCATCCTTTTCTTTTGACATAATATGATTTCTTTTTCATATCGCCTTAGTTTTGATATGAATTAATTAGTTCGGTTGTAACTATACTATTTGAGAACATCAGGTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATAGTAAGTTGGAGTTCAAGATTTGATTTTTATTTGTCAACAGTGGATAGGAATAGTAAATTTTATGTCTGGAATTGTTCTTCGTTTTTTTCCAGTTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTACATCCATTCAG</genome_strand>
        <mrna_strand>TTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGG......................................................................................................................TCCTGATGACACTCCTTGGGATGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATA............................................................................................TTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTACATCCATTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344525" ref_strand="+" ref_description="SGN-E344525 [cTOF-14-F18]">
      <seq>aagcgttgtagttggtgcacatctactgtttatgcattgttgtctgtacaattcaattatgttttaatcatctcagtctctcttttctgtgatttgaaattctgaataatcagtttggagagtcgcacccctcgtcccctcccaggacattccttgcctacgaataagtagtgatgaatgttatgaatcatctcatagaggtgatgcatattctagttttggaaatgcttgaatcctttctttgatctcccagtccaagcatttccagtcctggctttccaagtcacttttgtattatcatctcttgtcagtttattactctctgccaaaagttaaggttgttggtgttagcaagtgcgtcctgtggcttttgttaccttcgccatccttttcttttgacataatatgatttctttttcatatcgccttagttttgatatgaattaattagttcggttgtaactatactatttgagaacatcaggtacgttcaagttgactcttcaattctctgaggattaccccaacaagccaccaacagtgcggtttgtttctcgcatgtttcatcctaatatttatgcagatggaagtatatgtttggatattcttcagaatcaatggagtccaatttatgatgttgcggcaatacttacatccattcangtatagaactgtaattgatttttagacatcacattctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13015" stop="14409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13315" g_stop="13888" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13889" i_stop="13980" i_length="92">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="0.624" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13981" g_stop="14109" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="703" r_length="129" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E344525" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13315" e_stop="13888"/>
          <exon e_start="13981" e_stop="14109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTTCCAGTCCTGGCTTTCCAAGTCACTTTTGTATTATCATCTCTTGTCAGTTTATTACTCTCTGCCAAAAGTTAAGGTTGTTGGTGTTAGCAAGTGCGTCCTGTGGCTTTTGTTACCTTCGCCATCCTTTTCTTTTGACATAATATGATTTCTTTTTCATATCGCCTTAGTTTTGATATGAATTAATTAGTTCGGTTGTAACTATACTATTTGAGAACATCAGGTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATAGTAAGTTGGAGTTCAAGATTTGATTTTTATTTGTCAACAGTGGATAGGAATAGTAAATTTTATGTCTGGAATTGTTCTTCGTTTTTTTCCAGTTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTACATCCATTCAGGTATAGAACTGTAATTGATTTTTAGACATCACATTCTCTA</genome_strand>
        <mrna_strand>AAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTTCCAGTCCTGGCTTTCCAAGTCACTTTTGTATTATCATCTCTTGTCAGTTTATTACTCTCTGCCAAAAGTTAAGGTTGTTGGTGTTAGCAAGTGCGTCCTGTGGCTTTTGTTACCTTCGCCATCCTTTTCTTTTGACATAATATGATTTCTTTTTCATATCGCCTTAGTTTTGATATGAATTAATTAGTTCGGTTGTAACTATACTATTTGAGAACATCAGGTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATA............................................................................................TTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTACATCCATTCANGTATAGAACTGTAATTGATTTTTAGACATCACATTCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308266" ref_strand="+" ref_description="SGN-E308266 [cLEZ-6-K13]">
      <seq>tagcaattagtgtgttttctcttcagcaatggcagcagaaaacgtagcccaatcaaccttcccactccaagatcgtgtggccattgttaccggttcttctcgcggaatcggcaaagcaattgcacttcatttggcctcacttggtgctaaactcgtcatcaactattcctccaactccactcaagctgacgacgtcgtatcccagatcaattccacctccggttacccacgtgccattgcggtcaaggccaatatctcagatccagatcaagtgaaatccctctttgacgctgctgaatcggcttttcaatcgccggtcaacatcctggtaaactccgccggggtactcgacggaaaatacccgtcaatcctaaacacaaccctagaggatttcgacaggacttttgatgtgaacgctcgtggagctttcgtatgctgcaaggaaggtgctaagagaatcaaacacggtggaggagggaggattatatgcttatcgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17767" stop="18865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18067" g_stop="18565" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E308266" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18067" e_stop="18565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAATTAGTGTGTTTTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACG</genome_strand>
        <mrna_strand>TAGCAATTAGTGTGTTTTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310038" ref_strand="+" ref_description="SGN-E310038 [cLEZ-8-I13]">
      <seq>tagcaattagtgtgttttctcttcagcaatggcagcagaaaacgtagcccaatcaaccttcccactccaagatcgtgtggccattgttaccggttcttctcgcggaatcggcaaagcaattgcacttcatttggcctcacttggtgctaaactcgtcatcaactattcctccaactccactcaagctgacgacgtcgtatcccagatcaattccacctccggttacccacgtgccattgcggtcaaggccaatatctcagatccagatcaagtgaaatccctctttgacgctgctgaatcggcttttcaatcgccggtcaacatcctggtaaactccgccggggtactcgacggaaaatacccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17767" stop="18731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18067" g_stop="18431" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E310038" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18067" e_stop="18431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAATTAGTGTGTTTTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGT</genome_strand>
        <mrna_strand>TAGCAATTAGTGTGTTTTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310993" ref_strand="+" ref_description="SGN-E310993 [cLEZ-17-I5]">
      <seq>gcaattagtgtgttttctcttcagcaatggcagcagaaaacgtagcccaatcaaccttcccactccaagatcgtgtggccattgttaccggttcttctcgcggaatcggcaaagcaattgcacttcatttggcctcacttggtgctaaactcgtcatcaactattgctgcaactccactcaagctgacgacgtcgtatcccagatcaattccacctccggttacccacgtgccattgcggtcaaggccaatatctgagatccagatcaagtgaaatccctctttgacgctgctgaatcggcttttcaatcgccggtcaacatcctggtaaactccgccggggtactcgacggaaaatacccgtcaatcctaaacacaaccctagaggatttcgacaggacttttgatgtgaacgctcgtggagctttcgtatgctgcaaggaaggtgcttatagaatcaaacacggtggaggagggaggattatatgcttatcgacgtccttagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17769" stop="18873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18069" g_stop="18573" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E310993" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18069" e_stop="18573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTAGTGTGTTTTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACGTCCTTAGC</genome_strand>
        <mrna_strand>GCAATTAGTGTGTTTTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTGCTGCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTGAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTTATAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACGTCCTTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208591" ref_strand="+" ref_description="SGN-E208591 [cLEC-39-N8]">
      <seq>aattagtgtgttttctcttcagcaatggcagcagaaaacgtatcccaatcaaccttcccactccaagatcgtgtggccattgttaccggttcttctcgcggaatcggcaaagcaattgcacttcatttggcctcacttggtgctaaactcgtcatcaactattcctccaactccactcaagctgacgacgtcgtatcccagatcaattccacctccggttacccacgtgccattgcggtcaaggccaatatctcagatccagatcaagtgaaatccctctttgacgctgctgaatcggcttttcaatcgccggtcaacatcctggtaaactccgccggggtactcgacggaaaatacccgtcaatcctaaacacaaccctagaggatttcgacaggacttttgatgtgaacgctcgtggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17771" stop="18792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18071" g_stop="18492" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E208591" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18071" e_stop="18492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAGTGTGTTTTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGC</genome_strand>
        <mrna_strand>AATTAGTGTGTTTTCTCTTCAGCAATGGCAGCAGAAAACGTATCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201289" ref_strand="+" ref_description="SGN-E201289 [cLEC-10-P17]">
      <seq>tgttttctcttcagcaatggcagcagagaacgtggcccaatcaaccttcccactccaagatcgtgtggccattgttaccggttcttctcgcggaatcggcaaagcaattgcacttcatttggcctcacttggtgctaaactcgtcatcaactattcctccaactccactcaagctgacgacgtcgtatcccagatcaattccacctccggttacccacgtgccattgcggtcaaggccaatatctcagatccagatcaagtgaaatccctctttgacgctgctgaatcggcttttcaatcgccggtcaacatcctggtaaactccgccggggtactcgacggaaaatacccgtcaatcctaaacaccaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17779" stop="18749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18079" g_stop="18449" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E201289" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18079" e_stop="18449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACA-CAACCC</genome_strand>
        <mrna_strand>TGTTTTCTCTTCAGCAATGGCAGCAGAGAACGTGGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACCAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200725" ref_strand="+" ref_description="SGN-E200725 [cLEC-9-E7]">
      <seq>gttttctcttcagcaatggcagcagaaaacgtagcccaatcaaccttcccactccaagatcgtgtggccattgttaccggttcttctcgcggaatcggcaaagcaattgcacttcatttggcctcacttggtgctaaactcgtcatcaactattcctccaactccactcaagctgacgacgtcgtatcccagatcaattccacctccggttacccacgtgccattgcggtcaaggccaatatctcacatccagatcaagtgaaatccctctttgacgctgctgaatcggctatgcaatcgccggtcaacatgctggtaaactccgccggggtactcgacggaaaatacccgtcaatcctaaacacaaccctagaggatttcgacaggacttttgatgtgaacgctcgtggagctttcgtatgctgcaaggaatgtgctaagagaatcaaacacggtggaggatggaggattatatgcttatcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17780" stop="18863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18080" g_stop="18563" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E200725" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18080" e_stop="18563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGA</genome_strand>
        <mrna_strand>GTTTTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCACATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTATGCAATCGCCGGTCAACATGCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAATGTGCTAAGAGAATCAAACACGGTGGAGGATGGAGGATTATATGCTTATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266190" ref_strand="+" ref_description="SGN-E266190 [cLEI-3-I19]">
      <seq>ttctcttcagcaatggcagcagaaaacgtagcccagtcaaccttcccactccaagatcgtgtggccattgttaccggttcttctcgcggaatcggcaaagcaattgcacttcatttggcctcacttggtgctaaactcgtcatcaactattcctccaactccactcaagctgacgacgtcgtatcccagatcaattccacctccggttacccacgtgccattgcggtcaaggccaatatctcagatccagatcaagtgaaatccctctttgacgctgctgaatcggcttttcaatcgccggtcaacatcctggtaaactccgccggggtactcgacggaaaatacccgtcaatcctaaacacaaccctagaggatttcgacaggacttttgatgtgaacgctcgtggagctttcgtatgctgcaaggaaggtgctaagagaatcaaacacggtggaggagggaggattatatgcttatcgacgtccttagcagcggcgtttagacctggatacggagcgtaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17783" stop="18905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18083" g_stop="18605" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E266190" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18083" e_stop="18605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACGTCCTTAGCAGCGGCGTTTAGACCTGGATACGGAGCGTACA</genome_strand>
        <mrna_strand>TTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAGTCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACGTCCTTAGCAGCGGCGTTTAGACCTGGATACGGAGCGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266422" ref_strand="+" ref_description="SGN-E266422 [cLEI-3-L11]">
      <seq>ttctcttcagcaatggcagcagaaaacgtagcccaatcaaccttcccactccaagatcgtgtggccattgttaccggttcttctcgcggaatcggcaaagcaattgcacttcatttggcctcacttggtgctaaactcgtcatcaactattcctccaactccactcaagctgacgacgtcgtatcccagatcaattccacctccggttacccacgtgccattgcggtcaaggccaatatctcagatccagatcaagtgaaatccctctttgacgctgctgaatcggcttttcaatcgccggtcaacatcctggtaaactccgccggggtactcgacggaaaatacccgtcaatcctaaacacaaccctagaggatttcgacaggacttttgatgtgaacgctcgtggagctttcgtatgctgcaaggaaggtgctaagagaatcaaacacggtggaggagggaggattatatgcttatcgacgtccttagcagcggcgtttagacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17783" stop="18889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18083" g_stop="18589" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E266422" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18083" e_stop="18589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACGTCCTTAGCAGCGGCGTTTAGACCT</genome_strand>
        <mrna_strand>TTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACGTCCTTAGCAGCGGCGTTTAGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268149" ref_strand="+" ref_description="SGN-E268149 [cLEI-15-K8]">
      <seq>tctcttcagcaatggcagcagaaaacgtagcccaatcaaccttcccactccaagatcgtgtggccattgttaccggttcttctcgcggaatcggcaaagcaattgcacttcatttggcctcacttggtgctaaactcgtcatcaactattcctccaactccactcaagctgacgacgtcgtatcccagatcaattccacctccggttacccacgtgccattgcggtcaaggccaatatctcagatccagatcaagtgaaatccctctttgacgctgctgaatcggcttttcaatcgccggtcaacatcctggtaaactccgccggggtactcgacggaaaatacccgtcaatcctaaacacaaccctagaggatttcgacaggacttttgatgtgaacgctcgtggagctttcgtatgctgcaaggaaggtgctaagagaatcaaacacggtggaggagggaggattatatgcttatcgacgtccttagcagcggcgtttagacctggatacggagcgtacatcgcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17784" stop="18912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18084" g_stop="18612" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E268149" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18084" e_stop="18612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACGTCCTTAGCAGCGGCGTTTAGACCTGGATACGGAGCGTACATCGCTTC</genome_strand>
        <mrna_strand>TCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACGTCCTTAGCAGCGGCGTTTAGACCTGGATACGGAGCGTACATCGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268147" ref_strand="+" ref_description="SGN-E268147 [cLEI-15-K4]">
      <seq>aatcaaccttcccactccaagatcgtgtggccattgttaccggttcttctcgcggaatcagcaaagcaattgcacttcatttggcctcacttggtgctaaactcgtcatcaactattcctccaactccactcaagctgacgacgtcgtataccagatcaattccacctccggttacccacgtgccattgcggtcaaggccaatatctcagatccagatcaagtgaaatccctctttgacgctgctgaatcggcttttcaatcgccggtcaacatcctggtaaactccgccggggtactctacggaaaatacccgtcaatcctaaacacaaccctagaggatttcgacaggacttttgatgtgaacgctcgtggagctttcgtatgctgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17817" stop="18807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18117" g_stop="18507" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E268147" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18117" e_stop="18507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAA</genome_strand>
        <mrna_strand>AATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCAGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATACCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCTACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329119" ref_strand="+" ref_description="SGN-E329119 [cTOC-24-L14]">
      <seq>ggttcttctcgcggaatcggcaaagcaattgcacttcatttggcctcacttggtgctaaactcgtcatcaactattcctccaactccactcaagctgacgacgtcgtatcccagatcaattccacctccggttacccacgtgccattgcggtcaaggccaatatctcagatccagatcaagtgaaatccctctttgacgctgctgaatcggcttttcaatcgccggtcaacatcctggtaaactccgccggggtactcgacggaaaatacccgtcaatcctaaacacaaccctagaggatttcgacaggacttttgatgtgaacgctcgtggagctttcgtatgctgcaaggaaggtgctaagagaatcaaacacggtggaggagggaggattatatgcttatcgacgtccttagcagcggcgtttagacctggatacggagcgtacatcgcttcaaaagcggccgtggaagcaatggtgaagatactggcgaaggaactgaaagggacaggaataacggtgaattgtgtggcgccgggacccatagcgacggaattgttctacgaagggaaaacagaggccatgataaagagggtgattgatgattgtccacatggaagacttggcctgccggaggatatcgcgccggtggttgggtttttggccggcgacacttctgaatggggttatggacagatcattcgtgtcaatggcggcttcatctaatttaattatttatttattttgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17858" stop="19207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18158" g_stop="18907" g_length="750"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="750" r_length="750" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E329119" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18158" e_stop="18907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACGTCCTTAGCAGCGGCGTTTAGACCTGGATACGGAGCGTACATCGCTTCAAAAGCGGCCGTGGAAGCAATGGTGAAGATACTGGCGAAGGAACTGAAAGGGACAGGAATAACGGTGAATTGTGTGGCGCCGGGACCCATAGCGACGGAATTGTTCTACGAAGGGAAAACAGAGGCCATGATAAAGAGGGTGATTGATGATTGTCCACATGGAAGACTTGGCCTGCCGGAGGATATCGCGCCGGTGGTTGGGTTTTTGGCCGGCGACACTTCTGAATGGGTTAATGGACAGATCATTCGTGTCAATGGCGGCTTCATCTAATTTATTTATTTATTTATTTTGCCA</genome_strand>
        <mrna_strand>GGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACGTCCTTAGCAGCGGCGTTTAGACCTGGATACGGAGCGTACATCGCTTCAAAAGCGGCCGTGGAAGCAATGGTGAAGATACTGGCGAAGGAACTGAAAGGGACAGGAATAACGGTGAATTGTGTGGCGCCGGGACCCATAGCGACGGAATTGTTCTACGAAGGGAAAACAGAGGCCATGATAAAGAGGGTGATTGATGATTGTCCACATGGAAGACTTGGCCTGCCGGAGGATATCGCGCCGGTGGTTGGGTTTTTGGCCGGCGACACTTCTGAATGGGGTTATGGACAGATCATTCGTGTCAATGGCGGCTTCATCTAATTTAATTATTTATTTATTTTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325725" ref_strand="+" ref_description="SGN-E325725 [cTOC-15-L1]">
      <seq>ggttcttctcgcggaatcggcaaagcaattgcacttcatttggcctcacttggtgctaaactcgtcatcaactattcctccaactccactcaagctgacgacgtcgtatcccagatcaattccacctccggttacccacgtgccattgcggtcaaggccaatatctcagatccagatcaagtgaaatccctctttgacgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17858" stop="18658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18158" g_stop="18358" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E325725" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>201</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18158" e_stop="18358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCT</genome_strand>
        <mrna_strand>GGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311729" ref_strand="+" ref_description="SGN-E311729 [cLEZ-9-G13]">
      <seq>tcagatccagatcaagtgaaatccctctttgacgctgctgaatcggcttttcaatcgccggtcaacatcctggtaaactccgccggggtactcgacggaaaatacccgtcaatcctaaacacaaccctagaggatttcgacaggacttttgatgtgaacgctcgtggagcttacgtatgctgcaaggaaggtgctaagagaatcaaacacggtggaggagggaggattatatgcttatcgacgtccttagcagcggcgtttagacctggatacggagcgtacatcgcttcaaaagcggccgcggaagcaatggtgaagatactggcgaaggaactgaaagggacaggaataaccgtgaattgtgtggcgccgggacccatagcgacagaattgttctacgaagggaaaacagaggccatgataaagagggtgattgatgattgtccacatggaagacttggcctgccggaggatatcgcgccggtggttgggtttttggccggcgacacttctgaatgggttaatggacagatcattcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18023" stop="19163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18323" g_stop="18863" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E311729" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18323" e_stop="18863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACGTCCTTAGCAGCGGCGTTTAGACCTGGATACGGAGCGTACATCGCTTCAAAAGCGGCCGTGGAAGCAATGGTGAAGATACTGGCGAAGGAACTGAAAGGGACAGGAATAACGGTGAATTGTGTGGCGCCGGGACCCATAGCGACGGAATTGTTCTACGAAGGGAAAACAGAGGCCATGATAAAGAGGGTGATTGATGATTGTCCACATGGAAGACTTGGCCTGCCGGAGGATATCGCGCCGGTGGTTGGGTTTTTGGCCGGCGACACTTCTGAATGGGTTAATGGACAGATCATTCGTG</genome_strand>
        <mrna_strand>TCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTACGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACGTCCTTAGCAGCGGCGTTTAGACCTGGATACGGAGCGTACATCGCTTCAAAAGCGGCCGCGGAAGCAATGGTGAAGATACTGGCGAAGGAACTGAAAGGGACAGGAATAACCGTGAATTGTGTGGCGCCGGGACCCATAGCGACAGAATTGTTCTACGAAGGGAAAACAGAGGCCATGATAAAGAGGGTGATTGATGATTGTCCACATGGAAGACTTGGCCTGCCGGAGGATATCGCGCCGGTGGTTGGGTTTTTGGCCGGCGACACTTCTGAATGGGTTAATGGACAGATCATTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336228" ref_strand="+" ref_description="SGN-E336228 [cTOE-10-L1]">
      <seq>aagtgtcgccggccaaaaacccaaccaccggcgcgatatcctccggcaggccaagtcttccatgtggacaatcatcaatcaccctctttatcatggcctctgttttcccttcgtagaacaattccgtcgctatgggtcccggcgccacacaattcaccgttattcctgtccctttcagttccttcgccagtatcttcaccattgcttccacggccgcttttgaagcgatgtacgctccgtatccaggtctaaacgccgctgctaaggacgtcgataagcatataatcctccctcctccaccgtgtttgattctcttagcaccttccttgcagcatacgaaagctccacgagcgttcacatcaaaagtcctgtcgaaatcctctagggttgtgtttaggattgacgggtattttccgtcgagtaccccggcggagtttaccaggatgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19133" stop="18084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18833" g_stop="18384" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E336228" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18833" e_stop="18384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGTCGCCGGCCAAAAACCCAACCACCGGCGCGATATCCTCCGGCAGGCCAAGTCTTCCATGTGGACAATCATCAATCACCCTCTTTATCATGGCCTCTGTTTTCCCTTCGTAGAACAATTCCGTCGCTATGGGTCCCGGCGCCACACAATTCACCGTTATTCCTGTCCCTTTCAGTTCCTTCGCCAGTATCTTCACCATTGCTTCCACGGCCGCTTTTGAAGCGATGTACGCTCCGTATCCAGGTCTAAACGCCGCTGCTAAGGACGTCGATAAGCATATAATCCTCCCTCCTCCACCGTGTTTGATTCTCTTAGCACCTTCCTTGCAGCATACGAAAGCTCCACGAGCGTTCACATCAAAAGTCCTGTCGAAATCCTCTAGGGTTGTGTTTAGGATTGACGGGTATTTTCCGTCGAGTACCCCGGCGGAGTTTACCAGGATGTTGA</genome_strand>
        <mrna_strand>AAGTGTCGCCGGCCAAAAACCCAACCACCGGCGCGATATCCTCCGGCAGGCCAAGTCTTCCATGTGGACAATCATCAATCACCCTCTTTATCATGGCCTCTGTTTTCCCTTCGTAGAACAATTCCGTCGCTATGGGTCCCGGCGCCACACAATTCACCGTTATTCCTGTCCCTTTCAGTTCCTTCGCCAGTATCTTCACCATTGCTTCCACGGCCGCTTTTGAAGCGATGTACGCTCCGTATCCAGGTCTAAACGCCGCTGCTAAGGACGTCGATAAGCATATAATCCTCCCTCCTCCACCGTGTTTGATTCTCTTAGCACCTTCCTTGCAGCATACGAAAGCTCCACGAGCGTTCACATCAAAAGTCCTGTCGAAATCCTCTAGGGTTGTGTTTAGGATTGACGGGTATTTTCCGTCGAGTACCCCGGCGGAGTTTACCAGGATGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372805" ref_strand="+" ref_description="SGN-E372805 [TUS-32-B18]">
      <seq>cacttttcgtttgtttatccacaaaattccattttctagcaatttcagtgcttttcttcagtgatcatggcaggaaacaaacgtagcccaaggccaaagcctcgggaatcgtgtagccattgttaccggctcttctcgcggaatcggcaaagcaattgctcttcacttggcctctctcggagctaaactcgtcatcaactacacttccaactctactcaagctgacgacgtcgtatcccaaatcaattccacctccgattccccacgcgcaatcgccgtcaaagccaatgtctccgatccaaatcaagtcaaatccctcttcgacgctgcagaatcagcctttcaatcgccggtcaacatcctcgtcaattgcgccggcgtactcgacgggaaatacccgtcgatcctaaacacaaccctagaggatttcgacaggactttcgatgtgaacgtgcgtggagctttcatatgctgcaaagaaggcgctaatagaatcaagcgcggaggaggcggaaggattatatgcttaacgtcgtcgatggcggtggcgttgaggcccggattcggggcgtacgcggcgtcaaaggcggccgtggaagcaatggtgaaaatactggcgaaagaactgaaagggacagggataacggtgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21132" stop="22382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21432" g_stop="22082" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="652" r_length="652" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E372805" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21432" e_stop="22082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTTCGTTTGTTTATCCACAAAATTCCATTTTCTAGCAATTTCAGTGCTTTTCTTCAGTGATCATGGC-GGAAACAAACGTAGCCCAAGGCCAAAGCCTCGGGAATCGTGTAGCCATTGTTACCGGCTCTTCTCGCGGAATCGGCAAAGCAATTGCTCTTCACTTGGCCTCTCTCGGAGCTAAACTCGTCATCAACTACACTTCCAACTCTACTCAAGCTGACGACGTCGTATCCCAAATCAATTCCACCTCCGATTCCCCACGCGCAATCGCCGTCAAAGCCAATGTCTCCGATCCAAATCAAGTCAAATCCCTCTTCGACGCTGCAGAATCAGCCTTTCAATCGCCGGTCAACATCCTCGTCAATTGCGCCGGCGTACTCGACGGGAAATACCCGTCGATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTCGATGTGAACGTGCGTGGAGCTTTCATATGCTGCAAAGAAGGCGCTAATAGAATCAAGCGCGGAGGAGGCGGAAGGATTATATGCTTAACGTCGTCGATGGCGGTGGCGTTGAGGCCCGGATTCGGGGCGTACGCGGCGTCAAAGGCGGCCGTGGAAGCAATGGTGAAAATACTGGCGAAAGAACTGAAAGGGACAGGGATAACGGTGAAT</genome_strand>
        <mrna_strand>CACTTTTCGTTTGTTTATCCACAAAATTCCATTTTCTAGCAATTTCAGTGCTTTTCTTCAGTGATCATGGCAGGAAACAAACGTAGCCCAAGGCCAAAGCCTCGGGAATCGTGTAGCCATTGTTACCGGCTCTTCTCGCGGAATCGGCAAAGCAATTGCTCTTCACTTGGCCTCTCTCGGAGCTAAACTCGTCATCAACTACACTTCCAACTCTACTCAAGCTGACGACGTCGTATCCCAAATCAATTCCACCTCCGATTCCCCACGCGCAATCGCCGTCAAAGCCAATGTCTCCGATCCAAATCAAGTCAAATCCCTCTTCGACGCTGCAGAATCAGCCTTTCAATCGCCGGTCAACATCCTCGTCAATTGCGCCGGCGTACTCGACGGGAAATACCCGTCGATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTCGATGTGAACGTGCGTGGAGCTTTCATATGCTGCAAAGAAGGCGCTAATAGAATCAAGCGCGGAGGAGGCGGAAGGATTATATGCTTAACGTCGTCGATGGCGGTGGCGTTGAGGCCCGGATTCGGGGCGTACGCGGCGTCAAAGGCGGCCGTGGAAGCAATGGTGAAAATACTGGCGAAAGAACTGAAAGGGACAGGGATAACGGTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292414" ref_strand="+" ref_description="SGN-E292414 [cLET-1-N9]">
      <seq>cacttttcgtttgtttatccacaaaattccattttctagcaatttcagtgcttttcttcagtgatcatggcggaaacaaacgtagcccaaggccaaagcctcgggaatcgtgtagccattgttaccggctcttctcgcggaatcggcaaagcaattgctcttcacttggcctctctcggagctaaactcgtcatcaactacacttccaactctactcaagctgacgacgtcgtatcccaaatcaattccacctccgattccccacgcgcaatcgccgtcaaagccaatgtctccgatccaaatcaagtcaaatccctcttcgacgctgcagaatcagcctttcaatcgccggtcaacatcctcgtcaattgcgccggcgtactcgacgggaaatacccgtcgatcctaaacacaaccctagaggatttcgacaggactttcgatgtgaacgtgcgtggagctttcatatgctgcaaagaaggcgctaatagaatcaagcgcggaggaggcggaaggattatatgcttaacgtcgtcgatggcggtggcgttgaggcccggattcggggcgtacgcggcgtcaaaggcggccgtggaagcaatggtgaaaatactggcgaaagaactgaaagggacagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21132" stop="22369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21432" g_stop="22069" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E292414" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21432" e_stop="22069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTTCGTTTGTTTATCCACAAAATTCCATTTTCTAGCAATTTCAGTGCTTTTCTTCAGTGATCATGGCGGAAACAAACGTAGCCCAAGGCCAAAGCCTCGGGAATCGTGTAGCCATTGTTACCGGCTCTTCTCGCGGAATCGGCAAAGCAATTGCTCTTCACTTGGCCTCTCTCGGAGCTAAACTCGTCATCAACTACACTTCCAACTCTACTCAAGCTGACGACGTCGTATCCCAAATCAATTCCACCTCCGATTCCCCACGCGCAATCGCCGTCAAAGCCAATGTCTCCGATCCAAATCAAGTCAAATCCCTCTTCGACGCTGCAGAATCAGCCTTTCAATCGCCGGTCAACATCCTCGTCAATTGCGCCGGCGTACTCGACGGGAAATACCCGTCGATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTCGATGTGAACGTGCGTGGAGCTTTCATATGCTGCAAAGAAGGCGCTAATAGAATCAAGCGCGGAGGAGGCGGAAGGATTATATGCTTAACGTCGTCGATGGCGGTGGCGTTGAGGCCCGGATTCGGGGCGTACGCGGCGTCAAAGGCGGCCGTGGAAGCAATGGTGAAAATACTGGCGAAAGAACTGAAAGGGACAGG</genome_strand>
        <mrna_strand>CACTTTTCGTTTGTTTATCCACAAAATTCCATTTTCTAGCAATTTCAGTGCTTTTCTTCAGTGATCATGGCGGAAACAAACGTAGCCCAAGGCCAAAGCCTCGGGAATCGTGTAGCCATTGTTACCGGCTCTTCTCGCGGAATCGGCAAAGCAATTGCTCTTCACTTGGCCTCTCTCGGAGCTAAACTCGTCATCAACTACACTTCCAACTCTACTCAAGCTGACGACGTCGTATCCCAAATCAATTCCACCTCCGATTCCCCACGCGCAATCGCCGTCAAAGCCAATGTCTCCGATCCAAATCAAGTCAAATCCCTCTTCGACGCTGCAGAATCAGCCTTTCAATCGCCGGTCAACATCCTCGTCAATTGCGCCGGCGTACTCGACGGGAAATACCCGTCGATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTCGATGTGAACGTGCGTGGAGCTTTCATATGCTGCAAAGAAGGCGCTAATAGAATCAAGCGCGGAGGAGGCGGAAGGATTATATGCTTAACGTCGTCGATGGCGGTGGCGTTGAGGCCCGGATTCGGGGCGTACGCGGCGTCAAAGGCGGCCGTGGAAGCAATGGTGAAAATACTGGCGAAAGAACTGAAAGGGACAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732033" ref_strand="+" ref_description="SGN-E732033 [LB01AD07]">
      <seq>gtatcccaaggccaaagcctcgggaatcgtgtagccattgttaccggctcttctcgcggaatcggcaaagcaattgctcttcacttggcctctctcggagctaaactcgtcatcaactacacttccaactctactcaagctgacgacgtcgtatcccaaatcaattccacctccgattccccacgcgcaatcgccgtcaaagccaatgtctccgatccaaatcaagtcaaatccctcttcgacgctgcagaatcagcctttcaatcgccggtcaacatcctcgtcaattgcgccggcgtactcgacgggaaatacccgtcgatcctaaacacaaccctagaggatttcgacaggactttcgatgtgaacgtgcgtggagctttcatatgctgcaaagaaggcgctaatagaatcaagcgcggaggaggcggaaggattatatgcttaacgtcgtcgatggcggtggcgttgaggcccggattcggggcgtacgcggcgtcaaaggcggccgtggaagcaatggtgaaaatactggcgaaagaactgaaagggacagggataacggtgaattgtgcggcgccgggacccattgcaacggatatgttttacgaagggaaaacggaggagatgattaagaaggcgattgatgagtgtccacatggaaggcttggactgccggaggatgtggcgccggtggttgggtttttagccggcgatgcttctgaatggggtaatggacagattattcgtgtcaatggcggttatatttgatactagtatatgttcgttttatttcgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21213" stop="22613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21513" g_stop="22313" g_length="801"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="801" r_length="801" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E732033" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21513" e_stop="22313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCCCAAGGCCAAAGCCTCGGGAATCGTGTAGCCATTGTTACCGGCTCTTCTCGCGGAATCGGCAAAGCAATTGCTCTTCACTTGGCCTCTCTCGGAGCTAAACTCGTCATCAACTACACTTCCAACTCTACTCAAGCTGACGACGTCGTATCCCAAATCAATTCCACCTCCGATTCCCCACGCGCAATCGCCGTCAAAGCCAATGTCTCCGATCCAAATCAAGTCAAATCCCTCTTCGACGCTGCAGAATCAGCCTTTCAATCGCCGGTCAACATCCTCGTCAATTGCGCCGGCGTACTCGACGGGAAATACCCGTCGATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTCGATGTGAACGTGCGTGGAGCTTTCATATGCTGCAAAGAAGGCGCTAATAGAATCAAGCGCGGAGGAGGCGGAAGGATTATATGCTTAACGTCGTCGATGGCGGTGGCGTTGAGGCCCGGATTCGGGGCGTACGCGGCGTCAAAGGCGGCCGTGGAAGCAATGGTGAAAATACTGGCGAAAGAACTGAAAGGGACAGGGATAACGGTGAATTGTGCGGCGCCGGGACCCATTGCAACGGATATGTTTTACGAAGGGAAAACGGAGGAGATGATTAAGAAGGCGATTGATGAGTGTCCACATGGAAGGCTTGGACTGCCGGAGGATGTGGCGCCGGTGGTTGGGTTTTTAGCCGGCGATGCTTCTGAATGGGTTAATGGACAGATTATTCGTGTCAATGGCGGTTATATTTGATACTAGTATATGTTCGTTTTATTTCGTTTT</genome_strand>
        <mrna_strand>GTATCCCAAGGCCAAAGCCTCGGGAATCGTGTAGCCATTGTTACCGGCTCTTCTCGCGGAATCGGCAAAGCAATTGCTCTTCACTTGGCCTCTCTCGGAGCTAAACTCGTCATCAACTACACTTCCAACTCTACTCAAGCTGACGACGTCGTATCCCAAATCAATTCCACCTCCGATTCCCCACGCGCAATCGCCGTCAAAGCCAATGTCTCCGATCCAAATCAAGTCAAATCCCTCTTCGACGCTGCAGAATCAGCCTTTCAATCGCCGGTCAACATCCTCGTCAATTGCGCCGGCGTACTCGACGGGAAATACCCGTCGATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTCGATGTGAACGTGCGTGGAGCTTTCATATGCTGCAAAGAAGGCGCTAATAGAATCAAGCGCGGAGGAGGCGGAAGGATTATATGCTTAACGTCGTCGATGGCGGTGGCGTTGAGGCCCGGATTCGGGGCGTACGCGGCGTCAAAGGCGGCCGTGGAAGCAATGGTGAAAATACTGGCGAAAGAACTGAAAGGGACAGGGATAACGGTGAATTGTGCGGCGCCGGGACCCATTGCAACGGATATGTTTTACGAAGGGAAAACGGAGGAGATGATTAAGAAGGCGATTGATGAGTGTCCACATGGAAGGCTTGGACTGCCGGAGGATGTGGCGCCGGTGGTTGGGTTTTTAGCCGGCGATGCTTCTGAATGGGGTAATGGACAGATTATTCGTGTCAATGGCGGTTATATTTGATACTAGTATATGTTCGTTTTATTTCGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372804" ref_strand="+" ref_description="SGN-E372804 [TUS-32-B18](-)">
      <seq>ccgatccaaatcaagtcaaatccctcttcgacgctgcagaatcagcctttcaatcgccggtcaacatcctcgtcaattgcgccggcgtactcgacgggaaatacccgtcgatcctaaacacaaccctagaggatttcgacaggactttcgatgtgaacgtgcgtggagctttcatatgctgcaaagaaggcgctaatagaatcaagcgcggaggaggcggaaggattatatgcttaacgtcgtcgatggcggtggcgttgaggcccggattcggggcgtacgcggcgtcaaaggcggccgtggaagcaatggtgaaaatactggcgaaagaactgaaagggacagggataacggtgaattgtgcggcgccgggacccattgcaacggatatgttttacgaagggaaaacggaggagatgattaagaaggcgattgatgagtgtccacatggaaggcttggactgccggaggatgtggcgccggtggttgggtttttagccggcgatgcttttgaatgggttaatggacagattattcgtgtcaatggcggttatatttgatactagtatatgttcgttttatttcgttttttatttggcatttcctttgaaatattgttataatcaatatttttaacctgaaataaggtaaaaatttaataatacaattcaatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21424" stop="22701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21724" g_stop="22409" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="686" r_length="686" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E372804" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21724" e_stop="22409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATCCAAATCAAGTCAAATCCCTCTTCGACGCTGCAGAATCAGCCTTTCAATCGCCGGTCAACATCCTCGTCAATTGCGCCGGCGTACTCGACGGGAAATACCCGTCGATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTCGATGTGAACGTGCGTGGAGCTTTCATATGCTGCAAAGAAGGCGCTAATAGAATCAAGCGCGGAGGAGGCGGAAGGATTATATGCTTAACGTCGTCGATGGCGGTGGCGTTGAGGCCCGGATTCGGGGCGTACGCGGCGTCAAAGGCGGCCGTGGAAGCAATGGTGAAAATACTGGCGAAAGAACTGAAAGGGACAGGGATAACGGTGAATTGTGCGGCGCCGGGACCCATTGCAACGGATATGTTTTACGAAGGGAAAACGGAGGAGATGATTAAGAAGGCGATTGATGAGTGTCCACATGGAAGGCTTGGACTGCCGGAGGATGTGGCGCCGGTGGTTGGGTTTTTAGCCGGCGATGCTTCTGAATGGGTTAATGGACAGATTATTCGTGTCAATGGCGGTTATATTTGATACTAGTATATGTTCGTTTTATTTCGTTTTTTATTTGGCATTTCCTTTGAAATATTGTTATAATCAATATTTTTAACCTGAAATAAGGTAAAAATTAAATAATACAGTTCAATTTGAAGTCTAAAT</genome_strand>
        <mrna_strand>CCGATCCAAATCAAGTCAAATCCCTCTTCGACGCTGCAGAATCAGCCTTTCAATCGCCGGTCAACATCCTCGTCAATTGCGCCGGCGTACTCGACGGGAAATACCCGTCGATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTCGATGTGAACGTGCGTGGAGCTTTCATATGCTGCAAAGAAGGCGCTAATAGAATCAAGCGCGGAGGAGGCGGAAGGATTATATGCTTAACGTCGTCGATGGCGGTGGCGTTGAGGCCCGGATTCGGGGCGTACGCGGCGTCAAAGGCGGCCGTGGAAGCAATGGTGAAAATACTGGCGAAAGAACTGAAAGGGACAGGGATAACGGTGAATTGTGCGGCGCCGGGACCCATTGCAACGGATATGTTTTACGAAGGGAAAACGGAGGAGATGATTAAGAAGGCGATTGATGAGTGTCCACATGGAAGGCTTGGACTGCCGGAGGATGTGGCGCCGGTGGTTGGGTTTTTAGCCGGCGATGCTTTTGAATGGGTTAATGGACAGATTATTCGTGTCAATGGCGGTTATATTTGATACTAGTATATGTTCGTTTTATTTCGTTTTTTATTTGGCATTTCCTTTGAAATATTGTTATAATCAATATTTTTAACCTGAAATAAGGTAAAAATTTAATAATACAATTCAATTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E693835" ref_strand="+" ref_description="SGN-E693835 [LH_Ea02F17](-)">
      <seq>attgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcgatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctttggagcgacaagttcatagtagtaacatcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaaatcttggttcatctttcctgctttcatgtcttgactacattatatatgttacaattgaccaagaatgaatattaagctataacagcattcattatctatattctcaagagtttttatttcatggtttagcagcatctgatttttgtactgcttcaatcggattcattgattaaagaagtttggctttttgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29108" stop="27346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28888" g_stop="28877" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28876" i_stop="28797" i_length="80">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28796" g_stop="28614" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="195" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28613" i_stop="28530" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28529" g_stop="28351" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="374" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28350" i_stop="28092" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28091" g_stop="27645" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="821" r_length="447" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="822" polyA_stop="837"/>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E693835" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28888" e_stop="28877"/>
          <exon e_start="28796" e_stop="28614"/>
          <exon e_start="28529" e_stop="28351"/>
          <exon e_start="28091" e_stop="27645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGAGTTTTTATTTCATGGTTTAGCAGCATCTGGTTTTTGTACTGCTTCTCTC-TATTCATTGATTAAAGAAGTTTGGCTTTTTT</genome_strand>
        <mrna_strand>ATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCGATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTTTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAAATCTTGGTTCATC-TTTCCTGCTTTCATGTCTTGACTACATTATATATGTTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGAGTTTTTATTTCATGGTTTAGCAGCATCTGATTTTTGTACTGCTTCAATCGGATTCATTGATTAAAGAAGTTTGGCTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735341" ref_strand="+" ref_description="SGN-E735341 [LC01AE06]">
      <seq>cgagccctttttagttcccgcttgatatcatcaagttcttaatcacatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccacgaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacatcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaattcttggttcatcttttcctgctttcatgtcttgactacattatatatattacaattgaccaagaatgaatattaagctataacagcattcattatctatattctcaagagtttttatttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28997" stop="27413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28707" g_stop="28614" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28613" i_stop="28530" i_length="84">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28529" g_stop="28351" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="271" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28350" i_stop="28092" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28091" g_stop="27709" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="654" r_length="383" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E735341" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28707" e_stop="28614"/>
          <exon e_start="28529" e_stop="28351"/>
          <exon e_start="28091" e_stop="27709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGAGTTTTTATTTCATGGT</genome_strand>
        <mrna_strand>CGA-GCCCT-TTTTAGTTCCCGCTTGATATCATCAAGTTCTTAATCACATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCACGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGAGTTTTTATTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739148" ref_strand="+" ref_description="SGN-E739148 [LC16BB12]">
      <seq>gctattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacatcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaattcttggttcatcttttcctgctttcatgtcttgactacattatatatattacaattgaccaagaatgaatattaagctataacagcattcattatctatattctcaagagtttttatttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28999" stop="27413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28701" g_stop="28614" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28613" i_stop="28530" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28529" g_stop="28351" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="267" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28350" i_stop="28092" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28091" g_stop="27709" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="650" r_length="383" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E739148" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28701" e_stop="28614"/>
          <exon e_start="28529" e_stop="28351"/>
          <exon e_start="28091" e_stop="27709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGAGTTTTTATTTCATGGT</genome_strand>
        <mrna_strand>GCTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGAGTTTTTATTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740975" ref_strand="+" ref_description="SGN-E740975 [LC23CH03]">
      <seq>gtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacatcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaattcttggttcatcttttcctgctttcatgtcttgactacattatatatattacaattgaccaagaatgaatattaagctataacagcattcattatctatattctcaagagtttttatttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29000" stop="27413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28700" g_stop="28614" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28613" i_stop="28530" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28529" g_stop="28351" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="266" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28350" i_stop="28092" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28091" g_stop="27709" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="649" r_length="383" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E740975" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28700" e_stop="28614"/>
          <exon e_start="28529" e_stop="28351"/>
          <exon e_start="28091" e_stop="27709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGAGTTTTTATTTCATGGT</genome_strand>
        <mrna_strand>GTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGAGTTTTTATTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747169" ref_strand="+" ref_description="SGN-E747169 [GI|9789538]">
      <seq>actctgttttggatttggtgggcgatttaccaatcttatttctggacccgagaaaaatcctatctttctttggaagagaggaaattgagcaagatgggggagaaacctgaggtgttagatgctgtattaaaggagactgtggatttggagaatatacccattgaagaagtttttgaaaatttgagatgtaccaaagagggtcttactggtacagctgcccaagaaaggttggcaatttttgggtacaacaaactagaggagaagaaggagagcaaattcttgaaatttctggggtttatgtggaaccccctctcatgggttatggaagctgctgctattatggcaattgctcttgcaaatggaggaggaaagcctccggattggcaagattttgtgggtattattaccttgctagtgattaactcaacaattagttttattgaggagaataatgctggcaatgcagcagctgctctcatggctcgtctcgctcctaaagccaaggttcttcgagatggaaaatggaatgaagaagatgctgctgttcttgttcctggggacattatcagtattaaactgggagatattattcctgcagatgctcgtcttcttgaaggtgatcccctgaaaattgaccagtctgctttgactggtgaatctcttcctgtaactaaaggtcctggagatggtgtctactctggttctacctgtaagcagggagagatagaagctgtcgtcatcgccactggggttcataccttttttgggaaggctgcacaccttgttgacagtacaaatcaagtgggacacttccaaaaggttttgactgctattggaaacttctgcatctgttctattgcagtggggatgataatagagatcattgtgatgtaccctatccaacaccgcaaatatcgccctgggattgacaatcttcttgtccttctcattggtggaattccaattgccatgccaacggttctttcagtcacgatggcaattggatctcatcggctcgctcaacagggtgctattacgaaaagaatgacagctattgaggagatggctggtatggacgtgctttgtagtgacaagacagggacccttacactaaacaagcttactgttgacaaaaaccttgttgaggtttttgccaaaggtgttgacgcagatactgtcgttctgatggcagctcgagcgtctcgtacagagaaccaggatgccattgacactgctattgttgggatgttgtctgacccgaaggaggctcgtgctggcattcgtgaaatacactttcttcctttcaatccaactgacaagcgtacagcgcttacttatcttgatggtgaaggaaaaatgcacagggtcagcaaaggggcaccagagcagatcctaaatcttgcacacaacaagtcagacatagaacgtagagttcatgcggtgattgataagtttgctgagaggggtttgcgctcacttggtgtggcctaccaggaagttccagagggaaggaaggagagttccggaggaccatggcaattcattggtctcctgcctttgtttgatcctccaagacacgacagtgctgagactataaggagggctttgaatcttggagtgaatgttaaaatgatcacaggggatcaactggctataggaaaagaaacagggcgtcgtctgggaatgggaaccaacatgtatccttcatctgctctgttggggcagactaaggatgaatcaattgcttctttaccaattgatgaactgatagaaaaggctgatggttttgctggagtattccctgagcacaaatatgagattgtaaaacgcttgcaagctaggaagcatatctgtggaatgactggagatggagtcaatgacgctcctgctttaaagaaggctgatattgggatagctgttgatgatgccactgatgctgctcgtagtgcttctgacattgttcttactgaacctggtctcagtgtcatcattagtgctgttctgactagtcgagcaatctttcaaaggatgaaaaactatacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggcccttatctggaagtttgactttccacctttcatggtgcttatcattgcaatcctcaatgacggtaccattatgacaatatcaaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacagtcattttcttttgggcagcatatgagacagatttcttcccgcgtgtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcacaagatctcgaagttggtcgtttgttgagcgtcctggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacatcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaattcttggttcatcttttcctgctttcatgtcttgactacattatatatattacaattgaccaagaatgaatattaagctataacagcattcattatctatattctcaagagtttttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35328" stop="27415"/>
      </template>
    </gDNA_segment>
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        </intron>
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        </intron>
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      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E747169" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>3244</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
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      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747169" rDNA_strand="+"/>
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      </PGS_line>
      <alignment>
        <genome_strand>ACTCTGTTTTGGATTTGGTGGGCGATTTACCAATCTTATTTCTGGACCCGAGAAAAATCCTATCTTTCTTTGGTGGGCAGTTGTTGCTTCTCTTCATACTCTTTTAACTCAGCTCAGTTATCTTGTTTTTTTCTTTAATGGGTGATTTTTTAGTAACTTATTGATATAATATAATAAAATTGTGTTGAATCTTGAAATAGGAAGAGAGGAAATTGAGCAAGATGGGGGAGAAACCTGAGGTGTTAGATGCTGTATTAAAGGAGACTGTGGATTTGGTAATGGATCTGACTAAAAAGATCAAATTTTTGAACTTATATTTCGTTGGTTTTAATGGGTTTGTTTCCTTTTTTTGTTGGTGTTGTAATTGCAGGAGAATATACCCATTGAAGAAGTTTTTGAAAATTTGAGATGTACCAAAGAGGGTCTTACTGGTACAGCTGCCCAAGAAAGGTTGGCAATTTTTGGGTACAACAAACTAGAGGAGAAGAAGGTGTGGTGATGATTACTCTTTTTTTTTTTCCTTTTTGTAGAATTGTTCCTTTTCTTGTTTTTTTGATTCCCTTGCTGGTCCACTTTGAACTGAATCTCTGTATATTCTCTTCCTTTTTTGATTTGGTACTTTGATGGGTTAGTTTTCTTTTTTTTTTGTTGCTGAAATGTTTCCTCTTTTCTCCTTTTGTTTTCTTTGGATATCTTGTCTGTCTTGTTTGGACTTTGAATGGACTCTTTTTAGCTGAAAATTAGATGTCTTTAGTTGAACTAAGCTGAATTGATGGAGAATTTGATGCTTAAGTTTTTGACGTGAAAGTTAAAAGTGAACTGTTATCATTGTTGAGTGTTATTGTTTGCTGTGTTATAGGAGAGCAAATTCTTGAAATTTCTGGGGTTTATGTGGAACCCCCTCTCATGGGTTATGGAAGCTGCTGCTATTATGGCAATTGCTCTTGCAAATGGAGGAGTAAGTGCTAACAAGCTGATTTACCTTTATATTGGACAATATGCTGGTTCTTTTGACTTAAATTGAATATATGTCGAATTTTGTAGGGAAAGCCTCCGGATTGGCAAGATTTTGTGGGTATTATTACCTTGCTAGTGATTAACTCAACAATTAGTTTTATTGAGGAGAATAATGCTGGCAATGCAGCAGCTGCTCTCATGGCTCGTCTCGCTCCTAAAGCCAAGGTTCTAGATTCACCAACCATCATTGTTATTCAATTGCTATTAGACAGCATGTGAAAGTTGTTAACTTTCATAATTTTGATGGGAAGTATGAGGTTGAGAAACTAATGGAAAGTTGTCTTAATTGTTTGCTCTTGTGATATATGCAGGTTCTTCGAGATGGAAAATGGAATGAAGAAGATGCTGCTGTTCTTGTTCCTGGGGACATTATCAGTATTAAACTGGGAGATATTATTCCTGCAGATGCTCGTCTTCTTGAAGGTGATCCCCTGAAAATTGACCAGGTGATTAAGTTTTTACGATTTAATAAGTGGTTGCTCACTGCATTCAATATTTTGTTTAACTGTGGCACTGATATTATCTATTACTTGCAGTCTGCTTTGACTGGTGAATCTCTTCCTGTAACTAAAGGTCCTGGAGATGGTGTCTACTCTGGTTCTACCTGTAAGCAGGGAGAGATAGAAGCTGTCGTCATCGCCACTGGGGTTCATACCTTTTTTGGGAAGGCTGCACACCTTGTTGACAGTACAAATCAAGTGGGACACTTCCAAAAGGCAAGTTGAACTTGTATTGTCTTATTTGTTTTGAATATTAGTTGATAATCTCATTCTTTTAAATCTCACATTCAATGTTGTTGATGTCTCTATCAGGTTTTGACTGCTATTGGAAACTTCTGCATCTGTTCTATTGCAGTGGGGATGATAATAGAGATCATTGTGATGTACCCTATCCAACACCGCAAATATCGCCCTGGGATTGACAATCTTCTTGTCCTTCTCATTGGTGGAATTCCAATTGCCATGCCAACGGTTCTTTCAGTCACGATGGCAATTGGATCTCATCGGCTCGCTCAACAGGTTTGTTAGTTAGCATCTTGATCTTAGGATGTGGTGTTTCAGCATGTCTTCAATCGTGAGTTATTGTAGTTCAACAGTTCTGATAAGCGATTGCATATTTCATCATTTTAACTATTCAGGGTGCTATTACGAAAAGAATGACAGCTATTGAGGAGATGGCTGGTATGGACGTGCTTTGTAGTGACAAGACAGGGACCCTTACACTAAACAAGCTTACTGTTGACAAAAACCTTGTTGAGGTGAGAATAAGAGTTCAGTCTTGTGTTTATTCCTTATTCCACACCGATTCTGATTTTCTTGTTTGTTCCTGCTAAATTATCAGGTTTTTGCCAAAGGTGTTGACGCAGATACTGTCGTTCTGATGGCAGCTCGAGCGTCTCGTACAGAGAACCAGGATGCCATTGACACTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAGGTAACTTTAGAATTGCATGACTGTGTGATTGGTGTATCCATTTTAGCTAGAGAACTGTTCTAATGCTGCCATTAATGCAGGCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAGGTATGACTGTGATCATCTAAGTAGTCCTTCTTTGCTTGCTTTTACTTTCCGTGATTGCATTTTCTAACCAATCACTGCAATTTGGATTAGATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAGGTATTTTGCTTTCCTTTTATCATCTGTGGAACTCATCATGTCATATATAAATTGAAAGAATCAATTATCTTGCAGCTTAAGCATATAACCTATACTATTATAGTGGAGAGGAGGGATTAATTATCTCTGTCTCCAAGTTCTATCATTGTGTCGAAAAAATAGAGCTTTATTTCGCTTAATCACATATACCCTAACTTCCCATGCAGGAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAGGTATTTCTAATTTTTTCATTTTTTATGATCAATATATTGAAAAATTGTTGGCAAATAGACTGCATGCTATATTGGCAACTTGGTAGTAATGGCTACCCAACCCCTTAATAAAAGGAAGAGAGAAAGGAAAAATGTATCCAGTGAGTAGAGGTTTCCAAAATTATCACCAACTTGAGATGGTAATGCAGTCTGCTAGTAATTCTTTGTACACTGAGCTTGTTGGCTGTTGCATCAAAGACTACTTTTGATTCGTTCCGATATTGGGACTGTGCCTTTTTGTTTTTGATTTTTGGTGAGGACAATATTATAGTGGTACTGGGTTATGTCTCATTTTAGAGGCACCGCCTGGTCTTATTGACTTAAAGTGATGTCTCTGCCCGTCGCTTGGCATTTTCATTTATTGTGTTGATAAGGATTTCAGGCTTTCACAATTGAATTTTAAATACTATTACTTTGTGTTTGTCAACTTGTGTTTTACCAAGATATTGCTTTTTGATGTAAAAAGCTCAGATGTAATTTGGACATGTATCATCTTACTGGTACTGCGTCTTTTGCTACATCAAAGTTCGACATGTTTATGTGCCTGCTTAAATTTCTTGATGTCTGTTCTTTTGGCAGGGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGAGTTTTTATTT</genome_strand>
        <mrna_strand>ACTCTGTTTTGGATTTGGTGGGCGATTTACCAATCTTATTTCTGGACCCGAGAAAAATCCTATCTTTCTTTG................................................................................................................................GAAGAGAGGAAATTGAGCAAGATGGGGGAGAAACCTGAGGTGTTAGATGCTGTATTAAAGGAGACTGTGGATTTG...............................................................................................GAGAATATACCCATTGAAGAAGTTTTTGAAAATTTGAGATGTACCAAAGAGGGTCTTACTGGTACAGCTGCCCAAGAAAGGTTGGCAATTTTTGGGTACAACAAACTAGAGGAGAAGAAG.................................................................................................................................................................................................................................................................................................................................................................................GAGAGCAAATTCTTGAAATTTCTGGGGTTTATGTGGAACCCCCTCTCATGGGTTATGGAAGCTGCTGCTATTATGGCAATTGCTCTTGCAAATGGAGGA......................................................................................GGAAAGCCTCCGGATTGGCAAGATTTTGTGGGTATTATTACCTTGCTAGTGATTAACTCAACAATTAGTTTTATTGAGGAGAATAATGCTGGCAATGCAGCAGCTGCTCTCATGGCTCGTCTCGCTCCTAAAGCCAAG..................................................................................................................................................GTTCTTCGAGATGGAAAATGGAATGAAGAAGATGCTGCTGTTCTTGTTCCTGGGGACATTATCAGTATTAAACTGGGAGATATTATTCCTGCAGATGCTCGTCTTCTTGAAGGTGATCCCCTGAAAATTGACCAG..........................................................................................TCTGCTTTGACTGGTGAATCTCTTCCTGTAACTAAAGGTCCTGGAGATGGTGTCTACTCTGGTTCTACCTGTAAGCAGGGAGAGATAGAAGCTGTCGTCATCGCCACTGGGGTTCATACCTTTTTTGGGAAGGCTGCACACCTTGTTGACAGTACAAATCAAGTGGGACACTTCCAAAAG................................................................................................GTTTTGACTGCTATTGGAAACTTCTGCATCTGTTCTATTGCAGTGGGGATGATAATAGAGATCATTGTGATGTACCCTATCCAACACCGCAAATATCGCCCTGGGATTGACAATCTTCTTGTCCTTCTCATTGGTGGAATTCCAATTGCCATGCCAACGGTTCTTTCAGTCACGATGGCAATTGGATCTCATCGGCTCGCTCAACAG.......................................................................................................................GGTGCTATTACGAAAAGAATGACAGCTATTGAGGAGATGGCTGGTATGGACGTGCTTTGTAGTGACAAGACAGGGACCCTTACACTAAACAAGCTTACTGTTGACAAAAACCTTGTTGAG...................................................................................GTTTTTGCCAAAGGTGTTGACGCAGATACTGTCGTTCTGATGGCAGCTCGAGCGTCTCGTACAGAGAACCAGGATGCCATTGACACTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAG................................................................................GCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAG..........................................................................................ATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAG..............................................................................................................................................................................................................GAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTG................................................................................................................AGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGAGTTTTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714307" ref_strand="+" ref_description="SGN-E714307 [FB11AD02]">
      <seq>cagatttcttcccgcgtgtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcacaagatctcgaagttggtcgtttgttgagcgtcctggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacatcttcagcngttaaaagtgccttatatattttatacattttttttgctttgaattcttggntcatcttttcctgctttcatgtcttgactacattatatatattacaatttgaccagaatgaatattaagctataacagcattcattatctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29367" stop="27434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29062" g_stop="28877" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="200" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28876" i_stop="28797" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28796" g_stop="28614" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="383" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28613" i_stop="28530" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28529" g_stop="28351" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="562" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28350" i_stop="28092" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28091" g_stop="27725" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="930" r_length="368" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E714307" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>915</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29062" e_stop="28877"/>
          <exon e_start="28796" e_stop="28614"/>
          <exon e_start="28529" e_stop="28351"/>
          <exon e_start="28091" e_stop="27725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACA-TTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGA</genome_strand>
        <mrna_strand>CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCNGTTAAAAGTGCCTTATATATTTTATACATTTTTTTTGCTTTGAATTCTTGGNTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTTGACCAGAATGAATATTAAGCTATAACAGCATTCATTATCTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734708" ref_strand="+" ref_description="SGN-E734708 [LB13BE09]">
      <seq>atcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacatcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaattcttggttcgtcttttcctgctttcatgtcttgactacattatatatattacaattgaccaagaatgaatattaagctataacagcattcattatctatattctcaagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28976" stop="27425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28676" g_stop="28614" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28613" i_stop="28530" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28529" g_stop="28351" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="242" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28350" i_stop="28092" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28091" g_stop="27725" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="609" r_length="367" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="610" polyA_stop="620"/>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E734708" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28676" e_stop="28614"/>
          <exon e_start="28529" e_stop="28351"/>
          <exon e_start="28091" e_stop="27725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGA</genome_strand>
        <mrna_strand>ATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCGTCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366207" ref_strand="+" ref_description="SGN-E366207 [cLPT-1-K19](-)">
      <seq>agtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaattgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgagttacctctggagcgacaagttcatagtagtaacatcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaattcttggttcatcttttcctgctttcatgtcttgactacattatatatgttacaattgaccaagaatgaatattaagctataacagcattcattatccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29001" stop="27434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28701" g_stop="28614" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28613" i_stop="28530" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28529" g_stop="28351" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="267" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28350" i_stop="28092" i_length="259">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28091" g_stop="27737" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="620" r_length="353" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="621" polyA_stop="639"/>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E366207" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28701" e_stop="28614"/>
          <exon e_start="28529" e_stop="28351"/>
          <exon e_start="28091" e_stop="27737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCT</genome_strand>
        <mrna_strand>AGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATTGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGA--GTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATGTTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740269" ref_strand="+" ref_description="SGN-E740269 [LC20DB01]">
      <seq>ctaccaatttcaatcgatttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacatcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaattcttggttcatcttttcctgctttcatgtcttgactacattatatatattacaattgaccaagaatgaatattaagctataacagcattcattatctaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28696" stop="27434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28414" g_stop="28351" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28350" i_stop="28092" i_length="259">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28091" g_stop="27737" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="419" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="420" polyA_stop="440"/>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E740269" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28414" e_stop="28351"/>
          <exon e_start="28091" e_stop="27737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCT</genome_strand>
        <mrna_strand>CTACCAATTTCAATCGATTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740297" ref_strand="+" ref_description="SGN-E740297 [LC20DD12]">
      <seq>ctaccaatttcaatgagtcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacatcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaattcttggttcatcttttcctgctttcatgtcttgactacattatatatattacaattgaccaagaatgaatattaagctataacagcattcattatctaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28714" stop="27434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28414" g_stop="28351" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28350" i_stop="28092" i_length="259">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28091" g_stop="27737" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="420" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="421" polyA_stop="441"/>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E740297" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28414" e_stop="28351"/>
          <exon e_start="28091" e_stop="27737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCAATTTCAATGAG-CTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCT</genome_strand>
        <mrna_strand>CTACCAATTTCAATGAGTCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740982" ref_strand="+" ref_description="SGN-E740982 [LC23DA01]">
      <seq>ctaccaatttcaatgatcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacatcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaattcttggttcatcttttcctgctttcatgtcttgactacattatatatattacaattgaccaagaatgaatattaagctataacagcattcattatctaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28714" stop="27434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28414" g_stop="28351" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28350" i_stop="28092" i_length="259">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28091" g_stop="27737" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="419" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="420" polyA_stop="440"/>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E740982" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28414" e_stop="28351"/>
          <exon e_start="28091" e_stop="27737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCT</genome_strand>
        <mrna_strand>CTACCAATTTCAATGATCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737128" ref_strand="+" ref_description="SGN-E737128 [LC08CD02]">
      <seq>ctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacatcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaattcttggttcatcttttcctgctttcatgtcttgactacattatatatattacaattgaccaagaatgaatattaagctataacagcattcattatctaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28714" stop="27434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28414" g_stop="28351" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28350" i_stop="28092" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28091" g_stop="27737" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="419" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="420" polyA_stop="440"/>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E737128" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28414" e_stop="28351"/>
          <exon e_start="28091" e_stop="27737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCT</genome_strand>
        <mrna_strand>CTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738495" ref_strand="+" ref_description="SGN-E738495 [LC13DE04]">
      <seq>ctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacatcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaattcttggttcatcttttcctgctttcatgtcttgactacattatatatattacaattgaccaagaatgaatattaagctataacagcattcattatctaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28714" stop="27434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28414" g_stop="28351" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28350" i_stop="28092" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28091" g_stop="27737" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="419" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="420" polyA_stop="440"/>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E738495" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28414" e_stop="28351"/>
          <exon e_start="28091" e_stop="27737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCT</genome_strand>
        <mrna_strand>CTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368178" ref_strand="+" ref_description="SGN-E368178 [TUS-22-M12]">
      <seq>ctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacatcttcagcgtataaaatatatctagatattttatacattgttgtgctttgaattctgggttcatcttttcctgcttttatgtattgactacattatatatattacaatggaccaagaatgaatattaagctatatcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28738" stop="27448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28438" g_stop="28351" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28350" i_stop="28092" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28091" g_stop="27748" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="432" r_length="344" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E368178" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28438" e_stop="28351"/>
          <exon e_start="28091" e_stop="27748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGC</genome_strand>
        <mrna_strand>CTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTATAAAATATATCTAGATATTTTATACATTGTTGTGCTTTGAATTCTGGGTTCATCTTTTCCTGCTTTTATGTATTGACTACATTATATATATTACAATGGACCAAGAATGAATATTAAGCTATATCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734722" ref_strand="+" ref_description="SGN-E734722 [LB13BF11]">
      <seq>gcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcacaagatctcgaagttggtcgtttgttgagcgtcctggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacatcttcagcgtttaaaagtgccttatatattttatacatttttttgcttttgattcttggttcatcttttcctgctttcatgtcttgaatacattatatatattacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29329" stop="27478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29029" g_stop="28877" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28876" i_stop="28797" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28796" g_stop="28614" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="336" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28613" i_stop="28530" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28529" g_stop="28351" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="515" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28350" i_stop="28092" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28091" g_stop="27778" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="829" r_length="314" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E734722" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29029" e_stop="28877"/>
          <exon e_start="28796" e_stop="28614"/>
          <exon e_start="28529" e_stop="28351"/>
          <exon e_start="28091" e_stop="27778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATT</genome_strand>
        <mrna_strand>GCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTTGATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGAATACATTATATATATTACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735041" ref_strand="+" ref_description="SGN-E735041 [LB14BB02]">
      <seq>cattacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcacaagatctcgaagttggtcgtttgttgagcgtcctggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacatcttcagcgtttaaaagtgccttatatattttatcatttttttgctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29346" stop="27537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29046" g_stop="28877" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28876" i_stop="28797" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28796" g_stop="28614" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="353" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28613" i_stop="28530" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28529" g_stop="28351" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="532" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28350" i_stop="28092" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28091" g_stop="27837" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="786" r_length="254" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E735041" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29046" e_stop="28877"/>
          <exon e_start="28796" e_stop="28614"/>
          <exon e_start="28529" e_stop="28351"/>
          <exon e_start="28091" e_stop="27837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTG</genome_strand>
        <mrna_strand>CATTACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTAT-CATTTTTTTGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240718" ref_strand="+" ref_description="SGN-E240718 [cLED-24-C11]">
      <seq>ctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28738" stop="27614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28438" g_stop="28351" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28350" i_stop="28092" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28091" g_stop="27914" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="266" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E240718" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28438" e_stop="28351"/>
          <exon e_start="28091" e_stop="27914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTC</genome_strand>
        <mrna_strand>CTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277360" ref_strand="+" ref_description="SGN-E277360 [cLER-3-O9]">
      <seq>gaaataggaagagaggaaattgagcaagatgggggagaaacctgaggtgttagatgctgtattaaaggagactgtggatttggagaatatacccattgaagaagtttttgaaaatttgagatgtaccaaagagggtcttactggtacagctgcccaagaaaggttggcaatttttgggtacaacaaactagaggagaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35135" stop="27650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34835" g_stop="34754" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34753" i_stop="34659" i_length="95">
            <donor d_prob="0.283" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34658" g_stop="34539" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="202" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34538" i_stop="28509" i_length="6030">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28508" g_stop="28351" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="360" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28350" i_stop="28092" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28091" g_stop="27950" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="502" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E277360" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34835" e_stop="34754"/>
          <exon e_start="34658" e_stop="34539"/>
          <exon e_start="28508" e_stop="28351"/>
          <exon e_start="28091" e_stop="27950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATAGGAAGAGAGGAAATTGAGCAAGATGGGGGAGAAACCTGAGGTGTTAGATGCTGTATTAAAGGAGACTGTGGATTTGGTAATGGATCTGACTAAAAAGATCAAATTTTTGAACTTATATTTCGTTGGTTTTAATGGGTTTGTTTCCTTTTTTTGTTGGTGTTGTAATTGCAGGAGAATATACCCATTGAAGAAGTTTTTGAAAATTTGAGATGTACCAAAGAGGGTCTTACTGGTACAGCTGCCCAAGAAAGGTTGGCAATTTTTGGGTACAACAAACTAGAGGAGAAGAAGGTGTGGTGATGATTACTCTTTTTTTTTTTCCTTTTTGTAGAATTGTTCCTTTTCTTGTTTTTTTGATTCCCTTGCTGGTCCACTTTGAACTGAATCTCTGTATATTCTCTTCCTTTTTTGATTTGGTACTTTGATGGGTTAGTTTTCTTTTTTTTTTGTTGCTGAAATGTTTCCTCTTTTCTCCTTTTGTTTTCTTTGGATATCTTGTCTGTCTTGTTTGGACTTTGAATGGACTCTTTTTAGCTGAAAATTAGATGTCTTTAGTTGAACTAAGCTGAATTGATGGAGAATTTGATGCTTAAGTTTTTGACGTGAAAGTTAAAAGTGAACTGTTATCATTGTTGAGTGTTATTGTTTGCTGTGTTATAGGAGAGCAAATTCTTGAAATTTCTGGGGTTTATGTGGAACCCCCTCTCATGGGTTATGGAAGCTGCTGCTATTATGGCAATTGCTCTTGCAAATGGAGGAGTAAGTGCTAACAAGCTGATTTACCTTTATATTGGACAATATGCTGGTTCTTTTGACTTAAATTGAATATATGTCGAATTTTGTAGGGAAAGCCTCCGGATTGGCAAGATTTTGTGGGTATTATTACCTTGCTAGTGATTAACTCAACAATTAGTTTTATTGAGGAGAATAATGCTGGCAATGCAGCAGCTGCTCTCATGGCTCGTCTCGCTCCTAAAGCCAAGGTTCTAGATTCACCAACCATCATTGTTATTCAATTGCTATTAGACAGCATGTGAAAGTTGTTAACTTTCATAATTTTGATGGGAAGTATGAGGTTGAGAAACTAATGGAAAGTTGTCTTAATTGTTTGCTCTTGTGATATATGCAGGTTCTTCGAGATGGAAAATGGAATGAAGAAGATGCTGCTGTTCTTGTTCCTGGGGACATTATCAGTATTAAACTGGGAGATATTATTCCTGCAGATGCTCGTCTTCTTGAAGGTGATCCCCTGAAAATTGACCAGGTGATTAAGTTTTTACGATTTAATAAGTGGTTGCTCACTGCATTCAATATTTTGTTTAACTGTGGCACTGATATTATCTATTACTTGCAGTCTGCTTTGACTGGTGAATCTCTTCCTGTAACTAAAGGTCCTGGAGATGGTGTCTACTCTGGTTCTACCTGTAAGCAGGGAGAGATAGAAGCTGTCGTCATCGCCACTGGGGTTCATACCTTTTTTGGGAAGGCTGCACACCTTGTTGACAGTACAAATCAAGTGGGACACTTCCAAAAGGCAAGTTGAACTTGTATTGTCTTATTTGTTTTGAATATTAGTTGATAATCTCATTCTTTTAAATCTCACATTCAATGTTGTTGATGTCTCTATCAGGTTTTGACTGCTATTGGAAACTTCTGCATCTGTTCTATTGCAGTGGGGATGATAATAGAGATCATTGTGATGTACCCTATCCAACACCGCAAATATCGCCCTGGGATTGACAATCTTCTTGTCCTTCTCATTGGTGGAATTCCAATTGCCATGCCAACGGTTCTTTCAGTCACGATGGCAATTGGATCTCATCGGCTCGCTCAACAGGTTTGTTAGTTAGCATCTTGATCTTAGGATGTGGTGTTTCAGCATGTCTTCAATCGTGAGTTATTGTAGTTCAACAGTTCTGATAAGCGATTGCATATTTCATCATTTTAACTATTCAGGGTGCTATTACGAAAAGAATGACAGCTATTGAGGAGATGGCTGGTATGGACGTGCTTTGTAGTGACAAGACAGGGACCCTTACACTAAACAAGCTTACTGTTGACAAAAACCTTGTTGAGGTGAGAATAAGAGTTCAGTCTTGTGTTTATTCCTTATTCCACACCGATTCTGATTTTCTTGTTTGTTCCTGCTAAATTATCAGGTTTTTGCCAAAGGTGTTGACGCAGATACTGTCGTTCTGATGGCAGCTCGAGCGTCTCGTACAGAGAACCAGGATGCCATTGACACTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAGGTAACTTTAGAATTGCATGACTGTGTGATTGGTGTATCCATTTTAGCTAGAGAACTGTTCTAATGCTGCCATTAATGCAGGCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAGGTATGACTGTGATCATCTAAGTAGTCCTTCTTTGCTTGCTTTTACTTTCCGTGATTGCATTTTCTAACCAATCACTGCAATTTGGATTAGATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAGGTATTTTGCTTTCCTTTTATCATCTGTGGAACTCATCATGTCATATATAAATTGAAAGAATCAATTATCTTGCAGCTTAAGCATATAACCTATACTATTATAGTGGAGAGGAGGGATTAATTATCTCTGTCTCCAAGTTCTATCATTGTGTCGAAAAAATAGAGCTTTATTTCGCTTAATCACATATACCCTAACTTCCCATGCAGGAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAGGTATTTCTAATTTTTTCATTTTTTATGATCAATATATTGAAAAATTGTTGGCAAATAGACTGCATGCTATATTGGCAACTTGGTAGTAATGGCTACCCAACCCCTTAATAAAAGGAAGAGAGAAAGGAAAAATGTATCCAGTGAGTAGAGGTTTCCAAAATTATCACCAACTTGAGATGGTAATGCAGTCTGCTAGTAATTCTTTGTACACTGAGCTTGTTGGCTGTTGCATCAAAGACTACTTTTGATTCGTTCCGATATTGGGACTGTGCCTTTTTGTTTTTGATTTTTGGTGAGGACAATATTATAGTGGTACTGGGTTATGTCTCATTTTAGAGGCACCGCCTGGTCTTATTGACTTAAAGTGATGTCTCTGCCCGTCGCTTGGCATTTTCATTTATTGTGTTGATAAGGATTTCAGGCTTTCACAATTGAATTTTAAATACTATTACTTTGTGTTTGTCAACTTGTGTTTTACCAAGATATTGCTTTTTGATGTAAAAAGCTCAGATGTAATTTGGACATGTATCATCTTACTGGTACTGCGTCTTTTGCTACATCAAAGTTCGACATGTTTATGTGCCTGCTTAAATTTCTTGATGTCTGTTCTTTTGGCAGGGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTG</genome_strand>
        <mrna_strand>GAAATAGGAAGAGAGGAAATTGAGCAAGATGGGGGAGAAACCTGAGGTGTTAGATGCTGTATTAAAGGAGACTGTGGATTTG...............................................................................................GAGAATATACCCATTGAAGAAGTTTTTGAAAATTTGAGATGTACCAAAGAGGGTCTTACTGGTACAGCTGCCCAAGAAAGGTTGGCAATTTTTGGGTACAACAAACTAGAGGAGAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710758" ref_strand="+" ref_description="SGN-E710758 [FA56CE03]">
      <seq>cccctttgagcactatcagtcaggccctgatatttgtcacaagatctcgaagttggtcgtttgttgagcgtcctggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggacagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggcgaagttgaagggtcttgacatagagacaattcaccagtcatacacctgtttgatgtgcgagcaactatgactactgctacttaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29283" stop="27662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28989" g_stop="28877" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28876" i_stop="28797" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28796" g_stop="28614" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="296" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28613" i_stop="28530" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28529" g_stop="28351" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="475" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28350" i_stop="28092" i_length="259">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28091" g_stop="27962" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="606" r_length="131" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E710758" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28989" e_stop="28877"/>
          <exon e_start="28796" e_stop="28614"/>
          <exon e_start="28529" e_stop="28351"/>
          <exon e_start="28091" e_stop="27962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACA-CTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACT</genome_strand>
        <mrna_strand>CCCCTTTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGACAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGCGAAGTTGAAGGGTCTTGACATAGAGACAATTCACCAGTCATACACCTGTTTGATGTGCGAGCAACTATGACTACTGCTACTTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232831" ref_strand="+" ref_description="SGN-E232831 [cLED-8-G7]">
      <seq>tcaggccctgatatttgtcacaagatctcgaagttggtcgtttgttgagcgtcctggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29270" stop="27691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28970" g_stop="28877" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28876" i_stop="28797" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28796" g_stop="28614" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="277" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28613" i_stop="28530" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28529" g_stop="28351" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="456" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28350" i_stop="28092" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28091" g_stop="27991" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="557" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E232831" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28970" e_stop="28877"/>
          <exon e_start="28796" e_stop="28614"/>
          <exon e_start="28529" e_stop="28351"/>
          <exon e_start="28091" e_stop="27991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTG</genome_strand>
        <mrna_strand>TCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208016" ref_strand="+" ref_description="SGN-E208016 [cLEC-34-I3]">
      <seq>ggcaatgatgacagtcattttcttttgggcagcatatgagacagatttcttcccgcgtgtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcacaagatctcgaagttggtcgtttgttgagcgtcctggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29889" stop="28091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29589" g_stop="29535" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29534" i_stop="29063" i_length="472">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29062" g_stop="28877" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="241" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28876" i_stop="28797" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28796" g_stop="28614" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="424" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28613" i_stop="28530" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28529" g_stop="28391" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="563" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E208016" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29589" e_stop="29535"/>
          <exon e_start="29062" e_stop="28877"/>
          <exon e_start="28796" e_stop="28614"/>
          <exon e_start="28529" e_stop="28391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATC</genome_strand>
        <mrna_strand>GGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242232" ref_strand="+" ref_description="SGN-E242232 [cLED-37-O18]">
      <seq>gccctgatatttgtcacaagatctacaagttggtcatttgttgagcgtcctgggttgttgcttgaggttgcttttctgattgctcaactgggtgccaccttgattgctgcttatgcaagctggagctttgctgcaatctaaggaattggctggggttgggcaggagtgatctggctctacaattcagtattttacttcccgcttgatatcatcaagttcttaatcagatatgctctcagaggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaacaatgatttcggaaaagaacaacgtgagcttcagtgggcccacgcacagaggacccttcatgggctgcaagttcctgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29266" stop="28133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28966" g_stop="28877" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28876" i_stop="28797" i_length="80">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28796" g_stop="28614" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="273" r_length="183" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28613" i_stop="28530" i_length="84">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28529" g_stop="28433" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="370" r_length="97" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E242232" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28966" e_stop="28877"/>
          <exon e_start="28796" e_stop="28614"/>
          <exon e_start="28529" e_stop="28433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACA</genome_strand>
        <mrna_strand>GCCCTGATATTTGTCACAAGATCTACAAGTTGGTCATTTGTTGAGCGTCCTGGGTTGTTGCTTGAGGTTGCTTTTCTGATTGCTCAACTG................................................................................GGTGCCACCTTGATTGCTGCTTATGCAAGCTGGAGCTTTGCTGCAATCTAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTCAGTATTTTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGAGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAACAATGATTTCGGAAAAGAACAACGTGAGCTTCAGTGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305015" ref_strand="+" ref_description="SGN-E305015 [cLEX-10-A14]">
      <seq>gtcattttctttcgggcagcatatgagacagatttcttcccgcgtgtattaggggtatcaacacttcagaggacagcaactgatgacttcaagaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaagccctgatatttgtcacaagatctcgaaattggtcgtttgttgagcgtcctggttagttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaagaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaacgattgctttcaccaggaagaaagatttcggaaaagaacaacgtgagctttaatgggccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29876" stop="28171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29576" g_stop="29535" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29534" i_stop="29063" i_length="472">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29062" g_stop="28877" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="228" r_length="186" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28876" i_stop="28797" i_length="80">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28796" g_stop="28614" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="411" r_length="183" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28613" i_stop="28530" i_length="84">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28529" g_stop="28471" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="470" r_length="59" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E305015" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29576" e_stop="29535"/>
          <exon e_start="29062" e_stop="28877"/>
          <exon e_start="28796" e_stop="28614"/>
          <exon e_start="28529" e_stop="28471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCA</genome_strand>
        <mrna_strand>GTCATTTTCTTTCGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTAGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAAGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAAGCCCTGATATTTGTCACAAGATCTCGAAATTGGTCGTTTGTTGAGCGTCCTGGTTAGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAAGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAACG....................................................................................ATTGCTTTCACCAGGAAGAAAGATTTCGGAAAAGAACAACGTGAGCTTTAATGGGCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248550" ref_strand="+" ref_description="SGN-E248550 [cLEF-59-H24]">
      <seq>tgcaatcctcaatgacggtaccattatgacaatatcaaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacagtcattttcttttgggcagcatatgagacagatttcttcccgcgtgtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcacaagatctcgaagttggtcgtttgttgagcgtcctggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30002" stop="28309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29695" g_stop="29535" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="178" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29534" i_stop="29063" i_length="472">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29062" g_stop="28877" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="364" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28876" i_stop="28797" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28796" g_stop="28614" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="547" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28613" i_stop="28530" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28529" g_stop="28518" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="559" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E248550" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29695" e_stop="29535"/>
          <exon e_start="29062" e_stop="28877"/>
          <exon e_start="28796" e_stop="28614"/>
          <exon e_start="28529" e_stop="28518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACC</genome_strand>
        <mrna_strand>GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289247" ref_strand="+" ref_description="SGN-E289247 [cLES-18-C12]">
      <seq>tggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29216" stop="28309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28916" g_stop="28877" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28876" i_stop="28797" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28796" g_stop="28614" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="223" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28613" i_stop="28530" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28529" g_stop="28520" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="233" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E289247" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>233</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28916" e_stop="28877"/>
          <exon e_start="28796" e_stop="28614"/>
          <exon e_start="28529" e_stop="28520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCA</genome_strand>
        <mrna_strand>TGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331428" ref_strand="+" ref_description="SGN-E331428 [cTOD-9-B24]">
      <seq>aagtttgactttccacctttcatggtgcttatcattgcaatcctcaatgacggtaccattatgacaatatcaaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacagtcattttcttttgggcagcatatgagacagatttcttcccgcgtgtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcacaagatctcgaagttggtcgtttgttgagcgtcctggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggccctggatcttgttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30628" stop="28324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30328" g_stop="30277" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30276" i_stop="29696" i_length="581">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29695" g_stop="29535" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="213" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29534" i_stop="29063" i_length="472">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29062" g_stop="28877" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="399" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28876" i_stop="28797" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28796" g_stop="28624" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="572" r_length="173" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E331428" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30328" e_stop="30277"/>
          <exon e_start="29695" e_stop="29535"/>
          <exon e_start="29062" e_stop="28877"/>
          <exon e_start="28796" e_stop="28624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCT</genome_strand>
        <mrna_strand>AAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCCTGGATCTTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727294" ref_strand="+" ref_description="SGN-E727294 [LA14BB07]">
      <seq>tgtgatagctgttgatgatgccactgatgctgctcgaattgcttctgacattgatcttactgaacctggtctcactgtcatcattaatgctgttctgactactcgagcaatctttcaaaggatgaaaaactatacaatatatgctgtttccatcacaatccgaattgggcttggttatatgcttctggcccttatctggaaatttgactttccacctttcatggcgcttatcattgcaatcctcgatgacggtaccattatgacaatatcataggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacaatcattttcttttgggcagcatatgagacatatttcttcccacgtgtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgaacactatcactcaggccctgatatttgtcacaaaatctcgaagttggtcatttgttgagcgtcctggtttgttgcttgcggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaagagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcacatatgctctcaatggaacggcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31103" stop="28337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30803" g_stop="30668" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30667" i_stop="30482" i_length="186">
            <donor d_prob="0.848" d_score="0.94"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30481" g_stop="30449" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="169" r_length="33" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30448" i_stop="30359" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30358" g_stop="30277" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="251" r_length="82" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30276" i_stop="29696" i_length="581">
            <donor d_prob="0.902" d_score="0.94"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29695" g_stop="29535" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="412" r_length="161" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29534" i_stop="29063" i_length="472">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29062" g_stop="28877" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="598" r_length="186" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28876" i_stop="28797" i_length="80">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28796" g_stop="28637" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="758" r_length="160" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E727294" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30803" e_stop="30668"/>
          <exon e_start="30481" e_stop="30449"/>
          <exon e_start="30358" e_stop="30277"/>
          <exon e_start="29695" e_stop="29535"/>
          <exon e_start="29062" e_stop="28877"/>
          <exon e_start="28796" e_stop="28637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCT</genome_strand>
