<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 02:51:20"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204533" ref_strand="-" ref_description="SGN-E204533 [cLEC-24-G13]">
      <seq>aatttttattatgaaaatggtatgaaaagtcattagacttgtgaatgttgtcaacccaataacttgacaagtttataaatcctctatcatgatataagaagataaagtgatggtacactttatctttcaaagtgatgttgaggtgtgtcatggaaatatgatgaattttaaagtcatgacaatgtgcttataatgcaaatttataaagtacatatgaataattagtccaatctttgaagagaatgtgacttgtaatgagtatcgtgaatgctcgaccattctataagagaatgggtccagatgtgataaaatcattatgggttggatatatgtcacaactcacctctatagaaggttttgaaaaaaaaaaaaaaaaaactcggactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="-" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1487" stop="514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1187" g_stop="834" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="361" polyA_stop="379"/>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="-" ref_id="SGN-E204533" ref_strand="-">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204533" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1187" e_stop="834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTCATTATCAAAATGGTATGAAAGGACATTGGACTTGTGAATGTTGTCGACCCAATAATTTGACAAGTTTATAAATCCTCTATCATGATACAAGAAGATAAAGTGATGGTACACTTAATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGTCATGACAATGTGCTTATAATGCAAATTTATGAAAAACAAATAAATAATTAGTCCATTCCTTGAAGAGAATGTGACTTGTGATGAGTATGGTGGATGCTCGACCATTCTATATGAGAATGGGTCCAGATATGATAAAATCATTATGGGTTGGATATATGTTACAACTCACCTCTATGGAAG</genome_strand>
        <mrna_strand>AATTTTTATTATGAAAATGGTATGAAAAGTCATTAGACTTGTGAATGTTGTCAACCCAATAACTTGACAAGTTTATAAATCCTCTATCATGATATAAGAAGATAAAGTGATGGTACACTTTATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGTCATGACAATGTGCTTATAATGCAAATTTATAAAGTACATATGAATAATTAGTCCAATCTTTGAAGAGAATGTGACTTGTAATGAGTATCGTGAATGCTCGACCATTCTATAAGAGAATGGGTCCAGATGTGATAAAATCATTATGGGTTGGATATATGTCACAACTCACCTCTATAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203362" ref_strand="+" ref_description="SGN-E203362 [cLEB-3-P3](-)">
      <seq>gctggagatggtgcagaaagtaggtgcacacttcccgatggcgtcagaaagtgacccttccaaccaatggcaaagaagtttaggaaagtgacttgcccatataaaaggcactttcctaaacacttttcttcagtttttgcaacttgataaaaacttttcaagaactcttgcaaaggctctacaaagtaaaggcagaattattccaagaacaacagcaatatcttgagcttttcgtctagttgtttaggaatatattctcttgttcttaaactgtaaaccattcctgaatctataaaggatttggtgtgttgtgttaaaagtctaggttgtccaggtgggatagcttagtgggtagattgttttctacttaggcttgttaagcaatagaggactattgcttaacggtaagattcataactctttcttacgtttggtgtaatcgtgttttacttttgcttttgaagattagtgaaaacgattgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3610" stop="4698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3910" g_stop="4397" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="501"/>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E203362" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3910" e_stop="4397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGAGATGGTGCAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAGTGTGACCCTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTGAACACTTTTCTCTAGTTTTTGCAACTTGATAAACACTTTTCAAGAACTCTTGCAAAGGCTAATACAAAGCAAAGGCAGAATCATTCCTAGGACAACAGCAATATCTGGAGCTTTTCGTCTAATTGTTTAGGAATTTATTCTCTTGTTCTTAAATTGTAAACCACTCCTAAATCTATAAAGGAATTGGTGTGTTGTGTTCAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTTCTACTTTGGCTTGTTGAGCAATAGAGGTCTATTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTTGCTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAA</genome_strand>
        <mrna_strand>GCTGGAGATGGTGCAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAA--GTGACCCTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACACTTTTCTTCAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCT-CTACAAAGTAAAGGCAGAATTATTCCAAGAACAACAGCAATATCTTGAGCTTTTCGTCTAGTTGTTTAGGAATATATTCTCTTGTTCTTAAACTGTAAACCATTCCTGAATCTATAAAGGATTTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTG-TTTTCTACTTAGGCTTGTTAAGCAATAGAGGACTATTGCTTAACGGTAAGATTCATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTTACTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="-" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27394" stop="25987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27094" g_stop="26287" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="-" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27094" e_stop="26287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTACAAAAGGTTTGACAGCTATATGGCGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAAGGATGATTCGTTCATCTATCTGGTGCTTTATGTAGATGATATGCTGATAGCTGCAAAGAAGAAGTATGACATTCATAAGCTGAAGGGTTTACTTAGTGCGGAGTTTGAGATGAAGGATCTGGGAGCTGCTCGGAAGATTCTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCTATTGATAACCCTAGTGCTGCCAATATCCACCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGTCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGTAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="-" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28053" stop="26805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27753" g_stop="27105" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="-" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27753" e_stop="27105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTGTGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATGCATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATATAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTACACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="-" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28052" stop="27068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27752" g_stop="27368" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="-" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27752" e_stop="27368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTGTGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATGCATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288383" ref_strand="+" ref_description="SGN-E288383 [cLES-16-O1]">
      <seq>tcaacttgtgggggaataattttgacatcgattcaacattgagcttccttgaatcattgacaaactgtaggaatctaagagtactcacgcttggtggtaatccgttggatggtgttttgcctgcatctgttgggaatttctcaaactgcttgcaaatatgtgaagcatctaaatgtaaactgaatggtgtcatttcaaaacaaattactaatcttactggattgacaaggatgagtctgtcgaacaatcagttgataggccatattccaacaacagtgcaaggaatgctgaaccttcaagaactttacctatgaagcaacaagttagaaggagccataccagatgttatctgcagttgacagtatcttggtgcattagaattgtcagagaatcaattttctagtttcgttccaccatgcttagggaatgttactagtttgaggacactctatctagataacaacaagctggattctagattacctgcaagattggggggacttcaaaacatcatagagttcaatatttcatccaattatttgagtggagaaattccgctagagagcggaaacttgaatggtgcaacactgattgatctgtcaaataattatttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41373" stop="42589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41673" g_stop="42289" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E288383" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41673" e_stop="42289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTTGTGGGGGAATAATTTTGTCAGCGATTCAACATTGAGCTTCCTTGAATCATTGACAAACTGTAGGAATCTAAGAGTACTCACGCTTGGTGGTAATCCGTTGGATGGTGTTTTGCCTGCATCTGTTGGTAATTTCTCAAACTCCTTGCAAATTTTTGAAGCATCTAAATGTAAACTGAAGGGTGTCATTTCAAAACAAATTACTAATCTTACTGGATTGACAAGGATGAGTCTGTCGAACAATCAGTTGATAGGTCATATTCCAAAAACAGTGCAAGGAATGCTGAACCTTCAAGAACTTTACCTAGGAAGCAACAAGTTAGAAGGAGCCATACCAGATGTTATCTGCAGTTTACAGTATCTTGGTGCATTAGAATTGTCAGAAAATCAATTTTCTAGTTCCGTTCCACCATGCTTAGGGAATGTTACTAGTTTGAGGACACTCTATCTAGATAACAACAAGCTGGATTCTAGATTACCTGCAAGATTGGGGGGACTTCAAAACATCATAGAGTTCAATATTTCATCCAATTATTTGAGTGGAGAAATTCCGCTAGAGAGCGGAAACTTGAAGGGTGCAACACTGATTGATCTGTCAAATAATTATTTTTCT</genome_strand>
        <mrna_strand>TCAACTTGTGGGGGAATAATTTTGACATCGATTCAACATTGAGCTTCCTTGAATCATTGACAAACTGTAGGAATCTAAGAGTACTCACGCTTGGTGGTAATCCGTTGGATGGTGTTTTGCCTGCATCTGTTGGGAATTTCTCAAACTGCTTGCAAATATGTGAAGCATCTAAATGTAAACTGAATGGTGTCATTTCAAAACAAATTACTAATCTTACTGGATTGACAAGGATGAGTCTGTCGAACAATCAGTTGATAGGCCATATTCCAACAACAGTGCAAGGAATGCTGAACCTTCAAGAACTTTACCTATGAAGCAACAAGTTAGAAGGAGCCATACCAGATGTTATCTGCAGTTGACAGTATCTTGGTGCATTAGAATTGTCAGAGAATCAATTTTCTAGTTTCGTTCCACCATGCTTAGGGAATGTTACTAGTTTGAGGACACTCTATCTAGATAACAACAAGCTGGATTCTAGATTACCTGCAAGATTGGGGGGACTTCAAAACATCATAGAGTTCAATATTTCATCCAATTATTTGAGTGGAGAAATTCCGCTAGAGAGCGGAAACTTGAATGGTGCAACACTGATTGATCTGTCAAATAATTATTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243215" ref_strand="+" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="-" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49386" stop="48327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49086" g_stop="48628" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="-" ref_id="SGN-E243215" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49086" e_stop="48628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACACAGTAAAAAAATAGTTTAA-TTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAATGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACATTGAACTTTGATAGAAGAATCATATATATCTCTAAATAATTTTTTTTAAAAAAAATTAAAAGTAATAAATATAAATTTAAAATAAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGTCATTTTATAACAGCAGGGGTAAATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGCCACTTTTATAACGAGGGGTATATGAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCTTTTTCCCTTTTATATATAACTATAA</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTATTTTTTA-AAATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719407" ref_strand="+" ref_description="SGN-E719407 [FC07DB01]">
      <seq>acctctgcaacatataaccgtcaaattccatttctcctcaaattttttcaaagctcaaatgctgtaaacactcatgaaaaccctagccgtatctcatcaccgaccggttatctccggcaccggtcaccgctcctccattttctccggtcacagggctacttcgctctctttctctaggtcccctgtatcggctgctcgacttcggattctcaaatgctccgctgctatttctcctccttcattagtggacaactcagtgaagttcaaggaggctgccaagcatgggaatttgatccccctctacaggtctatattctccgatcacttaactccggtccttgcttaccgctgtctagtgaaggaaaatgatagggaagctccgagcttcttgttcgaatctgtacagcctggtttgaaagcttctaatgttggtcgatacagtgtgattggggcccagccaacaatggaaattgttgcaaaaaaaaacatggtgacaattatggatcaccttgaaggaagcaaaacagaggaatttgaggaagatccaatgagcattcctcgtaggattatggaaaaatggaaacctcaatgcataaatgagcttcctgaaacattttgtggaggttgggttggtttcttctcatatgatactgtgcgttacgtaaagaaaaaaaaactacctttctcaaatgctccaatggatgataggaaccttcctgatcttcatctaggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65152" stop="69145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65452" g_stop="65696" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65697" i_stop="66981" i_length="1285">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66982" g_stop="67166" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="430" r_length="185" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67167" i_stop="67565" i_length="399">
            <donor d_prob="0.950" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67566" g_stop="67755" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="620" r_length="190" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67756" i_stop="68731" i_length="976">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68732" g_stop="68845" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="734" r_length="114" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E719407" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65452" e_stop="65696"/>
          <exon e_start="66982" e_stop="67166"/>
          <exon e_start="67566" e_stop="67755"/>
          <exon e_start="68732" e_stop="68845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCTGCAACATATAACCGTCAAATTCCATTTCTTTCACCATTTTTTCAAAGCTCAAATGCTGTAAACACTCATGAAAACCCTAGCCGTATCTCATCACCGACCGGTTATCTCCGGCACCGGTCACCGCTCCTCCATTTTCTCCGGTCACAGGGCTACTTCGCTCTCTTTCTCTAGGTCCCCTGTATCGGCTGCTCGACTTCGGATTCTCAAATGCTCCGCTGCTATTTCTCCTCCTTCATTAGGTAATCTTTGTGTTTGTTTAATTCAGTTGTTGGATCCAGAATTTATGACTGTAGTTACTTACCTAGATATTTAATTTGTTGAAATCTCAGTTATTGAATTAGTTTCGCCACCTTCATTTGGTATCCTCTATGTCTATTTAATCTAGAGATAGTTCTAGCATTTTAATTCGGCTAGTTTGGATTCTGCTGCATTGCTTACTCAGCTATATATGCGGCATTAATGTTTTTTTCTCTCAAATAAATAAATAAATCTTAACTGTATATATTTGATTTTGAAATGAATCCAAAAGTTTAAGTCATTGCCTTTTCTGCTTCTCTGGAACTTTAGCATTAATATGTACAAAAACTTTACTTTCAACTGCTGAAAAGTTTGGCTTCCTTCCATTTAATTTAGAGGTGGATTCAAGATTTTTTAGTGCAGAGAGTAGCGGATCCAGGATTTCCATTGAGGGGGGTTTAAAAAGAATGCTAAATAGTGCTGATTGATAAGCATGTTAGATCACATATGAGAGGCTACACTTGATTTCTATTGAATGGTAAAGTAAAAAGTTAGTTGGAACTTAGAAGAATTAAACAAGCAAGGAACCAAGATATATAGCTTAGCTCTTCATTGTACCAGATTTCAATCACTAATTTAATCAAGCAATTAATGATCAGCTTAATGAATAAATAAAAATAAAACATGATTAGCACTGTAACAAAGAAGAAGCCGTTTCATTTATTTAGAGAAAACAATTAACGCTGAAGCTAAAACATTAAAAAATGTTACTAGCCAGATTCGAACCCACACGCCTATTAAGCTCTGAACCCCCATAGCCGCTGAACCAAGCCCCTTACTTTGTTGAGGGGGTTAATGTTAAATATTTTAATAAACTACAGATTTGATCCTATATACACAGTGTGATTTTTATCAGAACCCCTGAACTCCATGTAGATCCGCCCTTGGGGACAGATAAGCGATGTGTTTCTTGATCCTATGTGGCAATCAACTTGAACTTATCATTGACAGCATAGAATATAAAGTTGCCACCCCTCTCCTCTAAATGAGTGCATTTACTTTTGGAATCGACCAAGAAAGGATCTTACCTCAAGATTTGACTGCCCCATTTAGGAGTTGAATTAAAAAAATATGAAGTAATATATATAGACAGAGTCGAGGGCATTTATTGTGTTTGCACTACTGTCAACAGTGCATATCTATTCACTTACTTTATTTGCTGGACATTAATTTCATGATGGTAACTTTTGGCTGCCTTCTGGTTCTGAAATGGATTACTTTGTGTAGTGGACGACTCAGTGAAGTTCAAGGAGGCTGCCAAGCATGGGAATTTGATCCCCCTCTACAGGTCTATATTCTCCGATCACTTAACTCCGGTCCTTGCTTACCGCTGTCTAGTGAAGGAAGATGATAGGGAAGCTCCGAGCTTCTTGTTCGAGTCTGTAGAGCCTGGTTTGAAAGCTTCTAATGTTGTAAGCTCTTTGTTCTACCTCCATTTAGTTCCTTGATTGAAGCTGGAATAGTCAAAGGAAATTATATTGCTCCAACTTTAAATGAATGATGGGTTTGAAATGAAATTAATATATTCAGAAATCATGTATAAGTACTATAACTCACAACTTAATATATTTAAAAATAGTTCAAATTGTTTCAGTTGCCAAATCTTGAAACTTCTTTTGTTCCAAAATAGTGATACTGAAGTCCTCTTCAGGAAGGAGGGAGTGGTGAGATTTACAAAGAGCACATAGGGAGTTATTGATGTTTGTATTCTCATTACCTGCACTACCTGTGTTGGCACAACTCTGAACAATCAAAAAATGTACTTGCTTGATTACACCTTGCTATGTTTGTTGATGAGTTAATTATGCTAGGGTCGATACAGTGTGATTGGGGCCCAGCCAACAATGGAAATTGTTGCAAAAGAGAACATGGTGACAATTATGGATCACCTTGAAGGAAGCAGAACAGAGGAATTTGAGGAAGATCCAATGAGCATTCCTCGTAGGATTATGGAAAAATGGAAACCTCAATGCATAAATGAGCTTCCTGAAGCATTTTGTGGTAATAAATTATACTTCAACTGCTTGAGTTTATTAGCATTTATACTAATGTAGCTTGAGTCAATGAATCATCTGCTGCTTCACTGTGGACAAATCTAGTAAATGCTCCTCGTTATCTTTGTAGTTAGTGTCTCATGCCAGGAGCATTGAACTTGCTTTAAGTAGCTGGAATGGACAATCTCTATAATCTATCCATTTTCGTTTTCTCCAACTTTTTTTTTTTGGATTTGTAAAGTGAGTCTTCTTAAATTAGAGACGCTATTTTTTAAAATATTTGTTTTCAAAGTAGAAAAGAACAATTGTAAGCTGAATGATTTTTTTCTGTGAGATAATAGTATTAATTATAGTTTACTTGTTAAGACGTTATCATAGAAAAGTATTATATCATTATATCAAACAGTAGTACAGTGCGTCCATTCAATTGATGTAAAACTCTTATGTGTACCTTCAGGATAATAAAATCATTACCTTTTCCATTGAAAAAAAGGGAAGGATAAAATCTAAAAAAAATAAAAATAATTATTAGTTACTGTGACAGAGTAATTAAAGAGACATTTAAATGATTTTGATTTCCCACAACATGAAGCAGAAAGAAGTGATGTGAAATGGAATCACATTTTAAGATGGTATACATATAAAATAAAAACTATTAGTAACTCTAATTTATAGTGGGAGAATGGAAGAGGAAGAGAACTGTCTTGTTGATTTACGCTATCAATTTAAGGAGTGTAATAATTGAAAATTATGCTAGTTTCATATATTTGAATAAAGTAAGAATTTAATCTGAAAAATCTAAGATGAAGTAAGAATCCACATCAAAAAGTTGGAAAGAGGGAAGGATGAAGAAATATTATGTGTTGAATAAGACTAGGCCTATAGGTTTCGGAAGGTATATGATAATTGATACCTTTATACACAAATTTCATTCGAGAAGGAGTAACTTAACTCTAAATAATGCTGTAGTTTTTCCTTTGCAGGAGGTTGGGTTGGTTTCTTCTCATATGATACTGTGCGTTACGTAGAGAAAAAGAAGCTACCTTTCTCAAATGCTCCAATGGATGATAGGAACCTTCCTGATCTTCATCTAGGAC</genome_strand>
        <mrna_strand>ACCTCTGCAACATATAACCGTCAAATTCCATTTCTCCTCAAATTTTTTCAAAGCTCAAATGCTGTAAACACTCATGAAAACCCTAGCCGTATCTCATCACCGACCGGTTATCTCCGGCACCGGTCACCGCTCCTCCATTTTCTCCGGTCACAGGGCTACTTCGCTCTCTTTCTCTAGGTCCCCTGTATCGGCTGCTCGACTTCGGATTCTCAAATGCTCCGCTGCTATTTCTCCTCCTTCATTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACAACTCAGTGAAGTTCAAGGAGGCTGCCAAGCATGGGAATTTGATCCCCCTCTACAGGTCTATATTCTCCGATCACTTAACTCCGGTCCTTGCTTACCGCTGTCTAGTGAAGGAAAATGATAGGGAAGCTCCGAGCTTCTTGTTCGAATCTGTACAGCCTGGTTTGAAAGCTTCTAATGTT...............................................................................................................................................................................................................................................................................................................................................................................................................GGTCGATACAGTGTGATTGGGGCCCAGCCAACAATGGAAATTGTTGCAAAAAAAAACATGGTGACAATTATGGATCACCTTGAAGGAAGCAAAACAGAGGAATTTGAGGAAGATCCAATGAGCATTCCTCGTAGGATTATGGAAAAATGGAAACCTCAATGCATAAATGAGCTTCCTGAAACATTTTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTTGGGTTGGTTTCTTCTCATATGATACTGTGCGTTACGTAAAGAAAAAAAAACTACCTTTCTCAAATGCTCCAATGGATGATAGGAACCTTCCTGATCTTCATCTAGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411730" ref_strand="+" ref_description="SGN-E411730 [STM-15-M5]">
      <seq>gccgtatctcaccaccgaccggttatctccggctccggtcaccgctcctccattttctccggtcaccgggccacttcgctctctttttctagttcccctgtagcggctgctcgacttcggattctcaaatgctccgctgccgtttctcctccttcattagtggacgattcagtgaagttcaaggaggctgccaaggatgggaatttgatccccctctacaggtctatattctccgatcacttaactcccgtccttgcttaccgctgtctagtgaaggaagatgatagggaagctccgagcttcttgttcgagtctgtagagcctggtttgaaagcttctaatgttggtcgatacagtgtgattggggcccagccgacaatggaaattgttgcaaaggagaacatggtgacaattatggatcaccttgaaggaagcagaacggaggaatttgaggaagatcccatgagcattcctcgtaggattatggaaaaatggaaacctcaatgcataaatgagcttcctgaagcattttgtggaggttgggttggttttttctcatatgacactgtgcgttacgtagagaaaaagaagctacctttctcaaatgctccaatggatgataggaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65237" stop="69125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65537" g_stop="65696" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65697" i_stop="66981" i_length="1285">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66982" g_stop="67166" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="345" r_length="185" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67167" i_stop="67565" i_length="399">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67566" g_stop="67755" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="535" r_length="190" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67756" i_stop="68731" i_length="976">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68732" g_stop="68825" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="629" r_length="94" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E411730" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E411730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65537" e_stop="65696"/>
          <exon e_start="66982" e_stop="67166"/>
          <exon e_start="67566" e_stop="67755"/>
          <exon e_start="68732" e_stop="68825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTATCTCATCACCGACCGGTTATCTCCGGCACCGGTCACCGCTCCTCCATTTTCTCCGGTCACAGGGCTACTTCGCTCTCTTTCTCTAGGTCCCCTGTATCGGCTGCTCGACTTCGGATTCTCAAATGCTCCGCTGCTATTTCTCCTCCTTCATTAGGTAATCTTTGTGTTTGTTTAATTCAGTTGTTGGATCCAGAATTTATGACTGTAGTTACTTACCTAGATATTTAATTTGTTGAAATCTCAGTTATTGAATTAGTTTCGCCACCTTCATTTGGTATCCTCTATGTCTATTTAATCTAGAGATAGTTCTAGCATTTTAATTCGGCTAGTTTGGATTCTGCTGCATTGCTTACTCAGCTATATATGCGGCATTAATGTTTTTTTCTCTCAAATAAATAAATAAATCTTAACTGTATATATTTGATTTTGAAATGAATCCAAAAGTTTAAGTCATTGCCTTTTCTGCTTCTCTGGAACTTTAGCATTAATATGTACAAAAACTTTACTTTCAACTGCTGAAAAGTTTGGCTTCCTTCCATTTAATTTAGAGGTGGATTCAAGATTTTTTAGTGCAGAGAGTAGCGGATCCAGGATTTCCATTGAGGGGGGTTTAAAAAGAATGCTAAATAGTGCTGATTGATAAGCATGTTAGATCACATATGAGAGGCTACACTTGATTTCTATTGAATGGTAAAGTAAAAAGTTAGTTGGAACTTAGAAGAATTAAACAAGCAAGGAACCAAGATATATAGCTTAGCTCTTCATTGTACCAGATTTCAATCACTAATTTAATCAAGCAATTAATGATCAGCTTAATGAATAAATAAAAATAAAACATGATTAGCACTGTAACAAAGAAGAAGCCGTTTCATTTATTTAGAGAAAACAATTAACGCTGAAGCTAAAACATTAAAAAATGTTACTAGCCAGATTCGAACCCACACGCCTATTAAGCTCTGAACCCCCATAGCCGCTGAACCAAGCCCCTTACTTTGTTGAGGGGGTTAATGTTAAATATTTTAATAAACTACAGATTTGATCCTATATACACAGTGTGATTTTTATCAGAACCCCTGAACTCCATGTAGATCCGCCCTTGGGGACAGATAAGCGATGTGTTTCTTGATCCTATGTGGCAATCAACTTGAACTTATCATTGACAGCATAGAATATAAAGTTGCCACCCCTCTCCTCTAAATGAGTGCATTTACTTTTGGAATCGACCAAGAAAGGATCTTACCTCAAGATTTGACTGCCCCATTTAGGAGTTGAATTAAAAAAATATGAAGTAATATATATAGACAGAGTCGAGGGCATTTATTGTGTTTGCACTACTGTCAACAGTGCATATCTATTCACTTACTTTATTTGCTGGACATTAATTTCATGATGGTAACTTTTGGCTGCCTTCTGGTTCTGAAATGGATTACTTTGTGTAGTGGACGACTCAGTGAAGTTCAAGGAGGCTGCCAAGCATGGGAATTTGATCCCCCTCTACAGGTCTATATTCTCCGATCACTTAACTCCGGTCCTTGCTTACCGCTGTCTAGTGAAGGAAGATGATAGGGAAGCTCCGAGCTTCTTGTTCGAGTCTGTAGAGCCTGGTTTGAAAGCTTCTAATGTTGTAAGCTCTTTGTTCTACCTCCATTTAGTTCCTTGATTGAAGCTGGAATAGTCAAAGGAAATTATATTGCTCCAACTTTAAATGAATGATGGGTTTGAAATGAAATTAATATATTCAGAAATCATGTATAAGTACTATAACTCACAACTTAATATATTTAAAAATAGTTCAAATTGTTTCAGTTGCCAAATCTTGAAACTTCTTTTGTTCCAAAATAGTGATACTGAAGTCCTCTTCAGGAAGGAGGGAGTGGTGAGATTTACAAAGAGCACATAGGGAGTTATTGATGTTTGTATTCTCATTACCTGCACTACCTGTGTTGGCACAACTCTGAACAATCAAAAAATGTACTTGCTTGATTACACCTTGCTATGTTTGTTGATGAGTTAATTATGCTAGGGTCGATACAGTGTGATTGGGGCCCAGCCAACAATGGAAATTGTTGCAAAAGAGAACATGGTGACAATTATGGATCACCTTGAAGGAAGCAGAACAGAGGAATTTGAGGAAGATCCAATGAGCATTCCTCGTAGGATTATGGAAAAATGGAAACCTCAATGCATAAATGAGCTTCCTGAAGCATTTTGTGGTAATAAATTATACTTCAACTGCTTGAGTTTATTAGCATTTATACTAATGTAGCTTGAGTCAATGAATCATCTGCTGCTTCACTGTGGACAAATCTAGTAAATGCTCCTCGTTATCTTTGTAGTTAGTGTCTCATGCCAGGAGCATTGAACTTGCTTTAAGTAGCTGGAATGGACAATCTCTATAATCTATCCATTTTCGTTTTCTCCAACTTTTTTTTTTTGGATTTGTAAAGTGAGTCTTCTTAAATTAGAGACGCTATTTTTTAAAATATTTGTTTTCAAAGTAGAAAAGAACAATTGTAAGCTGAATGATTTTTTTCTGTGAGATAATAGTATTAATTATAGTTTACTTGTTAAGACGTTATCATAGAAAAGTATTATATCATTATATCAAACAGTAGTACAGTGCGTCCATTCAATTGATGTAAAACTCTTATGTGTACCTTCAGGATAATAAAATCATTACCTTTTCCATTGAAAAAAAGGGAAGGATAAAATCTAAAAAAAATAAAAATAATTATTAGTTACTGTGACAGAGTAATTAAAGAGACATTTAAATGATTTTGATTTCCCACAACATGAAGCAGAAAGAAGTGATGTGAAATGGAATCACATTTTAAGATGGTATACATATAAAATAAAAACTATTAGTAACTCTAATTTATAGTGGGAGAATGGAAGAGGAAGAGAACTGTCTTGTTGATTTACGCTATCAATTTAAGGAGTGTAATAATTGAAAATTATGCTAGTTTCATATATTTGAATAAAGTAAGAATTTAATCTGAAAAATCTAAGATGAAGTAAGAATCCACATCAAAAAGTTGGAAAGAGGGAAGGATGAAGAAATATTATGTGTTGAATAAGACTAGGCCTATAGGTTTCGGAAGGTATATGATAATTGATACCTTTATACACAAATTTCATTCGAGAAGGAGTAACTTAACTCTAAATAATGCTGTAGTTTTTCCTTTGCAGGAGGTTGGGTTGGTTTCTTCTCATATGATACTGTGCGTTACGTAGAGAAAAAGAAGCTACCTTTCTCAAATGCTCCAATGGATGATAGGAACCT</genome_strand>
        <mrna_strand>GCCGTATCTCACCACCGACCGGTTATCTCCGGCTCCGGTCACCGCTCCTCCATTTTCTCCGGTCACCGGGCCACTTCGCTCTCTTTTTCTAGTTCCCCTGTAGCGGCTGCTCGACTTCGGATTCTCAAATGCTCCGCTGCCGTTTCTCCTCCTTCATTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACGATTCAGTGAAGTTCAAGGAGGCTGCCAAGGATGGGAATTTGATCCCCCTCTACAGGTCTATATTCTCCGATCACTTAACTCCCGTCCTTGCTTACCGCTGTCTAGTGAAGGAAGATGATAGGGAAGCTCCGAGCTTCTTGTTCGAGTCTGTAGAGCCTGGTTTGAAAGCTTCTAATGTT...............................................................................................................................................................................................................................................................................................................................................................................................................GGTCGATACAGTGTGATTGGGGCCCAGCCGACAATGGAAATTGTTGCAAAGGAGAACATGGTGACAATTATGGATCACCTTGAAGGAAGCAGAACGGAGGAATTTGAGGAAGATCCCATGAGCATTCCTCGTAGGATTATGGAAAAATGGAAACCTCAATGCATAAATGAGCTTCCTGAAGCATTTTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTTGGGTTGGTTTTTTCTCATATGACACTGTGCGTTACGTAGAGAAAAAGAAGCTACCTTTCTCAAATGCTCCAATGGATGATAGGAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469498" ref_strand="+" ref_description="SGN-E469498 [cSTB-11-P24]">
      <seq>gccgtatctcaccaccgaccggttatctccggctccggtcaccgctcctccattttctccggtcaccgggccacttcgctctctttttctagttcccctgtagcggctgctcgacttcggattctcaaatgctccgctgccgtttctcctccttcattagtggacgattcagtgaagttcaaggaggctgccaaggatgggaatttgatccccctctacaggtctatattctccgatcacttaactcccgtccttgcttaccgctgtctagtgaaggaagatgatagggaagctccgagcttcttgttcgagtctgtagagcctggtttgaaagcttctaatgttggtcgatacagtgtgattggggcccagccgacaatggaaattgttgcaaaggagaacatggtgacaattatggatcaccttgaaggaagcagaacggaggaatttgaggaagatcccatgagcattcctcgtaggattatggaaaaatggaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65237" stop="68019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65537" g_stop="65696" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65697" i_stop="66981" i_length="1285">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66982" g_stop="67166" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="345" r_length="185" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67167" i_stop="67565" i_length="399">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67566" g_stop="67719" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="499" r_length="154" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E469498" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65537" e_stop="65696"/>
          <exon e_start="66982" e_stop="67166"/>