        <mrna_strand>TGTGATAGCTGTTGATGATGCCACTGATGCTGCTCGAATTGCTTCTGACATTGATCTTACTGAACCTGGTCTCACTGTCATCATTAATGCTGTTCTGACTACTCGAGCAATCTTTCAAAGGATGAAAAACTATACA..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGAATTGGG..........................................................................................CTTGGTTATATGCTTCTGGCCCTTATCTGGAAATTTGACTTTCCACCTTTCATGGCGCTTATCATTGCAATCCTCGATGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCATAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAATCATTTTCTTTTGGGCAGCATATGAGACATATTTCTTCCCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAACACTATCACTCAGGCCCTGATATTTGTCACAAAATCTCGAAGTTGGTCATTTGTTGAGCGTCCTGGTTTGTTGCTTGCGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAAGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCACATATGCTCTCAATGGAACGGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710392" ref_strand="+" ref_description="SGN-E710392 [FA55BB08]">
      <seq>ccattgctgatattgggatagctgttgatgatgccactgatgctgctcgtagtgcttctgacattgttcttactgaacctggtctcagtgtcatcattagtgctgttctgactagtcgagcaatctttcaaaggatgaaaaactatacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggcccttatctggaagtttgactttccacctttcatggtgcttatcattgcaatcctcaatgacggtaccattatgacaatatcaaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacagtcattttcttttgggcagcatatgagacagatttcttcccgcgtgtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcacaagatctcgaagttggtcgtttgttgagcgtcctggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31111" stop="28351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30816" g_stop="30668" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30667" i_stop="30482" i_length="186">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30481" g_stop="30449" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="182" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30448" i_stop="30359" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30358" g_stop="30277" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="264" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30276" i_stop="29696" i_length="581">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29695" g_stop="29535" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="425" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29534" i_stop="29063" i_length="472">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29062" g_stop="28877" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="611" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28876" i_stop="28797" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28796" g_stop="28651" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="757" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E710392" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30816" e_stop="30668"/>
          <exon e_start="30481" e_stop="30449"/>
          <exon e_start="30358" e_stop="30277"/>
          <exon e_start="29695" e_stop="29535"/>
          <exon e_start="29062" e_stop="28877"/>
          <exon e_start="28796" e_stop="28651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCT</genome_strand>
        <mrna_strand>CCATTGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689995" ref_strand="+" ref_description="SGN-E689995 [LH_Ea02F17]">
      <seq>cgcttgatctgactaatcgagcaatctttcaaaggatgaaaaactacacgatatatgactgtttccatcacaatccgtattgtgcttggatttatgcttctggcccttatctggaagtttgactttccacctttcatggtgcttatcattgcaatccacaatgacggtaccattatgacaatatcaaaggatacggtcaaaccatctcctctgcctgataattggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacagtcattttcttttgggcatcatatgacacacatttcttcccgcgtgaatgtggggtatcaacacttcaaagaacagcaactgatgacttcaagaaacttgcatcatcaattgaccttcaagtgagcactatcactcatgccctgatatttgtcacaacatctcgaagttggtcatttgttgagcgtcctggattgttgcttgaggatgcttttctgatagctcaactggttgccaccttcattgctgcttatgccagttggagctttgctgcgatctaacgaattgcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31015" stop="28435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30716" g_stop="30668" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30667" i_stop="30482" i_length="186">
            <donor d_prob="0.848" d_score="0.88"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30481" g_stop="30449" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="84" r_length="34" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30448" i_stop="30359" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30358" g_stop="30277" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="166" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30276" i_stop="29696" i_length="581">
            <donor d_prob="0.902" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29695" g_stop="29535" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="327" r_length="161" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29534" i_stop="29063" i_length="472">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29062" g_stop="28877" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="513" r_length="186" r_score="0.919"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28876" i_stop="28797" i_length="80">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28796" g_stop="28735" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="575" r_length="62" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E689995" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30716" e_stop="30668"/>
          <exon e_start="30481" e_stop="30449"/>
          <exon e_start="30358" e_stop="30277"/>
          <exon e_start="29695" e_stop="29535"/>
          <exon e_start="29062" e_stop="28877"/>
          <exon e_start="28796" e_stop="28735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCT-GTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATG-CTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTG</genome_strand>
        <mrna_strand>CGCTTGATCTGACTAATCGAGCAATCTTTCAAAGGATGAAAAACTACACG..........................................................................................................................................................................................ATATATGACTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGATTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCACAATGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCAAAGGATACGGTCAAACCATCTCCTCTGCCTGATAATTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCATCATATGACACACATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGAATGTGGGGTATCAACACTTCAAAGAACAGCAACTGATGACTTCAAGAAACTTGCATCATCAATTGACCTTCAAGTGAGCACTATCACTCATGCCCTGATATTTGTCACAACATCTCGAAGTTGGTCATTTGTTGAGCGTCCTGGATTGTTGCTTGAGGATGCTTTTCTGATAGCTCAACTG................................................................................GTTGCCACCTTCATTGCTGCTTATGCCAGTTGGAGCTTTGCTGCGATCTAACGAATTGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261445" ref_strand="+" ref_description="SGN-E261445 [cLEG-57-F4]">
      <seq>gctggagtattccctgagcacaaatatgagattgtaaaacgcttgcaagctaggaagcatatctgtggaatgactggagatggagtcaatgacgctcctgctttaaagaaggctgatattgggatagctgttgatgatgccactgatgctgctcgtagtgcttctgacattgttcttactgaacctggtctcagtgtcatcattagtgctgttctgactagtcgagcaatctttcaaaggatgaaaaactatacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggcccttatctggaagtttgactttccacctttcatggtgcttatcattgcaatcctcaatgacggtaccattatgacaatatcaaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacagtcattttcttttgggcagcatatgagacagatttcttcccgcgtgtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcacaagatctcgaagttggtcgtttggtgagcgtcctggtttggtgctttgtggtgcttttctgatttgctcactggttgccacctgattgctgtttatgcaagttggagctttgctgcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31334" stop="28450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31034" g_stop="31019" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31018" i_stop="30907" i_length="112">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30906" g_stop="30668" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="255" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30667" i_stop="30482" i_length="186">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30481" g_stop="30449" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="288" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30448" i_stop="30359" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30358" g_stop="30277" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="370" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30276" i_stop="29696" i_length="581">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29695" g_stop="29535" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="531" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29534" i_stop="29063" i_length="472">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29062" g_stop="28877" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="717" r_length="186" r_score="0.952"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28876" i_stop="28797" i_length="80">
            <donor d_prob="0.996" d_score="0.84"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28796" g_stop="28750" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="763" r_length="46" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E261445" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31034" e_stop="31019"/>
          <exon e_start="30906" e_stop="30668"/>
          <exon e_start="30481" e_stop="30449"/>
          <exon e_start="30358" e_stop="30277"/>
          <exon e_start="29695" e_stop="29535"/>
          <exon e_start="29062" e_stop="28877"/>
          <exon e_start="28796" e_stop="28750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGA-TTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAAT</genome_strand>
        <mrna_strand>GCTGGAGTATTCCCTG................................................................................................................AGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGGTGAGCGTCCTGGTTTGGTGCTTTGTGGTGCTTTTCTGATTTGCTC-ACTG................................................................................GTTGCCACC-TGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202221" ref_strand="+" ref_description="SGN-E202221 [cLEC-7-L20]">
      <seq>ttccatcacaatccgtattgtgcttggatttatgcttctggcccttatctggaagtttgactttccacctttcatggtgcttatcattgcaatcctcaatgacggtaccattatgacaatatcaaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacagtcattttcttttgggcagcatatgagacagatttcttcccgcgtgtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcacaagatctcgaaagtggtcgtttgttgagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30770" stop="28620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30470" g_stop="30449" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30448" i_stop="30359" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30358" g_stop="30277" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="104" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30276" i_stop="29696" i_length="581">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29695" g_stop="29535" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="265" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29534" i_stop="29063" i_length="472">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29062" g_stop="28920" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="408" r_length="143" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E202221" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30470" e_stop="30449"/>
          <exon e_start="30358" e_stop="30277"/>
          <exon e_start="29695" e_stop="29535"/>
          <exon e_start="29062" e_stop="28920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCG</genome_strand>
        <mrna_strand>TTCCATCACAATCCGTATTGTG..........................................................................................CTTGGATTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAAGTGGTCGTTTGTTGAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730038" ref_strand="+" ref_description="SGN-E730038 [LA22DE01]">
      <seq>gatgggtttgctggtgttttccctgagcacaaatatgagatagtaaagcgcttgcaagctaggaaacatatctgtggtatgactggtgatggagtcaatgatgctcctgctctaaagaaagctgatattggaattgctgttgacgatgcaactgatgcggctcgcagtgcttctgatattgtccttactgaacctggtcttagtgtcatcattagtgctgttttgaccagtcgagcaatctttcaaaggatgaaaaattacacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggctctgatctggaagtttgactttccgcctttcatggtgcttatcattgcaattcttaatgatggtaccattatgacgatatcgaaggatagggtcaaaccatctcctctgcctgatagctggaaactggctgagatttttactactggagttgttcttggtggctacttggcaatgatgacggtcattttcttttgggccgcatacaaaacaaatttcttcccgcgaatatttggggtatcaacacttgagaaaacagcaactgattttaggaagctcgccctctgcgatataccttcaagtaaacactatcagtcaggccctgatattcgttacaagatctcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31227" stop="28639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31043" g_stop="31019" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31018" i_stop="30907" i_length="112">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.879" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30906" g_stop="30668" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="264" r_length="239" r_score="0.912"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30667" i_stop="30482" i_length="186">
            <donor d_prob="0.848" d_score="0.92"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30481" g_stop="30449" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="297" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30448" i_stop="30359" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30358" g_stop="30277" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="379" r_length="82" r_score="0.927"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30276" i_stop="29696" i_length="581">
            <donor d_prob="0.902" d_score="0.92"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29695" g_stop="29535" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="540" r_length="161" r_score="0.925"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29534" i_stop="29063" i_length="472">
            <donor d_prob="0.994" d_score="0.88"/>
            <acceptor a_prob="0.989" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29062" g_stop="28939" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="662" r_length="122" r_score="0.831"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E730038" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31043" e_stop="31019"/>
          <exon e_start="30906" e_stop="30668"/>
          <exon e_start="30481" e_stop="30449"/>
          <exon e_start="30358" e_stop="30277"/>
          <exon e_start="29695" e_stop="29535"/>
          <exon e_start="29062" e_stop="28939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGTTTTGCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTG-CATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAA</genome_strand>
        <mrna_strand>GATGGGTTTGCTGGTGTTTTCCCTG................................................................................................................AGCACAAATATGAGATAGTAAAGCGCTTGCAAGCTAGGAAACATATCTGTGGTATGACTGGTGATGGAGTCAATGATGCTCCTGCTCTAAAGAAAGCTGATATTGGAATTGCTGTTGACGATGCAACTGATGCGGCTCGCAGTGCTTCTGATATTGTCCTTACTGAACCTGGTCTTAGTGTCATCATTAGTGCTGTTTTGACCAGTCGAGCAATCTTTCAAAGGATGAAAAATTACACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCTCTGATCTGGAAGTTTGACTTTCCGCCTTTCATGGTGCTTATCATTGCAATTCTTAATGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACGATATCGAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGCTGGAAACTGGCTGAGATTTTTACTACTGGAGTTGTTCTTGGTGGCTACTTGGCAATGATGACGGTCATTTTCTTTTGGGCCGCATACAAAACAAATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATATTTGGGGTATCAACACTTGAGAAAACAGCAACTGAT---TTTAGGAAGCTCGCCCTCTGCGATATACCTTCAAGTAAACACTATCAGTCAGGCCCTGATATTCGTTACAAGATCTCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703859" ref_strand="+" ref_description="SGN-E703859 [FA22CF09]">
      <seq>aggaaaagaaacagggcgtcgtctgggaatgggaaccaacatgtatccttcatctgctctgttggggcagactaaggatgaatcaattgcttctttaccaattgatgaactgatagaaaaggctgatggttttgctggagtattccctgagcacaaatatgagattgtaaaacgcttgcaagctaggaagcatatctgtggaatgactggagatggagtcaatgacgctcctgctttaaagaaggctgatattgggatagctgttgatgatgccactgatgctgctcgtagtgcttctgacattgttcttactgaacctggtctcagtgtcatcattagtgctgttctgactagtcgagcaatctttcaaaggatgaaaaactatacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggcccttatctggaagtttgactttccacctttcatggtgcttatcattgcaatcctcaatgacggtaccattatgacaatatcaaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacagtcattttcttttgggcagcatatgagacagatttcttcccgcgtgtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31467" stop="28649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31167" g_stop="31019" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31018" i_stop="30907" i_length="112">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30906" g_stop="30668" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="388" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30667" i_stop="30482" i_length="186">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30481" g_stop="30449" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="421" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30448" i_stop="30359" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30358" g_stop="30277" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="503" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30276" i_stop="29696" i_length="581">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29695" g_stop="29535" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="664" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29534" i_stop="29063" i_length="472">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29062" g_stop="28949" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="778" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E703859" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31167" e_stop="31019"/>
          <exon e_start="30906" e_stop="30668"/>
          <exon e_start="30481" e_stop="30449"/>
          <exon e_start="30358" e_stop="30277"/>
          <exon e_start="29695" e_stop="29535"/>
          <exon e_start="29062" e_stop="28949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACA</genome_strand>
        <mrna_strand>AGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTG................................................................................................................AGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739874" ref_strand="+" ref_description="SGN-E739874 [LC19AG10]">
      <seq>ccatggcaattcattggtctcctgcctttgtttgatcctccaagacacgacagtgctgagactataaggagggctttgaatcttggagtgaatgttaaaatgatcacaggggatcaactggctataggaaaagaaacagggcgtcgtctgggaatgggaaccaacatgtatccttcatctgctctgttggggcagactaaggatgaatcaattgcttctttaccaattgatgaactgatagaaaaggctgatggttttgctggagtattccctgagcacaaatatgagattgtaaaacgcttgcaagctaggaagcatatctgtggaatgactggagatggagtcaatgacgctcctgctttaaagaaggctgatattgggatagctgttgatgatgccactgatgctgctcgtagtgcttctgacattgttcttactgaacctggtctcagtgtcatcattagtgctgttctgactagtcgagcaatctttcaaaggatgaaaaactatacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggcccttatctggaagtttgactttccacctttcatggtgcttatcattgcaatcctcaatgacggtaccattatgacaatatcaaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacagtcattttcttttgggcagcatatgagacagatttcttcccgcgtgtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32210" stop="28650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31910" g_stop="31802" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31801" i_stop="31184" i_length="618">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31183" g_stop="31019" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="274" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31018" i_stop="30907" i_length="112">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30906" g_stop="30668" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="513" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30667" i_stop="30482" i_length="186">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30481" g_stop="30449" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="546" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30448" i_stop="30359" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30358" g_stop="30277" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="628" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30276" i_stop="29696" i_length="581">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29695" g_stop="29535" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="789" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29534" i_stop="29063" i_length="472">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29062" g_stop="28950" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="790" r_stop="902" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E739874" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31910" e_stop="31802"/>
          <exon e_start="31183" e_stop="31019"/>
          <exon e_start="30906" e_stop="30668"/>
          <exon e_start="30481" e_stop="30449"/>
          <exon e_start="30358" e_stop="30277"/>
          <exon e_start="29695" e_stop="29535"/>
          <exon e_start="29062" e_stop="28950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAGGTATTTCTAATTTTTTCATTTTTTATGATCAATATATTGAAAAATTGTTGGCAAATAGACTGCATGCTATATTGGCAACTTGGTAGTAATGGCTACCCAACCCCTTAATAAAAGGAAGAGAGAAAGGAAAAATGTATCCAGTGAGTAGAGGTTTCCAAAATTATCACCAACTTGAGATGGTAATGCAGTCTGCTAGTAATTCTTTGTACACTGAGCTTGTTGGCTGTTGCATCAAAGACTACTTTTGATTCGTTCCGATATTGGGACTGTGCCTTTTTGTTTTTGATTTTTGGTGAGGACAATATTATAGTGGTACTGGGTTATGTCTCATTTTAGAGGCACCGCCTGGTCTTATTGACTTAAAGTGATGTCTCTGCCCGTCGCTTGGCATTTTCATTTATTGTGTTGATAAGGATTTCAGGCTTTCACAATTGAATTTTAAATACTATTACTTTGTGTTTGTCAACTTGTGTTTTACCAAGATATTGCTTTTTGATGTAAAAAGCTCAGATGTAATTTGGACATGTATCATCTTACTGGTACTGCGTCTTTTGCTACATCAAAGTTCGACATGTTTATGTGCCTGCTTAAATTTCTTGATGTCTGTTCTTTTGGCAGGGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCAC</genome_strand>
        <mrna_strand>CCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTG................................................................................................................AGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701502" ref_strand="+" ref_description="SGN-E701502 [FA16AF05]">
      <seq>acaatgatcacaggggatcaactggctataggaaaagaaacagggcgtcgtctgggaatgggaaccaacatgtatccttcatctgctctgttggggcagactaaggatgaatcaattgcttctttaccaattgatgaactgatagaaaaggctgatggttttgctggagtattccctgagcacaaatatgagattgtaaaacgcttgcaagctaggaagcatatctgtggaatgactggagatggagtcaatgacgctcctgctttaaagaaggctgatattgggatagctgttgatgatgccactgatgctgctcgtagtgcttctgacattgttcttactgaacctggtctcagtgtcatcattagtgctgttctgactagtcgagcaatctttcaaaggatgaaaaactatacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggcccttatctggaagtttgactttccacctttcatggtgcttatcattgcaatcctcaatgacggtaccattatgacaatatcaaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacagtcattttcttttgggcagcatatgagacagatttcttcccgcgtgtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcaacaatttaccttcaagtgagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31486" stop="28677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31393" g_stop="31381" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="0.692"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31380" i_stop="31184" i_length="197">
            <donor d_prob="0.160" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31183" g_stop="31019" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="178" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31018" i_stop="30907" i_length="112">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30906" g_stop="30668" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="417" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30667" i_stop="30482" i_length="186">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30481" g_stop="30449" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="450" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30448" i_stop="30359" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30358" g_stop="30277" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="532" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30276" i_stop="29696" i_length="581">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29695" g_stop="29535" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="693" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29534" i_stop="29063" i_length="472">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29062" g_stop="28977" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="779" r_length="86" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E701502" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31393" e_stop="31381"/>
          <exon e_start="31183" e_stop="31019"/>
          <exon e_start="30906" e_stop="30668"/>
          <exon e_start="30481" e_stop="30449"/>
          <exon e_start="30358" e_stop="30277"/>
          <exon e_start="29695" e_stop="29535"/>
          <exon e_start="29062" e_stop="28977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAGGATTTCAGGCTTTCACAATTGAATTTTAAATACTATTACTTTGTGTTTGTCAACTTGTGTTTTACCAAGATATTGCTTTTTGATGTAAAAAGCTCAGATGTAATTTGGACATGTATCATCTTACTGGTACTGCGTCTTTTGCTACATCAAAGTTCGACATGTTTATGTGCCTGCTTAAATTTCTTGATGTCTGTTCTTTTGGCAGGGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCAC</genome_strand>
        <mrna_strand>ACAATGATCACAG.....................................................................................................................................................................................................GGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTG................................................................................................................AGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAACAATTTACCTTCAAGTGAGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336532" ref_strand="+" ref_description="SGN-E336532 [cTOE-4-N20]">
      <seq>tggagatggagtcaatgacgctcctgctttaaagaaggctgatattgggatagctgttgatgatgccactgatgctgctcgtagtgcttctgacattgttcttactgaacctggtctcagtgtcatcattagtgctgttctgactagtcgagcaatctttcaaaggatgaaaaactatacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggcccttatctggaagtttgactttccacctttcatggtgcttatcattgcaatcctcaatgacggtaccattatgacaatatcaaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacagtcattttcttttgggcagcatatgagacagatttcttcccgcgtgtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31148" stop="28687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30848" g_stop="30668" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30667" i_stop="30482" i_length="186">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30481" g_stop="30449" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="214" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30448" i_stop="30359" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30358" g_stop="30277" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="296" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30276" i_stop="29696" i_length="581">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29695" g_stop="29535" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="457" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29534" i_stop="29063" i_length="472">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29062" g_stop="28987" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="533" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E336532" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30848" e_stop="30668"/>
          <exon e_start="30481" e_stop="30449"/>
          <exon e_start="30358" e_stop="30277"/>
          <exon e_start="29695" e_stop="29535"/>
          <exon e_start="29062" e_stop="28987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTC</genome_strand>
        <mrna_strand>TGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735855" ref_strand="+" ref_description="SGN-E735855 [LC03BF03]">
      <seq>cgccttggcaattcattggtctcctgcctttgtttgatcctccaagacacgacagtgctgagactataaggagggctttgaatcttggagtgaatgttaaaatgatcacaggggatcaactggctataggaaaagaaacagggcgtcgtctgggaatgggaaccaacatgtatccttcatctgctctgttggggcagactaaggatgaatcaattgcttctttaccaattgatgaactgatagaaaaggctgatggttttgctggagtattccctgagcacaaatatgagattgtaaaacgcttgcaagctaggaagcatatctgtggaatgactggagatggagtcaatgacgctcctgctttaaagaaggctgatattgggatagctgttgatgatgccactgatgctgctcgtagtgcttctgacattgttcttactgaacctggtctcagtgtcatcattagtgctgttctgactagtcgagcaatctttcaaaggatgaaaaactatacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggcccttatctggaagtttgactttccacctttcatggtgcttatcattgcaatcctcaatgacggtaccattatgacaatatcaaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgaaagtcattttcttttgggcagcatatgaaaaacatttcttcccgcgtgtatttggggtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32210" stop="28746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31912" g_stop="31802" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31801" i_stop="31184" i_length="618">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31183" g_stop="31019" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="276" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31018" i_stop="30907" i_length="112">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30906" g_stop="30668" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="515" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30667" i_stop="30482" i_length="186">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30481" g_stop="30449" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="548" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30448" i_stop="30359" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30358" g_stop="30277" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="630" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30276" i_stop="29696" i_length="581">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29695" g_stop="29535" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="791" r_length="161" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29534" i_stop="29063" i_length="472">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29062" g_stop="29046" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="792" r_stop="808" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E735855" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31912" e_stop="31802"/>
          <exon e_start="31183" e_stop="31019"/>
          <exon e_start="30906" e_stop="30668"/>
          <exon e_start="30481" e_stop="30449"/>
          <exon e_start="30358" e_stop="30277"/>
          <exon e_start="29695" e_stop="29535"/>
          <exon e_start="29062" e_stop="29046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAGGTATTTCTAATTTTTTCATTTTTTATGATCAATATATTGAAAAATTGTTGGCAAATAGACTGCATGCTATATTGGCAACTTGGTAGTAATGGCTACCCAACCCCTTAATAAAAGGAAGAGAGAAAGGAAAAATGTATCCAGTGAGTAGAGGTTTCCAAAATTATCACCAACTTGAGATGGTAATGCAGTCTGCTAGTAATTCTTTGTACACTGAGCTTGTTGGCTGTTGCATCAAAGACTACTTTTGATTCGTTCCGATATTGGGACTGTGCCTTTTTGTTTTTGATTTTTGGTGAGGACAATATTATAGTGGTACTGGGTTATGTCTCATTTTAGAGGCACCGCCTGGTCTTATTGACTTAAAGTGATGTCTCTGCCCGTCGCTTGGCATTTTCATTTATTGTGTTGATAAGGATTTCAGGCTTTCACAATTGAATTTTAAATACTATTACTTTGTGTTTGTCAACTTGTGTTTTACCAAGATATTGCTTTTTGATGTAAAAAGCTCAGATGTAATTTGGACATGTATCATCTTACTGGTACTGCGTCTTTTGCTACATCAAAGTTCGACATGTTTATGTGCCTGCTTAAATTTCTTGATGTCTGTTCTTTTGGCAGGGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATC</genome_strand>
        <mrna_strand>CGCCTTGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTG................................................................................................................AGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGAAAGTCATTTTCTTTTGGGCAGCATATGAAAAACATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTTGGGGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261526" ref_strand="+" ref_description="SGN-E261526 [cLEG-57-G4]">
      <seq>gctggagtattccctgagcacaaatatgagattgtaaaacgcttgcaagctaggaagcatatctgtggaatgactggagatggagtcaatgacgctcctgctttaaagaaggctgatattgggatagctgttgatgatgccactgatgctgctcgtagtgcttctgacattgttcttactgaacctggtctcagtgtcatcattagtgctgttctgactagtcgagcaatctttcaaaggatgaaaaactatacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggcccttatctggaagtttgactttccacctttcatggtgcttatcattgcaatcctcaatgacggtaccattatgacaatattcaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacagtcattttcttttgggcagcatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31334" stop="29252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31034" g_stop="31019" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31018" i_stop="30907" i_length="112">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30906" g_stop="30668" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="255" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30667" i_stop="30482" i_length="186">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30481" g_stop="30449" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="288" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30448" i_stop="30359" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30358" g_stop="30277" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="370" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30276" i_stop="29696" i_length="581">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29695" g_stop="29552" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="514" r_length="144" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E261526" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31034" e_stop="31019"/>
          <exon e_start="30906" e_stop="30668"/>
          <exon e_start="30481" e_stop="30449"/>
          <exon e_start="30358" e_stop="30277"/>
          <exon e_start="29695" e_stop="29552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATG</genome_strand>
        <mrna_strand>GCTGGAGTATTCCCTG................................................................................................................AGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATTCAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721342" ref_strand="+" ref_description="SGN-E721342 [FC13CB10]">
      <seq>aagtttgctgagaggggtttgcgctcacttggtgtggcctaccaggaagttccagagggaaggaaggagagttccggaggaccatggcaattcattggtctcctgcctttgtttgatcctccaagacacgacagtgctgagactataaggagggctttgaatcttggagtgaatgttaaaatgatcacaggggatcaactggctataggaaaagaaacagggcgtcgtctgggaatgggaaccaacatgtatccttcatctgctctgttggggcagactaaggatgaatcaattgcttctttaccaattgatgaactgatagaaaaggctgatggttttgctggagtattccctgagcacaaatatgagattgtaaaacgcttgcaagctaggaagcatatctgtggaatgactggagatggagtcaatgacgctcctgctttaaagaaggctgatattgggatagctgttgatgatgccactgatgctgctcgtagtgcttctgacattgttcttactgaacctggtctcagtgtcatcattagtgctgttctgactagtcgagcaatctttcaaaggatgaaaaactatacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggcccttatctggaagtttgactttccacctttcatggtgcttatcattgcaatcctcaatgacggtaccattatgacaatatcaaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32497" stop="29301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32197" g_stop="32153" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32152" i_stop="31947" i_length="206">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31946" g_stop="31802" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="190" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31801" i_stop="31184" i_length="618">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31183" g_stop="31019" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="355" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31018" i_stop="30907" i_length="112">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30906" g_stop="30668" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="594" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30667" i_stop="30482" i_length="186">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30481" g_stop="30449" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="627" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30448" i_stop="30359" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30358" g_stop="30277" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="709" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30276" i_stop="29696" i_length="581">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29695" g_stop="29601" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="804" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E721342" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32197" e_stop="32153"/>
          <exon e_start="31946" e_stop="31802"/>
          <exon e_start="31183" e_stop="31019"/>
          <exon e_start="30906" e_stop="30668"/>
          <exon e_start="30481" e_stop="30449"/>
          <exon e_start="30358" e_stop="30277"/>
          <exon e_start="29695" e_stop="29601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAGGTATTTTGCTTTCCTTTTATCATCTGTGGAACTCATCATGTCATATATAAATTGAAAGAATCAATTATCTTGCAGCTTAAGCATATAACCTATACTATTATAGTGGAGAGGAGGGATTAATTATCTCTGTCTCCAAGTTCTATCATTGTGTCGAAAAAATAGAGCTTTATTTCGCTTAATCACATATACCCTAACTTCCCATGCAGGAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAGGTATTTCTAATTTTTTCATTTTTTATGATCAATATATTGAAAAATTGTTGGCAAATAGACTGCATGCTATATTGGCAACTTGGTAGTAATGGCTACCCAACCCCTTAATAAAAGGAAGAGAGAAAGGAAAAATGTATCCAGTGAGTAGAGGTTTCCAAAATTATCACCAACTTGAGATGGTAATGCAGTCTGCTAGTAATTCTTTGTACACTGAGCTTGTTGGCTGTTGCATCAAAGACTACTTTTGATTCGTTCCGATATTGGGACTGTGCCTTTTTGTTTTTGATTTTTGGTGAGGACAATATTATAGTGGTACTGGGTTATGTCTCATTTTAGAGGCACCGCCTGGTCTTATTGACTTAAAGTGATGTCTCTGCCCGTCGCTTGGCATTTTCATTTATTGTGTTGATAAGGATTTCAGGCTTTCACAATTGAATTTTAAATACTATTACTTTGTGTTTGTCAACTTGTGTTTTACCAAGATATTGCTTTTTGATGTAAAAAGCTCAGATGTAATTTGGACATGTATCATCTTACTGGTACTGCGTCTTTTGCTACATCAAAGTTCGACATGTTTATGTGCCTGCTTAAATTTCTTGATGTCTGTTCTTTTGGCAGGGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTT</genome_strand>
        <mrna_strand>AAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAG..............................................................................................................................................................................................................GAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTG................................................................................................................AGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312687" ref_strand="+" ref_description="SGN-E312687 [cTOA-8-A21]">
      <seq>aatcttggagtgaatgttaaaatgatcacaggggatcggactggctataggaaaagaaacagggcgtcgtctgggaatgggaaccaacatgtatccttcatctgctctgttggggcagactaaggatgaatcaattgcttctttaccaattgatgaactgatagaaaaggctgatggttttgctggagtattccctgagcacaaatatgagattgtaaaacgcttgcaagctaggaagcatatctgtggaatgactggagatggagtcaatgacgctcctgctttaaagaaggctgatattgggatagctgttgatgatgccactgatgctgctcgtagtgcttctgacattgttcttactgaacctggtctcagtgtcatcattagtgctgttctgactagtcgagcaatctttcaaaggatgaaaaactatacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggcccttatctggaagtttgactttccacctttcatggggcttatcattgcaatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32132" stop="29985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31832" g_stop="31802" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31801" i_stop="31184" i_length="618">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31183" g_stop="31019" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="197" r_length="166" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31018" i_stop="30907" i_length="112">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30906" g_stop="30668" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="436" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30667" i_stop="30482" i_length="186">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30481" g_stop="30449" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="469" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30448" i_stop="30359" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30358" g_stop="30285" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="543" r_length="74" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E312687" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31832" e_stop="31802"/>
          <exon e_start="31183" e_stop="31019"/>
          <exon e_start="30906" e_stop="30668"/>
          <exon e_start="30481" e_stop="30449"/>
          <exon e_start="30358" e_stop="30285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTGGAGTGAATGTTAAAATGATCACAGGTATTTCTAATTTTTTCATTTTTTATGATCAATATATTGAAAAATTGTTGGCAAATAGACTGCATGCTATATTGGCAACTTGGTAGTAATGGCTACCCAACCCCTTAATAAAAGGAAGAGAGAAAGGAAAAATGTATCCAGTGAGTAGAGGTTTCCAAAATTATCACCAACTTGAGATGGTAATGCAGTCTGCTAGTAATTCTTTGTACACTGAGCTTGTTGGCTGTTGCATCAAAGACTACTTTTGATTCGTTCCGATATTGGGACTGTGCCTTTTTGTTTTTGATTTTTGGTGAGGACAATATTATAGTGGTACTGGGTTATGTCTCATTTTAGAGGCACCGCCTGGTCTTATTGACTTAAAGTGATGTCTCTGCCCGTCGCTTGGCATTTTCATTTATTGTGTTGATAAGGATTTCAGGCTTTCACAATTGAATTTTAAATACTATTACTTTGTGTTTGTCAACTTGTGTTTTACCAAGATATTGCTTTTTGATGTAAAAAGCTCAGATGTAATTTGGACATGTATCATCTTACTGGTACTGCGTCTTTTGCTACATCAAAGTTCGACATGTTTATGTGCCTGCTTAAATTTCTTGATGTCTGTTCTTTTGGCAGGGGATC-AACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCT</genome_strand>
        <mrna_strand>AATCTTGGAGTGAATGTTAAAATGATCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATCGGACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTG................................................................................................................AGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGGGCTTATCATTGCAATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738835" ref_strand="+" ref_description="SGN-E738835 [LC15AE09]">
      <seq>ctgctattgttgggatgttgtctgacccgaaggaggctcgtgctggcattcgtgaaatacactttcttcctttcaatccaactgacaagcgtacagcgcttacttatcttgatggtgaaggaaaaatgcacagggtcagcaaaggggcaccagagcagatcctaaatcttgcacacaacaagtcagacatagaacgtagagttcatgcggtgattgataagtttgctgagaggggtttgcgctcacttggtgtggcctaccaggaagttccagagggaaggaaggagagttccggaggaccatggcaattcattggtctcctgcctttgtttgatcctccaagacacgacagtgctgagactataaggagggctttgaatcttggagtgaatgttaaaatgatcacaggggatcaactggctataggaaaagaaacagggcgtcgtctgggaatgggaaccaacatgtatccttcatctgctctgttggggcagactaaggatgaatcaattgcttctttaccaattgatgaactgatagaaaaggctgatggttttgctggagtattccctgagcacaaatatgagattgtaaaacgcttgcaagctaggaagcatatctgtggaatgactggagatggagtcaatgacgctcctgctttaaagaaggctgatattgggatagctgttgatgatgccactgatgctgctcgtagtgcttctgacattgttcttactgaacctggtctcagtgtcatcattagtgctgttctgactagtcgagcaaatcttcaaaggatgaaaaactatacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggcccttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32885" stop="30032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32585" g_stop="32551" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32550" i_stop="32471" i_length="80">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32470" g_stop="32348" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="158" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32347" i_stop="32258" i_length="90">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32257" g_stop="32153" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="263" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32152" i_stop="31947" i_length="206">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31946" g_stop="31802" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="408" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31801" i_stop="31184" i_length="618">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31183" g_stop="31019" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="573" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31018" i_stop="30907" i_length="112">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30906" g_stop="30668" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="812" r_length="239" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30667" i_stop="30482" i_length="186">
            <donor d_prob="0.848" d_score="0.94"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30481" g_stop="30449" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="813" r_stop="845" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="30448" i_stop="30359" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="30358" g_stop="30332" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="846" r_stop="872" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E738835" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32585" e_stop="32551"/>
          <exon e_start="32470" e_stop="32348"/>
          <exon e_start="32257" e_stop="32153"/>
          <exon e_start="31946" e_stop="31802"/>
          <exon e_start="31183" e_stop="31019"/>
          <exon e_start="30906" e_stop="30668"/>
          <exon e_start="30481" e_stop="30449"/>
          <exon e_start="30358" e_stop="30332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAGGTAACTTTAGAATTGCATGACTGTGTGATTGGTGTATCCATTTTAGCTAGAGAACTGTTCTAATGCTGCCATTAATGCAGGCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAGGTATGACTGTGATCATCTAAGTAGTCCTTCTTTGCTTGCTTTTACTTTCCGTGATTGCATTTTCTAACCAATCACTGCAATTTGGATTAGATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAGGTATTTTGCTTTCCTTTTATCATCTGTGGAACTCATCATGTCATATATAAATTGAAAGAATCAATTATCTTGCAGCTTAAGCATATAACCTATACTATTATAGTGGAGAGGAGGGATTAATTATCTCTGTCTCCAAGTTCTATCATTGTGTCGAAAAAATAGAGCTTTATTTCGCTTAATCACATATACCCTAACTTCCCATGCAGGAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAGGTATTTCTAATTTTTTCATTTTTTATGATCAATATATTGAAAAATTGTTGGCAAATAGACTGCATGCTATATTGGCAACTTGGTAGTAATGGCTACCCAACCCCTTAATAAAAGGAAGAGAGAAAGGAAAAATGTATCCAGTGAGTAGAGGTTTCCAAAATTATCACCAACTTGAGATGGTAATGCAGTCTGCTAGTAATTCTTTGTACACTGAGCTTGTTGGCTGTTGCATCAAAGACTACTTTTGATTCGTTCCGATATTGGGACTGTGCCTTTTTGTTTTTGATTTTTGGTGAGGACAATATTATAGTGGTACTGGGTTATGTCTCATTTTAGAGGCACCGCCTGGTCTTATTGACTTAAAGTGATGTCTCTGCCCGTCGCTTGGCATTTTCATTTATTGTGTTGATAAGGATTTCAGGCTTTCACAATTGAATTTTAAATACTATTACTTTGTGTTTGTCAACTTGTGTTTTACCAAGATATTGCTTTTTGATGTAAAAAGCTCAGATGTAATTTGGACATGTATCATCTTACTGGTACTGCGTCTTTTGCTACATCAAAGTTCGACATGTTTATGTGCCTGCTTAAATTTCTTGATGTCTGTTCTTTTGGCAGGGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATC</genome_strand>
        <mrna_strand>CTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAG................................................................................GCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAG..........................................................................................ATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAG..............................................................................................................................................................................................................GAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTG................................................................................................................AGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAAATCTTCAAAGGATGAAAAACTATACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCCCTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737668" ref_strand="+" ref_description="SGN-E737668 [LC10DB10]">
      <seq>atctcatcggctcgctcaacagggtgctattacgaaaagaatgacagctattgaggagatggctggtatggacgtgctttgtagtgacaagacagggacccttacactaaacaagcttactgttgacaaaaaccttgttgaggtttttgccaaaggtgttgacgcagatactgtcgttctgatggcagctcgagcgtctcgtacagagaaccaggatgccattgacactgctattgttgggatgttgtctgacccgaaggaggctcgtgctggcattcgtgaaatacactttcttcctttcaatccaactgacaagcgtacagcgcttacttatcttgatggtgaaggaaaaatgcacagggtcagcaaaggggcaccagagcagatcctaaatcttgcacacaacaagtcagacatagaacgtagagttcatgcggtgattgataagtttgctgagaggggtttgcgctcacttggtgtggcctaccaggaagttccagagggaaggaaggagagttccggaggaccatggcaattcattggtctcctgcctttgtttgatcctccaagacacgacagtgctgagactataaggagggctttgaatcttggagtgaatgttaaaatgatcacaggggatcaactggctataggaaaagaaacagggcgtcgtctgggaatgggaaccaacatgtatccttcatctgctctgttggggcagactaaggatgaatcaattgcttctttaccaattgatgaactgatagaaaaggctgatggttttgctggagtattccctgagcacaaatatgagattgtaaaacgcttgcaagctaggaagcatatctgtggaatgactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33314" stop="30546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33014" g_stop="32993" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32992" i_stop="32874" i_length="119">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32873" g_stop="32754" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="142" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32753" i_stop="32671" i_length="83">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32670" g_stop="32551" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="262" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32550" i_stop="32471" i_length="80">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32470" g_stop="32348" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="385" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32347" i_stop="32258" i_length="90">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32257" g_stop="32153" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="490" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32152" i_stop="31947" i_length="206">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31946" g_stop="31802" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="635" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="31801" i_stop="31184" i_length="618">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31183" g_stop="31019" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="800" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="31018" i_stop="30907" i_length="112">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="30906" g_stop="30846" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="801" r_stop="861" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E737668" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33014" e_stop="32993"/>
          <exon e_start="32873" e_stop="32754"/>
          <exon e_start="32670" e_stop="32551"/>
          <exon e_start="32470" e_stop="32348"/>
          <exon e_start="32257" e_stop="32153"/>
          <exon e_start="31946" e_stop="31802"/>
          <exon e_start="31183" e_stop="31019"/>
          <exon e_start="30906" e_stop="30846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCATCGGCTCGCTCAACAGGTTTGTTAGTTAGCATCTTGATCTTAGGATGTGGTGTTTCAGCATGTCTTCAATCGTGAGTTATTGTAGTTCAACAGTTCTGATAAGCGATTGCATATTTCATCATTTTAACTATTCAGGGTGCTATTACGAAAAGAATGACAGCTATTGAGGAGATGGCTGGTATGGACGTGCTTTGTAGTGACAAGACAGGGACCCTTACACTAAACAAGCTTACTGTTGACAAAAACCTTGTTGAGGTGAGAATAAGAGTTCAGTCTTGTGTTTATTCCTTATTCCACACCGATTCTGATTTTCTTGTTTGTTCCTGCTAAATTATCAGGTTTTTGCCAAAGGTGTTGACGCAGATACTGTCGTTCTGATGGCAGCTCGAGCGTCTCGTACAGAGAACCAGGATGCCATTGACACTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAGGTAACTTTAGAATTGCATGACTGTGTGATTGGTGTATCCATTTTAGCTAGAGAACTGTTCTAATGCTGCCATTAATGCAGGCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAGGTATGACTGTGATCATCTAAGTAGTCCTTCTTTGCTTGCTTTTACTTTCCGTGATTGCATTTTCTAACCAATCACTGCAATTTGGATTAGATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAGGTATTTTGCTTTCCTTTTATCATCTGTGGAACTCATCATGTCATATATAAATTGAAAGAATCAATTATCTTGCAGCTTAAGCATATAACCTATACTATTATAGTGGAGAGGAGGGATTAATTATCTCTGTCTCCAAGTTCTATCATTGTGTCGAAAAAATAGAGCTTTATTTCGCTTAATCACATATACCCTAACTTCCCATGCAGGAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAGGTATTTCTAATTTTTTCATTTTTTATGATCAATATATTGAAAAATTGTTGGCAAATAGACTGCATGCTATATTGGCAACTTGGTAGTAATGGCTACCCAACCCCTTAATAAAAGGAAGAGAGAAAGGAAAAATGTATCCAGTGAGTAGAGGTTTCCAAAATTATCACCAACTTGAGATGGTAATGCAGTCTGCTAGTAATTCTTTGTACACTGAGCTTGTTGGCTGTTGCATCAAAGACTACTTTTGATTCGTTCCGATATTGGGACTGTGCCTTTTTGTTTTTGATTTTTGGTGAGGACAATATTATAGTGGTACTGGGTTATGTCTCATTTTAGAGGCACCGCCTGGTCTTATTGACTTAAAGTGATGTCTCTGCCCGTCGCTTGGCATTTTCATTTATTGTGTTGATAAGGATTTCAGGCTTTCACAATTGAATTTTAAATACTATTACTTTGTGTTTGTCAACTTGTGTTTTACCAAGATATTGCTTTTTGATGTAAAAAGCTCAGATGTAATTTGGACATGTATCATCTTACTGGTACTGCGTCTTTTGCTACATCAAAGTTCGACATGTTTATGTGCCTGCTTAAATTTCTTGATGTCTGTTCTTTTGGCAGGGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGG</genome_strand>
        <mrna_strand>ATCTCATCGGCTCGCTCAACAG.......................................................................................................................GGTGCTATTACGAAAAGAATGACAGCTATTGAGGAGATGGCTGGTATGGACGTGCTTTGTAGTGACAAGACAGGGACCCTTACACTAAACAAGCTTACTGTTGACAAAAACCTTGTTGAG...................................................................................GTTTTTGCCAAAGGTGTTGACGCAGATACTGTCGTTCTGATGGCAGCTCGAGCGTCTCGTACAGAGAACCAGGATGCCATTGACACTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAG................................................................................GCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAG..........................................................................................ATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAG..............................................................................................................................................................................................................GAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTG................................................................................................................AGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334130" ref_strand="+" ref_description="SGN-E334130 [cTOD-21-M5]">
      <seq>ttgacgcagatactgtcgttctgatggcagctcgagcgtctcgtacagagaaccaggatgccattgacactgctattgttgggatgttgtctgacccgaaggaggctcgtgctggcattcgtgaaatacactttcttcctttcaatccaactgacaagcgtacagcgcttacttatcttgatggtgaaggaaaaatgcacagggtcagcaaaggggcaccagagcagatcctaaatcttgcacacaacaagtcagacatagaacgtagagttcatgcggtgattgataagtttgctgagaggggtttgcgctcacttggtgtggcctaccaggaagttccagagggaaggaaggagagttccggaggaccatggcaattcattggtctcctgcctttgtttgatcctccaagacacgacagtgctgagactataaggagggctttgaatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32954" stop="31526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32654" g_stop="32551" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32550" i_stop="32471" i_length="80">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32470" g_stop="32348" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="227" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32347" i_stop="32258" i_length="90">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32257" g_stop="32153" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="332" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32152" i_stop="31947" i_length="206">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31946" g_stop="31826" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="453" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E334130" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32654" e_stop="32551"/>
          <exon e_start="32470" e_stop="32348"/>
          <exon e_start="32257" e_stop="32153"/>
          <exon e_start="31946" e_stop="31826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACGCAGATACTGTCGTTCTGATGGCAGCTCGAGCGTCTCGTACAGAGAACCAGGATGCCATTGACACTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAGGTAACTTTAGAATTGCATGACTGTGTGATTGGTGTATCCATTTTAGCTAGAGAACTGTTCTAATGCTGCCATTAATGCAGGCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAGGTATGACTGTGATCATCTAAGTAGTCCTTCTTTGCTTGCTTTTACTTTCCGTGATTGCATTTTCTAACCAATCACTGCAATTTGGATTAGATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAGGTATTTTGCTTTCCTTTTATCATCTGTGGAACTCATCATGTCATATATAAATTGAAAGAATCAATTATCTTGCAGCTTAAGCATATAACCTATACTATTATAGTGGAGAGGAGGGATTAATTATCTCTGTCTCCAAGTTCTATCATTGTGTCGAAAAAATAGAGCTTTATTTCGCTTAATCACATATACCCTAACTTCCCATGCAGGAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTG</genome_strand>
        <mrna_strand>TTGACGCAGATACTGTCGTTCTGATGGCAGCTCGAGCGTCTCGTACAGAGAACCAGGATGCCATTGACACTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAG................................................................................GCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAG..........................................................................................ATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAG..............................................................................................................................................................................................................GAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202104" ref_strand="+" ref_description="SGN-E202104 [cLEC-7-I5]">
      <seq>tgacagctattgaggagatggctggtatggacgtgctttgtagtgacaagacagggacccttacactaaacaagcttactgttgacaaaaaccttgttgaggtttttgccaaaggtgttgacgcagatactgtcgttctgatggcagctcgagcgtctcgtacagagaaccaggatgccattgacactgctattgttgggatgttgtctgacccgaaggaggctcgtgctggcattcgtgaaatacactttcttcctttcaatccaactgacaagcgtacagcgcttacttatcttgatggtgaaggaaaaatgcacagggtcagcaaaggggcaccagagcagatcctaaatcttgcacacaacaagtcagacatagaacgtagagttcatgcggtgattgataagtttgctgagaggggtttgcgctcacttggtgtggcctaccaggaagttccagagggaaggaaggagagttccggaggaccatggcaattcattggtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33154" stop="31590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32854" g_stop="32754" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32753" i_stop="32671" i_length="83">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32670" g_stop="32551" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="221" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32550" i_stop="32471" i_length="80">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32470" g_stop="32348" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="344" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32347" i_stop="32258" i_length="90">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32257" g_stop="32153" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="449" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32152" i_stop="31947" i_length="206">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31946" g_stop="31890" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="506" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E202104" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32854" e_stop="32754"/>
          <exon e_start="32670" e_stop="32551"/>
          <exon e_start="32470" e_stop="32348"/>
          <exon e_start="32257" e_stop="32153"/>
          <exon e_start="31946" e_stop="31890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAGCTATTGAGGAGATGGCTGGTATGGACGTGCTTTGTAGTGACAAGACAGGGACCCTTACACTAAACAAGCTTACTGTTGACAAAAACCTTGTTGAGGTGAGAATAAGAGTTCAGTCTTGTGTTTATTCCTTATTCCACACCGATTCTGATTTTCTTGTTTGTTCCTGCTAAATTATCAGGTTTTTGCCAAAGGTGTTGACGCAGATACTGTCGTTCTGATGGCAGCTCGAGCGTCTCGTACAGAGAACCAGGATGCCATTGACACTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAGGTAACTTTAGAATTGCATGACTGTGTGATTGGTGTATCCATTTTAGCTAGAGAACTGTTCTAATGCTGCCATTAATGCAGGCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAGGTATGACTGTGATCATCTAAGTAGTCCTTCTTTGCTTGCTTTTACTTTCCGTGATTGCATTTTCTAACCAATCACTGCAATTTGGATTAGATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAGGTATTTTGCTTTCCTTTTATCATCTGTGGAACTCATCATGTCATATATAAATTGAAAGAATCAATTATCTTGCAGCTTAAGCATATAACCTATACTATTATAGTGGAGAGGAGGGATTAATTATCTCTGTCTCCAAGTTCTATCATTGTGTCGAAAAAATAGAGCTTTATTTCGCTTAATCACATATACCCTAACTTCCCATGCAGGAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTC</genome_strand>
        <mrna_strand>TGACAGCTATTGAGGAGATGGCTGGTATGGACGTGCTTTGTAGTGACAAGACAGGGACCCTTACACTAAACAAGCTTACTGTTGACAAAAACCTTGTTGAG...................................................................................GTTTTTGCCAAAGGTGTTGACGCAGATACTGTCGTTCTGATGGCAGCTCGAGCGTCTCGTACAGAGAACCAGGATGCCATTGACACTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAG................................................................................GCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAG..........................................................................................ATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAG..............................................................................................................................................................................................................GAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366206" ref_strand="+" ref_description="SGN-E366206 [cLPT-1-K19]">
      <seq>gatctcatcggctcgctcaacagggtgctattacgaaaagaatgacagctattgaggagatggctggtatggacgtgctttgtagtgacaagacagggacccttacactaaacaagcttactgttgacaaaaaccttgttgaggtttttgccaaaggtgttgacgcagatactgtcgttctgatggcagctcgagcgtctcgtacagagaaccaggatgccattgacactgctatcgttgggatgttgtctgacccgaaggaggctcgtgctggcattcgtgaaatacactttcttcctttcaatccaactgacaagcgtacagcgcttacttatcttgatggtgaaggaaaaatgcacagggtcagcaaaggggctccagagcagatcctaaatcttgcacacaacaagtcagacatagaacgtagagttcatgcagtgattgataagtttgctgagaggggtttgcgctcacttggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33315" stop="31863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33015" g_stop="32993" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32992" i_stop="32874" i_length="119">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32873" g_stop="32754" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="143" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32753" i_stop="32671" i_length="83">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32670" g_stop="32551" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="263" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32550" i_stop="32471" i_length="80">
            <donor d_prob="0.893" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32470" g_stop="32348" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="386" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32347" i_stop="32258" i_length="90">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32257" g_stop="32163" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="481" r_length="95" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E366206" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33015" e_stop="32993"/>
          <exon e_start="32873" e_stop="32754"/>
          <exon e_start="32670" e_stop="32551"/>
          <exon e_start="32470" e_stop="32348"/>
          <exon e_start="32257" e_stop="32163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTCATCGGCTCGCTCAACAGGTTTGTTAGTTAGCATCTTGATCTTAGGATGTGGTGTTTCAGCATGTCTTCAATCGTGAGTTATTGTAGTTCAACAGTTCTGATAAGCGATTGCATATTTCATCATTTTAACTATTCAGGGTGCTATTACGAAAAGAATGACAGCTATTGAGGAGATGGCTGGTATGGACGTGCTTTGTAGTGACAAGACAGGGACCCTTACACTAAACAAGCTTACTGTTGACAAAAACCTTGTTGAGGTGAGAATAAGAGTTCAGTCTTGTGTTTATTCCTTATTCCACACCGATTCTGATTTTCTTGTTTGTTCCTGCTAAATTATCAGGTTTTTGCCAAAGGTGTTGACGCAGATACTGTCGTTCTGATGGCAGCTCGAGCGTCTCGTACAGAGAACCAGGATGCCATTGACACTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAGGTAACTTTAGAATTGCATGACTGTGTGATTGGTGTATCCATTTTAGCTAGAGAACTGTTCTAATGCTGCCATTAATGCAGGCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAGGTATGACTGTGATCATCTAAGTAGTCCTTCTTTGCTTGCTTTTACTTTCCGTGATTGCATTTTCTAACCAATCACTGCAATTTGGATTAGATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGT</genome_strand>
        <mrna_strand>GATCTCATCGGCTCGCTCAACAG.......................................................................................................................GGTGCTATTACGAAAAGAATGACAGCTATTGAGGAGATGGCTGGTATGGACGTGCTTTGTAGTGACAAGACAGGGACCCTTACACTAAACAAGCTTACTGTTGACAAAAACCTTGTTGAG...................................................................................GTTTTTGCCAAAGGTGTTGACGCAGATACTGTCGTTCTGATGGCAGCTCGAGCGTCTCGTACAGAGAACCAGGATGCCATTGACACTGCTATCGTTGGGATGTTGTCTGACCCGAAGGAG................................................................................GCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCTCCAGAGCAG..........................................................................................ATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCAGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333723" ref_strand="+" ref_description="SGN-E333723 [cTOD-22-O9]">
      <seq>aatgtccaaggttcttcgagatggaaaatggaatgaagaagatgctgctgttcttgttcctggggacattatcagtattaaactgggagatattattcctgcagatgctcgtcttcttgaaggtgatcccctgaaaattgaccagtctgctttgactggtgaatctcttcctgtaactaaaggtcctggagatggtgtctactctggttctacctgtaagcagggagagatagaagctgtcgtcatcgccactggggttcataccttttttgggaaggctgcacaccttgttgacagtacaaatcaagtgggacacttccaaaaggttttgactgctattggaaacttctgcatctgttctattgcagtggggatgataatagagatcattgtgatgtaccctatccaacaccgcaaatatcgccctgngattgacaatcttcttgtccttctcattggtggaattccaattgccatgccaacggttctttcagtcacgatggcaattggatctcatcggctcgctcaacagggtgctattacgaaaagaatgacagctattgangagatggctggtatggacgtgctttgtagtgancagacagggacccttacactaaacaagcttactgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34008" stop="32471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33855" g_stop="33847" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33846" i_stop="33701" i_length="146">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33700" g_stop="33566" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="145" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33565" i_stop="33476" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33475" g_stop="33296" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="325" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33295" i_stop="33200" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33199" g_stop="32993" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="532" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32992" i_stop="32874" i_length="119">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32873" g_stop="32771" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="635" r_length="103" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E333723" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33855" e_stop="33847"/>
          <exon e_start="33700" e_stop="33566"/>
          <exon e_start="33475" e_stop="33296"/>
          <exon e_start="33199" e_stop="32993"/>
          <exon e_start="32873" e_stop="32771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAG-CCAAGGTTCTAGATTCACCAACCATCATTGTTATTCAATTGCTATTAGACAGCATGTGAAAGTTGTTAACTTTCATAATTTTGATGGGAAGTATGAGGTTGAGAAACTAATGGAAAGTTGTCTTAATTGTTTGCTCTTGTGATATATGCAGGTTCTTCGAGATGGAAAATGGAATGAAGAAGATGCTGCTGTTCTTGTTCCTGGGGACATTATCAGTATTAAACTGGGAGATATTATTCCTGCAGATGCTCGTCTTCTTGAAGGTGATCCCCTGAAAATTGACCAGGTGATTAAGTTTTTACGATTTAATAAGTGGTTGCTCACTGCATTCAATATTTTGTTTAACTGTGGCACTGATATTATCTATTACTTGCAGTCTGCTTTGACTGGTGAATCTCTTCCTGTAACTAAAGGTCCTGGAGATGGTGTCTACTCTGGTTCTACCTGTAAGCAGGGAGAGATAGAAGCTGTCGTCATCGCCACTGGGGTTCATACCTTTTTTGGGAAGGCTGCACACCTTGTTGACAGTACAAATCAAGTGGGACACTTCCAAAAGGCAAGTTGAACTTGTATTGTCTTATTTGTTTTGAATATTAGTTGATAATCTCATTCTTTTAAATCTCACATTCAATGTTGTTGATGTCTCTATCAGGTTTTGACTGCTATTGGAAACTTCTGCATCTGTTCTATTGCAGTGGGGATGATAATAGAGATCATTGTGATGTACCCTATCCAACACCGCAAATATCGCCCTGGGATTGACAATCTTCTTGTCCTTCTCATTGGTGGAATTCCAATTGCCATGCCAACGGTTCTTTCAGTCACGATGGCAATTGGATCTCATCGGCTCGCTCAACAGGTTTGTTAGTTAGCATCTTGATCTTAGGATGTGGTGTTTCAGCATGTCTTCAATCGTGAGTTATTGTAGTTCAACAGTTCTGATAAGCGATTGCATATTTCATCATTTTAACTATTCAGGGTGCTATTACGAAAAGAATGACAGCTATTGAGGAGATGGCTGGTATGGACGTGCTTTGTAGTGACAAGACAGGGACCCTTACACTAAACAAGCTTACTGTTG</genome_strand>
        <mrna_strand>AATGTCCAAG..................................................................................................................................................GTTCTTCGAGATGGAAAATGGAATGAAGAAGATGCTGCTGTTCTTGTTCCTGGGGACATTATCAGTATTAAACTGGGAGATATTATTCCTGCAGATGCTCGTCTTCTTGAAGGTGATCCCCTGAAAATTGACCAG..........................................................................................TCTGCTTTGACTGGTGAATCTCTTCCTGTAACTAAAGGTCCTGGAGATGGTGTCTACTCTGGTTCTACCTGTAAGCAGGGAGAGATAGAAGCTGTCGTCATCGCCACTGGGGTTCATACCTTTTTTGGGAAGGCTGCACACCTTGTTGACAGTACAAATCAAGTGGGACACTTCCAAAAG................................................................................................GTTTTGACTGCTATTGGAAACTTCTGCATCTGTTCTATTGCAGTGGGGATGATAATAGAGATCATTGTGATGTACCCTATCCAACACCGCAAATATCGCCCTGNGATTGACAATCTTCTTGTCCTTCTCATTGGTGGAATTCCAATTGCCATGCCAACGGTTCTTTCAGTCACGATGGCAATTGGATCTCATCGGCTCGCTCAACAG.......................................................................................................................GGTGCTATTACGAAAAGAATGACAGCTATTGANGAGATGGCTGGTATGGACGTGCTTTGTAGTGANCAGACAGGGACCCTTACACTAAACAAGCTTACTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366278" ref_strand="+" ref_description="SGN-E366278 [cLPT-1-F14]">
      <seq>ctgcaaatgctcgtcttcttgaaggtgatccgctgaaaattgaccagtctgctttgactggtgaatctcttcctgtaactaaaggttctggagatggtgtctactttggttctacctgtaagcagggagagatagaaactgtcgtcatcaccactggggttcataccttttttgggaaggctgcacaccttgttgacagtacaaaccatgtgggacacttacaaaaggttttgactgctattggaaacttctgcatctgttctattgcagtggggatgatagtagatatcattgtgatgaaccctatccaacaccgcaaatatcgccctgggattgacaatcttcttggccttctcattggtggaattacaattgccatgccaaccgttctttctgtcacaatggcaattggatctcatcggctcgctcaacaaggtgctattacgaaaagaatgacagctattgacgagatggctggtatggacatgctttgtattgacaagacagggacccttacactaaacaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33912" stop="32480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33612" g_stop="33566" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33565" i_stop="33476" i_length="90">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33475" g_stop="33296" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="227" r_length="180" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33295" i_stop="33200" i_length="96">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33199" g_stop="32993" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="434" r_length="207" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32992" i_stop="32874" i_length="119">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32873" g_stop="32780" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="528" r_length="94" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E366278" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33612" e_stop="33566"/>
          <exon e_start="33475" e_stop="33296"/>
          <exon e_start="33199" e_stop="32993"/>
          <exon e_start="32873" e_stop="32780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAGATGCTCGTCTTCTTGAAGGTGATCCCCTGAAAATTGACCAGGTGATTAAGTTTTTACGATTTAATAAGTGGTTGCTCACTGCATTCAATATTTTGTTTAACTGTGGCACTGATATTATCTATTACTTGCAGTCTGCTTTGACTGGTGAATCTCTTCCTGTAACTAAAGGTCCTGGAGATGGTGTCTACTCTGGTTCTACCTGTAAGCAGGGAGAGATAGAAGCTGTCGTCATCGCCACTGGGGTTCATACCTTTTTTGGGAAGGCTGCACACCTTGTTGACAGTACAAATCAAGTGGGACACTTCCAAAAGGCAAGTTGAACTTGTATTGTCTTATTTGTTTTGAATATTAGTTGATAATCTCATTCTTTTAAATCTCACATTCAATGTTGTTGATGTCTCTATCAGGTTTTGACTGCTATTGGAAACTTCTGCATCTGTTCTATTGCAGTGGGGATGATAATAGAGATCATTGTGATGTACCCTATCCAACACCGCAAATATCGCCCTGGGATTGACAATCTTCTTGTCCTTCTCATTGGTGGAATTCCAATTGCCATGCCAACGGTTCTTTCAGTCACGATGGCAATTGGATCTCATCGGCTCGCTCAACAGGTTTGTTAGTTAGCATCTTGATCTTAGGATGTGGTGTTTCAGCATGTCTTCAATCGTGAGTTATTGTAGTTCAACAGTTCTGATAAGCGATTGCATATTTCATCATTTTAACTATTCAGGGTGCTATTACGAAAAGAATGACAGCTATTGAGGAGATGGCTGGTATGGACGTGCTTTGTAGTGACAAGACAGGGACCCTTACACTAAACAAGC</genome_strand>
        <mrna_strand>CTGCAAATGCTCGTCTTCTTGAAGGTGATCCGCTGAAAATTGACCAG..........................................................................................TCTGCTTTGACTGGTGAATCTCTTCCTGTAACTAAAGGTTCTGGAGATGGTGTCTACTTTGGTTCTACCTGTAAGCAGGGAGAGATAGAAACTGTCGTCATCACCACTGGGGTTCATACCTTTTTTGGGAAGGCTGCACACCTTGTTGACAGTACAAACCATGTGGGACACTTACAAAAG................................................................................................GTTTTGACTGCTATTGGAAACTTCTGCATCTGTTCTATTGCAGTGGGGATGATAGTAGATATCATTGTGATGAACCCTATCCAACACCGCAAATATCGCCCTGGGATTGACAATCTTCTTGGCCTTCTCATTGGTGGAATTACAATTGCCATGCCAACCGTTCTTTCTGTCACAATGGCAATTGGATCTCATCGGCTCGCTCAACAA.......................................................................................................................GGTGCTATTACGAAAAGAATGACAGCTATTGACGAGATGGCTGGTATGGACATGCTTTGTATTGACAAGACAGGGACCCTTACACTAAACAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295451" ref_strand="+" ref_description="SGN-E295451 [cLET-23-L20]">
      <seq>aaactgggagatattattcctgcagatgctcgtcttcttgaaggtgatcccctgaaaattgaccagtctgctttgactggtgaatctcttcctgtaactaaaggtcctggagatggtgtctactctggttctacctgtaagcagggagagatagaagctgtcgtcatcgccactggggttcataccttttttgggaaggctgcacaccttgttgacagtacaaatcaagtgggacacttccaaaaggttttgactgctattggaaacttctgcatctgttctattgcagtggggatgataatagagatcattgtgatgtaccctatccaacaccgcaaatatcgccctgggattgacaatcttcttgtccttctcattggtggaattccaattgccatgccaacggttctttcagtcacgatggcaattggatctcatcggctcgctcaacagggtgctattacgaaaagaatgacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33931" stop="32548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33631" g_stop="33566" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33565" i_stop="33476" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33475" g_stop="33296" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="246" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33295" i_stop="33200" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33199" g_stop="32993" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="453" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32992" i_stop="32874" i_length="119">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32873" g_stop="32848" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="479" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E295451" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33631" e_stop="33566"/>
          <exon e_start="33475" e_stop="33296"/>
          <exon e_start="33199" e_stop="32993"/>
          <exon e_start="32873" e_stop="32848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTGGGAGATATTATTCCTGCAGATGCTCGTCTTCTTGAAGGTGATCCCCTGAAAATTGACCAGGTGATTAAGTTTTTACGATTTAATAAGTGGTTGCTCACTGCATTCAATATTTTGTTTAACTGTGGCACTGATATTATCTATTACTTGCAGTCTGCTTTGACTGGTGAATCTCTTCCTGTAACTAAAGGTCCTGGAGATGGTGTCTACTCTGGTTCTACCTGTAAGCAGGGAGAGATAGAAGCTGTCGTCATCGCCACTGGGGTTCATACCTTTTTTGGGAAGGCTGCACACCTTGTTGACAGTACAAATCAAGTGGGACACTTCCAAAAGGCAAGTTGAACTTGTATTGTCTTATTTGTTTTGAATATTAGTTGATAATCTCATTCTTTTAAATCTCACATTCAATGTTGTTGATGTCTCTATCAGGTTTTGACTGCTATTGGAAACTTCTGCATCTGTTCTATTGCAGTGGGGATGATAATAGAGATCATTGTGATGTACCCTATCCAACACCGCAAATATCGCCCTGGGATTGACAATCTTCTTGTCCTTCTCATTGGTGGAATTCCAATTGCCATGCCAACGGTTCTTTCAGTCACGATGGCAATTGGATCTCATCGGCTCGCTCAACAGGTTTGTTAGTTAGCATCTTGATCTTAGGATGTGGTGTTTCAGCATGTCTTCAATCGTGAGTTATTGTAGTTCAACAGTTCTGATAAGCGATTGCATATTTCATCATTTTAACTATTCAGGGTGCTATTACGAAAAGAATGACAGC</genome_strand>
        <mrna_strand>AAACTGGGAGATATTATTCCTGCAGATGCTCGTCTTCTTGAAGGTGATCCCCTGAAAATTGACCAG..........................................................................................TCTGCTTTGACTGGTGAATCTCTTCCTGTAACTAAAGGTCCTGGAGATGGTGTCTACTCTGGTTCTACCTGTAAGCAGGGAGAGATAGAAGCTGTCGTCATCGCCACTGGGGTTCATACCTTTTTTGGGAAGGCTGCACACCTTGTTGACAGTACAAATCAAGTGGGACACTTCCAAAAG................................................................................................GTTTTGACTGCTATTGGAAACTTCTGCATCTGTTCTATTGCAGTGGGGATGATAATAGAGATCATTGTGATGTACCCTATCCAACACCGCAAATATCGCCCTGGGATTGACAATCTTCTTGTCCTTCTCATTGGTGGAATTCCAATTGCCATGCCAACGGTTCTTTCAGTCACGATGGCAATTGGATCTCATCGGCTCGCTCAACAG.......................................................................................................................GGTGCTATTACGAAAAGAATGACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739751" ref_strand="+" ref_description="SGN-E739751 [LC18CH03]">
      <seq>cgatcctgaggtgttagatgctgtattaaaggagactgtggatttggagaatatacccattgaagaagtttttgaaaatttgagatgtaccaaagagggtcttactggtacagctgcccaagaaaggttggcaatttttgggtacaacaaactagaggagaagaaggagagcaaattcttgaaatttctggggtttatgtggaaccccctctcatgggttatggaagctgctgctattatggcaattgctcttgcaaatggaggaggaaagcctccggattggcaagattttgtgggtattattaccttgctagtgattaactcaacaattagttttattgaggagaataatgctggcaatgcagcagctgctctcatggctcgtctcgctcctaaagccaaggttcttcgagatggaaaatggaatgaagaagatgctgctgttcttgttcctggggacattatcagtattaaactgggagatattattcctgcagatgctcgtcttcttgaaggtgatcccctgaaaattgaccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35097" stop="33266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34799" g_stop="34754" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34753" i_stop="34659" i_length="95">
            <donor d_prob="0.283" d_score="0.93"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34658" g_stop="34539" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="166" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34538" i_stop="34170" i_length="369">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34169" g_stop="34071" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="265" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34070" i_stop="33985" i_length="86">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33984" g_stop="33847" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="403" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33846" i_stop="33701" i_length="146">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33700" g_stop="33566" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="538" r_length="135" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E739751" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34799" e_stop="34754"/>
          <exon e_start="34658" e_stop="34539"/>
          <exon e_start="34169" e_stop="34071"/>
          <exon e_start="33984" e_stop="33847"/>
          <exon e_start="33700" e_stop="33566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCTGAGGTGTTAGATGCTGTATTAAAGGAGACTGTGGATTTGGTAATGGATCTGACTAAAAAGATCAAATTTTTGAACTTATATTTCGTTGGTTTTAATGGGTTTGTTTCCTTTTTTTGTTGGTGTTGTAATTGCAGGAGAATATACCCATTGAAGAAGTTTTTGAAAATTTGAGATGTACCAAAGAGGGTCTTACTGGTACAGCTGCCCAAGAAAGGTTGGCAATTTTTGGGTACAACAAACTAGAGGAGAAGAAGGTGTGGTGATGATTACTCTTTTTTTTTTTCCTTTTTGTAGAATTGTTCCTTTTCTTGTTTTTTTGATTCCCTTGCTGGTCCACTTTGAACTGAATCTCTGTATATTCTCTTCCTTTTTTGATTTGGTACTTTGATGGGTTAGTTTTCTTTTTTTTTTGTTGCTGAAATGTTTCCTCTTTTCTCCTTTTGTTTTCTTTGGATATCTTGTCTGTCTTGTTTGGACTTTGAATGGACTCTTTTTAGCTGAAAATTAGATGTCTTTAGTTGAACTAAGCTGAATTGATGGAGAATTTGATGCTTAAGTTTTTGACGTGAAAGTTAAAAGTGAACTGTTATCATTGTTGAGTGTTATTGTTTGCTGTGTTATAGGAGAGCAAATTCTTGAAATTTCTGGGGTTTATGTGGAACCCCCTCTCATGGGTTATGGAAGCTGCTGCTATTATGGCAATTGCTCTTGCAAATGGAGGAGTAAGTGCTAACAAGCTGATTTACCTTTATATTGGACAATATGCTGGTTCTTTTGACTTAAATTGAATATATGTCGAATTTTGTAGGGAAAGCCTCCGGATTGGCAAGATTTTGTGGGTATTATTACCTTGCTAGTGATTAACTCAACAATTAGTTTTATTGAGGAGAATAATGCTGGCAATGCAGCAGCTGCTCTCATGGCTCGTCTCGCTCCTAAAGCCAAGGTTCTAGATTCACCAACCATCATTGTTATTCAATTGCTATTAGACAGCATGTGAAAGTTGTTAACTTTCATAATTTTGATGGGAAGTATGAGGTTGAGAAACTAATGGAAAGTTGTCTTAATTGTTTGCTCTTGTGATATATGCAGGTTCTTCGAGATGGAAAATGGAATGAAGAAGATGCTGCTGTTCTTGTTCCTGGGGACATTATCAGTATTAAACTGGGAGATATTATTCCTGCAGATGCTCGTCTTCTTGAAGGTGATCCCCTGAAAATTGACCAG</genome_strand>
        <mrna_strand>CGATCCTGAGGTGTTAGATGCTGTATTAAAGGAGACTGTGGATTTG...............................................................................................GAGAATATACCCATTGAAGAAGTTTTTGAAAATTTGAGATGTACCAAAGAGGGTCTTACTGGTACAGCTGCCCAAGAAAGGTTGGCAATTTTTGGGTACAACAAACTAGAGGAGAAGAAG.................................................................................................................................................................................................................................................................................................................................................................................GAGAGCAAATTCTTGAAATTTCTGGGGTTTATGTGGAACCCCCTCTCATGGGTTATGGAAGCTGCTGCTATTATGGCAATTGCTCTTGCAAATGGAGGA......................................................................................GGAAAGCCTCCGGATTGGCAAGATTTTGTGGGTATTATTACCTTGCTAGTGATTAACTCAACAATTAGTTTTATTGAGGAGAATAATGCTGGCAATGCAGCAGCTGCTCTCATGGCTCGTCTCGCTCCTAAAGCCAAG..................................................................................................................................................GTTCTTCGAGATGGAAAATGGAATGAAGAAGATGCTGCTGTTCTTGTTCCTGGGGACATTATCAGTATTAAACTGGGAGATATTATTCCTGCAGATGCTCGTCTTCTTGAAGGTGATCCCCTGAAAATTGACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746475" ref_strand="+" ref_description="SGN-E746475 [GI|47104979]">
      <seq>gacccttccaaatttcatcatttcaactgaagaaacagcaattgctaccggaaaaatgggggtcgattactataacatacttaaggttaatcgtaacgccagtgaagaagatttgcgtaaagcttatcggcggttagcgatgatttggcatcctgataagaaccttggcaccaataagtatgaggcggaggcaaaattcaggcaaatttctgaagcttatgatgttcttagcgatccacagaagcgtcagatctacgatctatacggtgaggaggcgttgaaaacgggtcaggtgccacctcctccaagaggtggaccccacaacatgcggaatcctcatcctaatccttcgttccggtttaatcctagagatgctgatgatatttatgcggaattgtttggggcatcgtcatcggagaataatgggagggcgaggaagactcgagatgggttttttaggagtaccacgaatggaggggctgagttttccggtgctgggaactccagtaccggagggttaagaaaggctgcgccagtggagaatgcattgttgtgccgtttggaggatttgtataaaggggccaagaaaaagatgaaaatttctaggactgtcttggattcttccgggaagcttcgaactctggaggagatattgaccattgatattaaacctggttggaagaaaggaaccaaggtaacttttcctgaaaaaggaaatgaggaacctggtgtcattccagcagatctggtgtttgtaatagaggaaaaacctcatcatgtctatgtgagagatggtaatgaccttactgtcaatcaagagatttcacttcttgaagctctcacggggaaaacactggaactgacaacactggatgggagaaacctcattattccattgaccgacattgtcaaaccagggcatgagataatagtaccaaatgaagggatgccaatctcaaaagagcctcggaaaaaaggaaatctgagaatcaagatagatgttaagtatccaacaaggctcacagaagcacagaaatctgacctcaggagagttctcggccaggggtgaccatatgaacataggtattcagattacaaggggtgactatatgaacacaggtagatagagcagaatgcagacgttggatgtaaatataggatatgcttattgcttgcaactggaactgtgaatactaggaaggtctagtagcctcaatgttttggggacaaaggatttttgggggagttcggatagtggtgggattaattttttcattggtcggggacatatccctccacattatttgatcgataaaatatagatgatgttaatgcaagctcttctcttctgttgcttgtgattttaggggtctgatcaagacaaaaatgcactaggatcttgcatttgagttggttcaatgttgaattatgtccattatatgttgacatagagcaagatttatgtttttctcccttgagaaaaccccctgctcttttcttggtctcttttcttctttttcctgcatcatgtactgaaaaatgacagcagatcagacattcttaagttgttacaaaatccattgttcttaagcagcacaattttgtggttgttttctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43989" stop="51844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44288" g_stop="44914" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44915" i_stop="50553" i_length="5639">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50554" g_stop="51541" g_length="988"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="1615" r_length="988" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1617" polyA_stop="1631"/>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E746475" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1615</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44288" e_stop="44914"/>
          <exon e_start="50554" e_stop="51541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCCTTCCAAATTTCATCATTTCAACTGAAGAAACAGCAATTGCTACCGGAAAAATGGGGGTCGATTACTATAACATACTTAAGGTTAATCGTAACGCCAGTGAAGAAGATTTGCGTAAAGCTTATCGGCGGTTAGCGATGATTTGGCATCCTGATAAGAACCTTGGCACCAATAAGTATGAGGCGGAGGCAAAATTCAAGCAAATTTCTGAAGCTTATGATGTTCTTAGCGATCCACAGAAGCGTCAGATCTACGATCTATACGGTGAGGAGGCGTTGAAAACGGGTCAGGTGCCACCTCCTCCAAGAGGTGGACCCCACAACATGCGGAATCCTCATCCTAATCCTTCGTTCCGGTTTAATCCTAGAGATGCTGATGATATTTATGCGGAATTGTTTGGGGCATCGTCATCGGAGAATAATGGGAGGGCGAGGAAGACTCGAGATGGGTTTTTTAGGAGTACCACGAATGGAGGGGCTGAGTTTTCCGGTGCTGGGAACTCCAGTACCGGAGGGTTAAGAAAGGCTGCGCCAGTGGAGAATGCATTGTTGTGCCGTTTGGAGGATTTGTATAAAGGGGCCAAGAAAAAGATGAAAATTTCTAGGACTGTCTTGGATTCTTCCGGGTATGTTCAATTTGTCTGCACTAATTGTTGCAAATTTCTTGGTATTTGTAATGCTGTATGTTGCTGATGAATCAGGTTACTCTTGCTGATTATATTTTTATTGAGAAATTCTTTGTGCATTTTGTTAAAGATTGGATTTTTCATTTATCGAGTAAGTATATGTGCATTTTGAGAATTTCATAAGAGCAGTGCATGGGGATGTGTATGTTTTTAGGCTACTTTATCTGCTGTTATAACTTCACGAGAGCATTTTCAAAGTTGAATGAGGTTTGGGTGCGCATCACAATGAAATTTCTTTTCATGCCTAGTTTGTTGGTTAATATCTGGTGTGGTTGACTTGCATTGGTGAGATTGAGATACTTTGCTGAATGCATATAAAACATTAGATTTATAGTGCAGTGTTATCTTTACATGATGGAGTAGTACTTGCTTAGGGAACATAACCACCCTTTTGGAGTTTAGAAGATGGCTAGATTGGTTGGATGCTGTGAATTTGTAGTTGGAAATTTGTGCATTTAGCACCAAGTGTGTAACTTGCAAAGGAATGAATGCTGTGAAGTTGTTAGTTGAAAATTGTTTCATTTAGGACAAAGTGTATGAATTGCAAAAGAATGTGTATTATTAGGAGTTTCACTTCTAAGAGTGATTCTTTTGGAGAAAGTACTGCTCCATAAAGCTTAGTTGCAAATTATAGTTGTAGTTGAAAGAAATTGCTAAGTTTGAACACAGATACTTGATTGACATACCAATGGCTTAAATAGAGTGATTAAAATACACAATTTGTTGGAGGGGGGCTACACTTTGATGTAGTATAGCTGTGGATATATAGAAGTAAATGTTACCTTTCTCAAAGAAAAAAACTCAATTGTCTTGAAAACAGAAATGCACATAAGAGATTTAGTTGTAGTTGCAAGCTTGATCTAAGCAGAGAGCTAATCACCGATGAGGAGATCATCAACAATATCATATGAATATCCACTAATCTGTTGAGGTCTTTAATTTGGATTGAGTCACTGGAGGATTAACGGGAAAGTCAGTCTCATCAGGCAAGTTTAAGCCTTTGTTCTTGTTCCTTGACTTGCTGATGATTGCTGAATTTGCAATTGATTTGGGGAAATGCAGACCTGGGAACTTGTTTTAGAAAGTTTCAGATCTCTGTAACTTGATGAATAATCAACCTGTTTTTTATCAGTAAACGTCAACTCTCTTAAATAGAGGGCTGCAGTAGCAAAGTCCCAACAAATGAGAAATAACAAGCATCCTATAAATAGGAAATAACGTAAGTCCAAATCCACTCCGGGAAGTTTTATTTCAAGTCAACAAAATAATTCAGAAAATATCAATCATTATCTTTCCTCTAGGCTGAACCTAAAGGATTGAAGACCTGTTTAGAATCCTGGTAACGTTGCTTCACCGACAGTAGAGGAAAGTGACTTGCTCCAGTAACTCTTTAAGGAAGAAAAGGTTCTGAGAGTGATGCACTGTTGCCGACAAAGATCTTGATCTTGATGGTTATTCTGTGGGCTTATATTAGAAATCTTGGTCTGTGGTATTTGACCTATTTCTGGCTATAAATCACTTCCATATGCATGAGCAACTTCAAAGGAGTTACATTGCTTATTAGTGTTAGTGCAGTGTTATGTTTCTATTCTAATCCTCTCAAAGCTGCTTACTGAAGGGTTGAAAGGTGATTGGCAAACCTGTGGAAAATTTCTCAATGTATTTCAACCAAAGTAACTGATGCATCTGTTCTTCCAAATGAATGCCTAGATGCTAATGTCGAGTCTGGTGTCCCTTGGATTTGCTAAATTTGTTCCTATGTAATCATCTTCCTTGAGCTTTCCTGGTATCACAATTGTCTTGTAGAGATGCCTGAAGTGATAACTCCTGACCTCTTCATGCCTGGTGCTTGTCTTGTTGTCATTCCGATGTCCTTGACTGTATCATGGATCAGCATTGCGAGTCCATATACCATCAATTACTAACCAAACAAAGGTTTAAGGACTTTTTAAATATGTGTGGAATAGCCCTTATTAGTTGAAACTTCTAAATAAACCAAAGTAAACCTTATCAAAAAATATCCTTGTTCTTTAGCAAATATTGAAGCTAACATTACGTCAATCATTTTGTAATATTGTACAGATGCTATTTATAACTTTATGACCGATTGAAATTTGTTATGGAACTTGTATGATTGAAACAAAGAGCTTGTATAGACGTGACCAACTAGTTGATAATAATGTAATCCACATAGAGTTTAAGGTTTAGGTAACTCCTACTTTTGAATTACAAATTATTTAGTATTAGAACAAAATAAGTTTGAATAGAATGGAACAGATTCAGAGGTTTCATGTGGTTGACTCGGTCTGATTTGGTTGAGCTGTAGTTGATTGATCCGATTGAGGTTTCGGTTCCTAACTAGTCCAATGCCCAAGTTCTAATAGGAGGGAAGATCATTAATAATTTGAGCACGACTATTTGATGGAGTCCGGAGCCAAAAGGGCAAAAAAATTGAGAGAAATTTCCGAAAAGGCAACAAAAAATAAGGTTCAAACCAGAAGGGCAATATTTAGATGGAAAGTGGGATGCCGTGAAATTTATGGAGTAAGGCGCAGCCTGACATGCGCCTTACAGGACGCAACCAACATGATACTTGTAAGTCGCATGCCGGCTTGCGCCTTATAAGGGGCATTTCAGGCTGCGCCTTACTCCTTAAATATAATAAAAAAATGTTTAGTCACTGTAGTCTATAGTGGTGCGAAAATTATTCATTAAGAGACTTTGGAGCTTATTAATTAATATTATTACTACTATTATCAACAATTTTAAGTTTAAAGAGTAGAAATAATTAAGAAATGGGAAGTAATGTTATAATGTATGAATTTACTTATAATAGTTTTGAGATATCAATTGAATAAATGGGGAATTTGTAATCGCTTTTTGGTGAAATCAAAGGATTTATTGTTTTCCATTTGGATTGTATATGTGTATTTATTTGGAAATAATCTAACTATACACTAAAGAATGAAAATATTCTTTTAAATCTATTTCTTAGTCCTTGCAGAACATTAGGAAAAGAAAGTGTAACCCCACCCCACCTCAACTACCCCCACCTCCTCATAATGGCCAGATGCCAACTCTACTTTTCCATAAAAATGAATATGGAAAATAGTTTAACGTAAAAGTGGGAATTAATAGAGAATTAAACGATGGTGACTGCTCTTTAAGCAAAAGTTGATGTTCTGATTAAGTTGTTTGAGTGAAGTAAAAAGTTACACAACTCTACTAAATGTTTTTTTAATTTTATTTTAAGGAGTAAGGCGCAGCCTGACATGCGCAAGCCGACAAGCAACTTACAAGTATCATGTTAGTTTGCGCCTTACTCCATCAATTTTTTTTGAAACAGGTAACATTACTCTATATATCCACAGGTAAAAGTGTAGTTCCCCTTCAAGCTTACTCCGTAAATTTCACGGCATCCCCCTTCGGTCTAAATGTTGCCTTTTTGGTTTGAACCTTACTTTTTGTTGCCCTTTTGGAAATTTTGCTCAATTTTTTTGCCCTTTTGGCTCCGGACTCCTGTTTGATGTATCAAAAATAAATTTGATAGATCCTATCTTATCAAAAAATAATAAATAAACATGATAGATCCTCCAGTAAACTACTGTGGTAAATCTCGTGGCTAAAGATATGCATAGCTTTTCTGCCTTTTCAAGCATTGTTACATATATGCAGCCCAAATGTGGTGCCGATTCTTAACCACACATAAGTGTGTCAATAACAAAATAGGTACTATTTTAACAAGAACACTCTATAACAAAATAGCTGCAATTGTCATTCTTCACTGCTGTATTAATAAAATCACATAAAAAACATTTGAAATCCTCTTACAATCTATGGGTATTGTTTACAGAACTGACTATTCTAAACTCGTCTTTTGTACCTTCAATTTGTTCACATCTCTAGGTGAATTTTGGAATTTCTTGGTTTAATTTTGTGATGTGAACGGGCAACTTTGATATACTGCTCCCTTTTTCCTTCCTTAGCTGTGATATACATCTTTGTTTGCAACCATAATTTCTAACAAGTCTCGACTTTCTGCTTGGATGTATTATTGTTCTTTCCAAATACTTAATATTTGCAATTTTTAGTCACAGAAATCCTTTAGACTCTTAAAATACACCTTATTTAATTAAGTAACTTCTTTTAGAACCTTGTATAATTATTCGTTTATTCTCTATAACTTTATATTATGCACTCTTCCCTCATACACTAAGGGGTCGTTTGGTTGCTGAATTATAAACAAGTTATCCATGTATTTATTTTCATATAACTTATATGATGTTAGGTAGGTAGATATGAAATAGGTTATTCATGTATAACATTGATGCGGCGTTTAGTTGACAATTTGGAAACCCGCATAATTAATACATGTATAAGTTAAGAGGGAATCTATCTATTACATTATGCAGGATAAAATATGGAATAACTAATTCATGTATAAACTAATCCCAATCCCTGCATAACTTGTACATGCATAAATAATTCATAGATTCACTCATTACTAATCTTTGCATTACTAATCCCTACAATATGCTGAGATTATTTCTTATCCTCTGTCTGGTTTGGTGTATCAAAGACAATTCTATTTTTAACTTTTCCCATCCATGTATTACCTTGTATTGCTAATGTTATGATTTTCTGTATAAGTAACACCCTATAATATTAAGTAAGGTGTACAACTAATACATGTATTATTTATACATTGTAAATCCTACCAACCCAAGGATTAAATAATACCACGTCTAATACATGTATTATTTATACATAGGCTGAAAATCTTTCAAAACAAAGTATGAAATAATAGCATGACTAATACATGTATTATTTTCTCTAATACATCCTACCAAACGACCCTTAAGAGTGAAATGGTTCTTTATAAGAAATAGAACTCGGGCCTACCAAAAACCTAAAGCTAGCTTAAGAGGTAGTGAGTATTATCCGAAACCATAAAAGAAGACGACCCATTTCTTCCATTGATGTGGGACACTTAACACCCTCTCCCACACTTAGACATCTGGAGCATGGACAATATGATATGGGGGCCAAGTATTGGGTAATCTGTTGTTCTCGGAGGTCTTTTACCTGAAGTCAGCAGAGGAAATTGAGATTATGAGATAAGAAATATGTGACTGTATGAAATGGTTTATGTTGCTTTGAATTTGGCTATGTGATCAGTATGAATATAAATTATTCGTTAAGTACTAAAGTCTCGGTTGGGCTTCTAATCTTTAATTATTAGCCAACATTTTTGGTGTGTAGATTAATGATGACGGTCCATCAAGAAATGAACTTCCCTTGTTGGAACATAATTTTTGTAATTCACCAAACCCTGTTTTTGACATGAGCTGTTTGTATGTTATTTTTGTTTGTCATGTATACTTTAATTTATTTTGTATATCTTTCGACCTATAGAAAAGTTTGTTGACAACTTGACTACTATGTGCTATGTGATGACAATTTGACCATACATTCTGTAATTTCGTTTCCTTTAGGATGTTCATCAATATAATTGATAATAATATATTATCCAGATCATGTTTTACTTTGTTATAATATGTATATACTTCTTTTCGCAGGAAGCTTCGAACTCTGGAGGAGATATTGACCATTGATATTAAACCTGGTTGGAAGAAAGGAACCAAGGTAACTTTTCCTGAAAAAGGAAATGAGGAACCTGGTGTCATTCCAGCAGATCTGGTGTTTGTAATAGAGGAAAAACCTCATCATGTCTATGTGAGAGATGGTAATGACCTTACTGTCAATCAAGAGATTTCACTTCTTGAAGCTCTCACGGGGAAAACACTGGAACTGACAACACTGGATGGGAGAAACCTCATTATTCCATTGACCGACATTGTCAAACCAGGGCATGAGATAATAGTACCAAATGAAGGGATGCCAATCTCAAAAGAGCCTCGGAAAAAAGGAAATCTGAGAATCAAGATAGATGTTAAGTATCCAACAAGGCTCACAGAAGCACAGAAATCTGACCTCAGGAGAGTTCTCGGCCAGGGGTGACCATATGAACATAGGTATTCAGATTACAAGGGGTGACTATATGAACACAGGTAGATAGAGCAGAATGCAGACGTTGGATGTAAATATAGGATATGCTTATTGCTTGCAACTGGAACTGTGAATACTAGGAAGGTCTAGTAGCCTCAATGTTTTGGGGACAAAGGATTTTTGGGGGAGTTCGGATAGTGGTGGGATTAATTTTTTCATTGGTCGGGGACATATCCCTCCACATTATTTGATCGATAAAATATAGATGATGTTAATGCAAGCTCTTCTCTTCTGTTGCTTGTGATTTTAGGGGTCTGATCAAGACAAAAATGCACTAGGATCTTGCATTTGAGTTGGTTCAATGTTGAATTATGTCCATTATATGTTGACATAGAGCAAGATTTATGTTTTTCTCCCTTGAGAAAACCCCCTGCTCTTTTCTTGGTCTCTTTTCTTCTTTTTCCTGCATCATGTACTGAAAAATGACAGCAGATCAGACATTCTTAAGTTGTTACAAAATCCATTGTTCTTAAGCAGCACAATTTTGTGGTTGTTTTC</genome_strand>