          <exon e_start="67566" e_stop="67719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTATCTCATCACCGACCGGTTATCTCCGGCACCGGTCACCGCTCCTCCATTTTCTCCGGTCACAGGGCTACTTCGCTCTCTTTCTCTAGGTCCCCTGTATCGGCTGCTCGACTTCGGATTCTCAAATGCTCCGCTGCTATTTCTCCTCCTTCATTAGGTAATCTTTGTGTTTGTTTAATTCAGTTGTTGGATCCAGAATTTATGACTGTAGTTACTTACCTAGATATTTAATTTGTTGAAATCTCAGTTATTGAATTAGTTTCGCCACCTTCATTTGGTATCCTCTATGTCTATTTAATCTAGAGATAGTTCTAGCATTTTAATTCGGCTAGTTTGGATTCTGCTGCATTGCTTACTCAGCTATATATGCGGCATTAATGTTTTTTTCTCTCAAATAAATAAATAAATCTTAACTGTATATATTTGATTTTGAAATGAATCCAAAAGTTTAAGTCATTGCCTTTTCTGCTTCTCTGGAACTTTAGCATTAATATGTACAAAAACTTTACTTTCAACTGCTGAAAAGTTTGGCTTCCTTCCATTTAATTTAGAGGTGGATTCAAGATTTTTTAGTGCAGAGAGTAGCGGATCCAGGATTTCCATTGAGGGGGGTTTAAAAAGAATGCTAAATAGTGCTGATTGATAAGCATGTTAGATCACATATGAGAGGCTACACTTGATTTCTATTGAATGGTAAAGTAAAAAGTTAGTTGGAACTTAGAAGAATTAAACAAGCAAGGAACCAAGATATATAGCTTAGCTCTTCATTGTACCAGATTTCAATCACTAATTTAATCAAGCAATTAATGATCAGCTTAATGAATAAATAAAAATAAAACATGATTAGCACTGTAACAAAGAAGAAGCCGTTTCATTTATTTAGAGAAAACAATTAACGCTGAAGCTAAAACATTAAAAAATGTTACTAGCCAGATTCGAACCCACACGCCTATTAAGCTCTGAACCCCCATAGCCGCTGAACCAAGCCCCTTACTTTGTTGAGGGGGTTAATGTTAAATATTTTAATAAACTACAGATTTGATCCTATATACACAGTGTGATTTTTATCAGAACCCCTGAACTCCATGTAGATCCGCCCTTGGGGACAGATAAGCGATGTGTTTCTTGATCCTATGTGGCAATCAACTTGAACTTATCATTGACAGCATAGAATATAAAGTTGCCACCCCTCTCCTCTAAATGAGTGCATTTACTTTTGGAATCGACCAAGAAAGGATCTTACCTCAAGATTTGACTGCCCCATTTAGGAGTTGAATTAAAAAAATATGAAGTAATATATATAGACAGAGTCGAGGGCATTTATTGTGTTTGCACTACTGTCAACAGTGCATATCTATTCACTTACTTTATTTGCTGGACATTAATTTCATGATGGTAACTTTTGGCTGCCTTCTGGTTCTGAAATGGATTACTTTGTGTAGTGGACGACTCAGTGAAGTTCAAGGAGGCTGCCAAGCATGGGAATTTGATCCCCCTCTACAGGTCTATATTCTCCGATCACTTAACTCCGGTCCTTGCTTACCGCTGTCTAGTGAAGGAAGATGATAGGGAAGCTCCGAGCTTCTTGTTCGAGTCTGTAGAGCCTGGTTTGAAAGCTTCTAATGTTGTAAGCTCTTTGTTCTACCTCCATTTAGTTCCTTGATTGAAGCTGGAATAGTCAAAGGAAATTATATTGCTCCAACTTTAAATGAATGATGGGTTTGAAATGAAATTAATATATTCAGAAATCATGTATAAGTACTATAACTCACAACTTAATATATTTAAAAATAGTTCAAATTGTTTCAGTTGCCAAATCTTGAAACTTCTTTTGTTCCAAAATAGTGATACTGAAGTCCTCTTCAGGAAGGAGGGAGTGGTGAGATTTACAAAGAGCACATAGGGAGTTATTGATGTTTGTATTCTCATTACCTGCACTACCTGTGTTGGCACAACTCTGAACAATCAAAAAATGTACTTGCTTGATTACACCTTGCTATGTTTGTTGATGAGTTAATTATGCTAGGGTCGATACAGTGTGATTGGGGCCCAGCCAACAATGGAAATTGTTGCAAAAGAGAACATGGTGACAATTATGGATCACCTTGAAGGAAGCAGAACAGAGGAATTTGAGGAAGATCCAATGAGCATTCCTCGTAGGATTATGGAAAAATGGAAAC</genome_strand>
        <mrna_strand>GCCGTATCTCACCACCGACCGGTTATCTCCGGCTCCGGTCACCGCTCCTCCATTTTCTCCGGTCACCGGGCCACTTCGCTCTCTTTTTCTAGTTCCCCTGTAGCGGCTGCTCGACTTCGGATTCTCAAATGCTCCGCTGCCGTTTCTCCTCCTTCATTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACGATTCAGTGAAGTTCAAGGAGGCTGCCAAGGATGGGAATTTGATCCCCCTCTACAGGTCTATATTCTCCGATCACTTAACTCCCGTCCTTGCTTACCGCTGTCTAGTGAAGGAAGATGATAGGGAAGCTCCGAGCTTCTTGTTCGAGTCTGTAGAGCCTGGTTTGAAAGCTTCTAATGTT...............................................................................................................................................................................................................................................................................................................................................................................................................GGTCGATACAGTGTGATTGGGGCCCAGCCGACAATGGAAATTGTTGCAAAGGAGAACATGGTGACAATTATGGATCACCTTGAAGGAAGCAGAACGGAGGAATTTGAGGAAGATCCCATGAGCATTCCTCGTAGGATTATGGAAAAATGGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443155" ref_strand="+" ref_description="SGN-E443155 [cSTA-36-B9]">
      <seq>accaccgaccgtttatctccggctccggttaccgctcctccgttttctccggtcaccgggccacttcgctctctttttctagttcccctgtagcggctgctcgacttcggattctcaaatgctccgctgccgtttctcctccttcattagtggacgattcagtgaagttcaaggaggctgccaaggatgggaatttgatccccctctacaggtctatattctccgatcacttaactccggtccttgcttaccgctgtctagtgaaggaagatgatagggaagctccgagcttcttgttcgagtctgtagagcctggtttgaaagcttctaatgttggtcgatacagtgtgattggggcccagccgacaatggaaattgttgcaaaagagaacatggtgacaattatggatcaccttgaaggaagcagaacggaggaatttgaggaagatcccatgagcattcctcgtaggattatggaaaaatggaaacctcaatgcataaatgagcttcctgaagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65247" stop="68049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65547" g_stop="65696" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65697" i_stop="66981" i_length="1285">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66982" g_stop="67166" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="335" r_length="185" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67167" i_stop="67565" i_length="399">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67566" g_stop="67749" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="519" r_length="184" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E443155" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65547" e_stop="65696"/>
          <exon e_start="66982" e_stop="67166"/>
          <exon e_start="67566" e_stop="67749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACCGACCGGTTATCTCCGGCACCGGTCACCGCTCCTCCATTTTCTCCGGTCACAGGGCTACTTCGCTCTCTTTCTCTAGGTCCCCTGTATCGGCTGCTCGACTTCGGATTCTCAAATGCTCCGCTGCTATTTCTCCTCCTTCATTAGGTAATCTTTGTGTTTGTTTAATTCAGTTGTTGGATCCAGAATTTATGACTGTAGTTACTTACCTAGATATTTAATTTGTTGAAATCTCAGTTATTGAATTAGTTTCGCCACCTTCATTTGGTATCCTCTATGTCTATTTAATCTAGAGATAGTTCTAGCATTTTAATTCGGCTAGTTTGGATTCTGCTGCATTGCTTACTCAGCTATATATGCGGCATTAATGTTTTTTTCTCTCAAATAAATAAATAAATCTTAACTGTATATATTTGATTTTGAAATGAATCCAAAAGTTTAAGTCATTGCCTTTTCTGCTTCTCTGGAACTTTAGCATTAATATGTACAAAAACTTTACTTTCAACTGCTGAAAAGTTTGGCTTCCTTCCATTTAATTTAGAGGTGGATTCAAGATTTTTTAGTGCAGAGAGTAGCGGATCCAGGATTTCCATTGAGGGGGGTTTAAAAAGAATGCTAAATAGTGCTGATTGATAAGCATGTTAGATCACATATGAGAGGCTACACTTGATTTCTATTGAATGGTAAAGTAAAAAGTTAGTTGGAACTTAGAAGAATTAAACAAGCAAGGAACCAAGATATATAGCTTAGCTCTTCATTGTACCAGATTTCAATCACTAATTTAATCAAGCAATTAATGATCAGCTTAATGAATAAATAAAAATAAAACATGATTAGCACTGTAACAAAGAAGAAGCCGTTTCATTTATTTAGAGAAAACAATTAACGCTGAAGCTAAAACATTAAAAAATGTTACTAGCCAGATTCGAACCCACACGCCTATTAAGCTCTGAACCCCCATAGCCGCTGAACCAAGCCCCTTACTTTGTTGAGGGGGTTAATGTTAAATATTTTAATAAACTACAGATTTGATCCTATATACACAGTGTGATTTTTATCAGAACCCCTGAACTCCATGTAGATCCGCCCTTGGGGACAGATAAGCGATGTGTTTCTTGATCCTATGTGGCAATCAACTTGAACTTATCATTGACAGCATAGAATATAAAGTTGCCACCCCTCTCCTCTAAATGAGTGCATTTACTTTTGGAATCGACCAAGAAAGGATCTTACCTCAAGATTTGACTGCCCCATTTAGGAGTTGAATTAAAAAAATATGAAGTAATATATATAGACAGAGTCGAGGGCATTTATTGTGTTTGCACTACTGTCAACAGTGCATATCTATTCACTTACTTTATTTGCTGGACATTAATTTCATGATGGTAACTTTTGGCTGCCTTCTGGTTCTGAAATGGATTACTTTGTGTAGTGGACGACTCAGTGAAGTTCAAGGAGGCTGCCAAGCATGGGAATTTGATCCCCCTCTACAGGTCTATATTCTCCGATCACTTAACTCCGGTCCTTGCTTACCGCTGTCTAGTGAAGGAAGATGATAGGGAAGCTCCGAGCTTCTTGTTCGAGTCTGTAGAGCCTGGTTTGAAAGCTTCTAATGTTGTAAGCTCTTTGTTCTACCTCCATTTAGTTCCTTGATTGAAGCTGGAATAGTCAAAGGAAATTATATTGCTCCAACTTTAAATGAATGATGGGTTTGAAATGAAATTAATATATTCAGAAATCATGTATAAGTACTATAACTCACAACTTAATATATTTAAAAATAGTTCAAATTGTTTCAGTTGCCAAATCTTGAAACTTCTTTTGTTCCAAAATAGTGATACTGAAGTCCTCTTCAGGAAGGAGGGAGTGGTGAGATTTACAAAGAGCACATAGGGAGTTATTGATGTTTGTATTCTCATTACCTGCACTACCTGTGTTGGCACAACTCTGAACAATCAAAAAATGTACTTGCTTGATTACACCTTGCTATGTTTGTTGATGAGTTAATTATGCTAGGGTCGATACAGTGTGATTGGGGCCCAGCCAACAATGGAAATTGTTGCAAAAGAGAACATGGTGACAATTATGGATCACCTTGAAGGAAGCAGAACAGAGGAATTTGAGGAAGATCCAATGAGCATTCCTCGTAGGATTATGGAAAAATGGAAACCTCAATGCATAAATGAGCTTCCTGAAGCAT</genome_strand>
        <mrna_strand>ACCACCGACCGTTTATCTCCGGCTCCGGTTACCGCTCCTCCGTTTTCTCCGGTCACCGGGCCACTTCGCTCTCTTTTTCTAGTTCCCCTGTAGCGGCTGCTCGACTTCGGATTCTCAAATGCTCCGCTGCCGTTTCTCCTCCTTCATTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACGATTCAGTGAAGTTCAAGGAGGCTGCCAAGGATGGGAATTTGATCCCCCTCTACAGGTCTATATTCTCCGATCACTTAACTCCGGTCCTTGCTTACCGCTGTCTAGTGAAGGAAGATGATAGGGAAGCTCCGAGCTTCTTGTTCGAGTCTGTAGAGCCTGGTTTGAAAGCTTCTAATGTT...............................................................................................................................................................................................................................................................................................................................................................................................................GGTCGATACAGTGTGATTGGGGCCCAGCCGACAATGGAAATTGTTGCAAAAGAGAACATGGTGACAATTATGGATCACCTTGAAGGAAGCAGAACGGAGGAATTTGAGGAAGATCCCATGAGCATTCCTCGTAGGATTATGGAAAAATGGAAACCTCAATGCATAAATGAGCTTCCTGAAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698409" ref_strand="+" ref_description="SGN-E698409 [FA06AH05]">
      <seq>caccgaccggttatctccggcaccggtcaccgctcctccattttctctggtcacagggctacttcgctctctttctctaggtcccctgtatcggctgctcgacttcggattctcaaatgctccgctgctatttctcctccttcattagtggacgactcagtgaagttcaaggaggctgccaagcatgggaatttgatccccctttacaggtctatattctccgatcacttaactccggtccttgcttaccgctgtctagtgaaggaagatgatagggaagctccgagcttcttgttcgagtctgtagagcctggtttgaaagcttctaatgttggtcgatacagtgtgattggggcccagccaacaatggaaattgttgcaaaagagaacatggtgacaattatggatcaccttgaaggaagcagaacagaggaatttgaggaagatccaatgagcattcctcgtaggattatggaaaaatggaaacctcaatgcataaatgagcttcctgaagcattttgtggaggttgggttggtttcttctcatatgatactgtgcgttacgtagagaaaaagaagcctacctttctcaaatgctcccaatggatgataggaaccttcctgatcttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65249" stop="69138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65549" g_stop="65696" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65697" i_stop="66981" i_length="1285">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66982" g_stop="67166" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="333" r_length="185" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67167" i_stop="67565" i_length="399">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67566" g_stop="67755" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="523" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67756" i_stop="68731" i_length="976">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68732" g_stop="68838" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="632" r_length="109" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E698409" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65549" e_stop="65696"/>
          <exon e_start="66982" e_stop="67166"/>
          <exon e_start="67566" e_stop="67755"/>
          <exon e_start="68732" e_stop="68838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCGACCGGTTATCTCCGGCACCGGTCACCGCTCCTCCATTTTCTCCGGTCACAGGGCTACTTCGCTCTCTTTCTCTAGGTCCCCTGTATCGGCTGCTCGACTTCGGATTCTCAAATGCTCCGCTGCTATTTCTCCTCCTTCATTAGGTAATCTTTGTGTTTGTTTAATTCAGTTGTTGGATCCAGAATTTATGACTGTAGTTACTTACCTAGATATTTAATTTGTTGAAATCTCAGTTATTGAATTAGTTTCGCCACCTTCATTTGGTATCCTCTATGTCTATTTAATCTAGAGATAGTTCTAGCATTTTAATTCGGCTAGTTTGGATTCTGCTGCATTGCTTACTCAGCTATATATGCGGCATTAATGTTTTTTTCTCTCAAATAAATAAATAAATCTTAACTGTATATATTTGATTTTGAAATGAATCCAAAAGTTTAAGTCATTGCCTTTTCTGCTTCTCTGGAACTTTAGCATTAATATGTACAAAAACTTTACTTTCAACTGCTGAAAAGTTTGGCTTCCTTCCATTTAATTTAGAGGTGGATTCAAGATTTTTTAGTGCAGAGAGTAGCGGATCCAGGATTTCCATTGAGGGGGGTTTAAAAAGAATGCTAAATAGTGCTGATTGATAAGCATGTTAGATCACATATGAGAGGCTACACTTGATTTCTATTGAATGGTAAAGTAAAAAGTTAGTTGGAACTTAGAAGAATTAAACAAGCAAGGAACCAAGATATATAGCTTAGCTCTTCATTGTACCAGATTTCAATCACTAATTTAATCAAGCAATTAATGATCAGCTTAATGAATAAATAAAAATAAAACATGATTAGCACTGTAACAAAGAAGAAGCCGTTTCATTTATTTAGAGAAAACAATTAACGCTGAAGCTAAAACATTAAAAAATGTTACTAGCCAGATTCGAACCCACACGCCTATTAAGCTCTGAACCCCCATAGCCGCTGAACCAAGCCCCTTACTTTGTTGAGGGGGTTAATGTTAAATATTTTAATAAACTACAGATTTGATCCTATATACACAGTGTGATTTTTATCAGAACCCCTGAACTCCATGTAGATCCGCCCTTGGGGACAGATAAGCGATGTGTTTCTTGATCCTATGTGGCAATCAACTTGAACTTATCATTGACAGCATAGAATATAAAGTTGCCACCCCTCTCCTCTAAATGAGTGCATTTACTTTTGGAATCGACCAAGAAAGGATCTTACCTCAAGATTTGACTGCCCCATTTAGGAGTTGAATTAAAAAAATATGAAGTAATATATATAGACAGAGTCGAGGGCATTTATTGTGTTTGCACTACTGTCAACAGTGCATATCTATTCACTTACTTTATTTGCTGGACATTAATTTCATGATGGTAACTTTTGGCTGCCTTCTGGTTCTGAAATGGATTACTTTGTGTAGTGGACGACTCAGTGAAGTTCAAGGAGGCTGCCAAGCATGGGAATTTGATCCCCCTCTACAGGTCTATATTCTCCGATCACTTAACTCCGGTCCTTGCTTACCGCTGTCTAGTGAAGGAAGATGATAGGGAAGCTCCGAGCTTCTTGTTCGAGTCTGTAGAGCCTGGTTTGAAAGCTTCTAATGTTGTAAGCTCTTTGTTCTACCTCCATTTAGTTCCTTGATTGAAGCTGGAATAGTCAAAGGAAATTATATTGCTCCAACTTTAAATGAATGATGGGTTTGAAATGAAATTAATATATTCAGAAATCATGTATAAGTACTATAACTCACAACTTAATATATTTAAAAATAGTTCAAATTGTTTCAGTTGCCAAATCTTGAAACTTCTTTTGTTCCAAAATAGTGATACTGAAGTCCTCTTCAGGAAGGAGGGAGTGGTGAGATTTACAAAGAGCACATAGGGAGTTATTGATGTTTGTATTCTCATTACCTGCACTACCTGTGTTGGCACAACTCTGAACAATCAAAAAATGTACTTGCTTGATTACACCTTGCTATGTTTGTTGATGAGTTAATTATGCTAGGGTCGATACAGTGTGATTGGGGCCCAGCCAACAATGGAAATTGTTGCAAAAGAGAACATGGTGACAATTATGGATCACCTTGAAGGAAGCAGAACAGAGGAATTTGAGGAAGATCCAATGAGCATTCCTCGTAGGATTATGGAAAAATGGAAACCTCAATGCATAAATGAGCTTCCTGAAGCATTTTGTGGTAATAAATTATACTTCAACTGCTTGAGTTTATTAGCATTTATACTAATGTAGCTTGAGTCAATGAATCATCTGCTGCTTCACTGTGGACAAATCTAGTAAATGCTCCTCGTTATCTTTGTAGTTAGTGTCTCATGCCAGGAGCATTGAACTTGCTTTAAGTAGCTGGAATGGACAATCTCTATAATCTATCCATTTTCGTTTTCTCCAACTTTTTTTTTTTGGATTTGTAAAGTGAGTCTTCTTAAATTAGAGACGCTATTTTTTAAAATATTTGTTTTCAAAGTAGAAAAGAACAATTGTAAGCTGAATGATTTTTTTCTGTGAGATAATAGTATTAATTATAGTTTACTTGTTAAGACGTTATCATAGAAAAGTATTATATCATTATATCAAACAGTAGTACAGTGCGTCCATTCAATTGATGTAAAACTCTTATGTGTACCTTCAGGATAATAAAATCATTACCTTTTCCATTGAAAAAAAGGGAAGGATAAAATCTAAAAAAAATAAAAATAATTATTAGTTACTGTGACAGAGTAATTAAAGAGACATTTAAATGATTTTGATTTCCCACAACATGAAGCAGAAAGAAGTGATGTGAAATGGAATCACATTTTAAGATGGTATACATATAAAATAAAAACTATTAGTAACTCTAATTTATAGTGGGAGAATGGAAGAGGAAGAGAACTGTCTTGTTGATTTACGCTATCAATTTAAGGAGTGTAATAATTGAAAATTATGCTAGTTTCATATATTTGAATAAAGTAAGAATTTAATCTGAAAAATCTAAGATGAAGTAAGAATCCACATCAAAAAGTTGGAAAGAGGGAAGGATGAAGAAATATTATGTGTTGAATAAGACTAGGCCTATAGGTTTCGGAAGGTATATGATAATTGATACCTTTATACACAAATTTCATTCGAGAAGGAGTAACTTAACTCTAAATAATGCTGTAGTTTTTCCTTTGCAGGAGGTTGGGTTGGTTTCTTCTCATATGATACTGTGCGTTACGTAGAGAAAAAGAAG-CTACCTTTCTCAAATGCT-CCAATGGATGATAGGAACCTTCCTGATCTTCAT</genome_strand>
        <mrna_strand>CACCGACCGGTTATCTCCGGCACCGGTCACCGCTCCTCCATTTTCTCTGGTCACAGGGCTACTTCGCTCTCTTTCTCTAGGTCCCCTGTATCGGCTGCTCGACTTCGGATTCTCAAATGCTCCGCTGCTATTTCTCCTCCTTCATTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACGACTCAGTGAAGTTCAAGGAGGCTGCCAAGCATGGGAATTTGATCCCCCTTTACAGGTCTATATTCTCCGATCACTTAACTCCGGTCCTTGCTTACCGCTGTCTAGTGAAGGAAGATGATAGGGAAGCTCCGAGCTTCTTGTTCGAGTCTGTAGAGCCTGGTTTGAAAGCTTCTAATGTT...............................................................................................................................................................................................................................................................................................................................................................................................................GGTCGATACAGTGTGATTGGGGCCCAGCCAACAATGGAAATTGTTGCAAAAGAGAACATGGTGACAATTATGGATCACCTTGAAGGAAGCAGAACAGAGGAATTTGAGGAAGATCCAATGAGCATTCCTCGTAGGATTATGGAAAAATGGAAACCTCAATGCATAAATGAGCTTCCTGAAGCATTTTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTTGGGTTGGTTTCTTCTCATATGATACTGTGCGTTACGTAGAGAAAAAGAAGCCTACCTTTCTCAAATGCTCCCAATGGATGATAGGAACCTTCCTGATCTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307940" ref_strand="+" ref_description="SGN-E307940 [cLEZ-7-H6]">
      <seq>tcggctgctcgacttcggattctcaaatgctccgctgctatttctcctccttcattagtggacgactcagtgaagttcaaggaggctgccaagcatgggaatttgatccccctctacaggtctatattctccgatcacttaactccggtccttgcttaccgctgtctagtgaaggaagatgatagggaagctccgagcttcttgttcgagtctgtagagcctggtttgaaagcttctaatgttggtcgatacagtgtgattggggcccagccaacaatggaaattgttgcaaaagagaacatggtgacaattatggatcaccttgaaggaagcagaacagaggaatttgaggaagatccaatgagcattcctcgtaggattatggaaaaatggaaacctcaatgcataaatgagcttcctgaagcattttgtggaggttgggttggtttcttctcatatgatactgtgcgttacgtagagaaaaagaagctacctttctcaaatgctccaatggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65339" stop="69116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65639" g_stop="65696" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65697" i_stop="66981" i_length="1285">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66982" g_stop="67166" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="243" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67167" i_stop="67565" i_length="399">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67566" g_stop="67755" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="433" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67756" i_stop="68731" i_length="976">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68732" g_stop="68816" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="518" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E307940" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65639" e_stop="65696"/>
          <exon e_start="66982" e_stop="67166"/>
          <exon e_start="67566" e_stop="67755"/>
          <exon e_start="68732" e_stop="68816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGCTGCTCGACTTCGGATTCTCAAATGCTCCGCTGCTATTTCTCCTCCTTCATTAGGTAATCTTTGTGTTTGTTTAATTCAGTTGTTGGATCCAGAATTTATGACTGTAGTTACTTACCTAGATATTTAATTTGTTGAAATCTCAGTTATTGAATTAGTTTCGCCACCTTCATTTGGTATCCTCTATGTCTATTTAATCTAGAGATAGTTCTAGCATTTTAATTCGGCTAGTTTGGATTCTGCTGCATTGCTTACTCAGCTATATATGCGGCATTAATGTTTTTTTCTCTCAAATAAATAAATAAATCTTAACTGTATATATTTGATTTTGAAATGAATCCAAAAGTTTAAGTCATTGCCTTTTCTGCTTCTCTGGAACTTTAGCATTAATATGTACAAAAACTTTACTTTCAACTGCTGAAAAGTTTGGCTTCCTTCCATTTAATTTAGAGGTGGATTCAAGATTTTTTAGTGCAGAGAGTAGCGGATCCAGGATTTCCATTGAGGGGGGTTTAAAAAGAATGCTAAATAGTGCTGATTGATAAGCATGTTAGATCACATATGAGAGGCTACACTTGATTTCTATTGAATGGTAAAGTAAAAAGTTAGTTGGAACTTAGAAGAATTAAACAAGCAAGGAACCAAGATATATAGCTTAGCTCTTCATTGTACCAGATTTCAATCACTAATTTAATCAAGCAATTAATGATCAGCTTAATGAATAAATAAAAATAAAACATGATTAGCACTGTAACAAAGAAGAAGCCGTTTCATTTATTTAGAGAAAACAATTAACGCTGAAGCTAAAACATTAAAAAATGTTACTAGCCAGATTCGAACCCACACGCCTATTAAGCTCTGAACCCCCATAGCCGCTGAACCAAGCCCCTTACTTTGTTGAGGGGGTTAATGTTAAATATTTTAATAAACTACAGATTTGATCCTATATACACAGTGTGATTTTTATCAGAACCCCTGAACTCCATGTAGATCCGCCCTTGGGGACAGATAAGCGATGTGTTTCTTGATCCTATGTGGCAATCAACTTGAACTTATCATTGACAGCATAGAATATAAAGTTGCCACCCCTCTCCTCTAAATGAGTGCATTTACTTTTGGAATCGACCAAGAAAGGATCTTACCTCAAGATTTGACTGCCCCATTTAGGAGTTGAATTAAAAAAATATGAAGTAATATATATAGACAGAGTCGAGGGCATTTATTGTGTTTGCACTACTGTCAACAGTGCATATCTATTCACTTACTTTATTTGCTGGACATTAATTTCATGATGGTAACTTTTGGCTGCCTTCTGGTTCTGAAATGGATTACTTTGTGTAGTGGACGACTCAGTGAAGTTCAAGGAGGCTGCCAAGCATGGGAATTTGATCCCCCTCTACAGGTCTATATTCTCCGATCACTTAACTCCGGTCCTTGCTTACCGCTGTCTAGTGAAGGAAGATGATAGGGAAGCTCCGAGCTTCTTGTTCGAGTCTGTAGAGCCTGGTTTGAAAGCTTCTAATGTTGTAAGCTCTTTGTTCTACCTCCATTTAGTTCCTTGATTGAAGCTGGAATAGTCAAAGGAAATTATATTGCTCCAACTTTAAATGAATGATGGGTTTGAAATGAAATTAATATATTCAGAAATCATGTATAAGTACTATAACTCACAACTTAATATATTTAAAAATAGTTCAAATTGTTTCAGTTGCCAAATCTTGAAACTTCTTTTGTTCCAAAATAGTGATACTGAAGTCCTCTTCAGGAAGGAGGGAGTGGTGAGATTTACAAAGAGCACATAGGGAGTTATTGATGTTTGTATTCTCATTACCTGCACTACCTGTGTTGGCACAACTCTGAACAATCAAAAAATGTACTTGCTTGATTACACCTTGCTATGTTTGTTGATGAGTTAATTATGCTAGGGTCGATACAGTGTGATTGGGGCCCAGCCAACAATGGAAATTGTTGCAAAAGAGAACATGGTGACAATTATGGATCACCTTGAAGGAAGCAGAACAGAGGAATTTGAGGAAGATCCAATGAGCATTCCTCGTAGGATTATGGAAAAATGGAAACCTCAATGCATAAATGAGCTTCCTGAAGCATTTTGTGGTAATAAATTATACTTCAACTGCTTGAGTTTATTAGCATTTATACTAATGTAGCTTGAGTCAATGAATCATCTGCTGCTTCACTGTGGACAAATCTAGTAAATGCTCCTCGTTATCTTTGTAGTTAGTGTCTCATGCCAGGAGCATTGAACTTGCTTTAAGTAGCTGGAATGGACAATCTCTATAATCTATCCATTTTCGTTTTCTCCAACTTTTTTTTTTTGGATTTGTAAAGTGAGTCTTCTTAAATTAGAGACGCTATTTTTTAAAATATTTGTTTTCAAAGTAGAAAAGAACAATTGTAAGCTGAATGATTTTTTTCTGTGAGATAATAGTATTAATTATAGTTTACTTGTTAAGACGTTATCATAGAAAAGTATTATATCATTATATCAAACAGTAGTACAGTGCGTCCATTCAATTGATGTAAAACTCTTATGTGTACCTTCAGGATAATAAAATCATTACCTTTTCCATTGAAAAAAAGGGAAGGATAAAATCTAAAAAAAATAAAAATAATTATTAGTTACTGTGACAGAGTAATTAAAGAGACATTTAAATGATTTTGATTTCCCACAACATGAAGCAGAAAGAAGTGATGTGAAATGGAATCACATTTTAAGATGGTATACATATAAAATAAAAACTATTAGTAACTCTAATTTATAGTGGGAGAATGGAAGAGGAAGAGAACTGTCTTGTTGATTTACGCTATCAATTTAAGGAGTGTAATAATTGAAAATTATGCTAGTTTCATATATTTGAATAAAGTAAGAATTTAATCTGAAAAATCTAAGATGAAGTAAGAATCCACATCAAAAAGTTGGAAAGAGGGAAGGATGAAGAAATATTATGTGTTGAATAAGACTAGGCCTATAGGTTTCGGAAGGTATATGATAATTGATACCTTTATACACAAATTTCATTCGAGAAGGAGTAACTTAACTCTAAATAATGCTGTAGTTTTTCCTTTGCAGGAGGTTGGGTTGGTTTCTTCTCATATGATACTGTGCGTTACGTAGAGAAAAAGAAGCTACCTTTCTCAAATGCTCCAATGGATGA</genome_strand>
        <mrna_strand>TCGGCTGCTCGACTTCGGATTCTCAAATGCTCCGCTGCTATTTCTCCTCCTTCATTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACGACTCAGTGAAGTTCAAGGAGGCTGCCAAGCATGGGAATTTGATCCCCCTCTACAGGTCTATATTCTCCGATCACTTAACTCCGGTCCTTGCTTACCGCTGTCTAGTGAAGGAAGATGATAGGGAAGCTCCGAGCTTCTTGTTCGAGTCTGTAGAGCCTGGTTTGAAAGCTTCTAATGTT...............................................................................................................................................................................................................................................................................................................................................................................................................GGTCGATACAGTGTGATTGGGGCCCAGCCAACAATGGAAATTGTTGCAAAAGAGAACATGGTGACAATTATGGATCACCTTGAAGGAAGCAGAACAGAGGAATTTGAGGAAGATCCAATGAGCATTCCTCGTAGGATTATGGAAAAATGGAAACCTCAATGCATAAATGAGCTTCCTGAAGCATTTTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTTGGGTTGGTTTCTTCTCATATGATACTGTGCGTTACGTAGAGAAAAAGAAGCTACCTTTCTCAAATGCTCCAATGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268028" ref_strand="+" ref_description="SGN-E268028 [cLEI-15-B17]">
      <seq>gcaaaatagaacatgttgacaattatggatcaccttgggggaagcagaacatatgaatttgaggaagatccaataaccattcctagtatgattatggaaaaatggaaacctcaatgcataaatgagcttcctgaagcattttgtggaggttgggttggtttcttctcatatgatactgtgcgttacgtagagaaaaagaagctacctttctcaaatgctccaatggatgataggaaccttcctgatcttcatctaagactttatgatgatgtaattgtgtttgatcatgtggaaaagaaagcatttgtcatacattgggtgcggttagatcgctttgcttcagtagaggaggcctacaatgatggtacaaccagattagaagctttgttgtctagagtacatgatattgtacctcctacactggcttcagggtcgataaaacttcatactagtctatttggtacttcattgaaaaattcaaccatgacaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67311" stop="70142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67611" g_stop="67755" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67756" i_stop="68731" i_length="976">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68732" g_stop="68883" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="297" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68884" i_stop="69554" i_length="671">
            <donor d_prob="0.950" d_score="0.98"/>
            <acceptor a_prob="0.625" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69555" g_stop="69670" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="413" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69671" i_stop="69763" i_length="93">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69764" g_stop="69842" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="492" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E268028" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67611" e_stop="67755"/>
          <exon e_start="68732" e_stop="68883"/>
          <exon e_start="69555" e_stop="69670"/>
          <exon e_start="69764" e_stop="69842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAAGAGAACATGGTGACAATTATGGATCACCTTGAAGGAAGCAGAACAGAGGAATTTGAGGAAGATCCAATGAGCATTCCTCGTAGGATTATGGAAAAATGGAAACCTCAATGCATAAATGAGCTTCCTGAAGCATTTTGTGGTAATAAATTATACTTCAACTGCTTGAGTTTATTAGCATTTATACTAATGTAGCTTGAGTCAATGAATCATCTGCTGCTTCACTGTGGACAAATCTAGTAAATGCTCCTCGTTATCTTTGTAGTTAGTGTCTCATGCCAGGAGCATTGAACTTGCTTTAAGTAGCTGGAATGGACAATCTCTATAATCTATCCATTTTCGTTTTCTCCAACTTTTTTTTTTTGGATTTGTAAAGTGAGTCTTCTTAAATTAGAGACGCTATTTTTTAAAATATTTGTTTTCAAAGTAGAAAAGAACAATTGTAAGCTGAATGATTTTTTTCTGTGAGATAATAGTATTAATTATAGTTTACTTGTTAAGACGTTATCATAGAAAAGTATTATATCATTATATCAAACAGTAGTACAGTGCGTCCATTCAATTGATGTAAAACTCTTATGTGTACCTTCAGGATAATAAAATCATTACCTTTTCCATTGAAAAAAAGGGAAGGATAAAATCTAAAAAAAATAAAAATAATTATTAGTTACTGTGACAGAGTAATTAAAGAGACATTTAAATGATTTTGATTTCCCACAACATGAAGCAGAAAGAAGTGATGTGAAATGGAATCACATTTTAAGATGGTATACATATAAAATAAAAACTATTAGTAACTCTAATTTATAGTGGGAGAATGGAAGAGGAAGAGAACTGTCTTGTTGATTTACGCTATCAATTTAAGGAGTGTAATAATTGAAAATTATGCTAGTTTCATATATTTGAATAAAGTAAGAATTTAATCTGAAAAATCTAAGATGAAGTAAGAATCCACATCAAAAAGTTGGAAAGAGGGAAGGATGAAGAAATATTATGTGTTGAATAAGACTAGGCCTATAGGTTTCGGAAGGTATATGATAATTGATACCTTTATACACAAATTTCATTCGAGAAGGAGTAACTTAACTCTAAATAATGCTGTAGTTTTTCCTTTGCAGGAGGTTGGGTTGGTTTCTTCTCATATGATACTGTGCGTTACGTAGAGAAAAAGAAGCTACCTTTCTCAAATGCTCCAATGGATGATAGGAACCTTCCTGATCTTCATCTAGGACTTTATGATGATGTAATTGTGTTTGATCATGTGGAAAAGGTAGTTTAATTTTCTGTACCCAACAAACCTTCAATTTATTTTGTTTTCCAGATTTATATTAACCTATTTTTTTCCTATGGCCCATCTGGTTCATGAACATATGCTTTAGCTCTCAATGAAGTGCTTCAATATAAGCACTTCGATTTCACTTTTTGTACTAGGATAAATTTCTTCAATTTGTCGTGCATATTTGCCATTCATTATGGTGTTCTCTTTATTTTTCATTGAATTTCTTGGGTTTGAATATGTGGAATTGAGTAGTTAGTATCCCACATCGATGGTGATTGTGGCAATTTTTCTTCATATATGTTCTTTGACAATCCTCGTTCGATGAGCTATCTTTTGAAGTTGAGTTATGTCCTAGATCCATTTCTAAACATGCATGGTATGAGAGCTAGATCATTTACATTCTTGGTTTACCCAATGTTGGATACCCATATTATGTTGTCCGTGCAGGGGATGTGAAGTGTCTCACATTGGTAGAGGAAATGGGTTATTGTTTGGCCATGCTCACCCTTTGAGCTAGCTTTAGAATTGAATTAGCTTTTAGTGTTGGCTTATGCATAAGGTGCATTTCTTTACATGATTACTTTCATGATCAACTTCTAGTAGTAAGGTAATTATTTTTCAAGGTATTATGGTCCATTACTCAAATTTCTGCTTGATACCAGAAAGCATTTGTCATACATTGGGTGCGGTTAGATCGCTTTGCTTCAGTAGAGGAGGCCTACAATGATGGTACAACCAGATTAGAAGCTTTGTTGTCTAGAGTACATGATATTGTACCGTAAGTTAATTTCACTTCCTCTTCCAATAATTCTAACCTTATTTTCTGCTCCTTTCCTTTCCTTTATTTGGTTGTACTGGTTTCTTCTTTTAGTCCTACACTGGCTTCAGGGTCGATAAAACTTCATACTAGTCTATTTGGTACTTCATTGAAAAATTCAACCATGACAAGC</genome_strand>