        <mrna_strand>GACCCTTCCAAATTTCATCATTTCAACTGAAGAAACAGCAATTGCTACCGGAAAAATGGGGGTCGATTACTATAACATACTTAAGGTTAATCGTAACGCCAGTGAAGAAGATTTGCGTAAAGCTTATCGGCGGTTAGCGATGATTTGGCATCCTGATAAGAACCTTGGCACCAATAAGTATGAGGCGGAGGCAAAATTCAGGCAAATTTCTGAAGCTTATGATGTTCTTAGCGATCCACAGAAGCGTCAGATCTACGATCTATACGGTGAGGAGGCGTTGAAAACGGGTCAGGTGCCACCTCCTCCAAGAGGTGGACCCCACAACATGCGGAATCCTCATCCTAATCCTTCGTTCCGGTTTAATCCTAGAGATGCTGATGATATTTATGCGGAATTGTTTGGGGCATCGTCATCGGAGAATAATGGGAGGGCGAGGAAGACTCGAGATGGGTTTTTTAGGAGTACCACGAATGGAGGGGCTGAGTTTTCCGGTGCTGGGAACTCCAGTACCGGAGGGTTAAGAAAGGCTGCGCCAGTGGAGAATGCATTGTTGTGCCGTTTGGAGGATTTGTATAAAGGGGCCAAGAAAAAGATGAAAATTTCTAGGACTGTCTTGGATTCTTCCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTTCGAACTCTGGAGGAGATATTGACCATTGATATTAAACCTGGTTGGAAGAAAGGAACCAAGGTAACTTTTCCTGAAAAAGGAAATGAGGAACCTGGTGTCATTCCAGCAGATCTGGTGTTTGTAATAGAGGAAAAACCTCATCATGTCTATGTGAGAGATGGTAATGACCTTACTGTCAATCAAGAGATTTCACTTCTTGAAGCTCTCACGGGGAAAACACTGGAACTGACAACACTGGATGGGAGAAACCTCATTATTCCATTGACCGACATTGTCAAACCAGGGCATGAGATAATAGTACCAAATGAAGGGATGCCAATCTCAAAAGAGCCTCGGAAAAAAGGAAATCTGAGAATCAAGATAGATGTTAAGTATCCAACAAGGCTCACAGAAGCACAGAAATCTGACCTCAGGAGAGTTCTCGGCCAGGGGTGACCATATGAACATAGGTATTCAGATTACAAGGGGTGACTATATGAACACAGGTAGATAGAGCAGAATGCAGACGTTGGATGTAAATATAGGATATGCTTATTGCTTGCAACTGGAACTGTGAATACTAGGAAGGTCTAGTAGCCTCAATGTTTTGGGGACAAAGGATTTTTGGGGGAGTTCGGATAGTGGTGGGATTAATTTTTTCATTGGTCGGGGACATATCCCTCCACATTATTTGATCGATAAAATATAGATGATGTTAATGCAAGCTCTTCTCTTCTGTTGCTTGTGATTTTAGGGGTCTGATCAAGACAAAAATGCACTAGGATCTTGCATTTGAGTTGGTTCAATGTTGAATTATGTCCATTATATGTTGACATAGAGCAAGATTTATGTTTTTCTCCCTTGAGAAAACCCCCTGCTCTTTTCTTGGTCTCTTTTCTTCTTTTTCCTGCATCATGTACTGAAAAATGACAGCAGATCAGACATTCTTAAGTTGTTACAAAATCCATTGTTCTTAAGCAGCACAATTTTGTGGTTGTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746565" ref_strand="+" ref_description="SGN-E746565 [GI|47104185]">
      <seq>ctccattacaatttccacatactttcttcttcatcaagtctctttcctccatagacttatccccaaatatataaactcacccatcttaactatcgaaatacccatttcgattcttcactccttcgctagctttgttgcttcgagtatgggcaatctattgggctgtgtacaagttgatcaatccaccgtcgcaattacagagcagtttggcaagtatcaagatgtgcttcagccaggttgccactgcctgccttggtgcttcggattccagttagctggccatctctccctcagggtgcaacaattggatgttcgctgcgagacaaagacaaaggataatgtgtttgtcaatgttgtggcatcaattcagtaccgtgccctggcagacaaagcaaatgatgctttctacaaactaagcaacactaagggtcaaattcaggcctatgtttttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaaaaatgaaattgccaaggctgtcgaggatgaacttgagaaggctatgtcggcttatggatatgaaattgttcaaacacttatagttgatatagaaccagatgagaatgtgaagagagctatgaatgaaatcaatgctgctgctcggctgagggtggctgctaatgagaaagcagaggcggagaagattttgcaaattaagagggctgaaggagaggcagaatcaaagtatctttcagggttaggtattgcacgacagcgtcaagcgattgtggatggtttgagagacagcgtgctcggattctcagtgaatgtgcctggaacctcagcaaaagatgtaatggacatggtccttttaacccagtactttgacaccatgaaagaaattggcgcttccagtaaatcatctgctgtcttccttcctcatgggcctggtgctgtaagagatgtggcaagccagatccgcgatggactccttcaagcttctgtgaaccattaaatgtttctactatatcagaaatgttaattgtgtttcacttgaagcagcctttttcattttgtgtttactttctgttagtgtggatatgtttggcgagtttgactttgtatttgtgaatgcctctagtatcttatattgtaaagaatttaatatcccagacctttgaagaattatatactattaatagatggatgtgatatttctcctcgttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60084" stop="63230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60384" g_stop="60525" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60526" i_stop="61260" i_length="735">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61261" g_stop="61452" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="334" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61453" i_stop="61625" i_length="173">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61626" g_stop="61746" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="455" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61747" i_stop="61845" i_length="99">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61846" g_stop="61937" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="547" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61938" i_stop="62028" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62029" g_stop="62125" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="644" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62126" i_stop="62358" i_length="233">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62359" g_stop="62929" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="1215" r_length="571" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1216" polyA_stop="1231"/>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E746565" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1215</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60384" e_stop="60525"/>
          <exon e_start="61261" e_stop="61452"/>
          <exon e_start="61626" e_stop="61746"/>
          <exon e_start="61846" e_stop="61937"/>
          <exon e_start="62029" e_stop="62125"/>
          <exon e_start="62359" e_stop="62929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCATTACAATTTCCACATACTTTCTTCTTCATCAAGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCGGTATGTTTATGTACATATGCACATACTTTATACAATTTCAATTTTTCTATTTGTTCTTATAGTTTAATCGTTTTTGTGTTAAGACCTAATGTGTGAAGGAAGACTTGCTTGCTAGTTTGATCTAGGTCAACTCTGTATACTTTCAAATTAAAATTTTGATATTTCGAAAAATGTCACATGAATTGGGGAGGGGACAGTAGTTATAAGCAGAAAAGTGTTGTTCTAGTTTCTTTAATGCCATGAAATTTAGTTTATAGCCTTGTTGGATTGGGTGTTGGATTATGGGTTTGATAAGGTAAAGTGGGTTGAGAAATTTGACAGCAGAATTTAACTTTGCCTTTTATAGATGAATATTGAAAACAACAATTGAACTGGTGATATTGTCATTTAATCTTTTCTTAGTTAACTGGGAGAGTTTATTGCTGATGTTCAGTAACTTTGTAAAAGAAACTAGAGTAGCAGTTGCTCCCTAAAGTGTGACTTAACAGTTTGTAATCTTTAGTTCCAGGGAGAAGTTCGAGAATATTACCCTTTTTGGATTTGTGAACTTGAGGTGTCCCAAGTGTAATTTGTAAAGTGTAAACTAACTATTGTGTTCTTTTCGTTTTAGAATTTGTTACTCGTTTAAATTGCTCCTTTATAATGACAGGTTCTGATGGTGTAATATATCATTTTTTGAGTTTGTTTTATGGGTGACTTCTGTGAATAATCTTCCTTTTCATGCAATCGTTGCAGAGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAGGTCTATTCTTTATTCCGAAACAGTAATTCCATTGTTTTGACACAAGCTGTGTTGGTTCGCAGCCAAATCATCAAAGTCAACCACAATTTGCACTTTAACAAACATAACTAGGTGATGATTTTTCAGTATTTATGCATATTAATGACTTAATACATATTGCAACAAATGTGCAGGATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTGGTATGGCTAAAATCTCATCTCTTTAGTTAAGCCTGATGCCTGCTGGTTCTCAACTGCTCTGACTAGTTAGTACTTTGTCCAAGAGGACTATATACATCAGTTGATGGAGGGGGCTACAGTGGGATTCGAACCCACCATCACTAGTGTGAAGGTGTGGGCAGCTCCCCAACTGAGCTACAAGCCACACTATAAAAGAGTATCTTTTCATGTCCTAATTGTTTTCAATTCTACAGCTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTA</genome_strand>
        <mrna_strand>CTCCATTACAATTTCCACATACTTTCTTCTTCATCAAGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG.............................................................................................................................................................................GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG...........................................................................................GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG.........................................................................................................................................................................................................................................CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371198" ref_strand="+" ref_description="SGN-E371198 [TUS-28-F19]">
      <seq>tccattacaatttccacatactttcttcttcatcaagtctctttcctccatagacttatccccaaatatataaactcacccatcttaactatcgaaatacccatttcgattcttcactccttcgctagctttgttgcttcgagtatgggcaatctattgggctgtgtacaagttgatcaatccaccgtcgcaattacagagcagtttggcaagtatcaagatgtgcttcagccaggttgccactgcctgccttggtgcttcggattccagttagctggccatctctccctcagggtgcaacaattggatgttcgctgcgagacaaagacaaaggataatgtgtttgtcaatgttgtggcatcaattcagtaccgtgccctggcagacaaagcaaatgatgctttctacaaactaagcaacactaagggtcaaattcaggcctatgtttttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaaaaatgaaattgccaaggctgtcgaggatgaacttgagaaggctatgtcggcttatggatatgaaattgttcaaacacttatagttgatatagaaccagatgagaatgtgaagagagctatgaatgaaatcaatgctgctgctcggctgagggtggctgctaatgagaaagcagaggcggagaagattttgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60085" stop="62714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60385" g_stop="60525" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60526" i_stop="61260" i_length="735">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61261" g_stop="61452" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="333" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61453" i_stop="61625" i_length="173">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61626" g_stop="61746" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="454" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61747" i_stop="61845" i_length="99">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61846" g_stop="61937" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="546" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61938" i_stop="62028" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62029" g_stop="62125" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="643" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62126" i_stop="62358" i_length="233">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62359" g_stop="62414" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="699" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E371198" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60385" e_stop="60525"/>
          <exon e_start="61261" e_stop="61452"/>
          <exon e_start="61626" e_stop="61746"/>
          <exon e_start="61846" e_stop="61937"/>
          <exon e_start="62029" e_stop="62125"/>
          <exon e_start="62359" e_stop="62414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTACAATTTCCACATACTTTCTTCTTCATCAAGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCGGTATGTTTATGTACATATGCACATACTTTATACAATTTCAATTTTTCTATTTGTTCTTATAGTTTAATCGTTTTTGTGTTAAGACCTAATGTGTGAAGGAAGACTTGCTTGCTAGTTTGATCTAGGTCAACTCTGTATACTTTCAAATTAAAATTTTGATATTTCGAAAAATGTCACATGAATTGGGGAGGGGACAGTAGTTATAAGCAGAAAAGTGTTGTTCTAGTTTCTTTAATGCCATGAAATTTAGTTTATAGCCTTGTTGGATTGGGTGTTGGATTATGGGTTTGATAAGGTAAAGTGGGTTGAGAAATTTGACAGCAGAATTTAACTTTGCCTTTTATAGATGAATATTGAAAACAACAATTGAACTGGTGATATTGTCATTTAATCTTTTCTTAGTTAACTGGGAGAGTTTATTGCTGATGTTCAGTAACTTTGTAAAAGAAACTAGAGTAGCAGTTGCTCCCTAAAGTGTGACTTAACAGTTTGTAATCTTTAGTTCCAGGGAGAAGTTCGAGAATATTACCCTTTTTGGATTTGTGAACTTGAGGTGTCCCAAGTGTAATTTGTAAAGTGTAAACTAACTATTGTGTTCTTTTCGTTTTAGAATTTGTTACTCGTTTAAATTGCTCCTTTATAATGACAGGTTCTGATGGTGTAATATATCATTTTTTGAGTTTGTTTTATGGGTGACTTCTGTGAATAATCTTCCTTTTCATGCAATCGTTGCAGAGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAGGTCTATTCTTTATTCCGAAACAGTAATTCCATTGTTTTGACACAAGCTGTGTTGGTTCGCAGCCAAATCATCAAAGTCAACCACAATTTGCACTTTAACAAACATAACTAGGTGATGATTTTTCAGTATTTATGCATATTAATGACTTAATACATATTGCAACAAATGTGCAGGATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTGGTATGGCTAAAATCTCATCTCTTTAGTTAAGCCTGATGCCTGCTGGTTCTCAACTGCTCTGACTAGTTAGTACTTTGTCCAAGAGGACTATATACATCAGTTGATGGAGGGGGCTACAGTGGGATTCGAACCCACCATCACTAGTGTGAAGGTGTGGGCAGCTCCCCAACTGAGCTACAAGCCACACTATAAAAGAGTATCTTTTCATGTCCTAATTGTTTTCAATTCTACAGCTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAA</genome_strand>
        <mrna_strand>TCCATTACAATTTCCACATACTTTCTTCTTCATCAAGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG.............................................................................................................................................................................GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG...........................................................................................GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG.........................................................................................................................................................................................................................................CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370709" ref_strand="+" ref_description="SGN-E370709 [TUS-28-F20]">
      <seq>tccattacaatttccacatactttcttcttcatcaagtctctttcctccatagacttatccccaaatatataaactcacccatcttaactatcgaaatacccatttcgattcttcactccttcgctagctttgttgcttcgagtatgggcaatctattgggctgtgtacaagttgatcaatccaccgtcgcaattacagagcagtttggcaagtatcaagatgtgcttcagccaggttgccactgcctgccttggtgcttcggattccagttagctggccatctctccctcagggtgcaacaattggatgttcgctgcgagacaaagacaaaggataatgtgtttgtcaatgttgtggcatcaattcagtaccgtgccctggcagacaaagcaaatgatgctttctacaaactaagcaacactaagggtcaaattcaggcctatgtttttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaaaaatgaaattgccaaggctgtcgaggatgaacttgagaaggctatgtcggcttatggatatgaaattgttcaaacacttatagttgatatagaaccagatgagaatgtgaagagagctatgaatgaaatcaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60085" stop="62424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60385" g_stop="60525" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60526" i_stop="61260" i_length="735">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61261" g_stop="61452" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="333" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61453" i_stop="61625" i_length="173">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61626" g_stop="61746" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="454" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61747" i_stop="61845" i_length="99">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61846" g_stop="61937" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="546" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61938" i_stop="62028" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62029" g_stop="62124" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="642" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E370709" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60385" e_stop="60525"/>
          <exon e_start="61261" e_stop="61452"/>
          <exon e_start="61626" e_stop="61746"/>
          <exon e_start="61846" e_stop="61937"/>
          <exon e_start="62029" e_stop="62124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTACAATTTCCACATACTTTCTTCTTCATCAAGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCGGTATGTTTATGTACATATGCACATACTTTATACAATTTCAATTTTTCTATTTGTTCTTATAGTTTAATCGTTTTTGTGTTAAGACCTAATGTGTGAAGGAAGACTTGCTTGCTAGTTTGATCTAGGTCAACTCTGTATACTTTCAAATTAAAATTTTGATATTTCGAAAAATGTCACATGAATTGGGGAGGGGACAGTAGTTATAAGCAGAAAAGTGTTGTTCTAGTTTCTTTAATGCCATGAAATTTAGTTTATAGCCTTGTTGGATTGGGTGTTGGATTATGGGTTTGATAAGGTAAAGTGGGTTGAGAAATTTGACAGCAGAATTTAACTTTGCCTTTTATAGATGAATATTGAAAACAACAATTGAACTGGTGATATTGTCATTTAATCTTTTCTTAGTTAACTGGGAGAGTTTATTGCTGATGTTCAGTAACTTTGTAAAAGAAACTAGAGTAGCAGTTGCTCCCTAAAGTGTGACTTAACAGTTTGTAATCTTTAGTTCCAGGGAGAAGTTCGAGAATATTACCCTTTTTGGATTTGTGAACTTGAGGTGTCCCAAGTGTAATTTGTAAAGTGTAAACTAACTATTGTGTTCTTTTCGTTTTAGAATTTGTTACTCGTTTAAATTGCTCCTTTATAATGACAGGTTCTGATGGTGTAATATATCATTTTTTGAGTTTGTTTTATGGGTGACTTCTGTGAATAATCTTCCTTTTCATGCAATCGTTGCAGAGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAGGTCTATTCTTTATTCCGAAACAGTAATTCCATTGTTTTGACACAAGCTGTGTTGGTTCGCAGCCAAATCATCAAAGTCAACCACAATTTGCACTTTAACAAACATAACTAGGTGATGATTTTTCAGTATTTATGCATATTAATGACTTAATACATATTGCAACAAATGTGCAGGATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCT</genome_strand>
        <mrna_strand>TCCATTACAATTTCCACATACTTTCTTCTTCATCAAGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG.............................................................................................................................................................................GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG...........................................................................................GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270759" ref_strand="+" ref_description="SGN-E270759 [cLEM-6-J8]">
      <seq>tccattacaatttccacatactttcttcttcatcaagtctctttgctccatagacttatccccaaatatataaactcacccatcttaactatcgaaatacccatttcgattcttcactccttcgctagctttgttgcttcgagtatgggcaatctattgggctgtgtacaagttgatcaatccaccgtcgcaattacagagcagtttggcaagtatcaagatgtgcttcagccaggttgccactgcctgccttggtgcttcggattccagttagctggccatctctccctcagggtgcaacaattggatgttcgctgcgagacaaagacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60085" stop="61751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60385" g_stop="60525" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60526" i_stop="61260" i_length="735">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61261" g_stop="61451" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="332" r_length="191" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E270759" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60385" e_stop="60525"/>
          <exon e_start="61261" e_stop="61451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTACAATTTCCACATACTTTCTTCTTCATCAAGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCGGTATGTTTATGTACATATGCACATACTTTATACAATTTCAATTTTTCTATTTGTTCTTATAGTTTAATCGTTTTTGTGTTAAGACCTAATGTGTGAAGGAAGACTTGCTTGCTAGTTTGATCTAGGTCAACTCTGTATACTTTCAAATTAAAATTTTGATATTTCGAAAAATGTCACATGAATTGGGGAGGGGACAGTAGTTATAAGCAGAAAAGTGTTGTTCTAGTTTCTTTAATGCCATGAAATTTAGTTTATAGCCTTGTTGGATTGGGTGTTGGATTATGGGTTTGATAAGGTAAAGTGGGTTGAGAAATTTGACAGCAGAATTTAACTTTGCCTTTTATAGATGAATATTGAAAACAACAATTGAACTGGTGATATTGTCATTTAATCTTTTCTTAGTTAACTGGGAGAGTTTATTGCTGATGTTCAGTAACTTTGTAAAAGAAACTAGAGTAGCAGTTGCTCCCTAAAGTGTGACTTAACAGTTTGTAATCTTTAGTTCCAGGGAGAAGTTCGAGAATATTACCCTTTTTGGATTTGTGAACTTGAGGTGTCCCAAGTGTAATTTGTAAAGTGTAAACTAACTATTGTGTTCTTTTCGTTTTAGAATTTGTTACTCGTTTAAATTGCTCCTTTATAATGACAGGTTCTGATGGTGTAATATATCATTTTTTGAGTTTGTTTTATGGGTGACTTCTGTGAATAATCTTCCTTTTCATGCAATCGTTGCAGAGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAA</genome_strand>
        <mrna_strand>TCCATTACAATTTCCACATACTTTCTTCTTCATCAAGTCTCTTTGCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208936" ref_strand="+" ref_description="SGN-E208936 [cLEC-38-G17]">
      <seq>ttccacatactttcttcttcatcaagtctctttcctccatagacttatccccaaatatataaactcacccatcttaactatcgaaatacccatttcgattcttcactccttcgctagctttgttgcttcgagtatgggcaatctattgggctgtgtacaagttgatcaatccaccgtcgcaattacagagcagtttggcaagtatcaagatgtgcttcagccaggttgccactgcctgccttggtgcttcggattccagttagctggccatctctccctcagggtgcaacaattggatgttcgctgcgagacaaagacaaaggataatgtgtttgtcaatgttgtggcatcaattcagtaccgtgccctggcagacaaagcaaatgatgctttctacaaactaagcaacactaagggtcaaattcaggcctatgtttttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaaaaatgaaattgccaaggctgtcgaggatgaacttgagaaggctatgtcggcttatggatatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60096" stop="62352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60396" g_stop="60525" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60526" i_stop="61260" i_length="735">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61261" g_stop="61452" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="322" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61453" i_stop="61625" i_length="173">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61626" g_stop="61746" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="443" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61747" i_stop="61845" i_length="99">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61846" g_stop="61937" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="535" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61938" i_stop="62028" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62029" g_stop="62052" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="559" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E208936" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60396" e_stop="60525"/>
          <exon e_start="61261" e_stop="61452"/>
          <exon e_start="61626" e_stop="61746"/>
          <exon e_start="61846" e_stop="61937"/>
          <exon e_start="62029" e_stop="62052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCACATACTTTCTTCTTCATCAAGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCGGTATGTTTATGTACATATGCACATACTTTATACAATTTCAATTTTTCTATTTGTTCTTATAGTTTAATCGTTTTTGTGTTAAGACCTAATGTGTGAAGGAAGACTTGCTTGCTAGTTTGATCTAGGTCAACTCTGTATACTTTCAAATTAAAATTTTGATATTTCGAAAAATGTCACATGAATTGGGGAGGGGACAGTAGTTATAAGCAGAAAAGTGTTGTTCTAGTTTCTTTAATGCCATGAAATTTAGTTTATAGCCTTGTTGGATTGGGTGTTGGATTATGGGTTTGATAAGGTAAAGTGGGTTGAGAAATTTGACAGCAGAATTTAACTTTGCCTTTTATAGATGAATATTGAAAACAACAATTGAACTGGTGATATTGTCATTTAATCTTTTCTTAGTTAACTGGGAGAGTTTATTGCTGATGTTCAGTAACTTTGTAAAAGAAACTAGAGTAGCAGTTGCTCCCTAAAGTGTGACTTAACAGTTTGTAATCTTTAGTTCCAGGGAGAAGTTCGAGAATATTACCCTTTTTGGATTTGTGAACTTGAGGTGTCCCAAGTGTAATTTGTAAAGTGTAAACTAACTATTGTGTTCTTTTCGTTTTAGAATTTGTTACTCGTTTAAATTGCTCCTTTATAATGACAGGTTCTGATGGTGTAATATATCATTTTTTGAGTTTGTTTTATGGGTGACTTCTGTGAATAATCTTCCTTTTCATGCAATCGTTGCAGAGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAGGTCTATTCTTTATTCCGAAACAGTAATTCCATTGTTTTGACACAAGCTGTGTTGGTTCGCAGCCAAATCATCAAAGTCAACCACAATTTGCACTTTAACAAACATAACTAGGTGATGATTTTTCAGTATTTATGCATATTAATGACTTAATACATATTGCAACAAATGTGCAGGATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAA</genome_strand>
        <mrna_strand>TTCCACATACTTTCTTCTTCATCAAGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG.............................................................................................................................................................................GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG...........................................................................................GCTATGTCGGCTTATGGATATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208318" ref_strand="+" ref_description="SGN-E208318 [cLEC-37-E11]">
      <seq>ttccacatactttcttcttcatcaagtctctttcctgcatagacttatccccaaatatataaactcacccatcttaactatcgaaatacccatttcgattcttcactccttcgctagctgtgttgcttcgagtatgggcaatctattgggctgggtacaagttgatcaatccaccgtcgcaattacagagcaggttggccagtgtcaagatgtgcttcagccaggttgccactgcctgccttggtgcttcagattccagttagctggccatctctccctcagggtgcaacaattggatgttcgctgggagacaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60096" stop="61747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60396" g_stop="60525" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60526" i_stop="61260" i_length="735">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61261" g_stop="61447" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="317" r_length="187" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E208318" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60396" e_stop="60525"/>
          <exon e_start="61261" e_stop="61447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCACATACTTTCTTCTTCATCAAGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCGGTATGTTTATGTACATATGCACATACTTTATACAATTTCAATTTTTCTATTTGTTCTTATAGTTTAATCGTTTTTGTGTTAAGACCTAATGTGTGAAGGAAGACTTGCTTGCTAGTTTGATCTAGGTCAACTCTGTATACTTTCAAATTAAAATTTTGATATTTCGAAAAATGTCACATGAATTGGGGAGGGGACAGTAGTTATAAGCAGAAAAGTGTTGTTCTAGTTTCTTTAATGCCATGAAATTTAGTTTATAGCCTTGTTGGATTGGGTGTTGGATTATGGGTTTGATAAGGTAAAGTGGGTTGAGAAATTTGACAGCAGAATTTAACTTTGCCTTTTATAGATGAATATTGAAAACAACAATTGAACTGGTGATATTGTCATTTAATCTTTTCTTAGTTAACTGGGAGAGTTTATTGCTGATGTTCAGTAACTTTGTAAAAGAAACTAGAGTAGCAGTTGCTCCCTAAAGTGTGACTTAACAGTTTGTAATCTTTAGTTCCAGGGAGAAGTTCGAGAATATTACCCTTTTTGGATTTGTGAACTTGAGGTGTCCCAAGTGTAATTTGTAAAGTGTAAACTAACTATTGTGTTCTTTTCGTTTTAGAATTTGTTACTCGTTTAAATTGCTCCTTTATAATGACAGGTTCTGATGGTGTAATATATCATTTTTTGAGTTTGTTTTATGGGTGACTTCTGTGAATAATCTTCCTTTTCATGCAATCGTTGCAGAGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGA</genome_strand>
        <mrna_strand>TTCCACATACTTTCTTCTTCATCAAGTCTCTTTCCTGCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTGTGTTGCTTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGGGCAATCTATTGGGCTGGGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGGTTGGCCAGTGTCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCAGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGGGAGACAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205181" ref_strand="+" ref_description="SGN-E205181 [cLEC-16-N15]">
      <seq>agtctctttcctccatagacttatccccaaatatataaactcacccatcttaactatcgaaatacccatttcgattcttcactccttcgctagctttgttgcttcgagtatgggcaatctattgggctgtgtacaagttgatcaatccaccgtcgcaattacagagcagtttggcaagtatcaagatgtgcttcagccaggttgccactgcctgccttggtgcttcggattccagttagctggccatctctccctcagggtgcaacaattggatgttcgctgcgagacaaagacaaaggataatgtgtttgtcaatgttgtggcatcaattcagtaccgtgccctggcagacaaagcaaatgatgctttctacaaactaagcaacactaagggtcaaattcaggcctatgtttttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaaaaatgaaattgccaaggctgtcgaggatgaacttgagaaggctatgtcggcttatggatatgaaattgttcaaacactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60120" stop="62368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60420" g_stop="60525" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60526" i_stop="61260" i_length="735">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61261" g_stop="61452" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="298" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61453" i_stop="61625" i_length="173">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61626" g_stop="61746" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="419" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61747" i_stop="61845" i_length="99">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61846" g_stop="61937" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="511" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61938" i_stop="62028" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62029" g_stop="62068" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="551" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E205181" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60420" e_stop="60525"/>
          <exon e_start="61261" e_stop="61452"/>
          <exon e_start="61626" e_stop="61746"/>
          <exon e_start="61846" e_stop="61937"/>
          <exon e_start="62029" e_stop="62068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCGGTATGTTTATGTACATATGCACATACTTTATACAATTTCAATTTTTCTATTTGTTCTTATAGTTTAATCGTTTTTGTGTTAAGACCTAATGTGTGAAGGAAGACTTGCTTGCTAGTTTGATCTAGGTCAACTCTGTATACTTTCAAATTAAAATTTTGATATTTCGAAAAATGTCACATGAATTGGGGAGGGGACAGTAGTTATAAGCAGAAAAGTGTTGTTCTAGTTTCTTTAATGCCATGAAATTTAGTTTATAGCCTTGTTGGATTGGGTGTTGGATTATGGGTTTGATAAGGTAAAGTGGGTTGAGAAATTTGACAGCAGAATTTAACTTTGCCTTTTATAGATGAATATTGAAAACAACAATTGAACTGGTGATATTGTCATTTAATCTTTTCTTAGTTAACTGGGAGAGTTTATTGCTGATGTTCAGTAACTTTGTAAAAGAAACTAGAGTAGCAGTTGCTCCCTAAAGTGTGACTTAACAGTTTGTAATCTTTAGTTCCAGGGAGAAGTTCGAGAATATTACCCTTTTTGGATTTGTGAACTTGAGGTGTCCCAAGTGTAATTTGTAAAGTGTAAACTAACTATTGTGTTCTTTTCGTTTTAGAATTTGTTACTCGTTTAAATTGCTCCTTTATAATGACAGGTTCTGATGGTGTAATATATCATTTTTTGAGTTTGTTTTATGGGTGACTTCTGTGAATAATCTTCCTTTTCATGCAATCGTTGCAGAGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAGGTCTATTCTTTATTCCGAAACAGTAATTCCATTGTTTTGACACAAGCTGTGTTGGTTCGCAGCCAAATCATCAAAGTCAACCACAATTTGCACTTTAACAAACATAACTAGGTGATGATTTTTCAGTATTTATGCATATTAATGACTTAATACATATTGCAACAAATGTGCAGGATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTA</genome_strand>
        <mrna_strand>AGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG.............................................................................................................................................................................GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG...........................................................................................GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271770" ref_strand="+" ref_description="SGN-E271770 [cLEM-8-G9]">
      <seq>ttatccccaaatatataaactcacccatcttaactatcgaaatacccatttcgattcttgagtccttcgctagctttgttgcttcgagtatgggcaatctattgggctgtgtacaagttgatcaatccaccgtcgcaattacagagcagtttggcaagtatcaagatgtgcttcagccaggttgccactgcctgccttggtgcttcggattccagttagctggccatctctccctcagggtgcaacaattggatgttcgctgcgagacaaagacaaaggataatgtgtttgtcaatgttgtggcatcaattcagtaccgtgccctggcagacaaagcaaatgatgctttctacaaactaagcaacactaagggtcaaattcaggcctatgtttttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaaaaatgaaattgccaaggctgtcgaggatgaacttgagaaggctatgtcggcttatggatatgaaattgttcaaacacttatagttgatatagaaccagatgagaatgtgaagagagctatgaatgaaatcaatgctgctgctcggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60140" stop="62427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60440" g_stop="60525" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60526" i_stop="61260" i_length="735">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61261" g_stop="61452" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="278" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61453" i_stop="61625" i_length="173">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61626" g_stop="61746" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="399" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61747" i_stop="61845" i_length="99">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61846" g_stop="61937" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="491" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61938" i_stop="62028" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62029" g_stop="62125" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="588" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62126" i_stop="62358" i_length="233">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62359" g_stop="62367" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="597" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E271770" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60440" e_stop="60525"/>
          <exon e_start="61261" e_stop="61452"/>
          <exon e_start="61626" e_stop="61746"/>
          <exon e_start="61846" e_stop="61937"/>
          <exon e_start="62029" e_stop="62125"/>
          <exon e_start="62359" e_stop="62367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCGGTATGTTTATGTACATATGCACATACTTTATACAATTTCAATTTTTCTATTTGTTCTTATAGTTTAATCGTTTTTGTGTTAAGACCTAATGTGTGAAGGAAGACTTGCTTGCTAGTTTGATCTAGGTCAACTCTGTATACTTTCAAATTAAAATTTTGATATTTCGAAAAATGTCACATGAATTGGGGAGGGGACAGTAGTTATAAGCAGAAAAGTGTTGTTCTAGTTTCTTTAATGCCATGAAATTTAGTTTATAGCCTTGTTGGATTGGGTGTTGGATTATGGGTTTGATAAGGTAAAGTGGGTTGAGAAATTTGACAGCAGAATTTAACTTTGCCTTTTATAGATGAATATTGAAAACAACAATTGAACTGGTGATATTGTCATTTAATCTTTTCTTAGTTAACTGGGAGAGTTTATTGCTGATGTTCAGTAACTTTGTAAAAGAAACTAGAGTAGCAGTTGCTCCCTAAAGTGTGACTTAACAGTTTGTAATCTTTAGTTCCAGGGAGAAGTTCGAGAATATTACCCTTTTTGGATTTGTGAACTTGAGGTGTCCCAAGTGTAATTTGTAAAGTGTAAACTAACTATTGTGTTCTTTTCGTTTTAGAATTTGTTACTCGTTTAAATTGCTCCTTTATAATGACAGGTTCTGATGGTGTAATATATCATTTTTTGAGTTTGTTTTATGGGTGACTTCTGTGAATAATCTTCCTTTTCATGCAATCGTTGCAGAGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAGGTCTATTCTTTATTCCGAAACAGTAATTCCATTGTTTTGACACAAGCTGTGTTGGTTCGCAGCCAAATCATCAAAGTCAACCACAATTTGCACTTTAACAAACATAACTAGGTGATGATTTTTCAGTATTTATGCATATTAATGACTTAATACATATTGCAACAAATGTGCAGGATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTGGTATGGCTAAAATCTCATCTCTTTAGTTAAGCCTGATGCCTGCTGGTTCTCAACTGCTCTGACTAGTTAGTACTTTGTCCAAGAGGACTATATACATCAGTTGATGGAGGGGGCTACAGTGGGATTCGAACCCACCATCACTAGTGTGAAGGTGTGGGCAGCTCCCCAACTGAGCTACAAGCCACACTATAAAAGAGTATCTTTTCATGTCCTAATTGTTTTCAATTCTACAGCTGCTCGGC</genome_strand>
        <mrna_strand>TTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTGAGTCCTTCGCTAGCTTTGTTGCTTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG.............................................................................................................................................................................GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG...........................................................................................GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG.........................................................................................................................................................................................................................................CTGCTCGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205611" ref_strand="+" ref_description="SGN-E205611 [cLEC-21-F9]">
      <seq>ctcacccatcttaactatcgaaatacccatttcgattcttcactccttcgctagctttgttgcttcgagtatgggcaatctattgggctgtgtacaagttgatcaatccaccgtcgcaattacagagcagtttggcaagtatcaagatgtgcttcagccaggttgccactgcctgccttggtgcttcggattccagttagctggccatctctccctcagggtgcaacaattggatgttcgctgcgagacaaagacaaaggataatgtgtttgtcaatgttgtggcatcaattcagtaccgtgccctggcagacaaagcaaatgatgctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60159" stop="61997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60459" g_stop="60525" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60526" i_stop="61260" i_length="735">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61261" g_stop="61452" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="259" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61453" i_stop="61625" i_length="173">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61626" g_stop="61697" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="331" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E205611" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60459" e_stop="60525"/>
          <exon e_start="61261" e_stop="61452"/>
          <exon e_start="61626" e_stop="61697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCGGTATGTTTATGTACATATGCACATACTTTATACAATTTCAATTTTTCTATTTGTTCTTATAGTTTAATCGTTTTTGTGTTAAGACCTAATGTGTGAAGGAAGACTTGCTTGCTAGTTTGATCTAGGTCAACTCTGTATACTTTCAAATTAAAATTTTGATATTTCGAAAAATGTCACATGAATTGGGGAGGGGACAGTAGTTATAAGCAGAAAAGTGTTGTTCTAGTTTCTTTAATGCCATGAAATTTAGTTTATAGCCTTGTTGGATTGGGTGTTGGATTATGGGTTTGATAAGGTAAAGTGGGTTGAGAAATTTGACAGCAGAATTTAACTTTGCCTTTTATAGATGAATATTGAAAACAACAATTGAACTGGTGATATTGTCATTTAATCTTTTCTTAGTTAACTGGGAGAGTTTATTGCTGATGTTCAGTAACTTTGTAAAAGAAACTAGAGTAGCAGTTGCTCCCTAAAGTGTGACTTAACAGTTTGTAATCTTTAGTTCCAGGGAGAAGTTCGAGAATATTACCCTTTTTGGATTTGTGAACTTGAGGTGTCCCAAGTGTAATTTGTAAAGTGTAAACTAACTATTGTGTTCTTTTCGTTTTAGAATTTGTTACTCGTTTAAATTGCTCCTTTATAATGACAGGTTCTGATGGTGTAATATATCATTTTTTGAGTTTGTTTTATGGGTGACTTCTGTGAATAATCTTCCTTTTCATGCAATCGTTGCAGAGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAGGTCTATTCTTTATTCCGAAACAGTAATTCCATTGTTTTGACACAAGCTGTGTTGGTTCGCAGCCAAATCATCAAAGTCAACCACAATTTGCACTTTAACAAACATAACTAGGTGATGATTTTTCAGTATTTATGCATATTAATGACTTAATACATATTGCAACAAATGTGCAGGATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTC</genome_strand>
        <mrna_strand>CTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG.............................................................................................................................................................................GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290060" ref_strand="+" ref_description="SGN-E290060 [cLET-5-G12]">
      <seq>cactccttcgctagctttgttgcttcgagtatgggcaatctattgggctgtgtacaagttgatcaatccaccgtcgcaattacagagcagtttggcaagtatcaagatgtgcttcagccaggttgccactgcctgccttggtgcttcggattccagttagctggccatctctccctcagggtgcaacaattggatgttcgctgcgagacaaagacaaaggataatgtgtttgtcaatgttgtggcatcaattcagtaccgtgccctggcagacaaagcaaatgatgctttctacaaactaagcaacactaagggtcaaattcaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60199" stop="62031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60499" g_stop="60525" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60526" i_stop="61260" i_length="735">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61261" g_stop="61452" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="219" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61453" i_stop="61625" i_length="173">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61626" g_stop="61732" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="326" r_length="107" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E290060" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60499" e_stop="60525"/>
          <exon e_start="61261" e_stop="61452"/>
          <exon e_start="61626" e_stop="61732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCCTTCGCTAGCTTTGTTGCTTCGGTATGTTTATGTACATATGCACATACTTTATACAATTTCAATTTTTCTATTTGTTCTTATAGTTTAATCGTTTTTGTGTTAAGACCTAATGTGTGAAGGAAGACTTGCTTGCTAGTTTGATCTAGGTCAACTCTGTATACTTTCAAATTAAAATTTTGATATTTCGAAAAATGTCACATGAATTGGGGAGGGGACAGTAGTTATAAGCAGAAAAGTGTTGTTCTAGTTTCTTTAATGCCATGAAATTTAGTTTATAGCCTTGTTGGATTGGGTGTTGGATTATGGGTTTGATAAGGTAAAGTGGGTTGAGAAATTTGACAGCAGAATTTAACTTTGCCTTTTATAGATGAATATTGAAAACAACAATTGAACTGGTGATATTGTCATTTAATCTTTTCTTAGTTAACTGGGAGAGTTTATTGCTGATGTTCAGTAACTTTGTAAAAGAAACTAGAGTAGCAGTTGCTCCCTAAAGTGTGACTTAACAGTTTGTAATCTTTAGTTCCAGGGAGAAGTTCGAGAATATTACCCTTTTTGGATTTGTGAACTTGAGGTGTCCCAAGTGTAATTTGTAAAGTGTAAACTAACTATTGTGTTCTTTTCGTTTTAGAATTTGTTACTCGTTTAAATTGCTCCTTTATAATGACAGGTTCTGATGGTGTAATATATCATTTTTTGAGTTTGTTTTATGGGTGACTTCTGTGAATAATCTTCCTTTTCATGCAATCGTTGCAGAGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAGGTCTATTCTTTATTCCGAAACAGTAATTCCATTGTTTTGACACAAGCTGTGTTGGTTCGCAGCCAAATCATCAAAGTCAACCACAATTTGCACTTTAACAAACATAACTAGGTGATGATTTTTCAGTATTTATGCATATTAATGACTTAATACATATTGCAACAAATGTGCAGGATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGC</genome_strand>
        <mrna_strand>CACTCCTTCGCTAGCTTTGTTGCTTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG.............................................................................................................................................................................GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207374" ref_strand="+" ref_description="SGN-E207374 [cLEC-36-C22]">
      <seq>tccttcgctagctttgttgcttcgagtatgggcaatctattgggctgtgtacaagttgatcaatccaccgtcgcaattacagagcagtttggcaagtatcaagatgtgcttcagccaggttgccactgcctgccttggtgcttcggattccagttagctggccatctctccctcagggtgcaacaattggatgttcgctgcgagacaaagacaaaggataatgtgtttgtcaatgttgtggcatcaattcagtaccgtgccctggcagacaaagcaaatgatgctttctacaaactaagcaacactaagggtcaaattcaggcctatgtttttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaaaaatgaaattgccaaggctgtcgaggatgaacttgagaaggctatgtcggcttatggatatgaaattgttcaaacacttatagttgatatagaaccagatgagaatgtgaagagagctatgaatgaaatcaatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60202" stop="62425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60502" g_stop="60525" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60526" i_stop="61260" i_length="735">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61261" g_stop="61452" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="216" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61453" i_stop="61625" i_length="173">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61626" g_stop="61746" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="337" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61747" i_stop="61845" i_length="99">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61846" g_stop="61937" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="429" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61938" i_stop="62028" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62029" g_stop="62125" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="526" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E207374" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60502" e_stop="60525"/>
          <exon e_start="61261" e_stop="61452"/>
          <exon e_start="61626" e_stop="61746"/>
          <exon e_start="61846" e_stop="61937"/>
          <exon e_start="62029" e_stop="62125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCGCTAGCTTTGTTGCTTCGGTATGTTTATGTACATATGCACATACTTTATACAATTTCAATTTTTCTATTTGTTCTTATAGTTTAATCGTTTTTGTGTTAAGACCTAATGTGTGAAGGAAGACTTGCTTGCTAGTTTGATCTAGGTCAACTCTGTATACTTTCAAATTAAAATTTTGATATTTCGAAAAATGTCACATGAATTGGGGAGGGGACAGTAGTTATAAGCAGAAAAGTGTTGTTCTAGTTTCTTTAATGCCATGAAATTTAGTTTATAGCCTTGTTGGATTGGGTGTTGGATTATGGGTTTGATAAGGTAAAGTGGGTTGAGAAATTTGACAGCAGAATTTAACTTTGCCTTTTATAGATGAATATTGAAAACAACAATTGAACTGGTGATATTGTCATTTAATCTTTTCTTAGTTAACTGGGAGAGTTTATTGCTGATGTTCAGTAACTTTGTAAAAGAAACTAGAGTAGCAGTTGCTCCCTAAAGTGTGACTTAACAGTTTGTAATCTTTAGTTCCAGGGAGAAGTTCGAGAATATTACCCTTTTTGGATTTGTGAACTTGAGGTGTCCCAAGTGTAATTTGTAAAGTGTAAACTAACTATTGTGTTCTTTTCGTTTTAGAATTTGTTACTCGTTTAAATTGCTCCTTTATAATGACAGGTTCTGATGGTGTAATATATCATTTTTTGAGTTTGTTTTATGGGTGACTTCTGTGAATAATCTTCCTTTTCATGCAATCGTTGCAGAGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAGGTCTATTCTTTATTCCGAAACAGTAATTCCATTGTTTTGACACAAGCTGTGTTGGTTCGCAGCCAAATCATCAAAGTCAACCACAATTTGCACTTTAACAAACATAACTAGGTGATGATTTTTCAGTATTTATGCATATTAATGACTTAATACATATTGCAACAAATGTGCAGGATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG</genome_strand>
        <mrna_strand>TCCTTCGCTAGCTTTGTTGCTTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG.............................................................................................................................................................................GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG...........................................................................................GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212055" ref_strand="+" ref_description="SGN-E212055 [cLEC-75-A1]">
      <seq>tgcttcgagtatgggcaatctattgggctgtgtacaagttgatcaatccaccgtcgcaattacagagcagtttggcaagtatcaagatgtgcttcagccaggttgccactgcctgccttggtgcttcggattccagttagctggccatctctccctcagggtgcaacaattggatgttcgctgcgagacaaagacaaaggataatgtgtttgtcaatgttgtggcatcaattcagtaccgtgccctggcagacaaagcaaatgatgctttctacaaactaagcaacactaagggtcaaattcaggcctatgtttttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaaaaatgaaattgccaaggctgtcgaggatgaacttgagaaggctatgtcggcttatggatatgaaattgttcaaacacttatagttgatatagaaccagatgagaatgtgaagagagctatgaatgaaatcaatgctgctgctcggctgagggtggctgctaatgagaaagcagaggcggagaagattttgcaaattaagagggctgaaggagaggcagaatcaaagtatctttcagggttaggtattgcacgacagcgtcaagcgattgtggatggtttgagagacagcgtgctcggattctcagtgaatgtgcctggaacctcagcaaaagatgtaatggacatggtccttttaacccagtactttgacaccatgaaaagaattggcgcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60955" stop="62914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61261" g_stop="61452" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="199" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61453" i_stop="61625" i_length="173">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61626" g_stop="61746" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="320" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61747" i_stop="61845" i_length="99">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61846" g_stop="61937" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="412" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61938" i_stop="62028" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62029" g_stop="62125" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="509" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62126" i_stop="62358" i_length="233">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62359" g_stop="62614" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="765" r_length="256" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E212055" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61261" e_stop="61452"/>
          <exon e_start="61626" e_stop="61746"/>
          <exon e_start="61846" e_stop="61937"/>
          <exon e_start="62029" e_stop="62125"/>
          <exon e_start="62359" e_stop="62614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAGGTCTATTCTTTATTCCGAAACAGTAATTCCATTGTTTTGACACAAGCTGTGTTGGTTCGCAGCCAAATCATCAAAGTCAACCACAATTTGCACTTTAACAAACATAACTAGGTGATGATTTTTCAGTATTTATGCATATTAATGACTTAATACATATTGCAACAAATGTGCAGGATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTGGTATGGCTAAAATCTCATCTCTTTAGTTAAGCCTGATGCCTGCTGGTTCTCAACTGCTCTGACTAGTTAGTACTTTGTCCAAGAGGACTATATACATCAGTTGATGGAGGGGGCTACAGTGGGATTCGAACCCACCATCACTAGTGTGAAGGTGTGGGCAGCTCCCCAACTGAGCTACAAGCCACACTATAAAAGAGTATCTTTTCATGTCCTAATTGTTTTCAATTCTACAGCTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTC</genome_strand>
        <mrna_strand>AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG.............................................................................................................................................................................GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG...........................................................................................GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG.........................................................................................................................................................................................................................................CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAAGAATTGGCGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728362" ref_strand="+" ref_description="SGN-E728362 [LA17CD02]">
      <seq>gcaatctattgggctgtgtacaagttgatcaatccaccgtcgcacttacagagcagtttggcaagtatcaagatgtgcttcagccaggttgccactgcctgccttggtgcttcggattccagttagctggccatctctccctcagggtgcaacaattggatgttcgctgcgagacaaagacaaaggataatgtgtttgtcaatgttgtggcatcaattcagtaccgtgccctggcagacaaagcaaatgatgctttctacaaactaagcaacactaagggtcaaattcaggcctatgtttttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaaaaatgaaattgccaaggctgtcgaggatgaacttgagaaggctatgtcggcttatggatatgaaattgttcaaacacttatagttgatatagaaccagatgagaatgtgaagagagctatgaatgaaatcaatgctgctgctcggctgagggtggctgctaatgagaaagcagaggcggagaagattttgcaaattaagagggctgaaggagaggcagaatcaaagtatctttcagggttaggtattgcacgacagcgtcaagcgattgtggatggtttgagagacagcgtgttcggattctcagtgaatgtgcctggaacctcagcaaaagatgtaatggacatggtccttttaacccagtactttgacaccatgaaagaaattggcgcttccagtaaatcatctgctgtcttccttcctcatgggcctggtgctgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60968" stop="62960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61268" g_stop="61452" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61453" i_stop="61625" i_length="173">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61626" g_stop="61746" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="306" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61747" i_stop="61845" i_length="99">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61846" g_stop="61937" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="398" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61938" i_stop="62028" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62029" g_stop="62125" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="495" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62126" i_stop="62358" i_length="233">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62359" g_stop="62660" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="797" r_length="302" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E728362" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61268" e_stop="61452"/>
          <exon e_start="61626" e_stop="61746"/>
          <exon e_start="61846" e_stop="61937"/>
          <exon e_start="62029" e_stop="62125"/>
          <exon e_start="62359" e_stop="62660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAGGTCTATTCTTTATTCCGAAACAGTAATTCCATTGTTTTGACACAAGCTGTGTTGGTTCGCAGCCAAATCATCAAAGTCAACCACAATTTGCACTTTAACAAACATAACTAGGTGATGATTTTTCAGTATTTATGCATATTAATGACTTAATACATATTGCAACAAATGTGCAGGATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTGGTATGGCTAAAATCTCATCTCTTTAGTTAAGCCTGATGCCTGCTGGTTCTCAACTGCTCTGACTAGTTAGTACTTTGTCCAAGAGGACTATATACATCAGTTGATGGAGGGGGCTACAGTGGGATTCGAACCCACCATCACTAGTGTGAAGGTGTGGGCAGCTCCCCAACTGAGCTACAAGCCACACTATAAAAGAGTATCTTTTCATGTCCTAATTGTTTTCAATTCTACAGCTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTA</genome_strand>
        <mrna_strand>GCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCACTTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG.............................................................................................................................................................................GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG...........................................................................................GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG.........................................................................................................................................................................................................................................CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGTTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274295" ref_strand="+" ref_description="SGN-E274295 [cLEN-15-P14]">
      <seq>gtcaatgttgtcgcatcaattcagtatcgtgccattgccgacaaagcaaatgaagctttctacaagctaagtaacactaagggtcagattcaggcatatgtttttgatgtcataagagctagtgttcctaaactcattcttgatgatgtgtttgagcaaaaaaatgaaattgccaaggctggtgaggaggaacttgagaaagctatgtcagcttatggatatgaaattgttcagacactcatcgttgatatagtaccagatgagcatgtgaagagagctatgaatgaaatcaatgctgctgctcggctgagggtggctgctaatgagaaggcagaggccgagaagatcttgcaaattaagagggctgaaggagaggccgagtctaagtatctgtcaggattaggtattgcacgacaacgtcaagcaattgtggatggtctgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61521" stop="62804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61638" g_stop="61746" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61747" i_stop="61845" i_length="99">
            <donor d_prob="0.824" d_score="0.92"/>
            <acceptor a_prob="0.950" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61846" g_stop="61937" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="201" r_length="92" r_score="0.880"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61938" i_stop="62028" i_length="91">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.947" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62029" g_stop="62125" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="298" r_length="97" r_score="0.938"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62126" i_stop="62358" i_length="233">
            <donor d_prob="0.788" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62359" g_stop="62504" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="444" r_length="146" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E274295" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61638" e_stop="61746"/>
          <exon e_start="61846" e_stop="61937"/>
          <exon e_start="62029" e_stop="62125"/>
          <exon e_start="62359" e_stop="62504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTGGTATGGCTAAAATCTCATCTCTTTAGTTAAGCCTGATGCCTGCTGGTTCTCAACTGCTCTGACTAGTTAGTACTTTGTCCAAGAGGACTATATACATCAGTTGATGGAGGGGGCTACAGTGGGATTCGAACCCACCATCACTAGTGTGAAGGTGTGGGCAGCTCCCCAACTGAGCTACAAGCCACACTATAAAAGAGTATCTTTTCATGTCCTAATTGTTTTCAATTCTACAGCTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGA</genome_strand>
        <mrna_strand>GTCAATGTTGTCGCATCAATTCAGTATCGTGCCATTGCCGACAAAGCAAATGAAGCTTTCTACAAGCTAAGTAACACTAAGGGTCAGATTCAGGCATATGTTTTTGATG...................................................................................................TCATAAGAGCTAGTGTTCCTAAACTCATTCTTGATGATGTGTTTGAGCAAAAAAATGAAATTGCCAAGGCTGGTGAGGAGGAACTTGAGAAA...........................................................................................GCTATGTCAGCTTATGGATATGAAATTGTTCAGACACTCATCGTTGATATAGTACCAGATGAGCATGTGAAGAGAGCTATGAATGAAATCAATGCTG.........................................................................................................................................................................................................................................CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAGGCAGAGGCCGAGAAGATCTTGCAAATTAAGAGGGCTGAAGGAGAGGCCGAGTCTAAGTATCTGTCAGGATTAGGTATTGCACGACAACGTCAAGCAATTGTGGATGGTCTGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244180" ref_strand="+" ref_description="SGN-E244180 [cLEE-1-D2]">
      <seq>cagacaaagcaaatgatgctttctacaaactaagcaacactaagggtcaaattcaggcctatgtttttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaaaaatgaaattgccaaggctgtcgaggatgaacttgagaaggctatgtcggcttatggatatgaaattgttcaaacacttatagttgatatagaaccagatgagaatgtgaagagagctatgaatgaaatcaatgctgctgctcggctgagggtggctgctaatgagaaagcagaggcggagaagattttgcaaattaagagggctgaaggagaggcagaatcaaagtatctttcagggttaggtattgcacgacagcgtcaagcgattgtggatggtttgagagacagcgtgctcggattctcagtgaatgtgcctggaacctcagcaaaagatgtaatggacatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61375" stop="62869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61675" g_stop="61746" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61747" i_stop="61845" i_length="99">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61846" g_stop="61937" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="164" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61938" i_stop="62028" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62029" g_stop="62125" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="261" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62126" i_stop="62358" i_length="233">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62359" g_stop="62569" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="472" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E244180" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61675" e_stop="61746"/>
          <exon e_start="61846" e_stop="61937"/>
          <exon e_start="62029" e_stop="62125"/>
          <exon e_start="62359" e_stop="62569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTGGTATGGCTAAAATCTCATCTCTTTAGTTAAGCCTGATGCCTGCTGGTTCTCAACTGCTCTGACTAGTTAGTACTTTGTCCAAGAGGACTATATACATCAGTTGATGGAGGGGGCTACAGTGGGATTCGAACCCACCATCACTAGTGTGAAGGTGTGGGCAGCTCCCCAACTGAGCTACAAGCCACACTATAAAAGAGTATCTTTTCATGTCCTAATTGTTTTCAATTCTACAGCTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGT</genome_strand>
        <mrna_strand>CAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG...........................................................................................GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG.........................................................................................................................................................................................................................................CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371197" ref_strand="+" ref_description="SGN-E371197 [TUS-28-F19](-)">
      <seq>gggtcaaattcaggcctaatgtttttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaaaaatgaaattgccaaggctgtcgaggatgaacttgagaaggctatgtcggcttatggatatgaaattgttcaaacacttatagttgatatagaaccagatgagaatgtgaagagagctatgaatgaaatcaatgctgctgctcggctgagggtggctgctaatgagaaagcagaggcggagaagattttgcaaattaagagggctgaaggagaggcagaatcaaagtatctttcagggttaggtattgcacgacagcgtcaagcgattgtggatggtttgagagacagcgtgctcggattctcagtgaatgtgcctggaacctcagcaaaagatgtaatggacatggtccttttaacccagtactttgacaccatgaaagaaattggcgcttccagtaaatcatctgctgtcttccttcctcatgggcctggtgctgtaagagatgtggcaagccagatccgcgatggactccttcaagcttctgtgaaccattaaatgtttctactatatcagaaatgttaattgtgtttcacttgaagcagcctttttcattttgtgtttactttctgttagtgtggatatgtttggcgagtttgactttgtatttgtgaatgcctctagtatcttatattgtaaagaatttaatatcccagacctttgaagaattatatactattaatagatggatgtgatatttctcctcgttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61418" stop="63230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61718" g_stop="61746" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61747" i_stop="61845" i_length="99">
            <donor d_prob="0.824" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61846" g_stop="61937" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="122" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61938" i_stop="62028" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62029" g_stop="62125" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="219" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62126" i_stop="62358" i_length="233">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62359" g_stop="62936" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="797" r_length="578" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E371197" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61718" e_stop="61746"/>
          <exon e_start="61846" e_stop="61937"/>
          <exon e_start="62029" e_stop="62125"/>
          <exon e_start="62359" e_stop="62936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTCAAATTCAGGCCT-ATGTTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTGGTATGGCTAAAATCTCATCTCTTTAGTTAAGCCTGATGCCTGCTGGTTCTCAACTGCTCTGACTAGTTAGTACTTTGTCCAAGAGGACTATATACATCAGTTGATGGAGGGGGCTACAGTGGGATTCGAACCCACCATCACTAGTGTGAAGGTGTGGGCAGCTCCCCAACTGAGCTACAAGCCACACTATAAAAGAGTATCTTTTCATGTCCTAATTGTTTTCAATTCTACAGCTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTAATTGTAC</genome_strand>
        <mrna_strand>GGGTCAAATTCAGGCCTAATGTTTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG...........................................................................................GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG.........................................................................................................................................................................................................................................CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352178" ref_strand="+" ref_description="SGN-E352178 [cTOS-13-I6]">
      <seq>tttttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaaaaatgaaattgccaaggctgtcgaggatgaacttgagaaggctatgtcggcttatggatatgaaattgttcaaacacttatagttgatatagaaccagatgagaatgtgaagagagctatgaatgaaatcaatgctgctgctcggctgagggtggctgctaatgagaaagcagaggcggagaagattttgcaaattaagagggctgaaggagaggcagaatcaaagtatctttcagggttaggtattgcacgacagcgtcaagcgattgtggatggtttgagagacagcgtgctcggattctcagtgaatgtgcctggaacctcagcaaaagatgtaatggacatggtccttttaacccagtactttgacaccatgaaagaaattggcgcttccagtaaatcatctgctgtcttccttcctcatgggcctggtgctgtaagagatgtggcaagccagatccgcgatggactccttcaagcttctgtgaaccattaaatgtttctactatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61538" stop="63033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61738" g_stop="61746" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61747" i_stop="61845" i_length="99">
            <donor d_prob="0.824" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61846" g_stop="61937" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="101" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61938" i_stop="62028" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62029" g_stop="62125" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="198" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62126" i_stop="62358" i_length="233">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62359" g_stop="62733" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="573" r_length="375" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E352178" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61738" e_stop="61746"/>
          <exon e_start="61846" e_stop="61937"/>
          <exon e_start="62029" e_stop="62125"/>
          <exon e_start="62359" e_stop="62733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTGGTATGGCTAAAATCTCATCTCTTTAGTTAAGCCTGATGCCTGCTGGTTCTCAACTGCTCTGACTAGTTAGTACTTTGTCCAAGAGGACTATATACATCAGTTGATGGAGGGGGCTACAGTGGGATTCGAACCCACCATCACTAGTGTGAAGGTGTGGGCAGCTCCCCAACTGAGCTACAAGCCACACTATAAAAGAGTATCTTTTCATGTCCTAATTGTTTTCAATTCTACAGCTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATC</genome_strand>
        <mrna_strand>TTTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG...........................................................................................GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG.........................................................................................................................................................................................................................................CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370708" ref_strand="+" ref_description="SGN-E370708 [TUS-28-F20](-)">
      <seq>aggctatgtcggcttatggatatgaaattgttcaaacacttatagttgatatagaaccagatgagaatgtgaagagagctatgaatgaaatcaatgctgctgctcggctgagggtggctgctaatgagaaagcagaggcggagaagattttgcaaattaagagggctgaaggagaggcagaatcaaagtatctttcagggttaggtattgcacgacagcgtcaagcgattgtggatggtttgagagacagcgtgctcggattctcagtgaatgtgcctggaacctcagcaaaagatgtaatggacatggtccttttaacccagtactttgacaccatgaaagaaattggcgcttccagtaaatcatctgctgtcttccttcctcatgggcctggtgctgtaagagatgtggcaagccagatccgcgatggactccttcaagcttctgtgaaccattaaatgtttctactatatcagaaatgttaattgtgtttcacttgaagcagcctttttcattttgtgtttactttctgttagtgtggatatgtttggcgagtttgactttgtatttgtgaatgcctctagtatcttatattgtaaagaatttaatatcccagacctttgaagaattatatactattaatagatggatgtgatatttctcctcgttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61727" stop="63230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62027" g_stop="62125" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62126" i_stop="62358" i_length="233">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62359" g_stop="62936" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="677" r_length="578" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E370708" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62027" e_stop="62125"/>
          <exon e_start="62359" e_stop="62936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTGGTATGGCTAAAATCTCATCTCTTTAGTTAAGCCTGATGCCTGCTGGTTCTCAACTGCTCTGACTAGTTAGTACTTTGTCCAAGAGGACTATATACATCAGTTGATGGAGGGGGCTACAGTGGGATTCGAACCCACCATCACTAGTGTGAAGGTGTGGGCAGCTCCCCAACTGAGCTACAAGCCACACTATAAAAGAGTATCTTTTCATGTCCTAATTGTTTTCAATTCTACAGCTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTAATTGTAC</genome_strand>
        <mrna_strand>AGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG.........................................................................................................................................................................................................................................CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353158" ref_strand="+" ref_description="SGN-E353158 [cTOS-14-M1]">
      <seq>aattgttcaaacacttatagttgatatagaaccagatgagaatgtgaagagagctatgaatgaaatcaatgctgctgctcggctgagggtggctgctaatgagaaagcagaggcggagaagattttgcaaattaagagggctgaaggagaggcagaatcaaagtatctttcagggttaggtattgcacgacagcgtcaagcgattgtggatggtttgagagacagcgtgctcggattctcagtgaatgtgcctggaacctcagcaaaagatgtaatggacatggtccttttaacccagtactttgacaccatgaaagaaattggcgcttccagtaaatcatctgctgtcttccttcctcatgggcctggtgctgtaagagatgtggcaagccagatccgcgatggactccttcaagcttctgtgaaccattaaatgtttctactatatcagaaatgttaattgtgtttcacttgaagcagcctttttcattttgtgtttactttctgttagtgtggatatgtttggcgagtttgactttgtatttgtgaatgcctctagtatcttatattgtnaagaattaatatccccagaccttgaagaattatatactattaatagatggatgtgatantttctccctcgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61752" stop="63230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62052" g_stop="62125" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62126" i_stop="62358" i_length="233">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62359" g_stop="62939" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="656" r_length="582" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E353158" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62052" e_stop="62125"/>
          <exon e_start="62359" e_stop="62939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTGGTATGGCTAAAATCTCATCTCTTTAGTTAAGCCTGATGCCTGCTGGTTCTCAACTGCTCTGACTAGTTAGTACTTTGTCCAAGAGGACTATATACATCAGTTGATGGAGGGGGCTACAGTGGGATTCGAACCCACCATCACTAGTGTGAAGGTGTGGGCAGCTCCCCAACTGAGCTACAAGCCACACTATAAAAGAGTATCTTTTCATGTCCTAATTGTTTTCAATTCTACAGCTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATAT-CCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATA-TTTCT-CCTCGTTAATTGTACCTG</genome_strand>
        <mrna_strand>AATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG.........................................................................................................................................................................................................................................CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTNAAGAA-TTAATATCCCCAGACC-TTGAAGAATTATATACTATTAATAGATGGATGTGATANTTTCTCCCTCGTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343357" ref_strand="+" ref_description="SGN-E343357 [cTOF-19-G11]">
      <seq>ctgctcggctgagggtggctgctaatgagaaagcagaggcggagaagattttgcaaattaagagggctgaaggagaggcagaatcaaagtatctttcagggttaggtattgcacgacagcgtcaagcgattgtggatggtttgagagacagcgtgctcggattctcagtgaatgtgcctggaacctcagcaaaagatgtaatggacatggtccttttaacccagtactttgacaccatgaaagaaattggcgcttccagtaaatcatctgctgtcttccttcctcatgggcctggtgctgtaagagatgtggcaagccagatccgcgatggactccttcaagcttctgtgaaccattaaatgtttctactatatcagaaatgttaattgtgtttcacttgaagcagcctttttcattttgtgtttactttctgttagtgtggatatgtttggcgagtttgactttgtatttgtgaatgcctctagtatcttatattgtaaagaatttaatatcccagacctttgaagaattatatactattaatagatggatgtgatattttctcctcgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62059" stop="63230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62359" g_stop="62938" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E343357" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62359" e_stop="62938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATA-TTTCTCCTCGTTAATTGTACCT</genome_strand>
        <mrna_strand>CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTTCTCCTCGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349761" ref_strand="-" ref_description="SGN-E349761 [cTOS-3-K18]">
      <seq>gagaaagcagaggcggagaagattttgcaaattaagagggctgaaggagaggcagaatcaaagtatctttcagggttaggtattgcacgacagcgtcaagcgattgtggatggtttgagagacagcgtgctcggattctcagtgaatgtgcctggaacctcagcaaaagatgtaatggacatggtccttttaacccagtactttgacaccatgaaagaaattggcgcttccagtaaatcatctgctgtcttccttcctcatgggcctggtgctgtaagagatgtggcaagccagatccgcgatggactccttcaagcttctgtgaaccattaaatgtttctactatatcagaaatgttaattgtgtttcacttgaagcagcctttttcattttgtgtttactttctgttagtgtggatatgtttggcgagtttgactttgtatttgtgaatgcctctagtatcttatattgtaaagaatttaatatcccagacctttgaagaattatatactattaatagatggatgtgatatttctcctcgttaaaaaaaaaaaaaaaaaaaactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62085" stop="63230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62385" g_stop="62929" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="546" polyA_stop="565"/>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E349761" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349761" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62385" e_stop="62929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTA</genome_strand>
        <mrna_strand>GAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351943" ref_strand="-" ref_description="SGN-E351943 [cTOS-8-J14]">
      <seq>gagaaagcagaggcggagaagattttgcaaattaagagggctgaaggagaggcagaatcaaagtatctttcagggttaggtattgcacgacagcgtcaagcgattgtggatggtttgagagacagcgtgctcggattctcagtgaatgtgcctggaacctcagcaaaagatgtaatggacatggtccttttaacccagtactttgacaccatgaaagaaattggcgcttccagtaaatcatctgctgtcttccttcctcatgggcctggtgctgtaagagatgtggcaagccagatccgcgatggactccttcaagcttctgtgaaccattaaatgtttctactatatcagaaatgttaattgtgtttcacttgaagcagcctttttcattttgtgtttactttctgttagtgtggatatgtttggcgagtttgactttgtatttgtgaatgcctctagtatcttatattgtaaagaatttaatatcccagacctttgaagaattatatactattaatagatggatgtgatatttctcctcgttaaaaaaaaaaaaaaaaaaaactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62085" stop="63230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62385" g_stop="62929" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="546" polyA_stop="565"/>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E351943" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351943" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62385" e_stop="62929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTA</genome_strand>
        <mrna_strand>GAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355309" ref_strand="+" ref_description="SGN-E355309 [cTOS-18-O3]">
      <seq>agaggcagaatcaaagtatctttcagggttaggtattgcacgacagcgtcaagcgattgtggatggtttgagagacagcgtgctcggattctcagtgaatgtgcctggaacctcagcaaaagatgtaatggacatggtccttttaacccagtactttgacaccatgaaagaaattggcgcttccagtaaatcatctgctgtcttccttcctcatgggcctggtgctgtaagagatgtggcaagccagatccgcgatggactccttcaagcttctgtgaaccattaaatgtttctactatatcagaaatgttaattgtgtttcacttgaagcagcctttttcattttgtgtttactttctgttagtgtggatatgtttggcgagtttgactttgtatttgtgaatgcctctagtatcttatattgtaaagaatttaatatcccagacctttgaagaattatatactattaatagatggatgtgatatttctcctcgttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62132" stop="63230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62432" g_stop="62929" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="499" polyA_stop="510"/>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E355309" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62432" e_stop="62929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTA</genome_strand>
        <mrna_strand>AGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278994" ref_strand="-" ref_description="SGN-E278994 [cLER-2-B22]">
      <seq>atggtttgagagacagcgtgctcggattctcagtgaatgtgcctggaacctcagcaaaagatgtaatggacatggtccttttaacccagtactttgacaccatgaaagaaattggcgcttccagtaaatcatctgctgtcttccttcctcatgggcctggtgctgtaagagatgtggcaagccagatccgcgatggactccttcaagcttctgtgaaccattaaatgtttctactatatcagaaatgttaattgtgtttcacttgaagcagcctttttcattttgtgtttactttctgttagtgtggatatgtttggcgagtttgactttgtatttgtgaatgcctctagtatcttatattgtaaagaatttaatatcccagacctttgaagaattatatactattaatagatggatgtgatatttctcctaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62194" stop="63224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62494" g_stop="62925" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="433" polyA_stop="450"/>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E278994" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278994" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62494" e_stop="62925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTC</genome_strand>
        <mrna_strand>ATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738515" ref_strand="+" ref_description="SGN-E738515 [LC13DG08]">
      <seq>cgttaccttgaggttgaaaacggtggcactgcccctcgtattcactcaatggatgagtacttcatgactgaagttgacaaggttgaggagagtgaggttttgcgatcttctggttctgtcaggggcaaaaagatggtgacaaagaaggttatcgaatactgctatgaacctgagatggaggaggcttatcgttcaagcatgttgaaggctttcaaaaagaccctggatgagggggctttctccttcgtaattggtatggtatttttggggcaagatagctcttactctgtaattccacatatcttctttttgtccataatctcagactgacatgtgaaatggtttgcatcactgtttcctctttcagctggatgtctattcttttgtttattgtgtctgtgagattctccaaaatttgctagtgaaatgattacatgctgctgtcagttgttttcttgtgtcatctgttgctctctattggagcatatttctatagaaaacctccattttgttggatttaggaaacttgaaggtaggtagcatcccataggtttcttgataatagctagcacattggttcttcaagtcatgatagattgtctagttaaaatgtcacccatagtttaattatagattaagtggtgatgcagtgccttgcactgccttcagtttactaactacagatgcagttttgttcggcaattgacccatttgttgctggtatttgtgcctcatcttagtggatgaccgcaatctgcgggtagctgattttgctcagttttgggcatttgcgaagagatctggctatgaagtgtacttgctagaagcagcttataaggacccagcgggttgtgcagcaaggaacgtgcatggtttcatgccagatgaagtacaaaaaatggctggccaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69712" stop="75144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70012" g_stop="70092" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70093" i_stop="70243" i_length="151">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.576" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70244" g_stop="70345" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="183" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70346" i_stop="71912" i_length="1567">
            <donor d_prob="0.584" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71913" g_stop="72525" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="796" r_length="613" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72526" i_stop="74610" i_length="2085">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74611" g_stop="74661" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="797" r_stop="847" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74662" i_stop="74778" i_length="117">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74779" g_stop="74844" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="848" r_stop="913" r_length="66" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E738515" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>913</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70012" e_stop="70092"/>
          <exon e_start="70244" e_stop="70345"/>
          <exon e_start="71913" e_stop="72525"/>
          <exon e_start="74611" e_stop="74661"/>
          <exon e_start="74779" e_stop="74844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGACCTTGAGGTTGAAAACGGTGGCACTGCCCCTCGTATTCACTCAATGGATGAGTACTTCATGACTGAAGTTGACAAGGTCTTATCTTGCTATCTTACTTGAAGTTCTTTTGATCGTCAATATCTCCCGCTTTTCTTCGTTTCACATTTTCAAGCCTCATATTAATTCCAGTTACTAGTTATTTCAAGTCCTCTCCTAAAAATATAAACAAGGTCTTTCAGACATGCAGGTTGAGGAGAGTGAGGTTTTGCGATCTTCTGGTTCTGTCAGGGGCAAAAAGATGGTGACAAAGAAGGTTATCGAATACTGCTATGAACCTGAGATGGAGGAGGTAAAGCCATCTCTTCCTGAAATTACGAGATAACCGAACTTCCACAGAATTTGGAGCCTTTAGTTTTGAGATATTTATCTGCCTTTCTATTTGGTAGCTTTATTCTATTTGTCTGCAGTGTAGTAAAATCCATGTTTTAGGAAGTTTATATCAGAGATGAACAAAGATACTGGGGATACAACCCTAAAAGGTTTGGTCAAACCAAAAGTGCTTAGAAATTGTAAAATGATAAGCTAGGGTGACCAACTTATAACTTTTAACTGATTTTGGCTTATAATTACTTTTTGTGTTTACCAAATGGCCTAGATAAGACAAAAAATTACTACTCTCTCCGTTCAAAAAGAGTGGCCTAATTTGACTTGGCACGGAGTTTAAGAAAATAATGAAGACTTTTAAATCTTGCGGTCCAAATTAAAGTTGTGTCAAATATACAAAATTGTCCTTTAATATGCCACGTGTAAAGCTGAAAGTGAAATGTTACCAAAAAAGAAAAGAGATCATTCTTTTTGAAACAAACTAAAAAGGATAGGAGGTCATTCTTTTTGAAACGGAGGGAGTACAAGATAGTTTGATCAACTTATATGCTTAGCCAGACACCCTCATAGTGTTAGCTATTTGTACAGAAGTTCAATATCTTACTAAAGGAATGATATTTTGTTGGTTGCACAAGTTTCTCTTTGCCTAGTATTTGTAAGGCTAAGATGACTTTAGAATTGTAAATTTACAACGTAGAATCATGCAGTATTCAGGGTAAGCAGTATTGATATTGAGTTCTCTTTGTCCAATTTTTTTTAAAAGTTTATTAAGGTTGCAATTTCTTTGTTTGCTACTGTTAGGTTCACAAGTTCTTACTAATGTAATGCTAGGGAGAGTGTAATTAGTCCTAGTTAAGTTTCCTCTTTCCTTTGTTTGGGGGTGGGTGGGGTGCATAAGGATTGGATTAGAGTGTTATGGACATAAAGTAAACAAGCAACTATGGTTTCTCTTTTTCTCCTCTTTTTTTTCACTGTGAAAAAGGTGGAGGGGGGGGGGGGGCGTTGTGTAGTAGAAAAAGTTTTTCCTCCTCTAACCATGAGGTTGAGTGTTCGAGTCACCAACAATTTGAGAAAAAGTTTTGTTACTGGGATGGGGTTTTGAGGGGGCCGAGTTCACCATATCAACAAAAAAAACATTTTCATATTTGCATGTTAAGGAAGCTATATCTTGAAACTACGAGGTAACTCGCTATGTACAGTGGTTCAATTCTTTTTTAGAAGGATATTTCCAGTGATTTATTATATCTTTTGGTAACAGAAACATAGCATTAGAAACAGTTTGCGCGCCCATATGTGCATTTCTTCTGTGAGTTTAATGTTGATGTAATTAGTATATTGTAGTTGCATTTTTCAAGAAGCTTGTCTCTTCTATACTGTATGCAATTTCTGGAATCAAATATGGTATAGAGGTCATCTTATGGCATTTCCAGTTGATTTTTATAGGTTTGATTTTACTAGTTTGCTTTTTCCAATTTTCTGCAATTTAGTGCCTTGTATATATTATTTCTATTGATATTTTCTCTCTTCTTCAGGCTTATCGTTCAAGCATGTTGAAGGCTTTCAAAAAGACCCTGGATGAGGGGGCTTTCTCCTTCGTAATTGGTATGGTATTTTTGGGGCAAGATAGCTCTTACTCTGTAATTCCACATATCTTCTTTTTGTCCATAATCTCAGACTGACATGTGAAATGGTTTGCATCACTGTTTCCTCTTTCAGCTGGATGTCTATTCTTTTGTTTATTGTGTCTGTGAGATTCTCCAAAATTTGCTAGTGAAATGATTACATGCTGCTGTCAGTTGTTTTCTTGTGTCATCTGTTGCTCTCTATTGGAGCATATTTCTATAGAAAACCTCCATTTTGTTGGATTTAGGAAACTTGAAGGTAGGTAGCATCCCATAGGTTTCTTGATAATAGCTAGCACATTGGTTCTTCAAGTCATGATAGATTGTCTAGTTAAAATGTCACCCATAGTTTAATTATAGATTAAGTGGTGATGCAGTGCCTTGCACTGCCTTCAGTTTACTAACTACAGATGCAGTTTTGTTCGGCAATTGACCCATTTGTTGCTGGTATTTGTGCCTCATCTTAGTGGATGACCGCAATCTGCGGGTAGCTGATTTTGCTCAGTTTTGGGCATTTGCGAAGGTATACTCTCAGTTCTCTCTATTATGCAACCAGTTCAAGTGCTATACTCTAGTTCAATTATTTTCTAGGATACTTTGAATGTCTAAAAGTCTTAAACCTTTCGTGTGTATATATTTTGTTACTGCTTTATAGTTTGTCAGTTCTTTCAAGTTTTAAGTATTATAACCTTTGTTGATCTAGAGAACTTGTGGCCGCAACAGCTTTTCTGTTGTTGTCCAATGTGACTGGGTGGATACTGCGAGTTTGAAAACTCACTCCATCAAGTCCTAATATATTGTTATATTCGTATTGTAGTATCAGTTTTTGTTAGTTGCAATCTGTTTAATTCATTGTGTATTTTACCTCAGTTTCTATTTTTTGTTGGTCCACTTAAAAGGACCATTTCTTGATGACTTGTAGATGAATTGTTTGTGAGTTTTAGCTCTTTCTTGACTGCTGGTGATGATTTGATATAGTTTCATGCATTGTTGTAGAGTAGATTTACTAAATAAGAAAAAGCAATCGACCTGTCTTTCATTTTTGGTTATGTTTGGCTGAACATTGTCATCAATATTTTGGTGGTGATTTTGTTTGCAATTCTCCATAGACATTATTGCCGTGTCTTGTTTTGCTCACACTAAGCTTGAAGTTTAGTATAACACAACAATGTGATAGGTATTGCCAAGGATATCTTTATCACATCTCCATTTGATTGAATAGGCTCCTGGATTTTGGAAAATATGAGTATACTAGTTCAAAGTTCGTTCAAGATTAGTTATGATGTTACCAAGAACAGTATATGGAGTAGTTCGGTTTGTGGTAGGATATTGAAATCTTCAGCAGATCATGTTTTTAATCTTGAGATAATTGCTAATCGATGAGCATAAAGCTTAATGCATCGACTTGGACAACTTCTAAAACTTAGCTTTTTATTACTAATTGCTAGGATAAAACTGGCATATATTTCAAAGTGCAGGATCATCAAGCTTGAAGCTTCAGACTAATTTAACCAAAGAACAATGCAGAATTATAAATTTTCAGTAAGCAAGCTCAATATTCATTTAGGATAGGGCTGAAATCCCCAGCTAAAGCAACAGAAAACTTGGATAAATGTTGGATTTAGCATCTCTTCCAAGTTCCAATCTACAACTTCTTAATAGAAACTATGGATCTGTAGATGACAAATGGCTTAAGTATTTGAAGACTTTTCTAGAGCTACCTGCTTCAGCACTTGCCTTCCAGTCGATGTATTATGTTGGTTATCTAAATACAGCTAAACAACTGTGTATTCAGAGTGCACAAATTTGTGTGTGACAACTGCATGTATGCATGCATGCATGCATGTATGTATGTATGTATCTCATAAAGAACTTTTAAGATCATGAAGGTTTGTTGAAGGATCTCTTATTGACAGATCATATAAGCTTAAATTTGTCTATTTTACTGTACCAAATTTTCCTTCTTTTGGGTTTAGGTTTGGTTGTTTGGAATGAGGTGTTAAAAGAACTGATTTGATGGAAGTGGTTGAATATGTGAAGATTCCAAGCAACTAATTCAACCATACAATTGAGGTGGGTTTATGTTTTAGATTTTGTAGCCAAGGAGACTCGAGTCACTAGGTTTGTCCTGTAGTTATTTGTATTTATAGTATAGTCAGTTTCTGTTCTGGCTGGTTATTACATAAATTAGTTTAATAATTCTTAGCCAAGGTGGCTCGAAGTTATGAAATCGGTCAAGGTAGATACCTGGGTTTGTGGGAGGTAGCAGTACTCGGTGGAAATTGTCGAGGTGCATGCAAGTTGGACTGGACACCACTGTTATCAAAAGGAAAAATAAATAATTACTCTATGTCAGAGTTCTTGCTTTTTGGATAGGAGTGGTGCTCCTTGCTTTCTAAATTTAATTGCTTGTTGCATTTTGTTCAGTGATGCATGCTGCTTCTGTTACTTTTGCAGTGTTATGGCTTCTCGAACTGCTGATTGTTTTTTTGATGACCGATTATCTTCTTCGATTGTTACCATCACATCTATTTAAGAAAAGCTGATTGCTGCCTCTATGATTGCCATGGTTGTTTTCTTTGCTTATTTCCGTTGCTTATTATTTCAGAGATCTGGCTATGAAGTGTACTTGCTAGAAGCAGCTTATAAGGACCCAGCGGTAAGTTAGCTCATGTATTTCTTTGTTAGCCACAATCTAACATTAAGCATTGTATATGTCTGTGCATTATCTGATACGCTGAAGATACTTTTTCAACTCATGTCCTTGTGGTTTCAGGGTTGTGCAGCAAGGAACGTGCATGGTTTCATGCAGGATGATGTACAAAAGATGGCTGGCCAATGG</genome_strand>
        <mrna_strand>CGTTACCTTGAGGTTGAAAACGGTGGCACTGCCCCTCGTATTCACTCAATGGATGAGTACTTCATGACTGAAGTTGACAAG.......................................................................................................................................................GTTGAGGAGAGTGAGGTTTTGCGATCTTCTGGTTCTGTCAGGGGCAAAAAGATGGTGACAAAGAAGGTTATCGAATACTGCTATGAACCTGAGATGGAGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATCGTTCAAGCATGTTGAAGGCTTTCAAAAAGACCCTGGATGAGGGGGCTTTCTCCTTCGTAATTGGTATGGTATTTTTGGGGCAAGATAGCTCTTACTCTGTAATTCCACATATCTTCTTTTTGTCCATAATCTCAGACTGACATGTGAAATGGTTTGCATCACTGTTTCCTCTTTCAGCTGGATGTCTATTCTTTTGTTTATTGTGTCTGTGAGATTCTCCAAAATTTGCTAGTGAAATGATTACATGCTGCTGTCAGTTGTTTTCTTGTGTCATCTGTTGCTCTCTATTGGAGCATATTTCTATAGAAAACCTCCATTTTGTTGGATTTAGGAAACTTGAAGGTAGGTAGCATCCCATAGGTTTCTTGATAATAGCTAGCACATTGGTTCTTCAAGTCATGATAGATTGTCTAGTTAAAATGTCACCCATAGTTTAATTATAGATTAAGTGGTGATGCAGTGCCTTGCACTGCCTTCAGTTTACTAACTACAGATGCAGTTTTGTTCGGCAATTGACCCATTTGTTGCTGGTATTTGTGCCTCATCTTAGTGGATGACCGCAATCTGCGGGTAGCTGATTTTGCTCAGTTTTGGGCATTTGCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTGGCTATGAAGTGTACTTGCTAGAAGCAGCTTATAAGGACCCAGCG.....................................................................................................................GGTTGTGCAGCAAGGAACGTGCATGGTTTCATGCCAGATGAAGTACAAAAAATGGCTGGCCAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739404" ref_strand="+" ref_description="SGN-E739404 [LC17BC09]">
      <seq>ctgtccttgaggttgaaaacggtggcactgcccctcgtattcactcaatggatgagtacttcatgactgaagttgacaaggttgaggagagtgaggttttgcgatcttctggttctgtcaggggcaaaaagatggtgacaaagaaggttatcgaatactgctatgaacctgagatggaggaggcttatcgttcaagcatgttgaaggctttcaaaaagaccctggatgagggggctttctccttcgtaattggtatggtatttttggggcaagatagctcttactctgtaattccacatatcttctttttgtccataatctcagactgacatgtgaaatggtttgcatcactgtttcctctttcagctggatgtctattcttttgtttattgtgtctgtgagattctccaaaatttgctagtgaaatgattacatgctgctgtcagttgttttcttgtgtcatctgttgctctctattggagcatatttctatagaaaacctccattttgttggatttaggaaacttgaaggtaggtagcatcccataggtttcttgataatagctagcacattggttcttcaagtcatgatagattgtctagttaaaatgtcacccatagtttaattatagattaagtggtgatgcagtgccttgcactgccttcagtttactaactacagatgcagttttgttcggcaattgacccatttgttgctggtatttgtgcctcatcttagtggatgaccgcaatctgcgggtagctgattttgctcagttttgggcatttgcgaagagatctggctatgaagtgtacttgctagaagcagcttataaggacccagcgggttgtgcagcaaggaacgtgcatggtttcatgcangatgatgtacaaaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69714" stop="75132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70013" g_stop="70092" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70093" i_stop="70243" i_length="151">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.576" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70244" g_stop="70345" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="182" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70346" i_stop="71912" i_length="1567">
            <donor d_prob="0.584" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71913" g_stop="72525" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="795" r_length="613" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72526" i_stop="74610" i_length="2085">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74611" g_stop="74661" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="846" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74662" i_stop="74778" i_length="117">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74779" g_stop="74832" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="847" r_stop="900" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E739404" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>900</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70013" e_stop="70092"/>
          <exon e_start="70244" e_stop="70345"/>
          <exon e_start="71913" e_stop="72525"/>
          <exon e_start="74611" e_stop="74661"/>
          <exon e_start="74779" e_stop="74832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACCTTGAGGTTGAAAACGGTGGCACTGCCCCTCGTATTCACTCAATGGATGAGTACTTCATGACTGAAGTTGACAAGGTCTTATCTTGCTATCTTACTTGAAGTTCTTTTGATCGTCAATATCTCCCGCTTTTCTTCGTTTCACATTTTCAAGCCTCATATTAATTCCAGTTACTAGTTATTTCAAGTCCTCTCCTAAAAATATAAACAAGGTCTTTCAGACATGCAGGTTGAGGAGAGTGAGGTTTTGCGATCTTCTGGTTCTGTCAGGGGCAAAAAGATGGTGACAAAGAAGGTTATCGAATACTGCTATGAACCTGAGATGGAGGAGGTAAAGCCATCTCTTCCTGAAATTACGAGATAACCGAACTTCCACAGAATTTGGAGCCTTTAGTTTTGAGATATTTATCTGCCTTTCTATTTGGTAGCTTTATTCTATTTGTCTGCAGTGTAGTAAAATCCATGTTTTAGGAAGTTTATATCAGAGATGAACAAAGATACTGGGGATACAACCCTAAAAGGTTTGGTCAAACCAAAAGTGCTTAGAAATTGTAAAATGATAAGCTAGGGTGACCAACTTATAACTTTTAACTGATTTTGGCTTATAATTACTTTTTGTGTTTACCAAATGGCCTAGATAAGACAAAAAATTACTACTCTCTCCGTTCAAAAAGAGTGGCCTAATTTGACTTGGCACGGAGTTTAAGAAAATAATGAAGACTTTTAAATCTTGCGGTCCAAATTAAAGTTGTGTCAAATATACAAAATTGTCCTTTAATATGCCACGTGTAAAGCTGAAAGTGAAATGTTACCAAAAAAGAAAAGAGATCATTCTTTTTGAAACAAACTAAAAAGGATAGGAGGTCATTCTTTTTGAAACGGAGGGAGTACAAGATAGTTTGATCAACTTATATGCTTAGCCAGACACCCTCATAGTGTTAGCTATTTGTACAGAAGTTCAATATCTTACTAAAGGAATGATATTTTGTTGGTTGCACAAGTTTCTCTTTGCCTAGTATTTGTAAGGCTAAGATGACTTTAGAATTGTAAATTTACAACGTAGAATCATGCAGTATTCAGGGTAAGCAGTATTGATATTGAGTTCTCTTTGTCCAATTTTTTTTAAAAGTTTATTAAGGTTGCAATTTCTTTGTTTGCTACTGTTAGGTTCACAAGTTCTTACTAATGTAATGCTAGGGAGAGTGTAATTAGTCCTAGTTAAGTTTCCTCTTTCCTTTGTTTGGGGGTGGGTGGGGTGCATAAGGATTGGATTAGAGTGTTATGGACATAAAGTAAACAAGCAACTATGGTTTCTCTTTTTCTCCTCTTTTTTTTCACTGTGAAAAAGGTGGAGGGGGGGGGGGGGCGTTGTGTAGTAGAAAAAGTTTTTCCTCCTCTAACCATGAGGTTGAGTGTTCGAGTCACCAACAATTTGAGAAAAAGTTTTGTTACTGGGATGGGGTTTTGAGGGGGCCGAGTTCACCATATCAACAAAAAAAACATTTTCATATTTGCATGTTAAGGAAGCTATATCTTGAAACTACGAGGTAACTCGCTATGTACAGTGGTTCAATTCTTTTTTAGAAGGATATTTCCAGTGATTTATTATATCTTTTGGTAACAGAAACATAGCATTAGAAACAGTTTGCGCGCCCATATGTGCATTTCTTCTGTGAGTTTAATGTTGATGTAATTAGTATATTGTAGTTGCATTTTTCAAGAAGCTTGTCTCTTCTATACTGTATGCAATTTCTGGAATCAAATATGGTATAGAGGTCATCTTATGGCATTTCCAGTTGATTTTTATAGGTTTGATTTTACTAGTTTGCTTTTTCCAATTTTCTGCAATTTAGTGCCTTGTATATATTATTTCTATTGATATTTTCTCTCTTCTTCAGGCTTATCGTTCAAGCATGTTGAAGGCTTTCAAAAAGACCCTGGATGAGGGGGCTTTCTCCTTCGTAATTGGTATGGTATTTTTGGGGCAAGATAGCTCTTACTCTGTAATTCCACATATCTTCTTTTTGTCCATAATCTCAGACTGACATGTGAAATGGTTTGCATCACTGTTTCCTCTTTCAGCTGGATGTCTATTCTTTTGTTTATTGTGTCTGTGAGATTCTCCAAAATTTGCTAGTGAAATGATTACATGCTGCTGTCAGTTGTTTTCTTGTGTCATCTGTTGCTCTCTATTGGAGCATATTTCTATAGAAAACCTCCATTTTGTTGGATTTAGGAAACTTGAAGGTAGGTAGCATCCCATAGGTTTCTTGATAATAGCTAGCACATTGGTTCTTCAAGTCATGATAGATTGTCTAGTTAAAATGTCACCCATAGTTTAATTATAGATTAAGTGGTGATGCAGTGCCTTGCACTGCCTTCAGTTTACTAACTACAGATGCAGTTTTGTTCGGCAATTGACCCATTTGTTGCTGGTATTTGTGCCTCATCTTAGTGGATGACCGCAATCTGCGGGTAGCTGATTTTGCTCAGTTTTGGGCATTTGCGAAGGTATACTCTCAGTTCTCTCTATTATGCAACCAGTTCAAGTGCTATACTCTAGTTCAATTATTTTCTAGGATACTTTGAATGTCTAAAAGTCTTAAACCTTTCGTGTGTATATATTTTGTTACTGCTTTATAGTTTGTCAGTTCTTTCAAGTTTTAAGTATTATAACCTTTGTTGATCTAGAGAACTTGTGGCCGCAACAGCTTTTCTGTTGTTGTCCAATGTGACTGGGTGGATACTGCGAGTTTGAAAACTCACTCCATCAAGTCCTAATATATTGTTATATTCGTATTGTAGTATCAGTTTTTGTTAGTTGCAATCTGTTTAATTCATTGTGTATTTTACCTCAGTTTCTATTTTTTGTTGGTCCACTTAAAAGGACCATTTCTTGATGACTTGTAGATGAATTGTTTGTGAGTTTTAGCTCTTTCTTGACTGCTGGTGATGATTTGATATAGTTTCATGCATTGTTGTAGAGTAGATTTACTAAATAAGAAAAAGCAATCGACCTGTCTTTCATTTTTGGTTATGTTTGGCTGAACATTGTCATCAATATTTTGGTGGTGATTTTGTTTGCAATTCTCCATAGACATTATTGCCGTGTCTTGTTTTGCTCACACTAAGCTTGAAGTTTAGTATAACACAACAATGTGATAGGTATTGCCAAGGATATCTTTATCACATCTCCATTTGATTGAATAGGCTCCTGGATTTTGGAAAATATGAGTATACTAGTTCAAAGTTCGTTCAAGATTAGTTATGATGTTACCAAGAACAGTATATGGAGTAGTTCGGTTTGTGGTAGGATATTGAAATCTTCAGCAGATCATGTTTTTAATCTTGAGATAATTGCTAATCGATGAGCATAAAGCTTAATGCATCGACTTGGACAACTTCTAAAACTTAGCTTTTTATTACTAATTGCTAGGATAAAACTGGCATATATTTCAAAGTGCAGGATCATCAAGCTTGAAGCTTCAGACTAATTTAACCAAAGAACAATGCAGAATTATAAATTTTCAGTAAGCAAGCTCAATATTCATTTAGGATAGGGCTGAAATCCCCAGCTAAAGCAACAGAAAACTTGGATAAATGTTGGATTTAGCATCTCTTCCAAGTTCCAATCTACAACTTCTTAATAGAAACTATGGATCTGTAGATGACAAATGGCTTAAGTATTTGAAGACTTTTCTAGAGCTACCTGCTTCAGCACTTGCCTTCCAGTCGATGTATTATGTTGGTTATCTAAATACAGCTAAACAACTGTGTATTCAGAGTGCACAAATTTGTGTGTGACAACTGCATGTATGCATGCATGCATGCATGTATGTATGTATGTATCTCATAAAGAACTTTTAAGATCATGAAGGTTTGTTGAAGGATCTCTTATTGACAGATCATATAAGCTTAAATTTGTCTATTTTACTGTACCAAATTTTCCTTCTTTTGGGTTTAGGTTTGGTTGTTTGGAATGAGGTGTTAAAAGAACTGATTTGATGGAAGTGGTTGAATATGTGAAGATTCCAAGCAACTAATTCAACCATACAATTGAGGTGGGTTTATGTTTTAGATTTTGTAGCCAAGGAGACTCGAGTCACTAGGTTTGTCCTGTAGTTATTTGTATTTATAGTATAGTCAGTTTCTGTTCTGGCTGGTTATTACATAAATTAGTTTAATAATTCTTAGCCAAGGTGGCTCGAAGTTATGAAATCGGTCAAGGTAGATACCTGGGTTTGTGGGAGGTAGCAGTACTCGGTGGAAATTGTCGAGGTGCATGCAAGTTGGACTGGACACCACTGTTATCAAAAGGAAAAATAAATAATTACTCTATGTCAGAGTTCTTGCTTTTTGGATAGGAGTGGTGCTCCTTGCTTTCTAAATTTAATTGCTTGTTGCATTTTGTTCAGTGATGCATGCTGCTTCTGTTACTTTTGCAGTGTTATGGCTTCTCGAACTGCTGATTGTTTTTTTGATGACCGATTATCTTCTTCGATTGTTACCATCACATCTATTTAAGAAAAGCTGATTGCTGCCTCTATGATTGCCATGGTTGTTTTCTTTGCTTATTTCCGTTGCTTATTATTTCAGAGATCTGGCTATGAAGTGTACTTGCTAGAAGCAGCTTATAAGGACCCAGCGGTAAGTTAGCTCATGTATTTCTTTGTTAGCCACAATCTAACATTAAGCATTGTATATGTCTGTGCATTATCTGATACGCTGAAGATACTTTTTCAACTCATGTCCTTGTGGTTTCAGGGTTGTGCAGCAAGGAACGTGCATGGTTTCATGCAGGATGATGTACAAAAGATG</genome_strand>
        <mrna_strand>CTGTCCTTGAGGTTGAAAACGGTGGCACTGCCCCTCGTATTCACTCAATGGATGAGTACTTCATGACTGAAGTTGACAAG.......................................................................................................................................................GTTGAGGAGAGTGAGGTTTTGCGATCTTCTGGTTCTGTCAGGGGCAAAAAGATGGTGACAAAGAAGGTTATCGAATACTGCTATGAACCTGAGATGGAGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATCGTTCAAGCATGTTGAAGGCTTTCAAAAAGACCCTGGATGAGGGGGCTTTCTCCTTCGTAATTGGTATGGTATTTTTGGGGCAAGATAGCTCTTACTCTGTAATTCCACATATCTTCTTTTTGTCCATAATCTCAGACTGACATGTGAAATGGTTTGCATCACTGTTTCCTCTTTCAGCTGGATGTCTATTCTTTTGTTTATTGTGTCTGTGAGATTCTCCAAAATTTGCTAGTGAAATGATTACATGCTGCTGTCAGTTGTTTTCTTGTGTCATCTGTTGCTCTCTATTGGAGCATATTTCTATAGAAAACCTCCATTTTGTTGGATTTAGGAAACTTGAAGGTAGGTAGCATCCCATAGGTTTCTTGATAATAGCTAGCACATTGGTTCTTCAAGTCATGATAGATTGTCTAGTTAAAATGTCACCCATAGTTTAATTATAGATTAAGTGGTGATGCAGTGCCTTGCACTGCCTTCAGTTTACTAACTACAGATGCAGTTTTGTTCGGCAATTGACCCATTTGTTGCTGGTATTTGTGCCTCATCTTAGTGGATGACCGCAATCTGCGGGTAGCTGATTTTGCTCAGTTTTGGGCATTTGCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTGGCTATGAAGTGTACTTGCTAGAAGCAGCTTATAAGGACCCAGCG.....................................................................................................................GGTTGTGCAGCAAGGAACGTGCATGGTTTCATGCANGATGATGTACAAAAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736674" ref_strand="+" ref_description="SGN-E736674 [LC06CG11]">
      <seq>gtgaccttgaggttgaaaacggtggcactgcccctcgtattcactcaatggatgagtacttcatgactgaagttgacaaggttgaggagagtgaggttttgcgatcttctggttctgtcaggggcaaaaagatggtgacaaagaaggttatcgaatactgctatgaacctgagatggaggaggcttatcgttcaagcatgttgaaggctttcaaaaagaccctggatgagggggctttctccttcgtaattggtatggtatttttggggcaagatagctcttactctgtaattccacatatcttctttttgtccataatctcagactgacatgtgaaatggtttgcatcactgtttcctctttcagctggatgtctattcttttgtttattgtgtctgtgagattctccaaaatttgctagtgaaatgattacatgctgctgtcagttgttttcttgtgtcatctgttgctctctattggagcatatttctatagaaaacctccattttgttggatttaggaaacttgaaggtaggtagcatcccataggtttcttgataatagctagcacattggttcttcaagtcatgatagattgtctagttaaaatgtcacccatagtttaattatagattaagtggtgatgcagtgccttgcactgccttcagtttactaactacagatgcagttttgttcggcaattgacccatttgttgctggtatttgtgcctcatcttagtggatgaccgcaatctgcgggtagctgattttgctcagttttgggcatttgcgaagagatctggctatgaagtgtacttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69713" stop="74936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70013" g_stop="70092" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70093" i_stop="70243" i_length="151">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.576" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70244" g_stop="70345" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="182" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70346" i_stop="71912" i_length="1567">
            <donor d_prob="0.584" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71913" g_stop="72525" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="795" r_length="613" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72526" i_stop="74610" i_length="2085">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74611" g_stop="74636" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="821" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E736674" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70013" e_stop="70092"/>
          <exon e_start="70244" e_stop="70345"/>
          <exon e_start="71913" e_stop="72525"/>
          <exon e_start="74611" e_stop="74636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACCTTGAGGTTGAAAACGGTGGCACTGCCCCTCGTATTCACTCAATGGATGAGTACTTCATGACTGAAGTTGACAAGGTCTTATCTTGCTATCTTACTTGAAGTTCTTTTGATCGTCAATATCTCCCGCTTTTCTTCGTTTCACATTTTCAAGCCTCATATTAATTCCAGTTACTAGTTATTTCAAGTCCTCTCCTAAAAATATAAACAAGGTCTTTCAGACATGCAGGTTGAGGAGAGTGAGGTTTTGCGATCTTCTGGTTCTGTCAGGGGCAAAAAGATGGTGACAAAGAAGGTTATCGAATACTGCTATGAACCTGAGATGGAGGAGGTAAAGCCATCTCTTCCTGAAATTACGAGATAACCGAACTTCCACAGAATTTGGAGCCTTTAGTTTTGAGATATTTATCTGCCTTTCTATTTGGTAGCTTTATTCTATTTGTCTGCAGTGTAGTAAAATCCATGTTTTAGGAAGTTTATATCAGAGATGAACAAAGATACTGGGGATACAACCCTAAAAGGTTTGGTCAAACCAAAAGTGCTTAGAAATTGTAAAATGATAAGCTAGGGTGACCAACTTATAACTTTTAACTGATTTTGGCTTATAATTACTTTTTGTGTTTACCAAATGGCCTAGATAAGACAAAAAATTACTACTCTCTCCGTTCAAAAAGAGTGGCCTAATTTGACTTGGCACGGAGTTTAAGAAAATAATGAAGACTTTTAAATCTTGCGGTCCAAATTAAAGTTGTGTCAAATATACAAAATTGTCCTTTAATATGCCACGTGTAAAGCTGAAAGTGAAATGTTACCAAAAAAGAAAAGAGATCATTCTTTTTGAAACAAACTAAAAAGGATAGGAGGTCATTCTTTTTGAAACGGAGGGAGTACAAGATAGTTTGATCAACTTATATGCTTAGCCAGACACCCTCATAGTGTTAGCTATTTGTACAGAAGTTCAATATCTTACTAAAGGAATGATATTTTGTTGGTTGCACAAGTTTCTCTTTGCCTAGTATTTGTAAGGCTAAGATGACTTTAGAATTGTAAATTTACAACGTAGAATCATGCAGTATTCAGGGTAAGCAGTATTGATATTGAGTTCTCTTTGTCCAATTTTTTTTAAAAGTTTATTAAGGTTGCAATTTCTTTGTTTGCTACTGTTAGGTTCACAAGTTCTTACTAATGTAATGCTAGGGAGAGTGTAATTAGTCCTAGTTAAGTTTCCTCTTTCCTTTGTTTGGGGGTGGGTGGGGTGCATAAGGATTGGATTAGAGTGTTATGGACATAAAGTAAACAAGCAACTATGGTTTCTCTTTTTCTCCTCTTTTTTTTCACTGTGAAAAAGGTGGAGGGGGGGGGGGGGCGTTGTGTAGTAGAAAAAGTTTTTCCTCCTCTAACCATGAGGTTGAGTGTTCGAGTCACCAACAATTTGAGAAAAAGTTTTGTTACTGGGATGGGGTTTTGAGGGGGCCGAGTTCACCATATCAACAAAAAAAACATTTTCATATTTGCATGTTAAGGAAGCTATATCTTGAAACTACGAGGTAACTCGCTATGTACAGTGGTTCAATTCTTTTTTAGAAGGATATTTCCAGTGATTTATTATATCTTTTGGTAACAGAAACATAGCATTAGAAACAGTTTGCGCGCCCATATGTGCATTTCTTCTGTGAGTTTAATGTTGATGTAATTAGTATATTGTAGTTGCATTTTTCAAGAAGCTTGTCTCTTCTATACTGTATGCAATTTCTGGAATCAAATATGGTATAGAGGTCATCTTATGGCATTTCCAGTTGATTTTTATAGGTTTGATTTTACTAGTTTGCTTTTTCCAATTTTCTGCAATTTAGTGCCTTGTATATATTATTTCTATTGATATTTTCTCTCTTCTTCAGGCTTATCGTTCAAGCATGTTGAAGGCTTTCAAAAAGACCCTGGATGAGGGGGCTTTCTCCTTCGTAATTGGTATGGTATTTTTGGGGCAAGATAGCTCTTACTCTGTAATTCCACATATCTTCTTTTTGTCCATAATCTCAGACTGACATGTGAAATGGTTTGCATCACTGTTTCCTCTTTCAGCTGGATGTCTATTCTTTTGTTTATTGTGTCTGTGAGATTCTCCAAAATTTGCTAGTGAAATGATTACATGCTGCTGTCAGTTGTTTTCTTGTGTCATCTGTTGCTCTCTATTGGAGCATATTTCTATAGAAAACCTCCATTTTGTTGGATTTAGGAAACTTGAAGGTAGGTAGCATCCCATAGGTTTCTTGATAATAGCTAGCACATTGGTTCTTCAAGTCATGATAGATTGTCTAGTTAAAATGTCACCCATAGTTTAATTATAGATTAAGTGGTGATGCAGTGCCTTGCACTGCCTTCAGTTTACTAACTACAGATGCAGTTTTGTTCGGCAATTGACCCATTTGTTGCTGGTATTTGTGCCTCATCTTAGTGGATGACCGCAATCTGCGGGTAGCTGATTTTGCTCAGTTTTGGGCATTTGCGAAGGTATACTCTCAGTTCTCTCTATTATGCAACCAGTTCAAGTGCTATACTCTAGTTCAATTATTTTCTAGGATACTTTGAATGTCTAAAAGTCTTAAACCTTTCGTGTGTATATATTTTGTTACTGCTTTATAGTTTGTCAGTTCTTTCAAGTTTTAAGTATTATAACCTTTGTTGATCTAGAGAACTTGTGGCCGCAACAGCTTTTCTGTTGTTGTCCAATGTGACTGGGTGGATACTGCGAGTTTGAAAACTCACTCCATCAAGTCCTAATATATTGTTATATTCGTATTGTAGTATCAGTTTTTGTTAGTTGCAATCTGTTTAATTCATTGTGTATTTTACCTCAGTTTCTATTTTTTGTTGGTCCACTTAAAAGGACCATTTCTTGATGACTTGTAGATGAATTGTTTGTGAGTTTTAGCTCTTTCTTGACTGCTGGTGATGATTTGATATAGTTTCATGCATTGTTGTAGAGTAGATTTACTAAATAAGAAAAAGCAATCGACCTGTCTTTCATTTTTGGTTATGTTTGGCTGAACATTGTCATCAATATTTTGGTGGTGATTTTGTTTGCAATTCTCCATAGACATTATTGCCGTGTCTTGTTTTGCTCACACTAAGCTTGAAGTTTAGTATAACACAACAATGTGATAGGTATTGCCAAGGATATCTTTATCACATCTCCATTTGATTGAATAGGCTCCTGGATTTTGGAAAATATGAGTATACTAGTTCAAAGTTCGTTCAAGATTAGTTATGATGTTACCAAGAACAGTATATGGAGTAGTTCGGTTTGTGGTAGGATATTGAAATCTTCAGCAGATCATGTTTTTAATCTTGAGATAATTGCTAATCGATGAGCATAAAGCTTAATGCATCGACTTGGACAACTTCTAAAACTTAGCTTTTTATTACTAATTGCTAGGATAAAACTGGCATATATTTCAAAGTGCAGGATCATCAAGCTTGAAGCTTCAGACTAATTTAACCAAAGAACAATGCAGAATTATAAATTTTCAGTAAGCAAGCTCAATATTCATTTAGGATAGGGCTGAAATCCCCAGCTAAAGCAACAGAAAACTTGGATAAATGTTGGATTTAGCATCTCTTCCAAGTTCCAATCTACAACTTCTTAATAGAAACTATGGATCTGTAGATGACAAATGGCTTAAGTATTTGAAGACTTTTCTAGAGCTACCTGCTTCAGCACTTGCCTTCCAGTCGATGTATTATGTTGGTTATCTAAATACAGCTAAACAACTGTGTATTCAGAGTGCACAAATTTGTGTGTGACAACTGCATGTATGCATGCATGCATGCATGTATGTATGTATGTATCTCATAAAGAACTTTTAAGATCATGAAGGTTTGTTGAAGGATCTCTTATTGACAGATCATATAAGCTTAAATTTGTCTATTTTACTGTACCAAATTTTCCTTCTTTTGGGTTTAGGTTTGGTTGTTTGGAATGAGGTGTTAAAAGAACTGATTTGATGGAAGTGGTTGAATATGTGAAGATTCCAAGCAACTAATTCAACCATACAATTGAGGTGGGTTTATGTTTTAGATTTTGTAGCCAAGGAGACTCGAGTCACTAGGTTTGTCCTGTAGTTATTTGTATTTATAGTATAGTCAGTTTCTGTTCTGGCTGGTTATTACATAAATTAGTTTAATAATTCTTAGCCAAGGTGGCTCGAAGTTATGAAATCGGTCAAGGTAGATACCTGGGTTTGTGGGAGGTAGCAGTACTCGGTGGAAATTGTCGAGGTGCATGCAAGTTGGACTGGACACCACTGTTATCAAAAGGAAAAATAAATAATTACTCTATGTCAGAGTTCTTGCTTTTTGGATAGGAGTGGTGCTCCTTGCTTTCTAAATTTAATTGCTTGTTGCATTTTGTTCAGTGATGCATGCTGCTTCTGTTACTTTTGCAGTGTTATGGCTTCTCGAACTGCTGATTGTTTTTTTGATGACCGATTATCTTCTTCGATTGTTACCATCACATCTATTTAAGAAAAGCTGATTGCTGCCTCTATGATTGCCATGGTTGTTTTCTTTGCTTATTTCCGTTGCTTATTATTTCAGAGATCTGGCTATGAAGTGTACTTGCT</genome_strand>
        <mrna_strand>GTGACCTTGAGGTTGAAAACGGTGGCACTGCCCCTCGTATTCACTCAATGGATGAGTACTTCATGACTGAAGTTGACAAG.......................................................................................................................................................GTTGAGGAGAGTGAGGTTTTGCGATCTTCTGGTTCTGTCAGGGGCAAAAAGATGGTGACAAAGAAGGTTATCGAATACTGCTATGAACCTGAGATGGAGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATCGTTCAAGCATGTTGAAGGCTTTCAAAAAGACCCTGGATGAGGGGGCTTTCTCCTTCGTAATTGGTATGGTATTTTTGGGGCAAGATAGCTCTTACTCTGTAATTCCACATATCTTCTTTTTGTCCATAATCTCAGACTGACATGTGAAATGGTTTGCATCACTGTTTCCTCTTTCAGCTGGATGTCTATTCTTTTGTTTATTGTGTCTGTGAGATTCTCCAAAATTTGCTAGTGAAATGATTACATGCTGCTGTCAGTTGTTTTCTTGTGTCATCTGTTGCTCTCTATTGGAGCATATTTCTATAGAAAACCTCCATTTTGTTGGATTTAGGAAACTTGAAGGTAGGTAGCATCCCATAGGTTTCTTGATAATAGCTAGCACATTGGTTCTTCAAGTCATGATAGATTGTCTAGTTAAAATGTCACCCATAGTTTAATTATAGATTAAGTGGTGATGCAGTGCCTTGCACTGCCTTCAGTTTACTAACTACAGATGCAGTTTTGTTCGGCAATTGACCCATTTGTTGCTGGTATTTGTGCCTCATCTTAGTGGATGACCGCAATCTGCGGGTAGCTGATTTTGCTCAGTTTTGGGCATTTGCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTGGCTATGAAGTGTACTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542411" ref_strand="+" ref_description="SGN-E542411 [TUS-63-L7]">
      <seq>ggaatccaagaggtagacatggatatggaagatgatgactcatttggagtgccttccactttagaggaagagaatattgagaagtttacagtacctccccaagaggatattccagcatgtggcgatgtaaaggatgatcaggttttagaccatgaggaggaccaccgaataactgaagtaaaagaattggcaaagagtaaatggtcatctgatttggatgaagataatactcgaagaaataaagatgccactagaaacataaatgctctctctgggttgatacaatcttacagcaaggaaggaaagttcgtacgttggggtgaccaggtaaccaaaagaggcttttctataggggcagcaaaagcaaccaatgtatctttaataattggtcctggtgcaggatacaacttgaagtcaaaccctttacctgacgaagagaagttgacatcaactcgacatagtggtgaaccaaagaggcagaacatatttcaagagagattacgagcagagcacgagtcgtttagggctgttttcgagtccttcagaactggttctgacaagaggcggccgcggatatctgggcttaatgctgaagatgaatagtgcatctgtagataggggtttaaaattgcatatttgctattttatgttttgctaatcctttgccatagaggatgactgcccagtgtcttacgctgggggagggtttagccatttctattgtaatatagtgtaattcgtgtagcaaaataggtagttgatggccttgactggnaggctatatgctatgggtccattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77089" stop="80692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77380" g_stop="77499" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77500" i_stop="78077" i_length="578">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78078" g_stop="78283" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="327" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78284" i_stop="79707" i_length="1424">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79708" g_stop="79791" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="411" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79792" i_stop="80003" i_length="212">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80004" g_stop="80392" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="800" r_length="389" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E542411" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77380" e_stop="77499"/>
          <exon e_start="78078" e_stop="78283"/>
          <exon e_start="79708" e_stop="79791"/>
          <exon e_start="80004" e_stop="80392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATC-TGCAGGTAGACATGGATATGGAAGATGATGACTCATTTGGAGTGCCTTCCACTTTAGAGGAAGAGAATATTGAGAAGTTTACAGTACCTCCCCAAGAGGATATTCCAGCATGTGGTATGTCATGGATCTGTCCAAAGGGTCATTTGTATTTCTCATGCTGCTCCTGTATTGTCTCTCTTGTTGTATGTCCTAAGTTCTAGTTAGTAAACATTTGTTGTGATTAGCAAAGCGGGAATTCAGTTATGGTGGTTCTCCCTAATCAATTTGTGATGATTCTGGTGTAGATGGCATAGTTTCCTACCTTTGCAATAGATATCGCCAAATCAGTCCCTTCCTTTAAAATTTACATTTGTTGTAGTCACAGTAGGTCATGTGTTTGTTTTGAGGCTTAAAACAAGGCTGAGCTGATTTTAGCGTTTAATAACACAAAGGACCCGGCTTTTGTGGTGGTTGAACTTGGCTGATTTCGAAGTTCAACCGCTAACCCTTAGCTTTGACCATTGGGTGGAACCTATTTTCTTTTTCAATGCTGGTTATTTCTCAACATCGATTGGATTCTGTCTAACATTATTATTGGATCTCTTCAACTTTATGCATACCATTCTGAAGTAGATACAAACAAATTTGTCCTTTCTTCATTGTCTTGGCTACAAAAAGCATCTGATCATACTTATTATGTAATTTGATATCAGGCGATGTAAAGGATGATCAGGTTTTAGACCATGAGGAGGACCACCGAATAACTGAAGTAAAAGAATTGGCAAAGAGTAAATGGTCATCTGATTTGGATGAAGATAATACTCGAAGAAATAAAGATGCCACTAGAAACATAAATGCTCTCTCTGGGTTGATACAATCTTACAGCAAGGAAGGAAAGTTCGTACGTTGGGGTGACCAGGTAACTTTTACGACGGACGATAGCTATTCGTAGTTCTATATTGATGTGTTTTCTTACTGAGGGATGATTGGTGAAACTTATGTCCGCTCTCTGTTCTCTGCCTGCTTTCCCCTTTCTGCTTTTACTGATGTGCTCACCAGCAAAGGCTGACCTTTTTTCATTCGTCATATCTTTACTTTTTTCTCGTCCTGTCATCTCCTGACACTTTACATTAGCAAAGGTCTGGTAGATGAATTGTTGGGAAGACTCTACCCTTCCATCCTCAATGTTTTTCTTTGAAAAAGTGAATTTTTTAAAGAATGTAAACCAGGAGTCCTACATCTTTTAGAATGGAAATAGGAGTCCGGATTTATTTTTAAATAAAGAATGAGTTTCTCAACACTATAGGTTGTTTCGGTGTCTATATTCTCATATATCAGAAATGTAAATTGATTAAAAAAACTTGGAAGTGTACGGATTTTTATTCATTGGATTGGACATGTGGTATTTCAACAGTTCTTCCCTTGACAATATTATTGTGAATCGGGATGCAGTATAGTTCCTAGATAGCTGATATTGGTAACTTTGGGATGGCATAAAAACCTTGTTGTAAAGGCTTGTTTATTTTTCCAAGGGGAGGGAAGACTTGTAAGAATTCGATTAAGTGGCTCCATCTCGTTGCAAGGCTAAGTTGTTTTATGGGGGCAGATTTACTTATTATCAAATTACATTGGCACTAGGGGAGGGAAAAATCATTGGAGTGAAATAAGTGTTCCATCTCATTAAAAGCTGAAGTTGTTTGAAGGGGAAGTTCTCATTAGGCGTTGGCCGTGAATCATATTTGCATGCCTATTTATCCGTTATTAAGGTTGGTTATTCAATGATTTTTTCAGATGTTGGCATGTAACTTGTTTCAGTGTACTAACCTTATCTATATCCGGCTACCAAAAACTATGTTGTATACGTCTTGGAGAGGAAGTTGAAATTACATGCAGCTACTAATCTGATAATTGTTTGTTCGCCATCTGTTCTACTGTTCTTCTAAAAAGAGGCACTAGCTCAATTTCTTTGCCCCAAGTGTATGTTTGCTAGGGAAGGAAATTTCCCATTTTCGGTTAGTCAAAAAATTTGGGGAACTTTTTCTCTGGGAAAACAAGTTCCTTTAGAATGAGGAAAATGATTTCCCTTGTTTTCCACAAAGTGCCTTTCCACATTAATTGTGTCTTCTCCTCACCCTCCAACACACCTCATCTTCACTCCACAACCTTGTAGCTCCCATCCCACGCCCCAACCCTTACCTCCACCCTCACTTTTTGTATTTGTCTAGATTATATATAAATGCTTTTAGAATAATACTTTTTTGTTTTCCAAGAATATAAGTGGGTTTATTACTTATTCTCTTGTGTTCAGTACATACACACCTAAACTTATGTTACTTATCCCAGGTAACCAAAAGAGGCTTTTCTATAGGGGCAGCAAAAGCAACCAATGTATCTTTAATAATTGGTCCTGGTGCAGGATACAACTTGGTGAGATTCCTCATGCAACTATTGTTTAACTTGTTCGGCTCATCATTGTCTACATCTTGATGCTTATTGGCAATATTATGCTTGTAATTATGCTGCTTACCTTTCTAGAGTTTTTGTTATTGTAATACAACATTTAGTTTTGTAAACTACTTAAAATGGGATTTTGCATATACTTGGAACCCATATTATAGCTGGCCTATTGTCATTTTCAGAAGTCAAACCCTTTACCTGACGAAGAGAAGTTGACATCAACTCGACATAGTGGTGAACCAAAGAGGCAGAACATATTTCAAGAGAGATTACGAGCAGAGCACGAGTCGTTTAGGGCTGTTTTCGAGTCCTTCAGAACTGGTTCTGACAAGAGGCGGCCGCGGATATCTGGGCTTAATGCTGAAGATGAATAGTGCATCTGTAGATAGGGGTTTAAAATTGCATATTTGCTATTTTATGTTTTGCTAATCCTTTGCCATAGAGGATGACTGCCCAGTGTCTTACGCTGGGGGAGGGTTTAGCCATTTCTATTGTAATATAGTGTAATTCGTGTAGCAAAATAGGTAGTTGATGGCCTTGACTGGAGGGCTATATGCTATGGGTCCATTGC</genome_strand>
        <mrna_strand>GGAATCCAAGAGGTAGACATGGATATGGAAGATGATGACTCATTTGGAGTGCCTTCCACTTTAGAGGAAGAGAATATTGAGAAGTTTACAGTACCTCCCCAAGAGGATATTCCAGCATGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATGTAAAGGATGATCAGGTTTTAGACCATGAGGAGGACCACCGAATAACTGAAGTAAAAGAATTGGCAAAGAGTAAATGGTCATCTGATTTGGATGAAGATAATACTCGAAGAAATAAAGATGCCACTAGAAACATAAATGCTCTCTCTGGGTTGATACAATCTTACAGCAAGGAAGGAAAGTTCGTACGTTGGGGTGACCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACCAAAAGAGGCTTTTCTATAGGGGCAGCAAAAGCAACCAATGTATCTTTAATAATTGGTCCTGGTGCAGGATACAACTTG....................................................................................................................................................................................................................AAGTCAAACCCTTTACCTGACGAAGAGAAGTTGACATCAACTCGACATAGTGGTGAACCAAAGAGGCAGAACATATTTCAAGAGAGATTACGAGCAGAGCACGAGTCGTTTAGGGCTGTTTTCGAGTCCTTCAGAACTGGTTCTGACAAGAGGCGGCCGCGGATATCTGGGCTTAATGCTGAAGATGAATAGTGCATCTGTAGATAGGGGTTTAAAATTGCATATTTGCTATTTTATGTTTTGCTAATCCTTTGCCATAGAGGATGACTGCCCAGTGTCTTACGCTGGGGGAGGGTTTAGCCATTTCTATTGTAATATAGTGTAATTCGTGTAGCAAAATAGGTAGTTGATGGCCTTGACTGGNAGGCTATATGCTATGGGTCCATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542418" ref_strand="+" ref_description="SGN-E542418 [TUS-63-L11]">
      <seq>ggaatccaagaggtagacatggatatggaagatgatgactcatttggagtgccttccactttagaggaagagaatattgagaagtttacagtacctccccaagaggatattccagcatgtggcgatgtaaaggatgatcaggttttagaccatgaggaggaccaccgaataactgaagtaaaagaattggcaaagagtaaatggtcatctgatttggatgaagataatactcgaagaaataaagatgccactagaaacataaatgctctctctgggttgatacaatcttacagcaaggaaggaaagttcgtacgttggggtgaccaggtaaccaaaagaggcttttctataggggcagcaaaagcaaccaatgtatctttaataattggtcctggtgcaggatacaacttgaagtcaaaccctttacctgacgaagagaagttgacatcaactcgacatagtggtgaaccaaagaggcagaacatatttcaagagagattacgagcagagcacgagtcgtttagggctgttttcgaatccttcagaactggctctgacaagaggcggccgcggatatctgggcttaatgctgaaaatgaatagtgcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77089" stop="80502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77380" g_stop="77499" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77500" i_stop="78077" i_length="578">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78078" g_stop="78283" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="327" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78284" i_stop="79707" i_length="1424">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79708" g_stop="79791" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="411" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79792" i_stop="80003" i_length="212">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80004" g_stop="80202" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="610" r_length="199" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E542418" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77380" e_stop="77499"/>
          <exon e_start="78078" e_stop="78283"/>
          <exon e_start="79708" e_stop="79791"/>
          <exon e_start="80004" e_stop="80202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATC-TGCAGGTAGACATGGATATGGAAGATGATGACTCATTTGGAGTGCCTTCCACTTTAGAGGAAGAGAATATTGAGAAGTTTACAGTACCTCCCCAAGAGGATATTCCAGCATGTGGTATGTCATGGATCTGTCCAAAGGGTCATTTGTATTTCTCATGCTGCTCCTGTATTGTCTCTCTTGTTGTATGTCCTAAGTTCTAGTTAGTAAACATTTGTTGTGATTAGCAAAGCGGGAATTCAGTTATGGTGGTTCTCCCTAATCAATTTGTGATGATTCTGGTGTAGATGGCATAGTTTCCTACCTTTGCAATAGATATCGCCAAATCAGTCCCTTCCTTTAAAATTTACATTTGTTGTAGTCACAGTAGGTCATGTGTTTGTTTTGAGGCTTAAAACAAGGCTGAGCTGATTTTAGCGTTTAATAACACAAAGGACCCGGCTTTTGTGGTGGTTGAACTTGGCTGATTTCGAAGTTCAACCGCTAACCCTTAGCTTTGACCATTGGGTGGAACCTATTTTCTTTTTCAATGCTGGTTATTTCTCAACATCGATTGGATTCTGTCTAACATTATTATTGGATCTCTTCAACTTTATGCATACCATTCTGAAGTAGATACAAACAAATTTGTCCTTTCTTCATTGTCTTGGCTACAAAAAGCATCTGATCATACTTATTATGTAATTTGATATCAGGCGATGTAAAGGATGATCAGGTTTTAGACCATGAGGAGGACCACCGAATAACTGAAGTAAAAGAATTGGCAAAGAGTAAATGGTCATCTGATTTGGATGAAGATAATACTCGAAGAAATAAAGATGCCACTAGAAACATAAATGCTCTCTCTGGGTTGATACAATCTTACAGCAAGGAAGGAAAGTTCGTACGTTGGGGTGACCAGGTAACTTTTACGACGGACGATAGCTATTCGTAGTTCTATATTGATGTGTTTTCTTACTGAGGGATGATTGGTGAAACTTATGTCCGCTCTCTGTTCTCTGCCTGCTTTCCCCTTTCTGCTTTTACTGATGTGCTCACCAGCAAAGGCTGACCTTTTTTCATTCGTCATATCTTTACTTTTTTCTCGTCCTGTCATCTCCTGACACTTTACATTAGCAAAGGTCTGGTAGATGAATTGTTGGGAAGACTCTACCCTTCCATCCTCAATGTTTTTCTTTGAAAAAGTGAATTTTTTAAAGAATGTAAACCAGGAGTCCTACATCTTTTAGAATGGAAATAGGAGTCCGGATTTATTTTTAAATAAAGAATGAGTTTCTCAACACTATAGGTTGTTTCGGTGTCTATATTCTCATATATCAGAAATGTAAATTGATTAAAAAAACTTGGAAGTGTACGGATTTTTATTCATTGGATTGGACATGTGGTATTTCAACAGTTCTTCCCTTGACAATATTATTGTGAATCGGGATGCAGTATAGTTCCTAGATAGCTGATATTGGTAACTTTGGGATGGCATAAAAACCTTGTTGTAAAGGCTTGTTTATTTTTCCAAGGGGAGGGAAGACTTGTAAGAATTCGATTAAGTGGCTCCATCTCGTTGCAAGGCTAAGTTGTTTTATGGGGGCAGATTTACTTATTATCAAATTACATTGGCACTAGGGGAGGGAAAAATCATTGGAGTGAAATAAGTGTTCCATCTCATTAAAAGCTGAAGTTGTTTGAAGGGGAAGTTCTCATTAGGCGTTGGCCGTGAATCATATTTGCATGCCTATTTATCCGTTATTAAGGTTGGTTATTCAATGATTTTTTCAGATGTTGGCATGTAACTTGTTTCAGTGTACTAACCTTATCTATATCCGGCTACCAAAAACTATGTTGTATACGTCTTGGAGAGGAAGTTGAAATTACATGCAGCTACTAATCTGATAATTGTTTGTTCGCCATCTGTTCTACTGTTCTTCTAAAAAGAGGCACTAGCTCAATTTCTTTGCCCCAAGTGTATGTTTGCTAGGGAAGGAAATTTCCCATTTTCGGTTAGTCAAAAAATTTGGGGAACTTTTTCTCTGGGAAAACAAGTTCCTTTAGAATGAGGAAAATGATTTCCCTTGTTTTCCACAAAGTGCCTTTCCACATTAATTGTGTCTTCTCCTCACCCTCCAACACACCTCATCTTCACTCCACAACCTTGTAGCTCCCATCCCACGCCCCAACCCTTACCTCCACCCTCACTTTTTGTATTTGTCTAGATTATATATAAATGCTTTTAGAATAATACTTTTTTGTTTTCCAAGAATATAAGTGGGTTTATTACTTATTCTCTTGTGTTCAGTACATACACACCTAAACTTATGTTACTTATCCCAGGTAACCAAAAGAGGCTTTTCTATAGGGGCAGCAAAAGCAACCAATGTATCTTTAATAATTGGTCCTGGTGCAGGATACAACTTGGTGAGATTCCTCATGCAACTATTGTTTAACTTGTTCGGCTCATCATTGTCTACATCTTGATGCTTATTGGCAATATTATGCTTGTAATTATGCTGCTTACCTTTCTAGAGTTTTTGTTATTGTAATACAACATTTAGTTTTGTAAACTACTTAAAATGGGATTTTGCATATACTTGGAACCCATATTATAGCTGGCCTATTGTCATTTTCAGAAGTCAAACCCTTTACCTGACGAAGAGAAGTTGACATCAACTCGACATAGTGGTGAACCAAAGAGGCAGAACATATTTCAAGAGAGATTACGAGCAGAGCACGAGTCGTTTAGGGCTGTTTTCGAGTCCTTCAGAACTGGTTCTGACAAGAGGCGGCCGCGGATATCTGGGCTTAATGCTGAAGATGAATAGTGCATCT</genome_strand>
        <mrna_strand>GGAATCCAAGAGGTAGACATGGATATGGAAGATGATGACTCATTTGGAGTGCCTTCCACTTTAGAGGAAGAGAATATTGAGAAGTTTACAGTACCTCCCCAAGAGGATATTCCAGCATGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATGTAAAGGATGATCAGGTTTTAGACCATGAGGAGGACCACCGAATAACTGAAGTAAAAGAATTGGCAAAGAGTAAATGGTCATCTGATTTGGATGAAGATAATACTCGAAGAAATAAAGATGCCACTAGAAACATAAATGCTCTCTCTGGGTTGATACAATCTTACAGCAAGGAAGGAAAGTTCGTACGTTGGGGTGACCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACCAAAAGAGGCTTTTCTATAGGGGCAGCAAAAGCAACCAATGTATCTTTAATAATTGGTCCTGGTGCAGGATACAACTTG....................................................................................................................................................................................................................AAGTCAAACCCTTTACCTGACGAAGAGAAGTTGACATCAACTCGACATAGTGGTGAACCAAAGAGGCAGAACATATTTCAAGAGAGATTACGAGCAGAGCACGAGTCGTTTAGGGCTGTTTTCGAATCCTTCAGAACTGGCTCTGACAAGAGGCGGCCGCGGATATCTGGGCTTAATGCTGAAAATGAATAGTGCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698867" ref_strand="+" ref_description="SGN-E698867 [FA07DD05]">
      <seq>ccctcagaggccccgagangnnnnggaggaagggggaatcccctaggaagacatggatatggaagatgatgactcatttggagtgccttccactttagaggaaaagaatattgagaagtttacagtacctccccaagaggatattccagcatgtggcgatgtaaaggatgatcaggttttagaccatgaggaggaccaccgaataactgaagtaaaagaattggcaaagagtaaatggtcatctgatttggatgaagataatactcgaagaaataaagatgccactagaaacataaatgttctctctgggttgatacaatcttacagcaaggaaggaaagttcgtacgttggggtgaccaggtaaccaaaagaggcttttctataggggcagcaaaagcaaccaatgtatctttaataattggtcctggtgcaggatacaacttgaagtcaaaccctttacctgacgaagagaagttgacatcaactcgacatagtggtgaaccaaagaggcagaacatatttcaagagagattacgagcagagcacgagtcgtttagggctgttttcgagtccttcagaactggttctgacaagaggcggccgcggatatctgggcttaatgctgaagatgaatagtgcatctgtagataggggtttaaaattgcatatttgcaattttatgttttgctaatcctttgccatagaggatgactgcccagtgtcttacgctgggggagggtttagccatttctattgtaatatagtgtaattcgtgtagcaaaataggtagttgatggccttgactggagggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77081" stop="80673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77391" g_stop="77499" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="155" r_length="109" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77500" i_stop="78077" i_length="578">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78078" g_stop="78283" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="361" r_length="206" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78284" i_stop="79707" i_length="1424">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79708" g_stop="79791" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="445" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79792" i_stop="80003" i_length="212">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80004" g_stop="80373" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="815" r_length="370" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E698867" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77391" e_stop="77499"/>
          <exon e_start="78078" e_stop="78283"/>
          <exon e_start="79708" e_stop="79791"/>
          <exon e_start="80004" e_stop="80373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGACATGGATATGGAAGATGATGACTCATTTGGAGTGCCTTCCACTTTAGAGGAAGAGAATATTGAGAAGTTTACAGTACCTCCCCAAGAGGATATTCCAGCATGTGGTATGTCATGGATCTGTCCAAAGGGTCATTTGTATTTCTCATGCTGCTCCTGTATTGTCTCTCTTGTTGTATGTCCTAAGTTCTAGTTAGTAAACATTTGTTGTGATTAGCAAAGCGGGAATTCAGTTATGGTGGTTCTCCCTAATCAATTTGTGATGATTCTGGTGTAGATGGCATAGTTTCCTACCTTTGCAATAGATATCGCCAAATCAGTCCCTTCCTTTAAAATTTACATTTGTTGTAGTCACAGTAGGTCATGTGTTTGTTTTGAGGCTTAAAACAAGGCTGAGCTGATTTTAGCGTTTAATAACACAAAGGACCCGGCTTTTGTGGTGGTTGAACTTGGCTGATTTCGAAGTTCAACCGCTAACCCTTAGCTTTGACCATTGGGTGGAACCTATTTTCTTTTTCAATGCTGGTTATTTCTCAACATCGATTGGATTCTGTCTAACATTATTATTGGATCTCTTCAACTTTATGCATACCATTCTGAAGTAGATACAAACAAATTTGTCCTTTCTTCATTGTCTTGGCTACAAAAAGCATCTGATCATACTTATTATGTAATTTGATATCAGGCGATGTAAAGGATGATCAGGTTTTAGACCATGAGGAGGACCACCGAATAACTGAAGTAAAAGAATTGGCAAAGAGTAAATGGTCATCTGATTTGGATGAAGATAATACTCGAAGAAATAAAGATGCCACTAGAAACATAAATGCTCTCTCTGGGTTGATACAATCTTACAGCAAGGAAGGAAAGTTCGTACGTTGGGGTGACCAGGTAACTTTTACGACGGACGATAGCTATTCGTAGTTCTATATTGATGTGTTTTCTTACTGAGGGATGATTGGTGAAACTTATGTCCGCTCTCTGTTCTCTGCCTGCTTTCCCCTTTCTGCTTTTACTGATGTGCTCACCAGCAAAGGCTGACCTTTTTTCATTCGTCATATCTTTACTTTTTTCTCGTCCTGTCATCTCCTGACACTTTACATTAGCAAAGGTCTGGTAGATGAATTGTTGGGAAGACTCTACCCTTCCATCCTCAATGTTTTTCTTTGAAAAAGTGAATTTTTTAAAGAATGTAAACCAGGAGTCCTACATCTTTTAGAATGGAAATAGGAGTCCGGATTTATTTTTAAATAAAGAATGAGTTTCTCAACACTATAGGTTGTTTCGGTGTCTATATTCTCATATATCAGAAATGTAAATTGATTAAAAAAACTTGGAAGTGTACGGATTTTTATTCATTGGATTGGACATGTGGTATTTCAACAGTTCTTCCCTTGACAATATTATTGTGAATCGGGATGCAGTATAGTTCCTAGATAGCTGATATTGGTAACTTTGGGATGGCATAAAAACCTTGTTGTAAAGGCTTGTTTATTTTTCCAAGGGGAGGGAAGACTTGTAAGAATTCGATTAAGTGGCTCCATCTCGTTGCAAGGCTAAGTTGTTTTATGGGGGCAGATTTACTTATTATCAAATTACATTGGCACTAGGGGAGGGAAAAATCATTGGAGTGAAATAAGTGTTCCATCTCATTAAAAGCTGAAGTTGTTTGAAGGGGAAGTTCTCATTAGGCGTTGGCCGTGAATCATATTTGCATGCCTATTTATCCGTTATTAAGGTTGGTTATTCAATGATTTTTTCAGATGTTGGCATGTAACTTGTTTCAGTGTACTAACCTTATCTATATCCGGCTACCAAAAACTATGTTGTATACGTCTTGGAGAGGAAGTTGAAATTACATGCAGCTACTAATCTGATAATTGTTTGTTCGCCATCTGTTCTACTGTTCTTCTAAAAAGAGGCACTAGCTCAATTTCTTTGCCCCAAGTGTATGTTTGCTAGGGAAGGAAATTTCCCATTTTCGGTTAGTCAAAAAATTTGGGGAACTTTTTCTCTGGGAAAACAAGTTCCTTTAGAATGAGGAAAATGATTTCCCTTGTTTTCCACAAAGTGCCTTTCCACATTAATTGTGTCTTCTCCTCACCCTCCAACACACCTCATCTTCACTCCACAACCTTGTAGCTCCCATCCCACGCCCCAACCCTTACCTCCACCCTCACTTTTTGTATTTGTCTAGATTATATATAAATGCTTTTAGAATAATACTTTTTTGTTTTCCAAGAATATAAGTGGGTTTATTACTTATTCTCTTGTGTTCAGTACATACACACCTAAACTTATGTTACTTATCCCAGGTAACCAAAAGAGGCTTTTCTATAGGGGCAGCAAAAGCAACCAATGTATCTTTAATAATTGGTCCTGGTGCAGGATACAACTTGGTGAGATTCCTCATGCAACTATTGTTTAACTTGTTCGGCTCATCATTGTCTACATCTTGATGCTTATTGGCAATATTATGCTTGTAATTATGCTGCTTACCTTTCTAGAGTTTTTGTTATTGTAATACAACATTTAGTTTTGTAAACTACTTAAAATGGGATTTTGCATATACTTGGAACCCATATTATAGCTGGCCTATTGTCATTTTCAGAAGTCAAACCCTTTACCTGACGAAGAGAAGTTGACATCAACTCGACATAGTGGTGAACCAAAGAGGCAGAACATATTTCAAGAGAGATTACGAGCAGAGCACGAGTCGTTTAGGGCTGTTTTCGAGTCCTTCAGAACTGGTTCTGACAAGAGGCGGCCGCGGATATCTGGGCTTAATGCTGAAGATGAATAGTGCATCTGTAGATAGGGGTTTAAAATTGCATATTTGCTATTTTATGTTTTGCTAATCCTTTGCCATAGAGGATGACTGCCCAGTGTCTTACGCTGGGGGAGGGTTTAGCCATTTCTATTGTAATATAGTGTAATTCGTGTAGCAAAATAGGTAGTTGATGGCCTTGACTGGAGGGCTA</genome_strand>
        <mrna_strand>GAAGACATGGATATGGAAGATGATGACTCATTTGGAGTGCCTTCCACTTTAGAGGAAAAGAATATTGAGAAGTTTACAGTACCTCCCCAAGAGGATATTCCAGCATGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATGTAAAGGATGATCAGGTTTTAGACCATGAGGAGGACCACCGAATAACTGAAGTAAAAGAATTGGCAAAGAGTAAATGGTCATCTGATTTGGATGAAGATAATACTCGAAGAAATAAAGATGCCACTAGAAACATAAATGTTCTCTCTGGGTTGATACAATCTTACAGCAAGGAAGGAAAGTTCGTACGTTGGGGTGACCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACCAAAAGAGGCTTTTCTATAGGGGCAGCAAAAGCAACCAATGTATCTTTAATAATTGGTCCTGGTGCAGGATACAACTTG....................................................................................................................................................................................................................AAGTCAAACCCTTTACCTGACGAAGAGAAGTTGACATCAACTCGACATAGTGGTGAACCAAAGAGGCAGAACATATTTCAAGAGAGATTACGAGCAGAGCACGAGTCGTTTAGGGCTGTTTTCGAGTCCTTCAGAACTGGTTCTGACAAGAGGCGGCCGCGGATATCTGGGCTTAATGCTGAAGATGAATAGTGCATCTGTAGATAGGGGTTTAAAATTGCATATTTGCAATTTTATGTTTTGCTAATCCTTTGCCATAGAGGATGACTGCCCAGTGTCTTACGCTGGGGGAGGGTTTAGCCATTTCTATTGTAATATAGTGTAATTCGTGTAGCAAAATAGGTAGTTGATGGCCTTGACTGGAGGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542409" ref_strand="+" ref_description="SGN-E542409 [TUS-63-L7](-)">
      <seq>gaaacataaatgctctctctgggttgatacaatcttacagcaaggaaggaaagttcgtacgttggggtgaccaggtaaccaaaagaggcttttctataggggcagcaaaagcaaccaatgtatctttaataattggtcctggtgcaggatacaacttgaagtcaaaccctttacctgacgaagagaagttgacatcaactcgacatagtggtgaaccaaagaggcagaacatatttcaagagagattacgagcagagcacgagtcgtttagggctgttttcgagtccttcagaactggttctgacaagaggcggccgcggatatctgggcttaatgctgaagatgaatagtgcatctgtagataggggtttaaaattgcatatttgctattttatgttttgctaatcctttgccatagaggatgactgcccagtgtcttacgctgggggagggtttagccatttctattgtaatatagtgtaattcgtgtagcaaaataggtagttgatggccttgactggagggctatatgctatgggtccattgcctctgtactactggaaattttggtaatgaaggttttcaatgatagaagtggttcattaagcaataaatggatgtatggaagacaaatatcttgtaatcattggcttggctcatgaaaacaattttgattcgggatgtttaagagcccgtttggactagcttaaaagttggtcaaagttacttttaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77910" stop="80878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78210" g_stop="78283" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78284" i_stop="79707" i_length="1424">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79708" g_stop="79791" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="158" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79792" i_stop="80003" i_length="212">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80004" g_stop="80577" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="732" r_length="574" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="733" polyA_stop="750"/>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E542409" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78210" e_stop="78283"/>
          <exon e_start="79708" e_stop="79791"/>
          <exon e_start="80004" e_stop="80577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACATAAATGCTCTCTCTGGGTTGATACAATCTTACAGCAAGGAAGGAAAGTTCGTACGTTGGGGTGACCAGGTAACTTTTACGACGGACGATAGCTATTCGTAGTTCTATATTGATGTGTTTTCTTACTGAGGGATGATTGGTGAAACTTATGTCCGCTCTCTGTTCTCTGCCTGCTTTCCCCTTTCTGCTTTTACTGATGTGCTCACCAGCAAAGGCTGACCTTTTTTCATTCGTCATATCTTTACTTTTTTCTCGTCCTGTCATCTCCTGACACTTTACATTAGCAAAGGTCTGGTAGATGAATTGTTGGGAAGACTCTACCCTTCCATCCTCAATGTTTTTCTTTGAAAAAGTGAATTTTTTAAAGAATGTAAACCAGGAGTCCTACATCTTTTAGAATGGAAATAGGAGTCCGGATTTATTTTTAAATAAAGAATGAGTTTCTCAACACTATAGGTTGTTTCGGTGTCTATATTCTCATATATCAGAAATGTAAATTGATTAAAAAAACTTGGAAGTGTACGGATTTTTATTCATTGGATTGGACATGTGGTATTTCAACAGTTCTTCCCTTGACAATATTATTGTGAATCGGGATGCAGTATAGTTCCTAGATAGCTGATATTGGTAACTTTGGGATGGCATAAAAACCTTGTTGTAAAGGCTTGTTTATTTTTCCAAGGGGAGGGAAGACTTGTAAGAATTCGATTAAGTGGCTCCATCTCGTTGCAAGGCTAAGTTGTTTTATGGGGGCAGATTTACTTATTATCAAATTACATTGGCACTAGGGGAGGGAAAAATCATTGGAGTGAAATAAGTGTTCCATCTCATTAAAAGCTGAAGTTGTTTGAAGGGGAAGTTCTCATTAGGCGTTGGCCGTGAATCATATTTGCATGCCTATTTATCCGTTATTAAGGTTGGTTATTCAATGATTTTTTCAGATGTTGGCATGTAACTTGTTTCAGTGTACTAACCTTATCTATATCCGGCTACCAAAAACTATGTTGTATACGTCTTGGAGAGGAAGTTGAAATTACATGCAGCTACTAATCTGATAATTGTTTGTTCGCCATCTGTTCTACTGTTCTTCTAAAAAGAGGCACTAGCTCAATTTCTTTGCCCCAAGTGTATGTTTGCTAGGGAAGGAAATTTCCCATTTTCGGTTAGTCAAAAAATTTGGGGAACTTTTTCTCTGGGAAAACAAGTTCCTTTAGAATGAGGAAAATGATTTCCCTTGTTTTCCACAAAGTGCCTTTCCACATTAATTGTGTCTTCTCCTCACCCTCCAACACACCTCATCTTCACTCCACAACCTTGTAGCTCCCATCCCACGCCCCAACCCTTACCTCCACCCTCACTTTTTGTATTTGTCTAGATTATATATAAATGCTTTTAGAATAATACTTTTTTGTTTTCCAAGAATATAAGTGGGTTTATTACTTATTCTCTTGTGTTCAGTACATACACACCTAAACTTATGTTACTTATCCCAGGTAACCAAAAGAGGCTTTTCTATAGGGGCAGCAAAAGCAACCAATGTATCTTTAATAATTGGTCCTGGTGCAGGATACAACTTGGTGAGATTCCTCATGCAACTATTGTTTAACTTGTTCGGCTCATCATTGTCTACATCTTGATGCTTATTGGCAATATTATGCTTGTAATTATGCTGCTTACCTTTCTAGAGTTTTTGTTATTGTAATACAACATTTAGTTTTGTAAACTACTTAAAATGGGATTTTGCATATACTTGGAACCCATATTATAGCTGGCCTATTGTCATTTTCAGAAGTCAAACCCTTTACCTGACGAAGAGAAGTTGACATCAACTCGACATAGTGGTGAACCAAAGAGGCAGAACATATTTCAAGAGAGATTACGAGCAGAGCACGAGTCGTTTAGGGCTGTTTTCGAGTCCTTCAGAACTGGTTCTGACAAGAGGCGGCCGCGGATATCTGGGCTTAATGCTGAAGATGAATAGTGCATCTGTAGATAGGGGTTTAAAATTGCATATTTGCTATTTTATGTTTTGCTAATCCTTTGCCATAGAGGATGACTGCCCAGTGTCTTACGCTGGGGGAGGGTTTAGCCATTTCTATTGTAATATAGTGTAATTCGTGTAGCAAAATAGGTAGTTGATGGCCTTGACTGGAGGGCTATATGCTATGGGTCCATTGCCTCTGTACTACTGGAAATTTTGGTAATGAAGGTTTTCAATGATAGAAGTGGTTCATTAAGCAATAAATGGATGTATGGAAGACAAATATCTTGTAATCATTGGCTTGGCTCATGAAAACAATTTTGATTCGGGATGTTTAAGAGCCCGTTTGGACTAGCTTAAAAGTTGGTCAAAGTTACTTTTA</genome_strand>
        <mrna_strand>GAAACATAAATGCTCTCTCTGGGTTGATACAATCTTACAGCAAGGAAGGAAAGTTCGTACGTTGGGGTGACCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACCAAAAGAGGCTTTTCTATAGGGGCAGCAAAAGCAACCAATGTATCTTTAATAATTGGTCCTGGTGCAGGATACAACTTG....................................................................................................................................................................................................................AAGTCAAACCCTTTACCTGACGAAGAGAAGTTGACATCAACTCGACATAGTGGTGAACCAAAGAGGCAGAACATATTTCAAGAGAGATTACGAGCAGAGCACGAGTCGTTTAGGGCTGTTTTCGAGTCCTTCAGAACTGGTTCTGACAAGAGGCGGCCGCGGATATCTGGGCTTAATGCTGAAGATGAATAGTGCATCTGTAGATAGGGGTTTAAAATTGCATATTTGCTATTTTATGTTTTGCTAATCCTTTGCCATAGAGGATGACTGCCCAGTGTCTTACGCTGGGGGAGGGTTTAGCCATTTCTATTGTAATATAGTGTAATTCGTGTAGCAAAATAGGTAGTTGATGGCCTTGACTGGAGGGCTATATGCTATGGGTCCATTGCCTCTGTACTACTGGAAATTTTGGTAATGAAGGTTTTCAATGATAGAAGTGGTTCATTAAGCAATAAATGGATGTATGGAAGACAAATATCTTGTAATCATTGGCTTGGCTCATGAAAACAATTTTGATTCGGGATGTTTAAGAGCCCGTTTGGACTAGCTTAAAAGTTGGTCAAAGTTACTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223534" ref_strand="+" ref_description="SGN-E223534 [cLEL-14-M12](-)">
      <seq>gttgacatcaactcgacatagtggtgaaccaaagaggcagaacatatttcaagagagattacgagcagagcacgagtcgtttagggctgttttcgagtccttcagaactggttctgacaagaggcggccgcggatatctgggcttaatgctgaagatgaatagtgcatctgtagataggggtttaaaattgcatatttgctattttatgttttgctaatcctttgccatagaggatgactgcccagtgtcttacgctgggggagggtttagccatttctattgtaatatagtgtaattcgtgtagcaaaataggtagttgatggccttgactggagggctatatgctatgggtccattgcctctgtactactggaaattttggtaatgaaggttttcaatgatagaagtggttcattaagcaataaatggatgtatggaagacaaatatcttgtaatcattggcttggctcatgaaaacaattttgattcgggatgtttaagagcccgtttggaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79733" stop="80846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80033" g_stop="80557" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E223534" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80033" e_stop="80557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGACATCAACTCGACATAGTGGTGAACCAAAGAGGCAGAACATATTTCAAGAGAGATTACGAGCAGAGCACGAGTCGTTTAGGGCTGTTTTCGAGTCCTTCAGAACTGGTTCTGACAAGAGGCGGCCGCGGATATCTGGGCTTAATGCTGAAGATGAATAGTGCATCTGTAGATAGGGGTTTAAAATTGCATATTTGCTATTTTATGTTTTGCTAATCCTTTGCCATAGAGGATGACTGCCCAGTGTCTTACGCTGGGGGAGGGTTTAGCCATTTCTATTGTAATATAGTGTAATTCGTGTAGCAAAATAGGTAGTTGATGGCCTTGACTGGAGGGCTATATGCTATGGGTCCATTGCCTCTGTACTACTGGAAATTTTGGTAATGAAGGTTTTCAATGATAGAAGTGGTTCATTAAGCAATAAATGGATGTATGGAAGACAAATATCTTGTAATCATTGGCTTGGCTCATGAAAACAATTTTGATTCGGGATGTTTAAGAGCCCGTTTGGACTAGCTTAAAA</genome_strand>
        <mrna_strand>GTTGACATCAACTCGACATAGTGGTGAACCAAAGAGGCAGAACATATTTCAAGAGAGATTACGAGCAGAGCACGAGTCGTTTAGGGCTGTTTTCGAGTCCTTCAGAACTGGTTCTGACAAGAGGCGGCCGCGGATATCTGGGCTTAATGCTGAAGATGAATAGTGCATCTGTAGATAGGGGTTTAAAATTGCATATTTGCTATTTTATGTTTTGCTAATCCTTTGCCATAGAGGATGACTGCCCAGTGTCTTACGCTGGGGGAGGGTTTAGCCATTTCTATTGTAATATAGTGTAATTCGTGTAGCAAAATAGGTAGTTGATGGCCTTGACTGGAGGGCTATATGCTATGGGTCCATTGCCTCTGTACTACTGGAAATTTTGGTAATGAAGGTTTTCAATGATAGAAGTGGTTCATTAAGCAATAAATGGATGTATGGAAGACAAATATCTTGTAATCATTGGCTTGGCTCATGAAAACAATTTTGATTCGGGATGTTTAAGAGCCCGTTTGGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223474" ref_strand="+" ref_description="SGN-E223474 [cLEL-14-M12](-)">
      <seq>tgctattttatgttttgctaatcctttgccatagaggatgactgcccagtgtcttacgctgggggagggtttagccatttctattgtaatatagtgtaattcgtgtagcaaaataggtagttgatggccttgactggagggctatatgctatgggtccattgcctctgtactactggaaattttggtaatgaaggttttcaatgatagaagtggttcattaagcaataaatggatgtatggaagacaaatatcttgtaatcattggcttggctcatgaaaacaattttgattcgggatgtttaagagcccgtttggaaaaaaaaaaaaaaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79930" stop="80846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80230" g_stop="80557" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E223474" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80230" e_stop="80557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTATTTTATGTTTTGCTAATCCTTTGCCATAGAGGATGACTGCCCAGTGTCTTACGCTGGGGGAGGGTTTAGCCATTTCTATTGTAATATAGTGTAATTCGTGTAGCAAAATAGGTAGTTGATGGCCTTGACTGGAGGGCTATATGCTATGGGTCCATTGCCTCTGTACTACTGGAAATTTTGGTAATGAAGGTTTTCAATGATAGAAGTGGTTCATTAAGCAATAAATGGATGTATGGAAGACAAATATCTTGTAATCATTGGCTTGGCTCATGAAAACAATTTTGATTCGGGATGTTTAAGAGCCCGTTTGGACTAGCTTAAAA</genome_strand>
        <mrna_strand>TGCTATTTTATGTTTTGCTAATCCTTTGCCATAGAGGATGACTGCCCAGTGTCTTACGCTGGGGGAGGGTTTAGCCATTTCTATTGTAATATAGTGTAATTCGTGTAGCAAAATAGGTAGTTGATGGCCTTGACTGGAGGGCTATATGCTATGGGTCCATTGCCTCTGTACTACTGGAAATTTTGGTAATGAAGGTTTTCAATGATAGAAGTGGTTCATTAAGCAATAAATGGATGTATGGAAGACAAATATCTTGTAATCATTGGCTTGGCTCATGAAAACAATTTTGATTCGGGATGTTTAAGAGCCCGTTTGGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364750" ref_strand="+" ref_description="SGN-E364750 [cLPT-4-O16]">
      <seq>tcatgtgccgggtaaagcgtcttgggaccatgccggttaagcgtgcctttgcaaataataagcagaaatgaccccctgtacctgatcaaggtggtaccttgctcgtagcaccagagttgtgacagctgcagatattgatccgctaacatggctggcttgcttaaaggttgaaggagaaaatgcatatcagttctgtttgcaacctccccattcgccggcattcattggaaaccacctccagagcagctatttcatcgggaccgcctcagcatttgtagtgaggctttagctggaacacgggctaggggtggatcagagcttctggatcttaatatagaacatgatttactatccagcgctaaggaccataatgagtttgctatagtacgggagtgcataagaagaagattggaggctgtgtgttcaagcgttataattgaaccaaagaaagcaataagaaaatttacaagagttcaacatctttacgctcgattgagggggagactccaggctgaagatgatgagtttaagatattgtcatcggtgcaccctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84739" stop="87751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85038" g_stop="85122" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.859"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85123" i_stop="85346" i_length="224">
            <donor d_prob="0.900" d_score="0.80"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85347" g_stop="85421" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="166" r_length="76" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85422" i_stop="85508" i_length="87">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85509" g_stop="85577" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="237" r_length="71" r_score="0.942"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85578" i_stop="86357" i_length="780">
            <donor d_prob="0.961" d_score="0.92"/>
            <acceptor a_prob="0.719" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86358" g_stop="86476" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="356" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86477" i_stop="86577" i_length="101">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86578" g_stop="86635" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="414" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="86636" i_stop="86906" i_length="271">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="86907" g_stop="87017" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="525" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="87018" i_stop="87421" i_length="404">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="87422" g_stop="87451" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="555" r_length="30" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E364750" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85038" e_stop="85122"/>
          <exon e_start="85347" e_stop="85421"/>
          <exon e_start="85509" e_stop="85577"/>
          <exon e_start="86358" e_stop="86476"/>
          <exon e_start="86578" e_stop="86635"/>
          <exon e_start="86907" e_stop="87017"/>
          <exon e_start="87422" e_stop="87451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGTGCCGGGTAAAGCGTCTTGGGACCATG-CGGTTAACCGTG-CTTTGCAAATAATAAGCAGAAATGA--CCCTGTA-CTGATCAAGGTTGTCAACCGCTTGTGTTTTCTAATCACTTATGCTCTTCACCTTTGACCTTATATTATACCAAAATATTGTTGTTTTACTGTAAAATAAAGTATTCCTGCTTGTTATGGAGGACTACAGAAGTAGCCAAAGTAAAATGAGATAATCTGATGCACACTTTAAGATATAGGTTCATAAAAAGTAAGTTTAGGTGGTTTTGACACGCATACCTTTTCTTAAAACAGGTGGTA-CTTGCTCGTAGCACCAGAGTTGTGACAGCTGCAGATATTGATCCACTAACATGGCTGGCTTGCTTAAAGGTGTTCATTACCCACCTTATTTTTTTGAATACTTCACTAGCATATTTTCTCTTACTTTTGATAAAATATAGAGGGTTAAGTTTGCAGGTTGAAGGAGAAAATGCATATCAGTTCTGTTTGCAACCTCCCCATTCGCCGGCATTCATTGGAAA-CA-CTGTAAGTCAGAAGACTTTCTCAATAACTAAATGGTGTCATGAAGCAATGTAAAAGGTGAAGTCCGTGTAGTCTGTTTTATGTTCTTCAATTGATAGATCACATTAATTCTTTGGTGTGCATCCTATCAAAGTAGTTGCTAGTTGCTCCAGGTGAAATGAAATTATTATCACATGAAGCAAAATACTTTTGAATTGTTATATATCGCAGCTTCTGTTATATCATCAAATATATAAAGTGTTATTTTGACCAAAAATATAATTTCTGTGATGGTGTATCTGGTAAAAGTCAAAAAAGAAATATGTTAATTATGCTTAAACTTTAAAAATGTTCCAGTATGAAATCCTGAAGGTATGGTCTTTAATGTTGGAAGAATTCCAAGTCAAATTTCCTGACCAGTGGCCACTATCATTTTAAAGCCTGATCACAACCATTCCTAATGCGCTCAAGAATTTCAGAATAGACTCTTACTAAATATCTGACGACTGAGCTTTCTTAAAATTTGCTTTGACTACAGCTGTTGTAAATACACATGGCAAGTCTGGCTGATAATTTATACTGGTGACAGCTGGATACTTGTGACGAATCATCTATAATAAGTTGAAGTAATCAGAACCCATACCCACCCCCTTCTATTGATCCGAAGCATCAAGCTCACTTTTGAAACTCTCTAGTGCCAATTATTAGCTGTGGTAGCAAAAACATCTGAATCTTTTGTACACTTATTAGAAACGGTGAGGACATAGAACAATTTTATTTATTACTTATGCTCTTTTTGAATAGCCAGAGCAGCTATTTCATCGGGACCGCCTCAGCATTTGTAGTGAGGCTTTAGCTGGAACACGGGCTAGGGGTGGATCAGAGCTTCTGGATCTTAATATAGAACAGGATTTACTATCCAGGTTCATCTTTCTGCTTTATGTTCTATAAAAAGCACTAGGTCACTATTATACTTATTTTTTTATTGGTGTATTGTTTACTATATTCTTATATTTTCTTACAGCGCTAAGGACCATAATGAGTTTGCTATAGTACGGGAGTGCATAAGAAGAAGATTGGAGGTAAGCTTGGTTAAGAGGTTTCTGAACAGAATCTTAAGAAATTTCATAAGGGAAAAAGAAATTTTGAGATCTCTAATTGGGGGATTGCACTTGTTCATTTTAGTTTGGTGACATGTACATTTAATTTGACTTTTTAATAATTTTGATGTCAAACTTGAACTATTCCGGCCCTGGAATTTCTATAGTTCCTAATCCACTTTTAGGACATCTCAGGAACCCTTCATGTTGTATAAAACTAGTTGGCCTCTCTTAACATTATTTCGTTTCATAGGCTGTGTGTTCAAGCGTTATAATTGAACCAAAGAAAGCAATAAGAAAATTTACAAGAGTTCAACATCTTTACGCTCGATTGAGGGGGAGACTCCAGGCTGAAGATGATGAGGTAAGTCTTGACGTCTTCTATCCCATTCATTACTTACCGAGTTTTAGTTGATGCAGGGCCTTATGAGACTCTTTAATGTAGACAGGGAAAGTTTGCATGATAGCCTTGTTTATGGTTTCTTCAAACTTTTGTTGTTCCCCCTGATTGGGACTGGTGGAGTTGGTTTTCATTGTTCTTGAGGGTTATCGTATGTTTTATGAGAACCAAAACTGAATGAAGCATCTATTAGCATTTCAACCGACATTCTTCTTGAATTAGTTCATAATTACTCCCTTTAGTTGGCAAAAACTATAATTCTGAATCTCTATTATCCATAAAGATGTGGTGATGATATGTATAGATCATTTTATTGCTTTTTCTGTTCCTTCTATAAAGCACCACACTAAGCATCTACAGTTTTCCAGTTTAAGATATTGTCATCCGTGCACCCTACT</genome_strand>
        <mrna_strand>TCATGTGCCGGGTAAAGCGTCTTGGGACCATGCCGGTTAAGCGTGCCTTTGCAAATAATAAGCAGAAATGACCCCCTGTACCTGATCAAG................................................................................................................................................................................................................................GTGGTACCTTGCTCGTAGCACCAGAGTTGTGACAGCTGCAGATATTGATCCGCTAACATGGCTGGCTTGCTTAAAG.......................................................................................GTTGAAGGAGAAAATGCATATCAGTTCTGTTTGCAACCTCCCCATTCGCCGGCATTCATTGGAAACCACCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAGCAGCTATTTCATCGGGACCGCCTCAGCATTTGTAGTGAGGCTTTAGCTGGAACACGGGCTAGGGGTGGATCAGAGCTTCTGGATCTTAATATAGAACATGATTTACTATCCAG.....................................................................................................CGCTAAGGACCATAATGAGTTTGCTATAGTACGGGAGTGCATAAGAAGAAGATTGGAG...............................................................................................................................................................................................................................................................................GCTGTGTGTTCAAGCGTTATAATTGAACCAAAGAAAGCAATAAGAAAATTTACAAGAGTTCAACATCTTTACGCTCGATTGAGGGGGAGACTCCAGGCTGAAGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGATATTGTCATCGGTGCACCCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745051" ref_strand="+" ref_description="SGN-E745051 [GI|76009222]">
      <seq>tttcatcgggaccgcctcagcatttgtagtgaggctttagctggaacacgggctaggggtggatcagagcttctggatcttaatatagaacaggatttactatccagcgctaaggaccataatgagtttgctatagtacgggagtgcataagaagaagattggaggctgtgtgttcaagcgttataattgaaccaaagaaagcaataagaaaatttacaagagttcaacatctttacgctcgattgagggggagactccaggctgaagatgatgagtttaagatattgtcatccgtgcaccctactccagcagtttgtgggtatcctacagaagatgcacgggcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="+" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86070" stop="87792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86370" g_stop="86476" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86477" i_stop="86577" i_length="101">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86578" g_stop="86635" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="165" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86636" i_stop="86906" i_length="271">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86907" g_stop="87017" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="276" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87018" i_stop="87421" i_length="404">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87422" g_stop="87493" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="348" r_length="72" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="+" ref_id="SGN-E745051" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86370" e_stop="86476"/>
          <exon e_start="86578" e_stop="86635"/>
          <exon e_start="86907" e_stop="87017"/>
          <exon e_start="87422" e_stop="87493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCGGGACCGCCTCAGCATTTGTAGTGAGGCTTTAGCTGGAACACGGGCTAGGGGTGGATCAGAGCTTCTGGATCTTAATATAGAACAGGATTTACTATCCAGGTTCATCTTTCTGCTTTATGTTCTATAAAAAGCACTAGGTCACTATTATACTTATTTTTTTATTGGTGTATTGTTTACTATATTCTTATATTTTCTTACAGCGCTAAGGACCATAATGAGTTTGCTATAGTACGGGAGTGCATAAGAAGAAGATTGGAGGTAAGCTTGGTTAAGAGGTTTCTGAACAGAATCTTAAGAAATTTCATAAGGGAAAAAGAAATTTTGAGATCTCTAATTGGGGGATTGCACTTGTTCATTTTAGTTTGGTGACATGTACATTTAATTTGACTTTTTAATAATTTTGATGTCAAACTTGAACTATTCCGGCCCTGGAATTTCTATAGTTCCTAATCCACTTTTAGGACATCTCAGGAACCCTTCATGTTGTATAAAACTAGTTGGCCTCTCTTAACATTATTTCGTTTCATAGGCTGTGTGTTCAAGCGTTATAATTGAACCAAAGAAAGCAATAAGAAAATTTACAAGAGTTCAACATCTTTACGCTCGATTGAGGGGGAGACTCCAGGCTGAAGATGATGAGGTAAGTCTTGACGTCTTCTATCCCATTCATTACTTACCGAGTTTTAGTTGATGCAGGGCCTTATGAGACTCTTTAATGTAGACAGGGAAAGTTTGCATGATAGCCTTGTTTATGGTTTCTTCAAACTTTTGTTGTTCCCCCTGATTGGGACTGGTGGAGTTGGTTTTCATTGTTCTTGAGGGTTATCGTATGTTTTATGAGAACCAAAACTGAATGAAGCATCTATTAGCATTTCAACCGACATTCTTCTTGAATTAGTTCATAATTACTCCCTTTAGTTGGCAAAAACTATAATTCTGAATCTCTATTATCCATAAAGATGTGGTGATGATATGTATAGATCATTTTATTGCTTTTTCTGTTCCTTCTATAAAGCACCACACTAAGCATCTACAGTTTTCCAGTTTAAGATATTGTCATCCGTGCACCCTACTCCAGCAGTTTGTGGGTATCCTACAGAAGATGCACGGGCTTTT</genome_strand>
        <mrna_strand>TTTCATCGGGACCGCCTCAGCATTTGTAGTGAGGCTTTAGCTGGAACACGGGCTAGGGGTGGATCAGAGCTTCTGGATCTTAATATAGAACAGGATTTACTATCCAG.....................................................................................................CGCTAAGGACCATAATGAGTTTGCTATAGTACGGGAGTGCATAAGAAGAAGATTGGAG...............................................................................................................................................................................................................................................................................GCTGTGTGTTCAAGCGTTATAATTGAACCAAAGAAAGCAATAAGAAAATTTACAAGAGTTCAACATCTTTACGCTCGATTGAGGGGGAGACTCCAGGCTGAAGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGATATTGTCATCCGTGCACCCTACTCCAGCAGTTTGTGGGTATCCTACAGAAGATGCACGGGCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365081" ref_strand="+" ref_description="SGN-E365081 [cLPP-17-G15]">
      <seq>ttaaacaaaaaactcacaaaaatttcaagtaaagagagagaagaatgtgcttacaaatatagctacctataattgaaaaatggtaactctcataaataggtcgagtttctttgtaattttgtgcacactattttttagcattgaggctaatattggagagtttgatgaggtgtggaggactcgagccacccaagcaaataaaaatgctaaagaatcctataatcctaatcctgaaaaagttgcagctaatttcaacaaacatgttcacaggtcggaagaaggtagcaatagcacaagaagggacttgcacaagtacaatggtccatgtgtggctactaaccctattgatcgttgctggagatgtgacccacattgggctaaaaatcgccagaagctagcagattgtgttctaggatttggtcatcatacgactggtggcaaaggtggcaaaatctacgaagtaactgaccctggggacaccgatatggtgaatcctaagcaagggacactgcgccatgcagtcattcagccagggccactatggatcatatttgcacatcacatggtcattaagctaaaccaagaacttattatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92056" stop="90707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91754" g_stop="91502" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="270" r_length="253" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91501" i_stop="91333" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91332" g_stop="91007" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="596" r_length="326" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E365081" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91754" e_stop="91502"/>
          <exon e_start="91332" e_stop="91007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTCAAGTAAAGAGAGAGAAGAATGTGCTTACAAATATAGCAACCCATAATTGAAAAATGGTAACTCTCATAAATAGGTCGAGTTTCTTTGTAATTTTGTGCACACTATTTTTTAGCATTGAGGCTAATATTGGAGAGTTTGATGAGGTGTGGAGGACTCGAGCCACCCAAGCAAATAAAAATGCTAAAGAATCCTATAATCCTAATCCTGAAAAAGTTGCAGCTAATTTCAACAAACATGTTCACAGGTATTTTTGAACACCTTTTTGCTGCTAGTTACACGTCCATGAGATTCAATAATCAATATATATATATATAATATATATATACACACACACACTAGTAAAAGGATTCACCTAGGCAAGTTTTTTCATGGTACAGTCAACCATCACATTTTCATCTTATTTTGATTTGTAGGTCGGAAGAAGGTAGCAATAGCACAAGAAGGGACTTGCACAAGTACAATGGTCCATGCGTGGCTACAAACCCTATTGATCGTTGCTGGAGATGTGACCCACATTGGGCTAAAAATCGCCAGAAGCTAGCAGATTGTGTTCTAGGATTTGGCCATCATACGACTGGTGGCAAAGGTGGCAAAATCTACGAAGTAACTGACCCTGGGGACACCGATATGGTGAATCCTAAGCAAGGGACACTGCGCCATGCAGTCATTCAGCCAGGGCCACTATGGATCATATTTGCACATCACATGGTCATTAAGCTAAACCAAGAACTTATTATGA</genome_strand>
        <mrna_strand>AAAAATTTCAAGTAAAGAGAGAGAAGAATGTGCTTACAAATATAGCTACCTATAATTGAAAAATGGTAACTCTCATAAATAGGTCGAGTTTCTTTGTAATTTTGTGCACACTATTTTTTAGCATTGAGGCTAATATTGGAGAGTTTGATGAGGTGTGGAGGACTCGAGCCACCCAAGCAAATAAAAATGCTAAAGAATCCTATAATCCTAATCCTGAAAAAGTTGCAGCTAATTTCAACAAACATGTTCACAG.........................................................................................................................................................................GTCGGAAGAAGGTAGCAATAGCACAAGAAGGGACTTGCACAAGTACAATGGTCCATGTGTGGCTACTAACCCTATTGATCGTTGCTGGAGATGTGACCCACATTGGGCTAAAAATCGCCAGAAGCTAGCAGATTGTGTTCTAGGATTTGGTCATCATACGACTGGTGGCAAAGGTGGCAAAATCTACGAAGTAACTGACCCTGGGGACACCGATATGGTGAATCCTAAGCAAGGGACACTGCGCCATGCAGTCATTCAGCCAGGGCCACTATGGATCATATTTGCACATCACATGGTCATTAAGCTAAACCAAGAACTTATTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365164" ref_strand="+" ref_description="SGN-E365164 [cLPP-17-H3]">
      <seq>ttaaacaaacaactcacaaaaatgtgggtcccgagagagaataatgcgcttacaaatatagcttcctataattgaaaaatggtaactctcataaataagtggagtatctttgtaatttacgtcgcacactattttttagcattgaggctaatattggagagtttgatgatgtgtggaagactcgagccacccaagctaataaaaatgctcacgaatcctatggtcctaatcctgaaaaaggcgcagctaatttcaacaaacatgttcacaagtctgaagaaggtagctatttcacaagacgggactcgcacaagtacaatggtccatgtgtggctactaaccctatcgatcgttgctggagatgtgacccacattgggctaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92038" stop="90918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91737" g_stop="91502" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="271" r_length="238" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91501" i_stop="91333" i_length="169">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91332" g_stop="91218" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="386" r_length="115" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E365164" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91737" e_stop="91502"/>
          <exon e_start="91332" e_stop="91218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAAGAATGTGCTTACAAATATAGCAACCCATAATTGAAAAATGGTAACTCTCATAAATAGGTCGAGTTTCTTTGTAATTT-TGT-GCACACTATTTTTTAGCATTGAGGCTAATATTGGAGAGTTTGATGAGGTGTGGAGGACTCGAGCCACCCAAGCAAATAAAAATGCTAAAGAATCCTATAATCCTAATCCTGAAAAAGTTGCAGCTAATTTCAACAAACATGTTCACAGGTATTTTTGAACACCTTTTTGCTGCTAGTTACACGTCCATGAGATTCAATAATCAATATATATATATATAATATATATATACACACACACACTAGTAAAAGGATTCACCTAGGCAAGTTTTTTCATGGTACAGTCAACCATCACATTTTCATCTTATTTTGATTTGTAGGTCGGAAGAAGGTAGCAATAGCACAAGAAGGGACTTGCACAAGTACAATGGTCCATGCGTGGCTACAAACCCTATTGATCGTTGCTGGAGATGTGACCCACATTGGGCTAAAAAT</genome_strand>
        <mrna_strand>AGAGAGAATAATGCGCTTACAAATATAGCTTCCTATAATTGAAAAATGGTAACTCTCATAAATAAGTGGAGTATCTTTGTAATTTACGTCGCACACTATTTTTTAGCATTGAGGCTAATATTGGAGAGTTTGATGATGTGTGGAAGACTCGAGCCACCCAAGCTAATAAAAATGCTCACGAATCCTATGGTCCTAATCCTGAAAAAGGCGCAGCTAATTTCAACAAACATGTTCACAA.........................................................................................................................................................................GTCTGAAGAAGGTAGCTATTTCACAAGACGGGACTCGCACAAGTACAATGGTCCATGTGTGGCTACTAACCCTATCGATCGTTGCTGGAGATGTGACCCACATTGGGCTAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267182" ref_strand="-" ref_description="SGN-E267182 [cLEI-4-O17]">
      <seq>aaagatgcatgcacatttaacagctgctgtggtttccaatgatatattgttcctgcaaaaagtgattggaaattcagttaatggaaccacttatgctggattgagagcaagaacaacaggggctccccagaatcactggtttggtcctgccggggaccccagaggagccggaataggtactccagaagctattaaacttgtatggtcttgccacagagaaatcatctatgatgttggtcccatgccactaggatggaaagttcctgcatctacttgaggaaccaactgctaccactcaaagcactcgaggatcgcgttcaaagagcctaacgttagaattccttggagagaatccagttgtggataatggaagaattagtttggttaacacaaaatcaagtggaatgctatttgagtgcatatgtttgtgcagacatatgagcagccagcttatactacatatctaataaataagctagttatttcggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98557" stop="96492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98257" g_stop="98200" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98199" i_stop="97313" i_length="887">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97312" g_stop="97233" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="138" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97232" i_stop="97146" i_length="87">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97145" g_stop="96786" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="498" r_length="360" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E267182" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267182" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="98257" e_stop="98200"/>
          <exon e_start="97312" e_stop="97233"/>
          <exon e_start="97145" e_stop="96786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAAGTAAGAAAATGTTCCCGTTTCTATTGAAATATCTGTTGCTCTATATACAACTTAAAATGTTTCACGTGCAACTAGCAGAAAATATCTCGAATTCTTTCTCTAGAAAGCATCCAGAATTTGTACATAAACTTATTTTTTGTACTTCATCGGATGAATCTAGAATAGAAAAGGCAATAACAGCACGAAAGATGCCAATGCCAAATCAGTTGTCGTTCCCTACCGAAGAAAATTTGTAGATCAAAACTGTTGAATTTTCTATTATGTCCCAAAAGTCAGTGTAGGAGGAGGGAAGGAAGGTGAGAAGAGAGGTGTAGTGTTCACTGTTAACTTACATGAAGCATTTGTAGTAATGCTGTTTGCTATTTTACCTTACTGTAGAATTGAAGAGCCACAGAGAAGGGAAAGAGACGAAATTTTGCTAGTCTCATATCTATAAAACCTCAGGAAGATACAAAAGTTTGGATAGTCCTAAATAGAATCAGGACACAGTACCAAAGAAAATCAAACTATATTGCTATACGTTATACTAGCCAGGGGTTCAGGGCTGAATCACCTCCATCAATTGTCTAATCTGCTGTTTAGATTAGTTTCTGTATATAACATTAAGGCACGTTGAACAAAAGAAGTTTAGATTCAGACTTGGGAACTTAAACCTTTATAATACATTTTGACTTATTGAATTGTTTGCATCATTTAGAACTTAGAATTTAGCATTGAGTGATAATGATAAAGTTGCTATGCTTTGTTGTTAAGATGGCTGGCATTTCTATCACGAAAAGAAAAAAACGAGAGAAATGAAAAGACTTGAGATTTGAAAAGCTTTATTAGCTATACCCCTATATGTACATGATTATGTAGTTATTTCAATTGTGAAATTCCCTTTTCAGAAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACAGGGGCTCCCCAGAATCACTGGTCAGCAACTTCTTATCATCTTCTATCTGTTATTGTAAATACACCTATTTAGCTTATTAACTCTCCTAAACAATGCCCATAATGTAGGTTTGGTCCTGCCGGGGACCCCAGAGGAGCCGGAATAGGTACTCCAGAAGCTATTAAACTTGTATGGTCTTGCCACAGAGAAATCATCTATGATGTTGGTCCCATGCCACTAGGATGGAAAGTTCCTGCATCTACTTGAGGAACCAACTGCTACCACTCAAAGCACTCGAGGATCGCGTTCAAAGAGCCTAACGTTAGAATTCCTTGGAGAGAATCCAGTTGTGGATAATGGAAGAATTAGTTTGGTTAACACAAAATCAAGTGGAATGCTATTTGAGTGCATATGTTTGTGCAGACATATGAGCAGCCAGCTTATACTACATATCTAATAAATAAGCTAGTTATTTCGGATAATTTGCT</genome_strand>
        <mrna_strand>AAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACAGGGGCTCCCCAGAATCACTG.......................................................................................GTTTGGTCCTGCCGGGGACCCCAGAGGAGCCGGAATAGGTACTCCAGAAGCTATTAAACTTGTATGGTCTTGCCACAGAGAAATCATCTATGATGTTGGTCCCATGCCACTAGGATGGAAAGTTCCTGCATCTACTTGAGGAACCAACTGCTACCACTCAAAGCACTCGAGGATCGCGTTCAAAGAGCCTAACGTTAGAATTCCTTGGAGAGAATCCAGTTGTGGATAATGGAAGAATTAGTTTGGTTAACACAAAATCAAGTGGAATGCTATTTGAGTGCATATGTTTGTGCAGACATATGAGCAGCCAGCTTATACTACATATCTAATAAATAAGCTAGTTATTTCGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215697" ref_strand="+" ref_description="SGN-E215697 [cLEL-15-F2](-)">
      <seq>tgttggtcccatgccactaggatggaaagttcctgcatctgcttgaggaaccaactgctaccactcaaagcactcgaggatcgcgttcaaagagcctaacgttagaattccttggagagaatccagttgtggataatggaagaattagtttggttaacacaaaatcaagtggaatgctatttgagtgcatatgtttgtgcagacatatgagcagccagcttatactacatatctaataaataagctagttatttcggataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="97352" stop="96492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97052" g_stop="96793" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="261" polyA_stop="275"/>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E215697" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>260</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97052" e_stop="96793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGGTCCCATGCCACTAGGATGGAAAGTTCCTGCATCTACTTGAGGAACCAACTGCTACCACTCAAAGCACTCGAGGATCGCGTTCAAAGAGCCTAACGTTAGAATTCCTTGGAGAGAATCCAGTTGTGGATAATGGAAGAATTAGTTTGGTTAACACAAAATCAAGTGGAATGCTATTTGAGTGCATATGTTTGTGCAGACATATGAGCAGCCAGCTTATACTACATATCTAATAAATAAGCTAGTTATTTCGGATA</genome_strand>
        <mrna_strand>TGTTGGTCCCATGCCACTAGGATGGAAAGTTCCTGCATCTGCTTGAGGAACCAACTGCTACCACTCAAAGCACTCGAGGATCGCGTTCAAAGAGCCTAACGTTAGAATTCCTTGGAGAGAATCCAGTTGTGGATAATGGAAGAATTAGTTTGGTTAACACAAAATCAAGTGGAATGCTATTTGAGTGCATATGTTTGTGCAGACATATGAGCAGCCAGCTTATACTACATATCTAATAAATAAGCTAGTTATTTCGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745136" ref_strand="+" ref_description="SGN-E745136 [GI|47105992]">
      <seq>ggttttgttacaataatgtaatggtgttttgaaggaatcacttttaataggttaaaattgttctttagaagcgtttacaatttgattattgtaatctttgataaattttgtgcatagggtaggatgtataaagaactttaccttatctttgtggtgacagagatgttgttttcgataaaatctaagctttagttttttaaaaactaccattttggaaattattagtttaaattctgttcattccagtccatccgttggtagtttttacgaaggttcattatatcgtcctttatctgggcttgagactaccaatgtgttgtgtgactatctttttttcttttctaaaccaattgttttaacagaacctgaagtcccttccatcttttttagttagtgctactattttttcgctattaagattttattccctaaggattcaaaacgaaaaatgtcgtcttttttatgttatggatggatgatttcttgtatttgattcttccttattgggcgtctacattatcatgatatggacttcttgttatcagtgtaaatgctgcttaactagtatttctttttctactgaattacggttctgggtagtctcaaccttctgttttgagataatcaattgacgtgtatggaccaagcggacggtgttgttttagagtcattcagacattgtgatttaatctttcataatgcagatcaaaccacactttgtcttttgctactgtaaaagctgaagaagtatcaggctctcaacctgctgaagttcacaacttggtgcagggcaagtggacaaaatcttctagttggaatacaatattggatcccttgaatgggcagccgttcattaaagttgcagaagtaaatgaatcagaactgcagccgtttgtggagagcttgtccaagtgcccgaaacatggtctacataatccattcaaagcaccagaaaggtacttaatgttaggagacgtatctacaaaagcagctcatgcgcttggcttgcctgaggtttctgatttctttgcgaagctaatacaaagggtgtctcctaagagttaccaacaagctcttgttgaagttctcgtgacgcagaaatttctggaaaatttctgtggtgatcaggttcgctttctagctagatcttttgcagtaccaggaaatcatctggggcagcagagccatggtttccgatggccttatggacctgtagcggttattgctccctttaattttcctttggagattcctttgcttcagctgatgggagcgttgtatatgggaaataagccagtacttaaagttgatagcaaggtatgcattgttatggaacaagtgcttcgactacttcatgagtgtgggttacctgtggatgatgtggatttcataaactcagatggaaagacaatgaacaagctactcgtggaggcaaaaccacgcatgactctcttcacaggtagctcaagggtggcagagaagttagctgatgacctaagcggtcgagtcaaactagaagatgctggattcgactggaagatccttgggcccgatgtcaatgaggtggattacgttgcatgggtttgtgaccaagatgcatatgcatgtagtggtcagaagtgttcagctgaatcaatattgttcatgcatgagaattggagtaaaagttctctcttagacaaaatgaccgagcttgctgcaagaagaaagttagatgatttaactattggtcctgtccttacggttacaactgaaacaatgctggaccatgcgaagaaattacttcagatacctggatcgagattgctctttggtggtgaagccttacagaaccattcgatcccaaaaatttatggagccattaagcccactgctatttttgtacctcttgaagaaatactcaaagatgaacattatcctctcgtgaccaaagagatttttgggccattccaggttgtgactgagtacaaagataatcagcttccactggtcctcgatgcccttgaaaagatgcatgcacatttaacagctgctgtggtttccaatgatatattgttcctgcaaaaagtgattggaaattcagttaatggaaccacttatgctggattgagagcaagaacaacaggggctccccagaatcactggtttggtcctgccggggaccccagaggagccggaataggtactccagaagctattaaacttgtatggtcttgccacagagaaatcatctatgatgttggtcccatgccactaggatggaaagttcctgcatctacttgaggaaccaactgctaccactcaaagcactcgaggatcgcgttcaaagagcctaacgttagaattccttggagagaatccagttgtggataatggaagaattagtttggttaacacaaaatcaagtggaatgctatttgagtgcatatgtttgtgcagacatatgagcagccagcttatactacatatctaataaataagctagttatttcggaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103322" stop="96492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103023" g_stop="102240" g_length="784"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="784" r_length="784" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102239" i_stop="101927" i_length="313">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101926" g_stop="101823" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="785" r_stop="888" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101822" i_stop="101615" i_length="208">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101614" g_stop="101547" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="889" r_stop="956" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101546" i_stop="101406" i_length="141">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101405" g_stop="101348" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="957" r_stop="1014" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101347" i_stop="101223" i_length="125">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101222" g_stop="101109" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1015" r_stop="1128" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101108" i_stop="100754" i_length="355">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100753" g_stop="100670" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1129" r_stop="1212" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="100669" i_stop="100330" i_length="340">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="100329" g_stop="100225" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1213" r_stop="1317" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="100224" i_stop="99958" i_length="267">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.633" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="99957" g_stop="99844" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1318" r_stop="1431" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="99843" i_stop="99504" i_length="340">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="99503" g_stop="99372" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1432" r_stop="1563" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="99371" i_stop="99276" i_length="96">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="99275" g_stop="99186" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1564" r_stop="1653" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="99185" i_stop="99030" i_length="156">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="99029" g_stop="98940" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1654" r_stop="1743" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="98939" i_stop="98602" i_length="338">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="98601" g_stop="98392" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1744" r_stop="1953" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="98391" i_stop="98311" i_length="81">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="98310" g_stop="98200" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1954" r_stop="2064" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="98199" i_stop="97313" i_length="887">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="97312" g_stop="97233" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="2065" r_stop="2144" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="97232" i_stop="97146" i_length="87">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="97145" g_stop="96796" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="2145" r_stop="2494" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2495" polyA_stop="2510"/>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E745136" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2494</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103023" e_stop="102240"/>
          <exon e_start="101926" e_stop="101823"/>
          <exon e_start="101614" e_stop="101547"/>
          <exon e_start="101405" e_stop="101348"/>
          <exon e_start="101222" e_stop="101109"/>
          <exon e_start="100753" e_stop="100670"/>
          <exon e_start="100329" e_stop="100225"/>
          <exon e_start="99957" e_stop="99844"/>
          <exon e_start="99503" e_stop="99372"/>
          <exon e_start="99275" e_stop="99186"/>
          <exon e_start="99029" e_stop="98940"/>
          <exon e_start="98601" e_stop="98392"/>
          <exon e_start="98310" e_stop="98200"/>
          <exon e_start="97312" e_stop="97233"/>
          <exon e_start="97145" e_stop="96796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTGTTACAATAATGTAATGGTGTTTTGAAGGAATCACTTTTAATAGGTTAAAATTGTTCTTTAGAAGCGTTTACAATTTGATTATTGTAATCTTTGATAAATTTTGTGCATAGGGTAGGATGTATAAAGAACTTTACCTTATCTTTGTGGTGACAGAGATGTTGTTTTCGATAAAATCTAAGCTTTAGTTTTTTAAAAACTACCATTTTGGAAATTATTAGTTTAAATTCTGTTCATTCCAGTCCATCCGTTGGTAGTTTTTACGAAGGTTCATTATATCGTCCTTTATCTGGGCTTGAGACTACCAATGTGTTGTGTGACTATCTTTTTTTCTTTTCTAAACCAATTGTTTTAACAGAACCTGAAGTCCCTTCCATCTTTTTTAGTTAGTGCTACTATTTTTTCGCTATTAAGATTTTATTCCCTAAGGATTCAAAACGAAAAATGTCGTCTTTTTTATGTTATGGATGGATGATTTCTTGTATTTGATTCTTCCTTATTGGGCGTCTACATTATCATGATATGGACTTCTTGTTATCAGTGTAAATGCTGCTTAACTAGTATTTCTTTTTCTACTGAATTACGGTTCTGGGTAGTCTCAACCTTCTGTTTTGAGATAATCAATTGACGTGTATGGACCAAGCGGACGGTGTTGTTTTAGAGTCATTCAGACATTGTGATTTAATCTTTCATAATGCAGATCAAACCACACTTTGTCTTTTGCTACTGTAAAAGCTGAAGAAGTATCAGGCTCTCAACCTGCTGAAGTTCACAACTTGGGTATGTACATTTACATAACGACTAGCTGCTGAAATTGGTCATTAATATGCAGTTTTCCAACGTTTGCCTAAGAATAGATGTGAGATATACTGTATAGACTTTAGATAATTTTGTAAGTTTGAATGATGTTAAACTCCCTGTATACCATATGCATGTTAGCAATTGATATTGAAGTAATACATCACTTCCGTACACCACTTTTCTTTCGATCAGATTCAAGTGTGTTTCTCCTATAAAAAAGGGAGAAGCTAGCTCTGGTCATTGCTCTAGTTTACTGCTACATCTAGTTGACTAGTGAATTTCATCCATTCAGTGCAGGGCAAGTGGACAAAATCTTCTAGTTGGAATACAATATTGGATCCCTTGAATGGGCAGCCGTTCATTAAAGTTGCAGAAGTAAATGAATCAGAACTGCAGGTATATATAATTTGGATGCATCATAATTCTTTGCACTGTATCTTTCAAGATGAGTCTTTCGACAGTAGAGTCTGTTTATTCTGTACAGTTAACTTGTTACTTTATGACCAACTCTAGTTCAGTCGCATAAAGACTTTTCCCTTCTAGTATGAATTCTTTAACACCAAAGATTGTCATGGTTCTATAAGTCCTATTGCTGGGTGTGCAGCCGTTTGTGGAGAGCTTGTCCAAGTGCCCGAAACATGGTCTACATAATCCATTCAAAGCACCAGAAAGGTATGCTTTTAATGTTTTTGGTCTTTTTCTTGTTTTTTTATGAAGTTGTCTAGATGAGCATTTACTGTCTTATGAATTTTTCTCCAAAGGAAGATATGAGGACTTAAGAAAATTTAATCCGAATGACACCGCTTCTCGCAGGTACTTAATGTTAGGAGACGTATCTACAAAAGCAGCTCATGCGCTTGGCTTGCCTGAGGTAATATATATTCAAGCAAGGATGCTGATGTTCTCGAAACCTTTTTGACTAACAGTTTATGATATGCATAATTAATTCTTATCATCTTAATGTTTTTCTTCTCTTTTTCTTTTTGGGTCTTACAGGTTTCTGATTTCTTTGCGAAGCTAATACAAAGGGTGTCTCCTAAGAGTTACCAACAAGCTCTTGTTGAAGTTCTCGTGACGCAGAAATTTCTGGAAAATTTCTGTGGTGATCAGGTAGATTCTAAAACTATTACCTTGTATGTTCAACGTTATACAGGGACTAGCTAAGAAAAAGATGTGTTTTAAATCGTGGCGCAACAATTCAGCAGCATAGCTTTCACATCCATGTGATTTTTTTGCTGCTTTATTTTATTTCAACAATTTTGTGTCTACTGATTGGTTGTTTCTTTTTTCCTTTTGCTGTTCTGTTAACTGTTAGTAGCTTTTTTGACACTGAAATATTTGAAAGCTTAATAGGTTTCAGTTTCAGGAACAAGGACTTATTTCACACGGGAATCATTTCTCCATTTTCTTTAACATGATACATGACTGTCCGATCCAATGCTGAACTCTTGATTTTATTTGGCAGGTTCGCTTTCTAGCTAGATCTTTTGCAGTACCAGGAAATCATCTGGGGCAGCAGAGCCATGGTTTCCGATGGCCTTATGGACCTGTAAGGCACCGTTCTTTCCGTTGTTGACTATATTTAATGGAACATGTTAACAAAAAAGTCCTATGATACAATCTTTCACGTTGAAACTGAGATCTGAAGGTTTAGTTATGTAACTAAAATCACTTAGCTTCGGGGGAAACAAATTCTTCACAATTTCAGAATGGTGTTAAGTTGTGTTATACATTGCTTTTGGCCATAGTGCTCAAAGTGGTAAATTAACAGAACATAATTTGTTTCTTACGTTTTCCTGTTGTGACTTCCTTATGCGATTGAATGATATTTTTTATTTCAATTATTAAAATTTCTCACACTACCCAATTTTTAACTTTATATTTCATAGGTAGCGGTTATTGCTCCCTTTAATTTTCCTTTGGAGATTCCTTTGCTTCAGCTGATGGGAGCGTTGTATATGGGAAATAAGCCAGTACTTAAAGTTGATAGCAAGGTAAGGTTGTGCAAATTTTTGTAGACTCTTTCACGTGCAAAATTACTTATCGGACAAGGTCCAGCTTAGAAACAAACTTGTCTATCATATATCAAAGAAGAAAAATTTGCTATTGATTTTTACAAACTCCTTACTTTTTTTGTCAAATTAACAAAATGTGCAGATAATTGGAAGATTTTGTTCCTAGTTTAGTTTATTTTTTCCTGTTAATAACTCTAAATATTTTTCCAGTGTGGTTTTTATAATTCGACCTGCATTGTTGGTTAGGTATGCATTGTTATGGAACAAATGCTTCGACTACTTCATGAGTGTGGGTTACCTGTGGATGATGTGGATTTCATAAACTCAGATGGAAAGACAATGAACAAGCTACTCGTGGAGGTTAATTTCTAAAACTAGACTCCTTTGGCCACTTATGAACAAGAATTGGCAACTGAAAATTACAAATTTTAGTCCAAAAACTTCCCATCCTATTAAAATTTTGTTGTCCTCATGTTATGTGCAAATAACCTTCACTTCAACCATGTTAAACTAATTCAGGAATCCCAAGAATAATTTAATCTATTTTCTTTGTTGAATTGTTGGCTTTTCGCACTAATATGGAGTAATTAACTTTCTAGAGTCTATAATAATTGTCGGATTCTTTCTAACCAACTTTTCCAACTACTAAAGATAATATTCCTATTTCCTGACATAGTTCTCTTTCGTATTGTGTCGTTAGGCAAAACCACGCATGACTCTCTTCACAGGTAGCTCAAGGGTGGCAGAGAAGTTAGCTGATGACCTAAGCGGTCGAGTCAAACTAGAAGATGCTGGATTCGACTGGAAGATCCTTGGGCCCGATGTCAATGAGGTTTACATAATCTGTTATCGACAGAGTTTGTTGCATTTTGGAAAGGCTTTTTTAAAGATTTTTTATTTACTTATTGTGATTGTTGGCTTTTGACAGGTGGATTACGTTGCATGGGTTTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCAGCTGAATCAATATTGTTCATGCATGAGGTGTGCTTAGTCCTTCTATTTTCTTCATGGAAGTTAAATGTTTTGAGATACAAAATCTATGTGGTTTATATAAGTTTTGGAAAAAGTAATGTAATATGGTTTCATTGAATTTCGTTCAAAGAACTCTCTTTTCTAACCATTTTTATTTTGGTGCAGAATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACGGTAAGAATACCTAATGCTAATGTTAATTTGGAGATTCTGTGTCCATCATTTGATACAATTTACTAGAAGTTTGAAAGTATCGATACGTTGAATTTGAATCTATTTTGGATAGTCTTTTTGATGTTCAGAATATTATTCACTCAAACAAGTGCAGAAATCTGGGACTTTGTGTGATATAAACAGAATATTTATAATAAAGGAGGAGCTCACCTTTTGTTAACATGATTTATCCGTTATTTTCTTTCTTGAATTACGCATTCTTTGTAGTACATTGTCAAGTAATGCCAACAATCTTGTCAGAAATACCTGGCGATAATTGTTATGTCTTGCTCCTGCAGGTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAGGTAATTGAATATTCTGAATTAAATGTCAAGTTGGGTAATTTTCTCGCTGATTCATCAAATCTTGCTGTTTTTTTCCCCTAGGTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAAGTAAGAAAATGTTCCCGTTTCTATTGAAATATCTGTTGCTCTATATACAACTTAAAATGTTTCACGTGCAACTAGCAGAAAATATCTCGAATTCTTTCTCTAGAAAGCATCCAGAATTTGTACATAAACTTATTTTTTGTACTTCATCGGATGAATCTAGAATAGAAAAGGCAATAACAGCACGAAAGATGCCAATGCCAAATCAGTTGTCGTTCCCTACCGAAGAAAATTTGTAGATCAAAACTGTTGAATTTTCTATTATGTCCCAAAAGTCAGTGTAGGAGGAGGGAAGGAAGGTGAGAAGAGAGGTGTAGTGTTCACTGTTAACTTACATGAAGCATTTGTAGTAATGCTGTTTGCTATTTTACCTTACTGTAGAATTGAAGAGCCACAGAGAAGGGAAAGAGACGAAATTTTGCTAGTCTCATATCTATAAAACCTCAGGAAGATACAAAAGTTTGGATAGTCCTAAATAGAATCAGGACACAGTACCAAAGAAAATCAAACTATATTGCTATACGTTATACTAGCCAGGGGTTCAGGGCTGAATCACCTCCATCAATTGTCTAATCTGCTGTTTAGATTAGTTTCTGTATATAACATTAAGGCACGTTGAACAAAAGAAGTTTAGATTCAGACTTGGGAACTTAAACCTTTATAATACATTTTGACTTATTGAATTGTTTGCATCATTTAGAACTTAGAATTTAGCATTGAGTGATAATGATAAAGTTGCTATGCTTTGTTGTTAAGATGGCTGGCATTTCTATCACGAAAAGAAAAAAACGAGAGAAATGAAAAGACTTGAGATTTGAAAAGCTTTATTAGCTATACCCCTATATGTACATGATTATGTAGTTATTTCAATTGTGAAATTCCCTTTTCAGAAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACAGGGGCTCCCCAGAATCACTGGTCAGCAACTTCTTATCATCTTCTATCTGTTATTGTAAATACACCTATTTAGCTTATTAACTCTCCTAAACAATGCCCATAATGTAGGTTTGGTCCTGCCGGGGACCCCAGAGGAGCCGGAATAGGTACTCCAGAAGCTATTAAACTTGTATGGTCTTGCCACAGAGAAATCATCTATGATGTTGGTCCCATGCCACTAGGATGGAAAGTTCCTGCATCTACTTGAGGAACCAACTGCTACCACTCAAAGCACTCGAGGATCGCGTTCAAAGAGCCTAACGTTAGAATTCCTTGGAGAGAATCCAGTTGTGGATAATGGAAGAATTAGTTTGGTTAACACAAAATCAAGTGGAATGCTATTTGAGTGCATATGTTTGTGCAGACATATGAGCAGCCAGCTTATACTACATATCTAATAAATAAGCTAGTTATTTCGG</genome_strand>
        <mrna_strand>GGTTTTGTTACAATAATGTAATGGTGTTTTGAAGGAATCACTTTTAATAGGTTAAAATTGTTCTTTAGAAGCGTTTACAATTTGATTATTGTAATCTTTGATAAATTTTGTGCATAGGGTAGGATGTATAAAGAACTTTACCTTATCTTTGTGGTGACAGAGATGTTGTTTTCGATAAAATCTAAGCTTTAGTTTTTTAAAAACTACCATTTTGGAAATTATTAGTTTAAATTCTGTTCATTCCAGTCCATCCGTTGGTAGTTTTTACGAAGGTTCATTATATCGTCCTTTATCTGGGCTTGAGACTACCAATGTGTTGTGTGACTATCTTTTTTTCTTTTCTAAACCAATTGTTTTAACAGAACCTGAAGTCCCTTCCATCTTTTTTAGTTAGTGCTACTATTTTTTCGCTATTAAGATTTTATTCCCTAAGGATTCAAAACGAAAAATGTCGTCTTTTTTATGTTATGGATGGATGATTTCTTGTATTTGATTCTTCCTTATTGGGCGTCTACATTATCATGATATGGACTTCTTGTTATCAGTGTAAATGCTGCTTAACTAGTATTTCTTTTTCTACTGAATTACGGTTCTGGGTAGTCTCAACCTTCTGTTTTGAGATAATCAATTGACGTGTATGGACCAAGCGGACGGTGTTGTTTTAGAGTCATTCAGACATTGTGATTTAATCTTTCATAATGCAGATCAAACCACACTTTGTCTTTTGCTACTGTAAAAGCTGAAGAAGTATCAGGCTCTCAACCTGCTGAAGTTCACAACTTGG.........................................................................................................................................................................................................................................................................................................................TGCAGGGCAAGTGGACAAAATCTTCTAGTTGGAATACAATATTGGATCCCTTGAATGGGCAGCCGTTCATTAAAGTTGCAGAAGTAAATGAATCAGAACTGCAG................................................................................................................................................................................................................CCGTTTGTGGAGAGCTTGTCCAAGTGCCCGAAACATGGTCTACATAATCCATTCAAAGCACCAGAAAG.............................................................................................................................................GTACTTAATGTTAGGAGACGTATCTACAAAAGCAGCTCATGCGCTTGGCTTGCCTGAG.............................................................................................................................GTTTCTGATTTCTTTGCGAAGCTAATACAAAGGGTGTCTCCTAAGAGTTACCAACAAGCTCTTGTTGAAGTTCTCGTGACGCAGAAATTTCTGGAAAATTTCTGTGGTGATCAG...................................................................................................................................................................................................................................................................................................................................................................GTTCGCTTTCTAGCTAGATCTTTTGCAGTACCAGGAAATCATCTGGGGCAGCAGAGCCATGGTTTCCGATGGCCTTATGGACCT....................................................................................................................................................................................................................................................................................................................................................GTAGCGGTTATTGCTCCCTTTAATTTTCCTTTGGAGATTCCTTTGCTTCAGCTGATGGGAGCGTTGTATATGGGAAATAAGCCAGTACTTAAAGTTGATAGCAAG...........................................................................................................................................................................................................................................................................GTATGCATTGTTATGGAACAAGTGCTTCGACTACTTCATGAGTGTGGGTTACCTGTGGATGATGTGGATTTCATAAACTCAGATGGAAAGACAATGAACAAGCTACTCGTGGAG....................................................................................................................................................................................................................................................................................................................................................GCAAAACCACGCATGACTCTCTTCACAGGTAGCTCAAGGGTGGCAGAGAAGTTAGCTGATGACCTAAGCGGTCGAGTCAAACTAGAAGATGCTGGATTCGACTGGAAGATCCTTGGGCCCGATGTCAATGAG................................................................................................GTGGATTACGTTGCATGGGTTTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCAGCTGAATCAATATTGTTCATGCATGAG............................................................................................................................................................AATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACG..................................................................................................................................................................................................................................................................................................................................................GTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAG.................................................................................GTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACAGGGGCTCCCCAGAATCACTG.......................................................................................GTTTGGTCCTGCCGGGGACCCCAGAGGAGCCGGAATAGGTACTCCAGAAGCTATTAAACTTGTATGGTCTTGCCACAGAGAAATCATCTATGATGTTGGTCCCATGCCACTAGGATGGAAAGTTCCTGCATCTACTTGAGGAACCAACTGCTACCACTCAAAGCACTCGAGGATCGCGTTCAAAGAGCCTAACGTTAGAATTCCTTGGAGAGAATCCAGTTGTGGATAATGGAAGAATTAGTTTGGTTAACACAAAATCAAGTGGAATGCTATTTGAGTGCATATGTTTGTGCAGACATATGAGCAGCCAGCTTATACTACATATCTAATAAATAAGCTAGTTATTTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370252" ref_strand="+" ref_description="SGN-E370252 [TUS-28-K20](-)">
      <seq>tacttcagatacctggatcgagattgctctttggtggtgaagccttacagaaccattcgatcccaaaaatttatggagccattaagcccactgctatttttgtacctcttgaagaaatactcaaagatgaacattatcctctcgtgaccaaagagatttttgggccattccaggttgtgactgagtacaaagataatcagcttccactggtcctcgatgcccttgaaaagatgcatgcacatttaacagctgctgtggtttccaatgatatattgttcctgcaaaaagtgattggaaattcagttaatggaaccacttatgctggattgagagcaagaacaacaggggctccccagaatcactggtttggtcctgccggggaccccagaggagccggaataggtactccagaagctattaaacttgtatggtcttgccacagagaaatcatctatgatgttggtcccatgccactaggatggaaagttcctgcatctacttgaggaaccaactgctaccactcaaagcactcgaggatcgcgttcaaagagcctaacgttagaattccttggagagaatccagttgtggataatggaagaattagtttggttaacacaaaatcaagtggaatgctatttgagtgcatatgtttgtgcagacatatgagcagccagcttatactacatatctaataaataagctagttatttcggaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98864" stop="96492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98564" g_stop="98392" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98391" i_stop="98311" i_length="81">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98310" g_stop="98200" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="284" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98199" i_stop="97313" i_length="887">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97312" g_stop="97233" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="364" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97232" i_stop="97146" i_length="87">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97145" g_stop="96796" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="714" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="715" polyA_stop="727"/>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E370252" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98564" e_stop="98392"/>
          <exon e_start="98310" e_stop="98200"/>
          <exon e_start="97312" e_stop="97233"/>
          <exon e_start="97145" e_stop="96796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAGGTAATTGAATATTCTGAATTAAATGTCAAGTTGGGTAATTTTCTCGCTGATTCATCAAATCTTGCTGTTTTTTTCCCCTAGGTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAAGTAAGAAAATGTTCCCGTTTCTATTGAAATATCTGTTGCTCTATATACAACTTAAAATGTTTCACGTGCAACTAGCAGAAAATATCTCGAATTCTTTCTCTAGAAAGCATCCAGAATTTGTACATAAACTTATTTTTTGTACTTCATCGGATGAATCTAGAATAGAAAAGGCAATAACAGCACGAAAGATGCCAATGCCAAATCAGTTGTCGTTCCCTACCGAAGAAAATTTGTAGATCAAAACTGTTGAATTTTCTATTATGTCCCAAAAGTCAGTGTAGGAGGAGGGAAGGAAGGTGAGAAGAGAGGTGTAGTGTTCACTGTTAACTTACATGAAGCATTTGTAGTAATGCTGTTTGCTATTTTACCTTACTGTAGAATTGAAGAGCCACAGAGAAGGGAAAGAGACGAAATTTTGCTAGTCTCATATCTATAAAACCTCAGGAAGATACAAAAGTTTGGATAGTCCTAAATAGAATCAGGACACAGTACCAAAGAAAATCAAACTATATTGCTATACGTTATACTAGCCAGGGGTTCAGGGCTGAATCACCTCCATCAATTGTCTAATCTGCTGTTTAGATTAGTTTCTGTATATAACATTAAGGCACGTTGAACAAAAGAAGTTTAGATTCAGACTTGGGAACTTAAACCTTTATAATACATTTTGACTTATTGAATTGTTTGCATCATTTAGAACTTAGAATTTAGCATTGAGTGATAATGATAAAGTTGCTATGCTTTGTTGTTAAGATGGCTGGCATTTCTATCACGAAAAGAAAAAAACGAGAGAAATGAAAAGACTTGAGATTTGAAAAGCTTTATTAGCTATACCCCTATATGTACATGATTATGTAGTTATTTCAATTGTGAAATTCCCTTTTCAGAAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACAGGGGCTCCCCAGAATCACTGGTCAGCAACTTCTTATCATCTTCTATCTGTTATTGTAAATACACCTATTTAGCTTATTAACTCTCCTAAACAATGCCCATAATGTAGGTTTGGTCCTGCCGGGGACCCCAGAGGAGCCGGAATAGGTACTCCAGAAGCTATTAAACTTGTATGGTCTTGCCACAGAGAAATCATCTATGATGTTGGTCCCATGCCACTAGGATGGAAAGTTCCTGCATCTACTTGAGGAACCAACTGCTACCACTCAAAGCACTCGAGGATCGCGTTCAAAGAGCCTAACGTTAGAATTCCTTGGAGAGAATCCAGTTGTGGATAATGGAAGAATTAGTTTGGTTAACACAAAATCAAGTGGAATGCTATTTGAGTGCATATGTTTGTGCAGACATATGAGCAGCCAGCTTATACTACATATCTAATAAATAAGCTAGTTATTTCGG</genome_strand>
        <mrna_strand>TACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAG.................................................................................GTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACAGGGGCTCCCCAGAATCACTG.......................................................................................GTTTGGTCCTGCCGGGGACCCCAGAGGAGCCGGAATAGGTACTCCAGAAGCTATTAAACTTGTATGGTCTTGCCACAGAGAAATCATCTATGATGTTGGTCCCATGCCACTAGGATGGAAAGTTCCTGCATCTACTTGAGGAACCAACTGCTACCACTCAAAGCACTCGAGGATCGCGTTCAAAGAGCCTAACGTTAGAATTCCTTGGAGAGAATCCAGTTGTGGATAATGGAAGAATTAGTTTGGTTAACACAAAATCAAGTGGAATGCTATTTGAGTGCATATGTTTGTGCAGACATATGAGCAGCCAGCTTATACTACATATCTAATAAATAAGCTAGTTATTTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232535" ref_strand="+" ref_description="SGN-E232535 [cLEL-5-K13](-)">
      <seq>agcactcaaggatcgcgttcaaagagcctaacgttagaattccttggagagaatccagttgtggataatggaaagattagtttggttaacacaaaatcaagtggaatgctatttgagtgcatatgtttgtgcggacatatgatcaagccagctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="97284" stop="96531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96984" g_stop="96831" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E232535" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>154</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96984" e_stop="96831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACTCGAGGATCGCGTTCAAAGAGCCTAACGTTAGAATTCCTTGGAGAGAATCCAGTTGTGGATAATGGAAGAATTAGTTTGGTTAACACAAAATCAAGTGGAATGCTATTTGAGTGCATATGTTTGTGCAGACATATGAGC-AGCCAGCTTA</genome_strand>
        <mrna_strand>AGCACTCAAGGATCGCGTTCAAAGAGCCTAACGTTAGAATTCCTTGGAGAGAATCCAGTTGTGGATAATGGAAAGATTAGTTTGGTTAACACAAAATCAAGTGGAATGCTATTTGAGTGCATATGTTTGTGCGGACATATGATCAAGCCAGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352369" ref_strand="+" ref_description="SGN-E352369 [cTOS-9-O24]">
      <seq>taaaagttctctcttagacaaaatgaccgagcttgctgcaagaagaaagttagatgatttaactattggtcctgtccttacggttacaactgaaacaatgctggaccatgcgaagaaattacttcagatacctggatcgagattgctctttggtggtgaagccttacagaaccattcgatcccaaaaatttatggagccattaagcccactgctatttttgtacctcttgaagaaatactcaaagatgaacattatcctctcgtgaccaaagagatttttgggccattccaggttgtgactgagtacaaagataatcagcttccactggtcctcgatgcccttgaaaagatgcatgcacatttaacagctgctgtggtttccaatgatatattgttcctgcaaaaagtgattggaaattcagttaatggaaccacttatgctggattgagagcaagaacaacaggggctccccagaatcactggtttggtcctgccggggaccccagaggagccggaataggtactccagaagctattaaacttgtatggtcttgccacagagaaatcatctatgatgttggtcccatgccactangatggnaaagtcctgcatctactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99321" stop="96709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99021" g_stop="98940" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98939" i_stop="98602" i_length="338">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98601" g_stop="98392" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="292" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98391" i_stop="98311" i_length="81">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98310" g_stop="98200" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="403" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98199" i_stop="97313" i_length="887">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97312" g_stop="97233" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="483" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97232" i_stop="97146" i_length="87">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97145" g_stop="97009" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="620" r_length="137" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E352369" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99021" e_stop="98940"/>
          <exon e_start="98601" e_stop="98392"/>
          <exon e_start="98310" e_stop="98200"/>
          <exon e_start="97312" e_stop="97233"/>