        <mrna_strand>GCAAAATAGAACATGTTGACAATTATGGATCACCTTGGGGGAAGCAGAACATATGAATTTGAGGAAGATCCAATAACCATTCCTAGTATGATTATGGAAAAATGGAAACCTCAATGCATAAATGAGCTTCCTGAAGCATTTTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTTGGGTTGGTTTCTTCTCATATGATACTGTGCGTTACGTAGAGAAAAAGAAGCTACCTTTCTCAAATGCTCCAATGGATGATAGGAACCTTCCTGATCTTCATCTAAGACTTTATGATGATGTAATTGTGTTTGATCATGTGGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCATTTGTCATACATTGGGTGCGGTTAGATCGCTTTGCTTCAGTAGAGGAGGCCTACAATGATGGTACAACCAGATTAGAAGCTTTGTTGTCTAGAGTACATGATATTGTACC.............................................................................................TCCTACACTGGCTTCAGGGTCGATAAAACTTCATACTAGTCTATTTGGTACTTCATTGAAAAATTCAACCATGACAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440267" ref_strand="+" ref_description="SGN-E440267 [cSTA-16-M1]">
      <seq>gttacgtagagaaaaagaagctacctttctcaaatgctccaatggatgataggaaccttcctgatcttcatctaggcctttatgatgatgtaattgtgtttgatcatgtggaaaagaaagcatttgtcatacattgggtgcggttagatcgatttgcttcagtagaggaggcctacaatgatggtacaaccagattagaagcattgttgtgtagagtacatgatattgtacctcctacgctggcttcagggtcgataaaacttcatactagcctatttggtacttcattgaaaaagtcaaatatgacaagcgaagactaccagagggctgttttaaaggccaaggaacatatccttgctggggacattttccaaattgttcttagccaacgttttgaaagacgaacatttgcagatccatttgaagtatacagagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68468" stop="70269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68768" g_stop="68883" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68884" i_stop="69554" i_length="671">
            <donor d_prob="0.950" d_score="0.98"/>
            <acceptor a_prob="0.625" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69555" g_stop="69670" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="232" r_length="116" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69671" i_stop="69763" i_length="93">
            <donor d_prob="0.972" d_score="0.96"/>
            <acceptor a_prob="0.885" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69764" g_stop="69969" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="438" r_length="206" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E440267" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68768" e_stop="68883"/>
          <exon e_start="69555" e_stop="69670"/>
          <exon e_start="69764" e_stop="69969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACGTAGAGAAAAAGAAGCTACCTTTCTCAAATGCTCCAATGGATGATAGGAACCTTCCTGATCTTCATCTAGGACTTTATGATGATGTAATTGTGTTTGATCATGTGGAAAAGGTAGTTTAATTTTCTGTACCCAACAAACCTTCAATTTATTTTGTTTTCCAGATTTATATTAACCTATTTTTTTCCTATGGCCCATCTGGTTCATGAACATATGCTTTAGCTCTCAATGAAGTGCTTCAATATAAGCACTTCGATTTCACTTTTTGTACTAGGATAAATTTCTTCAATTTGTCGTGCATATTTGCCATTCATTATGGTGTTCTCTTTATTTTTCATTGAATTTCTTGGGTTTGAATATGTGGAATTGAGTAGTTAGTATCCCACATCGATGGTGATTGTGGCAATTTTTCTTCATATATGTTCTTTGACAATCCTCGTTCGATGAGCTATCTTTTGAAGTTGAGTTATGTCCTAGATCCATTTCTAAACATGCATGGTATGAGAGCTAGATCATTTACATTCTTGGTTTACCCAATGTTGGATACCCATATTATGTTGTCCGTGCAGGGGATGTGAAGTGTCTCACATTGGTAGAGGAAATGGGTTATTGTTTGGCCATGCTCACCCTTTGAGCTAGCTTTAGAATTGAATTAGCTTTTAGTGTTGGCTTATGCATAAGGTGCATTTCTTTACATGATTACTTTCATGATCAACTTCTAGTAGTAAGGTAATTATTTTTCAAGGTATTATGGTCCATTACTCAAATTTCTGCTTGATACCAGAAAGCATTTGTCATACATTGGGTGCGGTTAGATCGCTTTGCTTCAGTAGAGGAGGCCTACAATGATGGTACAACCAGATTAGAAGCTTTGTTGTCTAGAGTACATGATATTGTACCGTAAGTTAATTTCACTTCCTCTTCCAATAATTCTAACCTTATTTTCTGCTCCTTTCCTTTCCTTTATTTGGTTGTACTGGTTTCTTCTTTTAGTCCTACACTGGCTTCAGGGTCGATAAAACTTCATACTAGTCTATTTGGTACTTCATTGAAAAATTCAACCATGACAAGCGAAGACTACCAGAAGGCTGTTTTAAAGGCCAAGGAACATATCCTTGCTGGGGACATTTTCCAAATTGTTCTTAGTCAACGTTTTGAAAGACGAACCTTTGCAGATCCATTTGAAGTATACAGAGCAC</genome_strand>
        <mrna_strand>GTTACGTAGAGAAAAAGAAGCTACCTTTCTCAAATGCTCCAATGGATGATAGGAACCTTCCTGATCTTCATCTAGGCCTTTATGATGATGTAATTGTGTTTGATCATGTGGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCATTTGTCATACATTGGGTGCGGTTAGATCGATTTGCTTCAGTAGAGGAGGCCTACAATGATGGTACAACCAGATTAGAAGCATTGTTGTGTAGAGTACATGATATTGTACC.............................................................................................TCCTACGCTGGCTTCAGGGTCGATAAAACTTCATACTAGCCTATTTGGTACTTCATTGAAAAAGTCAAATATGACAAGCGAAGACTACCAGAGGGCTGTTTTAAAGGCCAAGGAACATATCCTTGCTGGGGACATTTTCCAAATTGTTCTTAGCCAACGTTTTGAAAGACGAACATTTGCAGATCCATTTGAAGTATACAGAGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701552" ref_strand="+" ref_description="SGN-E701552 [FA16BB12]">
      <seq>cttcatctaggactttatgatgatgtaattgtgtttgatcatgtggaaaagaaagcatttgtcatacattgggtgcggttagatcgctttgcttcagtagaggaggcctacaatgatggtacaaccagattagaagcattgttgtctagagtacatgatattgtacctcctacactggcttcagggtcaataaaacttcatactagtctatttggtacttcattgaaaaattcaaccatgacaagcgaagactaccagaaggctgttttaaaggccaaggaacatatccttgctggggacattttccaaattgttcttagtcaacgttttgaaagacgaacctttgcagatccatttgaagtatacagagcactaagaatcgtaaatccaagtccttatatgacttatctacaggctcgggggtgtatacttgttgcttctagtcctgaaattcttactcgagtgaagaagaaaacagttaccaatcggcccctagcagggactattagaagaggtaagacacttgaggaagattatatgctggaaaatcaacttttgcacgacgagaaacagtgtgcagagcatataatgctggttgacttgggaagaaatgatgttggaaaggtctctaagcctggttcggtgaaagttgagaaactaatgaacattgaacggtattcccatgtcatgcacatcagctctacggttactggagagctacttgaccatttgagtagctgggatgctctgcgtgcagccctggctgttggaaccgttagtggagcgcctaaggtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68533" stop="71900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68833" g_stop="68883" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68884" i_stop="69554" i_length="671">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.625" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69555" g_stop="69670" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="167" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69671" i_stop="69763" i_length="93">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.885" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69764" g_stop="70010" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="414" r_length="247" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70011" i_stop="70088" i_length="78">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.612" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70089" g_stop="70145" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="471" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70146" i_stop="70278" i_length="133">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70279" g_stop="70431" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="624" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70432" i_stop="71152" i_length="721">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71153" g_stop="71233" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="705" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71234" i_stop="71511" i_length="278">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71512" g_stop="71598" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="792" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="71599" i_stop="71879" i_length="281">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="71880" g_stop="71884" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="793" r_stop="797" r_length="5" r_score="0.400"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E701552" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68833" e_stop="68883"/>
          <exon e_start="69555" e_stop="69670"/>
          <exon e_start="69764" e_stop="70010"/>
          <exon e_start="70089" e_stop="70145"/>
          <exon e_start="70279" e_stop="70431"/>
          <exon e_start="71153" e_stop="71233"/>
          <exon e_start="71512" e_stop="71598"/>
          <exon e_start="71880" e_stop="71884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATCTAGGACTTTATGATGATGTAATTGTGTTTGATCATGTGGAAAAGGTAGTTTAATTTTCTGTACCCAACAAACCTTCAATTTATTTTGTTTTCCAGATTTATATTAACCTATTTTTTTCCTATGGCCCATCTGGTTCATGAACATATGCTTTAGCTCTCAATGAAGTGCTTCAATATAAGCACTTCGATTTCACTTTTTGTACTAGGATAAATTTCTTCAATTTGTCGTGCATATTTGCCATTCATTATGGTGTTCTCTTTATTTTTCATTGAATTTCTTGGGTTTGAATATGTGGAATTGAGTAGTTAGTATCCCACATCGATGGTGATTGTGGCAATTTTTCTTCATATATGTTCTTTGACAATCCTCGTTCGATGAGCTATCTTTTGAAGTTGAGTTATGTCCTAGATCCATTTCTAAACATGCATGGTATGAGAGCTAGATCATTTACATTCTTGGTTTACCCAATGTTGGATACCCATATTATGTTGTCCGTGCAGGGGATGTGAAGTGTCTCACATTGGTAGAGGAAATGGGTTATTGTTTGGCCATGCTCACCCTTTGAGCTAGCTTTAGAATTGAATTAGCTTTTAGTGTTGGCTTATGCATAAGGTGCATTTCTTTACATGATTACTTTCATGATCAACTTCTAGTAGTAAGGTAATTATTTTTCAAGGTATTATGGTCCATTACTCAAATTTCTGCTTGATACCAGAAAGCATTTGTCATACATTGGGTGCGGTTAGATCGCTTTGCTTCAGTAGAGGAGGCCTACAATGATGGTACAACCAGATTAGAAGCTTTGTTGTCTAGAGTACATGATATTGTACCGTAAGTTAATTTCACTTCCTCTTCCAATAATTCTAACCTTATTTTCTGCTCCTTTCCTTTCCTTTATTTGGTTGTACTGGTTTCTTCTTTTAGTCCTACACTGGCTTCAGGGTCGATAAAACTTCATACTAGTCTATTTGGTACTTCATTGAAAAATTCAACCATGACAAGCGAAGACTACCAGAAGGCTGTTTTAAAGGCCAAGGAACATATCCTTGCTGGGGACATTTTCCAAATTGTTCTTAGTCAACGTTTTGAAAGACGAACCTTTGCAGATCCATTTGAAGTATACAGAGCACTAAGAATCGTAAATCCAAGTCCTTATATGACTTATCTACAGGTATGCCTGTTTTCCTTGAAACTTTGACTCTTCAAATTCTATTTCCCTGGTTTCTCACGAAGGATATGTTCTGATCAGGCTCGGGGGTGTATACTTGTTGCTTCTAGTCCTGAAATTCTTACTCGAGTGAAGAAGGTAAATCAACTGATGTTCTCTATTCTAATTTGCAGATTGCATGTCGATTTCACCCCGAATTCCATCTGTCATCGTGTCTACCATTAACAACTTTGCTAATGATCTAAAACCGTTCGTTTTTTTTTTGGTCCAGAAAACAGTTACCAATCGGCCCCTAGCAGGGACTATTAGAAGAGGTAAGACACTTGAGGAAGATTATATGCTGGAAAATCAACTTTTGCACGACGAGAAACAGTGTGCAGAGCATATAATGCTGGTTGACTTGGGAAGAAATGATGTTGGAAAGGTGAACACTCCTAATTTCCCTTTGTTTTTATTTGTCTCTATAGGTTAATGGAATTTGTGCATTATTAGAGGTGTATTATATAATCTTCTATCTGCCAAGATTCGATAAATCTACATCTGGAGTCTGGACTAGTAATTGGACAACTGAAAATAATTGCTCATCTTGTTGATTGTAATTCTCATCGTCACATTGCTTATTGCTACTTTTGACATCATCCTACTTCCTCTGGACTACATTGATCCTTTAATTCTATATGTTTAGGTTGTCAATATTTAGGTAGCATCTCATCTCTGTCATGTAATGATCTTGTTCTTGTTTTGGACTAAGTTGTGTAGAGTAAAGTTCTTCACTATGGTGCCGCTCCTATGTCGACACAACGTGGGTGTGGCATATGTACCGGATCAGGTCAATCGATTTTAGGTAGTTTGACCATAAGTTGATAGAGAAATTCAAGATAAATACAAAGATTTCAGAAATCAAAACAAAAGATAGGGTAAAAGCATAAATAGGCATGTGCATAATATATTGTACAGTGTTTATGCAATTCATCCTCCATTTATGCGTTGGCATTTTTGCTCAATCAGCTTCTATTATTTGAATTCCTAGGTACCTACTGAATTTTATTTGTTAATTAACTTCTCACGTTAGAGTCCTTGTAAGCATTTTATTGAAGCCGTCTTTCAGTACAATAATCTTTGACTAACTTCGATTCTTAATTCAGGTCTCTAAGCCTGGTTCGGTGAAAGTTGAGAAACTAATGAACATTGAACGGTATTCCCATGTCATGCACATCAGCTCTACGGTGAGTTCTTGTCATATGAATTGTATTTAATTATAGCTATTCTTTTACGTTAATTGGAGTCTTACATGTTACTTGCATAAGTTATGTTACCTAAGTGCAACAAAGTTTGCTTTCTGAGAGAAATGTCAGTTACAAATAACATTTGTTCTTATACATTACGTTACTTCCTTTCTGACATATTTCAGTAATTAGAGAATCATCACTAAGACTCTTGGATGTTGTGAAATATAATGATTTGTCTGGCTTGTTACAAGGTTTTGTTTTGTCAAAATTTGCAGGTTACTGGAGAGCTACTTGACCATTTGAGTAGCTGGGATGCTCTGCGTGCAGCCCTGCCTGTTGGAACCGTTAGTGGAGCGCCTAAGGTTCTACAATCATTTTGTACTTTTGGTATATTAATTATTTGAAAAGGCAGTGTCGGTTATTTGAGTTCTGGGTGCTTTCTGCTGCCTTAATGTCTTAAGTTATGGGAAGTAGCCAAACTGATGCCCCCAGTCTTTGGAAGTATGGTCTTTCCACTTCGCTGAATTTGATCAGTTGGTGGAGATATTGATAATCAATTCTTCTATCCTGAACAGAAAGTTTATGCATATCGTCTCTTTTTCATCAAGTGTTAACAAGTGAACTATTTATTATTTTCTGGAAGTGAAG</genome_strand>
        <mrna_strand>CTTCATCTAGGACTTTATGATGATGTAATTGTGTTTGATCATGTGGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCATTTGTCATACATTGGGTGCGGTTAGATCGCTTTGCTTCAGTAGAGGAGGCCTACAATGATGGTACAACCAGATTAGAAGCATTGTTGTCTAGAGTACATGATATTGTACC.............................................................................................TCCTACACTGGCTTCAGGGTCAATAAAACTTCATACTAGTCTATTTGGTACTTCATTGAAAAATTCAACCATGACAAGCGAAGACTACCAGAAGGCTGTTTTAAAGGCCAAGGAACATATCCTTGCTGGGGACATTTTCCAAATTGTTCTTAGTCAACGTTTTGAAAGACGAACCTTTGCAGATCCATTTGAAGTATACAGAGCACTAAGAATCGTAAATCCAAGTCCTTATATGACTTATCTACAG..............................................................................GCTCGGGGGTGTATACTTGTTGCTTCTAGTCCTGAAATTCTTACTCGAGTGAAGAAG.....................................................................................................................................AAAACAGTTACCAATCGGCCCCTAGCAGGGACTATTAGAAGAGGTAAGACACTTGAGGAAGATTATATGCTGGAAAATCAACTTTTGCACGACGAGAAACAGTGTGCAGAGCATATAATGCTGGTTGACTTGGGAAGAAATGATGTTGGAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTAAGCCTGGTTCGGTGAAAGTTGAGAAACTAATGAACATTGAACGGTATTCCCATGTCATGCACATCAGCTCTACG......................................................................................................................................................................................................................................................................................GTTACTGGAGAGCTACTTGACCATTTGAGTAGCTGGGATGCTCTGCGTGCAGCCCTGGCTGTTGGAACCGTTAGTGGAGCGCCTAAG.........................................................................................................................................................................................................................................................................................GTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391841" ref_strand="+" ref_description="SGN-E391841 [TUS-24-P15]">
      <seq>gaagattatatgctggaaaatcaacttttgcacgacgagaaacagtgtgcagagcatataatgctggttgacttgggaagaaatgatgttggaaaggtctctaagcctggttcggtgaaagttgagaaactaatgaacattgaacggtattcccatgtcatgcacatcagctctacggttactggagagctacttgaccatttgagtagctgggatgctctgcgtgcagccctgcctgttggaaccgttagtggagcgcctaaggtaaaagccatggagctaattgatcaactggaagtcacaaggcgtggaccatacagcggtggatttggaggaatttcctttaccggagaaatggacattgccttagctttgagaatcatagtatttccaactggaacgcgttacgacactatgtactcgtacaaggatgtcgacaagcgacgagattggattgcttatctccaagctggagcaggtatagtggctgatagtgacccagctgatgagcaaaatgaatgcgaaaataaagctgcagctcttgtccgtgccattgatcttgctgagtcttcatttgttgacaaataatagatgccgtcctagtgtcagattttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70036" stop="72730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70336" g_stop="70431" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70432" i_stop="71152" i_length="721">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71153" g_stop="71233" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="177" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71234" i_stop="71511" i_length="278">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71512" g_stop="71598" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="264" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71599" i_stop="72076" i_length="478">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72077" g_stop="72430" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="618" r_length="354" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E391841" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70336" e_stop="70431"/>
          <exon e_start="71153" e_stop="71233"/>
          <exon e_start="71512" e_stop="71598"/>
          <exon e_start="72077" e_stop="72430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATTATATGCTGGAAAATCAACTTTTGCACGACGAGAAACAGTGTGCAGAGCATATAATGCTGGTTGACTTGGGAAGAAATGATGTTGGAAAGGTGAACACTCCTAATTTCCCTTTGTTTTTATTTGTCTCTATAGGTTAATGGAATTTGTGCATTATTAGAGGTGTATTATATAATCTTCTATCTGCCAAGATTCGATAAATCTACATCTGGAGTCTGGACTAGTAATTGGACAACTGAAAATAATTGCTCATCTTGTTGATTGTAATTCTCATCGTCACATTGCTTATTGCTACTTTTGACATCATCCTACTTCCTCTGGACTACATTGATCCTTTAATTCTATATGTTTAGGTTGTCAATATTTAGGTAGCATCTCATCTCTGTCATGTAATGATCTTGTTCTTGTTTTGGACTAAGTTGTGTAGAGTAAAGTTCTTCACTATGGTGCCGCTCCTATGTCGACACAACGTGGGTGTGGCATATGTACCGGATCAGGTCAATCGATTTTAGGTAGTTTGACCATAAGTTGATAGAGAAATTCAAGATAAATACAAAGATTTCAGAAATCAAAACAAAAGATAGGGTAAAAGCATAAATAGGCATGTGCATAATATATTGTACAGTGTTTATGCAATTCATCCTCCATTTATGCGTTGGCATTTTTGCTCAATCAGCTTCTATTATTTGAATTCCTAGGTACCTACTGAATTTTATTTGTTAATTAACTTCTCACGTTAGAGTCCTTGTAAGCATTTTATTGAAGCCGTCTTTCAGTACAATAATCTTTGACTAACTTCGATTCTTAATTCAGGTCTCTAAGCCTGGTTCGGTGAAAGTTGAGAAACTAATGAACATTGAACGGTATTCCCATGTCATGCACATCAGCTCTACGGTGAGTTCTTGTCATATGAATTGTATTTAATTATAGCTATTCTTTTACGTTAATTGGAGTCTTACATGTTACTTGCATAAGTTATGTTACCTAAGTGCAACAAAGTTTGCTTTCTGAGAGAAATGTCAGTTACAAATAACATTTGTTCTTATACATTACGTTACTTCCTTTCTGACATATTTCAGTAATTAGAGAATCATCACTAAGACTCTTGGATGTTGTGAAATATAATGATTTGTCTGGCTTGTTACAAGGTTTTGTTTTGTCAAAATTTGCAGGTTACTGGAGAGCTACTTGACCATTTGAGTAGCTGGGATGCTCTGCGTGCAGCCCTGCCTGTTGGAACCGTTAGTGGAGCGCCTAAGGTTCTACAATCATTTTGTACTTTTGGTATATTAATTATTTGAAAAGGCAGTGTCGGTTATTTGAGTTCTGGGTGCTTTCTGCTGCCTTAATGTCTTAAGTTATGGGAAGTAGCCAAACTGATGCCCCCAGTCTTTGGAAGTATGGTCTTTCCACTTCGCTGAATTTGATCAGTTGGTGGAGATATTGATAATCAATTCTTCTATCCTGAACAGAAAGTTTATGCATATCGTCTCTTTTTCATCAAGTGTTAACAAGTGAACTATTTATTATTTTCTGGAAGTGAAGAGGGGTGAAGGGGGCTGAGGGCTGAAGCTAATATTGGTACGGTTATGTGTTTAAGGTCAATCCATCTGGAACTTGTAAGAACTATTGATATGCTTTGAGGTGTTTCGTGAAGGAATTTATAGCTGTATAGTTTTAATTTTTTGTATGTTCACGAAGGGGGCGTAAATAATTCATGCCTCTTGCTTGGTATAGGTAAAAGCCATGGAGCTAATTGATCAACTGGAAGTCACAAGGCGTGGACCATACAGCGGTGGATTTGGAGGAATTTCCTTTACCGGAGAAATGGACATTGCCTTAGCTTTGAGAACCATAGTATTTCCAACTGGAACGCGTTACGACACTATGTACTCGTACAAGGATGTCGACAAGCGACGAGATTGGATTGCTTATCTCCAAGCTGGAGCAGGTATAGTGGCTGATAGTGACCCAGCTGATGAGCAAAATGAATGCGAAAATAAAGCTGCAGCTCTTGTCCGTGCCATTGATCTTGCTGAGTCTTCATTTGTTGACAAATAATAGATGCCGTCCTAGTGTCAGATTTTGTTT</genome_strand>
        <mrna_strand>GAAGATTATATGCTGGAAAATCAACTTTTGCACGACGAGAAACAGTGTGCAGAGCATATAATGCTGGTTGACTTGGGAAGAAATGATGTTGGAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTAAGCCTGGTTCGGTGAAAGTTGAGAAACTAATGAACATTGAACGGTATTCCCATGTCATGCACATCAGCTCTACG......................................................................................................................................................................................................................................................................................GTTACTGGAGAGCTACTTGACCATTTGAGTAGCTGGGATGCTCTGCGTGCAGCCCTGCCTGTTGGAACCGTTAGTGGAGCGCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAGCCATGGAGCTAATTGATCAACTGGAAGTCACAAGGCGTGGACCATACAGCGGTGGATTTGGAGGAATTTCCTTTACCGGAGAAATGGACATTGCCTTAGCTTTGAGAATCATAGTATTTCCAACTGGAACGCGTTACGACACTATGTACTCGTACAAGGATGTCGACAAGCGACGAGATTGGATTGCTTATCTCCAAGCTGGAGCAGGTATAGTGGCTGATAGTGACCCAGCTGATGAGCAAAATGAATGCGAAAATAAAGCTGCAGCTCTTGTCCGTGCCATTGATCTTGCTGAGTCTTCATTTGTTGACAAATAATAGATGCCGTCCTAGTGTCAGATTTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247177" ref_strand="+" ref_description="SGN-E247177 [cLEF-46-D18]">
      <seq>aagattatatgctggaaaatcaacttttgcacgacgagaaacagtgtgcagagcatataatgctggttgacttgggaagaaatgatgttggaaaggtctctaagcctggttcggtgaaagttgagaaactaatgaacattgaacggtattcccatgtcatgcacatcagctctacggttactggagagctacttgaccatttgagtagctgggatgctctgcgtgcagccctgcctgttggaaccgttagtggagcgcctaaggtaaaagccatggagctaattgatcaactggaagtcacaaggcgtggaccatacagcggtggatttggaggaatttcctttaccggagaaatggacattgccttagctttgagaatcatagtatttccaactggaacgcgttacgacactatgtactcgtacaaggatgtcgacaagcgacgagattggattgcttatctccaagctggagcaggtatagtggctgatagtgacccagctgatgagcaaaatgaatgcgaaaataaagctgcagctcttgtccgtgccattgatcttgctgagtcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70037" stop="72684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70337" g_stop="70431" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70432" i_stop="71152" i_length="721">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71153" g_stop="71233" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="176" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71234" i_stop="71511" i_length="278">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71512" g_stop="71598" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="263" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71599" i_stop="72076" i_length="478">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72077" g_stop="72384" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="571" r_length="308" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E247177" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70337" e_stop="70431"/>
          <exon e_start="71153" e_stop="71233"/>
          <exon e_start="71512" e_stop="71598"/>
          <exon e_start="72077" e_stop="72384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTATATGCTGGAAAATCAACTTTTGCACGACGAGAAACAGTGTGCAGAGCATATAATGCTGGTTGACTTGGGAAGAAATGATGTTGGAAAGGTGAACACTCCTAATTTCCCTTTGTTTTTATTTGTCTCTATAGGTTAATGGAATTTGTGCATTATTAGAGGTGTATTATATAATCTTCTATCTGCCAAGATTCGATAAATCTACATCTGGAGTCTGGACTAGTAATTGGACAACTGAAAATAATTGCTCATCTTGTTGATTGTAATTCTCATCGTCACATTGCTTATTGCTACTTTTGACATCATCCTACTTCCTCTGGACTACATTGATCCTTTAATTCTATATGTTTAGGTTGTCAATATTTAGGTAGCATCTCATCTCTGTCATGTAATGATCTTGTTCTTGTTTTGGACTAAGTTGTGTAGAGTAAAGTTCTTCACTATGGTGCCGCTCCTATGTCGACACAACGTGGGTGTGGCATATGTACCGGATCAGGTCAATCGATTTTAGGTAGTTTGACCATAAGTTGATAGAGAAATTCAAGATAAATACAAAGATTTCAGAAATCAAAACAAAAGATAGGGTAAAAGCATAAATAGGCATGTGCATAATATATTGTACAGTGTTTATGCAATTCATCCTCCATTTATGCGTTGGCATTTTTGCTCAATCAGCTTCTATTATTTGAATTCCTAGGTACCTACTGAATTTTATTTGTTAATTAACTTCTCACGTTAGAGTCCTTGTAAGCATTTTATTGAAGCCGTCTTTCAGTACAATAATCTTTGACTAACTTCGATTCTTAATTCAGGTCTCTAAGCCTGGTTCGGTGAAAGTTGAGAAACTAATGAACATTGAACGGTATTCCCATGTCATGCACATCAGCTCTACGGTGAGTTCTTGTCATATGAATTGTATTTAATTATAGCTATTCTTTTACGTTAATTGGAGTCTTACATGTTACTTGCATAAGTTATGTTACCTAAGTGCAACAAAGTTTGCTTTCTGAGAGAAATGTCAGTTACAAATAACATTTGTTCTTATACATTACGTTACTTCCTTTCTGACATATTTCAGTAATTAGAGAATCATCACTAAGACTCTTGGATGTTGTGAAATATAATGATTTGTCTGGCTTGTTACAAGGTTTTGTTTTGTCAAAATTTGCAGGTTACTGGAGAGCTACTTGACCATTTGAGTAGCTGGGATGCTCTGCGTGCAGCCCTGCCTGTTGGAACCGTTAGTGGAGCGCCTAAGGTTCTACAATCATTTTGTACTTTTGGTATATTAATTATTTGAAAAGGCAGTGTCGGTTATTTGAGTTCTGGGTGCTTTCTGCTGCCTTAATGTCTTAAGTTATGGGAAGTAGCCAAACTGATGCCCCCAGTCTTTGGAAGTATGGTCTTTCCACTTCGCTGAATTTGATCAGTTGGTGGAGATATTGATAATCAATTCTTCTATCCTGAACAGAAAGTTTATGCATATCGTCTCTTTTTCATCAAGTGTTAACAAGTGAACTATTTATTATTTTCTGGAAGTGAAGAGGGGTGAAGGGGGCTGAGGGCTGAAGCTAATATTGGTACGGTTATGTGTTTAAGGTCAATCCATCTGGAACTTGTAAGAACTATTGATATGCTTTGAGGTGTTTCGTGAAGGAATTTATAGCTGTATAGTTTTAATTTTTTGTATGTTCACGAAGGGGGCGTAAATAATTCATGCCTCTTGCTTGGTATAGGTAAAAGCCATGGAGCTAATTGATCAACTGGAAGTCACAAGGCGTGGACCATACAGCGGTGGATTTGGAGGAATTTCCTTTACCGGAGAAATGGACATTGCCTTAGCTTTGAGAACCATAGTATTTCCAACTGGAACGCGTTACGACACTATGTACTCGTACAAGGATGTCGACAAGCGACGAGATTGGATTGCTTATCTCCAAGCTGGAGCAGGTATAGTGGCTGATAGTGACCCAGCTGATGAGCAAAATGAATGCGAAAATAAAGCTGCAGCTCTTGTCCGTGCCATTGATCTTGCTGAGTCTTC</genome_strand>
        <mrna_strand>AAGATTATATGCTGGAAAATCAACTTTTGCACGACGAGAAACAGTGTGCAGAGCATATAATGCTGGTTGACTTGGGAAGAAATGATGTTGGAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTAAGCCTGGTTCGGTGAAAGTTGAGAAACTAATGAACATTGAACGGTATTCCCATGTCATGCACATCAGCTCTACG......................................................................................................................................................................................................................................................................................GTTACTGGAGAGCTACTTGACCATTTGAGTAGCTGGGATGCTCTGCGTGCAGCCCTGCCTGTTGGAACCGTTAGTGGAGCGCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAGCCATGGAGCTAATTGATCAACTGGAAGTCACAAGGCGTGGACCATACAGCGGTGGATTTGGAGGAATTTCCTTTACCGGAGAAATGGACATTGCCTTAGCTTTGAGAATCATAGTATTTCCAACTGGAACGCGTTACGACACTATGTACTCGTACAAGGATGTCGACAAGCGACGAGATTGGATTGCTTATCTCCAAGCTGGAGCAGGTATAGTGGCTGATAGTGACCCAGCTGATGAGCAAAATGAATGCGAAAATAAAGCTGCAGCTCTTGTCCGTGCCATTGATCTTGCTGAGTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411731" ref_strand="-" ref_description="SGN-E411731 [STM-15-M5]">