          <exon e_start="97145" e_stop="97009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACGGTAAGAATACCTAATGCTAATGTTAATTTGGAGATTCTGTGTCCATCATTTGATACAATTTACTAGAAGTTTGAAAGTATCGATACGTTGAATTTGAATCTATTTTGGATAGTCTTTTTGATGTTCAGAATATTATTCACTCAAACAAGTGCAGAAATCTGGGACTTTGTGTGATATAAACAGAATATTTATAATAAAGGAGGAGCTCACCTTTTGTTAACATGATTTATCCGTTATTTTCTTTCTTGAATTACGCATTCTTTGTAGTACATTGTCAAGTAATGCCAACAATCTTGTCAGAAATACCTGGCGATAATTGTTATGTCTTGCTCCTGCAGGTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAGGTAATTGAATATTCTGAATTAAATGTCAAGTTGGGTAATTTTCTCGCTGATTCATCAAATCTTGCTGTTTTTTTCCCCTAGGTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAAGTAAGAAAATGTTCCCGTTTCTATTGAAATATCTGTTGCTCTATATACAACTTAAAATGTTTCACGTGCAACTAGCAGAAAATATCTCGAATTCTTTCTCTAGAAAGCATCCAGAATTTGTACATAAACTTATTTTTTGTACTTCATCGGATGAATCTAGAATAGAAAAGGCAATAACAGCACGAAAGATGCCAATGCCAAATCAGTTGTCGTTCCCTACCGAAGAAAATTTGTAGATCAAAACTGTTGAATTTTCTATTATGTCCCAAAAGTCAGTGTAGGAGGAGGGAAGGAAGGTGAGAAGAGAGGTGTAGTGTTCACTGTTAACTTACATGAAGCATTTGTAGTAATGCTGTTTGCTATTTTACCTTACTGTAGAATTGAAGAGCCACAGAGAAGGGAAAGAGACGAAATTTTGCTAGTCTCATATCTATAAAACCTCAGGAAGATACAAAAGTTTGGATAGTCCTAAATAGAATCAGGACACAGTACCAAAGAAAATCAAACTATATTGCTATACGTTATACTAGCCAGGGGTTCAGGGCTGAATCACCTCCATCAATTGTCTAATCTGCTGTTTAGATTAGTTTCTGTATATAACATTAAGGCACGTTGAACAAAAGAAGTTTAGATTCAGACTTGGGAACTTAAACCTTTATAATACATTTTGACTTATTGAATTGTTTGCATCATTTAGAACTTAGAATTTAGCATTGAGTGATAATGATAAAGTTGCTATGCTTTGTTGTTAAGATGGCTGGCATTTCTATCACGAAAAGAAAAAAACGAGAGAAATGAAAAGACTTGAGATTTGAAAAGCTTTATTAGCTATACCCCTATATGTACATGATTATGTAGTTATTTCAATTGTGAAATTCCCTTTTCAGAAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACAGGGGCTCCCCAGAATCACTGGTCAGCAACTTCTTATCATCTTCTATCTGTTATTGTAAATACACCTATTTAGCTTATTAACTCTCCTAAACAATGCCCATAATGTAGGTTTGGTCCTGCCGGGGACCCCAGAGGAGCCGGAATAGGTACTCCAGAAGCTATTAAACTTGTATGGTCTTGCCACAGAGAAATCATCTATGATGTTGGTCCCATGCCACTAGGATGGAAAGTTCCTGCATCTACTT</genome_strand>
        <mrna_strand>TAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACG..................................................................................................................................................................................................................................................................................................................................................GTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAG.................................................................................GTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACAGGGGCTCCCCAGAATCACTG.......................................................................................GTTTGGTCCTGCCGGGGACCCCAGAGGAGCCGGAATAGGTACTCCAGAAGCTATTAAACTTGTATGGTCTTGCCACAGAGAAATCATCTATGATGTTGGTCCCATGCCACTANGATGGNAAAGTCCTGCATCTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248468" ref_strand="+" ref_description="SGN-E248468 [cLEF-59-D12]">
      <seq>aaagttctctcttagacaaaatgaccgagcttgctgcaagaagaaagttagatgatttaactattggtcctgtccttacggttacaactgaaacaatgctggaccatgcgaagaaattacttcagatacctggatcgagattgctctttggtggtgaagccttacagaaccattcgatcccaaaaatttatggagccattaagcccactgctatttttgtacctcttgaagaaatactcaaagatgaacattatcctctcgtgaccaaagagatttttgggccattccaggttgtgactgagtacaaagataatcagcttccactggtcctcgatgcccttgaaaagatgcatgcacatttaacagctgctgtggtttccaatgatatattgttcctgcaaaaagtgattggaaattcagttaatggaaccacttatgctggattgagagcaagaacaacaggggctccccagaatcactggtttggtcctgccggggaccccanaggagccggaataggtactccagaagctattaaacttgtatggtcttgccacagagaaatcatctatgatgttggtcccatgccactaggatggaaagttcctgcatctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99319" stop="96710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99019" g_stop="98940" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98939" i_stop="98602" i_length="338">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98601" g_stop="98392" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="290" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98391" i_stop="98311" i_length="81">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98310" g_stop="98200" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="401" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98199" i_stop="97313" i_length="887">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97312" g_stop="97233" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="481" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97232" i_stop="97146" i_length="87">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97145" g_stop="97010" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="617" r_length="136" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E248468" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99019" e_stop="98940"/>
          <exon e_start="98601" e_stop="98392"/>
          <exon e_start="98310" e_stop="98200"/>
          <exon e_start="97312" e_stop="97233"/>
          <exon e_start="97145" e_stop="97010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACGGTAAGAATACCTAATGCTAATGTTAATTTGGAGATTCTGTGTCCATCATTTGATACAATTTACTAGAAGTTTGAAAGTATCGATACGTTGAATTTGAATCTATTTTGGATAGTCTTTTTGATGTTCAGAATATTATTCACTCAAACAAGTGCAGAAATCTGGGACTTTGTGTGATATAAACAGAATATTTATAATAAAGGAGGAGCTCACCTTTTGTTAACATGATTTATCCGTTATTTTCTTTCTTGAATTACGCATTCTTTGTAGTACATTGTCAAGTAATGCCAACAATCTTGTCAGAAATACCTGGCGATAATTGTTATGTCTTGCTCCTGCAGGTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAGGTAATTGAATATTCTGAATTAAATGTCAAGTTGGGTAATTTTCTCGCTGATTCATCAAATCTTGCTGTTTTTTTCCCCTAGGTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAAGTAAGAAAATGTTCCCGTTTCTATTGAAATATCTGTTGCTCTATATACAACTTAAAATGTTTCACGTGCAACTAGCAGAAAATATCTCGAATTCTTTCTCTAGAAAGCATCCAGAATTTGTACATAAACTTATTTTTTGTACTTCATCGGATGAATCTAGAATAGAAAAGGCAATAACAGCACGAAAGATGCCAATGCCAAATCAGTTGTCGTTCCCTACCGAAGAAAATTTGTAGATCAAAACTGTTGAATTTTCTATTATGTCCCAAAAGTCAGTGTAGGAGGAGGGAAGGAAGGTGAGAAGAGAGGTGTAGTGTTCACTGTTAACTTACATGAAGCATTTGTAGTAATGCTGTTTGCTATTTTACCTTACTGTAGAATTGAAGAGCCACAGAGAAGGGAAAGAGACGAAATTTTGCTAGTCTCATATCTATAAAACCTCAGGAAGATACAAAAGTTTGGATAGTCCTAAATAGAATCAGGACACAGTACCAAAGAAAATCAAACTATATTGCTATACGTTATACTAGCCAGGGGTTCAGGGCTGAATCACCTCCATCAATTGTCTAATCTGCTGTTTAGATTAGTTTCTGTATATAACATTAAGGCACGTTGAACAAAAGAAGTTTAGATTCAGACTTGGGAACTTAAACCTTTATAATACATTTTGACTTATTGAATTGTTTGCATCATTTAGAACTTAGAATTTAGCATTGAGTGATAATGATAAAGTTGCTATGCTTTGTTGTTAAGATGGCTGGCATTTCTATCACGAAAAGAAAAAAACGAGAGAAATGAAAAGACTTGAGATTTGAAAAGCTTTATTAGCTATACCCCTATATGTACATGATTATGTAGTTATTTCAATTGTGAAATTCCCTTTTCAGAAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACAGGGGCTCCCCAGAATCACTGGTCAGCAACTTCTTATCATCTTCTATCTGTTATTGTAAATACACCTATTTAGCTTATTAACTCTCCTAAACAATGCCCATAATGTAGGTTTGGTCCTGCCGGGGACCCCAGAGGAGCCGGAATAGGTACTCCAGAAGCTATTAAACTTGTATGGTCTTGCCACAGAGAAATCATCTATGATGTTGGTCCCATGCCACTAGGATGGAAAGTTCCTGCATCTACT</genome_strand>
        <mrna_strand>AAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACG..................................................................................................................................................................................................................................................................................................................................................GTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAG.................................................................................GTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACAGGGGCTCCCCAGAATCACTG.......................................................................................GTTTGGTCCTGCCGGGGACCCCANAGGAGCCGGAATAGGTACTCCAGAAGCTATTAAACTTGTATGGTCTTGCCACAGAGAAATCATCTATGATGTTGGTCCCATGCCACTAGGATGGAAAGTTCCTGCATCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271307" ref_strand="+" ref_description="SGN-E271307 [cLEM-5-B12]">
      <seq>aaattacttcagatacctggatcgagattgctctttggtggtgaagccttacagaaccattcgatcccaaaaatttatggagccattaagcccactgctatttttgtacctcttgaagaaatactcaaagatgaacattatcctctcgtgaccaaagagatttttgggccattccaggttgtgactgagtacaaagataatcagcttccactggtcctcgatgcccttgaaaagatgcatgcacatttaacagctgctgtggtttccaatgatatattgttcctgcaaaaagtgattggaaattcagttaatggaaccacttatgctggattgagagcaagaacaacaggggctccccagaatcactggtttggtcctgccggggaccccagaggagccggaataggtactccagaagctattaaacttgtatggtcttgccacagagaaatcatctatgatgttggtcccatgccactaggatggaaagttcctgcatctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98868" stop="96710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98568" g_stop="98392" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98391" i_stop="98311" i_length="81">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98310" g_stop="98200" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="288" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98199" i_stop="97313" i_length="887">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97312" g_stop="97233" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="368" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97232" i_stop="97146" i_length="87">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97145" g_stop="97010" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="504" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E271307" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98568" e_stop="98392"/>
          <exon e_start="98310" e_stop="98200"/>
          <exon e_start="97312" e_stop="97233"/>
          <exon e_start="97145" e_stop="97010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAGGTAATTGAATATTCTGAATTAAATGTCAAGTTGGGTAATTTTCTCGCTGATTCATCAAATCTTGCTGTTTTTTTCCCCTAGGTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAAGTAAGAAAATGTTCCCGTTTCTATTGAAATATCTGTTGCTCTATATACAACTTAAAATGTTTCACGTGCAACTAGCAGAAAATATCTCGAATTCTTTCTCTAGAAAGCATCCAGAATTTGTACATAAACTTATTTTTTGTACTTCATCGGATGAATCTAGAATAGAAAAGGCAATAACAGCACGAAAGATGCCAATGCCAAATCAGTTGTCGTTCCCTACCGAAGAAAATTTGTAGATCAAAACTGTTGAATTTTCTATTATGTCCCAAAAGTCAGTGTAGGAGGAGGGAAGGAAGGTGAGAAGAGAGGTGTAGTGTTCACTGTTAACTTACATGAAGCATTTGTAGTAATGCTGTTTGCTATTTTACCTTACTGTAGAATTGAAGAGCCACAGAGAAGGGAAAGAGACGAAATTTTGCTAGTCTCATATCTATAAAACCTCAGGAAGATACAAAAGTTTGGATAGTCCTAAATAGAATCAGGACACAGTACCAAAGAAAATCAAACTATATTGCTATACGTTATACTAGCCAGGGGTTCAGGGCTGAATCACCTCCATCAATTGTCTAATCTGCTGTTTAGATTAGTTTCTGTATATAACATTAAGGCACGTTGAACAAAAGAAGTTTAGATTCAGACTTGGGAACTTAAACCTTTATAATACATTTTGACTTATTGAATTGTTTGCATCATTTAGAACTTAGAATTTAGCATTGAGTGATAATGATAAAGTTGCTATGCTTTGTTGTTAAGATGGCTGGCATTTCTATCACGAAAAGAAAAAAACGAGAGAAATGAAAAGACTTGAGATTTGAAAAGCTTTATTAGCTATACCCCTATATGTACATGATTATGTAGTTATTTCAATTGTGAAATTCCCTTTTCAGAAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACAGGGGCTCCCCAGAATCACTGGTCAGCAACTTCTTATCATCTTCTATCTGTTATTGTAAATACACCTATTTAGCTTATTAACTCTCCTAAACAATGCCCATAATGTAGGTTTGGTCCTGCCGGGGACCCCAGAGGAGCCGGAATAGGTACTCCAGAAGCTATTAAACTTGTATGGTCTTGCCACAGAGAAATCATCTATGATGTTGGTCCCATGCCACTAGGATGGAAAGTTCCTGCATCTACT</genome_strand>
        <mrna_strand>AAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAG.................................................................................GTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACAGGGGCTCCCCAGAATCACTG.......................................................................................GTTTGGTCCTGCCGGGGACCCCAGAGGAGCCGGAATAGGTACTCCAGAAGCTATTAAACTTGTATGGTCTTGCCACAGAGAAATCATCTATGATGTTGGTCCCATGCCACTAGGATGGAAAGTTCCTGCATCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276880" ref_strand="+" ref_description="SGN-E276880 [cLEN-14-P5]">
      <seq>aatgaccgagcttgctgcaagaagaaagttagatgatttaactattggtcctgtccttacggttacaactgaaacaatgctggaccatgcgaagaaattacttcagatacctggatcgagattgctctttggtggtgaagccttacagaaccattcgatcccaaaaatttatggagccattaagcccactgctatttttgtacctcttgaagaaatactcaaagatgaacattatcctctcgtgaccaaagagatttttgggccattccaggttgtgactgagtacaaagataatcagcttccactggtcctcgatgcccttgaaaagatgcatgcacatttaacagctgctgtggtttccaatgatatattgttcctgcaaaaagtgattggaaattcagttaatggaaccacttatgctggattgagagcaagaacaacaggggctccccagaatcactggtttggtcctgccggggaccccagaggagccggaataggtactccagaagctattaaacttgtatggtcttgccacagagaaatcatctatgatgttggtcccatgccactaggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99300" stop="96729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99000" g_stop="98940" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98939" i_stop="98602" i_length="338">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98601" g_stop="98392" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="271" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98391" i_stop="98311" i_length="81">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98310" g_stop="98200" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="382" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98199" i_stop="97313" i_length="887">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97312" g_stop="97233" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="462" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97232" i_stop="97146" i_length="87">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97145" g_stop="97029" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="579" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E276880" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99000" e_stop="98940"/>
          <exon e_start="98601" e_stop="98392"/>
          <exon e_start="98310" e_stop="98200"/>
          <exon e_start="97312" e_stop="97233"/>
          <exon e_start="97145" e_stop="97029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACGGTAAGAATACCTAATGCTAATGTTAATTTGGAGATTCTGTGTCCATCATTTGATACAATTTACTAGAAGTTTGAAAGTATCGATACGTTGAATTTGAATCTATTTTGGATAGTCTTTTTGATGTTCAGAATATTATTCACTCAAACAAGTGCAGAAATCTGGGACTTTGTGTGATATAAACAGAATATTTATAATAAAGGAGGAGCTCACCTTTTGTTAACATGATTTATCCGTTATTTTCTTTCTTGAATTACGCATTCTTTGTAGTACATTGTCAAGTAATGCCAACAATCTTGTCAGAAATACCTGGCGATAATTGTTATGTCTTGCTCCTGCAGGTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAGGTAATTGAATATTCTGAATTAAATGTCAAGTTGGGTAATTTTCTCGCTGATTCATCAAATCTTGCTGTTTTTTTCCCCTAGGTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAAGTAAGAAAATGTTCCCGTTTCTATTGAAATATCTGTTGCTCTATATACAACTTAAAATGTTTCACGTGCAACTAGCAGAAAATATCTCGAATTCTTTCTCTAGAAAGCATCCAGAATTTGTACATAAACTTATTTTTTGTACTTCATCGGATGAATCTAGAATAGAAAAGGCAATAACAGCACGAAAGATGCCAATGCCAAATCAGTTGTCGTTCCCTACCGAAGAAAATTTGTAGATCAAAACTGTTGAATTTTCTATTATGTCCCAAAAGTCAGTGTAGGAGGAGGGAAGGAAGGTGAGAAGAGAGGTGTAGTGTTCACTGTTAACTTACATGAAGCATTTGTAGTAATGCTGTTTGCTATTTTACCTTACTGTAGAATTGAAGAGCCACAGAGAAGGGAAAGAGACGAAATTTTGCTAGTCTCATATCTATAAAACCTCAGGAAGATACAAAAGTTTGGATAGTCCTAAATAGAATCAGGACACAGTACCAAAGAAAATCAAACTATATTGCTATACGTTATACTAGCCAGGGGTTCAGGGCTGAATCACCTCCATCAATTGTCTAATCTGCTGTTTAGATTAGTTTCTGTATATAACATTAAGGCACGTTGAACAAAAGAAGTTTAGATTCAGACTTGGGAACTTAAACCTTTATAATACATTTTGACTTATTGAATTGTTTGCATCATTTAGAACTTAGAATTTAGCATTGAGTGATAATGATAAAGTTGCTATGCTTTGTTGTTAAGATGGCTGGCATTTCTATCACGAAAAGAAAAAAACGAGAGAAATGAAAAGACTTGAGATTTGAAAAGCTTTATTAGCTATACCCCTATATGTACATGATTATGTAGTTATTTCAATTGTGAAATTCCCTTTTCAGAAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACAGGGGCTCCCCAGAATCACTGGTCAGCAACTTCTTATCATCTTCTATCTGTTATTGTAAATACACCTATTTAGCTTATTAACTCTCCTAAACAATGCCCATAATGTAGGTTTGGTCCTGCCGGGGACCCCAGAGGAGCCGGAATAGGTACTCCAGAAGCTATTAAACTTGTATGGTCTTGCCACAGAGAAATCATCTATGATGTTGGTCCCATGCCACTAGGATG</genome_strand>
        <mrna_strand>AATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACG..................................................................................................................................................................................................................................................................................................................................................GTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAG.................................................................................GTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACAGGGGCTCCCCAGAATCACTG.......................................................................................GTTTGGTCCTGCCGGGGACCCCAGAGGAGCCGGAATAGGTACTCCAGAAGCTATTAAACTTGTATGGTCTTGCCACAGAGAAATCATCTATGATGTTGGTCCCATGCCACTAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391700" ref_strand="+" ref_description="SGN-E391700 [TUS-27-J6]">
      <seq>gaaattacttcagatacctggatcgagattgctctttggtggtgaagccttacagaaccattcgatcccaaaaatttatggagccattaagcccactgctatttttgtacctcttgaagaaatactcaaagatgaacattatcctctcgtgaccaaagagatttttgggccattccaggttgtgactgagtacaaagataatcagcttccactggtcctcgatgcccttgaaaagatgcatgcacatttaacagctgctgtggtttccaatgatatattgttcctgcaaaaagtgattggaaattcagttaatggaaccacttatgctggattgagagcaagaacaacaggggctccccagaatcactggtttggtcctgccggggaccccataggagccggaataggtactccagaagctattaaacttgtatggtcttgccacagaataaatcatctatgatgttggtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98869" stop="96744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98569" g_stop="98392" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98391" i_stop="98311" i_length="81">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98310" g_stop="98200" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="289" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98199" i_stop="97313" i_length="887">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97312" g_stop="97233" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="369" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97232" i_stop="97146" i_length="87">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97145" g_stop="97044" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="472" r_length="103" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E391700" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98569" e_stop="98392"/>
          <exon e_start="98310" e_stop="98200"/>
          <exon e_start="97312" e_stop="97233"/>
          <exon e_start="97145" e_stop="97044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAGGTAATTGAATATTCTGAATTAAATGTCAAGTTGGGTAATTTTCTCGCTGATTCATCAAATCTTGCTGTTTTTTTCCCCTAGGTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAAGTAAGAAAATGTTCCCGTTTCTATTGAAATATCTGTTGCTCTATATACAACTTAAAATGTTTCACGTGCAACTAGCAGAAAATATCTCGAATTCTTTCTCTAGAAAGCATCCAGAATTTGTACATAAACTTATTTTTTGTACTTCATCGGATGAATCTAGAATAGAAAAGGCAATAACAGCACGAAAGATGCCAATGCCAAATCAGTTGTCGTTCCCTACCGAAGAAAATTTGTAGATCAAAACTGTTGAATTTTCTATTATGTCCCAAAAGTCAGTGTAGGAGGAGGGAAGGAAGGTGAGAAGAGAGGTGTAGTGTTCACTGTTAACTTACATGAAGCATTTGTAGTAATGCTGTTTGCTATTTTACCTTACTGTAGAATTGAAGAGCCACAGAGAAGGGAAAGAGACGAAATTTTGCTAGTCTCATATCTATAAAACCTCAGGAAGATACAAAAGTTTGGATAGTCCTAAATAGAATCAGGACACAGTACCAAAGAAAATCAAACTATATTGCTATACGTTATACTAGCCAGGGGTTCAGGGCTGAATCACCTCCATCAATTGTCTAATCTGCTGTTTAGATTAGTTTCTGTATATAACATTAAGGCACGTTGAACAAAAGAAGTTTAGATTCAGACTTGGGAACTTAAACCTTTATAATACATTTTGACTTATTGAATTGTTTGCATCATTTAGAACTTAGAATTTAGCATTGAGTGATAATGATAAAGTTGCTATGCTTTGTTGTTAAGATGGCTGGCATTTCTATCACGAAAAGAAAAAAACGAGAGAAATGAAAAGACTTGAGATTTGAAAAGCTTTATTAGCTATACCCCTATATGTACATGATTATGTAGTTATTTCAATTGTGAAATTCCCTTTTCAGAAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACAGGGGCTCCCCAGAATCACTGGTCAGCAACTTCTTATCATCTTCTATCTGTTATTGTAAATACACCTATTTAGCTTATTAACTCTCCTAAACAATGCCCATAATGTAGGTTTGGTCCTGCCGGGGACCCCAGAGGAGCCGGAATAGGTACTCCAGAAGCTATTAAACTTGTATGGTCTTGCCACAG-AGAAATCATCTATGATGTTGGTCC</genome_strand>
        <mrna_strand>GAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAG.................................................................................GTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACAGGGGCTCCCCAGAATCACTG.......................................................................................GTTTGGTCCTGCCGGGGACCCCATAGGAGCCGGAATAGGTACTCCAGAAGCTATTAAACTTGTATGGTCTTGCCACAGAATAAATCATCTATGATGTTGGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259305" ref_strand="+" ref_description="SGN-E259305 [cLEG-43-E21]">
      <seq>tcatgcatgagaattggagtaaaagttctctcttagacaaaatgaccgagcttgctgcaagaagaaagttagatgatttaactattggtcctgtccttacggttacaactgaaacaatgctggaccatgcgaagaaattacttcagatacctggatcgagattgctctttggtggtgaagccttacagaaccattcgatcccaaaaatttatggagccattaagcccactgctatttttgtacctcttgaagaaatactcaaagatgaacattatcctctcgtgaccaaagagatttttgggccattccaggttgtgactgagtacaaagataatcagcttccactggtcctcgatgcccttgaaaagatgcatgcacatttaacagctgctgtggtttccaatgatatattgttcctgcaaaaagtgattggaaattcagttaatggaaccacttatgctggattgagagcaagaacaacaggggctccccagaatcactggtttggtcctgccggggaccccagaggagccggaataggtactccagaagctattaaacttgtatggtcttgccacagagaaatcatctatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99334" stop="96752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99196" g_stop="99186" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99185" i_stop="99030" i_length="156">
            <donor d_prob="0.824" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99029" g_stop="98940" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="101" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98939" i_stop="98602" i_length="338">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98601" g_stop="98392" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="311" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98391" i_stop="98311" i_length="81">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98310" g_stop="98200" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="422" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98199" i_stop="97313" i_length="887">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97312" g_stop="97233" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="502" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97232" i_stop="97146" i_length="87">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97145" g_stop="97052" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="596" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E259305" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99196" e_stop="99186"/>
          <exon e_start="99029" e_stop="98940"/>
          <exon e_start="98601" e_stop="98392"/>
          <exon e_start="98310" e_stop="98200"/>
          <exon e_start="97312" e_stop="97233"/>
          <exon e_start="97145" e_stop="97052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGCATGAGGTGTGCTTAGTCCTTCTATTTTCTTCATGGAAGTTAAATGTTTTGAGATACAAAATCTATGTGGTTTATATAAGTTTTGGAAAAAGTAATGTAATATGGTTTCATTGAATTTCGTTCAAAGAACTCTCTTTTCTAACCATTTTTATTTTGGTGCAGAATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACGGTAAGAATACCTAATGCTAATGTTAATTTGGAGATTCTGTGTCCATCATTTGATACAATTTACTAGAAGTTTGAAAGTATCGATACGTTGAATTTGAATCTATTTTGGATAGTCTTTTTGATGTTCAGAATATTATTCACTCAAACAAGTGCAGAAATCTGGGACTTTGTGTGATATAAACAGAATATTTATAATAAAGGAGGAGCTCACCTTTTGTTAACATGATTTATCCGTTATTTTCTTTCTTGAATTACGCATTCTTTGTAGTACATTGTCAAGTAATGCCAACAATCTTGTCAGAAATACCTGGCGATAATTGTTATGTCTTGCTCCTGCAGGTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAGGTAATTGAATATTCTGAATTAAATGTCAAGTTGGGTAATTTTCTCGCTGATTCATCAAATCTTGCTGTTTTTTTCCCCTAGGTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAAGTAAGAAAATGTTCCCGTTTCTATTGAAATATCTGTTGCTCTATATACAACTTAAAATGTTTCACGTGCAACTAGCAGAAAATATCTCGAATTCTTTCTCTAGAAAGCATCCAGAATTTGTACATAAACTTATTTTTTGTACTTCATCGGATGAATCTAGAATAGAAAAGGCAATAACAGCACGAAAGATGCCAATGCCAAATCAGTTGTCGTTCCCTACCGAAGAAAATTTGTAGATCAAAACTGTTGAATTTTCTATTATGTCCCAAAAGTCAGTGTAGGAGGAGGGAAGGAAGGTGAGAAGAGAGGTGTAGTGTTCACTGTTAACTTACATGAAGCATTTGTAGTAATGCTGTTTGCTATTTTACCTTACTGTAGAATTGAAGAGCCACAGAGAAGGGAAAGAGACGAAATTTTGCTAGTCTCATATCTATAAAACCTCAGGAAGATACAAAAGTTTGGATAGTCCTAAATAGAATCAGGACACAGTACCAAAGAAAATCAAACTATATTGCTATACGTTATACTAGCCAGGGGTTCAGGGCTGAATCACCTCCATCAATTGTCTAATCTGCTGTTTAGATTAGTTTCTGTATATAACATTAAGGCACGTTGAACAAAAGAAGTTTAGATTCAGACTTGGGAACTTAAACCTTTATAATACATTTTGACTTATTGAATTGTTTGCATCATTTAGAACTTAGAATTTAGCATTGAGTGATAATGATAAAGTTGCTATGCTTTGTTGTTAAGATGGCTGGCATTTCTATCACGAAAAGAAAAAAACGAGAGAAATGAAAAGACTTGAGATTTGAAAAGCTTTATTAGCTATACCCCTATATGTACATGATTATGTAGTTATTTCAATTGTGAAATTCCCTTTTCAGAAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACAGGGGCTCCCCAGAATCACTGGTCAGCAACTTCTTATCATCTTCTATCTGTTATTGTAAATACACCTATTTAGCTTATTAACTCTCCTAAACAATGCCCATAATGTAGGTTTGGTCCTGCCGGGGACCCCAGAGGAGCCGGAATAGGTACTCCAGAAGCTATTAAACTTGTATGGTCTTGCCACAGAGAAATCATCTATGAT</genome_strand>
        <mrna_strand>TCATGCATGAG............................................................................................................................................................AATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACG..................................................................................................................................................................................................................................................................................................................................................GTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAG.................................................................................GTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACAGGGGCTCCCCAGAATCACTG.......................................................................................GTTTGGTCCTGCCGGGGACCCCAGAGGAGCCGGAATAGGTACTCCAGAAGCTATTAAACTTGTATGGTCTTGCCACAGAGAAATCATCTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274738" ref_strand="+" ref_description="SGN-E274738 [cLEN-13-P5]">
      <seq>aatgaccgagcttgctgcaagaagaaagttagatgatttaactattggtcctgtccttacggttacaactgaaacaatgctggaccatgcgaagaaattacttcagatacctggatcgagattgctctttggtggtgaagccttacagaaccattcgatcccaaaaatttatggagccattaagcccactgctatttttgtacctcttgaagaaatactcaaagatgaacattatcctctcgtgaccaaagagatttttgggccattccaggttgtgactgagtacaaagataatcagcttccactggtcctcgatgcccttgaaaagatgcatgcacatttaacagctgctgtggtttccaatgatatattgttcctgcaaaaagtgattggaaattcagttaatggaaccacttatgctggattgagagcaagaacaacaggggctccccagaatcactggtttggtcctgccggggaccccagaggagccggaataggtactccagaagctattaaacttgtatggtcttgccacagagaaatcatctatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99300" stop="96752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99000" g_stop="98940" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98939" i_stop="98602" i_length="338">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98601" g_stop="98392" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="271" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98391" i_stop="98311" i_length="81">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98310" g_stop="98200" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="382" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98199" i_stop="97313" i_length="887">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97312" g_stop="97233" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="462" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97232" i_stop="97146" i_length="87">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97145" g_stop="97052" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="556" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E274738" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99000" e_stop="98940"/>
          <exon e_start="98601" e_stop="98392"/>
          <exon e_start="98310" e_stop="98200"/>
          <exon e_start="97312" e_stop="97233"/>
          <exon e_start="97145" e_stop="97052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACGGTAAGAATACCTAATGCTAATGTTAATTTGGAGATTCTGTGTCCATCATTTGATACAATTTACTAGAAGTTTGAAAGTATCGATACGTTGAATTTGAATCTATTTTGGATAGTCTTTTTGATGTTCAGAATATTATTCACTCAAACAAGTGCAGAAATCTGGGACTTTGTGTGATATAAACAGAATATTTATAATAAAGGAGGAGCTCACCTTTTGTTAACATGATTTATCCGTTATTTTCTTTCTTGAATTACGCATTCTTTGTAGTACATTGTCAAGTAATGCCAACAATCTTGTCAGAAATACCTGGCGATAATTGTTATGTCTTGCTCCTGCAGGTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAGGTAATTGAATATTCTGAATTAAATGTCAAGTTGGGTAATTTTCTCGCTGATTCATCAAATCTTGCTGTTTTTTTCCCCTAGGTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAAGTAAGAAAATGTTCCCGTTTCTATTGAAATATCTGTTGCTCTATATACAACTTAAAATGTTTCACGTGCAACTAGCAGAAAATATCTCGAATTCTTTCTCTAGAAAGCATCCAGAATTTGTACATAAACTTATTTTTTGTACTTCATCGGATGAATCTAGAATAGAAAAGGCAATAACAGCACGAAAGATGCCAATGCCAAATCAGTTGTCGTTCCCTACCGAAGAAAATTTGTAGATCAAAACTGTTGAATTTTCTATTATGTCCCAAAAGTCAGTGTAGGAGGAGGGAAGGAAGGTGAGAAGAGAGGTGTAGTGTTCACTGTTAACTTACATGAAGCATTTGTAGTAATGCTGTTTGCTATTTTACCTTACTGTAGAATTGAAGAGCCACAGAGAAGGGAAAGAGACGAAATTTTGCTAGTCTCATATCTATAAAACCTCAGGAAGATACAAAAGTTTGGATAGTCCTAAATAGAATCAGGACACAGTACCAAAGAAAATCAAACTATATTGCTATACGTTATACTAGCCAGGGGTTCAGGGCTGAATCACCTCCATCAATTGTCTAATCTGCTGTTTAGATTAGTTTCTGTATATAACATTAAGGCACGTTGAACAAAAGAAGTTTAGATTCAGACTTGGGAACTTAAACCTTTATAATACATTTTGACTTATTGAATTGTTTGCATCATTTAGAACTTAGAATTTAGCATTGAGTGATAATGATAAAGTTGCTATGCTTTGTTGTTAAGATGGCTGGCATTTCTATCACGAAAAGAAAAAAACGAGAGAAATGAAAAGACTTGAGATTTGAAAAGCTTTATTAGCTATACCCCTATATGTACATGATTATGTAGTTATTTCAATTGTGAAATTCCCTTTTCAGAAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACAGGGGCTCCCCAGAATCACTGGTCAGCAACTTCTTATCATCTTCTATCTGTTATTGTAAATACACCTATTTAGCTTATTAACTCTCCTAAACAATGCCCATAATGTAGGTTTGGTCCTGCCGGGGACCCCAGAGGAGCCGGAATAGGTACTCCAGAAGCTATTAAACTTGTATGGTCTTGCCACAGAGAAATCATCTATGAT</genome_strand>
        <mrna_strand>AATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACG..................................................................................................................................................................................................................................................................................................................................................GTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAG.................................................................................GTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACAGGGGCTCCCCAGAATCACTG.......................................................................................GTTTGGTCCTGCCGGGGACCCCAGAGGAGCCGGAATAGGTACTCCAGAAGCTATTAAACTTGTATGGTCTTGCCACAGAGAAATCATCTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726482" ref_strand="+" ref_description="SGN-E726482 [LA11DG06]">
      <seq>gttgatagcaaggtatgcattgttatggaacaaatgcttcgactacttcatgagtgtgggttacctgtggatgatgtggatttcataaactcagatggaaagacaatgaacaagctactcgtggaggcaaaaccacgcatgactctcttcacaggtagctcaagggtggcagagaagttagctgatgacctaagcggtcgagtcaaactagaagatgctggattcgactggaagatccttgggcccgatgtcaatgaggtggattacgttgcatgggtttgtgaccaagatgcatatgcatgtagtggtcagaagtgttcagctgaatcaatattgttcatgcatgagaattggagtaaaagttctctcttagacaaaatgaccgagcttgctgcaagaagaaagttagatgatttaactattggtcctgtccttacggttacaactgaaacaatgctggaccatgcgaagaaattacttcagatacctggatcgagattgctctttggtggtgaagccttacagaaccattcgatcccaaaaatttatggagccattaagcccactgctatttttgtacctcttgaagaaatactcaaagatgaacattatcctctcgtgaccaaagagatttttgggccattccaggttgtgactgagtacaaagataatcagcttccactggtcctcgatgcccttgaaaagatgcatgcacatttaacagctgctgtggtttccaatgatatattgttcctgcaaaaagtgattgggaaattcagttaatggaaccacttatgctggattgagagcaagaaacacaggggctccccagaatcactggtttggtcctgccggggacccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100268" stop="96824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100236" g_stop="100225" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100224" i_stop="99958" i_length="267">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.633" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99957" g_stop="99844" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="126" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99843" i_stop="99504" i_length="340">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99503" g_stop="99372" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="258" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99371" i_stop="99276" i_length="96">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99275" g_stop="99186" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="348" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99185" i_stop="99030" i_length="156">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99029" g_stop="98940" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="438" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98939" i_stop="98602" i_length="338">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98601" g_stop="98392" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="648" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98391" i_stop="98311" i_length="81">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98310" g_stop="98200" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="759" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98199" i_stop="97313" i_length="887">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97312" g_stop="97233" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="760" r_stop="840" r_length="81" r_score="0.950"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="97232" i_stop="97146" i_length="87">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97145" g_stop="97124" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="841" r_stop="862" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E726482" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100236" e_stop="100225"/>
          <exon e_start="99957" e_stop="99844"/>
          <exon e_start="99503" e_stop="99372"/>
          <exon e_start="99275" e_stop="99186"/>
          <exon e_start="99029" e_stop="98940"/>
          <exon e_start="98601" e_stop="98392"/>
          <exon e_start="98310" e_stop="98200"/>
          <exon e_start="97312" e_stop="97233"/>
          <exon e_start="97145" e_stop="97124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATAGCAAGGTAAGGTTGTGCAAATTTTTGTAGACTCTTTCACGTGCAAAATTACTTATCGGACAAGGTCCAGCTTAGAAACAAACTTGTCTATCATATATCAAAGAAGAAAAATTTGCTATTGATTTTTACAAACTCCTTACTTTTTTTGTCAAATTAACAAAATGTGCAGATAATTGGAAGATTTTGTTCCTAGTTTAGTTTATTTTTTCCTGTTAATAACTCTAAATATTTTTCCAGTGTGGTTTTTATAATTCGACCTGCATTGTTGGTTAGGTATGCATTGTTATGGAACAAATGCTTCGACTACTTCATGAGTGTGGGTTACCTGTGGATGATGTGGATTTCATAAACTCAGATGGAAAGACAATGAACAAGCTACTCGTGGAGGTTAATTTCTAAAACTAGACTCCTTTGGCCACTTATGAACAAGAATTGGCAACTGAAAATTACAAATTTTAGTCCAAAAACTTCCCATCCTATTAAAATTTTGTTGTCCTCATGTTATGTGCAAATAACCTTCACTTCAACCATGTTAAACTAATTCAGGAATCCCAAGAATAATTTAATCTATTTTCTTTGTTGAATTGTTGGCTTTTCGCACTAATATGGAGTAATTAACTTTCTAGAGTCTATAATAATTGTCGGATTCTTTCTAACCAACTTTTCCAACTACTAAAGATAATATTCCTATTTCCTGACATAGTTCTCTTTCGTATTGTGTCGTTAGGCAAAACCACGCATGACTCTCTTCACAGGTAGCTCAAGGGTGGCAGAGAAGTTAGCTGATGACCTAAGCGGTCGAGTCAAACTAGAAGATGCTGGATTCGACTGGAAGATCCTTGGGCCCGATGTCAATGAGGTTTACATAATCTGTTATCGACAGAGTTTGTTGCATTTTGGAAAGGCTTTTTTAAAGATTTTTTATTTACTTATTGTGATTGTTGGCTTTTGACAGGTGGATTACGTTGCATGGGTTTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCAGCTGAATCAATATTGTTCATGCATGAGGTGTGCTTAGTCCTTCTATTTTCTTCATGGAAGTTAAATGTTTTGAGATACAAAATCTATGTGGTTTATATAAGTTTTGGAAAAAGTAATGTAATATGGTTTCATTGAATTTCGTTCAAAGAACTCTCTTTTCTAACCATTTTTATTTTGGTGCAGAATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACGGTAAGAATACCTAATGCTAATGTTAATTTGGAGATTCTGTGTCCATCATTTGATACAATTTACTAGAAGTTTGAAAGTATCGATACGTTGAATTTGAATCTATTTTGGATAGTCTTTTTGATGTTCAGAATATTATTCACTCAAACAAGTGCAGAAATCTGGGACTTTGTGTGATATAAACAGAATATTTATAATAAAGGAGGAGCTCACCTTTTGTTAACATGATTTATCCGTTATTTTCTTTCTTGAATTACGCATTCTTTGTAGTACATTGTCAAGTAATGCCAACAATCTTGTCAGAAATACCTGGCGATAATTGTTATGTCTTGCTCCTGCAGGTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAGGTAATTGAATATTCTGAATTAAATGTCAAGTTGGGTAATTTTCTCGCTGATTCATCAAATCTTGCTGTTTTTTTCCCCTAGGTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAAGTAAGAAAATGTTCCCGTTTCTATTGAAATATCTGTTGCTCTATATACAACTTAAAATGTTTCACGTGCAACTAGCAGAAAATATCTCGAATTCTTTCTCTAGAAAGCATCCAGAATTTGTACATAAACTTATTTTTTGTACTTCATCGGATGAATCTAGAATAGAAAAGGCAATAACAGCACGAAAGATGCCAATGCCAAATCAGTTGTCGTTCCCTACCGAAGAAAATTTGTAGATCAAAACTGTTGAATTTTCTATTATGTCCCAAAAGTCAGTGTAGGAGGAGGGAAGGAAGGTGAGAAGAGAGGTGTAGTGTTCACTGTTAACTTACATGAAGCATTTGTAGTAATGCTGTTTGCTATTTTACCTTACTGTAGAATTGAAGAGCCACAGAGAAGGGAAAGAGACGAAATTTTGCTAGTCTCATATCTATAAAACCTCAGGAAGATACAAAAGTTTGGATAGTCCTAAATAGAATCAGGACACAGTACCAAAGAAAATCAAACTATATTGCTATACGTTATACTAGCCAGGGGTTCAGGGCTGAATCACCTCCATCAATTGTCTAATCTGCTGTTTAGATTAGTTTCTGTATATAACATTAAGGCACGTTGAACAAAAGAAGTTTAGATTCAGACTTGGGAACTTAAACCTTTATAATACATTTTGACTTATTGAATTGTTTGCATCATTTAGAACTTAGAATTTAGCATTGAGTGATAATGATAAAGTTGCTATGCTTTGTTGTTAAGATGGCTGGCATTTCTATCACGAAAAGAAAAAAACGAGAGAAATGAAAAGACTTGAGATTTGAAAAGCTTTATTAGCTATACCCCTATATGTACATGATTATGTAGTTATTTCAATTGTGAAATTCCCTTTTCAGAAAGTGATT-GGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACAGGGGCTCCCCAGAATCACTGGTCAGCAACTTCTTATCATCTTCTATCTGTTATTGTAAATACACCTATTTAGCTTATTAACTCTCCTAAACAATGCCCATAATGTAGGTTTGGTCCTGCCGGGGACCCC</genome_strand>
        <mrna_strand>GTTGATAGCAAG...........................................................................................................................................................................................................................................................................GTATGCATTGTTATGGAACAAATGCTTCGACTACTTCATGAGTGTGGGTTACCTGTGGATGATGTGGATTTCATAAACTCAGATGGAAAGACAATGAACAAGCTACTCGTGGAG....................................................................................................................................................................................................................................................................................................................................................GCAAAACCACGCATGACTCTCTTCACAGGTAGCTCAAGGGTGGCAGAGAAGTTAGCTGATGACCTAAGCGGTCGAGTCAAACTAGAAGATGCTGGATTCGACTGGAAGATCCTTGGGCCCGATGTCAATGAG................................................................................................GTGGATTACGTTGCATGGGTTTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCAGCTGAATCAATATTGTTCATGCATGAG............................................................................................................................................................AATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACG..................................................................................................................................................................................................................................................................................................................................................GTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAG.................................................................................GTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGATTGGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAAACACAGGGGCTCCCCAGAATCACTG.......................................................................................GTTTGGTCCTGCCGGGGACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698355" ref_strand="+" ref_description="SGN-E698355 [FA06AB10]">
      <seq>aagatgctggattcgactggaagatcctcgcccccgatgtcaatgaggtggattacgttgcatgggtttgtgaccaagatgcatatgcatgtagtggtcagaagtgttcagctgaatcaatattgttcatgcatgagaattggagtaaaagttctctcttagacaaaatgaccgagcttgctgcaagaagaaagttagatgatttaactattggtcctgtccttacggttacaactgaaacaatgctggaccatgcgaagaaattacttcagatacctggatcgagattgctctttggtggtgaagccttacagaaccattcgatcccaaaaatttatggagccattaagcccactgctatttttgtacctcttgaagaaatactcaaagatgaacattatcctctcgtgaccaaagagatttttgggccattccaggttgtgactgagtacaaagataatcagcttccactggtcctcgatgcccttgaaaagatgcatgcacatttaacagctgctgtggtttccaatgatatattgttcctgcaaaaagtgattggaaattcagttaatggaaccacttatgctggattgagagcaagaacaacaggggctccccagaatcactggtttggtcctgccggggacccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99718" stop="96824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99418" g_stop="99372" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99371" i_stop="99276" i_length="96">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99275" g_stop="99186" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="137" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99185" i_stop="99030" i_length="156">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99029" g_stop="98940" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="227" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98939" i_stop="98602" i_length="338">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98601" g_stop="98392" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="437" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98391" i_stop="98311" i_length="81">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98310" g_stop="98200" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="548" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98199" i_stop="97313" i_length="887">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97312" g_stop="97233" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="628" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97232" i_stop="97146" i_length="87">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97145" g_stop="97124" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="650" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E698355" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99418" e_stop="99372"/>
          <exon e_start="99275" e_stop="99186"/>
          <exon e_start="99029" e_stop="98940"/>
          <exon e_start="98601" e_stop="98392"/>
          <exon e_start="98310" e_stop="98200"/>
          <exon e_start="97312" e_stop="97233"/>
          <exon e_start="97145" e_stop="97124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGCTGGATTCGACTGGAAGATCCTTGGGCCCGATGTCAATGAGGTTTACATAATCTGTTATCGACAGAGTTTGTTGCATTTTGGAAAGGCTTTTTTAAAGATTTTTTATTTACTTATTGTGATTGTTGGCTTTTGACAGGTGGATTACGTTGCATGGGTTTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCAGCTGAATCAATATTGTTCATGCATGAGGTGTGCTTAGTCCTTCTATTTTCTTCATGGAAGTTAAATGTTTTGAGATACAAAATCTATGTGGTTTATATAAGTTTTGGAAAAAGTAATGTAATATGGTTTCATTGAATTTCGTTCAAAGAACTCTCTTTTCTAACCATTTTTATTTTGGTGCAGAATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACGGTAAGAATACCTAATGCTAATGTTAATTTGGAGATTCTGTGTCCATCATTTGATACAATTTACTAGAAGTTTGAAAGTATCGATACGTTGAATTTGAATCTATTTTGGATAGTCTTTTTGATGTTCAGAATATTATTCACTCAAACAAGTGCAGAAATCTGGGACTTTGTGTGATATAAACAGAATATTTATAATAAAGGAGGAGCTCACCTTTTGTTAACATGATTTATCCGTTATTTTCTTTCTTGAATTACGCATTCTTTGTAGTACATTGTCAAGTAATGCCAACAATCTTGTCAGAAATACCTGGCGATAATTGTTATGTCTTGCTCCTGCAGGTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAGGTAATTGAATATTCTGAATTAAATGTCAAGTTGGGTAATTTTCTCGCTGATTCATCAAATCTTGCTGTTTTTTTCCCCTAGGTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAAGTAAGAAAATGTTCCCGTTTCTATTGAAATATCTGTTGCTCTATATACAACTTAAAATGTTTCACGTGCAACTAGCAGAAAATATCTCGAATTCTTTCTCTAGAAAGCATCCAGAATTTGTACATAAACTTATTTTTTGTACTTCATCGGATGAATCTAGAATAGAAAAGGCAATAACAGCACGAAAGATGCCAATGCCAAATCAGTTGTCGTTCCCTACCGAAGAAAATTTGTAGATCAAAACTGTTGAATTTTCTATTATGTCCCAAAAGTCAGTGTAGGAGGAGGGAAGGAAGGTGAGAAGAGAGGTGTAGTGTTCACTGTTAACTTACATGAAGCATTTGTAGTAATGCTGTTTGCTATTTTACCTTACTGTAGAATTGAAGAGCCACAGAGAAGGGAAAGAGACGAAATTTTGCTAGTCTCATATCTATAAAACCTCAGGAAGATACAAAAGTTTGGATAGTCCTAAATAGAATCAGGACACAGTACCAAAGAAAATCAAACTATATTGCTATACGTTATACTAGCCAGGGGTTCAGGGCTGAATCACCTCCATCAATTGTCTAATCTGCTGTTTAGATTAGTTTCTGTATATAACATTAAGGCACGTTGAACAAAAGAAGTTTAGATTCAGACTTGGGAACTTAAACCTTTATAATACATTTTGACTTATTGAATTGTTTGCATCATTTAGAACTTAGAATTTAGCATTGAGTGATAATGATAAAGTTGCTATGCTTTGTTGTTAAGATGGCTGGCATTTCTATCACGAAAAGAAAAAAACGAGAGAAATGAAAAGACTTGAGATTTGAAAAGCTTTATTAGCTATACCCCTATATGTACATGATTATGTAGTTATTTCAATTGTGAAATTCCCTTTTCAGAAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACAGGGGCTCCCCAGAATCACTGGTCAGCAACTTCTTATCATCTTCTATCTGTTATTGTAAATACACCTATTTAGCTTATTAACTCTCCTAAACAATGCCCATAATGTAGGTTTGGTCCTGCCGGGGACCCC</genome_strand>
        <mrna_strand>AAGATGCTGGATTCGACTGGAAGATCCTCGCCCCCGATGTCAATGAG................................................................................................GTGGATTACGTTGCATGGGTTTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCAGCTGAATCAATATTGTTCATGCATGAG............................................................................................................................................................AATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACG..................................................................................................................................................................................................................................................................................................................................................GTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAG.................................................................................GTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACAGGGGCTCCCCAGAATCACTG.......................................................................................GTTTGGTCCTGCCGGGGACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688699" ref_strand="+" ref_description="SGN-E688699 [t3_tus_54_H18]">
      <seq>ttcatgcatgagaattggagtaaaagttctctcttagacaaaatgaccgagcttgctgcaagaagaaagttagatgatttaactattggtcctgtccttacggttacaactgaaacaatgctggaccatgcgaagaaattacttcagatacctggatcgagattgctctttggtggtgaagccttacagaaccattcgatcccaaaaatttatggagccattaagcccactgctatttttgtacctcttgaagaaatactcaaagatgaacattatcctctcgtgaccaaagagatttttgggccattccaggttgtgactgagtacaaagataatcagcttccactggtcctcgatgcccttgaaaagatgcatgcacatttaacagctgctgtggtttccaatgatatattgttcctgcaaaaagtgattggaaattcagttaatggaaccacttatgctggattgagagcaagaacaacaggggctccccagaaatcactggttggtcctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99334" stop="96931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99197" g_stop="99186" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99185" i_stop="99030" i_length="156">
            <donor d_prob="0.824" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99029" g_stop="98940" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="102" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98939" i_stop="98602" i_length="338">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98601" g_stop="98392" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="312" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98391" i_stop="98311" i_length="81">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98310" g_stop="98200" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="423" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98199" i_stop="97313" i_length="887">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97312" g_stop="97233" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="504" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97232" i_stop="97146" i_length="87">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97145" g_stop="97133" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="516" r_length="12" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E688699" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99197" e_stop="99186"/>
          <exon e_start="99029" e_stop="98940"/>
          <exon e_start="98601" e_stop="98392"/>
          <exon e_start="98310" e_stop="98200"/>
          <exon e_start="97312" e_stop="97233"/>
          <exon e_start="97145" e_stop="97133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATGCATGAGGTGTGCTTAGTCCTTCTATTTTCTTCATGGAAGTTAAATGTTTTGAGATACAAAATCTATGTGGTTTATATAAGTTTTGGAAAAAGTAATGTAATATGGTTTCATTGAATTTCGTTCAAAGAACTCTCTTTTCTAACCATTTTTATTTTGGTGCAGAATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACGGTAAGAATACCTAATGCTAATGTTAATTTGGAGATTCTGTGTCCATCATTTGATACAATTTACTAGAAGTTTGAAAGTATCGATACGTTGAATTTGAATCTATTTTGGATAGTCTTTTTGATGTTCAGAATATTATTCACTCAAACAAGTGCAGAAATCTGGGACTTTGTGTGATATAAACAGAATATTTATAATAAAGGAGGAGCTCACCTTTTGTTAACATGATTTATCCGTTATTTTCTTTCTTGAATTACGCATTCTTTGTAGTACATTGTCAAGTAATGCCAACAATCTTGTCAGAAATACCTGGCGATAATTGTTATGTCTTGCTCCTGCAGGTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAGGTAATTGAATATTCTGAATTAAATGTCAAGTTGGGTAATTTTCTCGCTGATTCATCAAATCTTGCTGTTTTTTTCCCCTAGGTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAAGTAAGAAAATGTTCCCGTTTCTATTGAAATATCTGTTGCTCTATATACAACTTAAAATGTTTCACGTGCAACTAGCAGAAAATATCTCGAATTCTTTCTCTAGAAAGCATCCAGAATTTGTACATAAACTTATTTTTTGTACTTCATCGGATGAATCTAGAATAGAAAAGGCAATAACAGCACGAAAGATGCCAATGCCAAATCAGTTGTCGTTCCCTACCGAAGAAAATTTGTAGATCAAAACTGTTGAATTTTCTATTATGTCCCAAAAGTCAGTGTAGGAGGAGGGAAGGAAGGTGAGAAGAGAGGTGTAGTGTTCACTGTTAACTTACATGAAGCATTTGTAGTAATGCTGTTTGCTATTTTACCTTACTGTAGAATTGAAGAGCCACAGAGAAGGGAAAGAGACGAAATTTTGCTAGTCTCATATCTATAAAACCTCAGGAAGATACAAAAGTTTGGATAGTCCTAAATAGAATCAGGACACAGTACCAAAGAAAATCAAACTATATTGCTATACGTTATACTAGCCAGGGGTTCAGGGCTGAATCACCTCCATCAATTGTCTAATCTGCTGTTTAGATTAGTTTCTGTATATAACATTAAGGCACGTTGAACAAAAGAAGTTTAGATTCAGACTTGGGAACTTAAACCTTTATAATACATTTTGACTTATTGAATTGTTTGCATCATTTAGAACTTAGAATTTAGCATTGAGTGATAATGATAAAGTTGCTATGCTTTGTTGTTAAGATGGCTGGCATTTCTATCACGAAAAGAAAAAAACGAGAGAAATGAAAAGACTTGAGATTTGAAAAGCTTTATTAGCTATACCCCTATATGTACATGATTATGTAGTTATTTCAATTGTGAAATTCCCTTTTCAGAAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACAGGGGCTCCCCAG-AATCACTGGTCAGCAACTTCTTATCATCTTCTATCTGTTATTGTAAATACACCTATTTAGCTTATTAACTCTCCTAAACAATGCCCATAATGTAGGTTTGGTCCTGCC</genome_strand>
        <mrna_strand>TTCATGCATGAG............................................................................................................................................................AATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACG..................................................................................................................................................................................................................................................................................................................................................GTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAG.................................................................................GTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACAGGGGCTCCCCAGAAATCACTG.......................................................................................G-TTGGTCCTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259368" ref_strand="+" ref_description="SGN-E259368 [cLEG-43-H19]">
      <seq>tcatgccatgagaattggagtaaaagttctctcttagacaaaatgaccgagcttgctgcaagaagaaagttagatgatttaactattggtcctgtccttacggttaccaactgaaacaatgctggaccatgcgaagaaattacttcagataccctggatcgagattgctctttggtggtgaagccttacagaaccattcgatcccaaaaatttatggagccattaagcccactgctatttttgtacctcttgaagaaatactcaaagatgaacattatcctctcgtgaccaaagagatttttgggccattccaggttgtgactgagtaccaaagataatcagcttccactggtcctcgatgcccttgaaaagatgcatgcacatttaacagctgctgtggtttccaatgatatattgttcctgcaaaaagtgattggaaattcagttaatggaaccacttatgctggattgagagcaagaacaacaggggctccccagaatcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99334" stop="96934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99196" g_stop="99186" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="0.818"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99185" i_stop="99030" i_length="156">
            <donor d_prob="0.824" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99029" g_stop="98940" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="102" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98939" i_stop="98602" i_length="338">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98601" g_stop="98392" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="314" r_length="212" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98391" i_stop="98311" i_length="81">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98310" g_stop="98200" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="426" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98199" i_stop="97313" i_length="887">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97312" g_stop="97234" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="505" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E259368" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99196" e_stop="99186"/>
          <exon e_start="99029" e_stop="98940"/>
          <exon e_start="98601" e_stop="98392"/>
          <exon e_start="98310" e_stop="98200"/>
          <exon e_start="97312" e_stop="97234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATG-CATGAGGTGTGCTTAGTCCTTCTATTTTCTTCATGGAAGTTAAATGTTTTGAGATACAAAATCTATGTGGTTTATATAAGTTTTGGAAAAAGTAATGTAATATGGTTTCATTGAATTTCGTTCAAAGAACTCTCTTTTCTAACCATTTTTATTTTGGTGCAGAATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACGGTAAGAATACCTAATGCTAATGTTAATTTGGAGATTCTGTGTCCATCATTTGATACAATTTACTAGAAGTTTGAAAGTATCGATACGTTGAATTTGAATCTATTTTGGATAGTCTTTTTGATGTTCAGAATATTATTCACTCAAACAAGTGCAGAAATCTGGGACTTTGTGTGATATAAACAGAATATTTATAATAAAGGAGGAGCTCACCTTTTGTTAACATGATTTATCCGTTATTTTCTTTCTTGAATTACGCATTCTTTGTAGTACATTGTCAAGTAATGCCAACAATCTTGTCAGAAATACCTGGCGATAATTGTTATGTCTTGCTCCTGCAGGTTA-CAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATA-CCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAGGTAATTGAATATTCTGAATTAAATGTCAAGTTGGGTAATTTTCTCGCTGATTCATCAAATCTTGCTGTTTTTTTCCCCTAGGTTGTGACTGAGTA-CAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAAGTAAGAAAATGTTCCCGTTTCTATTGAAATATCTGTTGCTCTATATACAACTTAAAATGTTTCACGTGCAACTAGCAGAAAATATCTCGAATTCTTTCTCTAGAAAGCATCCAGAATTTGTACATAAACTTATTTTTTGTACTTCATCGGATGAATCTAGAATAGAAAAGGCAATAACAGCACGAAAGATGCCAATGCCAAATCAGTTGTCGTTCCCTACCGAAGAAAATTTGTAGATCAAAACTGTTGAATTTTCTATTATGTCCCAAAAGTCAGTGTAGGAGGAGGGAAGGAAGGTGAGAAGAGAGGTGTAGTGTTCACTGTTAACTTACATGAAGCATTTGTAGTAATGCTGTTTGCTATTTTACCTTACTGTAGAATTGAAGAGCCACAGAGAAGGGAAAGAGACGAAATTTTGCTAGTCTCATATCTATAAAACCTCAGGAAGATACAAAAGTTTGGATAGTCCTAAATAGAATCAGGACACAGTACCAAAGAAAATCAAACTATATTGCTATACGTTATACTAGCCAGGGGTTCAGGGCTGAATCACCTCCATCAATTGTCTAATCTGCTGTTTAGATTAGTTTCTGTATATAACATTAAGGCACGTTGAACAAAAGAAGTTTAGATTCAGACTTGGGAACTTAAACCTTTATAATACATTTTGACTTATTGAATTGTTTGCATCATTTAGAACTTAGAATTTAGCATTGAGTGATAATGATAAAGTTGCTATGCTTTGTTGTTAAGATGGCTGGCATTTCTATCACGAAAAGAAAAAAACGAGAGAAATGAAAAGACTTGAGATTTGAAAAGCTTTATTAGCTATACCCCTATATGTACATGATTATGTAGTTATTTCAATTGTGAAATTCCCTTTTCAGAAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACAGGGGCTCCCCAGAATCACT</genome_strand>
        <mrna_strand>TCATGCCATGAG............................................................................................................................................................AATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACG..................................................................................................................................................................................................................................................................................................................................................GTTACCAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAG.................................................................................GTTGTGACTGAGTACCAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACAGGGGCTCCCCAGAATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550942" ref_strand="+" ref_description="SGN-E550942 [TUS-54-H18]">
      <seq>ttcatgcatgagaattggagtaaaagttctctcttagacaaaatgaccgagcttgctgcaagaagaaagttagatgatttaactattggtcctgtccttacggttacaactgaaacaatgctggaccatgcgaagaaattacttcagatacctggatcgagattgctctttggtggtgaagccttacagaaccattcgatcccaaaaatttatggagccattaagcccactgctatttttgtacctcttgaagaaatactcaaagatgaacattatcctctcgtgaccaaagagatttttgggccattccaggttgtgactgagtacaaagataatcagcttccactggtcctcgatgcccttgaaaagatgcatgcacatttaacagctgctgtggtttccaatgatatattgttcctgcaaaaagtgattggaaattcagttaatggaaccacttatgctggattgagagcaagaacaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99334" stop="96953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99197" g_stop="99186" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99185" i_stop="99030" i_length="156">
            <donor d_prob="0.824" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99029" g_stop="98940" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="102" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98939" i_stop="98602" i_length="338">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98601" g_stop="98392" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="312" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98391" i_stop="98311" i_length="81">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98310" g_stop="98200" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="423" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98199" i_stop="97313" i_length="887">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97312" g_stop="97253" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="483" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E550942" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99197" e_stop="99186"/>
          <exon e_start="99029" e_stop="98940"/>
          <exon e_start="98601" e_stop="98392"/>
          <exon e_start="98310" e_stop="98200"/>
          <exon e_start="97312" e_stop="97253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATGCATGAGGTGTGCTTAGTCCTTCTATTTTCTTCATGGAAGTTAAATGTTTTGAGATACAAAATCTATGTGGTTTATATAAGTTTTGGAAAAAGTAATGTAATATGGTTTCATTGAATTTCGTTCAAAGAACTCTCTTTTCTAACCATTTTTATTTTGGTGCAGAATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACGGTAAGAATACCTAATGCTAATGTTAATTTGGAGATTCTGTGTCCATCATTTGATACAATTTACTAGAAGTTTGAAAGTATCGATACGTTGAATTTGAATCTATTTTGGATAGTCTTTTTGATGTTCAGAATATTATTCACTCAAACAAGTGCAGAAATCTGGGACTTTGTGTGATATAAACAGAATATTTATAATAAAGGAGGAGCTCACCTTTTGTTAACATGATTTATCCGTTATTTTCTTTCTTGAATTACGCATTCTTTGTAGTACATTGTCAAGTAATGCCAACAATCTTGTCAGAAATACCTGGCGATAATTGTTATGTCTTGCTCCTGCAGGTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAGGTAATTGAATATTCTGAATTAAATGTCAAGTTGGGTAATTTTCTCGCTGATTCATCAAATCTTGCTGTTTTTTTCCCCTAGGTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAAGTAAGAAAATGTTCCCGTTTCTATTGAAATATCTGTTGCTCTATATACAACTTAAAATGTTTCACGTGCAACTAGCAGAAAATATCTCGAATTCTTTCTCTAGAAAGCATCCAGAATTTGTACATAAACTTATTTTTTGTACTTCATCGGATGAATCTAGAATAGAAAAGGCAATAACAGCACGAAAGATGCCAATGCCAAATCAGTTGTCGTTCCCTACCGAAGAAAATTTGTAGATCAAAACTGTTGAATTTTCTATTATGTCCCAAAAGTCAGTGTAGGAGGAGGGAAGGAAGGTGAGAAGAGAGGTGTAGTGTTCACTGTTAACTTACATGAAGCATTTGTAGTAATGCTGTTTGCTATTTTACCTTACTGTAGAATTGAAGAGCCACAGAGAAGGGAAAGAGACGAAATTTTGCTAGTCTCATATCTATAAAACCTCAGGAAGATACAAAAGTTTGGATAGTCCTAAATAGAATCAGGACACAGTACCAAAGAAAATCAAACTATATTGCTATACGTTATACTAGCCAGGGGTTCAGGGCTGAATCACCTCCATCAATTGTCTAATCTGCTGTTTAGATTAGTTTCTGTATATAACATTAAGGCACGTTGAACAAAAGAAGTTTAGATTCAGACTTGGGAACTTAAACCTTTATAATACATTTTGACTTATTGAATTGTTTGCATCATTTAGAACTTAGAATTTAGCATTGAGTGATAATGATAAAGTTGCTATGCTTTGTTGTTAAGATGGCTGGCATTTCTATCACGAAAAGAAAAAAACGAGAGAAATGAAAAGACTTGAGATTTGAAAAGCTTTATTAGCTATACCCCTATATGTACATGATTATGTAGTTATTTCAATTGTGAAATTCCCTTTTCAGAAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACA</genome_strand>
        <mrna_strand>TTCATGCATGAG............................................................................................................................................................AATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACG..................................................................................................................................................................................................................................................................................................................................................GTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAG.................................................................................GTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280788" ref_strand="-" ref_description="SGN-E280788 [cLEL-6-B17](-)">
      <seq>aaagaattcggcacgagcgatcccaaaaatttatggatttattaagcccactgctatttttgtgcgtgttgaagaaatactcaaagatgactcttatcctctcgtgaccaaagagatttttgggccattccaggttgtgactgagtacaaagataatcagcttccactggtcctcgatgcccttgaaaagatgcatgcacatttaacagctgctgtggtttccaatgatatattgttcctgcaaaaagtgattggaaattcagttaatggaaccacttatgctggattgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98807" stop="96965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98526" g_stop="98392" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98391" i_stop="98311" i_length="81">
            <donor d_prob="0.958" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98310" g_stop="98200" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="244" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98199" i_stop="97313" i_length="887">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97312" g_stop="97265" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="292" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E280788" ref_strand="-">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280788" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="98526" e_stop="98392"/>
          <exon e_start="98310" e_stop="98200"/>
          <exon e_start="97312" e_stop="97265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAGGTAATTGAATATTCTGAATTAAATGTCAAGTTGGGTAATTTTCTCGCTGATTCATCAAATCTTGCTGTTTTTTTCCCCTAGGTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAAGTAAGAAAATGTTCCCGTTTCTATTGAAATATCTGTTGCTCTATATACAACTTAAAATGTTTCACGTGCAACTAGCAGAAAATATCTCGAATTCTTTCTCTAGAAAGCATCCAGAATTTGTACATAAACTTATTTTTTGTACTTCATCGGATGAATCTAGAATAGAAAAGGCAATAACAGCACGAAAGATGCCAATGCCAAATCAGTTGTCGTTCCCTACCGAAGAAAATTTGTAGATCAAAACTGTTGAATTTTCTATTATGTCCCAAAAGTCAGTGTAGGAGGAGGGAAGGAAGGTGAGAAGAGAGGTGTAGTGTTCACTGTTAACTTACATGAAGCATTTGTAGTAATGCTGTTTGCTATTTTACCTTACTGTAGAATTGAAGAGCCACAGAGAAGGGAAAGAGACGAAATTTTGCTAGTCTCATATCTATAAAACCTCAGGAAGATACAAAAGTTTGGATAGTCCTAAATAGAATCAGGACACAGTACCAAAGAAAATCAAACTATATTGCTATACGTTATACTAGCCAGGGGTTCAGGGCTGAATCACCTCCATCAATTGTCTAATCTGCTGTTTAGATTAGTTTCTGTATATAACATTAAGGCACGTTGAACAAAAGAAGTTTAGATTCAGACTTGGGAACTTAAACCTTTATAATACATTTTGACTTATTGAATTGTTTGCATCATTTAGAACTTAGAATTTAGCATTGAGTGATAATGATAAAGTTGCTATGCTTTGTTGTTAAGATGGCTGGCATTTCTATCACGAAAAGAAAAAAACGAGAGAAATGAAAAGACTTGAGATTTGAAAAGCTTTATTAGCTATACCCCTATATGTACATGATTATGTAGTTATTTCAATTGTGAAATTCCCTTTTCAGAAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGA</genome_strand>
        <mrna_strand>AAAGAATT-CGGCACGA-GCGATCCCAAAAATTTATGGATTTATTAAGCCCACTGCTATTTTTGTGCGTGTTGAAGAAATACTCAAAGATGACTCTTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAG.................................................................................GTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325228" ref_strand="+" ref_description="SGN-E325228 [cTOC-1-O17]">
      <seq>ttgtgttcaagatgcatatgcatgtagtggtcagaagtgttcatctgaatcaatattgttcatgcatgagaattggagtaaaagttctctcttagacaaaatgaccgagcttgctgcaagaagaaagttagatgatttaactattggtcctgtccttacggttacaactgaaacaatgctggaccatgcgaagaaattacttcagatacctggatcgagattgctctttggtggtgaagccttacagaaccattcgatcccaaaaatttatggagccattaagcccactgctatttttgtacctcttgaagaaatactcaaagatgaacattatcctctcgtgaccaaagagatttttgggccattccaggttgtgactgagtacaaagataatcagcttccactggtcctcgatgcccttgaaaagatgcatgcacatttaacagctgctgtggtttccaatgatatattgttcctgcaaaaagtgattggaaattcagttaatggaaccacttatgctggattgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99555" stop="96966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99255" g_stop="99186" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99185" i_stop="99030" i_length="156">
            <donor d_prob="0.824" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99029" g_stop="98940" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="160" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98939" i_stop="98602" i_length="338">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98601" g_stop="98392" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="370" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98391" i_stop="98311" i_length="81">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98310" g_stop="98200" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="481" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98199" i_stop="97313" i_length="887">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97312" g_stop="97266" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="528" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E325228" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99255" e_stop="99186"/>
          <exon e_start="99029" e_stop="98940"/>
          <exon e_start="98601" e_stop="98392"/>
          <exon e_start="98310" e_stop="98200"/>
          <exon e_start="97312" e_stop="97266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCAGCTGAATCAATATTGTTCATGCATGAGGTGTGCTTAGTCCTTCTATTTTCTTCATGGAAGTTAAATGTTTTGAGATACAAAATCTATGTGGTTTATATAAGTTTTGGAAAAAGTAATGTAATATGGTTTCATTGAATTTCGTTCAAAGAACTCTCTTTTCTAACCATTTTTATTTTGGTGCAGAATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACGGTAAGAATACCTAATGCTAATGTTAATTTGGAGATTCTGTGTCCATCATTTGATACAATTTACTAGAAGTTTGAAAGTATCGATACGTTGAATTTGAATCTATTTTGGATAGTCTTTTTGATGTTCAGAATATTATTCACTCAAACAAGTGCAGAAATCTGGGACTTTGTGTGATATAAACAGAATATTTATAATAAAGGAGGAGCTCACCTTTTGTTAACATGATTTATCCGTTATTTTCTTTCTTGAATTACGCATTCTTTGTAGTACATTGTCAAGTAATGCCAACAATCTTGTCAGAAATACCTGGCGATAATTGTTATGTCTTGCTCCTGCAGGTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAGGTAATTGAATATTCTGAATTAAATGTCAAGTTGGGTAATTTTCTCGCTGATTCATCAAATCTTGCTGTTTTTTTCCCCTAGGTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAAGTAAGAAAATGTTCCCGTTTCTATTGAAATATCTGTTGCTCTATATACAACTTAAAATGTTTCACGTGCAACTAGCAGAAAATATCTCGAATTCTTTCTCTAGAAAGCATCCAGAATTTGTACATAAACTTATTTTTTGTACTTCATCGGATGAATCTAGAATAGAAAAGGCAATAACAGCACGAAAGATGCCAATGCCAAATCAGTTGTCGTTCCCTACCGAAGAAAATTTGTAGATCAAAACTGTTGAATTTTCTATTATGTCCCAAAAGTCAGTGTAGGAGGAGGGAAGGAAGGTGAGAAGAGAGGTGTAGTGTTCACTGTTAACTTACATGAAGCATTTGTAGTAATGCTGTTTGCTATTTTACCTTACTGTAGAATTGAAGAGCCACAGAGAAGGGAAAGAGACGAAATTTTGCTAGTCTCATATCTATAAAACCTCAGGAAGATACAAAAGTTTGGATAGTCCTAAATAGAATCAGGACACAGTACCAAAGAAAATCAAACTATATTGCTATACGTTATACTAGCCAGGGGTTCAGGGCTGAATCACCTCCATCAATTGTCTAATCTGCTGTTTAGATTAGTTTCTGTATATAACATTAAGGCACGTTGAACAAAAGAAGTTTAGATTCAGACTTGGGAACTTAAACCTTTATAATACATTTTGACTTATTGAATTGTTTGCATCATTTAGAACTTAGAATTTAGCATTGAGTGATAATGATAAAGTTGCTATGCTTTGTTGTTAAGATGGCTGGCATTTCTATCACGAAAAGAAAAAAACGAGAGAAATGAAAAGACTTGAGATTTGAAAAGCTTTATTAGCTATACCCCTATATGTACATGATTATGTAGTTATTTCAATTGTGAAATTCCCTTTTCAGAAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAG</genome_strand>
        <mrna_strand>TTGTGTTCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCATCTGAATCAATATTGTTCATGCATGAG............................................................................................................................................................AATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACG..................................................................................................................................................................................................................................................................................................................................................GTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAG.................................................................................GTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280865" ref_strand="-" ref_description="SGN-E280865 [cLEL-6-A17](-)">
      <seq>aaagaattcggcacgagcgatcccaaaaatttatggtgcctttaagcccactgctatttttgggccgcttgaagaaatactcaaagacgaccattatcctctcgtgaccaaagagatttttgggccattccaggttgtgactgagtacaaagataatcagcttccactggtcctcgatgcccttgaaaagatgcatgcacatttaacagctgctgtggtttccaatgatatattgttcctgcaaaaagtgattggaaattcagttaatggaaccacttatgctggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98807" stop="96969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98526" g_stop="98392" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.881"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98391" i_stop="98311" i_length="81">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98310" g_stop="98200" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="244" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98199" i_stop="97313" i_length="887">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97312" g_stop="97269" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="288" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E280865" ref_strand="-">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280865" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="98526" e_stop="98392"/>
          <exon e_start="98310" e_stop="98200"/>
          <exon e_start="97312" e_stop="97269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAGGTAATTGAATATTCTGAATTAAATGTCAAGTTGGGTAATTTTCTCGCTGATTCATCAAATCTTGCTGTTTTTTTCCCCTAGGTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAAGTAAGAAAATGTTCCCGTTTCTATTGAAATATCTGTTGCTCTATATACAACTTAAAATGTTTCACGTGCAACTAGCAGAAAATATCTCGAATTCTTTCTCTAGAAAGCATCCAGAATTTGTACATAAACTTATTTTTTGTACTTCATCGGATGAATCTAGAATAGAAAAGGCAATAACAGCACGAAAGATGCCAATGCCAAATCAGTTGTCGTTCCCTACCGAAGAAAATTTGTAGATCAAAACTGTTGAATTTTCTATTATGTCCCAAAAGTCAGTGTAGGAGGAGGGAAGGAAGGTGAGAAGAGAGGTGTAGTGTTCACTGTTAACTTACATGAAGCATTTGTAGTAATGCTGTTTGCTATTTTACCTTACTGTAGAATTGAAGAGCCACAGAGAAGGGAAAGAGACGAAATTTTGCTAGTCTCATATCTATAAAACCTCAGGAAGATACAAAAGTTTGGATAGTCCTAAATAGAATCAGGACACAGTACCAAAGAAAATCAAACTATATTGCTATACGTTATACTAGCCAGGGGTTCAGGGCTGAATCACCTCCATCAATTGTCTAATCTGCTGTTTAGATTAGTTTCTGTATATAACATTAAGGCACGTTGAACAAAAGAAGTTTAGATTCAGACTTGGGAACTTAAACCTTTATAATACATTTTGACTTATTGAATTGTTTGCATCATTTAGAACTTAGAATTTAGCATTGAGTGATAATGATAAAGTTGCTATGCTTTGTTGTTAAGATGGCTGGCATTTCTATCACGAAAAGAAAAAAACGAGAGAAATGAAAAGACTTGAGATTTGAAAAGCTTTATTAGCTATACCCCTATATGTACATGATTATGTAGTTATTTCAATTGTGAAATTCCCTTTTCAGAAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATT</genome_strand>
        <mrna_strand>AAAGAATT-CGGCACGA-GCGATCCCAAAAATTTATGGTGCCTTTAAGCCCACTGCTATTTTTGGGCCGCTTGAAGAAATACTCAAAGACGACCATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAG.................................................................................GTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307163" ref_strand="+" ref_description="SGN-E307163 [cLEY-15-E8]">
      <seq>aaactagaagatgctggattcgactggaagatccttgggcccgatgtcaatgaggtggattacgttgcatgggtttgtgaccaagatgcatatgcatgtagtggtcagaagtgttcagctgaatcaatattgttcatgcatgagaattggagtaaaagttctctcttagacaaaatgaccgagcttgctgcaagaagaaagttagatgatttaactattggtcctgtccttacggttacaactgaaacaatgctggaccatgcgaagaaattacttcagatacctggatcgagattgctctttggtggtgaagccttacagaaccattcgatcccaaaaatttatggagccattaagcccactgctatttttgtacctcttgaagaaatactcaaagatgaacattatcctctcgtgaccaaagagatttttgggccattccaggttgtgactgagtacaaagataatcagcttccactggtcctcgatgcccttgaaaagatgcatgcacatttaacagctgctgtggtttccaatgatatattgttcctgcaaaaagtgattggaaattcagttaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99725" stop="96986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99425" g_stop="99372" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99371" i_stop="99276" i_length="96">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99275" g_stop="99186" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="144" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99185" i_stop="99030" i_length="156">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99029" g_stop="98940" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="234" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98939" i_stop="98602" i_length="338">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98601" g_stop="98392" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="444" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98391" i_stop="98311" i_length="81">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98310" g_stop="98200" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="555" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98199" i_stop="97313" i_length="887">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97312" g_stop="97286" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="582" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E307163" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99425" e_stop="99372"/>
          <exon e_start="99275" e_stop="99186"/>
          <exon e_start="99029" e_stop="98940"/>
          <exon e_start="98601" e_stop="98392"/>
          <exon e_start="98310" e_stop="98200"/>
          <exon e_start="97312" e_stop="97286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTAGAAGATGCTGGATTCGACTGGAAGATCCTTGGGCCCGATGTCAATGAGGTTTACATAATCTGTTATCGACAGAGTTTGTTGCATTTTGGAAAGGCTTTTTTAAAGATTTTTTATTTACTTATTGTGATTGTTGGCTTTTGACAGGTGGATTACGTTGCATGGGTTTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCAGCTGAATCAATATTGTTCATGCATGAGGTGTGCTTAGTCCTTCTATTTTCTTCATGGAAGTTAAATGTTTTGAGATACAAAATCTATGTGGTTTATATAAGTTTTGGAAAAAGTAATGTAATATGGTTTCATTGAATTTCGTTCAAAGAACTCTCTTTTCTAACCATTTTTATTTTGGTGCAGAATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACGGTAAGAATACCTAATGCTAATGTTAATTTGGAGATTCTGTGTCCATCATTTGATACAATTTACTAGAAGTTTGAAAGTATCGATACGTTGAATTTGAATCTATTTTGGATAGTCTTTTTGATGTTCAGAATATTATTCACTCAAACAAGTGCAGAAATCTGGGACTTTGTGTGATATAAACAGAATATTTATAATAAAGGAGGAGCTCACCTTTTGTTAACATGATTTATCCGTTATTTTCTTTCTTGAATTACGCATTCTTTGTAGTACATTGTCAAGTAATGCCAACAATCTTGTCAGAAATACCTGGCGATAATTGTTATGTCTTGCTCCTGCAGGTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAGGTAATTGAATATTCTGAATTAAATGTCAAGTTGGGTAATTTTCTCGCTGATTCATCAAATCTTGCTGTTTTTTTCCCCTAGGTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAAGTAAGAAAATGTTCCCGTTTCTATTGAAATATCTGTTGCTCTATATACAACTTAAAATGTTTCACGTGCAACTAGCAGAAAATATCTCGAATTCTTTCTCTAGAAAGCATCCAGAATTTGTACATAAACTTATTTTTTGTACTTCATCGGATGAATCTAGAATAGAAAAGGCAATAACAGCACGAAAGATGCCAATGCCAAATCAGTTGTCGTTCCCTACCGAAGAAAATTTGTAGATCAAAACTGTTGAATTTTCTATTATGTCCCAAAAGTCAGTGTAGGAGGAGGGAAGGAAGGTGAGAAGAGAGGTGTAGTGTTCACTGTTAACTTACATGAAGCATTTGTAGTAATGCTGTTTGCTATTTTACCTTACTGTAGAATTGAAGAGCCACAGAGAAGGGAAAGAGACGAAATTTTGCTAGTCTCATATCTATAAAACCTCAGGAAGATACAAAAGTTTGGATAGTCCTAAATAGAATCAGGACACAGTACCAAAGAAAATCAAACTATATTGCTATACGTTATACTAGCCAGGGGTTCAGGGCTGAATCACCTCCATCAATTGTCTAATCTGCTGTTTAGATTAGTTTCTGTATATAACATTAAGGCACGTTGAACAAAAGAAGTTTAGATTCAGACTTGGGAACTTAAACCTTTATAATACATTTTGACTTATTGAATTGTTTGCATCATTTAGAACTTAGAATTTAGCATTGAGTGATAATGATAAAGTTGCTATGCTTTGTTGTTAAGATGGCTGGCATTTCTATCACGAAAAGAAAAAAACGAGAGAAATGAAAAGACTTGAGATTTGAAAAGCTTTATTAGCTATACCCCTATATGTACATGATTATGTAGTTATTTCAATTGTGAAATTCCCTTTTCAGAAAGTGATTGGAAATTCAGTTAATGGA</genome_strand>
        <mrna_strand>AAACTAGAAGATGCTGGATTCGACTGGAAGATCCTTGGGCCCGATGTCAATGAG................................................................................................GTGGATTACGTTGCATGGGTTTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCAGCTGAATCAATATTGTTCATGCATGAG............................................................................................................................................................AATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACG..................................................................................................................................................................................................................................................................................................................................................GTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAG.................................................................................GTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGATTGGAAATTCAGTTAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341354" ref_strand="+" ref_description="SGN-E341354 [cTOE-23-C17]">
      <seq>tcgtggaggcaaaaccacgcatgactctcttcacaggtagctcaagggtggcagagaagttagctgatgacctaagcggtcgagtcaaactagaagatgctggattcgactggaagatccttgggcccgatgtcaatgaggtggattacgttgcatgggtttgtgaccaagatgcatatgcatgtagtggtcagaagtgttcagctgaatcaatattgttcatgcatgagaattggagtaaaagttctctcttagacaaaatgaccgagcttgctgcaagaagaaagttagatgatttaactattggtcctgtccttacggttacaactgaaacaatgctggaccatgcgaagaaattacttcagatacctggatcgagattgctctttggtggtgaagccttacagaaccattcgatcccaaaaatttatggagccattaagcccactgctatttttgtacctcttgaagaaatactcaaagatgaacattatcctctcgtgaccaaagagatttttgggccattccaggttgtgactgagtacaaagataatcagcttccactggtcctcgatgcccttgaaaagatgcatgcacattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99805" stop="97939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99503" g_stop="99372" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="140" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99371" i_stop="99276" i_length="96">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99275" g_stop="99186" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="230" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99185" i_stop="99030" i_length="156">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99029" g_stop="98940" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="320" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98939" i_stop="98602" i_length="338">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98601" g_stop="98392" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="530" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98391" i_stop="98311" i_length="81">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98310" g_stop="98239" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="602" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E341354" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99503" e_stop="99372"/>
          <exon e_start="99275" e_stop="99186"/>
          <exon e_start="99029" e_stop="98940"/>
          <exon e_start="98601" e_stop="98392"/>
          <exon e_start="98310" e_stop="98239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAACCACGCATGACTCTCTTCACAGGTAGCTCAAGGGTGGCAGAGAAGTTAGCTGATGACCTAAGCGGTCGAGTCAAACTAGAAGATGCTGGATTCGACTGGAAGATCCTTGGGCCCGATGTCAATGAGGTTTACATAATCTGTTATCGACAGAGTTTGTTGCATTTTGGAAAGGCTTTTTTAAAGATTTTTTATTTACTTATTGTGATTGTTGGCTTTTGACAGGTGGATTACGTTGCATGGGTTTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCAGCTGAATCAATATTGTTCATGCATGAGGTGTGCTTAGTCCTTCTATTTTCTTCATGGAAGTTAAATGTTTTGAGATACAAAATCTATGTGGTTTATATAAGTTTTGGAAAAAGTAATGTAATATGGTTTCATTGAATTTCGTTCAAAGAACTCTCTTTTCTAACCATTTTTATTTTGGTGCAGAATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACGGTAAGAATACCTAATGCTAATGTTAATTTGGAGATTCTGTGTCCATCATTTGATACAATTTACTAGAAGTTTGAAAGTATCGATACGTTGAATTTGAATCTATTTTGGATAGTCTTTTTGATGTTCAGAATATTATTCACTCAAACAAGTGCAGAAATCTGGGACTTTGTGTGATATAAACAGAATATTTATAATAAAGGAGGAGCTCACCTTTTGTTAACATGATTTATCCGTTATTTTCTTTCTTGAATTACGCATTCTTTGTAGTACATTGTCAAGTAATGCCAACAATCTTGTCAGAAATACCTGGCGATAATTGTTATGTCTTGCTCCTGCAGGTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAGGTAATTGAATATTCTGAATTAAATGTCAAGTTGGGTAATTTTCTCGCTGATTCATCAAATCTTGCTGTTTTTTTCCCCTAGGTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTA</genome_strand>
        <mrna_strand>GCAAAACCACGCATGACTCTCTTCACAGGTAGCTCAAGGGTGGCAGAGAAGTTAGCTGATGACCTAAGCGGTCGAGTCAAACTAGAAGATGCTGGATTCGACTGGAAGATCCTTGGGCCCGATGTCAATGAG................................................................................................GTGGATTACGTTGCATGGGTTTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCAGCTGAATCAATATTGTTCATGCATGAG............................................................................................................................................................AATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACG..................................................................................................................................................................................................................................................................................................................................................GTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAG.................................................................................GTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307061" ref_strand="+" ref_description="SGN-E307061 [cLEY-15-E10]">
      <seq>aaactagattatgctggattttactggaagatccttgggccctatgtcagtgatgttgattacgttgcatgggtttctgaccaagatgcatatgcatgtagtggtcagaagtgttcagctgaatcaatattgttcatgcatgagaattggagtaaaagttctctcttagacaaaatgaccgagcttgctgcaagaagaaagttagatgatttaactattggtcctgtccttacggttacaactgaaacaatgctggaccatgcgaagaaattacttcagatacctggatcgagattgctctttggtggtgaagccttacataaccattcgatcccaaaaatttatggagccattaagcccactgctatttttgtacctcttgaagaaatactcaaagatgaacattatcctctcgtgaccaaagagatgtttgggccattccaggttgtgactgagtacaaagatcatcagcttccactggtcctcgatgcccttgaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99725" stop="97954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99425" g_stop="99372" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.870"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99371" i_stop="99276" i_length="96">
            <donor d_prob="0.983" d_score="0.86"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99275" g_stop="99186" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="144" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99185" i_stop="99030" i_length="156">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99029" g_stop="98940" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="234" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98939" i_stop="98602" i_length="338">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98601" g_stop="98392" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="444" r_length="210" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98391" i_stop="98311" i_length="81">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98310" g_stop="98254" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="501" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E307061" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99425" e_stop="99372"/>
          <exon e_start="99275" e_stop="99186"/>
          <exon e_start="99029" e_stop="98940"/>
          <exon e_start="98601" e_stop="98392"/>
          <exon e_start="98310" e_stop="98254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTAGAAGATGCTGGATTCGACTGGAAGATCCTTGGGCCCGATGTCAATGAGGTTTACATAATCTGTTATCGACAGAGTTTGTTGCATTTTGGAAAGGCTTTTTTAAAGATTTTTTATTTACTTATTGTGATTGTTGGCTTTTGACAGGTGGATTACGTTGCATGGGTTTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCAGCTGAATCAATATTGTTCATGCATGAGGTGTGCTTAGTCCTTCTATTTTCTTCATGGAAGTTAAATGTTTTGAGATACAAAATCTATGTGGTTTATATAAGTTTTGGAAAAAGTAATGTAATATGGTTTCATTGAATTTCGTTCAAAGAACTCTCTTTTCTAACCATTTTTATTTTGGTGCAGAATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACGGTAAGAATACCTAATGCTAATGTTAATTTGGAGATTCTGTGTCCATCATTTGATACAATTTACTAGAAGTTTGAAAGTATCGATACGTTGAATTTGAATCTATTTTGGATAGTCTTTTTGATGTTCAGAATATTATTCACTCAAACAAGTGCAGAAATCTGGGACTTTGTGTGATATAAACAGAATATTTATAATAAAGGAGGAGCTCACCTTTTGTTAACATGATTTATCCGTTATTTTCTTTCTTGAATTACGCATTCTTTGTAGTACATTGTCAAGTAATGCCAACAATCTTGTCAGAAATACCTGGCGATAATTGTTATGTCTTGCTCCTGCAGGTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAGGTAATTGAATATTCTGAATTAAATGTCAAGTTGGGTAATTTTCTCGCTGATTCATCAAATCTTGCTGTTTTTTTCCCCTAGGTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAG</genome_strand>
        <mrna_strand>AAACTAGATTATGCTGGATTTTACTGGAAGATCCTTGGGCCCTATGTCAGTGAT................................................................................................GTTGATTACGTTGCATGGGTTTCTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCAGCTGAATCAATATTGTTCATGCATGAG............................................................................................................................................................AATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACG..................................................................................................................................................................................................................................................................................................................................................GTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACATAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATGTTTGGGCCATTCCAG.................................................................................GTTGTGACTGAGTACAAAGATCATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255133" ref_strand="+" ref_description="SGN-E255133 [cLEG-31-P24]">
      <seq>tcatgcatgagaattggagtaaaagttctctcttagacaaaatgaccgatcttgctgcaagaagaaagttagatgatttaactattggtcctgtccttacggttacaactgaaacaatgctggaccatgcgaagaaattacttcagatacctggatcgagattgctctttggtgggtngnaaaaaagccttacagaaccattcnatcccaaaaatttatggagccattaagcccactgctatttttgtacctcttgaagaaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99334" stop="98144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99196" g_stop="99186" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99185" i_stop="99030" i_length="156">
            <donor d_prob="0.824" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99029" g_stop="98940" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="101" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98939" i_stop="98602" i_length="338">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98601" g_stop="98444" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="266" r_length="165" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E255133" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>259</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99196" e_stop="99186"/>
          <exon e_start="99029" e_stop="98940"/>
          <exon e_start="98601" e_stop="98444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGCATGAGGTGTGCTTAGTCCTTCTATTTTCTTCATGGAAGTTAAATGTTTTGAGATACAAAATCTATGTGGTTTATATAAGTTTTGGAAAAAGTAATGTAATATGGTTTCATTGAATTTCGTTCAAAGAACTCTCTTTTCTAACCATTTTTATTTTGGTGCAGAATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACGGTAAGAATACCTAATGCTAATGTTAATTTGGAGATTCTGTGTCCATCATTTGATACAATTTACTAGAAGTTTGAAAGTATCGATACGTTGAATTTGAATCTATTTTGGATAGTCTTTTTGATGTTCAGAATATTATTCACTCAAACAAGTGCAGAAATCTGGGACTTTGTGTGATATAAACAGAATATTTATAATAAAGGAGGAGCTCACCTTTTGTTAACATGATTTATCCGTTATTTTCTTTCTTGAATTACGCATTCTTTGTAGTACATTGTCAAGTAATGCCAACAATCTTGTCAGAAATACCTGGCGATAATTGTTATGTCTTGCTCCTGCAGGTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGT-GGT-G-----AAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACT</genome_strand>
        <mrna_strand>TCATGCATGAG............................................................................................................................................................AATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGATCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACG..................................................................................................................................................................................................................................................................................................................................................GTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGGTNGNAAAAAAGCCTTACAGAACCATTCNATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275750" ref_strand="+" ref_description="SGN-E275750 [cLEN-18-E19]">
      <seq>ttgcttcagctgatgggagcgttgtatatgggaaataagccagtacttaaagttgatagcaaggtatgcattgttatggaacaaatgcttcgactacttcatgagtgtgggttacctgtggatgatgtggatttcataaactcagatggaaagacaatgaacaagctactcgtggaggcaaaaccacgcatgactctcttcacaggtagctcaagggtggcagagaagttagctgatgacctaagcggtcgagtcaaactagaagatgctggattcgactggaagatccttgggcccgatgtcaatgaggtggattacgttgcatgggtttgtgaccaagatgcatatgcatgtagtggtcagaagtgttcagctgaatcaatattgttcatgcatgagaattggagtaaaagttctctcttagacaaaatgaccgagcttgctgcaagaagaaagttagatgatttaactattggtcctgtccttacggttacaactgaaacaatgctggaccatgcgaagaaattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100587" stop="98262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100287" g_stop="100225" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100224" i_stop="99958" i_length="267">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.633" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99957" g_stop="99844" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="177" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99843" i_stop="99504" i_length="340">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99503" g_stop="99372" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="309" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99371" i_stop="99276" i_length="96">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99275" g_stop="99186" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="399" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99185" i_stop="99030" i_length="156">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99029" g_stop="98940" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="489" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98939" i_stop="98602" i_length="338">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98601" g_stop="98562" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="529" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E275750" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100287" e_stop="100225"/>
          <exon e_start="99957" e_stop="99844"/>
          <exon e_start="99503" e_stop="99372"/>
          <exon e_start="99275" e_stop="99186"/>
          <exon e_start="99029" e_stop="98940"/>
          <exon e_start="98601" e_stop="98562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTTCAGCTGATGGGAGCGTTGTATATGGGAAATAAGCCAGTACTTAAAGTTGATAGCAAGGTAAGGTTGTGCAAATTTTTGTAGACTCTTTCACGTGCAAAATTACTTATCGGACAAGGTCCAGCTTAGAAACAAACTTGTCTATCATATATCAAAGAAGAAAAATTTGCTATTGATTTTTACAAACTCCTTACTTTTTTTGTCAAATTAACAAAATGTGCAGATAATTGGAAGATTTTGTTCCTAGTTTAGTTTATTTTTTCCTGTTAATAACTCTAAATATTTTTCCAGTGTGGTTTTTATAATTCGACCTGCATTGTTGGTTAGGTATGCATTGTTATGGAACAAATGCTTCGACTACTTCATGAGTGTGGGTTACCTGTGGATGATGTGGATTTCATAAACTCAGATGGAAAGACAATGAACAAGCTACTCGTGGAGGTTAATTTCTAAAACTAGACTCCTTTGGCCACTTATGAACAAGAATTGGCAACTGAAAATTACAAATTTTAGTCCAAAAACTTCCCATCCTATTAAAATTTTGTTGTCCTCATGTTATGTGCAAATAACCTTCACTTCAACCATGTTAAACTAATTCAGGAATCCCAAGAATAATTTAATCTATTTTCTTTGTTGAATTGTTGGCTTTTCGCACTAATATGGAGTAATTAACTTTCTAGAGTCTATAATAATTGTCGGATTCTTTCTAACCAACTTTTCCAACTACTAAAGATAATATTCCTATTTCCTGACATAGTTCTCTTTCGTATTGTGTCGTTAGGCAAAACCACGCATGACTCTCTTCACAGGTAGCTCAAGGGTGGCAGAGAAGTTAGCTGATGACCTAAGCGGTCGAGTCAAACTAGAAGATGCTGGATTCGACTGGAAGATCCTTGGGCCCGATGTCAATGAGGTTTACATAATCTGTTATCGACAGAGTTTGTTGCATTTTGGAAAGGCTTTTTTAAAGATTTTTTATTTACTTATTGTGATTGTTGGCTTTTGACAGGTGGATTACGTTGCATGGGTTTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCAGCTGAATCAATATTGTTCATGCATGAGGTGTGCTTAGTCCTTCTATTTTCTTCATGGAAGTTAAATGTTTTGAGATACAAAATCTATGTGGTTTATATAAGTTTTGGAAAAAGTAATGTAATATGGTTTCATTGAATTTCGTTCAAAGAACTCTCTTTTCTAACCATTTTTATTTTGGTGCAGAATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACGGTAAGAATACCTAATGCTAATGTTAATTTGGAGATTCTGTGTCCATCATTTGATACAATTTACTAGAAGTTTGAAAGTATCGATACGTTGAATTTGAATCTATTTTGGATAGTCTTTTTGATGTTCAGAATATTATTCACTCAAACAAGTGCAGAAATCTGGGACTTTGTGTGATATAAACAGAATATTTATAATAAAGGAGGAGCTCACCTTTTGTTAACATGATTTATCCGTTATTTTCTTTCTTGAATTACGCATTCTTTGTAGTACATTGTCAAGTAATGCCAACAATCTTGTCAGAAATACCTGGCGATAATTGTTATGTCTTGCTCCTGCAGGTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTAC</genome_strand>
        <mrna_strand>TTGCTTCAGCTGATGGGAGCGTTGTATATGGGAAATAAGCCAGTACTTAAAGTTGATAGCAAG...........................................................................................................................................................................................................................................................................GTATGCATTGTTATGGAACAAATGCTTCGACTACTTCATGAGTGTGGGTTACCTGTGGATGATGTGGATTTCATAAACTCAGATGGAAAGACAATGAACAAGCTACTCGTGGAG....................................................................................................................................................................................................................................................................................................................................................GCAAAACCACGCATGACTCTCTTCACAGGTAGCTCAAGGGTGGCAGAGAAGTTAGCTGATGACCTAAGCGGTCGAGTCAAACTAGAAGATGCTGGATTCGACTGGAAGATCCTTGGGCCCGATGTCAATGAG................................................................................................GTGGATTACGTTGCATGGGTTTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCAGCTGAATCAATATTGTTCATGCATGAG............................................................................................................................................................AATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACG..................................................................................................................................................................................................................................................................................................................................................GTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370253" ref_strand="+" ref_description="SGN-E370253 [TUS-28-K20]">
      <seq>gttgaagttctcgtgacgcagaaatttctggaaaatttctgtggtgatcaggttcgctttctagctagatcttttgcagtaccaggaaatcatctggggcagcagagccatggtttccgatggccttatggacctgtagcggttattgctccctttaattttcctttggagattcctttgcttcagctgatgggagcgttgtatatgggaaataagccagtacttaaagttgatagcaaggtatgcattgttatggaacaaatgcttcgactacttcatgagtgtgggttacctgtggatgatgtggatttcataaactcagatggaaagacaatgaacaagctactcgtggaggcaaaaccacgcatgactctcttcacaggtagctcaagggtggcagagaagttagctgatgacctaagcggtcgagtcaaactagaagatgctggattcgactggaagatccttgggcccgatgtcaatgaggtggattacgttgcatgggtttgtgaccaagatgcatatgcatgtagtggtcagaagtgttcagctgaatcaatattgttcatgcatgagaattggagtaaaagttctctcttagacaaaatgaccgagcttgctgcaagaagaaagttagatgatttaactattggtcctgtccttacggttacaacttgaacaatgctggaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="101459" stop="98275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101159" g_stop="101109" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101108" i_stop="100754" i_length="355">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100753" g_stop="100670" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="135" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100669" i_stop="100330" i_length="340">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100329" g_stop="100225" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="240" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100224" i_stop="99958" i_length="267">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.633" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99957" g_stop="99844" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="354" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99843" i_stop="99504" i_length="340">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99503" g_stop="99372" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="486" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99371" i_stop="99276" i_length="96">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99275" g_stop="99186" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="576" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99185" i_stop="99030" i_length="156">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="99029" g_stop="98940" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="666" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98939" i_stop="98602" i_length="338">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98601" g_stop="98575" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="693" r_length="27" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E370253" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101159" e_stop="101109"/>
          <exon e_start="100753" e_stop="100670"/>
          <exon e_start="100329" e_stop="100225"/>
          <exon e_start="99957" e_stop="99844"/>
          <exon e_start="99503" e_stop="99372"/>
          <exon e_start="99275" e_stop="99186"/>
          <exon e_start="99029" e_stop="98940"/>
          <exon e_start="98601" e_stop="98575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAAGTTCTCGTGACGCAGAAATTTCTGGAAAATTTCTGTGGTGATCAGGTAGATTCTAAAACTATTACCTTGTATGTTCAACGTTATACAGGGACTAGCTAAGAAAAAGATGTGTTTTAAATCGTGGCGCAACAATTCAGCAGCATAGCTTTCACATCCATGTGATTTTTTTGCTGCTTTATTTTATTTCAACAATTTTGTGTCTACTGATTGGTTGTTTCTTTTTTCCTTTTGCTGTTCTGTTAACTGTTAGTAGCTTTTTTGACACTGAAATATTTGAAAGCTTAATAGGTTTCAGTTTCAGGAACAAGGACTTATTTCACACGGGAATCATTTCTCCATTTTCTTTAACATGATACATGACTGTCCGATCCAATGCTGAACTCTTGATTTTATTTGGCAGGTTCGCTTTCTAGCTAGATCTTTTGCAGTACCAGGAAATCATCTGGGGCAGCAGAGCCATGGTTTCCGATGGCCTTATGGACCTGTAAGGCACCGTTCTTTCCGTTGTTGACTATATTTAATGGAACATGTTAACAAAAAAGTCCTATGATACAATCTTTCACGTTGAAACTGAGATCTGAAGGTTTAGTTATGTAACTAAAATCACTTAGCTTCGGGGGAAACAAATTCTTCACAATTTCAGAATGGTGTTAAGTTGTGTTATACATTGCTTTTGGCCATAGTGCTCAAAGTGGTAAATTAACAGAACATAATTTGTTTCTTACGTTTTCCTGTTGTGACTTCCTTATGCGATTGAATGATATTTTTTATTTCAATTATTAAAATTTCTCACACTACCCAATTTTTAACTTTATATTTCATAGGTAGCGGTTATTGCTCCCTTTAATTTTCCTTTGGAGATTCCTTTGCTTCAGCTGATGGGAGCGTTGTATATGGGAAATAAGCCAGTACTTAAAGTTGATAGCAAGGTAAGGTTGTGCAAATTTTTGTAGACTCTTTCACGTGCAAAATTACTTATCGGACAAGGTCCAGCTTAGAAACAAACTTGTCTATCATATATCAAAGAAGAAAAATTTGCTATTGATTTTTACAAACTCCTTACTTTTTTTGTCAAATTAACAAAATGTGCAGATAATTGGAAGATTTTGTTCCTAGTTTAGTTTATTTTTTCCTGTTAATAACTCTAAATATTTTTCCAGTGTGGTTTTTATAATTCGACCTGCATTGTTGGTTAGGTATGCATTGTTATGGAACAAATGCTTCGACTACTTCATGAGTGTGGGTTACCTGTGGATGATGTGGATTTCATAAACTCAGATGGAAAGACAATGAACAAGCTACTCGTGGAGGTTAATTTCTAAAACTAGACTCCTTTGGCCACTTATGAACAAGAATTGGCAACTGAAAATTACAAATTTTAGTCCAAAAACTTCCCATCCTATTAAAATTTTGTTGTCCTCATGTTATGTGCAAATAACCTTCACTTCAACCATGTTAAACTAATTCAGGAATCCCAAGAATAATTTAATCTATTTTCTTTGTTGAATTGTTGGCTTTTCGCACTAATATGGAGTAATTAACTTTCTAGAGTCTATAATAATTGTCGGATTCTTTCTAACCAACTTTTCCAACTACTAAAGATAATATTCCTATTTCCTGACATAGTTCTCTTTCGTATTGTGTCGTTAGGCAAAACCACGCATGACTCTCTTCACAGGTAGCTCAAGGGTGGCAGAGAAGTTAGCTGATGACCTAAGCGGTCGAGTCAAACTAGAAGATGCTGGATTCGACTGGAAGATCCTTGGGCCCGATGTCAATGAGGTTTACATAATCTGTTATCGACAGAGTTTGTTGCATTTTGGAAAGGCTTTTTTAAAGATTTTTTATTTACTTATTGTGATTGTTGGCTTTTGACAGGTGGATTACGTTGCATGGGTTTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCAGCTGAATCAATATTGTTCATGCATGAGGTGTGCTTAGTCCTTCTATTTTCTTCATGGAAGTTAAATGTTTTGAGATACAAAATCTATGTGGTTTATATAAGTTTTGGAAAAAGTAATGTAATATGGTTTCATTGAATTTCGTTCAAAGAACTCTCTTTTCTAACCATTTTTATTTTGGTGCAGAATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACGGTAAGAATACCTAATGCTAATGTTAATTTGGAGATTCTGTGTCCATCATTTGATACAATTTACTAGAAGTTTGAAAGTATCGATACGTTGAATTTGAATCTATTTTGGATAGTCTTTTTGATGTTCAGAATATTATTCACTCAAACAAGTGCAGAAATCTGGGACTTTGTGTGATATAAACAGAATATTTATAATAAAGGAGGAGCTCACCTTTTGTTAACATGATTTATCCGTTATTTTCTTTCTTGAATTACGCATTCTTTGTAGTACATTGTCAAGTAATGCCAACAATCTTGTCAGAAATACCTGGCGATAATTGTTATGTCTTGCTCCTGCAGGTTACAACTGAAACAATGCTGGACCAT</genome_strand>
        <mrna_strand>GTTGAAGTTCTCGTGACGCAGAAATTTCTGGAAAATTTCTGTGGTGATCAG...................................................................................................................................................................................................................................................................................................................................................................GTTCGCTTTCTAGCTAGATCTTTTGCAGTACCAGGAAATCATCTGGGGCAGCAGAGCCATGGTTTCCGATGGCCTTATGGACCT....................................................................................................................................................................................................................................................................................................................................................GTAGCGGTTATTGCTCCCTTTAATTTTCCTTTGGAGATTCCTTTGCTTCAGCTGATGGGAGCGTTGTATATGGGAAATAAGCCAGTACTTAAAGTTGATAGCAAG...........................................................................................................................................................................................................................................................................GTATGCATTGTTATGGAACAAATGCTTCGACTACTTCATGAGTGTGGGTTACCTGTGGATGATGTGGATTTCATAAACTCAGATGGAAAGACAATGAACAAGCTACTCGTGGAG....................................................................................................................................................................................................................................................................................................................................................GCAAAACCACGCATGACTCTCTTCACAGGTAGCTCAAGGGTGGCAGAGAAGTTAGCTGATGACCTAAGCGGTCGAGTCAAACTAGAAGATGCTGGATTCGACTGGAAGATCCTTGGGCCCGATGTCAATGAG................................................................................................GTGGATTACGTTGCATGGGTTTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCAGCTGAATCAATATTGTTCATGCATGAG............................................................................................................................................................AATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACG..................................................................................................................................................................................................................................................................................................................................................GTTACAACTTGAACAATGCTGGACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337919" ref_strand="+" ref_description="SGN-E337919 [cTOE-14-F14]">
      <seq>cctttaattttcctttggagattcctttgcttcagctgatgggagcgttgtatatgggaaataagccagtacttaaagttgatagcaaggtatgcattgttatggaacaaatgcttcgactacttcatgagtgtgggttacctgtggatgatgtggatttcataaactcagatggaaagacaatgaacaagctactcgtggaggcaaaaccacgcatgactctcttcacaggtagctcaagggtggcagagaagttagctgatgacctaagcggtcgagtcaaactagaagatgctggattcgactggaagatccttgggcccgatgtcaatgaggtggattacgttgcatgggtttgtgaccaagatgcatatgcatgtagtggtcagaagtgttcagctgaatcaatattgttcatgcatgagaattggagtaaaagttctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100613" stop="98709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100313" g_stop="100225" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100224" i_stop="99958" i_length="267">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.633" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99957" g_stop="99844" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="203" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99843" i_stop="99504" i_length="340">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99503" g_stop="99372" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="335" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99371" i_stop="99276" i_length="96">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99275" g_stop="99186" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="425" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99185" i_stop="99030" i_length="156">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99029" g_stop="99009" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="446" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E337919" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100313" e_stop="100225"/>
          <exon e_start="99957" e_stop="99844"/>
          <exon e_start="99503" e_stop="99372"/>
          <exon e_start="99275" e_stop="99186"/>
          <exon e_start="99029" e_stop="99009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTAATTTTCCTTTGGAGATTCCTTTGCTTCAGCTGATGGGAGCGTTGTATATGGGAAATAAGCCAGTACTTAAAGTTGATAGCAAGGTAAGGTTGTGCAAATTTTTGTAGACTCTTTCACGTGCAAAATTACTTATCGGACAAGGTCCAGCTTAGAAACAAACTTGTCTATCATATATCAAAGAAGAAAAATTTGCTATTGATTTTTACAAACTCCTTACTTTTTTTGTCAAATTAACAAAATGTGCAGATAATTGGAAGATTTTGTTCCTAGTTTAGTTTATTTTTTCCTGTTAATAACTCTAAATATTTTTCCAGTGTGGTTTTTATAATTCGACCTGCATTGTTGGTTAGGTATGCATTGTTATGGAACAAATGCTTCGACTACTTCATGAGTGTGGGTTACCTGTGGATGATGTGGATTTCATAAACTCAGATGGAAAGACAATGAACAAGCTACTCGTGGAGGTTAATTTCTAAAACTAGACTCCTTTGGCCACTTATGAACAAGAATTGGCAACTGAAAATTACAAATTTTAGTCCAAAAACTTCCCATCCTATTAAAATTTTGTTGTCCTCATGTTATGTGCAAATAACCTTCACTTCAACCATGTTAAACTAATTCAGGAATCCCAAGAATAATTTAATCTATTTTCTTTGTTGAATTGTTGGCTTTTCGCACTAATATGGAGTAATTAACTTTCTAGAGTCTATAATAATTGTCGGATTCTTTCTAACCAACTTTTCCAACTACTAAAGATAATATTCCTATTTCCTGACATAGTTCTCTTTCGTATTGTGTCGTTAGGCAAAACCACGCATGACTCTCTTCACAGGTAGCTCAAGGGTGGCAGAGAAGTTAGCTGATGACCTAAGCGGTCGAGTCAAACTAGAAGATGCTGGATTCGACTGGAAGATCCTTGGGCCCGATGTCAATGAGGTTTACATAATCTGTTATCGACAGAGTTTGTTGCATTTTGGAAAGGCTTTTTTAAAGATTTTTTATTTACTTATTGTGATTGTTGGCTTTTGACAGGTGGATTACGTTGCATGGGTTTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCAGCTGAATCAATATTGTTCATGCATGAGGTGTGCTTAGTCCTTCTATTTTCTTCATGGAAGTTAAATGTTTTGAGATACAAAATCTATGTGGTTTATATAAGTTTTGGAAAAAGTAATGTAATATGGTTTCATTGAATTTCGTTCAAAGAACTCTCTTTTCTAACCATTTTTATTTTGGTGCAGAATTGGAGTAAAAGTTCTCTC</genome_strand>
        <mrna_strand>CCTTTAATTTTCCTTTGGAGATTCCTTTGCTTCAGCTGATGGGAGCGTTGTATATGGGAAATAAGCCAGTACTTAAAGTTGATAGCAAG...........................................................................................................................................................................................................................................................................GTATGCATTGTTATGGAACAAATGCTTCGACTACTTCATGAGTGTGGGTTACCTGTGGATGATGTGGATTTCATAAACTCAGATGGAAAGACAATGAACAAGCTACTCGTGGAG....................................................................................................................................................................................................................................................................................................................................................GCAAAACCACGCATGACTCTCTTCACAGGTAGCTCAAGGGTGGCAGAGAAGTTAGCTGATGACCTAAGCGGTCGAGTCAAACTAGAAGATGCTGGATTCGACTGGAAGATCCTTGGGCCCGATGTCAATGAG................................................................................................GTGGATTACGTTGCATGGGTTTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCAGCTGAATCAATATTGTTCATGCATGAG............................................................................................................................................................AATTGGAGTAAAAGTTCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271880" ref_strand="+" ref_description="SGN-E271880 [cLEM-8-D4]">
      <seq>gttgaagttctcgtgacgcagaaatttctggaaaatttctgtggtgatcaggttcgctttctagctagatcttttgcagtaccaggaaatcatctggggcagcagagccatggtttccgatggccttatggacctgtagcggttattgctccctttaattttcctttggagattcctttgcttcagctgatgggagcgttgtatatgggaaataagccagtacttaaagttgatagcaaggtatgcattgttatggaacaaatgcttcgactacttcatgagtgtgggttacctgtggatgatgtggatttcataaactcagatggaaagacaatgaacaagctactcgtggaggcaaaaccacgcatgactctcttcacaggtagctcaagggtggcagagaagttagctgatgacctaagcggtcgagtcaaactagaagatgctggattcgactggaagatccttgggcccgatgtcaatgaggtggattacgttgcatgggtttgtgaccaagatgcatatgcatgtagtggtcagaaatgttcagctgaatcaatattgttcatgcatgagaattggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="101459" stop="98886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101159" g_stop="101109" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101108" i_stop="100754" i_length="355">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100753" g_stop="100670" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="135" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100669" i_stop="100330" i_length="340">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100329" g_stop="100225" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="240" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100224" i_stop="99958" i_length="267">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.633" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99957" g_stop="99844" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="354" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99843" i_stop="99504" i_length="340">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99503" g_stop="99372" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="486" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99371" i_stop="99276" i_length="96">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99275" g_stop="99186" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="576" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99185" i_stop="99030" i_length="156">
            <donor d_prob="0.824" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="99029" g_stop="99022" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="584" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E271880" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101159" e_stop="101109"/>
          <exon e_start="100753" e_stop="100670"/>
          <exon e_start="100329" e_stop="100225"/>
          <exon e_start="99957" e_stop="99844"/>
          <exon e_start="99503" e_stop="99372"/>
          <exon e_start="99275" e_stop="99186"/>
          <exon e_start="99029" e_stop="99022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAAGTTCTCGTGACGCAGAAATTTCTGGAAAATTTCTGTGGTGATCAGGTAGATTCTAAAACTATTACCTTGTATGTTCAACGTTATACAGGGACTAGCTAAGAAAAAGATGTGTTTTAAATCGTGGCGCAACAATTCAGCAGCATAGCTTTCACATCCATGTGATTTTTTTGCTGCTTTATTTTATTTCAACAATTTTGTGTCTACTGATTGGTTGTTTCTTTTTTCCTTTTGCTGTTCTGTTAACTGTTAGTAGCTTTTTTGACACTGAAATATTTGAAAGCTTAATAGGTTTCAGTTTCAGGAACAAGGACTTATTTCACACGGGAATCATTTCTCCATTTTCTTTAACATGATACATGACTGTCCGATCCAATGCTGAACTCTTGATTTTATTTGGCAGGTTCGCTTTCTAGCTAGATCTTTTGCAGTACCAGGAAATCATCTGGGGCAGCAGAGCCATGGTTTCCGATGGCCTTATGGACCTGTAAGGCACCGTTCTTTCCGTTGTTGACTATATTTAATGGAACATGTTAACAAAAAAGTCCTATGATACAATCTTTCACGTTGAAACTGAGATCTGAAGGTTTAGTTATGTAACTAAAATCACTTAGCTTCGGGGGAAACAAATTCTTCACAATTTCAGAATGGTGTTAAGTTGTGTTATACATTGCTTTTGGCCATAGTGCTCAAAGTGGTAAATTAACAGAACATAATTTGTTTCTTACGTTTTCCTGTTGTGACTTCCTTATGCGATTGAATGATATTTTTTATTTCAATTATTAAAATTTCTCACACTACCCAATTTTTAACTTTATATTTCATAGGTAGCGGTTATTGCTCCCTTTAATTTTCCTTTGGAGATTCCTTTGCTTCAGCTGATGGGAGCGTTGTATATGGGAAATAAGCCAGTACTTAAAGTTGATAGCAAGGTAAGGTTGTGCAAATTTTTGTAGACTCTTTCACGTGCAAAATTACTTATCGGACAAGGTCCAGCTTAGAAACAAACTTGTCTATCATATATCAAAGAAGAAAAATTTGCTATTGATTTTTACAAACTCCTTACTTTTTTTGTCAAATTAACAAAATGTGCAGATAATTGGAAGATTTTGTTCCTAGTTTAGTTTATTTTTTCCTGTTAATAACTCTAAATATTTTTCCAGTGTGGTTTTTATAATTCGACCTGCATTGTTGGTTAGGTATGCATTGTTATGGAACAAATGCTTCGACTACTTCATGAGTGTGGGTTACCTGTGGATGATGTGGATTTCATAAACTCAGATGGAAAGACAATGAACAAGCTACTCGTGGAGGTTAATTTCTAAAACTAGACTCCTTTGGCCACTTATGAACAAGAATTGGCAACTGAAAATTACAAATTTTAGTCCAAAAACTTCCCATCCTATTAAAATTTTGTTGTCCTCATGTTATGTGCAAATAACCTTCACTTCAACCATGTTAAACTAATTCAGGAATCCCAAGAATAATTTAATCTATTTTCTTTGTTGAATTGTTGGCTTTTCGCACTAATATGGAGTAATTAACTTTCTAGAGTCTATAATAATTGTCGGATTCTTTCTAACCAACTTTTCCAACTACTAAAGATAATATTCCTATTTCCTGACATAGTTCTCTTTCGTATTGTGTCGTTAGGCAAAACCACGCATGACTCTCTTCACAGGTAGCTCAAGGGTGGCAGAGAAGTTAGCTGATGACCTAAGCGGTCGAGTCAAACTAGAAGATGCTGGATTCGACTGGAAGATCCTTGGGCCCGATGTCAATGAGGTTTACATAATCTGTTATCGACAGAGTTTGTTGCATTTTGGAAAGGCTTTTTTAAAGATTTTTTATTTACTTATTGTGATTGTTGGCTTTTGACAGGTGGATTACGTTGCATGGGTTTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCAGCTGAATCAATATTGTTCATGCATGAGGTGTGCTTAGTCCTTCTATTTTCTTCATGGAAGTTAAATGTTTTGAGATACAAAATCTATGTGGTTTATATAAGTTTTGGAAAAAGTAATGTAATATGGTTTCATTGAATTTCGTTCAAAGAACTCTCTTTTCTAACCATTTTTATTTTGGTGCAGAATTGGAG</genome_strand>
        <mrna_strand>GTTGAAGTTCTCGTGACGCAGAAATTTCTGGAAAATTTCTGTGGTGATCAG...................................................................................................................................................................................................................................................................................................................................................................GTTCGCTTTCTAGCTAGATCTTTTGCAGTACCAGGAAATCATCTGGGGCAGCAGAGCCATGGTTTCCGATGGCCTTATGGACCT....................................................................................................................................................................................................................................................................................................................................................GTAGCGGTTATTGCTCCCTTTAATTTTCCTTTGGAGATTCCTTTGCTTCAGCTGATGGGAGCGTTGTATATGGGAAATAAGCCAGTACTTAAAGTTGATAGCAAG...........................................................................................................................................................................................................................................................................GTATGCATTGTTATGGAACAAATGCTTCGACTACTTCATGAGTGTGGGTTACCTGTGGATGATGTGGATTTCATAAACTCAGATGGAAAGACAATGAACAAGCTACTCGTGGAG....................................................................................................................................................................................................................................................................................................................................................GCAAAACCACGCATGACTCTCTTCACAGGTAGCTCAAGGGTGGCAGAGAAGTTAGCTGATGACCTAAGCGGTCGAGTCAAACTAGAAGATGCTGGATTCGACTGGAAGATCCTTGGGCCCGATGTCAATGAG................................................................................................GTGGATTACGTTGCATGGGTTTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAATGTTCAGCTGAATCAATATTGTTCATGCATGAG............................................................................................................................................................AATTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254023" ref_strand="+" ref_description="SGN-E254023 [cLEG-34-C22]">
      <seq>gcctgaggtttctgatttctttgcgaagctaatacaaagggtgtctcctaagagttaccaacaagctcttgttgaagttctcgtgacgcagaaatttctggaaaatttctgtggtgatcaggttcgctttctagctagatcttttgcagtaccaggaaatcatctggggcagcagagccatggtttccgatggccttatggacctgtagcggttattgctccctttaattttcctttggagattcctttgcttcagctgatgggagcgttgtatatgggaaataagccagtacttaaagttgatagcaaggtatgcattgttatggaacaaatgcttcgactacttcatgagtgtgggttacctgtggatgatgtggatttcataaactcagatggaaagacaatgaacaagctactcgtggaggcaaaaccacgcatgactctcttcacaggtagctcaagggtggcagagaagttagctgatgacctaagcggtcgagtcaaactagaagatgctggattcgactggaagatccttgggcccgatgtcaatgaggtggattacgttgcatgggtttgtgaccaagatgcatatgcatgtagtggtcagaagtgttcaactgaatcaatattgttcatgcatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="101524" stop="98886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101354" g_stop="101348" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101347" i_stop="101223" i_length="125">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101222" g_stop="101109" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="121" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101108" i_stop="100754" i_length="355">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100753" g_stop="100670" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="205" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100669" i_stop="100330" i_length="340">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100329" g_stop="100225" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="310" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100224" i_stop="99958" i_length="267">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.633" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99957" g_stop="99844" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="424" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99843" i_stop="99504" i_length="340">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99503" g_stop="99372" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="556" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99371" i_stop="99276" i_length="96">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="99275" g_stop="99186" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="646" r_length="90" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E254023" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101354" e_stop="101348"/>
          <exon e_start="101222" e_stop="101109"/>
          <exon e_start="100753" e_stop="100670"/>
          <exon e_start="100329" e_stop="100225"/>
          <exon e_start="99957" e_stop="99844"/>
          <exon e_start="99503" e_stop="99372"/>
          <exon e_start="99275" e_stop="99186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTGAGGTAATATATATTCAAGCAAGGATGCTGATGTTCTCGAAACCTTTTTGACTAACAGTTTATGATATGCATAATTAATTCTTATCATCTTAATGTTTTTCTTCTCTTTTTCTTTTTGGGTCTTACAGGTTTCTGATTTCTTTGCGAAGCTAATACAAAGGGTGTCTCCTAAGAGTTACCAACAAGCTCTTGTTGAAGTTCTCGTGACGCAGAAATTTCTGGAAAATTTCTGTGGTGATCAGGTAGATTCTAAAACTATTACCTTGTATGTTCAACGTTATACAGGGACTAGCTAAGAAAAAGATGTGTTTTAAATCGTGGCGCAACAATTCAGCAGCATAGCTTTCACATCCATGTGATTTTTTTGCTGCTTTATTTTATTTCAACAATTTTGTGTCTACTGATTGGTTGTTTCTTTTTTCCTTTTGCTGTTCTGTTAACTGTTAGTAGCTTTTTTGACACTGAAATATTTGAAAGCTTAATAGGTTTCAGTTTCAGGAACAAGGACTTATTTCACACGGGAATCATTTCTCCATTTTCTTTAACATGATACATGACTGTCCGATCCAATGCTGAACTCTTGATTTTATTTGGCAGGTTCGCTTTCTAGCTAGATCTTTTGCAGTACCAGGAAATCATCTGGGGCAGCAGAGCCATGGTTTCCGATGGCCTTATGGACCTGTAAGGCACCGTTCTTTCCGTTGTTGACTATATTTAATGGAACATGTTAACAAAAAAGTCCTATGATACAATCTTTCACGTTGAAACTGAGATCTGAAGGTTTAGTTATGTAACTAAAATCACTTAGCTTCGGGGGAAACAAATTCTTCACAATTTCAGAATGGTGTTAAGTTGTGTTATACATTGCTTTTGGCCATAGTGCTCAAAGTGGTAAATTAACAGAACATAATTTGTTTCTTACGTTTTCCTGTTGTGACTTCCTTATGCGATTGAATGATATTTTTTATTTCAATTATTAAAATTTCTCACACTACCCAATTTTTAACTTTATATTTCATAGGTAGCGGTTATTGCTCCCTTTAATTTTCCTTTGGAGATTCCTTTGCTTCAGCTGATGGGAGCGTTGTATATGGGAAATAAGCCAGTACTTAAAGTTGATAGCAAGGTAAGGTTGTGCAAATTTTTGTAGACTCTTTCACGTGCAAAATTACTTATCGGACAAGGTCCAGCTTAGAAACAAACTTGTCTATCATATATCAAAGAAGAAAAATTTGCTATTGATTTTTACAAACTCCTTACTTTTTTTGTCAAATTAACAAAATGTGCAGATAATTGGAAGATTTTGTTCCTAGTTTAGTTTATTTTTTCCTGTTAATAACTCTAAATATTTTTCCAGTGTGGTTTTTATAATTCGACCTGCATTGTTGGTTAGGTATGCATTGTTATGGAACAAATGCTTCGACTACTTCATGAGTGTGGGTTACCTGTGGATGATGTGGATTTCATAAACTCAGATGGAAAGACAATGAACAAGCTACTCGTGGAGGTTAATTTCTAAAACTAGACTCCTTTGGCCACTTATGAACAAGAATTGGCAACTGAAAATTACAAATTTTAGTCCAAAAACTTCCCATCCTATTAAAATTTTGTTGTCCTCATGTTATGTGCAAATAACCTTCACTTCAACCATGTTAAACTAATTCAGGAATCCCAAGAATAATTTAATCTATTTTCTTTGTTGAATTGTTGGCTTTTCGCACTAATATGGAGTAATTAACTTTCTAGAGTCTATAATAATTGTCGGATTCTTTCTAACCAACTTTTCCAACTACTAAAGATAATATTCCTATTTCCTGACATAGTTCTCTTTCGTATTGTGTCGTTAGGCAAAACCACGCATGACTCTCTTCACAGGTAGCTCAAGGGTGGCAGAGAAGTTAGCTGATGACCTAAGCGGTCGAGTCAAACTAGAAGATGCTGGATTCGACTGGAAGATCCTTGGGCCCGATGTCAATGAGGTTTACATAATCTGTTATCGACAGAGTTTGTTGCATTTTGGAAAGGCTTTTTTAAAGATTTTTTATTTACTTATTGTGATTGTTGGCTTTTGACAGGTGGATTACGTTGCATGGGTTTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCAGCTGAATCAATATTGTTCATGCATGAG</genome_strand>
        <mrna_strand>GCCTGAG.............................................................................................................................GTTTCTGATTTCTTTGCGAAGCTAATACAAAGGGTGTCTCCTAAGAGTTACCAACAAGCTCTTGTTGAAGTTCTCGTGACGCAGAAATTTCTGGAAAATTTCTGTGGTGATCAG...................................................................................................................................................................................................................................................................................................................................................................GTTCGCTTTCTAGCTAGATCTTTTGCAGTACCAGGAAATCATCTGGGGCAGCAGAGCCATGGTTTCCGATGGCCTTATGGACCT....................................................................................................................................................................................................................................................................................................................................................GTAGCGGTTATTGCTCCCTTTAATTTTCCTTTGGAGATTCCTTTGCTTCAGCTGATGGGAGCGTTGTATATGGGAAATAAGCCAGTACTTAAAGTTGATAGCAAG...........................................................................................................................................................................................................................................................................GTATGCATTGTTATGGAACAAATGCTTCGACTACTTCATGAGTGTGGGTTACCTGTGGATGATGTGGATTTCATAAACTCAGATGGAAAGACAATGAACAAGCTACTCGTGGAG....................................................................................................................................................................................................................................................................................................................................................GCAAAACCACGCATGACTCTCTTCACAGGTAGCTCAAGGGTGGCAGAGAAGTTAGCTGATGACCTAAGCGGTCGAGTCAAACTAGAAGATGCTGGATTCGACTGGAAGATCCTTGGGCCCGATGTCAATGAG................................................................................................GTGGATTACGTTGCATGGGTTTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCAACTGAATCAATATTGTTCATGCATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274153" ref_strand="+" ref_description="SGN-E274153 [cLEN-8-K12]">
      <seq>agatcttttgcagtaccaggaaatcatctggggcagcagagccatggtttccgatggccttatggacctgtagcggttattgctccctttaattttcctttggagattcctttgcttcagctgatgggagcgttgtatatgggaaataagccagtacttaaagttgatagcaaggtatgcattgttatggaacaaatgcttcgactacttcatgagtgtgggttacctgtggatgatgtggatttcataaactcagatggaaagacaatgaacaagctactcgtggaggcaaaaccacgcatgactctcttcacaggtagctcaagggtggcagagaagttagctgatgacctaagcggtcgagtcaaactagaagatgctggattcgactggaagatccttgggcccgatgtcaatgaggtggattacgttgcatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="101038" stop="98957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100738" g_stop="100670" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100669" i_stop="100330" i_length="340">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100329" g_stop="100225" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="174" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100224" i_stop="99958" i_length="267">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.633" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99957" g_stop="99844" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="288" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99843" i_stop="99504" i_length="340">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99503" g_stop="99372" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="420" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99371" i_stop="99276" i_length="96">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99275" g_stop="99257" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="439" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E274153" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100738" e_stop="100670"/>
          <exon e_start="100329" e_stop="100225"/>
          <exon e_start="99957" e_stop="99844"/>
          <exon e_start="99503" e_stop="99372"/>
          <exon e_start="99275" e_stop="99257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCTTTTGCAGTACCAGGAAATCATCTGGGGCAGCAGAGCCATGGTTTCCGATGGCCTTATGGACCTGTAAGGCACCGTTCTTTCCGTTGTTGACTATATTTAATGGAACATGTTAACAAAAAAGTCCTATGATACAATCTTTCACGTTGAAACTGAGATCTGAAGGTTTAGTTATGTAACTAAAATCACTTAGCTTCGGGGGAAACAAATTCTTCACAATTTCAGAATGGTGTTAAGTTGTGTTATACATTGCTTTTGGCCATAGTGCTCAAAGTGGTAAATTAACAGAACATAATTTGTTTCTTACGTTTTCCTGTTGTGACTTCCTTATGCGATTGAATGATATTTTTTATTTCAATTATTAAAATTTCTCACACTACCCAATTTTTAACTTTATATTTCATAGGTAGCGGTTATTGCTCCCTTTAATTTTCCTTTGGAGATTCCTTTGCTTCAGCTGATGGGAGCGTTGTATATGGGAAATAAGCCAGTACTTAAAGTTGATAGCAAGGTAAGGTTGTGCAAATTTTTGTAGACTCTTTCACGTGCAAAATTACTTATCGGACAAGGTCCAGCTTAGAAACAAACTTGTCTATCATATATCAAAGAAGAAAAATTTGCTATTGATTTTTACAAACTCCTTACTTTTTTTGTCAAATTAACAAAATGTGCAGATAATTGGAAGATTTTGTTCCTAGTTTAGTTTATTTTTTCCTGTTAATAACTCTAAATATTTTTCCAGTGTGGTTTTTATAATTCGACCTGCATTGTTGGTTAGGTATGCATTGTTATGGAACAAATGCTTCGACTACTTCATGAGTGTGGGTTACCTGTGGATGATGTGGATTTCATAAACTCAGATGGAAAGACAATGAACAAGCTACTCGTGGAGGTTAATTTCTAAAACTAGACTCCTTTGGCCACTTATGAACAAGAATTGGCAACTGAAAATTACAAATTTTAGTCCAAAAACTTCCCATCCTATTAAAATTTTGTTGTCCTCATGTTATGTGCAAATAACCTTCACTTCAACCATGTTAAACTAATTCAGGAATCCCAAGAATAATTTAATCTATTTTCTTTGTTGAATTGTTGGCTTTTCGCACTAATATGGAGTAATTAACTTTCTAGAGTCTATAATAATTGTCGGATTCTTTCTAACCAACTTTTCCAACTACTAAAGATAATATTCCTATTTCCTGACATAGTTCTCTTTCGTATTGTGTCGTTAGGCAAAACCACGCATGACTCTCTTCACAGGTAGCTCAAGGGTGGCAGAGAAGTTAGCTGATGACCTAAGCGGTCGAGTCAAACTAGAAGATGCTGGATTCGACTGGAAGATCCTTGGGCCCGATGTCAATGAGGTTTACATAATCTGTTATCGACAGAGTTTGTTGCATTTTGGAAAGGCTTTTTTAAAGATTTTTTATTTACTTATTGTGATTGTTGGCTTTTGACAGGTGGATTACGTTGCATGGG</genome_strand>
        <mrna_strand>AGATCTTTTGCAGTACCAGGAAATCATCTGGGGCAGCAGAGCCATGGTTTCCGATGGCCTTATGGACCT....................................................................................................................................................................................................................................................................................................................................................GTAGCGGTTATTGCTCCCTTTAATTTTCCTTTGGAGATTCCTTTGCTTCAGCTGATGGGAGCGTTGTATATGGGAAATAAGCCAGTACTTAAAGTTGATAGCAAG...........................................................................................................................................................................................................................................................................GTATGCATTGTTATGGAACAAATGCTTCGACTACTTCATGAGTGTGGGTTACCTGTGGATGATGTGGATTTCATAAACTCAGATGGAAAGACAATGAACAAGCTACTCGTGGAG....................................................................................................................................................................................................................................................................................................................................................GCAAAACCACGCATGACTCTCTTCACAGGTAGCTCAAGGGTGGCAGAGAAGTTAGCTGATGACCTAAGCGGTCGAGTCAAACTAGAAGATGCTGGATTCGACTGGAAGATCCTTGGGCCCGATGTCAATGAG................................................................................................GTGGATTACGTTGCATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700564" ref_strand="+" ref_description="SGN-E700564 [FA13BH10]">
      <seq>gctactgtaaaagctgaagaagtatcaggctctcaacctgctgaagttcacaacttggtgcagggcaagtggacaaaatcttctagttggaatacaatattggatcccttgaatgggcagccgttcattaaagttgcagaagtaaatgaatcagaactgcagccgtttgtggagagcttgtccaagtgcccgaaacatggtctacataatccattcaaagcaccagaaaggtacttaatgttaggagacgtatctacaaaagcagctcatgcgcttggcttgcctgaggtttctgatttctttgcgaagctaatacaaagggtgtctcctaagagttaccaacaagctcttgttgaagttctcgtgacgcagaaatttctggaaaatttctgtggtgatcaggttcgctttctagctagatcttttgcagtaccaggaaatcatctggggcagcagagccatggtttccgatggccttatggacctgtagcggttattgctccctttaattttcctttggagattcctttgcttcagctgatgggagcgttgtatatgggaaataagccagtacttaaagttgatagcaaggtatgcattgttatggaacaaatgcttcgactacttcatgagtgtgggttacctgtggatgatgtggatttcataaactcagatggaaagacaatgaacaagctactcgtggaggcaaaacccacgcatgactctcttcacaggtagctcaaggggtggcagagaagttagctgatgacctaagcggtcgagtcaaactaagaagatgctggattcgactggaagatccttgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102597" stop="99086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102297" g_stop="102240" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102239" i_stop="101927" i_length="313">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101926" g_stop="101823" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="162" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101822" i_stop="101615" i_length="208">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101614" g_stop="101547" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="230" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101546" i_stop="101406" i_length="141">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101405" g_stop="101348" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="288" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101347" i_stop="101223" i_length="125">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101222" g_stop="101109" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="402" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101108" i_stop="100754" i_length="355">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100753" g_stop="100670" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="486" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="100669" i_stop="100330" i_length="340">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="100329" g_stop="100225" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="591" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="100224" i_stop="99958" i_length="267">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.633" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="99957" g_stop="99844" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="705" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="99843" i_stop="99504" i_length="340">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="99503" g_stop="99386" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="826" r_length="121" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E700564" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102297" e_stop="102240"/>
          <exon e_start="101926" e_stop="101823"/>
          <exon e_start="101614" e_stop="101547"/>
          <exon e_start="101405" e_stop="101348"/>
          <exon e_start="101222" e_stop="101109"/>
          <exon e_start="100753" e_stop="100670"/>
          <exon e_start="100329" e_stop="100225"/>
          <exon e_start="99957" e_stop="99844"/>
          <exon e_start="99503" e_stop="99386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACTGTAAAAGCTGAAGAAGTATCAGGCTCTCAACCTGCTGAAGTTCACAACTTGGGTATGTACATTTACATAACGACTAGCTGCTGAAATTGGTCATTAATATGCAGTTTTCCAACGTTTGCCTAAGAATAGATGTGAGATATACTGTATAGACTTTAGATAATTTTGTAAGTTTGAATGATGTTAAACTCCCTGTATACCATATGCATGTTAGCAATTGATATTGAAGTAATACATCACTTCCGTACACCACTTTTCTTTCGATCAGATTCAAGTGTGTTTCTCCTATAAAAAAGGGAGAAGCTAGCTCTGGTCATTGCTCTAGTTTACTGCTACATCTAGTTGACTAGTGAATTTCATCCATTCAGTGCAGGGCAAGTGGACAAAATCTTCTAGTTGGAATACAATATTGGATCCCTTGAATGGGCAGCCGTTCATTAAAGTTGCAGAAGTAAATGAATCAGAACTGCAGGTATATATAATTTGGATGCATCATAATTCTTTGCACTGTATCTTTCAAGATGAGTCTTTCGACAGTAGAGTCTGTTTATTCTGTACAGTTAACTTGTTACTTTATGACCAACTCTAGTTCAGTCGCATAAAGACTTTTCCCTTCTAGTATGAATTCTTTAACACCAAAGATTGTCATGGTTCTATAAGTCCTATTGCTGGGTGTGCAGCCGTTTGTGGAGAGCTTGTCCAAGTGCCCGAAACATGGTCTACATAATCCATTCAAAGCACCAGAAAGGTATGCTTTTAATGTTTTTGGTCTTTTTCTTGTTTTTTTATGAAGTTGTCTAGATGAGCATTTACTGTCTTATGAATTTTTCTCCAAAGGAAGATATGAGGACTTAAGAAAATTTAATCCGAATGACACCGCTTCTCGCAGGTACTTAATGTTAGGAGACGTATCTACAAAAGCAGCTCATGCGCTTGGCTTGCCTGAGGTAATATATATTCAAGCAAGGATGCTGATGTTCTCGAAACCTTTTTGACTAACAGTTTATGATATGCATAATTAATTCTTATCATCTTAATGTTTTTCTTCTCTTTTTCTTTTTGGGTCTTACAGGTTTCTGATTTCTTTGCGAAGCTAATACAAAGGGTGTCTCCTAAGAGTTACCAACAAGCTCTTGTTGAAGTTCTCGTGACGCAGAAATTTCTGGAAAATTTCTGTGGTGATCAGGTAGATTCTAAAACTATTACCTTGTATGTTCAACGTTATACAGGGACTAGCTAAGAAAAAGATGTGTTTTAAATCGTGGCGCAACAATTCAGCAGCATAGCTTTCACATCCATGTGATTTTTTTGCTGCTTTATTTTATTTCAACAATTTTGTGTCTACTGATTGGTTGTTTCTTTTTTCCTTTTGCTGTTCTGTTAACTGTTAGTAGCTTTTTTGACACTGAAATATTTGAAAGCTTAATAGGTTTCAGTTTCAGGAACAAGGACTTATTTCACACGGGAATCATTTCTCCATTTTCTTTAACATGATACATGACTGTCCGATCCAATGCTGAACTCTTGATTTTATTTGGCAGGTTCGCTTTCTAGCTAGATCTTTTGCAGTACCAGGAAATCATCTGGGGCAGCAGAGCCATGGTTTCCGATGGCCTTATGGACCTGTAAGGCACCGTTCTTTCCGTTGTTGACTATATTTAATGGAACATGTTAACAAAAAAGTCCTATGATACAATCTTTCACGTTGAAACTGAGATCTGAAGGTTTAGTTATGTAACTAAAATCACTTAGCTTCGGGGGAAACAAATTCTTCACAATTTCAGAATGGTGTTAAGTTGTGTTATACATTGCTTTTGGCCATAGTGCTCAAAGTGGTAAATTAACAGAACATAATTTGTTTCTTACGTTTTCCTGTTGTGACTTCCTTATGCGATTGAATGATATTTTTTATTTCAATTATTAAAATTTCTCACACTACCCAATTTTTAACTTTATATTTCATAGGTAGCGGTTATTGCTCCCTTTAATTTTCCTTTGGAGATTCCTTTGCTTCAGCTGATGGGAGCGTTGTATATGGGAAATAAGCCAGTACTTAAAGTTGATAGCAAGGTAAGGTTGTGCAAATTTTTGTAGACTCTTTCACGTGCAAAATTACTTATCGGACAAGGTCCAGCTTAGAAACAAACTTGTCTATCATATATCAAAGAAGAAAAATTTGCTATTGATTTTTACAAACTCCTTACTTTTTTTGTCAAATTAACAAAATGTGCAGATAATTGGAAGATTTTGTTCCTAGTTTAGTTTATTTTTTCCTGTTAATAACTCTAAATATTTTTCCAGTGTGGTTTTTATAATTCGACCTGCATTGTTGGTTAGGTATGCATTGTTATGGAACAAATGCTTCGACTACTTCATGAGTGTGGGTTACCTGTGGATGATGTGGATTTCATAAACTCAGATGGAAAGACAATGAACAAGCTACTCGTGGAGGTTAATTTCTAAAACTAGACTCCTTTGGCCACTTATGAACAAGAATTGGCAACTGAAAATTACAAATTTTAGTCCAAAAACTTCCCATCCTATTAAAATTTTGTTGTCCTCATGTTATGTGCAAATAACCTTCACTTCAACCATGTTAAACTAATTCAGGAATCCCAAGAATAATTTAATCTATTTTCTTTGTTGAATTGTTGGCTTTTCGCACTAATATGGAGTAATTAACTTTCTAGAGTCTATAATAATTGTCGGATTCTTTCTAACCAACTTTTCCAACTACTAAAGATAATATTCCTATTTCCTGACATAGTTCTCTTTCGTATTGTGTCGTTAGGCAAAA-CCACGCATGACTCTCTTCACAGGTAGCTCAAGGG-TGGCAGAGAAGTTAGCTGATGACCTAAGCGGTCGAGTCAAACT-AGAAGATGCTGGATTCGACTGGAAGATCCTTGGGC</genome_strand>
        <mrna_strand>GCTACTGTAAAAGCTGAAGAAGTATCAGGCTCTCAACCTGCTGAAGTTCACAACTTGG.........................................................................................................................................................................................................................................................................................................................TGCAGGGCAAGTGGACAAAATCTTCTAGTTGGAATACAATATTGGATCCCTTGAATGGGCAGCCGTTCATTAAAGTTGCAGAAGTAAATGAATCAGAACTGCAG................................................................................................................................................................................................................CCGTTTGTGGAGAGCTTGTCCAAGTGCCCGAAACATGGTCTACATAATCCATTCAAAGCACCAGAAAG.............................................................................................................................................GTACTTAATGTTAGGAGACGTATCTACAAAAGCAGCTCATGCGCTTGGCTTGCCTGAG.............................................................................................................................GTTTCTGATTTCTTTGCGAAGCTAATACAAAGGGTGTCTCCTAAGAGTTACCAACAAGCTCTTGTTGAAGTTCTCGTGACGCAGAAATTTCTGGAAAATTTCTGTGGTGATCAG...................................................................................................................................................................................................................................................................................................................................................................GTTCGCTTTCTAGCTAGATCTTTTGCAGTACCAGGAAATCATCTGGGGCAGCAGAGCCATGGTTTCCGATGGCCTTATGGACCT....................................................................................................................................................................................................................................................................................................................................................GTAGCGGTTATTGCTCCCTTTAATTTTCCTTTGGAGATTCCTTTGCTTCAGCTGATGGGAGCGTTGTATATGGGAAATAAGCCAGTACTTAAAGTTGATAGCAAG...........................................................................................................................................................................................................................................................................GTATGCATTGTTATGGAACAAATGCTTCGACTACTTCATGAGTGTGGGTTACCTGTGGATGATGTGGATTTCATAAACTCAGATGGAAAGACAATGAACAAGCTACTCGTGGAG....................................................................................................................................................................................................................................................................................................................................................GCAAAACCCACGCATGACTCTCTTCACAGGTAGCTCAAGGGGTGGCAGAGAAGTTAGCTGATGACCTAAGCGGTCGAGTCAAACTAAGAAGATGCTGGATTCGACTGGAAGATCCTTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209268" ref_strand="+" ref_description="SGN-E209268 [cLEC-53-K14]">
      <seq>tttctttgcgaagctaatacaaagggtgtctcctaagagttaccaacaagctcttgttgaagttctcgtgacgcagaaatttctggaaaatttctgtggtgatcaggttcgctttctagctagatcttttgcagtaccaggaaatcatctggggcagcagagccatggtttccgatggccttatggacctgtagcggttattgctccctttaattttcctttggagattcctttgcttcagctgatgggagcgttgtatatgggaaataagccagtacttaaagttgatagcaaggtatgcattgttatggaacaaatgcttcgactacttcatgagtgtgggttacctgtggatgatgtggatttcataaactcagatggaaagacaatgaacaagctactcgtggaggcaaaaccacgcatgactctcttcacaggtagctcaagggtggcagagaagttagctgatgacctaagcggtcgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="101514" stop="99127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101214" g_stop="101109" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101108" i_stop="100754" i_length="355">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100753" g_stop="100670" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="190" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100669" i_stop="100330" i_length="340">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100329" g_stop="100225" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="295" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100224" i_stop="99958" i_length="267">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.633" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99957" g_stop="99844" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="409" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99843" i_stop="99504" i_length="340">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99503" g_stop="99427" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="486" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E209268" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101214" e_stop="101109"/>
          <exon e_start="100753" e_stop="100670"/>
          <exon e_start="100329" e_stop="100225"/>
          <exon e_start="99957" e_stop="99844"/>
          <exon e_start="99503" e_stop="99427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTGCGAAGCTAATACAAAGGGTGTCTCCTAAGAGTTACCAACAAGCTCTTGTTGAAGTTCTCGTGACGCAGAAATTTCTGGAAAATTTCTGTGGTGATCAGGTAGATTCTAAAACTATTACCTTGTATGTTCAACGTTATACAGGGACTAGCTAAGAAAAAGATGTGTTTTAAATCGTGGCGCAACAATTCAGCAGCATAGCTTTCACATCCATGTGATTTTTTTGCTGCTTTATTTTATTTCAACAATTTTGTGTCTACTGATTGGTTGTTTCTTTTTTCCTTTTGCTGTTCTGTTAACTGTTAGTAGCTTTTTTGACACTGAAATATTTGAAAGCTTAATAGGTTTCAGTTTCAGGAACAAGGACTTATTTCACACGGGAATCATTTCTCCATTTTCTTTAACATGATACATGACTGTCCGATCCAATGCTGAACTCTTGATTTTATTTGGCAGGTTCGCTTTCTAGCTAGATCTTTTGCAGTACCAGGAAATCATCTGGGGCAGCAGAGCCATGGTTTCCGATGGCCTTATGGACCTGTAAGGCACCGTTCTTTCCGTTGTTGACTATATTTAATGGAACATGTTAACAAAAAAGTCCTATGATACAATCTTTCACGTTGAAACTGAGATCTGAAGGTTTAGTTATGTAACTAAAATCACTTAGCTTCGGGGGAAACAAATTCTTCACAATTTCAGAATGGTGTTAAGTTGTGTTATACATTGCTTTTGGCCATAGTGCTCAAAGTGGTAAATTAACAGAACATAATTTGTTTCTTACGTTTTCCTGTTGTGACTTCCTTATGCGATTGAATGATATTTTTTATTTCAATTATTAAAATTTCTCACACTACCCAATTTTTAACTTTATATTTCATAGGTAGCGGTTATTGCTCCCTTTAATTTTCCTTTGGAGATTCCTTTGCTTCAGCTGATGGGAGCGTTGTATATGGGAAATAAGCCAGTACTTAAAGTTGATAGCAAGGTAAGGTTGTGCAAATTTTTGTAGACTCTTTCACGTGCAAAATTACTTATCGGACAAGGTCCAGCTTAGAAACAAACTTGTCTATCATATATCAAAGAAGAAAAATTTGCTATTGATTTTTACAAACTCCTTACTTTTTTTGTCAAATTAACAAAATGTGCAGATAATTGGAAGATTTTGTTCCTAGTTTAGTTTATTTTTTCCTGTTAATAACTCTAAATATTTTTCCAGTGTGGTTTTTATAATTCGACCTGCATTGTTGGTTAGGTATGCATTGTTATGGAACAAATGCTTCGACTACTTCATGAGTGTGGGTTACCTGTGGATGATGTGGATTTCATAAACTCAGATGGAAAGACAATGAACAAGCTACTCGTGGAGGTTAATTTCTAAAACTAGACTCCTTTGGCCACTTATGAACAAGAATTGGCAACTGAAAATTACAAATTTTAGTCCAAAAACTTCCCATCCTATTAAAATTTTGTTGTCCTCATGTTATGTGCAAATAACCTTCACTTCAACCATGTTAAACTAATTCAGGAATCCCAAGAATAATTTAATCTATTTTCTTTGTTGAATTGTTGGCTTTTCGCACTAATATGGAGTAATTAACTTTCTAGAGTCTATAATAATTGTCGGATTCTTTCTAACCAACTTTTCCAACTACTAAAGATAATATTCCTATTTCCTGACATAGTTCTCTTTCGTATTGTGTCGTTAGGCAAAACCACGCATGACTCTCTTCACAGGTAGCTCAAGGGTGGCAGAGAAGTTAGCTGATGACCTAAGCGGTCGAGT</genome_strand>
        <mrna_strand>TTTCTTTGCGAAGCTAATACAAAGGGTGTCTCCTAAGAGTTACCAACAAGCTCTTGTTGAAGTTCTCGTGACGCAGAAATTTCTGGAAAATTTCTGTGGTGATCAG...................................................................................................................................................................................................................................................................................................................................................................GTTCGCTTTCTAGCTAGATCTTTTGCAGTACCAGGAAATCATCTGGGGCAGCAGAGCCATGGTTTCCGATGGCCTTATGGACCT....................................................................................................................................................................................................................................................................................................................................................GTAGCGGTTATTGCTCCCTTTAATTTTCCTTTGGAGATTCCTTTGCTTCAGCTGATGGGAGCGTTGTATATGGGAAATAAGCCAGTACTTAAAGTTGATAGCAAG...........................................................................................................................................................................................................................................................................GTATGCATTGTTATGGAACAAATGCTTCGACTACTTCATGAGTGTGGGTTACCTGTGGATGATGTGGATTTCATAAACTCAGATGGAAAGACAATGAACAAGCTACTCGTGGAG....................................................................................................................................................................................................................................................................................................................................................GCAAAACCACGCATGACTCTCTTCACAGGTAGCTCAAGGGTGGCAGAGAAGTTAGCTGATGACCTAAGCGGTCGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260464" ref_strand="+" ref_description="SGN-E260464 [cLEG-54-A17]">
      <seq>aaaagtttggaagagaatgatgtatcgactttccgcatacaggcaattgcagaagagagcttcttctagtcatctcaattggatcactttattcgattctagaagatcaaaccacactttgtcttttgctactgtaaaagctgaagaagtatcaggctctcaacctgctgaagttcacaacttggtgcagggcaagtggacaaaatcttctagttggaatacaatattggatcccttgaatgggcagccgttcattaaagttgcagaagtaaatgaatcagaactgcagccgtttgtggagagcttgtccaagtgcccgaaacatggtctacataatccattcaaagcaccagaaaggtacttaatgttaggagacgtatctacaaaagcagctcatgcgcttggcttgcctgaggtttctgatttctttgcgaagctaatacaaagggtgtctcctaagagttaccaacaagctcttgttgaagttctcgtgacgcagaaatttctggaaaatttctgtggtgatcaggttcgctttctagctagatcttttgcagtaccaggaaatcatctggggcagcagagccatggtttccgatggccttatggacctgtagcggttattgctccctttaattttcctttggagattcctttgcttcagctgatgggagcgttgtatatgggaaataagccagtacttaaagttgatagcaaggtatgcattgttatggaacaaatgcttcgactacttcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103355" stop="99617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103228" g_stop="103124" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103123" i_stop="102320" i_length="804">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102319" g_stop="102240" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="185" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102239" i_stop="101927" i_length="313">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101926" g_stop="101823" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="289" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101822" i_stop="101615" i_length="208">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101614" g_stop="101547" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="357" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101546" i_stop="101406" i_length="141">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101405" g_stop="101348" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="415" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101347" i_stop="101223" i_length="125">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101222" g_stop="101109" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="529" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="101108" i_stop="100754" i_length="355">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="100753" g_stop="100670" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="613" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="100669" i_stop="100330" i_length="340">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="100329" g_stop="100225" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="718" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="100224" i_stop="99958" i_length="267">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.633" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="99957" g_stop="99917" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="719" r_stop="759" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E260464" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103228" e_stop="103124"/>
          <exon e_start="102319" e_stop="102240"/>
          <exon e_start="101926" e_stop="101823"/>
          <exon e_start="101614" e_stop="101547"/>
          <exon e_start="101405" e_stop="101348"/>
          <exon e_start="101222" e_stop="101109"/>
          <exon e_start="100753" e_stop="100670"/>
          <exon e_start="100329" e_stop="100225"/>
          <exon e_start="99957" e_stop="99917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTGGAAGAGAATGATGTATCGACTTTCCGCATACAGGCAATTGCAGAAGAGAGCTTCTTCTAGTCATCTCAATTGGATCACTTTATTCGATTCTAGAAGGTATACTCTTTTATTCTCATCATTTTCAGTAATAAAAGCTCTGTAAATAATCTAGGTTTAATAATTCTACTTTACAAAGCGATCGCCACCTAATTTCAGTTGTTTTGTTACAATAATGTAATGGTGTTTTGAAGGAATCACTTTTAATAGGTTAAAATTGTTCTTTAGAAGCGTTTACAATTTGATTATTGTAATCTTTGATAAATTTTGTGCATAGGGTAGGATGTATAAAGAACTTTACCTTATCTTTGTGGTGACAGAGATGTTGTTTTCGATAAAATCTAAGCTTTAGTTTTTTAAAAACTACCATTTTGGAAATTATTAGTTTAAATTCTGTTCATTCCAGTCCATCCGTTGGTAGTTTTTACGAAGGTTCATTATATCGTCCTTTATCTGGGCTTGAGACTACCAATGTGTTGTGTGACTATCTTTTTTTCTTTTCTAAACCAATTGTTTTAACAGAACCTGAAGTCCCTTCCATCTTTTTTAGTTAGTGCTACTATTTTTTCGCTATTAAGATTTTATTCCCTAAGGATTCAAAACGAAAAATGTCGTCTTTTTTATGTTATGGATGGATGATTTCTTGTATTTGATTCTTCCTTATTGGGCGTCTACATTATCATGATATGGACTTCTTGTTATCAGTGTAAATGCTGCTTAACTAGTATTTCTTTTTCTACTGAATTACGGTTCTGGGTAGTCTCAACCTTCTGTTTTGAGATAATCAATTGACGTGTATGGACCAAGCGGACGGTGTTGTTTTAGAGTCATTCAGACATTGTGATTTAATCTTTCATAATGCAGATCAAACCACACTTTGTCTTTTGCTACTGTAAAAGCTGAAGAAGTATCAGGCTCTCAACCTGCTGAAGTTCACAACTTGGGTATGTACATTTACATAACGACTAGCTGCTGAAATTGGTCATTAATATGCAGTTTTCCAACGTTTGCCTAAGAATAGATGTGAGATATACTGTATAGACTTTAGATAATTTTGTAAGTTTGAATGATGTTAAACTCCCTGTATACCATATGCATGTTAGCAATTGATATTGAAGTAATACATCACTTCCGTACACCACTTTTCTTTCGATCAGATTCAAGTGTGTTTCTCCTATAAAAAAGGGAGAAGCTAGCTCTGGTCATTGCTCTAGTTTACTGCTACATCTAGTTGACTAGTGAATTTCATCCATTCAGTGCAGGGCAAGTGGACAAAATCTTCTAGTTGGAATACAATATTGGATCCCTTGAATGGGCAGCCGTTCATTAAAGTTGCAGAAGTAAATGAATCAGAACTGCAGGTATATATAATTTGGATGCATCATAATTCTTTGCACTGTATCTTTCAAGATGAGTCTTTCGACAGTAGAGTCTGTTTATTCTGTACAGTTAACTTGTTACTTTATGACCAACTCTAGTTCAGTCGCATAAAGACTTTTCCCTTCTAGTATGAATTCTTTAACACCAAAGATTGTCATGGTTCTATAAGTCCTATTGCTGGGTGTGCAGCCGTTTGTGGAGAGCTTGTCCAAGTGCCCGAAACATGGTCTACATAATCCATTCAAAGCACCAGAAAGGTATGCTTTTAATGTTTTTGGTCTTTTTCTTGTTTTTTTATGAAGTTGTCTAGATGAGCATTTACTGTCTTATGAATTTTTCTCCAAAGGAAGATATGAGGACTTAAGAAAATTTAATCCGAATGACACCGCTTCTCGCAGGTACTTAATGTTAGGAGACGTATCTACAAAAGCAGCTCATGCGCTTGGCTTGCCTGAGGTAATATATATTCAAGCAAGGATGCTGATGTTCTCGAAACCTTTTTGACTAACAGTTTATGATATGCATAATTAATTCTTATCATCTTAATGTTTTTCTTCTCTTTTTCTTTTTGGGTCTTACAGGTTTCTGATTTCTTTGCGAAGCTAATACAAAGGGTGTCTCCTAAGAGTTACCAACAAGCTCTTGTTGAAGTTCTCGTGACGCAGAAATTTCTGGAAAATTTCTGTGGTGATCAGGTAGATTCTAAAACTATTACCTTGTATGTTCAACGTTATACAGGGACTAGCTAAGAAAAAGATGTGTTTTAAATCGTGGCGCAACAATTCAGCAGCATAGCTTTCACATCCATGTGATTTTTTTGCTGCTTTATTTTATTTCAACAATTTTGTGTCTACTGATTGGTTGTTTCTTTTTTCCTTTTGCTGTTCTGTTAACTGTTAGTAGCTTTTTTGACACTGAAATATTTGAAAGCTTAATAGGTTTCAGTTTCAGGAACAAGGACTTATTTCACACGGGAATCATTTCTCCATTTTCTTTAACATGATACATGACTGTCCGATCCAATGCTGAACTCTTGATTTTATTTGGCAGGTTCGCTTTCTAGCTAGATCTTTTGCAGTACCAGGAAATCATCTGGGGCAGCAGAGCCATGGTTTCCGATGGCCTTATGGACCTGTAAGGCACCGTTCTTTCCGTTGTTGACTATATTTAATGGAACATGTTAACAAAAAAGTCCTATGATACAATCTTTCACGTTGAAACTGAGATCTGAAGGTTTAGTTATGTAACTAAAATCACTTAGCTTCGGGGGAAACAAATTCTTCACAATTTCAGAATGGTGTTAAGTTGTGTTATACATTGCTTTTGGCCATAGTGCTCAAAGTGGTAAATTAACAGAACATAATTTGTTTCTTACGTTTTCCTGTTGTGACTTCCTTATGCGATTGAATGATATTTTTTATTTCAATTATTAAAATTTCTCACACTACCCAATTTTTAACTTTATATTTCATAGGTAGCGGTTATTGCTCCCTTTAATTTTCCTTTGGAGATTCCTTTGCTTCAGCTGATGGGAGCGTTGTATATGGGAAATAAGCCAGTACTTAAAGTTGATAGCAAGGTAAGGTTGTGCAAATTTTTGTAGACTCTTTCACGTGCAAAATTACTTATCGGACAAGGTCCAGCTTAGAAACAAACTTGTCTATCATATATCAAAGAAGAAAAATTTGCTATTGATTTTTACAAACTCCTTACTTTTTTTGTCAAATTAACAAAATGTGCAGATAATTGGAAGATTTTGTTCCTAGTTTAGTTTATTTTTTCCTGTTAATAACTCTAAATATTTTTCCAGTGTGGTTTTTATAATTCGACCTGCATTGTTGGTTAGGTATGCATTGTTATGGAACAAATGCTTCGACTACTTCATGA</genome_strand>
        <mrna_strand>AAAAGTTTGGAAGAGAATGATGTATCGACTTTCCGCATACAGGCAATTGCAGAAGAGAGCTTCTTCTAGTCATCTCAATTGGATCACTTTATTCGATTCTAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAACCACACTTTGTCTTTTGCTACTGTAAAAGCTGAAGAAGTATCAGGCTCTCAACCTGCTGAAGTTCACAACTTGG.........................................................................................................................................................................................................................................................................................................................TGCAGGGCAAGTGGACAAAATCTTCTAGTTGGAATACAATATTGGATCCCTTGAATGGGCAGCCGTTCATTAAAGTTGCAGAAGTAAATGAATCAGAACTGCAG................................................................................................................................................................................................................CCGTTTGTGGAGAGCTTGTCCAAGTGCCCGAAACATGGTCTACATAATCCATTCAAAGCACCAGAAAG.............................................................................................................................................GTACTTAATGTTAGGAGACGTATCTACAAAAGCAGCTCATGCGCTTGGCTTGCCTGAG.............................................................................................................................GTTTCTGATTTCTTTGCGAAGCTAATACAAAGGGTGTCTCCTAAGAGTTACCAACAAGCTCTTGTTGAAGTTCTCGTGACGCAGAAATTTCTGGAAAATTTCTGTGGTGATCAG...................................................................................................................................................................................................................................................................................................................................................................GTTCGCTTTCTAGCTAGATCTTTTGCAGTACCAGGAAATCATCTGGGGCAGCAGAGCCATGGTTTCCGATGGCCTTATGGACCT....................................................................................................................................................................................................................................................................................................................................................GTAGCGGTTATTGCTCCCTTTAATTTTCCTTTGGAGATTCCTTTGCTTCAGCTGATGGGAGCGTTGTATATGGGAAATAAGCCAGTACTTAAAGTTGATAGCAAG...........................................................................................................................................................................................................................................................................GTATGCATTGTTATGGAACAAATGCTTCGACTACTTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314095" ref_strand="+" ref_description="SGN-E314095 [cTOA-19-O6]">
      <seq>aaaagtttggaagagaatgatgtatcgactttccgcatacaggcaattgcagaagagagcttcttctagtcatctcaattggatcactttattcgattctagaagatcaaaccacactttgtcttttgctactgtaaaagctgaagaagtatcaggctctcaacctgctgaagttcacaacttggtgcagggcaagtggacaaaatcttctagttggaatacaatattggatcccttgaatgggcagccgttcattaaagttgcagaagtaaatgaatcagaactgcagccgtttgtggagagcttgtccaagtgcccgaaacatggtctacataatccattcaaagcaccagaaaggtacttaatgttaggagacgtatctacaaaagcagctcatgcgcttggcttgcctgaggtttctgatttctttgcgaagctaatacaaagggtgtctcctaagagttaccaacaagctcttgttgaagttctcgtgacgcagaaatttctggaaaatttctgtggtgatcaggttcgctttctagctagatcttttgcagtaccaggaaatcatctgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103355" stop="100406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103228" g_stop="103124" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103123" i_stop="102320" i_length="804">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102319" g_stop="102240" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="185" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102239" i_stop="101927" i_length="313">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101926" g_stop="101823" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="289" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101822" i_stop="101615" i_length="208">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101614" g_stop="101547" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="357" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101546" i_stop="101406" i_length="141">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101405" g_stop="101348" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="415" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101347" i_stop="101223" i_length="125">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101222" g_stop="101109" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="529" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="101108" i_stop="100754" i_length="355">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="100753" g_stop="100706" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="577" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E314095" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103228" e_stop="103124"/>
          <exon e_start="102319" e_stop="102240"/>
          <exon e_start="101926" e_stop="101823"/>
          <exon e_start="101614" e_stop="101547"/>
          <exon e_start="101405" e_stop="101348"/>
          <exon e_start="101222" e_stop="101109"/>
          <exon e_start="100753" e_stop="100706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTGGAAGAGAATGATGTATCGACTTTCCGCATACAGGCAATTGCAGAAGAGAGCTTCTTCTAGTCATCTCAATTGGATCACTTTATTCGATTCTAGAAGGTATACTCTTTTATTCTCATCATTTTCAGTAATAAAAGCTCTGTAAATAATCTAGGTTTAATAATTCTACTTTACAAAGCGATCGCCACCTAATTTCAGTTGTTTTGTTACAATAATGTAATGGTGTTTTGAAGGAATCACTTTTAATAGGTTAAAATTGTTCTTTAGAAGCGTTTACAATTTGATTATTGTAATCTTTGATAAATTTTGTGCATAGGGTAGGATGTATAAAGAACTTTACCTTATCTTTGTGGTGACAGAGATGTTGTTTTCGATAAAATCTAAGCTTTAGTTTTTTAAAAACTACCATTTTGGAAATTATTAGTTTAAATTCTGTTCATTCCAGTCCATCCGTTGGTAGTTTTTACGAAGGTTCATTATATCGTCCTTTATCTGGGCTTGAGACTACCAATGTGTTGTGTGACTATCTTTTTTTCTTTTCTAAACCAATTGTTTTAACAGAACCTGAAGTCCCTTCCATCTTTTTTAGTTAGTGCTACTATTTTTTCGCTATTAAGATTTTATTCCCTAAGGATTCAAAACGAAAAATGTCGTCTTTTTTATGTTATGGATGGATGATTTCTTGTATTTGATTCTTCCTTATTGGGCGTCTACATTATCATGATATGGACTTCTTGTTATCAGTGTAAATGCTGCTTAACTAGTATTTCTTTTTCTACTGAATTACGGTTCTGGGTAGTCTCAACCTTCTGTTTTGAGATAATCAATTGACGTGTATGGACCAAGCGGACGGTGTTGTTTTAGAGTCATTCAGACATTGTGATTTAATCTTTCATAATGCAGATCAAACCACACTTTGTCTTTTGCTACTGTAAAAGCTGAAGAAGTATCAGGCTCTCAACCTGCTGAAGTTCACAACTTGGGTATGTACATTTACATAACGACTAGCTGCTGAAATTGGTCATTAATATGCAGTTTTCCAACGTTTGCCTAAGAATAGATGTGAGATATACTGTATAGACTTTAGATAATTTTGTAAGTTTGAATGATGTTAAACTCCCTGTATACCATATGCATGTTAGCAATTGATATTGAAGTAATACATCACTTCCGTACACCACTTTTCTTTCGATCAGATTCAAGTGTGTTTCTCCTATAAAAAAGGGAGAAGCTAGCTCTGGTCATTGCTCTAGTTTACTGCTACATCTAGTTGACTAGTGAATTTCATCCATTCAGTGCAGGGCAAGTGGACAAAATCTTCTAGTTGGAATACAATATTGGATCCCTTGAATGGGCAGCCGTTCATTAAAGTTGCAGAAGTAAATGAATCAGAACTGCAGGTATATATAATTTGGATGCATCATAATTCTTTGCACTGTATCTTTCAAGATGAGTCTTTCGACAGTAGAGTCTGTTTATTCTGTACAGTTAACTTGTTACTTTATGACCAACTCTAGTTCAGTCGCATAAAGACTTTTCCCTTCTAGTATGAATTCTTTAACACCAAAGATTGTCATGGTTCTATAAGTCCTATTGCTGGGTGTGCAGCCGTTTGTGGAGAGCTTGTCCAAGTGCCCGAAACATGGTCTACATAATCCATTCAAAGCACCAGAAAGGTATGCTTTTAATGTTTTTGGTCTTTTTCTTGTTTTTTTATGAAGTTGTCTAGATGAGCATTTACTGTCTTATGAATTTTTCTCCAAAGGAAGATATGAGGACTTAAGAAAATTTAATCCGAATGACACCGCTTCTCGCAGGTACTTAATGTTAGGAGACGTATCTACAAAAGCAGCTCATGCGCTTGGCTTGCCTGAGGTAATATATATTCAAGCAAGGATGCTGATGTTCTCGAAACCTTTTTGACTAACAGTTTATGATATGCATAATTAATTCTTATCATCTTAATGTTTTTCTTCTCTTTTTCTTTTTGGGTCTTACAGGTTTCTGATTTCTTTGCGAAGCTAATACAAAGGGTGTCTCCTAAGAGTTACCAACAAGCTCTTGTTGAAGTTCTCGTGACGCAGAAATTTCTGGAAAATTTCTGTGGTGATCAGGTAGATTCTAAAACTATTACCTTGTATGTTCAACGTTATACAGGGACTAGCTAAGAAAAAGATGTGTTTTAAATCGTGGCGCAACAATTCAGCAGCATAGCTTTCACATCCATGTGATTTTTTTGCTGCTTTATTTTATTTCAACAATTTTGTGTCTACTGATTGGTTGTTTCTTTTTTCCTTTTGCTGTTCTGTTAACTGTTAGTAGCTTTTTTGACACTGAAATATTTGAAAGCTTAATAGGTTTCAGTTTCAGGAACAAGGACTTATTTCACACGGGAATCATTTCTCCATTTTCTTTAACATGATACATGACTGTCCGATCCAATGCTGAACTCTTGATTTTATTTGGCAGGTTCGCTTTCTAGCTAGATCTTTTGCAGTACCAGGAAATCATCTGGGG</genome_strand>
        <mrna_strand>AAAAGTTTGGAAGAGAATGATGTATCGACTTTCCGCATACAGGCAATTGCAGAAGAGAGCTTCTTCTAGTCATCTCAATTGGATCACTTTATTCGATTCTAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAACCACACTTTGTCTTTTGCTACTGTAAAAGCTGAAGAAGTATCAGGCTCTCAACCTGCTGAAGTTCACAACTTGG.........................................................................................................................................................................................................................................................................................................................TGCAGGGCAAGTGGACAAAATCTTCTAGTTGGAATACAATATTGGATCCCTTGAATGGGCAGCCGTTCATTAAAGTTGCAGAAGTAAATGAATCAGAACTGCAG................................................................................................................................................................................................................CCGTTTGTGGAGAGCTTGTCCAAGTGCCCGAAACATGGTCTACATAATCCATTCAAAGCACCAGAAAG.............................................................................................................................................GTACTTAATGTTAGGAGACGTATCTACAAAAGCAGCTCATGCGCTTGGCTTGCCTGAG.............................................................................................................................GTTTCTGATTTCTTTGCGAAGCTAATACAAAGGGTGTCTCCTAAGAGTTACCAACAAGCTCTTGTTGAAGTTCTCGTGACGCAGAAATTTCTGGAAAATTTCTGTGGTGATCAG...................................................................................................................................................................................................................................................................................................................................................................GTTCGCTTTCTAGCTAGATCTTTTGCAGTACCAGGAAATCATCTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247500" ref_strand="+" ref_description="SGN-E247500 [cLEF-42-I11]">
      <seq>aaagtttggaagagaatgatgtatcgactttccgcatacaggcaattgcagaagagagcttcttctagtcatctcaattggatcactttattcgattctagaagatcaaaccacactttgtcttttgctactgtaaaagctgaagaagtatcaggctctcaacctgctgaagttcacaacttggtgcagggcaagtggacaaaatcttctagttggaatacaatattggatcccttgaatgggcagccgttcattaaagttgcagaagtaaatgaatcagaactgcagccgtttgtggagagcttgtccaagtgcccgaaacatggtctacataatccattcaaagcaccagaaaggtacttaatgttaggagacgtatctacaaaagcagctcatgcgcttggcttgcctgaggtttctgatttctttgcgaagctaatacaaagggtgtctcctaagagttaccaacaagctcttgttgaagttctcgtgacgcagaaatttctggaaaatttctgtggtgatcaggttcgctttctagctagatcttttgcagtaccaggaaatcatctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103355" stop="100407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103227" g_stop="103124" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103123" i_stop="102320" i_length="804">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102319" g_stop="102240" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="184" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102239" i_stop="101927" i_length="313">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101926" g_stop="101823" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="288" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101822" i_stop="101615" i_length="208">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101614" g_stop="101547" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="356" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101546" i_stop="101406" i_length="141">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101405" g_stop="101348" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="414" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101347" i_stop="101223" i_length="125">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101222" g_stop="101109" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="528" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="101108" i_stop="100754" i_length="355">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="100753" g_stop="100707" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="575" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E247500" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103227" e_stop="103124"/>
          <exon e_start="102319" e_stop="102240"/>
          <exon e_start="101926" e_stop="101823"/>
          <exon e_start="101614" e_stop="101547"/>
          <exon e_start="101405" e_stop="101348"/>
          <exon e_start="101222" e_stop="101109"/>
          <exon e_start="100753" e_stop="100707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTTGGAAGAGAATGATGTATCGACTTTCCGCATACAGGCAATTGCAGAAGAGAGCTTCTTCTAGTCATCTCAATTGGATCACTTTATTCGATTCTAGAAGGTATACTCTTTTATTCTCATCATTTTCAGTAATAAAAGCTCTGTAAATAATCTAGGTTTAATAATTCTACTTTACAAAGCGATCGCCACCTAATTTCAGTTGTTTTGTTACAATAATGTAATGGTGTTTTGAAGGAATCACTTTTAATAGGTTAAAATTGTTCTTTAGAAGCGTTTACAATTTGATTATTGTAATCTTTGATAAATTTTGTGCATAGGGTAGGATGTATAAAGAACTTTACCTTATCTTTGTGGTGACAGAGATGTTGTTTTCGATAAAATCTAAGCTTTAGTTTTTTAAAAACTACCATTTTGGAAATTATTAGTTTAAATTCTGTTCATTCCAGTCCATCCGTTGGTAGTTTTTACGAAGGTTCATTATATCGTCCTTTATCTGGGCTTGAGACTACCAATGTGTTGTGTGACTATCTTTTTTTCTTTTCTAAACCAATTGTTTTAACAGAACCTGAAGTCCCTTCCATCTTTTTTAGTTAGTGCTACTATTTTTTCGCTATTAAGATTTTATTCCCTAAGGATTCAAAACGAAAAATGTCGTCTTTTTTATGTTATGGATGGATGATTTCTTGTATTTGATTCTTCCTTATTGGGCGTCTACATTATCATGATATGGACTTCTTGTTATCAGTGTAAATGCTGCTTAACTAGTATTTCTTTTTCTACTGAATTACGGTTCTGGGTAGTCTCAACCTTCTGTTTTGAGATAATCAATTGACGTGTATGGACCAAGCGGACGGTGTTGTTTTAGAGTCATTCAGACATTGTGATTTAATCTTTCATAATGCAGATCAAACCACACTTTGTCTTTTGCTACTGTAAAAGCTGAAGAAGTATCAGGCTCTCAACCTGCTGAAGTTCACAACTTGGGTATGTACATTTACATAACGACTAGCTGCTGAAATTGGTCATTAATATGCAGTTTTCCAACGTTTGCCTAAGAATAGATGTGAGATATACTGTATAGACTTTAGATAATTTTGTAAGTTTGAATGATGTTAAACTCCCTGTATACCATATGCATGTTAGCAATTGATATTGAAGTAATACATCACTTCCGTACACCACTTTTCTTTCGATCAGATTCAAGTGTGTTTCTCCTATAAAAAAGGGAGAAGCTAGCTCTGGTCATTGCTCTAGTTTACTGCTACATCTAGTTGACTAGTGAATTTCATCCATTCAGTGCAGGGCAAGTGGACAAAATCTTCTAGTTGGAATACAATATTGGATCCCTTGAATGGGCAGCCGTTCATTAAAGTTGCAGAAGTAAATGAATCAGAACTGCAGGTATATATAATTTGGATGCATCATAATTCTTTGCACTGTATCTTTCAAGATGAGTCTTTCGACAGTAGAGTCTGTTTATTCTGTACAGTTAACTTGTTACTTTATGACCAACTCTAGTTCAGTCGCATAAAGACTTTTCCCTTCTAGTATGAATTCTTTAACACCAAAGATTGTCATGGTTCTATAAGTCCTATTGCTGGGTGTGCAGCCGTTTGTGGAGAGCTTGTCCAAGTGCCCGAAACATGGTCTACATAATCCATTCAAAGCACCAGAAAGGTATGCTTTTAATGTTTTTGGTCTTTTTCTTGTTTTTTTATGAAGTTGTCTAGATGAGCATTTACTGTCTTATGAATTTTTCTCCAAAGGAAGATATGAGGACTTAAGAAAATTTAATCCGAATGACACCGCTTCTCGCAGGTACTTAATGTTAGGAGACGTATCTACAAAAGCAGCTCATGCGCTTGGCTTGCCTGAGGTAATATATATTCAAGCAAGGATGCTGATGTTCTCGAAACCTTTTTGACTAACAGTTTATGATATGCATAATTAATTCTTATCATCTTAATGTTTTTCTTCTCTTTTTCTTTTTGGGTCTTACAGGTTTCTGATTTCTTTGCGAAGCTAATACAAAGGGTGTCTCCTAAGAGTTACCAACAAGCTCTTGTTGAAGTTCTCGTGACGCAGAAATTTCTGGAAAATTTCTGTGGTGATCAGGTAGATTCTAAAACTATTACCTTGTATGTTCAACGTTATACAGGGACTAGCTAAGAAAAAGATGTGTTTTAAATCGTGGCGCAACAATTCAGCAGCATAGCTTTCACATCCATGTGATTTTTTTGCTGCTTTATTTTATTTCAACAATTTTGTGTCTACTGATTGGTTGTTTCTTTTTTCCTTTTGCTGTTCTGTTAACTGTTAGTAGCTTTTTTGACACTGAAATATTTGAAAGCTTAATAGGTTTCAGTTTCAGGAACAAGGACTTATTTCACACGGGAATCATTTCTCCATTTTCTTTAACATGATACATGACTGTCCGATCCAATGCTGAACTCTTGATTTTATTTGGCAGGTTCGCTTTCTAGCTAGATCTTTTGCAGTACCAGGAAATCATCTGGG</genome_strand>
        <mrna_strand>AAAGTTTGGAAGAGAATGATGTATCGACTTTCCGCATACAGGCAATTGCAGAAGAGAGCTTCTTCTAGTCATCTCAATTGGATCACTTTATTCGATTCTAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAACCACACTTTGTCTTTTGCTACTGTAAAAGCTGAAGAAGTATCAGGCTCTCAACCTGCTGAAGTTCACAACTTGG.........................................................................................................................................................................................................................................................................................................................TGCAGGGCAAGTGGACAAAATCTTCTAGTTGGAATACAATATTGGATCCCTTGAATGGGCAGCCGTTCATTAAAGTTGCAGAAGTAAATGAATCAGAACTGCAG................................................................................................................................................................................................................CCGTTTGTGGAGAGCTTGTCCAAGTGCCCGAAACATGGTCTACATAATCCATTCAAAGCACCAGAAAG.............................................................................................................................................GTACTTAATGTTAGGAGACGTATCTACAAAAGCAGCTCATGCGCTTGGCTTGCCTGAG.............................................................................................................................GTTTCTGATTTCTTTGCGAAGCTAATACAAAGGGTGTCTCCTAAGAGTTACCAACAAGCTCTTGTTGAAGTTCTCGTGACGCAGAAATTTCTGGAAAATTTCTGTGGTGATCAG...................................................................................................................................................................................................................................................................................................................................................................GTTCGCTTTCTAGCTAGATCTTTTGCAGTACCAGGAAATCATCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273076" ref_strand="+" ref_description="SGN-E273076 [cLEM-24-A21]">
      <seq>atcgactttccgcatacaggcaattgcagaagagagcttcttctagtcatctcaattggatcactttattcgattctagaagatcaaaccacactttgtcttttgctactgtaaaagctgaagaagtatcaggctctcaacctgctgaagttcacaacttggtgcagggcaagtggacaaaatcttctagttggaatacaatattggatcccttgaatgggcagccgttcattaaagttgcagaagtaaatgaatcagaactgcagccgtttgtggagagcttgtccaagtgcccgaaacatggtctacataatccattcaaagcaccagaaaggtacttaatgttaggagacgtatctacaaaagcagctcatgcgcttggcttgcctgaggtttctgatttctttgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103355" stop="100905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103205" g_stop="103124" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103123" i_stop="102320" i_length="804">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102319" g_stop="102240" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="162" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102239" i_stop="101927" i_length="313">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101926" g_stop="101823" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="266" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101822" i_stop="101615" i_length="208">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101614" g_stop="101547" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="334" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101546" i_stop="101406" i_length="141">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101405" g_stop="101348" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="392" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101347" i_stop="101223" i_length="125">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101222" g_stop="101205" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="410" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E273076" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103205" e_stop="103124"/>
          <exon e_start="102319" e_stop="102240"/>
          <exon e_start="101926" e_stop="101823"/>
          <exon e_start="101614" e_stop="101547"/>
          <exon e_start="101405" e_stop="101348"/>
          <exon e_start="101222" e_stop="101205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGACTTTCCGCATACAGGCAATTGCAGAAGAGAGCTTCTTCTAGTCATCTCAATTGGATCACTTTATTCGATTCTAGAAGGTATACTCTTTTATTCTCATCATTTTCAGTAATAAAAGCTCTGTAAATAATCTAGGTTTAATAATTCTACTTTACAAAGCGATCGCCACCTAATTTCAGTTGTTTTGTTACAATAATGTAATGGTGTTTTGAAGGAATCACTTTTAATAGGTTAAAATTGTTCTTTAGAAGCGTTTACAATTTGATTATTGTAATCTTTGATAAATTTTGTGCATAGGGTAGGATGTATAAAGAACTTTACCTTATCTTTGTGGTGACAGAGATGTTGTTTTCGATAAAATCTAAGCTTTAGTTTTTTAAAAACTACCATTTTGGAAATTATTAGTTTAAATTCTGTTCATTCCAGTCCATCCGTTGGTAGTTTTTACGAAGGTTCATTATATCGTCCTTTATCTGGGCTTGAGACTACCAATGTGTTGTGTGACTATCTTTTTTTCTTTTCTAAACCAATTGTTTTAACAGAACCTGAAGTCCCTTCCATCTTTTTTAGTTAGTGCTACTATTTTTTCGCTATTAAGATTTTATTCCCTAAGGATTCAAAACGAAAAATGTCGTCTTTTTTATGTTATGGATGGATGATTTCTTGTATTTGATTCTTCCTTATTGGGCGTCTACATTATCATGATATGGACTTCTTGTTATCAGTGTAAATGCTGCTTAACTAGTATTTCTTTTTCTACTGAATTACGGTTCTGGGTAGTCTCAACCTTCTGTTTTGAGATAATCAATTGACGTGTATGGACCAAGCGGACGGTGTTGTTTTAGAGTCATTCAGACATTGTGATTTAATCTTTCATAATGCAGATCAAACCACACTTTGTCTTTTGCTACTGTAAAAGCTGAAGAAGTATCAGGCTCTCAACCTGCTGAAGTTCACAACTTGGGTATGTACATTTACATAACGACTAGCTGCTGAAATTGGTCATTAATATGCAGTTTTCCAACGTTTGCCTAAGAATAGATGTGAGATATACTGTATAGACTTTAGATAATTTTGTAAGTTTGAATGATGTTAAACTCCCTGTATACCATATGCATGTTAGCAATTGATATTGAAGTAATACATCACTTCCGTACACCACTTTTCTTTCGATCAGATTCAAGTGTGTTTCTCCTATAAAAAAGGGAGAAGCTAGCTCTGGTCATTGCTCTAGTTTACTGCTACATCTAGTTGACTAGTGAATTTCATCCATTCAGTGCAGGGCAAGTGGACAAAATCTTCTAGTTGGAATACAATATTGGATCCCTTGAATGGGCAGCCGTTCATTAAAGTTGCAGAAGTAAATGAATCAGAACTGCAGGTATATATAATTTGGATGCATCATAATTCTTTGCACTGTATCTTTCAAGATGAGTCTTTCGACAGTAGAGTCTGTTTATTCTGTACAGTTAACTTGTTACTTTATGACCAACTCTAGTTCAGTCGCATAAAGACTTTTCCCTTCTAGTATGAATTCTTTAACACCAAAGATTGTCATGGTTCTATAAGTCCTATTGCTGGGTGTGCAGCCGTTTGTGGAGAGCTTGTCCAAGTGCCCGAAACATGGTCTACATAATCCATTCAAAGCACCAGAAAGGTATGCTTTTAATGTTTTTGGTCTTTTTCTTGTTTTTTTATGAAGTTGTCTAGATGAGCATTTACTGTCTTATGAATTTTTCTCCAAAGGAAGATATGAGGACTTAAGAAAATTTAATCCGAATGACACCGCTTCTCGCAGGTACTTAATGTTAGGAGACGTATCTACAAAAGCAGCTCATGCGCTTGGCTTGCCTGAGGTAATATATATTCAAGCAAGGATGCTGATGTTCTCGAAACCTTTTTGACTAACAGTTTATGATATGCATAATTAATTCTTATCATCTTAATGTTTTTCTTCTCTTTTTCTTTTTGGGTCTTACAGGTTTCTGATTTCTTTGCG</genome_strand>
        <mrna_strand>ATCGACTTTCCGCATACAGGCAATTGCAGAAGAGAGCTTCTTCTAGTCATCTCAATTGGATCACTTTATTCGATTCTAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAACCACACTTTGTCTTTTGCTACTGTAAAAGCTGAAGAAGTATCAGGCTCTCAACCTGCTGAAGTTCACAACTTGG.........................................................................................................................................................................................................................................................................................................................TGCAGGGCAAGTGGACAAAATCTTCTAGTTGGAATACAATATTGGATCCCTTGAATGGGCAGCCGTTCATTAAAGTTGCAGAAGTAAATGAATCAGAACTGCAG................................................................................................................................................................................................................CCGTTTGTGGAGAGCTTGTCCAAGTGCCCGAAACATGGTCTACATAATCCATTCAAAGCACCAGAAAG.............................................................................................................................................GTACTTAATGTTAGGAGACGTATCTACAAAAGCAGCTCATGCGCTTGGCTTGCCTGAG.............................................................................................................................GTTTCTGATTTCTTTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306891" ref_strand="+" ref_description="SGN-E306891 [cLEY-11-A19]">
      <seq>gaagagaatgatgtatcgactttccgcatacaggcaattgcagaagagagcttcttctagtcatctcaattggatcactttattcgattctagaagatcaaaccacactttgtcttttgctactgtaaaagctgaagaagtatcaggctctcaacctgctgaagttcacaacttggtgcagggcaagtggacaaaatcttctagttggaatacaatattggatcccttgaatgggcagccgttcattaaagttgcagaagtaaatgaatcagaactgcagccgtttgtggagagcttgtccaagtgcccgaaacatggtctacataatccattcaaagcaccagaaaggtacttaatgttaggagacgtatctacaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103355" stop="101074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103219" g_stop="103124" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103123" i_stop="102320" i_length="804">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102319" g_stop="102240" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="176" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102239" i_stop="101927" i_length="313">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101926" g_stop="101823" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="280" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101822" i_stop="101615" i_length="208">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101614" g_stop="101547" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="348" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101546" i_stop="101406" i_length="141">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.334" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101405" g_stop="101374" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="380" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E306891" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103219" e_stop="103124"/>
          <exon e_start="102319" e_stop="102240"/>
          <exon e_start="101926" e_stop="101823"/>
          <exon e_start="101614" e_stop="101547"/>
          <exon e_start="101405" e_stop="101374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGAATGATGTATCGACTTTCCGCATACAGGCAATTGCAGAAGAGAGCTTCTTCTAGTCATCTCAATTGGATCACTTTATTCGATTCTAGAAGGTATACTCTTTTATTCTCATCATTTTCAGTAATAAAAGCTCTGTAAATAATCTAGGTTTAATAATTCTACTTTACAAAGCGATCGCCACCTAATTTCAGTTGTTTTGTTACAATAATGTAATGGTGTTTTGAAGGAATCACTTTTAATAGGTTAAAATTGTTCTTTAGAAGCGTTTACAATTTGATTATTGTAATCTTTGATAAATTTTGTGCATAGGGTAGGATGTATAAAGAACTTTACCTTATCTTTGTGGTGACAGAGATGTTGTTTTCGATAAAATCTAAGCTTTAGTTTTTTAAAAACTACCATTTTGGAAATTATTAGTTTAAATTCTGTTCATTCCAGTCCATCCGTTGGTAGTTTTTACGAAGGTTCATTATATCGTCCTTTATCTGGGCTTGAGACTACCAATGTGTTGTGTGACTATCTTTTTTTCTTTTCTAAACCAATTGTTTTAACAGAACCTGAAGTCCCTTCCATCTTTTTTAGTTAGTGCTACTATTTTTTCGCTATTAAGATTTTATTCCCTAAGGATTCAAAACGAAAAATGTCGTCTTTTTTATGTTATGGATGGATGATTTCTTGTATTTGATTCTTCCTTATTGGGCGTCTACATTATCATGATATGGACTTCTTGTTATCAGTGTAAATGCTGCTTAACTAGTATTTCTTTTTCTACTGAATTACGGTTCTGGGTAGTCTCAACCTTCTGTTTTGAGATAATCAATTGACGTGTATGGACCAAGCGGACGGTGTTGTTTTAGAGTCATTCAGACATTGTGATTTAATCTTTCATAATGCAGATCAAACCACACTTTGTCTTTTGCTACTGTAAAAGCTGAAGAAGTATCAGGCTCTCAACCTGCTGAAGTTCACAACTTGGGTATGTACATTTACATAACGACTAGCTGCTGAAATTGGTCATTAATATGCAGTTTTCCAACGTTTGCCTAAGAATAGATGTGAGATATACTGTATAGACTTTAGATAATTTTGTAAGTTTGAATGATGTTAAACTCCCTGTATACCATATGCATGTTAGCAATTGATATTGAAGTAATACATCACTTCCGTACACCACTTTTCTTTCGATCAGATTCAAGTGTGTTTCTCCTATAAAAAAGGGAGAAGCTAGCTCTGGTCATTGCTCTAGTTTACTGCTACATCTAGTTGACTAGTGAATTTCATCCATTCAGTGCAGGGCAAGTGGACAAAATCTTCTAGTTGGAATACAATATTGGATCCCTTGAATGGGCAGCCGTTCATTAAAGTTGCAGAAGTAAATGAATCAGAACTGCAGGTATATATAATTTGGATGCATCATAATTCTTTGCACTGTATCTTTCAAGATGAGTCTTTCGACAGTAGAGTCTGTTTATTCTGTACAGTTAACTTGTTACTTTATGACCAACTCTAGTTCAGTCGCATAAAGACTTTTCCCTTCTAGTATGAATTCTTTAACACCAAAGATTGTCATGGTTCTATAAGTCCTATTGCTGGGTGTGCAGCCGTTTGTGGAGAGCTTGTCCAAGTGCCCGAAACATGGTCTACATAATCCATTCAAAGCACCAGAAAGGTATGCTTTTAATGTTTTTGGTCTTTTTCTTGTTTTTTTATGAAGTTGTCTAGATGAGCATTTACTGTCTTATGAATTTTTCTCCAAAGGAAGATATGAGGACTTAAGAAAATTTAATCCGAATGACACCGCTTCTCGCAGGTACTTAATGTTAGGAGACGTATCTACAAAAG</genome_strand>