      <seq>cagagcatataatgctggttgacttgggaagaaatgatgttggaaaggtctttaagcctggttcggtgaaagttgagaaactaatgaacattgaacggtattcccatgtcatgcacatcagctccacggttactggagagctactggaccatttgagtagctgggatgctctgcgtgcagccctgcctgttggaaccgttagtggagcgcccaaggtgaaagccatggagctaattgatcagctggaagtcacaaggcgtggaccttacagcggtggatttggaggcatttcctttaccggagaaatggacattgccttagctttgagaaccattgtatttccaactggaacgcgttatgacactatgtactcgtacaaggatgtcgataagcgacgagattggattgcttatctccaagctggagcaggtatagtggctgatagtgaccccgctgatgagcaaaatgaatgtgaaaacaaagctgcagctcttgtccgtgccattgatcttgcagagtcctcatttgttgacaaataatagatgcagtcctagtgtcagattttgtttcgtcaatttttttgtttcttgatgggtgtagagaagtttgtttttgatctgaatagtcagttatgttgggaagtgactgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70085" stop="72812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70385" g_stop="70431" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70432" i_stop="71152" i_length="721">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71153" g_stop="71233" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="128" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71234" i_stop="71511" i_length="278">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71512" g_stop="71598" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="215" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71599" i_stop="72076" i_length="478">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72077" g_stop="72522" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="662" r_length="447" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E411731" ref_strand="-">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E411731" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="70385" e_stop="70431"/>
          <exon e_start="71153" e_stop="71233"/>
          <exon e_start="71512" e_stop="71598"/>
          <exon e_start="72077" e_stop="72522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGCATATAATGCTGGTTGACTTGGGAAGAAATGATGTTGGAAAGGTGAACACTCCTAATTTCCCTTTGTTTTTATTTGTCTCTATAGGTTAATGGAATTTGTGCATTATTAGAGGTGTATTATATAATCTTCTATCTGCCAAGATTCGATAAATCTACATCTGGAGTCTGGACTAGTAATTGGACAACTGAAAATAATTGCTCATCTTGTTGATTGTAATTCTCATCGTCACATTGCTTATTGCTACTTTTGACATCATCCTACTTCCTCTGGACTACATTGATCCTTTAATTCTATATGTTTAGGTTGTCAATATTTAGGTAGCATCTCATCTCTGTCATGTAATGATCTTGTTCTTGTTTTGGACTAAGTTGTGTAGAGTAAAGTTCTTCACTATGGTGCCGCTCCTATGTCGACACAACGTGGGTGTGGCATATGTACCGGATCAGGTCAATCGATTTTAGGTAGTTTGACCATAAGTTGATAGAGAAATTCAAGATAAATACAAAGATTTCAGAAATCAAAACAAAAGATAGGGTAAAAGCATAAATAGGCATGTGCATAATATATTGTACAGTGTTTATGCAATTCATCCTCCATTTATGCGTTGGCATTTTTGCTCAATCAGCTTCTATTATTTGAATTCCTAGGTACCTACTGAATTTTATTTGTTAATTAACTTCTCACGTTAGAGTCCTTGTAAGCATTTTATTGAAGCCGTCTTTCAGTACAATAATCTTTGACTAACTTCGATTCTTAATTCAGGTCTCTAAGCCTGGTTCGGTGAAAGTTGAGAAACTAATGAACATTGAACGGTATTCCCATGTCATGCACATCAGCTCTACGGTGAGTTCTTGTCATATGAATTGTATTTAATTATAGCTATTCTTTTACGTTAATTGGAGTCTTACATGTTACTTGCATAAGTTATGTTACCTAAGTGCAACAAAGTTTGCTTTCTGAGAGAAATGTCAGTTACAAATAACATTTGTTCTTATACATTACGTTACTTCCTTTCTGACATATTTCAGTAATTAGAGAATCATCACTAAGACTCTTGGATGTTGTGAAATATAATGATTTGTCTGGCTTGTTACAAGGTTTTGTTTTGTCAAAATTTGCAGGTTACTGGAGAGCTACTTGACCATTTGAGTAGCTGGGATGCTCTGCGTGCAGCCCTGCCTGTTGGAACCGTTAGTGGAGCGCCTAAGGTTCTACAATCATTTTGTACTTTTGGTATATTAATTATTTGAAAAGGCAGTGTCGGTTATTTGAGTTCTGGGTGCTTTCTGCTGCCTTAATGTCTTAAGTTATGGGAAGTAGCCAAACTGATGCCCCCAGTCTTTGGAAGTATGGTCTTTCCACTTCGCTGAATTTGATCAGTTGGTGGAGATATTGATAATCAATTCTTCTATCCTGAACAGAAAGTTTATGCATATCGTCTCTTTTTCATCAAGTGTTAACAAGTGAACTATTTATTATTTTCTGGAAGTGAAGAGGGGTGAAGGGGGCTGAGGGCTGAAGCTAATATTGGTACGGTTATGTGTTTAAGGTCAATCCATCTGGAACTTGTAAGAACTATTGATATGCTTTGAGGTGTTTCGTGAAGGAATTTATAGCTGTATAGTTTTAATTTTTTGTATGTTCACGAAGGGGGCGTAAATAATTCATGCCTCTTGCTTGGTATAGGTAAAAGCCATGGAGCTAATTGATCAACTGGAAGTCACAAGGCGTGGACCATACAGCGGTGGATTTGGAGGAATTTCCTTTACCGGAGAAATGGACATTGCCTTAGCTTTGAGAACCATAGTATTTCCAACTGGAACGCGTTACGACACTATGTACTCGTACAAGGATGTCGACAAGCGACGAGATTGGATTGCTTATCTCCAAGCTGGAGCAGGTATAGTGGCTGATAGTGACCCAGCTGATGAGCAAAATGAATGCGAAAATAAAGCTGCAGCTCTTGTCCGTGCCATTGATCTTGCTGAGTCTTCATTTGTTGACAAATAATAGATGCCGTCCTAGTGTCAGATTTTGTTTCGTCGATTATTTCGTTTCTTGTTGGATGTAGA-AAGTTCGTTTTCAATCTGAATAGTCCGTTATGTTGGGAGGTGACTGAAAATCCCCATCCA</genome_strand>
        <mrna_strand>CAGAGCATATAATGCTGGTTGACTTGGGAAGAAATGATGTTGGAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTAAGCCTGGTTCGGTGAAAGTTGAGAAACTAATGAACATTGAACGGTATTCCCATGTCATGCACATCAGCTCCACG......................................................................................................................................................................................................................................................................................GTTACTGGAGAGCTACTGGACCATTTGAGTAGCTGGGATGCTCTGCGTGCAGCCCTGCCTGTTGGAACCGTTAGTGGAGCGCCCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGCCATGGAGCTAATTGATCAGCTGGAAGTCACAAGGCGTGGACCTTACAGCGGTGGATTTGGAGGCATTTCCTTTACCGGAGAAATGGACATTGCCTTAGCTTTGAGAACCATTGTATTTCCAACTGGAACGCGTTATGACACTATGTACTCGTACAAGGATGTCGATAAGCGACGAGATTGGATTGCTTATCTCCAAGCTGGAGCAGGTATAGTGGCTGATAGTGACCCCGCTGATGAGCAAAATGAATGTGAAAACAAAGCTGCAGCTCTTGTCCGTGCCATTGATCTTGCAGAGTCCTCATTTGTTGACAAATAATAGATGCAGTCCTAGTGTCAGATTTTGTTTCGTCAATTTTTTTGTTTCTTGATGGGTGTAGAGAAGTTTGTTTTTGATCTGAATAGTCAGTTATGTTGGGAAGTGACTGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263180" ref_strand="+" ref_description="SGN-E263180 [cLEG-62-O10]">
      <seq>gaacgcgttacgacactatgtactcgtacaaggatgtcgacaagcgacgagattggattgcttatctccaagctggagcaggtatagtggctgatagtgacccagctgatgagcaaaatgaatgcgaaaataaagctgcagctcttgtccgtgccattgatcttgctgagtcttcatttgttgacaaataatagatgccgtcctagtgtcagattttgtttcgtcgattatttcgtttcttgttggatgtagaaagttcgttttcaatctgaatagtccgttatgttgggaggtgactgaaaatccccatccacacacacactcacaatgtcatagtcattgcgtatgttggcttcatcaattttagcagggtgtcacaaagagcccagaattggcattgtgacttatagttctctggctgtcaattgatttcagtatttggcttttttcgggttctgtggttgtaccctanggctatcagaaacctaacctctctacttttgtaggataatattagtttgcatcctgccctctccagactcaacttatggcattgtactctaaattatgatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="71910" stop="73085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72210" g_stop="72785" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E263180" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72210" e_stop="72785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGCGTTACGACACTATGTACTCGTACAAGGATGTCGACAAGCGACGAGATTGGATTGCTTATCTCCAAGCTGGAGCAGGTATAGTGGCTGATAGTGACCCAGCTGATGAGCAAAATGAATGCGAAAATAAAGCTGCAGCTCTTGTCCGTGCCATTGATCTTGCTGAGTCTTCATTTGTTGACAAATAATAGATGCCGTCCTAGTGTCAGATTTTGTTTCGTCGATTATTTCGTTTCTTGTTGGATGTAGAAAGTTCGTTTTCAATCTGAATAGTCCGTTATGTTGGGAGGTGACTGAAAATCCCCATCCACACACACACTCACAATGTCATAGTCATTGCGTATGTTGGCTTCATCAATTTTAGCAGGGTGTCACAAAGAGCCCAGAATTGGCATTGTGACTTATAGTTCTCTGGCTGTCAATTGATTTCAGTATTTGGCTTTTTTCGGGTTCTGTGGTTGTACCCTAGGGCTATCAGAAACCTAACCTCTCTACTTTTGTAGGATAATATTAGTTTGCATCCTGCCCTCTCCAGACTCAACTTATGGCATTGTACTCTAAATTATGATCTTG</genome_strand>
        <mrna_strand>GAACGCGTTACGACACTATGTACTCGTACAAGGATGTCGACAAGCGACGAGATTGGATTGCTTATCTCCAAGCTGGAGCAGGTATAGTGGCTGATAGTGACCCAGCTGATGAGCAAAATGAATGCGAAAATAAAGCTGCAGCTCTTGTCCGTGCCATTGATCTTGCTGAGTCTTCATTTGTTGACAAATAATAGATGCCGTCCTAGTGTCAGATTTTGTTTCGTCGATTATTTCGTTTCTTGTTGGATGTAGAAAGTTCGTTTTCAATCTGAATAGTCCGTTATGTTGGGAGGTGACTGAAAATCCCCATCCACACACACACTCACAATGTCATAGTCATTGCGTATGTTGGCTTCATCAATTTTAGCAGGGTGTCACAAAGAGCCCAGAATTGGCATTGTGACTTATAGTTCTCTGGCTGTCAATTGATTTCAGTATTTGGCTTTTTTCGGGTTCTGTGGTTGTACCCTANGGCTATCAGAAACCTAACCTCTCTACTTTTGTAGGATAATATTAGTTTGCATCCTGCCCTCTCCAGACTCAACTTATGGCATTGTACTCTAAATTATGATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746596" ref_strand="+" ref_description="SGN-E746596 [GI|47104154]">
      <seq>cctcgtgccgcatttacagctctaattcatttgcttcagacgttgatagacagatggcgtctgtccaaactgctttgacatcactcctatgcaagaaagggaacaataatccacaagtaaatgttccaagaagttccttcttgccagggtttgatttgacagggcaagttgcagttacggggagaagggaaacgcgtttcaattctttttcaagcccgagagcaacacttacctttgatcctcccagtactgataataaagagaagacaaagccaaagcacactgttgatcctaatgctcctgatttcctgccccttccaccattcgaacaatgctttccgaaaagctccaaggaatacagtgaagttatgcatgaagaaactggtcatgtactcaaagtcccatttcgacgtattcatctttccggggatgaaccacattttgacacttatgataccagtggtcctcagggtgttaacccgcgtgttggacttcccaagctgcgcacggagtggattaacaggagggagaagttaggaggaccaaggtatactcaaatgttctatgctaagcagggaatcataactgaggaaatggtgtactgtgctgctcgtgaaaagatggatccggaatttgtgaggtcagaagttgctcggggccgtgcaatcatcccttcaaacaagaagcaccctgagttggagccaatgatagtaggaagaaagttcttagtgaaagtcaatgccaacatcgggaactctgctgttgtaagctcgattgaagaagaagttcataagcttcaatgggcaacaatgtggggtgcagatacgatcatggatctctccactggtcgtcacatccacgagactcgtgagtggatcttgcgtaattctgctgtaccagtaggcactgtgccaatttaccaagcactagaaaaagtaaacgggattgctgagaatcttagctgggaagtgtttagagagaccttaattgaacaagctgagcaaggagttgattacttcacaatccatgccggagtccttctcaggtacatcccactgacagcaaaacggatgaccggaattgtttctcgtggaggctcaattcatgcaaagtggtgcttagcttatcacaaggagaatttcgcttatgaacattgggatgacatacttgacatctgtaatcagtacgatatatcgttatcaattggtgatggactgagacctggttcaatttatgatgcaaatgacaccgctcagtttgctgagctcttgactcaaggggagctgactcgccgagcttgggaaaaggatgtacaggttatgaatgaaggacctggacacgtaccaatgcataagattcccgagaacatgcagaaacagctagagtggtgtaatgaagcaccattctacactcttggaccattgacaactgatatagctcccggatatgatcatatcacctcagctatcggtgcagccaatataggagcactcgggactgcacttctgtgttacgtcactccaaaagagcatcttggtcttcctaatcgcgatgacgtgaagacaggtgtaatatcatataagatagctgctcatgcagctgatcttgcaaaaggtcacccgctatctcaagcttgggatgacgcacttagcaaggcaagatttgagttcagatggatggaccaattcgctttgtcattggaccccgttactgcaatgtcctttcacgacgaaactttaccagccgatggggctaaagtggcacatttctgctcgatgtgcggtcctaagttttgctccatgaaaataaccgaagatataaggaagtatgctgaaaatcatggttatggaaatgcagaggaagccattcagcagggcatggatgctatgagtgcagcgtttcaagctgcaaaaaaaaccattagtggggaacaacacggtgaggttggcggtgagatctacttgccagaaaattacatcaactctttgaagagccaaacgaatgtgtaaagatcgaaactggctcacagatttctgaagtgatcacaactccatcggccagtcaaggaggcggtagtaggagcctcattatcaagtattaggtaagtatctagtttggtactgttaaataaactgagacaaacagccttgttcaatgaaactctcctttgttagtaatgagaaaacgcgtattttcttgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76966" stop="82407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77263" g_stop="77302" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77303" i_stop="78827" i_length="1525">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.977" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78828" g_stop="79149" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="361" r_length="322" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79150" i_stop="79393" i_length="244">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79394" g_stop="79521" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="489" r_length="128" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79522" i_stop="80157" i_length="636">
            <donor d_prob="0.509" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80158" g_stop="80984" g_length="827"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="1316" r_length="827" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80985" i_stop="81117" i_length="133">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81118" g_stop="81800" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1317" r_stop="1999" r_length="683" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81801" i_stop="81906" i_length="106">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.413" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81907" g_stop="82106" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="2000" r_stop="2198" r_length="199" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2200" polyA_stop="2214"/>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E746596" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>2200</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77263" e_stop="77302"/>
          <exon e_start="78828" e_stop="79149"/>
          <exon e_start="79394" e_stop="79521"/>
          <exon e_start="80158" e_stop="80984"/>
          <exon e_start="81118" e_stop="81800"/>