        <mrna_strand>GAAGAGAATGATGTATCGACTTTCCGCATACAGGCAATTGCAGAAGAGAGCTTCTTCTAGTCATCTCAATTGGATCACTTTATTCGATTCTAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAACCACACTTTGTCTTTTGCTACTGTAAAAGCTGAAGAAGTATCAGGCTCTCAACCTGCTGAAGTTCACAACTTGG.........................................................................................................................................................................................................................................................................................................................TGCAGGGCAAGTGGACAAAATCTTCTAGTTGGAATACAATATTGGATCCCTTGAATGGGCAGCCGTTCATTAAAGTTGCAGAAGTAAATGAATCAGAACTGCAG................................................................................................................................................................................................................CCGTTTGTGGAGAGCTTGTCCAAGTGCCCGAAACATGGTCTACATAATCCATTCAAAGCACCAGAAAG.............................................................................................................................................GTACTTAATGTTAGGAGACGTATCTACAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316259" ref_strand="+" ref_description="SGN-E316259 [cTOA-23-N17]">
      <seq>tttggaagagaatgatgtatcgactttccgcatacaggcaattgcagaagagagcttcttctagtcatctcaattggatcactttattcgattctagaagatcaaaccacactttgtcttttgctactgtaaaagctgaagaagtatcacgctctcaacctgctgaagttcacaacttggtgcatggcaagtggacaaaatcttctagttgggatacagtattggatccctttgatgggcagccgttcattaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0128E05-ee9lv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0128E05.1" temp_strand="-" temp_description="C06HBa0128E05.1  AC211052.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0128E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103355" stop="101550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103223" g_stop="103124" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103123" i_stop="102320" i_length="804">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102319" g_stop="102240" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="180" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102239" i_stop="101927" i_length="313">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.857" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101926" g_stop="101850" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="256" r_length="76" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0128E05.1" gen_strand="-" ref_id="SGN-E316259" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>257</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0128E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103223" e_stop="103124"/>
          <exon e_start="102319" e_stop="102240"/>
          <exon e_start="101926" e_stop="101850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGAAGAGAATGATGTATCGACTTTCCGCATACAGGCAATTGCAGAAGAGAGCTTCTTCTAGTCATCTCAATTGGATCACTTTATTCGATTCTAGAAGGTATACTCTTTTATTCTCATCATTTTCAGTAATAAAAGCTCTGTAAATAATCTAGGTTTAATAATTCTACTTTACAAAGCGATCGCCACCTAATTTCAGTTGTTTTGTTACAATAATGTAATGGTGTTTTGAAGGAATCACTTTTAATAGGTTAAAATTGTTCTTTAGAAGCGTTTACAATTTGATTATTGTAATCTTTGATAAATTTTGTGCATAGGGTAGGATGTATAAAGAACTTTACCTTATCTTTGTGGTGACAGAGATGTTGTTTTCGATAAAATCTAAGCTTTAGTTTTTTAAAAACTACCATTTTGGAAATTATTAGTTTAAATTCTGTTCATTCCAGTCCATCCGTTGGTAGTTTTTACGAAGGTTCATTATATCGTCCTTTATCTGGGCTTGAGACTACCAATGTGTTGTGTGACTATCTTTTTTTCTTTTCTAAACCAATTGTTTTAACAGAACCTGAAGTCCCTTCCATCTTTTTTAGTTAGTGCTACTATTTTTTCGCTATTAAGATTTTATTCCCTAAGGATTCAAAACGAAAAATGTCGTCTTTTTTATGTTATGGATGGATGATTTCTTGTATTTGATTCTTCCTTATTGGGCGTCTACATTATCATGATATGGACTTCTTGTTATCAGTGTAAATGCTGCTTAACTAGTATTTCTTTTTCTACTGAATTACGGTTCTGGGTAGTCTCAACCTTCTGTTTTGAGATAATCAATTGACGTGTATGGACCAAGCGGACGGTGTTGTTTTAGAGTCATTCAGACATTGTGATTTAATCTTTCATAATGCAGATCAAACCACACTTTGTCTTTTGCTACTGTAAAAGCTGAAGAAGTATCAGGCTCTCAACCTGCTGAAGTTCACAACTTGGGTATGTACATTTACATAACGACTAGCTGCTGAAATTGGTCATTAATATGCAGTTTTCCAACGTTTGCCTAAGAATAGATGTGAGATATACTGTATAGACTTTAGATAATTTTGTAAGTTTGAATGATGTTAAACTCCCTGTATACCATATGCATGTTAGCAATTGATATTGAAGTAATACATCACTTCCGTACACCACTTTTCTTTCGATCAGATTCAAGTGTGTTTCTCCTATAAAAAAGGGAGAAGCTAGCTCTGGTCATTGCTCTAGTTTACTGCTACATCTAGTTGACTAGTGAATTTCATCCATTCAGTGCAGGGCAAGTGGACAAAATCTTCTAGTTGGAATACAATATTGGATCCCTTGAATGGGCAGCCGTTCATTAAAGTT</genome_strand>
        <mrna_strand>TTTGGAAGAGAATGATGTATCGACTTTCCGCATACAGGCAATTGCAGAAGAGAGCTTCTTCTAGTCATCTCAATTGGATCACTTTATTCGATTCTAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAACCACACTTTGTCTTTTGCTACTGTAAAAGCTGAAGAAGTATCACGCTCTCAACCTGCTGAAGTTCACAACTTGG.........................................................................................................................................................................................................................................................................................................................TGCATGGCAAGTGGACAAAATCTTCTAGTTGGGATACAGTATTGGATCCCTTTGATGGGCAGCCGTTCATT-AAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>181</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="5802" PGL_stop="7275"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5802" e_stop="6039"/>
            <exon e_start="6191" e_stop="6304"/>
            <exon e_start="6832" e_stop="7275"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5802" e_stop="6039" e_length="238"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="6040" i_stop="6190" i_length="151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6191" e_stop="6304" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="6305" i_stop="6831" i_length="527"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6832" e_stop="7275" e_length="444"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5802" stop="6039"/>
              <exon start="6191" stop="6304"/>
              <exon start="6832" stop="7070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5803" stop="6039"/>
              <exon start="6191" stop="6304"/>
              <exon start="6832" stop="7191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5803" stop="6039"/>
              <exon start="6191" stop="6304"/>
              <exon start="6832" stop="6899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5927" stop="6039"/>
              <exon start="6191" stop="6304"/>
              <exon start="6832" stop="7230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5998" stop="6039"/>
              <exon start="6191" stop="6304"/>
              <exon start="6832" stop="7275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210490" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGCCTTGATTTAGGATTGGATTGCAAGTTCGAAACAACGCCAACTGAATGTTCACCAGTGAATTATAGTCCGGAGAATAGCTTAGATGATATTCAAGCTAATAAGGATGAAAATGAAGAGACGTCGAATAAAAATCTCAAGACGATGAGAAATAATGGAGATGGAGATGATGTTTCGCAACAAAACCCTACTAAAAGAGCTAGGGTTTCTGTTAGAGTCAGATGTGATGCCCCTACG : ATGAATGATGGATGCCAATGGAGAAAATATGGTCAAAAAATAGCAAAAGGAAATCCATGCCCTAGAGCTTACTATCGTTGCACCGTAGCACCAAATTGCCCAGTTAGAAAGCAG : GTTCAAAGATGTGCCGAAGACATGTCAATATTGATCACCACATATGAAGGAACACACAACCATACCCTTCCTCTTTCAGCCACCGCAATGGCTTCTACCACCTCAGCGGCCGCTAGCATGCTGTTATCCGGTTCATCTAATTCATCAGACCCAAACCCACAAGTAACTGCCACCACCACCACTACCCCTACTACCACTACTTCTGCCAATATCAACGGACTCAACTTCTATCTCTCTGATACCTCAAAACATCATAAATCGCCATATTACTTTCCTAATTCATCCATCTCAGCATCCGCACCTAATTCCCTCCCTACAATTACACTCGATTTGACTTCCACCTCGTCCTCGTCCCCGTCCTCCTTATCTCATCTAAACAGAATGACTCAGAATTTTCCTCCTAGATATAATTACAATAACAATAATTCCACCACAAACCTCAAT</gDNA_template>
            <first_frame> K  P  *  F  R  I  G  L  Q  V  R  N  N  A  N  *  M  F  T  S  E  L  *  S  G  E  *  L  R  *  Y  S  S  *  *  G  *  K  *  R  D  V  E  *  K  S  Q  D  D  E  K  *  W  R  W  R  *  C  F  A  T  K  P  Y  *  K  S  *  G  F  C  *  S  Q  M  *  C  P  Y   : D  E  *  W  M  P  M  E  K  I  W  S  K  N  S  K  R  K  S  M  P  *  S  L  L  S  L  H  R  S  T  K  L  P  S  *  K  A   : G  S  K  M  C  R  R  H  V  N  I  D  H  H  I  *  R  N  T  Q  P  Y  P  S  S  F  S  H  R  N  G  F  Y  H  L  S  G  R  *  H  A  V  I  R  F  I  *  F  I  R  P  K  P  T  S  N  C  H  H  H  H  Y  P  Y  Y  H  Y  F  C  Q  Y  Q  R  T  Q  L  L  S  L  *  Y  L  K  T  S  *  I  A  I  L  L  S  *  F  I  H  L  S  I  R  T  *  F  P  P  Y  N  Y  T  R  F  D  F  H  L  V  L  V  P  V  L  L  I  S  S  K  Q  N  D  S  E  F  S  S  *  I  *  L  Q  *  Q  *  F  H  H  K  P  Q  </first_frame>
            <second_frame>  S  L  D  L  G  L  D  C  K  F  E  T  T  P  T  E  C  S  P  V  N  Y  S  P  E  N  S  L  D  D  I  Q  A  N  K  D  E  N  E  E  T  S  N  K  N  L  K  T  M  R  N  N  G  D  G  D  D  V  S  Q  Q  N  P  T  K  R  A  R  V  S  V  R  V  R  C  D  A  P  T  :  M  N  D  G  C  Q  W  R  K  Y  G  Q  K  I  A  K  G  N  P  C  P  R  A  Y  Y  R  C  T  V  A  P  N  C  P  V  R  K  Q  :  V  Q  R  C  A  E  D  M  S  I  L  I  T  T  Y  E  G  T  H  N  H  T  L  P  L  S  A  T  A  M  A  S  T  T  S  A  A  A  S  M  L  L  S  G  S  S  N  S  S  D  P  N  P  Q  V  T  A  T  T  T  T  T  P  T  T  T  T  S  A  N  I  N  G  L  N  F  Y  L  S  D  T  S  K  H  H  K  S  P  Y  Y  F  P  N  S  S  I  S  A  S  A  P  N  S  L  P  T  I  T  L  D  L  T  S  T  S  S  S  S  P  S  S  L  S  H  L  N  R  M  T  Q  N  F  P  P  R  Y  N  Y  N  N  N  N  S  T  T  N  L  N </second_frame>
            <third_frame>   A  L  I  *  D  W  I  A  S  S  K  Q  R  Q  L  N  V  H  Q  *  I  I  V  R  R  I  A  *  M  I  F  K  L  I  R  M  K  M  K  R  R  R  I  K  I  S  R  R  *  E  I  M  E  M  E  M  M  F  R  N  K  T  L  L  K  E  L  G  F  L  L  E  S  D  V  M  P  L  R :   *  M  M  D  A  N  G  E  N  M  V  K  K  *  Q  K  E  I  H  A  L  E  L  T  I  V  A  P  *  H  Q  I  A  Q  L  E  S  R :   F  K  D  V  P  K  T  C  Q  Y  *  S  P  H  M  K  E  H  T  T  I  P  F  L  F  Q  P  P  Q  W  L  L  P  P  Q  R  P  L  A  C  C  Y  P  V  H  L  I  H  Q  T  Q  T  H  K  *  L  P  P  P  P  L  P  L  L  P  L  L  L  P  I  S  T  D  S  T  S  I  S  L  I  P  Q  N  I  I  N  R  H  I  T  F  L  I  H  P  S  Q  H  P  H  L  I  P  S  L  Q  L  H  S  I  *  L  P  P  R  P  R  P  R  P  P  Y  L  I  *  T  E  *  L  R  I  F  L  L  D  I  I  T  I  T  I  I  P  P  Q  T  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0128E05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5803" stop="6039"/>
                    <exon start="6191" stop="6304"/>
                    <exon start="6832" stop="7275"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>795</number_coding_nucleotides>
                  <number_encoded_amino_acids>265</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLDLGLDCKFETTPTECSPVNYSPENSLDDIQANKDENEETSNKNLKTMRNNGDGDDVSQQNPTKRARVSVRVRCDAPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPNCPVRKQVQRCAEDMSILITTYEGTHNHTLPLSATAMASTTSAAASMLLSGSSNSSDPNPQVTATTTTTPTTTTSANINGLNFYLSDTSKHHKSPYYFPNSSISASAPNSLPTITLDLTSTSSSSPSSLSHLNRMTQNFPPRYNYNNNNSTTNLN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="7385" PGL_stop="8058"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7385" e_stop="8058"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="7385" e_stop="8058" e_length="674"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7385" stop="8058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7474" stop="8035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396672" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGATCAAGTCAAGATAACATTTTCCAATCATATTTACAGAAAAATACTACACAATCTTCTTTACCACCAGACACAATTGCAGCTGCAACCAAAGCAATAACATCAGACCCAAATTTTCATTCCGCATTAGCTGCAGCTCTTACATCGATCATTGGAAATTCTCCAATTGAAAACAAATCCGTCCATAATTTAAATGTTACTGAGCCATTTCCAATTTTATCCAGTCTCCCTTCAAGCTCAAATCCGAATAAATGTTCGTCAAGTTTTTTAAATAAACCAACCTCTTCTGCTTCCGCGAATAATAATAATAATAGTAATAGTAATAGTAATAGTACACAGCAGCCTGGGAATAATAGCATGGTGTTTTTCGGGCAATCTTCTTCTTCGTTACCATTTTCGACGTCTAATAAGGGTAAATCTACCTCTCCTGGTGATAGTAAGTTTGATTGATTAATTTTTTTTTTCTTCATGTTTTACCTCTGAAATTGAACTTTGTAGTTAGAAGGATTAATCATCTGTATAGTCTGTAGATATGCTTTAGTGTCATTAACACAATTGACACTTTGGAATTAGCATTTGTAATTTGTTGTTGTTGATTAACTTGACTATGGTTGTAAGATTTTTGTACAAAATGTAGATTATTTATTTAGTAGATGGCTTATTTGCTTCTTT</gDNA_template>
            <first_frame> Q  D  Q  V  K  I  T  F  S  N  H  I  Y  R  K  I  L  H  N  L  L  Y  H  Q  T  Q  L  Q  L  Q  P  K  Q  *  H  Q  T  Q  I  F  I  P  H  *  L  Q  L  L  H  R  S  L  E  I  L  Q  L  K  T  N  P  S  I  I  *  M  L  L  S  H  F  Q  F  Y  P  V  S  L  Q  A  Q  I  R  I  N  V  R  Q  V  F  *  I  N  Q  P  L  L  L  P  R  I  I  I  I  I  V  I  V  I  V  I  V  H  S  S  L  G  I  I  A  W  C  F  S  G  N  L  L  L  R  Y  H  F  R  R  L  I  R  V  N  L  P  L  L  V  I  V  S  L  I  D  *  F  F  F  S  S  C  F  T  S  E  I  E  L  C  S  *  K  D  *  S  S  V  *  S  V  D  M  L  *  C  H  *  H  N  *  H  F  G  I  S  I  C  N  L  L  L  L  I  N  L  T  M  V  V  R  F  L  Y  K  M  *  I  I  Y  L  V  D  G  L  F  A  S   </first_frame>
            <second_frame>  K  I  K  S  R  *  H  F  P  I  I  F  T  E  K  Y  Y  T  I  F  F  T  T  R  H  N  C  S  C  N  Q  S  N  N  I  R  P  K  F  S  F  R  I  S  C  S  S  Y  I  D  H  W  K  F  S  N  *  K  Q  I  R  P  *  F  K  C  Y  *  A  I  S  N  F  I  Q  S  P  F  K  L  K  S  E  *  M  F  V  K  F  F  K  *  T  N  L  F  C  F  R  E  *  *  *  *  *  *  *  *  *  *  *  Y  T  A  A  W  E  *  *  H  G  V  F  R  A  I  F  F  F  V  T  I  F  D  V  *  *  G  *  I  Y  L  S  W  *  *  *  V  *  L  I  N  F  F  F  L  H  V  L  P  L  K  L  N  F  V  V  R  R  I  N  H  L  Y  S  L  *  I  C  F  S  V  I  N  T  I  D  T  L  E  L  A  F  V  I  C  C  C  *  L  T  *  L  W  L  *  D  F  C  T  K  C  R  L  F  I  *  *  M  A  Y  L  L  L  </second_frame>
            <third_frame>   R  S  S  Q  D  N  I  F  Q  S  Y  L  Q  K  N  T  T  Q  S  S  L  P  P  D  T  I  A  A  A  T  K  A  I  T  S  D  P  N  F  H  S  A  L  A  A  A  L  T  S  I  I  G  N  S  P  I  E  N  K  S  V  H  N  L  N  V  T  E  P  F  P  I  L  S  S  L  P  S  S  S  N  P  N  K  C  S  S  S  F  L  N  K  P  T  S  S  A  S  A  N  N  N  N  N  S  N  S  N  S  N  S  T  Q  Q  P  G  N  N  S  M  V  F  F  G  Q  S  S  S  S  L  P  F  S  T  S  N  K  G  K  S  T  S  P  G  D  S  K  F  D  *  L  I  F  F  F  F  M  F  Y  L  *  N  *  T  L  *  L  E  G  L  I  I  C  I  V  C  R  Y  A  L  V  S  L  T  Q  L  T  L  W  N  *  H  L  *  F  V  V  V  D  *  L  D  Y  G  C  K  I  F  V  Q  N  V  D  Y  L  F  S  R  W  L  I  C  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0128E05.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7387" stop="7836"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSSQDNIFQSYLQKNTTQSSLPPDTIAAATKAITSDPNFHSALAAALTSIIGNSPIENKSVHNLNVTEPFPILSSLPSSSNPNKCSSSFLNKPTSSASANNNNNSNSNSNSTQQPGNNSMVFFGQSSSSLPFSTSNKGKSTSPGDSKFD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="10885" PGL_stop="14336"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10885" e_stop="10972"/>
            <exon e_start="12978" e_stop="13111"/>
            <exon e_start="13230" e_stop="13255"/>
            <exon e_start="13799" e_stop="13888"/>
            <exon e_start="13981" e_stop="14069"/>
            <exon e_start="14332" e_stop="14336"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.872" e_score="1.000"/>
          <exon-intron don_prob="0.829" acc_prob="0.624" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.840" e_score="1.000"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10885" e_stop="10972" e_length="88"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="10973" i_stop="12977" i_length="2005"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12978" e_stop="13111" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.993">
            <gDNA_intron_boundary i_start="13112" i_stop="13229" i_length="118"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13230" e_stop="13255" e_length="26"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.872">
            <gDNA_intron_boundary i_start="13256" i_stop="13798" i_length="543"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13799" e_stop="13888" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.829" acc_prob="0.624">
            <gDNA_intron_boundary i_start="13889" i_stop="13980" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="13981" e_stop="14069" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.840">
            <gDNA_intron_boundary i_start="14070" i_stop="14331" i_length="262"/>
          </intron>
          <exon e_serial="6" e_score="0.600">
            <gDNA_exon_boundary e_start="14332" e_stop="14336" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10885" stop="10972"/>
              <exon start="12978" stop="13111"/>
              <exon start="13230" stop="13255"/>
              <exon start="13799" stop="13888"/>
              <exon start="13981" stop="14014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10888" stop="10972"/>
              <exon start="12978" stop="13111"/>
              <exon start="13230" stop="13255"/>
              <exon start="13799" stop="13888"/>
              <exon start="13981" stop="14069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10889" stop="10972"/>
              <exon start="12978" stop="13111"/>
              <exon start="13230" stop="13255"/>
              <exon start="13799" stop="13888"/>
              <exon start="13981" stop="13994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10889" stop="10972"/>
              <exon start="12978" stop="13111"/>
              <exon start="13230" stop="13250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10890" stop="10972"/>
              <exon start="12978" stop="13111"/>
              <exon start="13230" stop="13255"/>
              <exon start="13799" stop="13888"/>
              <exon start="13981" stop="14058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10890" stop="10972"/>
              <exon start="12978" stop="13111"/>
              <exon start="13230" stop="13255"/>
              <exon start="13799" stop="13854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10891" stop="10972"/>
              <exon start="12978" stop="13111"/>
              <exon start="13230" stop="13255"/>
              <exon start="13799" stop="13888"/>
              <exon start="13981" stop="14069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10893" stop="10972"/>
              <exon start="12978" stop="13111"/>
              <exon start="13230" stop="13255"/>
              <exon start="13799" stop="13888"/>
              <exon start="13981" stop="14069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10893" stop="10972"/>
              <exon start="12978" stop="13111"/>
              <exon start="13230" stop="13255"/>
              <exon start="13799" stop="13856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10894" stop="10972"/>
              <exon start="12978" stop="13111"/>
              <exon start="13230" stop="13255"/>
              <exon start="13799" stop="13888"/>
              <exon start="13981" stop="14069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10894" stop="10972"/>
              <exon start="12978" stop="13111"/>
              <exon start="13230" stop="13255"/>
              <exon start="13799" stop="13888"/>
              <exon start="13981" stop="14056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10895" stop="10972"/>
              <exon start="12978" stop="13111"/>
              <exon start="13230" stop="13255"/>
              <exon start="13799" stop="13888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10896" stop="10972"/>
              <exon start="12978" stop="13111"/>
              <exon start="13230" stop="13255"/>
              <exon start="13799" stop="13888"/>
              <exon start="13981" stop="14069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10896" stop="10972"/>
              <exon start="12978" stop="13111"/>
              <exon start="13230" stop="13252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10898" stop="10972"/>
              <exon start="12978" stop="13111"/>
              <exon start="13230" stop="13255"/>
              <exon start="13799" stop="13888"/>
              <exon start="13981" stop="14040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10910" stop="10972"/>
              <exon start="12978" stop="13111"/>
              <exon start="13230" stop="13255"/>
              <exon start="13799" stop="13888"/>
              <exon start="13981" stop="14069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10911" stop="10972"/>
              <exon start="12978" stop="13111"/>
              <exon start="13230" stop="13255"/>
              <exon start="13799" stop="13824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10912" stop="10972"/>
              <exon start="12978" stop="13111"/>
              <exon start="13230" stop="13255"/>
              <exon start="13799" stop="13888"/>
              <exon start="13981" stop="14042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10914" stop="10972"/>
              <exon start="12978" stop="13111"/>
              <exon start="13230" stop="13255"/>
              <exon start="13799" stop="13888"/>
              <exon start="13981" stop="14069"/>
              <exon start="14332" stop="14336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10933" stop="10972"/>
              <exon start="12978" stop="13111"/>
              <exon start="13230" stop="13255"/>
              <exon start="13799" stop="13888"/>
              <exon start="13981" stop="14069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10941" stop="10972"/>
              <exon start="12978" stop="13111"/>
              <exon start="13230" stop="13255"/>
              <exon start="13799" stop="13888"/>
              <exon start="13981" stop="14069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10947" stop="10972"/>
              <exon start="12978" stop="13111"/>
              <exon start="13230" stop="13255"/>
              <exon start="13799" stop="13888"/>
              <exon start="13981" stop="14060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12978" stop="13111"/>
              <exon start="13230" stop="13255"/>
              <exon start="13799" stop="13888"/>
              <exon start="13981" stop="14066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12983" stop="13111"/>
              <exon start="13230" stop="13255"/>
              <exon start="13799" stop="13888"/>
              <exon start="13981" stop="14069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13022" stop="13111"/>
              <exon start="13230" stop="13255"/>
              <exon start="13799" stop="13888"/>
              <exon start="13981" stop="14069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247284" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCGAACTCCAGGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTG : GTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGG : TCCTGATGACACTCCTTGGGATGGTG : GTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATA : TTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTACATCCATTCAG : CAATT</gDNA_template>
            <first_frame> C  E  L  Q  G  Q  L  R  E  N  T  K  H  R  T  L  A  R  N  P  T  S  P  P  C  Y  R  R  I   : G  G  Y  N  V  D  S  S  *  K  E  A  D  E  G  F  Q  E  V  A  A  G  P  S  C  W  Y  *  W  C  T  S  R  Q  Q  H  Y  A  L  E  C  R  D  I  W  :  S  *  *  H  S  L  G  W  W :   Y  V  Q  V  D  S  S  I  L  *  G  L  P  Q  Q  A  T  N  S  A  V  C  F  S  H  V  S  S  *  Y :   L  C  R  W  K  Y  M  F  G  Y  S  S  E  S  M  E  S  N  L  *  C  C  G  N  T  Y  I  H  S   : A  I </first_frame>
            <second_frame>  A  N  S  R  G  S  Y  E  R  T  Q  S  T  G  P  *  L  G  T  L  P  H  R  L  V  T  A  V  L  :  V  V  T  M  S  T  P  A  R  K  R  L  M  R  D  F  K  R  L  Q  Q  D  P  P  A  G  I  S  G  A  P  Q  D  N  N  I  M  L  W  N  A  V  I  F  G :   P  D  D  T  P  W  D  G   : G  T  F  K  L  T  L  Q  F  S  E  D  Y  P  N  K  P  P  T  V  R  F  V  S  R  M  F  H  P  N   : I  Y  A  D  G  S  I  C  L  D  I  L  Q  N  Q  W  S  P  I  Y  D  V  A  A  I  L  T  S  I  Q  :  Q   </second_frame>
            <third_frame>   R  T  P  G  A  A  T  R  E  H  K  A  Q  D  L  S  S  E  P  Y  L  T  A  L  L  P  P  Y  W :   W  L  Q  C  R  L  Q  L  E  R  G  *  *  G  I  S  R  G  C  S  R  T  L  L  L  V  L  V  V  H  L  K  T  T  T  L  C  F  G  M  P  *  Y  L   : V  L  M  T  L  L  G  M  V  :  V  R  S  S  *  L  F  N  S  L  R  I  T  P  T  S  H  Q  Q  C  G  L  F  L  A  C  F  I  L  I  :  F  M  Q  M  E  V  Y  V  W  I  F  F  R  I  N  G  V  Q  F  M  M  L  R  Q  Y  L  H  P  F  S :   N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0128E05.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10934" stop="10972"/>
                    <exon start="12978" stop="13111"/>
                    <exon start="13230" stop="13255"/>
                    <exon start="13799" stop="13888"/>
                    <exon start="13981" stop="14069"/>
                    <exon start="14332" stop="14334"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGTLPHRLVTAVLVVTMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="10888" e_stop="10972"/>
            <exon e_start="12978" e_stop="13111"/>
            <exon e_start="13230" e_stop="13888"/>
            <exon e_start="13981" e_stop="14109"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.829" acc_prob="0.624" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10888" e_stop="10972" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="10973" i_stop="12977" i_length="2005"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12978" e_stop="13111" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.993">
            <gDNA_intron_boundary i_start="13112" i_stop="13229" i_length="118"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13230" e_stop="13888" e_length="659"/>
          </exon>
          <intron i_serial="3" don_prob="0.829" acc_prob="0.624">
            <gDNA_intron_boundary i_start="13889" i_stop="13980" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="13981" e_stop="14109" e_length="129"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10888" stop="10972"/>
              <exon start="12978" stop="13111"/>
              <exon start="13230" stop="13684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10888" stop="10972"/>
              <exon start="12978" stop="13111"/>
              <exon start="13230" stop="13524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10889" stop="10972"/>
              <exon start="12978" stop="13111"/>
              <exon start="13230" stop="13250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10896" stop="10972"/>
              <exon start="12978" stop="13111"/>
              <exon start="13230" stop="13252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10898" stop="10972"/>
              <exon start="12978" stop="13111"/>
              <exon start="13230" stop="13506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10905" stop="10972"/>
              <exon start="12978" stop="13111"/>
              <exon start="13230" stop="13637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10905" stop="10972"/>
              <exon start="12978" stop="13111"/>
              <exon start="13230" stop="13578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13315" stop="13888"/>
              <exon start="13981" stop="14109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344525" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAACTCCAGGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTG : GTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGG : TCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTTCCAGTCCTGGCTTTCCAAGTCACTTTTGTATTATCATCTCTTGTCAGTTTATTACTCTCTGCCAAAAGTTAAGGTTGTTGGTGTTAGCAAGTGCGTCCTGTGGCTTTTGTTACCTTCGCCATCCTTTTCTTTTGACATAATATGATTTCTTTTTCATATCGCCTTAGTTTTGATATGAATTAATTAGTTCGGTTGTAACTATACTATTTGAGAACATCAGGTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATA : TTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTACATCCATTCAGGTATAGAACTGTAATTGATTTTTAGACATCACATTCTCTA</gDNA_template>
            <first_frame> E  L  Q  G  Q  L  R  E  N  T  K  H  R  T  L  A  R  N  P  T  S  P  P  C  Y  R  R  I   : G  G  Y  N  V  D  S  S  *  K  E  A  D  E  G  F  Q  E  V  A  A  G  P  S  C  W  Y  *  W  C  T  S  R  Q  Q  H  Y  A  L  E  C  R  D  I  W  :  S  *  *  H  S  L  G  W  W  *  V  I  L  A  F  G  R  *  C  S  V  A  E  E  C  *  R  L  K  A  L  *  L  V  H  I  Y  C  L  C  I  V  V  C  T  I  Q  L  C  F  N  H  L  S  L  S  F  L  *  F  E  I  L  N  N  Q  F  G  E  S  H  P  S  S  P  P  R  T  F  L  A  Y  E  *  V  V  M  N  V  M  N  H  L  I  E  V  M  H  I  L  V  L  E  M  L  E  S  F  L  *  S  P  S  P  S  I  S  S  P  G  F  P  S  H  F  C  I  I  I  S  C  Q  F  I  T  L  C  Q  K  L  R  L  L  V  L  A  S  A  S  C  G  F  C  Y  L  R  H  P  F  L  L  T  *  Y  D  F  F  F  I  S  P  *  F  *  Y  E  L  I  S  S  V  V  T  I  L  F  E  N  I  R  Y  V  Q  V  D  S  S  I  L  *  G  L  P  Q  Q  A  T  N  S  A  V  C  F  S  H  V  S  S  *  Y :   L  C  R  W  K  Y  M  F  G  Y  S  S  E  S  M  E  S  N  L  *  C  C  G  N  T  Y  I  H  S  G  I  E  L  *  L  I  F  R  H  H  I  L   </first_frame>
            <second_frame>  N  S  R  G  S  Y  E  R  T  Q  S  T  G  P  *  L  G  T  L  P  H  R  L  V  T  A  V  L  :  V  V  T  M  S  T  P  A  R  K  R  L  M  R  D  F  K  R  L  Q  Q  D  P  P  A  G  I  S  G  A  P  Q  D  N  N  I  M  L  W  N  A  V  I  F  G :   P  D  D  T  P  W  D  G  G  E  L  S  L  H  L  V  V  S  A  V  W  Q  K  N  V  K  G  L  K  R  C  S  W  C  T  S  T  V  Y  A  L  L  S  V  Q  F  N  Y  V  L  I  I  S  V  S  L  F  C  D  L  K  F  *  I  I  S  L  E  S  R  T  P  R  P  L  P  G  H  S  L  P  T  N  K  *  *  *  M  L  *  I  I  S  *  R  *  C  I  F  *  F  W  K  C  L  N  P  F  F  D  L  P  V  Q  A  F  P  V  L  A  F  Q  V  T  F  V  L  S  S  L  V  S  L  L  L  S  A  K  S  *  G  C  W  C  *  Q  V  R  P  V  A  F  V  T  F  A  I  L  F  F  *  H  N  M  I  S  F  S  Y  R  L  S  F  D  M  N  *  L  V  R  L  *  L  Y  Y  L  R  T  S  G  T  F  K  L  T  L  Q  F  S  E  D  Y  P  N  K  P  P  T  V  R  F  V  S  R  M  F  H  P  N   : I  Y  A  D  G  S  I  C  L  D  I  L  Q  N  Q  W  S  P  I  Y  D  V  A  A  I  L  T  S  I  Q  V  *  N  C  N  *  F  L  D  I  T  F  S  </second_frame>
            <third_frame>   T  P  G  A  A  T  R  E  H  K  A  Q  D  L  S  S  E  P  Y  L  T  A  L  L  P  P  Y  W :   W  L  Q  C  R  L  Q  L  E  R  G  *  *  G  I  S  R  G  C  S  R  T  L  L  L  V  L  V  V  H  L  K  T  T  T  L  C  F  G  M  P  *  Y  L   : V  L  M  T  L  L  G  M  V  V  S  Y  P  C  I  W  S  L  V  Q  C  G  R  R  M  L  K  A  *  S  V  V  V  G  A  H  L  L  F  M  H  C  C  L  Y  N  S  I  M  F  *  S  S  Q  S  L  F  S  V  I  *  N  S  E  *  S  V  W  R  V  A  P  L  V  P  S  Q  D  I  P  C  L  R  I  S  S  D  E  C  Y  E  S  S  H  R  G  D  A  Y  S  S  F  G  N  A  *  I  L  S  L  I  S  Q  S  K  H  F  Q  S  W  L  S  K  S  L  L  Y  Y  H  L  L  S  V  Y  Y  S  L  P  K  V  K  V  V  G  V  S  K  C  V  L  W  L  L  L  P  S  P  S  F  S  F  D  I  I  *  F  L  F  H  I  A  L  V  L  I  *  I  N  *  F  G  C  N  Y  T  I  *  E  H  Q  V  R  S  S  *  L  F  N  S  L  R  I  T  P  T  S  H  Q  Q  C  G  L  F  L  A  C  F  I  L  I  :  F  M  Q  M  E  V  Y  V  W  I  F  F  R  I  N  G  V  Q  F  M  M  L  R  Q  Y  L  H  P  F  R  Y  R  T  V  I  D  F  *  T  S  H  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0128E05.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10934" stop="10972"/>
                    <exon start="12978" stop="13111"/>
                    <exon start="13230" stop="13419"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGTLPHRLVTAVLVVTMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGELSLHLVVSAVWQKNVKGLKRCSWCTSTVYALLSVQFNYVLIISVSLFCDLKF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0128E05.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13777" stop="13888"/>
                    <exon start="13981" stop="14075"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYYLRTSGTFKLTLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="18067" PGL_stop="18907"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18067" e_stop="18907"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="18067" e_stop="18907" e_length="841"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18067" stop="18565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18067" stop="18431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18069" stop="18573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18071" stop="18492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18079" stop="18449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18080" stop="18563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18083" stop="18605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18083" stop="18589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18084" stop="18612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18117" stop="18507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18158" stop="18907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18158" stop="18358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18323" stop="18863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311729" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGCAATTAGTGTGTTTTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACGTCCTTAGCAGCGGCGTTTAGACCTGGATACGGAGCGTACATCGCTTCAAAAGCGGCCGTGGAAGCAATGGTGAAGATACTGGCGAAGGAACTGAAAGGGACAGGAATAACGGTGAATTGTGTGGCGCCGGGACCCATAGCGACGGAATTGTTCTACGAAGGGAAAACAGAGGCCATGATAAAGAGGGTGATTGATGATTGTCCACATGGAAGACTTGGCCTGCCGGAGGATATCGCGCCGGTGGTTGGGTTTTTGGCCGGCGACACTTCTGAATGGGTTAATGGACAGATCATTCGTGTCAATGGCGGCTTCATCTAATTTATTTATTTATTTATTTTGCCA</gDNA_template>
            <first_frame> *  Q  L  V  C  F  L  F  S  N  G  S  R  K  R  S  P  I  N  L  P  T  P  R  S  C  G  H  C  Y  R  F  F  S  R  N  R  Q  S  N  C  T  S  F  G  L  T  W  C  *  T  R  H  Q  L  F  L  Q  L  H  S  S  *  R  R  R  I  P  D  Q  F  H  L  R  L  P  T  C  H  C  G  Q  G  Q  Y  L  R  S  R  S  S  E  I  P  L  *  R  C  *  I  G  F  S  I  A  G  Q  H  P  G  K  L  R  R  G  T  R  R  K  I  P  V  N  P  K  H  N  P  R  G  F  R  Q  D  F  *  C  E  R  S  W  S  F  R  M  L  Q  G  R  C  *  E  N  Q  T  R  W  R  R  E  D  Y  M  L  I  D  V  L  S  S  G  V  *  T  W  I  R  S  V  H  R  F  K  S  G  R  G  S  N  G  E  D  T  G  E  G  T  E  R  D  R  N  N  G  E  L  C  G  A  G  T  H  S  D  G  I  V  L  R  R  E  N  R  G  H  D  K  E  G  D  *  *  L  S  T  W  K  T  W  P  A  G  G  Y  R  A  G  G  W  V  F  G  R  R  H  F  *  M  G  *  W  T  D  H  S  C  Q  W  R  L  H  L  I  Y  L  F  I  Y  F  A  </first_frame>
            <second_frame>  S  N  *  C  V  F  S  S  A  M  A  A  E  N  V  A  Q  S  T  F  P  L  Q  D  R  V  A  I  V  T  G  S  S  R  G  I  G  K  A  I  A  L  H  L  A  S  L  G  A  K  L  V  I  N  Y  S  S  N  S  T  Q  A  D  D  V  V  S  Q  I  N  S  T  S  G  Y  P  R  A  I  A  V  K  A  N  I  S  D  P  D  Q  V  K  S  L  F  D  A  A  E  S  A  F  Q  S  P  V  N  I  L  V  N  S  A  G  V  L  D  G  K  Y  P  S  I  L  N  T  T  L  E  D  F  D  R  T  F  D  V  N  A  R  G  A  F  V  C  C  K  E  G  A  K  R  I  K  H  G  G  G  G  R  I  I  C  L  S  T  S  L  A  A  A  F  R  P  G  Y  G  A  Y  I  A  S  K  A  A  V  E  A  M  V  K  I  L  A  K  E  L  K  G  T  G  I  T  V  N  C  V  A  P  G  P  I  A  T  E  L  F  Y  E  G  K  T  E  A  M  I  K  R  V  I  D  D  C  P  H  G  R  L  G  L  P  E  D  I  A  P  V  V  G  F  L  A  G  D  T  S  E  W  V  N  G  Q  I  I  R  V  N  G  G  F  I  *  F  I  Y  L  F  I  L  P </second_frame>
            <third_frame>   A  I  S  V  F  S  L  Q  Q  W  Q  Q  K  T  *  P  N  Q  P  S  H  S  K  I  V  W  P  L  L  P  V  L  L  A  E  S  A  K  Q  L  H  F  I  W  P  H  L  V  L  N  S  S  S  T  I  P  P  T  P  L  K  L  T  T  S  Y  P  R  S  I  P  P  P  V  T  H  V  P  L  R  S  R  P  I  S  Q  I  Q  I  K  *  N  P  S  L  T  L  L  N  R  L  F  N  R  R  S  T  S  W  *  T  P  P  G  Y  S  T  E  N  T  R  Q  S  *  T  Q  P  *  R  I  S  T  G  L  L  M  *  T  L  V  E  L  S  Y  A  A  R  K  V  L  R  E  S  N  T  V  E  E  G  G  L  Y  A  Y  R  R  P  *  Q  R  R  L  D  L  D  T  E  R  T  S  L  Q  K  R  P  W  K  Q  W  *  R  Y  W  R  R  N  *  K  G  Q  E  *  R  *  I  V  W  R  R  D  P  *  R  R  N  C  S  T  K  G  K  Q  R  P  *  *  R  G  *  L  M  I  V  H  M  E  D  L  A  C  R  R  I  S  R  R  W  L  G  F  W  P  A  T  L  L  N  G  L  M  D  R  S  F  V  S  M  A  A  S  S  N  L  F  I  Y  L  F  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0128E05.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18077" stop="18883"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CVFSSAMAAENVAQSTFPLQDRVAIVTGSSRGIGKAIALHLASLGAKLVINYSSNSTQADDVVSQINSTSGYPRAIAVKANISDPDQVKSLFDAAESAFQSPVNILVNSAGVLDGKYPSILNTTLEDFDRTFDVNARGAFVCCKEGAKRIKHGGGGRIICLSTSLAAAFRPGYGAYIASKAAVEAMVKILAKELKGTGITVNCVAPGPIATELFYEGKTEAMIKRVIDDCPHGRLGLPEDIAPVVGFLAGDTSEWVNGQIIRVNGGFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="18833" PGL_stop="18384"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18833" e_stop="18384"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18833" e_stop="18384" e_length="450"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18833" stop="18384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336228" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGTGTCGCCGGCCAAAAACCCAACCACCGGCGCGATATCCTCCGGCAGGCCAAGTCTTCCATGTGGACAATCATCAATCACCCTCTTTATCATGGCCTCTGTTTTCCCTTCGTAGAACAATTCCGTCGCTATGGGTCCCGGCGCCACACAATTCACCGTTATTCCTGTCCCTTTCAGTTCCTTCGCCAGTATCTTCACCATTGCTTCCACGGCCGCTTTTGAAGCGATGTACGCTCCGTATCCAGGTCTAAACGCCGCTGCTAAGGACGTCGATAAGCATATAATCCTCCCTCCTCCACCGTGTTTGATTCTCTTAGCACCTTCCTTGCAGCATACGAAAGCTCCACGAGCGTTCACATCAAAAGTCCTGTCGAAATCCTCTAGGGTTGTGTTTAGGATTGACGGGTATTTTCCGTCGAGTACCCCGGCGGAGTTTACCAGGATGTTGA</gDNA_template>
            <first_frame> K  C  R  R  P  K  T  Q  P  P  A  R  Y  P  P  A  G  Q  V  F  H  V  D  N  H  Q  S  P  S  L  S  W  P  L  F  S  L  R  R  T  I  P  S  L  W  V  P  A  P  H  N  S  P  L  F  L  S  L  S  V  P  S  P  V  S  S  P  L  L  P  R  P  L  L  K  R  C  T  L  R  I  Q  V  *  T  P  L  L  R  T  S  I  S  I  *  S  S  L  L  H  R  V  *  F  S  *  H  L  P  C  S  I  R  K  L  H  E  R  S  H  Q  K  S  C  R  N  P  L  G  L  C  L  G  L  T  G  I  F  R  R  V  P  R  R  S  L  P  G  C  * </first_frame>
            <second_frame>  S  V  A  G  Q  K  P  N  H  R  R  D  I  L  R  Q  A  K  S  S  M  W  T  I  I  N  H  P  L  Y  H  G  L  C  F  P  F  V  E  Q  F  R  R  Y  G  S  R  R  H  T  I  H  R  Y  S  C  P  F  Q  F  L  R  Q  Y  L  H  H  C  F  H  G  R  F  *  S  D  V  R  S  V  S  R  S  K  R  R  C  *  G  R  R  *  A  Y  N  P  P  S  S  T  V  F  D  S  L  S  T  F  L  A  A  Y  E  S  S  T  S  V  H  I  K  S  P  V  E  I  L  *  G  C  V  *  D  *  R  V  F  S  V  E  Y  P  G  G  V  Y  Q  D  V   </second_frame>
            <third_frame>   V  S  P  A  K  N  P  T  T  G  A  I  S  S  G  R  P  S  L  P  C  G  Q  S  S  I  T  L  F  I  M  A  S  V  F  P  S  *  N  N  S  V  A  M  G  P  G  A  T  Q  F  T  V  I  P  V  P  F  S  S  F  A  S  I  F  T  I  A  S  T  A  A  F  E  A  M  Y  A  P  Y  P  G  L  N  A  A  A  K  D  V  D  K  H  I  I  L  P  P  P  P  C  L  I  L  L  A  P  S  L  Q  H  T  K  A  P  R  A  F  T  S  K  V  L  S  K  S  S  R  V  V  F  R  I  D  G  Y  F  P  S  S  T  P  A  E  F  T  R  M  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0128E05.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18717" stop="18385"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNSVAMGPGATQFTVIPVPFSSFASIFTIASTAAFEAMYAPYPGLNAAAKDVDKHIILPPPPCLILLAPSLQHTKAPRAFTSKVLSKSSRVVFRIDGYFPSSTPAEFTRML</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0128E05.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18833" stop="18582"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KCRRPKTQPPARYPPAGQVFHVDNHQSPSLSWPLFSLRRTIPSLWVPAPHNSPLFLSLSVPSPVSSPLLPRPLLKRCTLRIQV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="21432" PGL_stop="22409"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21432" e_stop="22409"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="21432" e_stop="22409" e_length="978"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21432" stop="22082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21432" stop="22069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21513" stop="22313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21724" stop="22409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372804" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACTTTTCGTTTGTTTATCCACAAAATTCCATTTTCTAGCAATTTCAGTGCTTTTCTTCAGTGATCATGGCGGAAACAAACGTAGCCCAAGGCCAAAGCCTCGGGAATCGTGTAGCCATTGTTACCGGCTCTTCTCGCGGAATCGGCAAAGCAATTGCTCTTCACTTGGCCTCTCTCGGAGCTAAACTCGTCATCAACTACACTTCCAACTCTACTCAAGCTGACGACGTCGTATCCCAAATCAATTCCACCTCCGATTCCCCACGCGCAATCGCCGTCAAAGCCAATGTCTCCGATCCAAATCAAGTCAAATCCCTCTTCGACGCTGCAGAATCAGCCTTTCAATCGCCGGTCAACATCCTCGTCAATTGCGCCGGCGTACTCGACGGGAAATACCCGTCGATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTCGATGTGAACGTGCGTGGAGCTTTCATATGCTGCAAAGAAGGCGCTAATAGAATCAAGCGCGGAGGAGGCGGAAGGATTATATGCTTAACGTCGTCGATGGCGGTGGCGTTGAGGCCCGGATTCGGGGCGTACGCGGCGTCAAAGGCGGCCGTGGAAGCAATGGTGAAAATACTGGCGAAAGAACTGAAAGGGACAGGGATAACGGTGAATTGTGCGGCGCCGGGACCCATTGCAACGGATATGTTTTACGAAGGGAAAACGGAGGAGATGATTAAGAAGGCGATTGATGAGTGTCCACATGGAAGGCTTGGACTGCCGGAGGATGTGGCGCCGGTGGTTGGGTTTTTAGCCGGCGATGCTTCTGAATGGGTTAATGGACAGATTATTCGTGTCAATGGCGGTTATATTTGATACTAGTATATGTTCGTTTTATTTCGTTTTTTATTTGGCATTTCCTTTGAAATATTGTTATAATCAATATTTTTAACCTGAAATAAGGTAAAAATTAAATAATACAGTTCAATTTGAAGTCTAAAT</gDNA_template>
            <first_frame> H  F  S  F  V  Y  P  Q  N  S  I  F  *  Q  F  Q  C  F  S  S  V  I  M  A  E  T  N  V  A  Q  G  Q  S  L  G  N  R  V  A  I  V  T  G  S  S  R  G  I  G  K  A  I  A  L  H  L  A  S  L  G  A  K  L  V  I  N  Y  T  S  N  S  T  Q  A  D  D  V  V  S  Q  I  N  S  T  S  D  S  P  R  A  I  A  V  K  A  N  V  S  D  P  N  Q  V  K  S  L  F  D  A  A  E  S  A  F  Q  S  P  V  N  I  L  V  N  C  A  G  V  L  D  G  K  Y  P  S  I  L  N  T  T  L  E  D  F  D  R  T  F  D  V  N  V  R  G  A  F  I  C  C  K  E  G  A  N  R  I  K  R  G  G  G  G  R  I  I  C  L  T  S  S  M  A  V  A  L  R  P  G  F  G  A  Y  A  A  S  K  A  A  V  E  A  M  V  K  I  L  A  K  E  L  K  G  T  G  I  T  V  N  C  A  A  P  G  P  I  A  T  D  M  F  Y  E  G  K  T  E  E  M  I  K  K  A  I  D  E  C  P  H  G  R  L  G  L  P  E  D  V  A  P  V  V  G  F  L  A  G  D  A  S  E  W  V  N  G  Q  I  I  R  V  N  G  G  Y  I  *  Y  *  Y  M  F  V  L  F  R  F  L  F  G  I  S  F  E  I  L  L  *  S  I  F  L  T  *  N  K  V  K  I  K  *  Y  S  S  I  *  S  L  N </first_frame>
            <second_frame>  T  F  R  L  F  I  H  K  I  P  F  S  S  N  F  S  A  F  L  Q  *  S  W  R  K  Q  T  *  P  K  A  K  A  S  G  I  V  *  P  L  L  P  A  L  L  A  E  S  A  K  Q  L  L  F  T  W  P  L  S  E  L  N  S  S  S  T  T  L  P  T  L  L  K  L  T  T  S  Y  P  K  S  I  P  P  P  I  P  H  A  Q  S  P  S  K  P  M  S  P  I  Q  I  K  S  N  P  S  S  T  L  Q  N  Q  P  F  N  R  R  S  T  S  S  S  I  A  P  A  Y  S  T  G  N  T  R  R  S  *  T  Q  P  *  R  I  S  T  G  L  S  M  *  T  C  V  E  L  S  Y  A  A  K  K  A  L  I  E  S  S  A  E  E  A  E  G  L  Y  A  *  R  R  R  W  R  W  R  *  G  P  D  S  G  R  T  R  R  Q  R  R  P  W  K  Q  W  *  K  Y  W  R  K  N  *  K  G  Q  G  *  R  *  I  V  R  R  R  D  P  L  Q  R  I  C  F  T  K  G  K  R  R  R  *  L  R  R  R  L  M  S  V  H  M  E  G  L  D  C  R  R  M  W  R  R  W  L  G  F  *  P  A  M  L  L  N  G  L  M  D  R  L  F  V  S  M  A  V  I  F  D  T  S  I  C  S  F  Y  F  V  F  Y  L  A  F  P  L  K  Y  C  Y  N  Q  Y  F  *  P  E  I  R  *  K  L  N  N  T  V  Q  F  E  V  *   </second_frame>
            <third_frame>   L  F  V  C  L  S  T  K  F  H  F  L  A  I  S  V  L  F  F  S  D  H  G  G  N  K  R  S  P  R  P  K  P  R  E  S  C  S  H  C  Y  R  L  F  S  R  N  R  Q  S  N  C  S  S  L  G  L  S  R  S  *  T  R  H  Q  L  H  F  Q  L  Y  S  S  *  R  R  R  I  P  N  Q  F  H  L  R  F  P  T  R  N  R  R  Q  S  Q  C  L  R  S  K  S  S  Q  I  P  L  R  R  C  R  I  S  L  S  I  A  G  Q  H  P  R  Q  L  R  R  R  T  R  R  E  I  P  V  D  P  K  H  N  P  R  G  F  R  Q  D  F  R  C  E  R  A  W  S  F  H  M  L  Q  R  R  R  *  *  N  Q  A  R  R  R  R  K  D  Y  M  L  N  V  V  D  G  G  G  V  E  A  R  I  R  G  V  R  G  V  K  G  G  R  G  S  N  G  E  N  T  G  E  R  T  E  R  D  R  D  N  G  E  L  C  G  A  G  T  H  C  N  G  Y  V  L  R  R  E  N  G  G  D  D  *  E  G  D  *  *  V  S  T  W  K  A  W  T  A  G  G  C  G  A  G  G  W  V  F  S  R  R  C  F  *  M  G  *  W  T  D  Y  S  C  Q  W  R  L  Y  L  I  L  V  Y  V  R  F  I  S  F  F  I  W  H  F  L  *  N  I  V  I  I  N  I  F  N  L  K  *  G  K  N  *  I  I  Q  F  N  L  K  S  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0128E05.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
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              <exon start="29062" stop="28920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30328" stop="30277"/>
              <exon start="29695" stop="29535"/>
              <exon start="29062" stop="28877"/>
              <exon start="28796" stop="28624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29695" stop="29535"/>
              <exon start="29062" stop="28877"/>
              <exon start="28796" stop="28614"/>
              <exon start="28529" stop="28518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29589" stop="29535"/>
              <exon start="29062" stop="28877"/>
              <exon start="28796" stop="28614"/>
              <exon start="28529" stop="28391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29576" stop="29535"/>
              <exon start="29062" stop="28877"/>
              <exon start="28796" stop="28614"/>
              <exon start="28529" stop="28471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29062" stop="28877"/>
              <exon start="28796" stop="28614"/>
              <exon start="28529" stop="28351"/>
              <exon start="28091" stop="27725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29046" stop="28877"/>
              <exon start="28796" stop="28614"/>
              <exon start="28529" stop="28351"/>
              <exon start="28091" stop="27837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29029" stop="28877"/>
              <exon start="28796" stop="28614"/>
              <exon start="28529" stop="28351"/>
              <exon start="28091" stop="27778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28989" stop="28877"/>
              <exon start="28796" stop="28614"/>
              <exon start="28529" stop="28351"/>
              <exon start="28091" stop="27962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28970" stop="28877"/>
              <exon start="28796" stop="28614"/>
              <exon start="28529" stop="28351"/>
              <exon start="28091" stop="27991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28966" stop="28877"/>
              <exon start="28796" stop="28614"/>
              <exon start="28529" stop="28433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28916" stop="28877"/>
              <exon start="28796" stop="28614"/>
              <exon start="28529" stop="28520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28888" stop="28877"/>
              <exon start="28796" stop="28614"/>
              <exon start="28529" stop="28351"/>
              <exon start="28091" stop="27645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28707" stop="28614"/>
              <exon start="28529" stop="28351"/>
              <exon start="28091" stop="27709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28701" stop="28614"/>
              <exon start="28529" stop="28351"/>
              <exon start="28091" stop="27709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28701" stop="28614"/>
              <exon start="28529" stop="28351"/>
              <exon start="28091" stop="27737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28700" stop="28614"/>
              <exon start="28529" stop="28351"/>
              <exon start="28091" stop="27709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28676" stop="28614"/>
              <exon start="28529" stop="28351"/>
              <exon start="28091" stop="27725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28438" stop="28351"/>
              <exon start="28091" stop="27748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28438" stop="28351"/>
              <exon start="28091" stop="27914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28414" stop="28351"/>
              <exon start="28091" stop="27737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28414" stop="28351"/>
              <exon start="28091" stop="27737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28414" stop="28351"/>
              <exon start="28091" stop="27737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28414" stop="28351"/>
              <exon start="28091" stop="27737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28414" stop="28351"/>
              <exon start="28091" stop="27737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738495" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTCTGTTTTGGATTTGGTGGGCGATTTACCAATCTTATTTCTGGACCCGAGAAAAATCCTATCTTTCTTTG : GAAGAGAGGAAATTGAGCAAGATGGGGGAGAAACCTGAGGTGTTAGATGCTGTATTAAAGGAGACTGTGGATTTG : GAGAATATACCCATTGAAGAAGTTTTTGAAAATTTGAGATGTACCAAAGAGGGTCTTACTGGTACAGCTGCCCAAGAAAGGTTGGCAATTTTTGGGTACAACAAACTAGAGGAGAAGAAG : GAGAGCAAATTCTTGAAATTTCTGGGGTTTATGTGGAACCCCCTCTCATGGGTTATGGAAGCTGCTGCTATTATGGCAATTGCTCTTGCAAATGGAGGA : GGAAAGCCTCCGGATTGGCAAGATTTTGTGGGTATTATTACCTTGCTAGTGATTAACTCAACAATTAGTTTTATTGAGGAGAATAATGCTGGCAATGCAGCAGCTGCTCTCATGGCTCGTCTCGCTCCTAAAGCCAAG : GTTCTTCGAGATGGAAAATGGAATGAAGAAGATGCTGCTGTTCTTGTTCCTGGGGACATTATCAGTATTAAACTGGGAGATATTATTCCTGCAGATGCTCGTCTTCTTGAAGGTGATCCCCTGAAAATTGACCAG : TCTGCTTTGACTGGTGAATCTCTTCCTGTAACTAAAGGTCCTGGAGATGGTGTCTACTCTGGTTCTACCTGTAAGCAGGGAGAGATAGAAGCTGTCGTCATCGCCACTGGGGTTCATACCTTTTTTGGGAAGGCTGCACACCTTGTTGACAGTACAAATCAAGTGGGACACTTCCAAAAG : GTTTTGACTGCTATTGGAAACTTCTGCATCTGTTCTATTGCAGTGGGGATGATAATAGAGATCATTGTGATGTACCCTATCCAACACCGCAAATATCGCCCTGGGATTGACAATCTTCTTGTCCTTCTCATTGGTGGAATTCCAATTGCCATGCCAACGGTTCTTTCAGTCACGATGGCAATTGGATCTCATCGGCTCGCTCAACAG : GGTGCTATTACGAAAAGAATGACAGCTATTGAGGAGATGGCTGGTATGGACGTGCTTTGTAGTGACAAGACAGGGACCCTTACACTAAACAAGCTTACTGTTGACAAAAACCTTGTTGAG : GTTTTTGCCAAAGGTGTTGACGCAGATACTGTCGTTCTGATGGCAGCTCGAGCGTCTCGTACAGAGAACCAGGATGCCATTGACACTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAG : GCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAG : ATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAG : GAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAG : GGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTG : AGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACG : ATATATGCTGTTTCCATCACAATCCGTATTGTG : CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACG : GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG : CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG : GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG : ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG : GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGAGTTTTTATTTCATGGTTTAGCAGCATCTGGTTTTTGTACTGCTTCTCTCTATTCATTGATTAAAGAAGTTTGGCTTTTTT</gDNA_template>
            <first_frame> T  L  F  W  I  W  W  A  I  Y  Q  S  Y  F  W  T  R  E  K  S  Y  L  S  L  :  E  E  R  K  L  S  K  M  G  E  K  P  E  V  L  D  A  V  L  K  E  T  V  D  L  :  E  N  I  P  I  E  E  V  F  E  N  L  R  C  T  K  E  G  L  T  G  T  A  A  Q  E  R  L  A  I  F  G  Y  N  K  L  E  E  K  K  :  E  S  K  F  L  K  F  L  G  F  M  W  N  P  L  S  W  V  M  E  A  A  A  I  M  A  I  A  L  A  N  G  G  :  G  K  P  P  D  W  Q  D  F  V  G  I  I  T  L  L  V  I  N  S  T  I  S  F  I  E  E  N  N  A  G  N  A  A  A  A  L  M  A  R  L  A  P  K  A  K  :  V  L  R  D  G  K  W  N  E  E  D  A  A  V  L  V  P  G  D  I  I  S  I  K  L  G  D  I  I  P  A  D  A  R  L  L  E  G  D  P  L  K  I  D  Q  :  S  A  L  T  G  E  S  L  P  V  T  K  G  P  G  D  G  V  Y  S  G  S  T  C  K  Q  G  E  I  E  A  V  V  I  A  T  G  V  H  T  F  F  G  K  A  A  H  L  V  D  S  T  N  Q  V  G  H  F  Q  K  :  V  L  T  A  I  G  N  F  C  I  C  S  I  A  V  G  M  I  I  E  I  I  V  M  Y  P  I  Q  H  R  K  Y  R  P  G  I  D  N  L  L  V  L  L  I  G  G  I  P  I  A  M  P  T  V  L  S  V  T  M  A  I  G  S  H  R  L  A  Q  Q  :  G  A  I  T  K  R  M  T  A  I  E  E  M  A  G  M  D  V  L  C  S  D  K  T  G  T  L  T  L  N  K  L  T  V  D  K  N  L  V  E  :  V  F  A  K  G  V  D  A  D  T  V  V  L  M  A  A  R  A  S  R  T  E  N  Q  D  A  I  D  T  A  I  V  G  M  L  S  D  P  K  E  :  A  R  A  G  I  R  E  I  H  F  L  P  F  N  P  T  D  K  R  T  A  L  T  Y  L  D  G  E  G  K  M  H  R  V  S  K  G  A  P  E  Q  :  I  L  N  L  A  H  N  K  S  D  I  E  R  R  V  H  A  V  I  D  K  F  A  E  R  G  L  R  S  L  G  V  A  Y  Q  :  E  V  P  E  G  R  K  E  S  S  G  G  P  W  Q  F  I  G  L  L  P  L  F  D  P  P  R  H  D  S  A  E  T  I  R  R  A  L  N  L  G  V  N  V  K  M  I  T   : G  D  Q  L  A  I  G  K  E  T  G  R  R  L  G  M  G  T  N  M  Y  P  S  S  A  L  L  G  Q  T  K  D  E  S  I  A  S  L  P  I  D  E  L  I  E  K  A  D  G  F  A  G  V  F  P   : E  H  K  Y  E  I  V  K  R  L  Q  A  R  K  H  I  C  G  M  T  G  D  G  V  N  D  A  P  A  L  K  K  A  D  I  G  I  A  V  D  D  A  T  D  A  A  R  S  A  S  D  I  V  L  T  E  P  G  L  S  V  I  I  S  A  V  L  T  S  R  A  I  F  Q  R  M  K  N  Y  T  :  I  Y  A  V  S  I  T  I  R  I  V  :  L  G  F  M  L  L  A  L  I  W  K  F  D  F  P  P  F  M  V  L  I  I  A  I  L  N  D   : G  T  I  M  T  I  S  K  D  R  V  K  P  S  P  L  P  D  S  W  K  L  A  E  I  F  T  T  G  V  V  L  G  G  Y  L  A  M  M  T  V  I  F  F  W  A  A  Y  E  T  D  F  F  P  :  R  V  F  G  V  S  T  L  Q  R  T  A  T  D  D  F  R  K  L  A  S  A  I  Y  L  Q  V  S  T  I  S  Q  A  L  I  F  V  T  R  S  R  S  W  S  F  V  E  R  P  G  L  L  L  V  V  A  F  L  I  A  Q  L  :  V  A  T  L  I  A  V  Y  A  S  W  S  F  A  A  I  E  G  I  G  W  G  W  A  G  V  I  W  L  Y  N  L  V  F  Y  F  P  L  D  I  I  K  F  L  I  R  Y  A  L  S  G  R  A  W  D  L  V  L  E  Q  R  :  I  A  F  T  R  K  K  D  F  G  K  E  Q  R  E  L  Q  W  A  H  A  Q  R  T  L  H  G  L  Q  V  P  D  T  K  L  F  S  E  A  T  N  F  N  E  L  N  Q  L  A  E  E  A  K  R  R  A  E  I  A  R :   Q  R  E  L  H  T  L  K  G  H  V  E  S  V  V  K  L  K  G  L  D  I  E  T  I  Q  Q  S  Y  T  V  *  C  G  S  K  Y  D  *  C  Y  L  T  G  E  W  V  I  E  *  R  H  N  E  C  V  S  Y  L  W  S  D  K  F  I  V  V  T  S  S  A  F  K  S  A  L  Y  I  L  Y  I  F  L  L  *  I  L  G  S  S  F  P  A  F  M  S  *  L  H  Y  I  Y  Y  N  *  P  R  M  N  I  K  L  *  Q  H  S  L  S  I  F  S  R  V  F  I  S  W  F  S  S  I  W  F  L  Y  C  F  S  L  F  I  D  *  R  S  L  A  F   </first_frame>
            <second_frame>  L  C  F  G  F  G  G  R  F  T  N  L  I  S  G  P  E  K  N  P  I  F  L  W :   K  R  G  N  *  A  R  W  G  R  N  L  R  C  *  M  L  Y  *  R  R  L  W  I  W :   R  I  Y  P  L  K  K  F  L  K  I  *  D  V  P  K  R  V  L  L  V  Q  L  P  K  K  G  W  Q  F  L  G  T  T  N  *  R  R  R  R :   R  A  N  S  *  N  F  W  G  L  C  G  T  P  S  H  G  L  W  K  L  L  L  L  W  Q  L  L  L  Q  M  E  E :   E  S  L  R  I  G  K  I  L  W  V  L  L  P  C  *  *  L  T  Q  Q  L  V  L  L  R  R  I  M  L  A  M  Q  Q  L  L  S  W  L  V  S  L  L  K  P  R :   F  F  E  M  E  N  G  M  K  K  M  L  L  F  L  F  L  G  T  L  S  V  L  N  W  E  I  L  F  L  Q  M  L  V  F  L  K  V  I  P  *  K  L  T  S :   L  L  *  L  V  N  L  F  L  *  L  K  V  L  E  M  V  S  T  L  V  L  P  V  S  R  E  R  *  K  L  S  S  S  P  L  G  F  I  P  F  L  G  R  L  H  T  L  L  T  V  Q  I  K  W  D  T  S  K  R :   F  *  L  L  L  E  T  S  A  S  V  L  L  Q  W  G  *  *  *  R  S  L  *  C  T  L  S  N  T  A  N  I  A  L  G  L  T  I  F  L  S  F  S  L  V  E  F  Q  L  P  C  Q  R  F  F  Q  S  R  W  Q  L  D  L  I  G  S  L  N  R :   V  L  L  R  K  E  *  Q  L  L  R  R  W  L  V  W  T  C  F  V  V  T  R  Q  G  P  L  H  *  T  S  L  L  L  T  K  T  L  L  R :   F  L  P  K  V  L  T  Q  I  L  S  F  *  W  Q  L  E  R  L  V  Q  R  T  R  M  P  L  T  L  L  L  L  G  C  C  L  T  R  R  R :   L  V  L  A  F  V  K  Y  T  F  F  L  S  I  Q  L  T  S  V  Q  R  L  L  I  L  M  V  K  E  K  C  T  G  S  A  K  G  H  Q  S  R :   S  *  I  L  H  T  T  S  Q  T  *  N  V  E  F  M  R  *  L  I  S  L  L  R  G  V  C  A  H  L  V  W  P  T  R :   K  F  Q  R  E  G  R  R  V  P  E  D  H  G  N  S  L  V  S  C  L  C  L  I  L  Q  D  T  T  V  L  R  L  *  G  G  L  *  I  L  E  *  M  L  K  *  S  Q  :  G  I  N  W  L  *  E  K  K  Q  G  V  V  W  E  W  E  P  T  C  I  L  H  L  L  C  W  G  R  L  R  M  N  Q  L  L  L  Y  Q  L  M  N  *  *  K  R  L  M  V  L  L  E  Y  S  L  :  S  T  N  M  R  L  *  N  A  C  K  L  G  S  I  S  V  E  *  L  E  M  E  S  M  T  L  L  L  *  R  R  L  I  L  G  *  L  L  M  M  P  L  M  L  L  V  V  L  L  T  L  F  L  L  N  L  V  S  V  S  S  L  V  L  F  *  L  V  E  Q  S  F  K  G  *  K  T  I  R :   Y  M  L  F  P  S  Q  S  V  L  C :   L  V  L  C  F  W  P  L  S  G  S  L  T  F  H  L  S  W  C  L  S  L  Q  S  S  M  T  :  V  P  L  *  Q  Y  Q  R  I  G  S  N  H  L  L  C  L  I  V  G  S  W  L  R  F  S  L  L  G  L  F  L  V  A  T  W  Q  *  *  Q  S  F  S  F  G  Q  H  M  R  Q  I  S  S  R :   V  Y  L  G  Y  Q  H  F  R  G  Q  Q  L  M  T  S  G  N  L  H  Q  Q  F  T  F  K  *  A  L  S  V  R  P  *  Y  L  S  Q  D  L  E  V  G  R  L  L  S  V  L  V  C  C  L  W  L  L  F  *  L  L  N  W :   L  P  P  *  L  L  F  M  Q  V  G  A  L  L  Q  S  K  E  L  A  G  V  G  Q  E  *  S  G  S  T  I  *  Y  S  T  S  R  L  I  S  S  S  S  *  S  D  M  L  S  V  E  G  P  G  I  L  F  L  S  K  G :   L  L  S  P  G  R  R  I  S  E  K  N  N  V  S  F  N  G  P  T  H  R  G  P  F  M  G  C  K  F  L  T  P  N  C  L  V  K  L  P  I  S  M  S  L  I  S  *  L  R  K  Q  R  G  E  L  K  S  L   : G  N  V  S  C  T  H  L  K  V  T  W  N  Q  W  *  S  *  R  V  L  T  *  R  Q  F  S  S  H  T  L  F  D  V  G  A  S  M  T  S  A  T  *  L  V  S  G  *  *  N  E  D  I  M  S  V  *  V  T  S  G  A  T  S  S  *  *  *  H  L  Q  R  L  K  V  P  Y  I  F  Y  T  F  F  C  F  E  F  L  V  H  L  F  L  L  S  C  L  D  Y  I  I  Y  I  T  I  D  Q  E  *  I  L  S  Y  N  S  I  H  Y  L  Y  S  Q  E  F  L  F  H  G  L  A  A  S  G  F  C  T  A  S  L  Y  S  L  I  K  E  V  W  L  F  </second_frame>
            <third_frame>   S  V  L  D  L  V  G  D  L  P  I  L  F  L  D  P  R  K  I  L  S  F  F   : G  R  E  E  I  E  Q  D  G  G  E  T  *  G  V  R  C  C  I  K  G  D  C  G  F   : G  E  Y  T  H  *  R  S  F  *  K  F  E  M  Y  Q  R  G  S  Y  W  Y  S  C  P  R  K  V  G  N  F  W  V  Q  Q  T  R  G  E  E   : G  E  Q  I  L  E  I  S  G  V  Y  V  E  P  P  L  M  G  Y  G  S  C  C  Y  Y  G  N  C  S  C  K  W  R   : R  K  A  S  G  L  A  R  F  C  G  Y  Y  Y  L  A  S  D  *  L  N  N  *  F  Y  *  G  E  *  C  W  Q  C  S  S  C  S  H  G  S  S  R  S  *  S  Q   : G  S  S  R  W  K  M  E  *  R  R  C  C  C  S  C  S  W  G  H  Y  Q  Y  *  T  G  R  Y  Y  S  C  R  C  S  S  S  *  R  *  S  P  E  N  *  P   : V  C  F  D  W  *  I  S  S  C  N  *  R  S  W  R  W  C  L  L  W  F  Y  L  *  A  G  R  D  R  S  C  R  H  R  H  W  G  S  Y  L  F  W  E  G  C  T  P  C  *  Q  Y  K  S  S  G  T  L  P  K   : G  F  D  C  Y  W  K  L  L  H  L  F  Y  C  S  G  D  D  N  R  D  H  C  D  V  P  Y  P  T  P  Q  I  S  P  W  D  *  Q  S  S  C  P  S  H  W  W  N  S  N  C  H  A  N  G  S  F  S  H  D  G  N  W  I  S  S  A  R  S  T   : G  C  Y  Y  E  K  N  D  S  Y  *  G  D  G  W  Y  G  R  A  L  *  *  Q  D  R  D  P  Y  T  K  Q  A  Y  C  *  Q  K  P  C  *   : G  F  C  Q  R  C  *  R  R  Y  C  R  S  D  G  S  S  S  V  S  Y  R  E  P  G  C  H  *  H  C  Y  C  W  D  V  V  *  P  E  G   : G  S  C  W  H  S  *  N  T  L  S  S  F  Q  S  N  *  Q  A  Y  S  A  Y  L  S  *  W  *  R  K  N  A  Q  G  Q  Q  R  G  T  R  A   : D  P  K  S  C  T  Q  Q  V  R  H  R  T  *  S  S  C  G  D  *  *  V  C  *  E  G  F  A  L  T  W  C  G  L  P   : G  S  S  R  G  K  E  G  E  F  R  R  T  M  A  I  H  W  S  P  A  F  V  *  S  S  K  T  R  Q  C  *  D  Y  K  E  G  F  E  S  W  S  E  C  *  N  D  H  R :   G  S  T  G  Y  R  K  R  N  R  A  S  S  G  N  G  N  Q  H  V  S  F  I  C  S  V  G  A  D  *  G  *  I  N  C  F  F  T  N  *  *  T  D  R  K  G  *  W  F  C  W  S  I  P  * :   A  Q  I  *  D  C  K  T  L  A  S  *  E  A  Y  L  W  N  D  W  R  W  S  Q  *  R  S  C  F  K  E  G  *  Y  W  D  S  C  *  *  C  H  *  C  C  S  *  C  F  *  H  C  S  Y  *  T  W  S  Q  C  H  H  *  C  C  S  D  *  S  S  N  L  S  K  D  E  K  L  Y   : D  I  C  C  F  H  H  N  P  Y  C   : A  W  F  Y  A  S  G  P  Y  L  E  V  *  L  S  T  F  H  G  A  Y  H  C  N  P  Q  *  R :   Y  H  Y  D  N  I  K  G  *  G  Q  T  I  S  S  A  *  *  L  E  A  G  *  D  F  H  Y  W  G  C  S  W  W  L  L  G  N  D  D  S  H  F  L  L  G  S  I  *  D  R  F  L  P   : A  C  I  W  G  I  N  T  S  E  D  S  N  *  *  L  Q  E  T  C  I  S  N  L  P  S  S  E  H  Y  Q  S  G  P  D  I  C  H  K  I  S  K  L  V  V  C  *  A  S  W  F  V  A  C  G  C  F  S  D  C  S  T   : G  C  H  L  D  C  C  L  C  K  L  E  L  C  C  N  R  R  N  W  L  G  L  G  R  S  D  L  A  L  Q  F  S  I  L  L  P  A  *  Y  H  Q  V  L  N  Q  I  C  S  Q  W  K  G  L  G  S  C  S  *  A  K   : D  C  F  H  Q  E  E  G  F  R  K  R  T  T  *  A  S  M  G  P  R  T  E  D  P  S  W  A  A  S  S  *  H  Q  I  V  *  *  S  Y  Q  F  Q  *  A  *  S  V  S  *  G  S  K  E  E  S  *  N  R  *  :  A  T  *  A  A  H  T  *  R  S  R  G  I  S  G  E  V  E  G  S  *  H  R  D  N  S  A  V  I  H  C  L  M  W  E  Q  V  *  L  V  L  L  N  W  *  V  G  D  R  M  K  T  *  *  V  C  E  L  P  L  E  R  Q  V  H  S  S  N  I  F  S  V  *  K  C  L  I  Y  F  I  H  F  F  A  L  N  S  W  F  I  F  S  C  F  H  V  L  T  T  L  Y  I  L  Q  L  T  K  N  E  Y  *  A  I  T  A  F  I  I  Y  I  L  K  S  F  Y  F  M  V  *  Q  H  L  V  F  V  L  L  L  S  I  H  *  L  K  K  F  G  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0128E05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35028" stop="34957"/>
                    <exon start="34828" stop="34754"/>
                    <exon start="34658" stop="34539"/>
                    <exon start="34169" stop="34071"/>
                    <exon start="33984" stop="33847"/>
                    <exon start="33700" stop="33566"/>
                    <exon start="33475" stop="33296"/>
                    <exon start="33199" stop="32993"/>
                    <exon start="32873" stop="32754"/>
                    <exon start="32670" stop="32551"/>
                    <exon start="32470" stop="32348"/>
                    <exon start="32257" stop="32153"/>
                    <exon start="31946" stop="31802"/>
                    <exon start="31183" stop="31019"/>
                    <exon start="30906" stop="30668"/>
                    <exon start="30481" stop="30449"/>
                    <exon start="30358" stop="30277"/>
                    <exon start="29695" stop="29535"/>
                    <exon start="29062" stop="28877"/>
                    <exon start="28796" stop="28614"/>
                    <exon start="28529" stop="28351"/>
                    <exon start="28091" stop="27995"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2961</number_coding_nucleotides>
                  <number_encoded_amino_acids>987</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLFWIWWAIYQSYFWTREKSYLSLEERKLSKMGEKPEVLDAVLKETVDLENIPIEEVFENLRCTKEGLTGTAAQERLAIFGYNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLVINSTISFIEENNAGNAAAALMARLAPKAKVLRDGKWNEEDAAVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMIIEIIVMYPIQHRKYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLAQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFAKGVDADTVVLMAARASRTENQDAIDTAIVGMLSDPKEARAGIREIHFLPFNPTDKRTALTYLDGEGKMHRVSKGAPEQILNLAHNKSDIERRVHAVIDKFAERGLRSLGVAYQEVPEGRKESSGGPWQFIGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQTKDESIASLPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVDDATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGVVLGGYLAMMTVIFFWAAYETDFFPRVFGVSTLQRTATDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGLLLVVAFLIAQLVATLIAVYASWSFAAIEGIGWGWAGVIWLYNLVFYFPLDIIKFLIRYALSGRAWDLVLEQRIAFTRKKDFGKEQRELQWAHAQRTLHGLQVPDTKLFSEATNFNELNQLAEEAKRRAEIARQRELHTLKGHVESVVKLKGLDIETIQQSYTV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="31393" e_stop="31381"/>
            <exon e_start="31183" e_stop="31019"/>
            <exon e_start="30906" e_stop="30668"/>
            <exon e_start="30481" e_stop="30449"/>
            <exon e_start="30358" e_stop="30277"/>
            <exon e_start="29695" e_stop="29535"/>
            <exon e_start="29062" e_stop="28877"/>
            <exon e_start="28796" e_stop="28614"/>
            <exon e_start="28529" e_stop="28351"/>
            <exon e_start="28091" e_stop="27645"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.160" acc_prob="1.000" e_score="0.692"/>
          <exon-intron don_prob="0.972" acc_prob="0.879" e_score="1.000"/>
          <exon-intron don_prob="0.848" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.692">
            <gDNA_exon_boundary e_start="31393" e_stop="31381" e_length="13"/>
          </exon>
          <intron i_serial="1" don_prob="0.160" acc_prob="1.000">
            <gDNA_intron_boundary i_start="31380" i_stop="31184" i_length="197"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31183" e_stop="31019" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.879">
            <gDNA_intron_boundary i_start="31018" i_stop="30907" i_length="112"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30906" e_stop="30668" e_length="239"/>
          </exon>
          <intron i_serial="3" don_prob="0.848" acc_prob="0.970">
            <gDNA_intron_boundary i_start="30667" i_stop="30482" i_length="186"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="30481" e_stop="30449" e_length="33"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.996">
            <gDNA_intron_boundary i_start="30448" i_stop="30359" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="30358" e_stop="30277" e_length="82"/>
          </exon>
          <intron i_serial="5" don_prob="0.902" acc_prob="0.947">
            <gDNA_intron_boundary i_start="30276" i_stop="29696" i_length="581"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="29695" e_stop="29535" e_length="161"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.989">
            <gDNA_intron_boundary i_start="29534" i_stop="29063" i_length="472"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="29062" e_stop="28877" e_length="186"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28876" i_stop="28797" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="28796" e_stop="28614" e_length="183"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28613" i_stop="28530" i_length="84"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="28529" e_stop="28351" e_length="179"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28350" i_stop="28092" i_length="259"/>
          </intron>
          <exon e_serial="10" e_score="0.975">
            <gDNA_exon_boundary e_start="28091" e_stop="27645" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31393" stop="31381"/>
              <exon start="31183" stop="31019"/>
              <exon start="30906" stop="30668"/>
              <exon start="30481" stop="30449"/>
              <exon start="30358" stop="30277"/>
              <exon start="29695" stop="29535"/>
              <exon start="29062" stop="28977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31167" stop="31019"/>
              <exon start="30906" stop="30668"/>
              <exon start="30481" stop="30449"/>
              <exon start="30358" stop="30277"/>
              <exon start="29695" stop="29535"/>
              <exon start="29062" stop="28949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31043" stop="31019"/>
              <exon start="30906" stop="30668"/>
              <exon start="30481" stop="30449"/>
              <exon start="30358" stop="30277"/>
              <exon start="29695" stop="29535"/>
              <exon start="29062" stop="28939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31034" stop="31019"/>
              <exon start="30906" stop="30668"/>
              <exon start="30481" stop="30449"/>
              <exon start="30358" stop="30277"/>
              <exon start="29695" stop="29535"/>
              <exon start="29062" stop="28877"/>
              <exon start="28796" stop="28750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31034" stop="31019"/>
              <exon start="30906" stop="30668"/>
              <exon start="30481" stop="30449"/>
              <exon start="30358" stop="30277"/>
              <exon start="29695" stop="29552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30848" stop="30668"/>
              <exon start="30481" stop="30449"/>
              <exon start="30358" stop="30277"/>
              <exon start="29695" stop="29535"/>
              <exon start="29062" stop="28987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30816" stop="30668"/>
              <exon start="30481" stop="30449"/>
              <exon start="30358" stop="30277"/>
              <exon start="29695" stop="29535"/>
              <exon start="29062" stop="28877"/>
              <exon start="28796" stop="28651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30803" stop="30668"/>
              <exon start="30481" stop="30449"/>
              <exon start="30358" stop="30277"/>
              <exon start="29695" stop="29535"/>
              <exon start="29062" stop="28877"/>
              <exon start="28796" stop="28637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30716" stop="30668"/>
              <exon start="30481" stop="30449"/>
              <exon start="30358" stop="30277"/>
              <exon start="29695" stop="29535"/>
              <exon start="29062" stop="28877"/>
              <exon start="28796" stop="28735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30470" stop="30449"/>
              <exon start="30358" stop="30277"/>
              <exon start="29695" stop="29535"/>
              <exon start="29062" stop="28920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30328" stop="30277"/>
              <exon start="29695" stop="29535"/>
              <exon start="29062" stop="28877"/>
              <exon start="28796" stop="28624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29695" stop="29535"/>
              <exon start="29062" stop="28877"/>
              <exon start="28796" stop="28614"/>
              <exon start="28529" stop="28518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29589" stop="29535"/>
              <exon start="29062" stop="28877"/>
              <exon start="28796" stop="28614"/>
              <exon start="28529" stop="28391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29576" stop="29535"/>
              <exon start="29062" stop="28877"/>
              <exon start="28796" stop="28614"/>
              <exon start="28529" stop="28471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29062" stop="28877"/>
              <exon start="28796" stop="28614"/>
              <exon start="28529" stop="28351"/>
              <exon start="28091" stop="27725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29046" stop="28877"/>
              <exon start="28796" stop="28614"/>
              <exon start="28529" stop="28351"/>
              <exon start="28091" stop="27837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29029" stop="28877"/>
              <exon start="28796" stop="28614"/>
              <exon start="28529" stop="28351"/>
              <exon start="28091" stop="27778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28989" stop="28877"/>
              <exon start="28796" stop="28614"/>
              <exon start="28529" stop="28351"/>
              <exon start="28091" stop="27962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28970" stop="28877"/>
              <exon start="28796" stop="28614"/>
              <exon start="28529" stop="28351"/>
              <exon start="28091" stop="27991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28966" stop="28877"/>
              <exon start="28796" stop="28614"/>
              <exon start="28529" stop="28433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28916" stop="28877"/>
              <exon start="28796" stop="28614"/>
              <exon start="28529" stop="28520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28888" stop="28877"/>
              <exon start="28796" stop="28614"/>
              <exon start="28529" stop="28351"/>
              <exon start="28091" stop="27645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28707" stop="28614"/>
              <exon start="28529" stop="28351"/>
              <exon start="28091" stop="27709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28701" stop="28614"/>
              <exon start="28529" stop="28351"/>
              <exon start="28091" stop="27709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28701" stop="28614"/>
              <exon start="28529" stop="28351"/>
              <exon start="28091" stop="27737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28700" stop="28614"/>
              <exon start="28529" stop="28351"/>
              <exon start="28091" stop="27709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28676" stop="28614"/>
              <exon start="28529" stop="28351"/>
              <exon start="28091" stop="27725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28438" stop="28351"/>
              <exon start="28091" stop="27748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28438" stop="28351"/>
              <exon start="28091" stop="27914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28414" stop="28351"/>
              <exon start="28091" stop="27737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28414" stop="28351"/>
              <exon start="28091" stop="27737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28414" stop="28351"/>
              <exon start="28091" stop="27737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28414" stop="28351"/>
              <exon start="28091" stop="27737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28414" stop="28351"/>
              <exon start="28091" stop="27737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738495" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAAGGATTTCAG : GGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTG : AGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACG : ATATATGCTGTTTCCATCACAATCCGTATTGTG : CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACG : GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG : CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG : GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG : ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG : GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGAGTTTTTATTTCATGGTTTAGCAGCATCTGGTTTTTGTACTGCTTCTCTCTATTCATTGATTAAAGAAGTTTGGCTTTTTT</gDNA_template>
            <first_frame> I  R  I  S   : G  D  Q  L  A  I  G  K  E  T  G  R  R  L  G  M  G  T  N  M  Y  P  S  S  A  L  L  G  Q  T  K  D  E  S  I  A  S  L  P  I  D  E  L  I  E  K  A  D  G  F  A  G  V  F  P   : E  H  K  Y  E  I  V  K  R  L  Q  A  R  K  H  I  C  G  M  T  G  D  G  V  N  D  A  P  A  L  K  K  A  D  I  G  I  A  V  D  D  A  T  D  A  A  R  S  A  S  D  I  V  L  T  E  P  G  L  S  V  I  I  S  A  V  L  T  S  R  A  I  F  Q  R  M  K  N  Y  T  :  I  Y  A  V  S  I  T  I  R  I  V  :  L  G  F  M  L  L  A  L  I  W  K  F  D  F  P  P  F  M  V  L  I  I  A  I  L  N  D   : G  T  I  M  T  I  S  K  D  R  V  K  P  S  P  L  P  D  S  W  K  L  A  E  I  F  T  T  G  V  V  L  G  G  Y  L  A  M  M  T  V  I  F  F  W  A  A  Y  E  T  D  F  F  P  :  R  V  F  G  V  S  T  L  Q  R  T  A  T  D  D  F  R  K  L  A  S  A  I  Y  L  Q  V  S  T  I  S  Q  A  L  I  F  V  T  R  S  R  S  W  S  F  V  E  R  P  G  L  L  L  V  V  A  F  L  I  A  Q  L  :  V  A  T  L  I  A  V  Y  A  S  W  S  F  A  A  I  E  G  I  G  W  G  W  A  G  V  I  W  L  Y  N  L  V  F  Y  F  P  L  D  I  I  K  F  L  I  R  Y  A  L  S  G  R  A  W  D  L  V  L  E  Q  R  :  I  A  F  T  R  K  K  D  F  G  K  E  Q  R  E  L  Q  W  A  H  A  Q  R  T  L  H  G  L  Q  V  P  D  T  K  L  F  S  E  A  T  N  F  N  E  L  N  Q  L  A  E  E  A  K  R  R  A  E  I  A  R :   Q  R  E  L  H  T  L  K  G  H  V  E  S  V  V  K  L  K  G  L  D  I  E  T  I  Q  Q  S  Y  T  V  *  C  G  S  K  Y  D  *  C  Y  L  T  G  E  W  V  I  E  *  R  H  N  E  C  V  S  Y  L  W  S  D  K  F  I  V  V  T  S  S  A  F  K  S  A  L  Y  I  L  Y  I  F  L  L  *  I  L  G  S  S  F  P  A  F  M  S  *  L  H  Y  I  Y  Y  N  *  P  R  M  N  I  K  L  *  Q  H  S  L  S  I  F  S  R  V  F  I  S  W  F  S  S  I  W  F  L  Y  C  F  S  L  F  I  D  *  R  S  L  A  F   </first_frame>
            <second_frame>  *  G  F  Q  :  G  I  N  W  L  *  E  K  K  Q  G  V  V  W  E  W  E  P  T  C  I  L  H  L  L  C  W  G  R  L  R  M  N  Q  L  L  L  Y  Q  L  M  N  *  *  K  R  L  M  V  L  L  E  Y  S  L  :  S  T  N  M  R  L  *  N  A  C  K  L  G  S  I  S  V  E  *  L  E  M  E  S  M  T  L  L  L  *  R  R  L  I  L  G  *  L  L  M  M  P  L  M  L  L  V  V  L  L  T  L  F  L  L  N  L  V  S  V  S  S  L  V  L  F  *  L  V  E  Q  S  F  K  G  *  K  T  I  R :   Y  M  L  F  P  S  Q  S  V  L  C :   L  V  L  C  F  W  P  L  S  G  S  L  T  F  H  L  S  W  C  L  S  L  Q  S  S  M  T  :  V  P  L  *  Q  Y  Q  R  I  G  S  N  H  L  L  C  L  I  V  G  S  W  L  R  F  S  L  L  G  L  F  L  V  A  T  W  Q  *  *  Q  S  F  S  F  G  Q  H  M  R  Q  I  S  S  R :   V  Y  L  G  Y  Q  H  F  R  G  Q  Q  L  M  T  S  G  N  L  H  Q  Q  F  T  F  K  *  A  L  S  V  R  P  *  Y  L  S  Q  D  L  E  V  G  R  L  L  S  V  L  V  C  C  L  W  L  L  F  *  L  L  N  W :   L  P  P  *  L  L  F  M  Q  V  G  A  L  L  Q  S  K  E  L  A  G  V  G  Q  E  *  S  G  S  T  I  *  Y  S  T  S  R  L  I  S  S  S  S  *  S  D  M  L  S  V  E  G  P  G  I  L  F  L  S  K  G :   L  L  S  P  G  R  R  I  S  E  K  N  N  V  S  F  N  G  P  T  H  R  G  P  F  M  G  C  K  F  L  T  P  N  C  L  V  K  L  P  I  S  M  S  L  I  S  *  L  R  K  Q  R  G  E  L  K  S  L   : G  N  V  S  C  T  H  L  K  V  T  W  N  Q  W  *  S  *  R  V  L  T  *  R  Q  F  S  S  H  T  L  F  D  V  G  A  S  M  T  S  A  T  *  L  V  S  G  *  *  N  E  D  I  M  S  V  *  V  T  S  G  A  T  S  S  *  *  *  H  L  Q  R  L  K  V  P  Y  I  F  Y  T  F  F  C  F  E  F  L  V  H  L  F  L  L  S  C  L  D  Y  I  I  Y  I  T  I  D  Q  E  *  I  L  S  Y  N  S  I  H  Y  L  Y  S  Q  E  F  L  F  H  G  L  A  A  S  G  F  C  T  A  S  L  Y  S  L  I  K  E  V  W  L  F  </second_frame>
            <third_frame>   K  D  F  R :   G  S  T  G  Y  R  K  R  N  R  A  S  S  G  N  G  N  Q  H  V  S  F  I  C  S  V  G  A  D  *  G  *  I  N  C  F  F  T  N  *  *  T  D  R  K  G  *  W  F  C  W  S  I  P  * :   A  Q  I  *  D  C  K  T  L  A  S  *  E  A  Y  L  W  N  D  W  R  W  S  Q  *  R  S  C  F  K  E  G  *  Y  W  D  S  C  *  *  C  H  *  C  C  S  *  C  F  *  H  C  S  Y  *  T  W  S  Q  C  H  H  *  C  C  S  D  *  S  S  N  L  S  K  D  E  K  L  Y   : D  I  C  C  F  H  H  N  P  Y  C   : A  W  F  Y  A  S  G  P  Y  L  E  V  *  L  S  T  F  H  G  A  Y  H  C  N  P  Q  *  R :   Y  H  Y  D  N  I  K  G  *  G  Q  T  I  S  S  A  *  *  L  E  A  G  *  D  F  H  Y  W  G  C  S  W  W  L  L  G  N  D  D  S  H  F  L  L  G  S  I  *  D  R  F  L  P   : A  C  I  W  G  I  N  T  S  E  D  S  N  *  *  L  Q  E  T  C  I  S  N  L  P  S  S  E  H  Y  Q  S  G  P  D  I  C  H  K  I  S  K  L  V  V  C  *  A  S  W  F  V  A  C  G  C  F  S  D  C  S  T   : G  C  H  L  D  C  C  L  C  K  L  E  L  C  C  N  R  R  N  W  L  G  L  G  R  S  D  L  A  L  Q  F  S  I  L  L  P  A  *  Y  H  Q  V  L  N  Q  I  C  S  Q  W  K  G  L  G  S  C  S  *  A  K   : D  C  F  H  Q  E  E  G  F  R  K  R  T  T  *  A  S  M  G  P  R  T  E  D  P  S  W  A  A  S  S  *  H  Q  I  V  *  *  S  Y  Q  F  Q  *  A  *  S  V  S  *  G  S  K  E  E  S  *  N  R  *  :  A  T  *  A  A  H  T  *  R  S  R  G  I  S  G  E  V  E  G  S  *  H  R  D  N  S  A  V  I  H  C  L  M  W  E  Q  V  *  L  V  L  L  N  W  *  V  G  D  R  M  K  T  *  *  V  C  E  L  P  L  E  R  Q  V  H  S  S  N  I  F  S  V  *  K  C  L  I  Y  F  I  H  F  F  A  L  N  S  W  F  I  F  S  C  F  H  V  L  T  T  L  Y  I  L  Q  L  T  K  N  E  Y  *  A  I  T  A  F  I  I  Y  I  L  K  S  F  Y  F  M  V  *  Q  H  L  V  F  V  L  L  L  S  I  H  *  L  K  K  F  G  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0128E05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31393" stop="31381"/>
                    <exon start="31183" stop="31019"/>
                    <exon start="30906" stop="30668"/>
                    <exon start="30481" stop="30449"/>
                    <exon start="30358" stop="30277"/>
                    <exon start="29695" stop="29535"/>
                    <exon start="29062" stop="28877"/>
                    <exon start="28796" stop="28614"/>
                    <exon start="28529" stop="28351"/>
                    <exon start="28091" stop="27995"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1335</number_coding_nucleotides>
                  <number_encoded_amino_acids>445</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRISGDQLAIGKETGRRLGMGTNMYPSSALLGQTKDESIASLPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVDDATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGVVLGGYLAMMTVIFFWAAYETDFFPRVFGVSTLQRTATDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGLLLVVAFLIAQLVATLIAVYASWSFAAIEGIGWGWAGVIWLYNLVFYFPLDIIKFLIRYALSGRAWDLVLEQRIAFTRKKDFGKEQRELQWAHAQRTLHGLQVPDTKLFSEATNFNELNQLAEEAKRRAEIARQRELHTLKGHVESVVKLKGLDIETIQQSYTV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="34835" e_stop="34754"/>
            <exon e_start="34658" e_stop="34539"/>
            <exon e_start="28508" e_stop="28351"/>
            <exon e_start="28091" e_stop="27737"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.283" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34835" e_stop="34754" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="0.283" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34753" i_stop="34659" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34658" e_stop="34539" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34538" i_stop="28509" i_length="6030"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28508" e_stop="28351" e_length="158"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28350" i_stop="28092" i_length="259"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28091" e_stop="27737" e_length="355"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34835" stop="34754"/>
              <exon start="34658" stop="34539"/>
              <exon start="28508" stop="28351"/>
              <exon start="28091" stop="27950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28438" stop="28351"/>
              <exon start="28091" stop="27748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28438" stop="28351"/>
              <exon start="28091" stop="27914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28414" stop="28351"/>
              <exon start="28091" stop="27737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28414" stop="28351"/>
              <exon start="28091" stop="27737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28414" stop="28351"/>
              <exon start="28091" stop="27737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28414" stop="28351"/>
              <exon start="28091" stop="27737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28414" stop="28351"/>
              <exon start="28091" stop="27737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738495" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAATAGGAAGAGAGGAAATTGAGCAAGATGGGGGAGAAACCTGAGGTGTTAGATGCTGTATTAAAGGAGACTGTGGATTTG : GAGAATATACCCATTGAAGAAGTTTTTGAAAATTTGAGATGTACCAAAGAGGGTCTTACTGGTACAGCTGCCCAAGAAAGGTTGGCAATTTTTGGGTACAACAAACTAGAGGAGAAGAAG : GATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG : GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCT</gDNA_template>
            <first_frame> E  I  G  R  E  E  I  E  Q  D  G  G  E  T  *  G  V  R  C  C  I  K  G  D  C  G  F   : G  E  Y  T  H  *  R  S  F  *  K  F  E  M  Y  Q  R  G  S  Y  W  Y  S  C  P  R  K  V  G  N  F  W  V  Q  Q  T  R  G  E  E   : G  F  R  K  R  T  T  *  A  S  M  G  P  R  T  E  D  P  S  W  A  A  S  S  *  H  Q  I  V  *  *  S  Y  Q  F  Q  *  A  *  S  V  S  *  G  S  K  E  E  S  *  N  R  *  :  A  T  *  A  A  H  T  *  R  S  R  G  I  S  G  E  V  E  G  S  *  H  R  D  N  S  A  V  I  H  C  L  M  W  E  Q  V  *  L  V  L  L  N  W  *  V  G  D  R  M  K  T  *  *  V  C  E  L  P  L  E  R  Q  V  H  S  S  N  I  F  S  V  *  K  C  L  I  Y  F  I  H  F  F  A  L  N  S  W  F  I  F  S  C  F  H  V  L  T  T  L  Y  I  L  Q  L  T  K  N  E  Y  *  A  I  T  A  F  I  I  </first_frame>
            <second_frame>  K  *  E  E  R  K  L  S  K  M  G  E  K  P  E  V  L  D  A  V  L  K  E  T  V  D  L  :  E  N  I  P  I  E  E  V  F  E  N  L  R  C  T  K  E  G  L  T  G  T  A  A  Q  E  R  L  A  I  F  G  Y  N  K  L  E  E  K  K  :  D  F  G  K  E  Q  R  E  L  Q  W  A  H  A  Q  R  T  L  H  G  L  Q  V  P  D  T  K  L  F  S  E  A  T  N  F  N  E  L  N  Q  L  A  E  E  A  K  R  R  A  E  I  A  R :   Q  R  E  L  H  T  L  K  G  H  V  E  S  V  V  K  L  K  G  L  D  I  E  T  I  Q  Q  S  Y  T  V  *  C  G  S  K  Y  D  *  C  Y  L  T  G  E  W  V  I  E  *  R  H  N  E  C  V  S  Y  L  W  S  D  K  F  I  V  V  T  S  S  A  F  K  S  A  L  Y  I  L  Y  I  F  L  L  *  I  L  G  S  S  F  P  A  F  M  S  *  L  H  Y  I  Y  Y  N  *  P  R  M  N  I  K  L  *  Q  H  S  L  S </second_frame>
            <third_frame>   N  R  K  R  G  N  *  A  R  W  G  R  N  L  R  C  *  M  L  Y  *  R  R  L  W  I  W :   R  I  Y  P  L  K  K  F  L  K  I  *  D  V  P  K  R  V  L  L  V  Q  L  P  K  K  G  W  Q  F  L  G  T  T  N  *  R  R  R  R :   I  S  E  K  N  N  V  S  F  N  G  P  T  H  R  G  P  F  M  G  C  K  F  L  T  P  N  C  L  V  K  L  P  I  S  M  S  L  I  S  *  L  R  K  Q  R  G  E  L  K  S  L   : G  N  V  S  C  T  H  L  K  V  T  W  N  Q  W  *  S  *  R  V  L  T  *  R  Q  F  S  S  H  T  L  F  D  V  G  A  S  M  T  S  A  T  *  L  V  S  G  *  *  N  E  D  I  M  S  V  *  V  T  S  G  A  T  S  S  *  *  *  H  L  Q  R  L  K  V  P  Y  I  F  Y  T  F  F  C  F  E  F  L  V  H  L  F  L  L  S  C  L  D  Y  I  I  Y  I  T  I  D  Q  E  *  I  L  S  Y  N  S  I  H  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0128E05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34828" stop="34754"/>
                    <exon start="34658" stop="34539"/>
                    <exon start="28508" stop="28351"/>
                    <exon start="28091" stop="27995"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EERKLSKMGEKPEVLDAVLKETVDLENIPIEEVFENLRCTKEGLTGTAAQERLAIFGYNKLEEKKDFGKEQRELQWAHAQRTLHGLQVPDTKLFSEATNFNELNQLAEEAKRRAEIARQRELHTLKGHVESVVKLKGLDIETIQQSYTV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="44288" PGL_stop="51541"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44288" e_stop="44914"/>
            <exon e_start="50554" e_stop="51541"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="44288" e_stop="44914" e_length="627"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44915" i_stop="50553" i_length="5639"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50554" e_stop="51541" e_length="988"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44288" stop="44914"/>
              <exon start="50554" stop="51541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746475" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACCCTTCCAAATTTCATCATTTCAACTGAAGAAACAGCAATTGCTACCGGAAAAATGGGGGTCGATTACTATAACATACTTAAGGTTAATCGTAACGCCAGTGAAGAAGATTTGCGTAAAGCTTATCGGCGGTTAGCGATGATTTGGCATCCTGATAAGAACCTTGGCACCAATAAGTATGAGGCGGAGGCAAAATTCAAGCAAATTTCTGAAGCTTATGATGTTCTTAGCGATCCACAGAAGCGTCAGATCTACGATCTATACGGTGAGGAGGCGTTGAAAACGGGTCAGGTGCCACCTCCTCCAAGAGGTGGACCCCACAACATGCGGAATCCTCATCCTAATCCTTCGTTCCGGTTTAATCCTAGAGATGCTGATGATATTTATGCGGAATTGTTTGGGGCATCGTCATCGGAGAATAATGGGAGGGCGAGGAAGACTCGAGATGGGTTTTTTAGGAGTACCACGAATGGAGGGGCTGAGTTTTCCGGTGCTGGGAACTCCAGTACCGGAGGGTTAAGAAAGGCTGCGCCAGTGGAGAATGCATTGTTGTGCCGTTTGGAGGATTTGTATAAAGGGGCCAAGAAAAAGATGAAAATTTCTAGGACTGTCTTGGATTCTTCCGG : GAAGCTTCGAACTCTGGAGGAGATATTGACCATTGATATTAAACCTGGTTGGAAGAAAGGAACCAAGGTAACTTTTCCTGAAAAAGGAAATGAGGAACCTGGTGTCATTCCAGCAGATCTGGTGTTTGTAATAGAGGAAAAACCTCATCATGTCTATGTGAGAGATGGTAATGACCTTACTGTCAATCAAGAGATTTCACTTCTTGAAGCTCTCACGGGGAAAACACTGGAACTGACAACACTGGATGGGAGAAACCTCATTATTCCATTGACCGACATTGTCAAACCAGGGCATGAGATAATAGTACCAAATGAAGGGATGCCAATCTCAAAAGAGCCTCGGAAAAAAGGAAATCTGAGAATCAAGATAGATGTTAAGTATCCAACAAGGCTCACAGAAGCACAGAAATCTGACCTCAGGAGAGTTCTCGGCCAGGGGTGACCATATGAACATAGGTATTCAGATTACAAGGGGTGACTATATGAACACAGGTAGATAGAGCAGAATGCAGACGTTGGATGTAAATATAGGATATGCTTATTGCTTGCAACTGGAACTGTGAATACTAGGAAGGTCTAGTAGCCTCAATGTTTTGGGGACAAAGGATTTTTGGGGGAGTTCGGATAGTGGTGGGATTAATTTTTTCATTGGTCGGGGACATATCCCTCCACATTATTTGATCGATAAAATATAGATGATGTTAATGCAAGCTCTTCTCTTCTGTTGCTTGTGATTTTAGGGGTCTGATCAAGACAAAAATGCACTAGGATCTTGCATTTGAGTTGGTTCAATGTTGAATTATGTCCATTATATGTTGACATAGAGCAAGATTTATGTTTTTCTCCCTTGAGAAAACCCCCTGCTCTTTTCTTGGTCTCTTTTCTTCTTTTTCCTGCATCATGTACTGAAAAATGACAGCAGATCAGACATTCTTAAGTTGTTACAAAATCCATTGTTCTTAAGCAGCACAATTTTGTGGTTGTTTTC</gDNA_template>
            <first_frame> Y  P  S  K  F  H  H  F  N  *  R  N  S  N  C  Y  R  K  N  G  G  R  L  L  *  H  T  *  G  *  S  *  R  Q  *  R  R  F  A  *  S  L  S  A  V  S  D  D  L  A  S  *  *  E  P  W  H  Q  *  V  *  G  G  G  K  I  Q  A  N  F  *  S  L  *  C  S  *  R  S  T  E  A  S  D  L  R  S  I  R  *  G  G  V  E  N  G  S  G  A  T  S  S  K  R  W  T  P  Q  H  A  E  S  S  S  *  S  F  V  P  V  *  S  *  R  C  *  *  Y  L  C  G  I  V  W  G  I  V  I  G  E  *  W  E  G  E  E  D  S  R  W  V  F  *  E  Y  H  E  W  R  G  *  V  F  R  C  W  E  L  Q  Y  R  R  V  K  K  G  C  A  S  G  E  C  I  V  V  P  F  G  G  F  V  *  R  G  Q  E  K  D  E  N  F  *  D  C  L  G  F  F  R  :  E  A  S  N  S  G  G  D  I  D  H  *  Y  *  T  W  L  E  E  R  N  Q  G  N  F  S  *  K  R  K  *  G  T  W  C  H  S  S  R  S  G  V  C  N  R  G  K  T  S  S  C  L  C  E  R  W  *  *  P  Y  C  Q  S  R  D  F  T  S  *  S  S  H  G  E  N  T  G  T  D  N  T  G  W  E  K  P  H  Y  S  I  D  R  H  C  Q  T  R  A  *  D  N  S  T  K  *  R  D  A  N  L  K  R  A  S  E  K  R  K  S  E  N  Q  D  R  C  *  V  S  N  K  A  H  R  S  T  E  I  *  P  Q  E  S  S  R  P  G  V  T  I  *  T  *  V  F  R  L  Q  G  V  T  I  *  T  Q  V  D  R  A  E  C  R  R  W  M  *  I  *  D  M  L  I  A  C  N  W  N  C  E  Y  *  E  G  L  V  A  S  M  F  W  G  Q  R  I  F  G  G  V  R  I  V  V  G  L  I  F  S  L  V  G  D  I  S  L  H  I  I  *  S  I  K  Y  R  *  C  *  C  K  L  F  S  S  V  A  C  D  F  R  G  L  I  K  T  K  M  H  *  D  L  A  F  E  L  V  Q  C  *  I  M  S  I  I  C  *  H  R  A  R  F  M  F  F  S  L  E  K  T  P  C  S  F  L  G  L  F  S  S  F  S  C  I  M  Y  *  K  M  T  A  D  Q  T  F  L  S  C  Y  K  I  H  C  S  *  A  A  Q  F  C  G  C  F  </first_frame>
            <second_frame>  T  L  P  N  F  I  I  S  T  E  E  T  A  I  A  T  G  K  M  G  V  D  Y  Y  N  I  L  K  V  N  R  N  A  S  E  E  D  L  R  K  A  Y  R  R  L  A  M  I  W  H  P  D  K  N  L  G  T  N  K  Y  E  A  E  A  K  F  K  Q  I  S  E  A  Y  D  V  L  S  D  P  Q  K  R  Q  I  Y  D  L  Y  G  E  E  A  L  K  T  G  Q  V  P  P  P  P  R  G  G  P  H  N  M  R  N  P  H  P  N  P  S  F  R  F  N  P  R  D  A  D  D  I  Y  A  E  L  F  G  A  S  S  S  E  N  N  G  R  A  R  K  T  R  D  G  F  F  R  S  T  T  N  G  G  A  E  F  S  G  A  G  N  S  S  T  G  G  L  R  K  A  A  P  V  E  N  A  L  L  C  R  L  E  D  L  Y  K  G  A  K  K  K  M  K  I  S  R  T  V  L  D  S  S  G :   K  L  R  T  L  E  E  I  L  T  I  D  I  K  P  G  W  K  K  G  T  K  V  T  F  P  E  K  G  N  E  E  P  G  V  I  P  A  D  L  V  F  V  I  E  E  K  P  H  H  V  Y  V  R  D  G  N  D  L  T  V  N  Q  E  I  S  L  L  E  A  L  T  G  K  T  L  E  L  T  T  L  D  G  R  N  L  I  I  P  L  T  D  I  V  K  P  G  H  E  I  I  V  P  N  E  G  M  P  I  S  K  E  P  R  K  K  G  N  L  R  I  K  I  D  V  K  Y  P  T  R  L  T  E  A  Q  K  S  D  L  R  R  V  L  G  Q  G  *  P  Y  E  H  R  Y  S  D  Y  K  G  *  L  Y  E  H  R  *  I  E  Q  N  A  D  V  G  C  K  Y  R  I  C  L  L  L  A  T  G  T  V  N  T  R  K  V  *  *  P  Q  C  F  G  D  K  G  F  L  G  E  F  G  *  W  W  D  *  F  F  H  W  S  G  T  Y  P  S  T  L  F  D  R  *  N  I  D  D  V  N  A  S  S  S  L  L  L  L  V  I  L  G  V  *  S  R  Q  K  C  T  R  I  L  H  L  S  W  F  N  V  E  L  C  P  L  Y  V  D  I  E  Q  D  L  C  F  S  P  L  R  K  P  P  A  L  F  L  V  S  F  L  L  F  P  A  S  C  T  E  K  *  Q  Q  I  R  H  S  *  V  V  T  K  S  I  V  L  K  Q  H  N  F  V  V  V  F </second_frame>
            <third_frame>   P  F  Q  I  S  S  F  Q  L  K  K  Q  Q  L  L  P  E  K  W  G  S  I  T  I  T  Y  L  R  L  I  V  T  P  V  K  K  I  C  V  K  L  I  G  G  *  R  *  F  G  I  L  I  R  T  L  A  P  I  S  M  R  R  R  Q  N  S  S  K  F  L  K  L  M  M  F  L  A  I  H  R  S  V  R  S  T  I  Y  T  V  R  R  R  *  K  R  V  R  C  H  L  L  Q  E  V  D  P  T  T  C  G  I  L  I  L  I  L  R  S  G  L  I  L  E  M  L  M  I  F  M  R  N  C  L  G  H  R  H  R  R  I  M  G  G  R  G  R  L  E  M  G  F  L  G  V  P  R  M  E  G  L  S  F  P  V  L  G  T  P  V  P  E  G  *  E  R  L  R  Q  W  R  M  H  C  C  A  V  W  R  I  C  I  K  G  P  R  K  R  *  K  F  L  G  L  S  W  I  L  P   : G  S  F  E  L  W  R  R  Y  *  P  L  I  L  N  L  V  G  R  K  E  P  R  *  L  F  L  K  K  E  M  R  N  L  V  S  F  Q  Q  I  W  C  L  *  *  R  K  N  L  I  M  S  M  *  E  M  V  M  T  L  L  S  I  K  R  F  H  F  L  K  L  S  R  G  K  H  W  N  *  Q  H  W  M  G  E  T  S  L  F  H  *  P  T  L  S  N  Q  G  M  R  *  *  Y  Q  M  K  G  C  Q  S  Q  K  S  L  G  K  K  E  I  *  E  S  R  *  M  L  S  I  Q  Q  G  S  Q  K  H  R  N  L  T  S  G  E  F  S  A  R  G  D  H  M  N  I  G  I  Q  I  T  R  G  D  Y  M  N  T  G  R  *  S  R  M  Q  T  L  D  V  N  I  G  Y  A  Y  C  L  Q  L  E  L  *  I  L  G  R  S  S  S  L  N  V  L  G  T  K  D  F  W  G  S  S  D  S  G  G  I  N  F  F  I  G  R  G  H  I  P  P  H  Y  L  I  D  K  I  *  M  M  L  M  Q  A  L  L  F  C  C  L  *  F  *  G  S  D  Q  D  K  N  A  L  G  S  C  I  *  V  G  S  M  L  N  Y  V  H  Y  M  L  T  *  S  K  I  Y  V  F  L  P  *  E  N  P  L  L  F  S  W  S  L  F  F  F  F  L  H  H  V  L  K  N  D  S  R  S  D  I  L  K  L  L  Q  N  P  L  F  L  S  S  T  I  L  W  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0128E05.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44289" stop="44914"/>
                    <exon start="50554" stop="50995"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1065</number_coding_nucleotides>
                  <number_encoded_amino_acids>355</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLPNFIISTEETAIATGKMGVDYYNILKVNRNASEEDLRKAYRRLAMIWHPDKNLGTNKYEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEALKTGQVPPPPRGGPHNMRNPHPNPSFRFNPRDADDIYAELFGASSSENNGRARKTRDGFFRSTTNGGAEFSGAGNSSTGGLRKAAPVENALLCRLEDLYKGAKKKMKISRTVLDSSGKLRTLEEILTIDIKPGWKKGTKVTFPEKGNEEPGVIPADLVFVIEEKPHHVYVRDGNDLTVNQEISLLEALTGKTLELTTLDGRNLIIPLTDIVKPGHEIIVPNEGMPISKEPRKKGNLRIKIDVKYPTRLTEAQKSDLRRVLGQG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="60384" PGL_stop="62939"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60384" e_stop="60525"/>
            <exon e_start="61261" e_stop="61452"/>
            <exon e_start="61626" e_stop="61746"/>
            <exon e_start="61846" e_stop="61937"/>
            <exon e_start="62029" e_stop="62125"/>
            <exon e_start="62359" e_stop="62939"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.824" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.788" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60384" e_stop="60525" e_length="142"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="60526" i_stop="61260" i_length="735"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61261" e_stop="61452" e_length="192"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.998">
            <gDNA_intron_boundary i_start="61453" i_stop="61625" i_length="173"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61626" e_stop="61746" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.824" acc_prob="0.950">
            <gDNA_intron_boundary i_start="61747" i_stop="61845" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61846" e_stop="61937" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.947">
            <gDNA_intron_boundary i_start="61938" i_stop="62028" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="62029" e_stop="62125" e_length="97"/>
          </exon>
          <intron i_serial="5" don_prob="0.788" acc_prob="0.992">
            <gDNA_intron_boundary i_start="62126" i_stop="62358" i_length="233"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="62359" e_stop="62939" e_length="581"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60384" stop="60525"/>
              <exon start="61261" stop="61452"/>
              <exon start="61626" stop="61746"/>
              <exon start="61846" stop="61937"/>
              <exon start="62029" stop="62125"/>
              <exon start="62359" stop="62929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60385" stop="60525"/>
              <exon start="61261" stop="61452"/>
              <exon start="61626" stop="61746"/>
              <exon start="61846" stop="61937"/>
              <exon start="62029" stop="62125"/>
              <exon start="62359" stop="62414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60385" stop="60525"/>
              <exon start="61261" stop="61452"/>
              <exon start="61626" stop="61746"/>
              <exon start="61846" stop="61937"/>
              <exon start="62029" stop="62124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60385" stop="60525"/>
              <exon start="61261" stop="61451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60396" stop="60525"/>
              <exon start="61261" stop="61452"/>
              <exon start="61626" stop="61746"/>
              <exon start="61846" stop="61937"/>
              <exon start="62029" stop="62052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60396" stop="60525"/>
              <exon start="61261" stop="61447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60420" stop="60525"/>
              <exon start="61261" stop="61452"/>
              <exon start="61626" stop="61746"/>
              <exon start="61846" stop="61937"/>
              <exon start="62029" stop="62068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60440" stop="60525"/>
              <exon start="61261" stop="61452"/>
              <exon start="61626" stop="61746"/>
              <exon start="61846" stop="61937"/>
              <exon start="62029" stop="62125"/>
              <exon start="62359" stop="62367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60459" stop="60525"/>
              <exon start="61261" stop="61452"/>
              <exon start="61626" stop="61697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60499" stop="60525"/>
              <exon start="61261" stop="61452"/>
              <exon start="61626" stop="61732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60502" stop="60525"/>
              <exon start="61261" stop="61452"/>
              <exon start="61626" stop="61746"/>
              <exon start="61846" stop="61937"/>
              <exon start="62029" stop="62125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61261" stop="61452"/>
              <exon start="61626" stop="61746"/>
              <exon start="61846" stop="61937"/>
              <exon start="62029" stop="62125"/>
              <exon start="62359" stop="62614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61268" stop="61452"/>
              <exon start="61626" stop="61746"/>
              <exon start="61846" stop="61937"/>
              <exon start="62029" stop="62125"/>
              <exon start="62359" stop="62660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61638" stop="61746"/>
              <exon start="61846" stop="61937"/>
              <exon start="62029" stop="62125"/>
              <exon start="62359" stop="62504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61675" stop="61746"/>
              <exon start="61846" stop="61937"/>
              <exon start="62029" stop="62125"/>
              <exon start="62359" stop="62569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61718" stop="61746"/>
              <exon start="61846" stop="61937"/>
              <exon start="62029" stop="62125"/>
              <exon start="62359" stop="62936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61738" stop="61746"/>
              <exon start="61846" stop="61937"/>
              <exon start="62029" stop="62125"/>
              <exon start="62359" stop="62733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62052" stop="62125"/>
              <exon start="62359" stop="62939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62359" stop="62938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62385" stop="62929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349761" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62385" stop="62929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351943" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62432" stop="62929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62494" stop="62925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278994" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCCATTACAATTTCCACATACTTTCTTCTTCATCAAGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCG : AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG : GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG : TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG : GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG : CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTAATTGTACCTG</gDNA_template>
            <first_frame> L  H  Y  N  F  H  I  L  S  S  S  S  S  L  F  P  P  *  T  Y  P  Q  I  Y  K  L  T  H  L  N  Y  R  N  T  H  F  D  S  S  L  L  R  *  L  C  C  F   : E  Y  G  Q  S  I  G  L  C  T  S  *  S  I  H  R  R  N  Y  R  A  V  W  Q  V  S  R  C  A  S  A  R  L  P  L  P  A  L  V  L  R  I  P  V  S  W  P  S  L  P  Q  G  A  T  I  G  C  S  L  R  D  K  D  K   : G  *  C  V  C  Q  C  C  G  I  N  S  V  P  C  P  G  R  Q  S  K  *  C  F  L  Q  T  K  Q  H  *  G  S  N  S  G  L  C  F  *  C :   H  *  S  K  C  S  K  T  Q  S  *  *  C  F  R  A  E  K  *  N  C  Q  G  C  R  G  *  T  *  E   : G  Y  V  G  L  W  I  *  N  C  S  N  T  Y  S  *  Y  R  T  R  *  E  C  E  E  S  Y  E  *  N  Q  C  C :   C  S  A  E  G  G  C  *  *  E  S  R  G  G  E  D  F  A  N  *  E  G  *  R  R  G  R  I  K  V  S  F  R  V  R  Y  C  T  T  A  S  S  D  C  G  W  F  E  R  Q  R  A  R  I  L  S  E  C  A  W  N  L  S  K  R  C  N  G  H  G  P  F  N  P  V  L  *  H  H  E  R  N  W  R  F  Q  *  I  I  C  C  L  P  S  S  W  A  W  C  C  K  R  C  G  K  P  D  P  R  W  T  P  S  S  F  C  E  P  L  N  V  S  T  I  S  E  M  L  I  V  F  H  L  K  Q  P  F  S  F  C  V  Y  F  L  L  V  W  I  C  L  A  S  L  T  L  Y  L  *  M  P  L  V  S  Y  I  V  K  N  L  I  S  Q  T  F  E  E  L  Y  T  I  N  R  W  M  *  Y  F  S  S  L  I  V  P  </first_frame>
            <second_frame>  S  I  T  I  S  T  Y  F  L  L  H  Q  V  S  F  L  H  R  L  I  P  K  Y  I  N  S  P  I  L  T  I  E  I  P  I  S  I  L  H  S  F  A  S  F  V  A  S  :  S  M  G  N  L  L  G  C  V  Q  V  D  Q  S  T  V  A  I  T  E  Q  F  G  K  Y  Q  D  V  L  Q  P  G  C  H  C  L  P  W  C  F  G  F  Q  L  A  G  H  L  S  L  R  V  Q  Q  L  D  V  R  C  E  T  K  T  K  :  D  N  V  F  V  N  V  V  A  S  I  Q  Y  R  A  L  A  D  K  A  N  D  A  F  Y  K  L  S  N  T  K  G  Q  I  Q  A  Y  V  F  D   : V  I  R  A  S  V  P  K  L  N  L  D  D  V  F  E  Q  K  N  E  I  A  K  A  V  E  D  E  L  E  K  :  A  M  S  A  Y  G  Y  E  I  V  Q  T  L  I  V  D  I  E  P  D  E  N  V  K  R  A  M  N  E  I  N  A   : A  A  R  L  R  V  A  A  N  E  K  A  E  A  E  K  I  L  Q  I  K  R  A  E  G  E  A  E  S  K  Y  L  S  G  L  G  I  A  R  Q  R  Q  A  I  V  D  G  L  R  D  S  V  L  G  F  S  V  N  V  P  G  T  S  A  K  D  V  M  D  M  V  L  L  T  Q  Y  F  D  T  M  K  E  I  G  A  S  S  K  S  S  A  V  F  L  P  H  G  P  G  A  V  R  D  V  A  S  Q  I  R  D  G  L  L  Q  A  S  V  N  H  *  M  F  L  L  Y  Q  K  C  *  L  C  F  T  *  S  S  L  F  H  F  V  F  T  F  C  *  C  G  Y  V  W  R  V  *  L  C  I  C  E  C  L  *  Y  L  I  L  *  R  I  *  Y  P  R  P  L  K  N  Y  I  L  L  I  D  G  C  D  I  S  P  R  *  L  Y  L </second_frame>
            <third_frame>   P  L  Q  F  P  H  T  F  F  F  I  K  S  L  S  S  I  D  L  S  P  N  I  *  T  H  P  S  *  L  S  K  Y  P  F  R  F  F  T  P  S  L  A  L  L  L  R :   V  W  A  I  Y  W  A  V  Y  K  L  I  N  P  P  S  Q  L  Q  S  S  L  A  S  I  K  M  C  F  S  Q  V  A  T  A  C  L  G  A  S  D  S  S  *  L  A  I  S  P  S  G  C  N  N  W  M  F  A  A  R  Q  R  Q  R :   I  M  C  L  S  M  L  W  H  Q  F  S  T  V  P  W  Q  T  K  Q  M  M  L  S  T  N  *  A  T  L  R  V  K  F  R  P  M  F  L  M  :  S  L  E  Q  V  F  Q  N  S  I  L  M  M  F  S  S  R  K  M  K  L  P  R  L  S  R  M  N  L  R  R :   L  C  R  L  M  D  M  K  L  F  K  H  L  *  L  I  *  N  Q  M  R  M  *  R  E  L  *  M  K  S  M  L  :  L  L  G  *  G  W  L  L  M  R  K  Q  R  R  R  R  F  C  K  L  R  G  L  K  E  R  Q  N  Q  S  I  F  Q  G  *  V  L  H  D  S  V  K  R  L  W  M  V  *  E  T  A  C  S  D  S  Q  *  M  C  L  E  P  Q  Q  K  M  *  W  T  W  S  F  *  P  S  T  L  T  P  *  K  K  L  A  L  P  V  N  H  L  L  S  S  F  L  M  G  L  V  L  *  E  M  W  Q  A  R  S  A  M  D  S  F  K  L  L  *  T  I  K  C  F  Y  Y  I  R  N  V  N  C  V  S  L  E  A  A  F  F  I  L  C  L  L  S  V  S  V  D  M  F  G  E  F  D  F  V  F  V  N  A  S  S  I  L  Y  C  K  E  F  N  I  P  D  L  *  R  I  I  Y  Y  *  *  M  D  V  I  F  L  L  V  N  C  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0128E05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60385" stop="60525"/>
                    <exon start="61261" stop="61452"/>
                    <exon start="61626" stop="61746"/>
                    <exon start="61846" stop="61937"/>
                    <exon start="62029" stop="62125"/>
                    <exon start="62359" stop="62717"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>999</number_coding_nucleotides>
                  <number_encoded_amino_acids>333</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SITISTYFLLHQVSFLHRLIPKYINSPILTIEIPISILHSFASFVASSMGNLLGCVQVDQSTVAITEQFGKYQDVLQPGCHCLPWCFGFQLAGHLSLRVQQLDVRCETKTKDNVFVNVVASIQYRALADKANDAFYKLSNTKGQIQAYVFDVIRASVPKLNLDDVFEQKNEIAKAVEDELEKAMSAYGYEIVQTLIVDIEPDENVKRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTSAKDVMDMVLLTQYFDTMKEIGASSKSSAVFLPHGPGAVRDVASQIRDGLLQASVNH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="62027" e_stop="62125"/>
            <exon e_start="62359" e_stop="62939"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.788" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62027" e_stop="62125" e_length="99"/>
          </exon>
          <intron i_serial="1" don_prob="0.788" acc_prob="0.992">
            <gDNA_intron_boundary i_start="62126" i_stop="62358" i_length="233"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="62359" e_stop="62939" e_length="581"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62027" stop="62125"/>
              <exon start="62359" stop="62936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62052" stop="62125"/>
              <exon start="62359" stop="62939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62359" stop="62938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62385" stop="62929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349761" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62385" stop="62929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351943" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62432" stop="62929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62494" stop="62925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278994" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG : CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTAATTGTACCTG</gDNA_template>
            <first_frame> R  L  C  R  L  M  D  M  K  L  F  K  H  L  *  L  I  *  N  Q  M  R  M  *  R  E  L  *  M  K  S  M  L  :  L  L  G  *  G  W  L  L  M  R  K  Q  R  R  R  R  F  C  K  L  R  G  L  K  E  R  Q  N  Q  S  I  F  Q  G  *  V  L  H  D  S  V  K  R  L  W  M  V  *  E  T  A  C  S  D  S  Q  *  M  C  L  E  P  Q  Q  K  M  *  W  T  W  S  F  *  P  S  T  L  T  P  *  K  K  L  A  L  P  V  N  H  L  L  S  S  F  L  M  G  L  V  L  *  E  M  W  Q  A  R  S  A  M  D  S  F  K  L  L  *  T  I  K  C  F  Y  Y  I  R  N  V  N  C  V  S  L  E  A  A  F  F  I  L  C  L  L  S  V  S  V  D  M  F  G  E  F  D  F  V  F  V  N  A  S  S  I  L  Y  C  K  E  F  N  I  P  D  L  *  R  I  I  Y  Y  *  *  M  D  V  I  F  L  L  V  N  C  T   </first_frame>
            <second_frame>  G  Y  V  G  L  W  I  *  N  C  S  N  T  Y  S  *  Y  R  T  R  *  E  C  E  E  S  Y  E  *  N  Q  C  C :   C  S  A  E  G  G  C  *  *  E  S  R  G  G  E  D  F  A  N  *  E  G  *  R  R  G  R  I  K  V  S  F  R  V  R  Y  C  T  T  A  S  S  D  C  G  W  F  E  R  Q  R  A  R  I  L  S  E  C  A  W  N  L  S  K  R  C  N  G  H  G  P  F  N  P  V  L  *  H  H  E  R  N  W  R  F  Q  *  I  I  C  C  L  P  S  S  W  A  W  C  C  K  R  C  G  K  P  D  P  R  W  T  P  S  S  F  C  E  P  L  N  V  S  T  I  S  E  M  L  I  V  F  H  L  K  Q  P  F  S  F  C  V  Y  F  L  L  V  W  I  C  L  A  S  L  T  L  Y  L  *  M  P  L  V  S  Y  I  V  K  N  L  I  S  Q  T  F  E  E  L  Y  T  I  N  R  W  M  *  Y  F  S  S  L  I  V  P  </second_frame>
            <third_frame>   A  M  S  A  Y  G  Y  E  I  V  Q  T  L  I  V  D  I  E  P  D  E  N  V  K  R  A  M  N  E  I  N  A   : A  A  R  L  R  V  A  A  N  E  K  A  E  A  E  K  I  L  Q  I  K  R  A  E  G  E  A  E  S  K  Y  L  S  G  L  G  I  A  R  Q  R  Q  A  I  V  D  G  L  R  D  S  V  L  G  F  S  V  N  V  P  G  T  S  A  K  D  V  M  D  M  V  L  L  T  Q  Y  F  D  T  M  K  E  I  G  A  S  S  K  S  S  A  V  F  L  P  H  G  P  G  A  V  R  D  V  A  S  Q  I  R  D  G  L  L  Q  A  S  V  N  H  *  M  F  L  L  Y  Q  K  C  *  L  C  F  T  *  S  S  L  F  H  F  V  F  T  F  C  *  C  G  Y  V  W  R  V  *  L  C  I  C  E  C  L  *  Y  L  I  L  *  R  I  *  Y  P  R  P  L  K  N  Y  I  L  L  I  D  G  C  D  I  S  P  R  *  L  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0128E05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62029" stop="62125"/>
                    <exon start="62359" stop="62717"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMSAYGYEIVQTLIVDIEPDENVKRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTSAKDVMDMVLLTQYFDTMKEIGASSKSSAVFLPHGPGAVRDVASQIRDGLLQASVNH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="70012" PGL_stop="74844"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70012" e_stop="70092"/>
            <exon e_start="70244" e_stop="70345"/>
            <exon e_start="71913" e_stop="72525"/>
            <exon e_start="74611" e_stop="74661"/>
            <exon e_start="74779" e_stop="74844"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.576" e_score="1.000"/>
          <exon-intron don_prob="0.584" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70012" e_stop="70092" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.576">
            <gDNA_intron_boundary i_start="70093" i_stop="70243" i_length="151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70244" e_stop="70345" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.584" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70346" i_stop="71912" i_length="1567"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71913" e_stop="72525" e_length="613"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="72526" i_stop="74610" i_length="2085"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74611" e_stop="74661" e_length="51"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="74662" i_stop="74778" i_length="117"/>
          </intron>
          <exon e_serial="5" e_score="0.981">
            <gDNA_exon_boundary e_start="74779" e_stop="74844" e_length="66"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70012" stop="70092"/>
              <exon start="70244" stop="70345"/>
              <exon start="71913" stop="72525"/>
              <exon start="74611" stop="74661"/>
              <exon start="74779" stop="74844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70013" stop="70092"/>
              <exon start="70244" stop="70345"/>
              <exon start="71913" stop="72525"/>
              <exon start="74611" stop="74661"/>
              <exon start="74779" stop="74832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70013" stop="70092"/>
              <exon start="70244" stop="70345"/>
              <exon start="71913" stop="72525"/>
              <exon start="74611" stop="74636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736674" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGTGACCTTGAGGTTGAAAACGGTGGCACTGCCCCTCGTATTCACTCAATGGATGAGTACTTCATGACTGAAGTTGACAAG : GTTGAGGAGAGTGAGGTTTTGCGATCTTCTGGTTCTGTCAGGGGCAAAAAGATGGTGACAAAGAAGGTTATCGAATACTGCTATGAACCTGAGATGGAGGAG : GCTTATCGTTCAAGCATGTTGAAGGCTTTCAAAAAGACCCTGGATGAGGGGGCTTTCTCCTTCGTAATTGGTATGGTATTTTTGGGGCAAGATAGCTCTTACTCTGTAATTCCACATATCTTCTTTTTGTCCATAATCTCAGACTGACATGTGAAATGGTTTGCATCACTGTTTCCTCTTTCAGCTGGATGTCTATTCTTTTGTTTATTGTGTCTGTGAGATTCTCCAAAATTTGCTAGTGAAATGATTACATGCTGCTGTCAGTTGTTTTCTTGTGTCATCTGTTGCTCTCTATTGGAGCATATTTCTATAGAAAACCTCCATTTTGTTGGATTTAGGAAACTTGAAGGTAGGTAGCATCCCATAGGTTTCTTGATAATAGCTAGCACATTGGTTCTTCAAGTCATGATAGATTGTCTAGTTAAAATGTCACCCATAGTTTAATTATAGATTAAGTGGTGATGCAGTGCCTTGCACTGCCTTCAGTTTACTAACTACAGATGCAGTTTTGTTCGGCAATTGACCCATTTGTTGCTGGTATTTGTGCCTCATCTTAGTGGATGACCGCAATCTGCGGGTAGCTGATTTTGCTCAGTTTTGGGCATTTGCGAAG : AGATCTGGCTATGAAGTGTACTTGCTAGAAGCAGCTTATAAGGACCCAGCG : GGTTGTGCAGCAAGGAACGTGCATGGTTTCATGCAGGATGATGTACAAAAGATGGCTGGCCAATGG</gDNA_template>
            <first_frame> R  D  L  E  V  E  N  G  G  T  A  P  R  I  H  S  M  D  E  Y  F  M  T  E  V  D  K  :  V  E  E  S  E  V  L  R  S  S  G  S  V  R  G  K  K  M  V  T  K  K  V  I  E  Y  C  Y  E  P  E  M  E  E  :  A  Y  R  S  S  M  L  K  A  F  K  K  T  L  D  E  G  A  F  S  F  V  I  G  M  V  F  L  G  Q  D  S  S  Y  S  V  I  P  H  I  F  F  L  S  I  I  S  D  *  H  V  K  W  F  A  S  L  F  P  L  S  A  G  C  L  F  F  C  L  L  C  L  *  D  S  P  K  F  A  S  E  M  I  T  C  C  C  Q  L  F  S  C  V  I  C  C  S  L  L  E  H  I  S  I  E  N  L  H  F  V  G  F  R  K  L  E  G  R  *  H  P  I  G  F  L  I  I  A  S  T  L  V  L  Q  V  M  I  D  C  L  V  K  M  S  P  I  V  *  L  *  I  K  W  *  C  S  A  L  H  C  L  Q  F  T  N  Y  R  C  S  F  V  R  Q  L  T  H  L  L  L  V  F  V  P  H  L  S  G  *  P  Q  S  A  G  S  *  F  C  S  V  L  G  I  C  E   : E  I  W  L  *  S  V  L  A  R  S  S  L  *  G  P  S   : G  L  C  S  K  E  R  A  W  F  H  A  G  *  C  T  K  D  G  W  P  M  </first_frame>
            <second_frame>  V  T  L  R  L  K  T  V  A  L  P  L  V  F  T  Q  W  M  S  T  S  *  L  K  L  T  R :   L  R  R  V  R  F  C  D  L  L  V  L  S  G  A  K  R  W  *  Q  R  R  L  S  N  T  A  M  N  L  R  W  R  R :   L  I  V  Q  A  C  *  R  L  S  K  R  P  W  M  R  G  L  S  P  S  *  L  V  W  Y  F  W  G  K  I  A  L  T  L  *  F  H  I  S  S  F  C  P  *  S  Q  T  D  M  *  N  G  L  H  H  C  F  L  F  Q  L  D  V  Y  S  F  V  Y  C  V  C  E  I  L  Q  N  L  L  V  K  *  L  H  A  A  V  S  C  F  L  V  S  S  V  A  L  Y  W  S  I  F  L  *  K  T  S  I  L  L  D  L  G  N  L  K  V  G  S  I  P  *  V  S  *  *  *  L  A  H  W  F  F  K  S  *  *  I  V  *  L  K  C  H  P  *  F  N  Y  R  L  S  G  D  A  V  P  C  T  A  F  S  L  L  T  T  D  A  V  L  F  G  N  *  P  I  C  C  W  Y  L  C  L  I  L  V  D  D  R  N  L  R  V  A  D  F  A  Q  F  W  A  F  A  K  :  R  S  G  Y  E  V  Y  L  L  E  A  A  Y  K  D  P  A  :  G  C  A  A  R  N  V  H  G  F  M  Q  D  D  V  Q  K  M  A  G  Q  W </second_frame>
            <third_frame>   *  P  *  G  *  K  R  W  H  C  P  S  Y  S  L  N  G  *  V  L  H  D  *  S  *  Q   : G  *  G  E  *  G  F  A  I  F  W  F  C  Q  G  Q  K  D  G  D  K  E  G  Y  R  I  L  L  *  T  *  D  G  G   : G  L  S  F  K  H  V  E  G  F  Q  K  D  P  G  *  G  G  F  L  L  R  N  W  Y  G  I  F  G  A  R  *  L  L  L  C  N  S  T  Y  L  L  F  V  H  N  L  R  L  T  C  E  M  V  C  I  T  V  S  S  F  S  W  M  S  I  L  L  F  I  V  S  V  R  F  S  K  I  C  *  *  N  D  Y  M  L  L  S  V  V  F  L  C  H  L  L  L  S  I  G  A  Y  F  Y  R  K  P  P  F  C  W  I  *  E  T  *  R  *  V  A  S  H  R  F  L  D  N  S  *  H  I  G  S  S  S  H  D  R  L  S  S  *  N  V  T  H  S  L  I  I  D  *  V  V  M  Q  C  L  A  L  P  S  V  Y  *  L  Q  M  Q  F  C  S  A  I  D  P  F  V  A  G  I  C  A  S  S  *  W  M  T  A  I  C  G  *  L  I  L  L  S  F  G  H  L  R  R :   D  L  A  M  K  C  T  C  *  K  Q  L  I  R  T  Q  R :   V  V  Q  Q  G  T  C  M  V  S  C  R  M  M  Y  K  R  W  L  A  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0128E05.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70012" stop="70092"/>
                    <exon start="70244" stop="70345"/>
                    <exon start="71913" stop="72059"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDLEVENGGTAPRIHSMDEYFMTEVDKVEESEVLRSSGSVRGKKMVTKKVIEYCYEPEMEEAYRSSMLKAFKKTLDEGAFSFVIGMVFLGQDSSYSVIPHIFFLSIISD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0128E05.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72436" stop="72525"/>
                    <exon start="74611" stop="74661"/>
                    <exon start="74779" stop="74844"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PICCWYLCLILVDDRNLRVADFAQFWAFAKRSGYEVYLLEAAYKDPAGCAARNVHGFMQDDVQKMAGQW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="77380" PGL_stop="80577"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77380" e_stop="77499"/>
            <exon e_start="78078" e_stop="78283"/>
            <exon e_start="79708" e_stop="79791"/>
            <exon e_start="80004" e_stop="80577"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.883" acc_prob="0.999" e_score="0.982"/>
          <exon-intron don_prob="0.977" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.951" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="77380" e_stop="77499" e_length="120"/>
          </exon>
          <intron i_serial="1" don_prob="0.883" acc_prob="0.999">
            <gDNA_intron_boundary i_start="77500" i_stop="78077" i_length="578"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78078" e_stop="78283" e_length="206"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.999">
            <gDNA_intron_boundary i_start="78284" i_stop="79707" i_length="1424"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79708" e_stop="79791" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.967" acc_prob="0.951">
            <gDNA_intron_boundary i_start="79792" i_stop="80003" i_length="212"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80004" e_stop="80577" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77380" stop="77499"/>
              <exon start="78078" stop="78283"/>
              <exon start="79708" stop="79791"/>
              <exon start="80004" stop="80392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77380" stop="77499"/>
              <exon start="78078" stop="78283"/>
              <exon start="79708" stop="79791"/>
              <exon start="80004" stop="80202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77391" stop="77499"/>
              <exon start="78078" stop="78283"/>
              <exon start="79708" stop="79791"/>
              <exon start="80004" stop="80373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78210" stop="78283"/>
              <exon start="79708" stop="79791"/>
              <exon start="80004" stop="80577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80033" stop="80557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80230" stop="80557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223474" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGATCTGCAGGTAGACATGGATATGGAAGATGATGACTCATTTGGAGTGCCTTCCACTTTAGAGGAAGAGAATATTGAGAAGTTTACAGTACCTCCCCAAGAGGATATTCCAGCATGTG : GCGATGTAAAGGATGATCAGGTTTTAGACCATGAGGAGGACCACCGAATAACTGAAGTAAAAGAATTGGCAAAGAGTAAATGGTCATCTGATTTGGATGAAGATAATACTCGAAGAAATAAAGATGCCACTAGAAACATAAATGCTCTCTCTGGGTTGATACAATCTTACAGCAAGGAAGGAAAGTTCGTACGTTGGGGTGACCAG : GTAACCAAAAGAGGCTTTTCTATAGGGGCAGCAAAAGCAACCAATGTATCTTTAATAATTGGTCCTGGTGCAGGATACAACTTG : AAGTCAAACCCTTTACCTGACGAAGAGAAGTTGACATCAACTCGACATAGTGGTGAACCAAAGAGGCAGAACATATTTCAAGAGAGATTACGAGCAGAGCACGAGTCGTTTAGGGCTGTTTTCGAGTCCTTCAGAACTGGTTCTGACAAGAGGCGGCCGCGGATATCTGGGCTTAATGCTGAAGATGAATAGTGCATCTGTAGATAGGGGTTTAAAATTGCATATTTGCTATTTTATGTTTTGCTAATCCTTTGCCATAGAGGATGACTGCCCAGTGTCTTACGCTGGGGGAGGGTTTAGCCATTTCTATTGTAATATAGTGTAATTCGTGTAGCAAAATAGGTAGTTGATGGCCTTGACTGGAGGGCTATATGCTATGGGTCCATTGCCTCTGTACTACTGGAAATTTTGGTAATGAAGGTTTTCAATGATAGAAGTGGTTCATTAAGCAATAAATGGATGTATGGAAGACAAATATCTTGTAATCATTGGCTTGGCTCATGAAAACAATTTTGATTCGGGATGTTTAAGAGCCCGTTTGGACTAGCTTAAAAGTTGGTCAAAGTTACTTTTA</gDNA_template>
            <first_frame> W  I  C  R  *  T  W  I  W  K  M  M  T  H  L  E  C  L  P  L  *  R  K  R  I  L  R  S  L  Q  Y  L  P  K  R  I  F  Q  H  V  :  A  M  *  R  M  I  R  F  *  T  M  R  R  T  T  E  *  L  K  *  K  N  W  Q  R  V  N  G  H  L  I  W  M  K  I  I  L  E  E  I  K  M  P  L  E  T  *  M  L  S  L  G  *  Y  N  L  T  A  R  K  E  S  S  Y  V  G  V  T  R :   *  P  K  E  A  F  L  *  G  Q  Q  K  Q  P  M  Y  L  *  *  L  V  L  V  Q  D  T  T  * :   S  Q  T  L  Y  L  T  K  R  S  *  H  Q  L  D  I  V  V  N  Q  R  G  R  T  Y  F  K  R  D  Y  E  Q  S  T  S  R  L  G  L  F  S  S  P  S  E  L  V  L  T  R  G  G  R  G  Y  L  G  L  M  L  K  M  N  S  A  S  V  D  R  G  L  K  L  H  I  C  Y  F  M  F  C  *  S  F  A  I  E  D  D  C  P  V  S  Y  A  G  G  G  F  S  H  F  Y  C  N  I  V  *  F  V  *  Q  N  R  *  L  M  A  L  T  G  G  L  Y  A  M  G  P  L  P  L  Y  Y  W  K  F  W  *  *  R  F  S  M  I  E  V  V  H  *  A  I  N  G  C  M  E  D  K  Y  L  V  I  I  G  L  A  H  E  N  N  F  D  S  G  C  L  R  A  R  L  D  *  L  K  S  W  S  K  L  L  L </first_frame>
            <second_frame>  G  S  A  G  R  H  G  Y  G  R  *  *  L  I  W  S  A  F  H  F  R  G  R  E  Y  *  E  V  Y  S  T  S  P  R  G  Y  S  S  M  W :   R  C  K  G  *  S  G  F  R  P  *  G  G  P  P  N  N  *  S  K  R  I  G  K  E  *  M  V  I  *  F  G  *  R  *  Y  S  K  K  *  R  C  H  *  K  H  K  C  S  L  W  V  D  T  I  L  Q  Q  G  R  K  V  R  T  L  G  *  P   : G  N  Q  K  R  L  F  Y  R  G  S  K  S  N  Q  C  I  F  N  N  W  S  W  C  R  I  Q  L   : E  V  K  P  F  T  *  R  R  E  V  D  I  N  S  T  *  W  *  T  K  E  A  E  H  I  S  R  E  I  T  S  R  A  R  V  V  *  G  C  F  R  V  L  Q  N  W  F  *  Q  E  A  A  A  D  I  W  A  *  C  *  R  *  I  V  H  L  *  I  G  V  *  N  C  I  F  A  I  L  C  F  A  N  P  L  P  *  R  M  T  A  Q  C  L  T  L  G  E  G  L  A  I  S  I  V  I  *  C  N  S  C  S  K  I  G  S  *  W  P  *  L  E  G  Y  M  L  W  V  H  C  L  C  T  T  G  N  F  G  N  E  G  F  Q  *  *  K  W  F  I  K  Q  *  M  D  V  W  K  T  N  I  L  *  S  L  A  W  L  M  K  T  I  L  I  R  D  V  *  E  P  V  W  T  S  L  K  V  G  Q  S  Y  F   </second_frame>
            <third_frame>   D  L  Q  V  D  M  D  M  E  D  D  D  S  F  G  V  P  S  T  L  E  E  E  N  I  E  K  F  T  V  P  P  Q  E  D  I  P  A  C   : G  D  V  K  D  D  Q  V  L  D  H  E  E  D  H  R  I  T  E  V  K  E  L  A  K  S  K  W  S  S  D  L  D  E  D  N  T  R  R  N  K  D  A  T  R  N  I  N  A  L  S  G  L  I  Q  S  Y  S  K  E  G  K  F  V  R  W  G  D  Q  :  V  T  K  R  G  F  S  I  G  A  A  K  A  T  N  V  S  L  I  I  G  P  G  A  G  Y  N  L  :  K  S  N  P  L  P  D  E  E  K  L  T  S  T  R  H  S  G  E  P  K  R  Q  N  I  F  Q  E  R  L  R  A  E  H  E  S  F  R  A  V  F  E  S  F  R  T  G  S  D  K  R  R  P  R  I  S  G  L  N  A  E  D  E  *  C  I  C  R  *  G  F  K  I  A  Y  L  L  F  Y  V  L  L  I  L  C  H  R  G  *  L  P  S  V  L  R  W  G  R  V  *  P  F  L  L  *  Y  S  V  I  R  V  A  K  *  V  V  D  G  L  D  W  R  A  I  C  Y  G  S  I  A  S  V  L  L  E  I  L  V  M  K  V  F  N  D  R  S  G  S  L  S  N  K  W  M  Y  G  R  Q  I  S  C  N  H  W  L  G  S  *  K  Q  F  *  F  G  M  F  K  S  P  F  G  L  A  *  K  L  V  K  V  T  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0128E05.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77382" stop="77499"/>
                    <exon start="78078" stop="78283"/>
                    <exon start="79708" stop="79791"/>
                    <exon start="80004" stop="80195"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLQVDMDMEDDDSFGVPSTLEEENIEKFTVPPQEDIPACGDVKDDQVLDHEEDHRITEVKELAKSKWSSDLDEDNTRRNKDATRNINALSGLIQSYSKEGKFVRWGDQVTKRGFSIGAAKATNVSLIIGPGAGYNLKSNPLPDEEKLTSTRHSGEPKRQNIFQERLRAEHESFRAVFESFRTGSDKRRPRISGLNAEDE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="85038" PGL_stop="87493"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85038" e_stop="85122"/>
            <exon e_start="85347" e_stop="85421"/>
            <exon e_start="85509" e_stop="85577"/>
            <exon e_start="86358" e_stop="86476"/>
            <exon e_start="86578" e_stop="86635"/>
            <exon e_start="86907" e_stop="87017"/>
            <exon e_start="87422" e_stop="87493"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.999" e_score="0.859"/>
          <exon-intron don_prob="0.987" acc_prob="0.952" e_score="0.960"/>
          <exon-intron don_prob="0.961" acc_prob="0.719" e_score="0.942"/>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.873" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.859">
            <gDNA_exon_boundary e_start="85038" e_stop="85122" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.999">
            <gDNA_intron_boundary i_start="85123" i_stop="85346" i_length="224"/>
          </intron>
          <exon e_serial="2" e_score="0.960">
            <gDNA_exon_boundary e_start="85347" e_stop="85421" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.952">
            <gDNA_intron_boundary i_start="85422" i_stop="85508" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="0.942">
            <gDNA_exon_boundary e_start="85509" e_stop="85577" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.961" acc_prob="0.719">
            <gDNA_intron_boundary i_start="85578" i_stop="86357" i_length="780"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="86358" e_stop="86476" e_length="119"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="86477" i_stop="86577" i_length="101"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="86578" e_stop="86635" e_length="58"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.873">
            <gDNA_intron_boundary i_start="86636" i_stop="86906" i_length="271"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="86907" e_stop="87017" e_length="111"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="87018" i_stop="87421" i_length="404"/>
          </intron>
          <exon e_serial="7" e_score="0.986">
            <gDNA_exon_boundary e_start="87422" e_stop="87493" e_length="72"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85038" stop="85122"/>
              <exon start="85347" stop="85421"/>
              <exon start="85509" stop="85577"/>
              <exon start="86358" stop="86476"/>
              <exon start="86578" stop="86635"/>
              <exon start="86907" stop="87017"/>
              <exon start="87422" stop="87451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86370" stop="86476"/>
              <exon start="86578" stop="86635"/>
              <exon start="86907" stop="87017"/>
              <exon start="87422" stop="87493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745051" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACATGTGCCGGGTAAAGCGTCTTGGGACCATGCGGTTAACCGTGCTTTGCAAATAATAAGCAGAAATGACCCTGTACTGATCAAG : GTGGTACTTGCTCGTAGCACCAGAGTTGTGACAGCTGCAGATATTGATCCACTAACATGGCTGGCTTGCTTAAAG : GTTGAAGGAGAAAATGCATATCAGTTCTGTTTGCAACCTCCCCATTCGCCGGCATTCATTGGAAACACT : CCAGAGCAGCTATTTCATCGGGACCGCCTCAGCATTTGTAGTGAGGCTTTAGCTGGAACACGGGCTAGGGGTGGATCAGAGCTTCTGGATCTTAATATAGAACAGGATTTACTATCCAG : CGCTAAGGACCATAATGAGTTTGCTATAGTACGGGAGTGCATAAGAAGAAGATTGGAG : GCTGTGTGTTCAAGCGTTATAATTGAACCAAAGAAAGCAATAAGAAAATTTACAAGAGTTCAACATCTTTACGCTCGATTGAGGGGGAGACTCCAGGCTGAAGATGATGAG : TTTAAGATATTGTCATCCGTGCACCCTACTCCAGCAGTTTGTGGGTATCCTACAGAAGATGCACGGGCTTTT</gDNA_template>
            <first_frame> T  C  A  G  *  S  V  L  G  P  C  G  *  P  C  F  A  N  N  K  Q  K  *  P  C  T  D  Q   : G  G  T  C  S  *  H  Q  S  C  D  S  C  R  Y  *  S  T  N  M  A  G  L  L  K   : G  *  R  R  K  C  I  S  V  L  F  A  T  S  P  F  A  G  I  H  W  K  H   : S  R  A  A  I  S  S  G  P  P  Q  H  L  *  *  G  F  S  W  N  T  G  *  G  W  I  R  A  S  G  S  *  Y  R  T  G  F  T  I  Q  :  R  *  G  P  *  *  V  C  Y  S  T  G  V  H  K  K  K  I  G   : G  C  V  F  K  R  Y  N  *  T  K  E  S  N  K  K  I  Y  K  S  S  T  S  L  R  S  I  E  G  E  T  P  G  *  R  *  *   : V  *  D  I  V  I  R  A  P  Y  S  S  S  L  W  V  S  Y  R  R  C  T  G  F  </first_frame>
            <second_frame>  H  V  P  G  K  A  S  W  D  H  A  V  N  R  A  L  Q  I  I  S  R  N  D  P  V  L  I  K  :  V  V  L  A  R  S  T  R  V  V  T  A  A  D  I  D  P  L  T  W  L  A  C  L  K  :  V  E  G  E  N  A  Y  Q  F  C  L  Q  P  P  H  S  P  A  F  I  G  N  T  :  P  E  Q  L  F  H  R  D  R  L  S  I  C  S  E  A  L  A  G  T  R  A  R  G  G  S  E  L  L  D  L  N  I  E  Q  D  L  L  S  S :   A  K  D  H  N  E  F  A  I  V  R  E  C  I  R  R  R  L  E  :  A  V  C  S  S  V  I  I  E  P  K  K  A  I  R  K  F  T  R  V  Q  H  L  Y  A  R  L  R  G  R  L  Q  A  E  D  D  E  :  F  K  I  L  S  S  V  H  P  T  P  A  V  C  G  Y  P  T  E  D  A  R  A  F </second_frame>
            <third_frame>   M  C  R  V  K  R  L  G  T  M  R  L  T  V  L  C  K  *  *  A  E  M  T  L  Y  *  S  R :   W  Y  L  L  V  A  P  E  L  *  Q  L  Q  I  L  I  H  *  H  G  W  L  A  *  R :   L  K  E  K  M  H  I  S  S  V  C  N  L  P  I  R  R  H  S  L  E  T  L :   Q  S  S  Y  F  I  G  T  A  S  A  F  V  V  R  L  *  L  E  H  G  L  G  V  D  Q  S  F  W  I  L  I  *  N  R  I  Y  Y  P   : A  L  R  T  I  M  S  L  L  *  Y  G  S  A  *  E  E  D  W  R :   L  C  V  Q  A  L  *  L  N  Q  R  K  Q  *  E  N  L  Q  E  F  N  I  F  T  L  D  *  G  G  D  S  R  L  K  M  M  S :   L  R  Y  C  H  P  C  T  L  L  Q  Q  F  V  G  I  L  Q  K  M  H  G  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0128E05.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85039" stop="85122"/>
                    <exon start="85347" stop="85421"/>
                    <exon start="85509" stop="85577"/>
                    <exon start="86358" stop="86476"/>
                    <exon start="86578" stop="86635"/>
                    <exon start="86907" stop="87017"/>
                    <exon start="87422" stop="87493"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HVPGKASWDHAVNRALQIISRNDPVLIKVVLARSTRVVTAADIDPLTWLACLKVEGENAYQFCLQPPHSPAFIGNTPEQLFHRDRLSICSEALAGTRARGGSELLDLNIEQDLLSSAKDHNEFAIVRECIRRRLEAVCSSVIIEPKKAIRKFTRVQHLYARLRGRLQAEDDEFKILSSVHPTPAVCGYPTEDARAF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="91754" PGL_stop="91007"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91754" e_stop="91502"/>
            <exon e_start="91332" e_stop="91007"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.992"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="91754" e_stop="91502" e_length="253"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="91501" i_stop="91333" i_length="169"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="91332" e_stop="91007" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91754" stop="91502"/>
              <exon start="91332" stop="91007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91737" stop="91502"/>
              <exon start="91332" stop="91218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365164" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAATTTCAAGTAAAGAGAGAGAAGAATGTGCTTACAAATATAGCAACCCATAATTGAAAAATGGTAACTCTCATAAATAGGTCGAGTTTCTTTGTAATTTTGTGCACACTATTTTTTAGCATTGAGGCTAATATTGGAGAGTTTGATGAGGTGTGGAGGACTCGAGCCACCCAAGCAAATAAAAATGCTAAAGAATCCTATAATCCTAATCCTGAAAAAGTTGCAGCTAATTTCAACAAACATGTTCACAG : GTCGGAAGAAGGTAGCAATAGCACAAGAAGGGACTTGCACAAGTACAATGGTCCATGCGTGGCTACAAACCCTATTGATCGTTGCTGGAGATGTGACCCACATTGGGCTAAAAATCGCCAGAAGCTAGCAGATTGTGTTCTAGGATTTGGCCATCATACGACTGGTGGCAAAGGTGGCAAAATCTACGAAGTAACTGACCCTGGGGACACCGATATGGTGAATCCTAAGCAAGGGACACTGCGCCATGCAGTCATTCAGCCAGGGCCACTATGGATCATATTTGCACATCACATGGTCATTAAGCTAAACCAAGAACTTATTATGA</gDNA_template>
            <first_frame> K  N  F  K  *  R  E  R  R  M  C  L  Q  I  *  Q  P  I  I  E  K  W  *  L  S  *  I  G  R  V  S  L  *  F  C  A  H  Y  F  L  A  L  R  L  I  L  E  S  L  M  R  C  G  G  L  E  P  P  K  Q  I  K  M  L  K  N  P  I  I  L  I  L  K  K  L  Q  L  I  S  T  N  M  F  T   : G  R  K  K  V  A  I  A  Q  E  G  T  C  T  S  T  M  V  H  A  W  L  Q  T  L  L  I  V  A  G  D  V  T  H  I  G  L  K  I  A  R  S  *  Q  I  V  F  *  D  L  A  I  I  R  L  V  A  K  V  A  K  S  T  K  *  L  T  L  G  T  P  I  W  *  I  L  S  K  G  H  C  A  M  Q  S  F  S  Q  G  H  Y  G  S  Y  L  H  I  T  W  S  L  S  *  T  K  N  L  L  * </first_frame>
            <second_frame>  K  I  S  S  K  E  R  E  E  C  A  Y  K  Y  S  N  P  *  L  K  N  G  N  S  H  K  *  V  E  F  L  C  N  F  V  H  T  I  F  *  H  *  G  *  Y  W  R  V  *  *  G  V  E  D  S  S  H  P  S  K  *  K  C  *  R  I  L  *  S  *  S  *  K  S  C  S  *  F  Q  Q  T  C  S  Q  :  V  G  R  R  *  Q  *  H  K  K  G  L  A  Q  V  Q  W  S  M  R  G  Y  K  P  Y  *  S  L  L  E  M  *  P  T  L  G  *  K  S  P  E  A  S  R  L  C  S  R  I  W  P  S  Y  D  W  W  Q  R  W  Q  N  L  R  S  N  *  P  W  G  H  R  Y  G  E  S  *  A  R  D  T  A  P  C  S  H  S  A  R  A  T  M  D  H  I  C  T  S  H  G  H  *  A  K  P  R  T  Y  Y   </second_frame>
            <third_frame>   K  F  Q  V  K  R  E  K  N  V  L  T  N  I  A  T  H  N  *  K  M  V  T  L  I  N  R  S  S  F  F  V  I  L  C  T  L  F  F  S  I  E  A  N  I  G  E  F  D  E  V  W  R  T  R  A  T  Q  A  N  K  N  A  K  E  S  Y  N  P  N  P  E  K  V  A  A  N  F  N  K  H  V  H  R :   S  E  E  G  S  N  S  T  R  R  D  L  H  K  Y  N  G  P  C  V  A  T  N  P  I  D  R  C  W  R  C  D  P  H  W  A  K  N  R  Q  K  L  A  D  C  V  L  G  F  G  H  H  T  T  G  G  K  G  G  K  I  Y  E  V  T  D  P  G  D  T  D  M  V  N  P  K  Q  G  T  L  R  H  A  V  I  Q  P  G  P  L  W  I  I  F  A  H  H  M  V  I  K  L  N  Q  E  L  I  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0128E05.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91695" stop="91502"/>
                    <exon start="91332" stop="91008"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMVTLINRSSFFVILCTLFFSIEANIGEFDEVWRTRATQANKNAKESYNPNPEKVAANFNKHVHRSEEGSNSTRRDLHKYNGPCVATNPIDRCWRCDPHWAKNRQKLADCVLGFGHHTTGGKGGKIYEVTDPGDTDMVNPKQGTLRHAVIQPGPLWIIFAHHMVIKLNQELIM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="103228" PGL_stop="96786"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103228" e_stop="103124"/>
            <exon e_start="102319" e_stop="102240"/>
            <exon e_start="101926" e_stop="101823"/>
            <exon e_start="101614" e_stop="101547"/>
            <exon e_start="101405" e_stop="101348"/>
            <exon e_start="101222" e_stop="101109"/>
            <exon e_start="100753" e_stop="100670"/>
            <exon e_start="100329" e_stop="100225"/>
            <exon e_start="99957" e_stop="99844"/>
            <exon e_start="99503" e_stop="99372"/>
            <exon e_start="99275" e_stop="99186"/>
            <exon e_start="99029" e_stop="98940"/>
            <exon e_start="98601" e_stop="98392"/>
            <exon e_start="98310" e_stop="98200"/>
            <exon e_start="97312" e_stop="97233"/>
            <exon e_start="97145" e_stop="96786"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.858" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.334" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.633" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.824" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103228" e_stop="103124" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="103123" i_stop="102320" i_length="804"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102319" e_stop="102240" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.857">
            <gDNA_intron_boundary i_start="102239" i_stop="101927" i_length="313"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101926" e_stop="101823" e_length="104"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.858">
            <gDNA_intron_boundary i_start="101822" i_stop="101615" i_length="208"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="101614" e_stop="101547" e_length="68"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.334">
            <gDNA_intron_boundary i_start="101546" i_stop="101406" i_length="141"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="101405" e_stop="101348" e_length="58"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="101347" i_stop="101223" i_length="125"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="101222" e_stop="101109" e_length="114"/>
          </exon>
          <intron i_serial="6" don_prob="0.957" acc_prob="0.997">
            <gDNA_intron_boundary i_start="101108" i_stop="100754" i_length="355"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="100753" e_stop="100670" e_length="84"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.933">
            <gDNA_intron_boundary i_start="100669" i_stop="100330" i_length="340"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="100329" e_stop="100225" e_length="105"/>
          </exon>
          <intron i_serial="8" don_prob="0.983" acc_prob="0.633">
            <gDNA_intron_boundary i_start="100224" i_stop="99958" i_length="267"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="99957" e_stop="99844" e_length="114"/>
          </exon>
          <intron i_serial="9" don_prob="0.937" acc_prob="0.979">
            <gDNA_intron_boundary i_start="99843" i_stop="99504" i_length="340"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="99503" e_stop="99372" e_length="132"/>
          </exon>
          <intron i_serial="10" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="99371" i_stop="99276" i_length="96"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="99275" e_stop="99186" e_length="90"/>
          </exon>
          <intron i_serial="11" don_prob="0.824" acc_prob="0.994">
            <gDNA_intron_boundary i_start="99185" i_stop="99030" i_length="156"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="99029" e_stop="98940" e_length="90"/>
          </exon>
          <intron i_serial="12" don_prob="0.957" acc_prob="0.996">
            <gDNA_intron_boundary i_start="98939" i_stop="98602" i_length="338"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="98601" e_stop="98392" e_length="210"/>
          </exon>
          <intron i_serial="13" don_prob="0.958" acc_prob="0.993">
            <gDNA_intron_boundary i_start="98391" i_stop="98311" i_length="81"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="98310" e_stop="98200" e_length="111"/>
          </exon>
          <intron i_serial="14" don_prob="0.993" acc_prob="0.968">
            <gDNA_intron_boundary i_start="98199" i_stop="97313" i_length="887"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="97312" e_stop="97233" e_length="80"/>
          </exon>
          <intron i_serial="15" don_prob="0.993" acc_prob="0.986">
            <gDNA_intron_boundary i_start="97232" i_stop="97146" i_length="87"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="97145" e_stop="96786" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103228" stop="103124"/>
              <exon start="102319" stop="102240"/>
              <exon start="101926" stop="101823"/>
              <exon start="101614" stop="101547"/>
              <exon start="101405" stop="101348"/>
              <exon start="101222" stop="101109"/>
              <exon start="100753" stop="100670"/>
              <exon start="100329" stop="100225"/>
              <exon start="99957" stop="99917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103228" stop="103124"/>
              <exon start="102319" stop="102240"/>
              <exon start="101926" stop="101823"/>
              <exon start="101614" stop="101547"/>
              <exon start="101405" stop="101348"/>
              <exon start="101222" stop="101109"/>
              <exon start="100753" stop="100706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103227" stop="103124"/>
              <exon start="102319" stop="102240"/>
              <exon start="101926" stop="101823"/>
              <exon start="101614" stop="101547"/>
              <exon start="101405" stop="101348"/>
              <exon start="101222" stop="101109"/>
              <exon start="100753" stop="100707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103223" stop="103124"/>
              <exon start="102319" stop="102240"/>
              <exon start="101926" stop="101850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103219" stop="103124"/>
              <exon start="102319" stop="102240"/>
              <exon start="101926" stop="101823"/>
              <exon start="101614" stop="101547"/>
              <exon start="101405" stop="101374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103205" stop="103124"/>
              <exon start="102319" stop="102240"/>
              <exon start="101926" stop="101823"/>
              <exon start="101614" stop="101547"/>
              <exon start="101405" stop="101348"/>
              <exon start="101222" stop="101205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102297" stop="102240"/>
              <exon start="101926" stop="101823"/>
              <exon start="101614" stop="101547"/>
              <exon start="101405" stop="101348"/>
              <exon start="101222" stop="101109"/>
              <exon start="100753" stop="100670"/>
              <exon start="100329" stop="100225"/>
              <exon start="99957" stop="99844"/>
              <exon start="99503" stop="99386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101354" stop="101348"/>
              <exon start="101222" stop="101109"/>
              <exon start="100753" stop="100670"/>
              <exon start="100329" stop="100225"/>
              <exon start="99957" stop="99844"/>
              <exon start="99503" stop="99372"/>
              <exon start="99275" stop="99186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101214" stop="101109"/>
              <exon start="100753" stop="100670"/>
              <exon start="100329" stop="100225"/>
              <exon start="99957" stop="99844"/>
              <exon start="99503" stop="99427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101159" stop="101109"/>
              <exon start="100753" stop="100670"/>
              <exon start="100329" stop="100225"/>
              <exon start="99957" stop="99844"/>
              <exon start="99503" stop="99372"/>
              <exon start="99275" stop="99186"/>
              <exon start="99029" stop="98940"/>
              <exon start="98601" stop="98575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101159" stop="101109"/>
              <exon start="100753" stop="100670"/>
              <exon start="100329" stop="100225"/>
              <exon start="99957" stop="99844"/>
              <exon start="99503" stop="99372"/>
              <exon start="99275" stop="99186"/>
              <exon start="99029" stop="99022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100738" stop="100670"/>
              <exon start="100329" stop="100225"/>
              <exon start="99957" stop="99844"/>
              <exon start="99503" stop="99372"/>
              <exon start="99275" stop="99257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100313" stop="100225"/>
              <exon start="99957" stop="99844"/>
              <exon start="99503" stop="99372"/>
              <exon start="99275" stop="99186"/>
              <exon start="99029" stop="99009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100287" stop="100225"/>
              <exon start="99957" stop="99844"/>
              <exon start="99503" stop="99372"/>
              <exon start="99275" stop="99186"/>
              <exon start="99029" stop="98940"/>
              <exon start="98601" stop="98562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100236" stop="100225"/>
              <exon start="99957" stop="99844"/>
              <exon start="99503" stop="99372"/>
              <exon start="99275" stop="99186"/>
              <exon start="99029" stop="98940"/>
              <exon start="98601" stop="98392"/>
              <exon start="98310" stop="98200"/>
              <exon start="97312" stop="97233"/>
              <exon start="97145" stop="97124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99503" stop="99372"/>
              <exon start="99275" stop="99186"/>
              <exon start="99029" stop="98940"/>
              <exon start="98601" stop="98392"/>
              <exon start="98310" stop="98239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99425" stop="99372"/>
              <exon start="99275" stop="99186"/>
              <exon start="99029" stop="98940"/>
              <exon start="98601" stop="98392"/>
              <exon start="98310" stop="98200"/>
              <exon start="97312" stop="97286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99425" stop="99372"/>
              <exon start="99275" stop="99186"/>
              <exon start="99029" stop="98940"/>
              <exon start="98601" stop="98392"/>
              <exon start="98310" stop="98254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99418" stop="99372"/>
              <exon start="99275" stop="99186"/>
              <exon start="99029" stop="98940"/>
              <exon start="98601" stop="98392"/>
              <exon start="98310" stop="98200"/>
              <exon start="97312" stop="97233"/>
              <exon start="97145" stop="97124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99255" stop="99186"/>
              <exon start="99029" stop="98940"/>
              <exon start="98601" stop="98392"/>
              <exon start="98310" stop="98200"/>
              <exon start="97312" stop="97266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99197" stop="99186"/>
              <exon start="99029" stop="98940"/>
              <exon start="98601" stop="98392"/>
              <exon start="98310" stop="98200"/>
              <exon start="97312" stop="97233"/>
              <exon start="97145" stop="97133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99197" stop="99186"/>
              <exon start="99029" stop="98940"/>
              <exon start="98601" stop="98392"/>
              <exon start="98310" stop="98200"/>
              <exon start="97312" stop="97253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99196" stop="99186"/>
              <exon start="99029" stop="98940"/>
              <exon start="98601" stop="98392"/>
              <exon start="98310" stop="98200"/>
              <exon start="97312" stop="97233"/>
              <exon start="97145" stop="97052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99196" stop="99186"/>
              <exon start="99029" stop="98940"/>
              <exon start="98601" stop="98392"/>
              <exon start="98310" stop="98200"/>
              <exon start="97312" stop="97234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99196" stop="99186"/>
              <exon start="99029" stop="98940"/>
              <exon start="98601" stop="98444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99021" stop="98940"/>
              <exon start="98601" stop="98392"/>
              <exon start="98310" stop="98200"/>
              <exon start="97312" stop="97233"/>
              <exon start="97145" stop="97009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99019" stop="98940"/>
              <exon start="98601" stop="98392"/>
              <exon start="98310" stop="98200"/>
              <exon start="97312" stop="97233"/>
              <exon start="97145" stop="97010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99000" stop="98940"/>
              <exon start="98601" stop="98392"/>
              <exon start="98310" stop="98200"/>
              <exon start="97312" stop="97233"/>
              <exon start="97145" stop="97029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99000" stop="98940"/>
              <exon start="98601" stop="98392"/>
              <exon start="98310" stop="98200"/>
              <exon start="97312" stop="97233"/>
              <exon start="97145" stop="97052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98569" stop="98392"/>
              <exon start="98310" stop="98200"/>
              <exon start="97312" stop="97233"/>
              <exon start="97145" stop="97044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98568" stop="98392"/>
              <exon start="98310" stop="98200"/>
              <exon start="97312" stop="97233"/>
              <exon start="97145" stop="97010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98564" stop="98392"/>
              <exon start="98310" stop="98200"/>
              <exon start="97312" stop="97233"/>
              <exon start="97145" stop="96796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98526" stop="98392"/>
              <exon start="98310" stop="98200"/>
              <exon start="97312" stop="97265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280788" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98526" stop="98392"/>
              <exon start="98310" stop="98200"/>
              <exon start="97312" stop="97269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280865" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98257" stop="98200"/>
              <exon start="97312" stop="97233"/>
              <exon start="97145" stop="96786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267182" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97052" stop="96793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96984" stop="96831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232535" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGTTTGGAAGAGAATGATGTATCGACTTTCCGCATACAGGCAATTGCAGAAGAGAGCTTCTTCTAGTCATCTCAATTGGATCACTTTATTCGATTCTAGAAG : ATCAAACCACACTTTGTCTTTTGCTACTGTAAAAGCTGAAGAAGTATCAGGCTCTCAACCTGCTGAAGTTCACAACTTGG : TGCAGGGCAAGTGGACAAAATCTTCTAGTTGGAATACAATATTGGATCCCTTGAATGGGCAGCCGTTCATTAAAGTTGCAGAAGTAAATGAATCAGAACTGCAG : CCGTTTGTGGAGAGCTTGTCCAAGTGCCCGAAACATGGTCTACATAATCCATTCAAAGCACCAGAAAG : GTACTTAATGTTAGGAGACGTATCTACAAAAGCAGCTCATGCGCTTGGCTTGCCTGAG : GTTTCTGATTTCTTTGCGAAGCTAATACAAAGGGTGTCTCCTAAGAGTTACCAACAAGCTCTTGTTGAAGTTCTCGTGACGCAGAAATTTCTGGAAAATTTCTGTGGTGATCAG : GTTCGCTTTCTAGCTAGATCTTTTGCAGTACCAGGAAATCATCTGGGGCAGCAGAGCCATGGTTTCCGATGGCCTTATGGACCT : GTAGCGGTTATTGCTCCCTTTAATTTTCCTTTGGAGATTCCTTTGCTTCAGCTGATGGGAGCGTTGTATATGGGAAATAAGCCAGTACTTAAAGTTGATAGCAAG : GTATGCATTGTTATGGAACAAATGCTTCGACTACTTCATGAGTGTGGGTTACCTGTGGATGATGTGGATTTCATAAACTCAGATGGAAAGACAATGAACAAGCTACTCGTGGAG : GCAAAACCACGCATGACTCTCTTCACAGGTAGCTCAAGGGTGGCAGAGAAGTTAGCTGATGACCTAAGCGGTCGAGTCAAACTAGAAGATGCTGGATTCGACTGGAAGATCCTTGGGCCCGATGTCAATGAG : GTGGATTACGTTGCATGGGTTTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCAGCTGAATCAATATTGTTCATGCATGAG : AATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACG : GTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAG : GTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAA : AAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACAGGGGCTCCCCAGAATCACTG : GTTTGGTCCTGCCGGGGACCCCAGAGGAGCCGGAATAGGTACTCCAGAAGCTATTAAACTTGTATGGTCTTGCCACAGAGAAATCATCTATGATGTTGGTCCCATGCCACTAGGATGGAAAGTTCCTGCATCTACTTGAGGAACCAACTGCTACCACTCAAAGCACTCGAGGATCGCGTTCAAAGAGCCTAACGTTAGAATTCCTTGGAGAGAATCCAGTTGTGGATAATGGAAGAATTAGTTTGGTTAACACAAAATCAAGTGGAATGCTATTTGAGTGCATATGTTTGTGCAGACATATGAGCAGCCAGCTTATACTACATATCTAATAAATAAGCTAGTTATTTCGGATAATTTGCT</gDNA_template>
            <first_frame> K  S  L  E  E  N  D  V  S  T  F  R  I  Q  A  I  A  E  E  S  F  F  *  S  S  Q  L  D  H  F  I  R  F  *  K  :  I  K  P  H  F  V  F  C  Y  C  K  S  *  R  S  I  R  L  S  T  C  *  S  S  Q  L  G :   A  G  Q  V  D  K  I  F  *  L  E  Y  N  I  G  S  L  E  W  A  A  V  H  *  S  C  R  S  K  *  I  R  T  A   : A  V  C  G  E  L  V  Q  V  P  E  T  W  S  T  *  S  I  Q  S  T  R  K  :  V  L  N  V  R  R  R  I  Y  K  S  S  S  C  A  W  L  A  *   : G  F  *  F  L  C  E  A  N  T  K  G  V  S  *  E  L  P  T  S  S  C  *  S  S  R  D  A  E  I  S  G  K  F  L  W  *  S   : G  S  L  S  S  *  I  F  C  S  T  R  K  S  S  G  A  A  E  P  W  F  P  M  A  L  W  T   : C  S  G  Y  C  S  L  *  F  S  F  G  D  S  F  A  S  A  D  G  S  V  V  Y  G  K  *  A  S  T  *  S  *  *  Q   : G  M  H  C  Y  G  T  N  A  S  T  T  S  *  V  W  V  T  C  G  *  C  G  F  H  K  L  R  W  K  D  N  E  Q  A  T  R  G   : G  K  T  T  H  D  S  L  H  R  *  L  K  G  G  R  E  V  S  *  *  P  K  R  S  S  Q  T  R  R  C  W  I  R  L  E  D  P  W  A  R  C  Q  *   : G  G  L  R  C  M  G  L  *  P  R  C  I  C  M  *  W  S  E  V  F  S  *  I  N  I  V  H  A  *   : E  L  E  *  K  F  S  L  R  Q  N  D  R  A  C  C  K  K  K  V  R  *  F  N  Y  W  S  C  P  Y   : G  Y  N  *  N  N  A  G  P  C  E  E  I  T  S  D  T  W  I  E  I  A  L  W  W  *  S  L  T  E  P  F  D  P  K  N  L  W  S  H  *  A  H  C  Y  F  C  T  S  *  R  N  T  Q  R  *  T  L  S  S  R  D  Q  R  D  F  W  A  I  P   : G  C  D  *  V  Q  R  *  S  A  S  T  G  P  R  C  P  *  K  D  A  C  T  F  N  S  C  C  G  F  Q  *  Y  I  V  P  A   : K  S  D  W  K  F  S  *  W  N  H  L  C  W  I  E  S  K  N  N  R  G  S  P  E  S  L  :  V  W  S  C  R  G  P  Q  R  S  R  N  R  Y  S  R  S  Y  *  T  C  M  V  L  P  Q  R  N  H  L  *  C  W  S  H  A  T  R  M  E  S  S  C  I  Y  L  R  N  Q  L  L  P  L  K  A  L  E  D  R  V  Q  R  A  *  R  *  N  S  L  E  R  I  Q  L  W  I  M  E  E  L  V  W  L  T  Q  N  Q  V  E  C  Y  L  S  A  Y  V  C  A  D  I  *  A  A  S  L  Y  Y  I  S  N  K  *  A  S  Y  F  G  *  F  A </first_frame>
            <second_frame>  K  V  W  K  R  M  M  Y  R  L  S  A  Y  R  Q  L  Q  K  R  A  S  S  S  H  L  N  W  I  T  L  F  D  S  R  R :   S  N  H  T  L  S  F  A  T  V  K  A  E  E  V  S  G  S  Q  P  A  E  V  H  N  L   : V  Q  G  K  W  T  K  S  S  S  W  N  T  I  L  D  P  L  N  G  Q  P  F  I  K  V  A  E  V  N  E  S  E  L  Q  :  P  F  V  E  S  L  S  K  C  P  K  H  G  L  H  N  P  F  K  A  P  E  R :   Y  L  M  L  G  D  V  S  T  K  A  A  H  A  L  G  L  P  E  :  V  S  D  F  F  A  K  L  I  Q  R  V  S  P  K  S  Y  Q  Q  A  L  V  E  V  L  V  T  Q  K  F  L  E  N  F  C  G  D  Q  :  V  R  F  L  A  R  S  F  A  V  P  G  N  H  L  G  Q  Q  S  H  G  F  R  W  P  Y  G  P  :  V  A  V  I  A  P  F  N  F  P  L  E  I  P  L  L  Q  L  M  G  A  L  Y  M  G  N  K  P  V  L  K  V  D  S  K  :  V  C  I  V  M  E  Q  M  L  R  L  L  H  E  C  G  L  P  V  D  D  V  D  F  I  N  S  D  G  K  T  M  N  K  L  L  V  E  :  A  K  P  R  M  T  L  F  T  G  S  S  R  V  A  E  K  L  A  D  D  L  S  G  R  V  K  L  E  D  A  G  F  D  W  K  I  L  G  P  D  V  N  E  :  V  D  Y  V  A  W  V  C  D  Q  D  A  Y  A  C  S  G  Q  K  C  S  A  E  S  I  L  F  M  H  E  :  N  W  S  K  S  S  L  L  D  K  M  T  E  L  A  A  R  R  K  L  D  D  L  T  I  G  P  V  L  T  :  V  T  T  E  T  M  L  D  H  A  K  K  L  L  Q  I  P  G  S  R  L  L  F  G  G  E  A  L  Q  N  H  S  I  P  K  I  Y  G  A  I  K  P  T  A  I  F  V  P  L  E  E  I  L  K  D  E  H  Y  P  L  V  T  K  E  I  F  G  P  F  Q  :  V  V  T  E  Y  K  D  N  Q  L  P  L  V  L  D  A  L  E  K  M  H  A  H  L  T  A  A  V  V  S  N  D  I  L  F  L  Q  :  K  V  I  G  N  S  V  N  G  T  T  Y  A  G  L  R  A  R  T  T  G  A  P  Q  N  H  W :   F  G  P  A  G  D  P  R  G  A  G  I  G  T  P  E  A  I  K  L  V  W  S  C  H  R  E  I  I  Y  D  V  G  P  M  P  L  G  W  K  V  P  A  S  T  *  G  T  N  C  Y  H  S  K  H  S  R  I  A  F  K  E  P  N  V  R  I  P  W  R  E  S  S  C  G  *  W  K  N  *  F  G  *  H  K  I  K  W  N  A  I  *  V  H  M  F  V  Q  T  Y  E  Q  P  A  Y  T  T  Y  L  I  N  K  L  V  I  S  D  N  L   </second_frame>
            <third_frame>   K  F  G  R  E  *  C  I  D  F  P  H  T  G  N  C  R  R  E  L  L  L  V  I  S  I  G  S  L  Y  S  I  L  E   : D  Q  T  T  L  C  L  L  L  L  *  K  L  K  K  Y  Q  A  L  N  L  L  K  F  T  T  W  :  C  R  A  S  G  Q  N  L  L  V  G  I  Q  Y  W  I  P  *  M  G  S  R  S  L  K  L  Q  K  *  M  N  Q  N  C  S :   R  L  W  R  A  C  P  S  A  R  N  M  V  Y  I  I  H  S  K  H  Q  K   : G  T  *  C  *  E  T  Y  L  Q  K  Q  L  M  R  L  A  C  L  R :   F  L  I  S  L  R  S  *  Y  K  G  C  L  L  R  V  T  N  K  L  L  L  K  F  S  *  R  R  N  F  W  K  I  S  V  V  I  R :   F  A  F  *  L  D  L  L  Q  Y  Q  E  I  I  W  G  S  R  A  M  V  S  D  G  L  M  D  L :   *  R  L  L  L  P  L  I  F  L  W  R  F  L  C  F  S  *  W  E  R  C  I  W  E  I  S  Q  Y  L  K  L  I  A  R :   Y  A  L  L  W  N  K  C  F  D  Y  F  M  S  V  G  Y  L  W  M  M  W  I  S  *  T  Q  M  E  R  Q  *  T  S  Y  S  W  R :   Q  N  H  A  *  L  S  S  Q  V  A  Q  G  W  Q  R  S  *  L  M  T  *  A  V  E  S  N  *  K  M  L  D  S  T  G  R  S  L  G  P  M  S  M  R :   W  I  T  L  H  G  F  V  T  K  M  H  M  H  V  V  V  R  S  V  Q  L  N  Q  Y  C  S  C  M  R :   I  G  V  K  V  L  S  *  T  K  *  P  S  L  L  Q  E  E  S  *  M  I  *  L  L  V  L  S  L  R :   L  Q  L  K  Q  C  W  T  M  R  R  N  Y  F  R  Y  L  D  R  D  C  S  L  V  V  K  P  Y  R  T  I  R  S  Q  K  F  M  E  P  L  S  P  L  L  F  L  Y  L  L  K  K  Y  S  K  M  N  I  I  L  S  *  P  K  R  F  L  G  H  S  R :   L  *  L  S  T  K  I  I  S  F  H  W  S  S  M  P  L  K  R  C  M  H  I  *  Q  L  L  W  F  P  M  I  Y  C  S  C  K :   K  *  L  E  I  Q  L  M  E  P  L  M  L  D  *  E  Q  E  Q  Q  G  L  P  R  I  T   : G  L  V  L  P  G  T  P  E  E  P  E  *  V  L  Q  K  L  L  N  L  Y  G  L  A  T  E  K  S  S  M  M  L  V  P  C  H  *  D  G  K  F  L  H  L  L  E  E  P  T  A  T  T  Q  S  T  R  G  S  R  S  K  S  L  T  L  E  F  L  G  E  N  P  V  V  D  N  G  R  I  S  L  V  N  T  K  S  S  G  M  L  F  E  C  I  C  L  C  R  H  M  S  S  Q  L  I  L  H  I  *  *  I  S  *  L  F  R  I  I  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0128E05.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103227" stop="103124"/>
                    <exon start="102319" stop="102240"/>
                    <exon start="101926" stop="101823"/>
                    <exon start="101614" stop="101547"/>
                    <exon start="101405" stop="101348"/>
                    <exon start="101222" stop="101109"/>
                    <exon start="100753" stop="100670"/>
                    <exon start="100329" stop="100225"/>
                    <exon start="99957" stop="99844"/>
                    <exon start="99503" stop="99372"/>
                    <exon start="99275" stop="99186"/>
                    <exon start="99029" stop="98940"/>
                    <exon start="98601" stop="98392"/>
                    <exon start="98310" stop="98200"/>
                    <exon start="97312" stop="97233"/>
                    <exon start="97145" stop="97007"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1680</number_coding_nucleotides>
                  <number_encoded_amino_acids>560</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVWKRMMYRLSAYRQLQKRASSSHLNWITLFDSRRSNHTLSFATVKAEEVSGSQPAEVHNLVQGKWTKSSSWNTILDPLNGQPFIKVAEVNESELQPFVESLSKCPKHGLHNPFKAPERYLMLGDVSTKAAHALGLPEVSDFFAKLIQRVSPKSYQQALVEVLVTQKFLENFCGDQVRFLARSFAVPGNHLGQQSHGFRWPYGPVAVIAPFNFPLEIPLLQLMGALYMGNKPVLKVDSKVCIVMEQMLRLLHECGLPVDDVDFINSDGKTMNKLLVEAKPRMTLFTGSSRVAEKLADDLSGRVKLEDAGFDWKILGPDVNEVDYVAWVCDQDAYACSGQKCSAESILFMHENWSKSSLLDKMTELAARRKLDDLTIGPVLTVTTETMLDHAKKLLQIPGSRLLFGGEALQNHSIPKIYGAIKPTAIFVPLEEILKDEHYPLVTKEIFGPFQVVTEYKDNQLPLVLDALEKMHAHLTAAVVSNDILFLQKVIGNSVNGTTYAGLRARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDVGPMPLGWKVPAST*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0128E05.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97032" stop="96817"/>
                  </exon_boundaries>
                  <frame>2</frame>
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          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTTTGTTACAATAATGTAATGGTGTTTTGAAGGAATCACTTTTAATAGGTTAAAATTGTTCTTTAGAAGCGTTTACAATTTGATTATTGTAATCTTTGATAAATTTTGTGCATAGGGTAGGATGTATAAAGAACTTTACCTTATCTTTGTGGTGACAGAGATGTTGTTTTCGATAAAATCTAAGCTTTAGTTTTTTAAAAACTACCATTTTGGAAATTATTAGTTTAAATTCTGTTCATTCCAGTCCATCCGTTGGTAGTTTTTACGAAGGTTCATTATATCGTCCTTTATCTGGGCTTGAGACTACCAATGTGTTGTGTGACTATCTTTTTTTCTTTTCTAAACCAATTGTTTTAACAGAACCTGAAGTCCCTTCCATCTTTTTTAGTTAGTGCTACTATTTTTTCGCTATTAAGATTTTATTCCCTAAGGATTCAAAACGAAAAATGTCGTCTTTTTTATGTTATGGATGGATGATTTCTTGTATTTGATTCTTCCTTATTGGGCGTCTACATTATCATGATATGGACTTCTTGTTATCAGTGTAAATGCTGCTTAACTAGTATTTCTTTTTCTACTGAATTACGGTTCTGGGTAGTCTCAACCTTCTGTTTTGAGATAATCAATTGACGTGTATGGACCAAGCGGACGGTGTTGTTTTAGAGTCATTCAGACATTGTGATTTAATCTTTCATAATGCAGATCAAACCACACTTTGTCTTTTGCTACTGTAAAAGCTGAAGAAGTATCAGGCTCTCAACCTGCTGAAGTTCACAACTTGG : TGCAGGGCAAGTGGACAAAATCTTCTAGTTGGAATACAATATTGGATCCCTTGAATGGGCAGCCGTTCATTAAAGTTGCAGAAGTAAATGAATCAGAACTGCAG : CCGTTTGTGGAGAGCTTGTCCAAGTGCCCGAAACATGGTCTACATAATCCATTCAAAGCACCAGAAAG : GTACTTAATGTTAGGAGACGTATCTACAAAAGCAGCTCATGCGCTTGGCTTGCCTGAG : GTTTCTGATTTCTTTGCGAAGCTAATACAAAGGGTGTCTCCTAAGAGTTACCAACAAGCTCTTGTTGAAGTTCTCGTGACGCAGAAATTTCTGGAAAATTTCTGTGGTGATCAG : GTTCGCTTTCTAGCTAGATCTTTTGCAGTACCAGGAAATCATCTGGGGCAGCAGAGCCATGGTTTCCGATGGCCTTATGGACCT : GTAGCGGTTATTGCTCCCTTTAATTTTCCTTTGGAGATTCCTTTGCTTCAGCTGATGGGAGCGTTGTATATGGGAAATAAGCCAGTACTTAAAGTTGATAGCAAG : GTATGCATTGTTATGGAACAAATGCTTCGACTACTTCATGAGTGTGGGTTACCTGTGGATGATGTGGATTTCATAAACTCAGATGGAAAGACAATGAACAAGCTACTCGTGGAG : GCAAAACCACGCATGACTCTCTTCACAGGTAGCTCAAGGGTGGCAGAGAAGTTAGCTGATGACCTAAGCGGTCGAGTCAAACTAGAAGATGCTGGATTCGACTGGAAGATCCTTGGGCCCGATGTCAATGAG : GTGGATTACGTTGCATGGGTTTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCAGCTGAATCAATATTGTTCATGCATGAG : AATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACG : GTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAG : GTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAA : AAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACAGGGGCTCCCCAGAATCACTG : GTTTGGTCCTGCCGGGGACCCCAGAGGAGCCGGAATAGGTACTCCAGAAGCTATTAAACTTGTATGGTCTTGCCACAGAGAAATCATCTATGATGTTGGTCCCATGCCACTAGGATGGAAAGTTCCTGCATCTACTTGAGGAACCAACTGCTACCACTCAAAGCACTCGAGGATCGCGTTCAAAGAGCCTAACGTTAGAATTCCTTGGAGAGAATCCAGTTGTGGATAATGGAAGAATTAGTTTGGTTAACACAAAATCAAGTGGAATGCTATTTGAGTGCATATGTTTGTGCAGACATATGAGCAGCCAGCTTATACTACATATCTAATAAATAAGCTAGTTATTTCGGATAATTTGCT</gDNA_template>
            <first_frame> C  F  V  T  I  M  *  W  C  F  E  G  I  T  F  N  R  L  K  L  F  F  R  S  V  Y  N  L  I  I  V  I  F  D  K  F  C  A  *  G  R  M  Y  K  E  L  Y  L  I  F  V  V  T  E  M  L  F  S  I  K  S  K  L  *  F  F  K  N  Y  H  F  G  N  Y  *  F  K  F  C  S  F  Q  S  I  R  W  *  F  L  R  R  F  I  I  S  S  F  I  W  A  *  D  Y  Q  C  V  V  *  L  S  F  F  L  F  *  T  N  C  F  N  R  T  *  S  P  F  H  L  F  *  L  V  L  L  F  F  R  Y  *  D  F  I  P  *  G  F  K  T  K  N  V  V  F  F  M  L  W  M  D  D  F  L  Y  L  I  L  P  Y  W  A  S  T  L  S  *  Y  G  L  L  V  I  S  V  N  A  A  *  L  V  F  L  F  L  L  N  Y  G  S  G  *  S  Q  P  S  V  L  R  *  S  I  D  V  Y  G  P  S  G  R  C  C  F  R  V  I  Q  T  L  *  F  N  L  S  *  C  R  S  N  H  T  L  S  F  A  T  V  K  A  E  E  V  S  G  S  Q  P  A  E  V  H  N  L   : V  Q  G  K  W  T  K  S  S  S  W  N  T  I  L  D  P  L  N  G  Q  P  F  I  K  V  A  E  V  N  E  S  E  L  Q  :  P  F  V  E  S  L  S  K  C  P  K  H  G  L  H  N  P  F  K  A  P  E  R :   Y  L  M  L  G  D  V  S  T  K  A  A  H  A  L  G  L  P  E  :  V  S  D  F  F  A  K  L  I  Q  R  V  S  P  K  S  Y  Q  Q  A  L  V  E  V  L  V  T  Q  K  F  L  E  N  F  C  G  D  Q  :  V  R  F  L  A  R  S  F  A  V  P  G  N  H  L  G  Q  Q  S  H  G  F  R  W  P  Y  G  P  :  V  A  V  I  A  P  F  N  F  P  L  E  I  P  L  L  Q  L  M  G  A  L  Y  M  G  N  K  P  V  L  K  V  D  S  K  :  V  C  I  V  M  E  Q  M  L  R  L  L  H  E  C  G  L  P  V  D  D  V  D  F  I  N  S  D  G  K  T  M  N  K  L  L  V  E  :  A  K  P  R  M  T  L  F  T  G  S  S  R  V  A  E  K  L  A  D  D  L  S  G  R  V  K  L  E  D  A  G  F  D  W  K  I  L  G  P  D  V  N  E  :  V  D  Y  V  A  W  V  C  D  Q  D  A  Y  A  C  S  G  Q  K  C  S  A  E  S  I  L  F  M  H  E  :  N  W  S  K  S  S  L  L  D  K  M  T  E  L  A  A  R  R  K  L  D  D  L  T  I  G  P  V  L  T  :  V  T  T  E  T  M  L  D  H  A  K  K  L  L  Q  I  P  G  S  R  L  L  F  G  G  E  A  L  Q  N  H  S  I  P  K  I  Y  G  A  I  K  P  T  A  I  F  V  P  L  E  E  I  L  K  D  E  H  Y  P  L  V  T  K  E  I  F  G  P  F  Q  :  V  V  T  E  Y  K  D  N  Q  L  P  L  V  L  D  A  L  E  K  M  H  A  H  L  T  A  A  V  V  S  N  D  I  L  F  L  Q  :  K  V  I  G  N  S  V  N  G  T  T  Y  A  G  L  R  A  R  T  T  G  A  P  Q  N  H  W :   F  G  P  A  G  D  P  R  G  A  G  I  G  T  P  E  A  I  K  L  V  W  S  C  H  R  E  I  I  Y  D  V  G  P  M  P  L  G  W  K  V  P  A  S  T  *  G  T  N  C  Y  H  S  K  H  S  R  I  A  F  K  E  P  N  V  R  I  P  W  R  E  S  S  C  G  *  W  K  N  *  F  G  *  H  K  I  K  W  N  A  I  *  V  H  M  F  V  Q  T  Y  E  Q  P  A  Y  T  T  Y  L  I  N  K  L  V  I  S  D  N  L   </first_frame>
            <second_frame>  V  L  L  Q  *  C  N  G  V  L  K  E  S  L  L  I  G  *  N  C  S  L  E  A  F  T  I  *  L  L  *  S  L  I  N  F  V  H  R  V  G  C  I  K  N  F  T  L  S  L  W  *  Q  R  C  C  F  R  *  N  L  S  F  S  F  L  K  T  T  I  L  E  I  I  S  L  N  S  V  H  S  S  P  S  V  G  S  F  Y  E  G  S  L  Y  R  P  L  S  G  L  E  T  T  N  V  L  C  D  Y  L  F  F  F  S  K  P  I  V  L  T  E  P  E  V  P  S  I  F  F  S  *  C  Y  Y  F  F  A  I  K  I  L  F  P  K  D  S  K  R  K  M  S  S  F  L  C  Y  G  W  M  I  S  C  I  *  F  F  L  I  G  R  L  H  Y  H  D  M  D  F  L  L  S  V  *  M  L  L  N  *  Y  F  F  F  Y  *  I  T  V  L  G  S  L  N  L  L  F  *  D  N  Q  L  T  C  M  D  Q  A  D  G  V  V  L  E  S  F  R  H  C  D  L  I  F  H  N  A  D  Q  T  T  L  C  L  L  L  L  *  K  L  K  K  Y  Q  A  L  N  L  L  K  F  T  T  W  :  C  R  A  S  G  Q  N  L  L  V  G  I  Q  Y  W  I  P  *  M  G  S  R  S  L  K  L  Q  K  *  M  N  Q  N  C  S :   R  L  W  R  A  C  P  S  A  R  N  M  V  Y  I  I  H  S  K  H  Q  K   : G  T  *  C  *  E  T  Y  L  Q  K  Q  L  M  R  L  A  C  L  R :   F  L  I  S  L  R  S  *  Y  K  G  C  L  L  R  V  T  N  K  L  L  L  K  F  S  *  R  R  N  F  W  K  I  S  V  V  I  R :   F  A  F  *  L  D  L  L  Q  Y  Q  E  I  I  W  G  S  R  A  M  V  S  D  G  L  M  D  L :   *  R  L  L  L  P  L  I  F  L  W  R  F  L  C  F  S  *  W  E  R  C  I  W  E  I  S  Q  Y  L  K  L  I  A  R :   Y  A  L  L  W  N  K  C  F  D  Y  F  M  S  V  G  Y  L  W  M  M  W  I  S  *  T  Q  M  E  R  Q  *  T  S  Y  S  W  R :   Q  N  H  A  *  L  S  S  Q  V  A  Q  G  W  Q  R  S  *  L  M  T  *  A  V  E  S  N  *  K  M  L  D  S  T  G  R  S  L  G  P  M  S  M  R :   W  I  T  L  H  G  F  V  T  K  M  H  M  H  V  V  V  R  S  V  Q  L  N  Q  Y  C  S  C  M  R :   I  G  V  K  V  L  S  *  T  K  *  P  S  L  L  Q  E  E  S  *  M  I  *  L  L  V  L  S  L  R :   L  Q  L  K  Q  C  W  T  M  R  R  N  Y  F  R  Y  L  D  R  D  C  S  L  V  V  K  P  Y  R  T  I  R  S  Q  K  F  M  E  P  L  S  P  L  L  F  L  Y  L  L  K  K  Y  S  K  M  N  I  I  L  S  *  P  K  R  F  L  G  H  S  R :   L  *  L  S  T  K  I  I  S  F  H  W  S  S  M  P  L  K  R  C  M  H  I  *  Q  L  L  W  F  P  M  I  Y  C  S  C  K :   K  *  L  E  I  Q  L  M  E  P  L  M  L  D  *  E  Q  E  Q  Q  G  L  P  R  I  T   : G  L  V  L  P  G  T  P  E  E  P  E  *  V  L  Q  K  L  L  N  L  Y  G  L  A  T  E  K  S  S  M  M  L  V  P  C  H  *  D  G  K  F  L  H  L  L  E  E  P  T  A  T  T  Q  S  T  R  G  S  R  S  K  S  L  T  L  E  F  L  G  E  N  P  V  V  D  N  G  R  I  S  L  V  N  T  K  S  S  G  M  L  F  E  C  I  C  L  C  R  H  M  S  S  Q  L  I  L  H  I  *  *  I  S  *  L  F  R  I  I  C  </second_frame>
            <third_frame>   F  C  Y  N  N  V  M  V  F  *  R  N  H  F  *  *  V  K  I  V  L  *  K  R  L  Q  F  D  Y  C  N  L  *  *  I  L  C  I  G  *  D  V  *  R  T  L  P  Y  L  C  G  D  R  D  V  V  F  D  K  I  *  A  L  V  F  *  K  L  P  F  W  K  L  L  V  *  I  L  F  I  P  V  H  P  L  V  V  F  T  K  V  H  Y  I  V  L  Y  L  G  L  R  L  P  M  C  C  V  T  I  F  F  S  F  L  N  Q  L  F  *  Q  N  L  K  S  L  P  S  F  L  V  S  A  T  I  F  S  L  L  R  F  Y  S  L  R  I  Q  N  E  K  C  R  L  F  Y  V  M  D  G  *  F  L  V  F  D  S  S  L  L  G  V  Y  I  I  M  I  W  T  S  C  Y  Q  C  K  C  C  L  T  S  I  S  F  S  T  E  L  R  F  W  V  V  S  T  F  C  F  E  I  I  N  *  R  V  W  T  K  R  T  V  L  F  *  S  H  S  D  I  V  I  *  S  F  I  M  Q  I  K  P  H  F  V  F  C  Y  C  K  S  *  R  S  I  R  L  S  T  C  *  S  S  Q  L  G :   A  G  Q  V  D  K  I  F  *  L  E  Y  N  I  G  S  L  E  W  A  A  V  H  *  S  C  R  S  K  *  I  R  T  A   : A  V  C  G  E  L  V  Q  V  P  E  T  W  S  T  *  S  I  Q  S  T  R  K  :  V  L  N  V  R  R  R  I  Y  K  S  S  S  C  A  W  L  A  *   : G  F  *  F  L  C  E  A  N  T  K  G  V  S  *  E  L  P  T  S  S  C  *  S  S  R  D  A  E  I  S  G  K  F  L  W  *  S   : G  S  L  S  S  *  I  F  C  S  T  R  K  S  S  G  A  A  E  P  W  F  P  M  A  L  W  T   : C  S  G  Y  C  S  L  *  F  S  F  G  D  S  F  A  S  A  D  G  S  V  V  Y  G  K  *  A  S  T  *  S  *  *  Q   : G  M  H  C  Y  G  T  N  A  S  T  T  S  *  V  W  V  T  C  G  *  C  G  F  H  K  L  R  W  K  D  N  E  Q  A  T  R  G   : G  K  T  T  H  D  S  L  H  R  *  L  K  G  G  R  E  V  S  *  *  P  K  R  S  S  Q  T  R  R  C  W  I  R  L  E  D  P  W  A  R  C  Q  *   : G  G  L  R  C  M  G  L  *  P  R  C  I  C  M  *  W  S  E  V  F  S  *  I  N  I  V  H  A  *   : E  L  E  *  K  F  S  L  R  Q  N  D  R  A  C  C  K  K  K  V  R  *  F  N  Y  W  S  C  P  Y   : G  Y  N  *  N  N  A  G  P  C  E  E  I  T  S  D  T  W  I  E  I  A  L  W  W  *  S  L  T  E  P  F  D  P  K  N  L  W  S  H  *  A  H  C  Y  F  C  T  S  *  R  N  T  Q  R  *  T  L  S  S  R  D  Q  R  D  F  W  A  I  P   : G  C  D  *  V  Q  R  *  S  A  S  T  G  P  R  C  P  *  K  D  A  C  T  F  N  S  C  C  G  F  Q  *  Y  I  V  P  A   : K  S  D  W  K  F  S  *  W  N  H  L  C  W  I  E  S  K  N  N  R  G  S  P  E  S  L  :  V  W  S  C  R  G  P  Q  R  S  R  N  R  Y  S  R  S  Y  *  T  C  M  V  L  P  Q  R  N  H  L  *  C  W  S  H  A  T  R  M  E  S  S  C  I  Y  L  R  N  Q  L  L  P  L  K  A  L  E  D  R  V  Q  R  A  *  R  *  N  S  L  E  R  I  Q  L  W  I  M  E  E  L  V  W  L  T  Q  N  Q  V  E  C  Y  L  S  A  Y  V  C  A  D  I  *  A  A  S  L  Y  Y  I  S  N  K  *  A  S  Y  F  G  *  F  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0128E05.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102324" stop="102240"/>
                    <exon start="101926" stop="101823"/>
                    <exon start="101614" stop="101547"/>
                    <exon start="101405" stop="101348"/>
                    <exon start="101222" stop="101109"/>
                    <exon start="100753" stop="100670"/>
                    <exon start="100329" stop="100225"/>
                    <exon start="99957" stop="99844"/>
                    <exon start="99503" stop="99372"/>
                    <exon start="99275" stop="99186"/>
                    <exon start="99029" stop="98940"/>
                    <exon start="98601" stop="98392"/>
                    <exon start="98310" stop="98200"/>
                    <exon start="97312" stop="97233"/>
                    <exon start="97145" stop="97007"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1581</number_coding_nucleotides>
                  <number_encoded_amino_acids>527</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CRSNHTLSFATVKAEEVSGSQPAEVHNLVQGKWTKSSSWNTILDPLNGQPFIKVAEVNESELQPFVESLSKCPKHGLHNPFKAPERYLMLGDVSTKAAHALGLPEVSDFFAKLIQRVSPKSYQQALVEVLVTQKFLENFCGDQVRFLARSFAVPGNHLGQQSHGFRWPYGPVAVIAPFNFPLEIPLLQLMGALYMGNKPVLKVDSKVCIVMEQMLRLLHECGLPVDDVDFINSDGKTMNKLLVEAKPRMTLFTGSSRVAEKLADDLSGRVKLEDAGFDWKILGPDVNEVDYVAWVCDQDAYACSGQKCSAESILFMHENWSKSSLLDKMTELAARRKLDDLTIGPVLTVTTETMLDHAKKLLQIPGSRLLFGGEALQNHSIPKIYGAIKPTAIFVPLEEILKDEHYPLVTKEIFGPFQVVTEYKDNQLPLVLDALEKMHAHLTAAVVSNDILFLQKVIGNSVNGTTYAGLRARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDVGPMPLGWKVPAST*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0128E05.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102845" stop="102630"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLSFSFLKTTILEIISLNSVHSSPSVGSFYEGSLYRPLSGLETTNVLCDYLFFFSKPIVLTEPEVPSIFFS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0128E05.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97032" stop="96817"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGKFLHLLEEPTATTQSTRGSRSKSLTLEFLGENPVVDNGRISLVNTKSSGMLFECICLCRHMSSQLILHI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 387 chains have been computed
$ 
$ memory statistics:
$ 382040 bytes spliced alignments in total
$ 181 spliced alignments have been stored
$ 2110 bytes was the average size of a spliced alignment
$ 26152 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1868 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 402 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 17:33:26
-->