          <exon e_start="81907" e_stop="82106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTTCTCATCATTTACAGCTCTAATTCATTTGCTTCAGGTACGTTTATTCTTATTAAATTATTAAAAACCCTTAATTGCGTGTCGAATCTTTCAAAAATATATATATAAAATGTTTACGAGTGTGTATCCATTGGATCTGATACAAATGAGGCAACACAATAACATTTACGTGAAGAGTCTGAGCAACACAGATTAAGCTGATAAATAAAAAGAAAATTTATGCATACCTTTTTCTCTATTAGATCTGTATATTCGTTACTTCCATCGCGAAAATTGCTCGTAGCTAGTAACTTTTTTTTTGTTAATTCTATCATTTCCCGTAAGCATTAGACTTTCGGATATATCAGCAGACATAAGGAGAAGTATTTATCAAAGAGGGAATCAGATGTATCAGAGAGGGGAGGGATGTACTTGAAAGGATATAGGAATTTATTAGCGAGAGGCAATTTGAGAATTTTAGAGATTATGATAAAATAAGATGCGTATTTAGATAATTTTTTCAAAAATAAATGAACACTTTTGGTCAAAAGGTGGTCTAGCGCAACCTCCAAGTAGGAATAGATTCTATGAGTCGTGATACAGTTAAGATAGGGGGCATTTCTAGCATTGAAAATCCTTATTCTTATTGAATAGTTCAAATAACTAGTTGAACGTACCTATTCTTTTCAAGAATAGCCTCCCGTTATCGAAAAGAAGGGCCCGAAGAAGAGATGACTGGCCATCCTTCTCATCCCCCTTAGGAAGTAGAGCGCGGTGAAAGAATTCTGTCGTTCAGTCGAAGGGGGCAGGTTTGCAGCTTCAGGATAACCCGAGCAGTGAAAGAGAAGTAAATCCTGTGTGATAAAATTAAAGTTACCTGGTACTTAGTGGAATAGTCGATAGACATGAATACTCGATTGAGGTGGATCTATGATTTAAATTTGATAGTTTACTTTTGCAATCATAGGTGCAGATGTTAATATTTGTTGAAACTTTAGTGTTTCGTATATTTTGTGTTAATATGATTAGTTCAGTTGAATCCGTTGATTATATATCGCATTTGATACTTGGAATGATCTTTCAAAACACAGCCAATAAATTAGAATGTCATTGTTCCACCATAGTCTTTGTGTTGATGATCAATATATTTTACCTAAAAACTAAAATGTCATCATTCGACGTGACCAAATCTAGTAAATCGATCCCTTACTTTCATTTTATGTTGTGCCATTTGACTTGAAACAGAGTTTAGGATAGGACGATTGTTGAAATACCTGGTTCAAAATATGTCACAACATTTATGTAGCTATATAAAACATGTTTAGGCGAAATGAGAAGTTAAAAGTTAAATTGCAAGTACTTTTTGCTATAACATATGATCTAGCTACAAATTCTGAAGTCTCCGTGGTGGTTCGTTTGCGGTTTTGGTTTGTGATATTCAACTAGTAGCATCACTCACTTTTTGTTGTATCATTTTACAAGCTTGATTTGTTCTAAAAATGTGTTTTTTTCCCTCATTCTGCTTATATATGAATGAACTTATAGTATTAAAATTTGTGAAACAATGGCTTTGTTATCCTTAGACGTTGATTGGAAGATGGCGTCTGTCCAAACTGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATAATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCGGTTACAGGGAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAGAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAGGTCTGCCTAGAATCCATCATGTCTTTGCTCTTCGAGATAACAATATTTGTTGAGGATTCAGTATGTGGAATTTGTAACACTAGTATACTATTGAGACATCTCTTTGATATCTCGAGTGAAATGGCTAAACGTTTAAAATCTCATTGTATAGCTTCACAGAAGAAATGCAGTACACATGCTTTATTTCAAATCTCTAAGCTCATTGGTTCGCGAAATGCTTATTAGTTGAATGTGCAATTTGCAGTGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTGGTAAGCCTGTTATCTATCCTTTTGATGATAACATCCCCTGCGATGAAATTTCTATTTGCGATTCTTGGAAGTTGAATTATCTGATCTTGGATGTTCATCCATATTTCATAAAATTGTTTTCTTTTAAAAAGATCTGGAATATTATTAGCTCTTAAAATGATTCAATATAGGCGATACCAATTAGTTGAATTTAAGTTTTAGTCATGTAGGTTTGTTTACTATAAGTACAATATTCGCTTTAGTCTTTTCAGAGATTATATACTAAGGGGAAATAATCAAATATAGAAACCTCTTAGTGCTATAGAACCTTATTCTTTTAAACATTGGATTGCGACGAATTTAAATGGAGGGACATAGAAGTGAGGATTCCTATAGTACATAACTAATATGGGATTAATGCTTCGTAGTTTATCTTTTGTATTATTAGCTATCAATTTCCACATTTGTTTTTTCTTTCTTTTCATCTGTTCGAGTCTTGCATATATTATTTTCACTCTGCTAAAGACAACCTTTTGAGTCAAAGTTGTTTGTACTTTATGTCAAATGAAACATTAAGCTAAATGTCATGTTGTGATTTTTTACATTATGATTTAGAACATAATCTATTTATATCATAATGATTATGCATCTAAATAGGACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGGAACTCTGCTGTTGTAAGCTCGATTGAAGAAGAAGTTCACAAGCTTCAATGGGCAACAATGTGGGGTGCAGATACGATTATGGATCTCTCTACTGGTCGTCACATCCACGAGACTCGTGAGTGGATCTTGCGTAATTCTGCTGTACCAGTAGGCACTGTGCCAATTTACCAAGCACTAGAAAAAGTAAACGGGATTGCTGAGAATCTTAGTTGGGAAGTGTTTAGGGAGACCTTAATTGAACAAGCTGAGCAAGGAGTTGATTACTTCACAATCCATGCCGGAGTCCTTCTCAGGTACATCCCACTGACAGCAAAACGGATGACCGGAATTGTTTCTCGTGGAGGCTCAATTCATGCAAAGTGGTGCTTAGCTTATCACAAGGAGAATTTCGCTTATGAACATTGGGATGACATACTTGACATCTGTAATCAGTACGATATATCGTTATCAATTGGTGATGGACTGAGACCTGGTTCAATTTATGATGCAAATGACACCGCTCAGTTTGCTGAGCTCTTGACTCAAGGGGAGCTGACTCGCCGAGCTTGGGAAAAGGATGTACAGGTAAATCGCTAATGCTGTCTATTTCTGTTTCAGTAATTAGCTTTTTGTTTGTCTATTTCGTCTCCTGAATATCAGTTTTGAGCTACCGCCTAATTGGTAACGCTTTAACGACAAACATTGTGTTTGATTTCAGGTTATGAATGAAGGACCTGGACATGTACCAATGCATAAGATTCCCGAGAACATGCAGAAACAGCTAGAGTGGTGTAATGAAGCACCATTTTACACTCTTGGACCATTGACAACTGATATAGCTCCCGGATATGATCATATCACCTCAGCTATCGGTGCAGCCAATATAGGAGCACTCGGGACTGCACTTCTGTGTTACGTCACTCCAAAAGAGCATCTTGGTCTGCCTAATCGCGATGACGTGAAGACAGGTGTAATATCATATAAGATAGCTGCTCATGCAGCTGATCTTGCAAAAGGTCACCCGCTATCTCAAGCCTGGGATGATGCACTTAGCAAGGCAAGATTTGAGTTCAGATGGATGGACCAATTCGCTTTATCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCTATGTGCGGGCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGAAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAGAATTACATCAACTCTTTGAAGAGCCAAAGGTGAGTATTACATTCTGCAAGTCCTTTGAAGACACTCGTATAATGCAGAGTCTTTGTGTATTCCGATTAAAGCTCCTTTCACTTACCTTAAAGAATACAATTTCAGGAATGTGTAAAGATCGAAAACTGGCTCACAGATTTCTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAGGTAAGTATCTAGTTTGGTACTGTTAAATAAACTGAGAC-AACAGCCTTGTTCAATGAAACTCTCCTTTGTTAGTAATGAGAAAAACGCGTATTTTCTT</genome_strand>
        <mrna_strand>CCTCGTGCC-GCATTTACAGCTCTAATTCATTTGCTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTGATAGACAGATGGCGTCTGTCCAAACTGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATAATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCAGTTACGGGGAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAGAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAG....................................................................................................................................................................................................................................................TGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATTCATCTTTCCGGGGATGAACCACATTTTGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGTGTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAAAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGGAACTCTGCTGTTGTAAGCTCGATTGAAGAAGAAGTTCATAAGCTTCAATGGGCAACAATGTGGGGTGCAGATACGATCATGGATCTCTCCACTGGTCGTCACATCCACGAGACTCGTGAGTGGATCTTGCGTAATTCTGCTGTACCAGTAGGCACTGTGCCAATTTACCAAGCACTAGAAAAAGTAAACGGGATTGCTGAGAATCTTAGCTGGGAAGTGTTTAGAGAGACCTTAATTGAACAAGCTGAGCAAGGAGTTGATTACTTCACAATCCATGCCGGAGTCCTTCTCAGGTACATCCCACTGACAGCAAAACGGATGACCGGAATTGTTTCTCGTGGAGGCTCAATTCATGCAAAGTGGTGCTTAGCTTATCACAAGGAGAATTTCGCTTATGAACATTGGGATGACATACTTGACATCTGTAATCAGTACGATATATCGTTATCAATTGGTGATGGACTGAGACCTGGTTCAATTTATGATGCAAATGACACCGCTCAGTTTGCTGAGCTCTTGACTCAAGGGGAGCTGACTCGCCGAGCTTGGGAAAAGGATGTACAG.....................................................................................................................................GTTATGAATGAAGGACCTGGACACGTACCAATGCATAAGATTCCCGAGAACATGCAGAAACAGCTAGAGTGGTGTAATGAAGCACCATTCTACACTCTTGGACCATTGACAACTGATATAGCTCCCGGATATGATCATATCACCTCAGCTATCGGTGCAGCCAATATAGGAGCACTCGGGACTGCACTTCTGTGTTACGTCACTCCAAAAGAGCATCTTGGTCTTCCTAATCGCGATGACGTGAAGACAGGTGTAATATCATATAAGATAGCTGCTCATGCAGCTGATCTTGCAAAAGGTCACCCGCTATCTCAAGCTTGGGATGACGCACTTAGCAAGGCAAGATTTGAGTTCAGATGGATGGACCAATTCGCTTTGTCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCGATGTGCGGTCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGGAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAAAATTACATCAACTCTTTGAAGAGCCAAAC..........................................................................................................GAATGTGTAAAGATCG-AAACTGGCTCACAGATTTCTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTATTAGGTAAGTATCTAGTTTGGTACTGTTAAATAAACTGAGACAAACAGCCTTGTTCAATGAAACTCTCCTTTGTTAGTAATGAG-AAAACGCGTATTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366329" ref_strand="+" ref_description="SGN-E366329 [cLPT-1-E9]">
      <seq>tgccgcatttacagctctaattcatttgcttcagacgttgatagacagatggcgtctgtccaaactgctttgacatcactcctatgcaagaaagggaacaataatccacaagtaaatgttccaagaagttccttcttgccagggtttgatttgacagggcaagttgcagttacggggagaagggaaacgcgtttcaattctttttcaagcccgagagcaacacttacctttgatcctcccagtactgataataaagagaagacaaagccaaagcacactgttgatcctaatgctcctgatttcctgccccttccaccattcgaacaatgctttccgaaaagctccaaggaatacagtgaagttatgcatgaagaaactggtcatgtactcaaagtcccatttcgacgtattcatctttccggggatgaaccacattttgacacttatgataccagtggtcctcagggtgttaacccgcgtgttggacttcccaagctgcgcacggagtggattaacaggagggagaagttaggaggacccaagtatactcaaatgttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76974" stop="80533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77269" g_stop="77302" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77303" i_stop="78827" i_length="1525">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78828" g_stop="79149" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="356" r_length="322" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79150" i_stop="79393" i_length="244">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79394" g_stop="79521" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="484" r_length="128" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79522" i_stop="80157" i_length="636">
            <donor d_prob="0.509" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80158" g_stop="80233" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="560" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E366329" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77269" e_stop="77302"/>
          <exon e_start="78828" e_stop="79149"/>
          <exon e_start="79394" e_stop="79521"/>
          <exon e_start="80158" e_stop="80233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATCATTTACAGCTCTAATTCATTTGCTTCAGGTACGTTTATTCTTATTAAATTATTAAAAACCCTTAATTGCGTGTCGAATCTTTCAAAAATATATATATAAAATGTTTACGAGTGTGTATCCATTGGATCTGATACAAATGAGGCAACACAATAACATTTACGTGAAGAGTCTGAGCAACACAGATTAAGCTGATAAATAAAAAGAAAATTTATGCATACCTTTTTCTCTATTAGATCTGTATATTCGTTACTTCCATCGCGAAAATTGCTCGTAGCTAGTAACTTTTTTTTTGTTAATTCTATCATTTCCCGTAAGCATTAGACTTTCGGATATATCAGCAGACATAAGGAGAAGTATTTATCAAAGAGGGAATCAGATGTATCAGAGAGGGGAGGGATGTACTTGAAAGGATATAGGAATTTATTAGCGAGAGGCAATTTGAGAATTTTAGAGATTATGATAAAATAAGATGCGTATTTAGATAATTTTTTCAAAAATAAATGAACACTTTTGGTCAAAAGGTGGTCTAGCGCAACCTCCAAGTAGGAATAGATTCTATGAGTCGTGATACAGTTAAGATAGGGGGCATTTCTAGCATTGAAAATCCTTATTCTTATTGAATAGTTCAAATAACTAGTTGAACGTACCTATTCTTTTCAAGAATAGCCTCCCGTTATCGAAAAGAAGGGCCCGAAGAAGAGATGACTGGCCATCCTTCTCATCCCCCTTAGGAAGTAGAGCGCGGTGAAAGAATTCTGTCGTTCAGTCGAAGGGGGCAGGTTTGCAGCTTCAGGATAACCCGAGCAGTGAAAGAGAAGTAAATCCTGTGTGATAAAATTAAAGTTACCTGGTACTTAGTGGAATAGTCGATAGACATGAATACTCGATTGAGGTGGATCTATGATTTAAATTTGATAGTTTACTTTTGCAATCATAGGTGCAGATGTTAATATTTGTTGAAACTTTAGTGTTTCGTATATTTTGTGTTAATATGATTAGTTCAGTTGAATCCGTTGATTATATATCGCATTTGATACTTGGAATGATCTTTCAAAACACAGCCAATAAATTAGAATGTCATTGTTCCACCATAGTCTTTGTGTTGATGATCAATATATTTTACCTAAAAACTAAAATGTCATCATTCGACGTGACCAAATCTAGTAAATCGATCCCTTACTTTCATTTTATGTTGTGCCATTTGACTTGAAACAGAGTTTAGGATAGGACGATTGTTGAAATACCTGGTTCAAAATATGTCACAACATTTATGTAGCTATATAAAACATGTTTAGGCGAAATGAGAAGTTAAAAGTTAAATTGCAAGTACTTTTTGCTATAACATATGATCTAGCTACAAATTCTGAAGTCTCCGTGGTGGTTCGTTTGCGGTTTTGGTTTGTGATATTCAACTAGTAGCATCACTCACTTTTTGTTGTATCATTTTACAAGCTTGATTTGTTCTAAAAATGTGTTTTTTTCCCTCATTCTGCTTATATATGAATGAACTTATAGTATTAAAATTTGTGAAACAATGGCTTTGTTATCCTTAGACGTTGATTGGAAGATGGCGTCTGTCCAAACTGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATAATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCGGTTACAGGGAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAGAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAGGTCTGCCTAGAATCCATCATGTCTTTGCTCTTCGAGATAACAATATTTGTTGAGGATTCAGTATGTGGAATTTGTAACACTAGTATACTATTGAGACATCTCTTTGATATCTCGAGTGAAATGGCTAAACGTTTAAAATCTCATTGTATAGCTTCACAGAAGAAATGCAGTACACATGCTTTATTTCAAATCTCTAAGCTCATTGGTTCGCGAAATGCTTATTAGTTGAATGTGCAATTTGCAGTGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTGGTAAGCCTGTTATCTATCCTTTTGATGATAACATCCCCTGCGATGAAATTTCTATTTGCGATTCTTGGAAGTTGAATTATCTGATCTTGGATGTTCATCCATATTTCATAAAATTGTTTTCTTTTAAAAAGATCTGGAATATTATTAGCTCTTAAAATGATTCAATATAGGCGATACCAATTAGTTGAATTTAAGTTTTAGTCATGTAGGTTTGTTTACTATAAGTACAATATTCGCTTTAGTCTTTTCAGAGATTATATACTAAGGGGAAATAATCAAATATAGAAACCTCTTAGTGCTATAGAACCTTATTCTTTTAAACATTGGATTGCGACGAATTTAAATGGAGGGACATAGAAGTGAGGATTCCTATAGTACATAACTAATATGGGATTAATGCTTCGTAGTTTATCTTTTGTATTATTAGCTATCAATTTCCACATTTGTTTTTTCTTTCTTTTCATCTGTTCGAGTCTTGCATATATTATTTTCACTCTGCTAAAGACAACCTTTTGAGTCAAAGTTGTTTGTACTTTATGTCAAATGAAACATTAAGCTAAATGTCATGTTGTGATTTTTTACATTATGATTTAGAACATAATCTATTTATATCATAATGATTATGCATCTAAATAGGACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTA</genome_strand>
        <mrna_strand>TGCCGCATTTACAGCTCTAATTCATTTGCTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTGATAGACAGATGGCGTCTGTCCAAACTGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATAATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCAGTTACGGGGAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAGAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAG....................................................................................................................................................................................................................................................TGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATTCATCTTTCCGGGGATGAACCACATTTTGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGTGTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCCAAGTATACTCAAATGTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331516" ref_strand="+" ref_description="SGN-E331516 [cTOD-9-I24]">
      <seq>tcatttacagctctaattcatttgcttcagacgttgattggaagatggcgtctgtccaaactgctttgacatcactcctatgcaagaaagggaacaataatccacaagtaaatgttccaagaagttccttcttgccagggtttgatttgacagggcaagttgcggttacagggagaagggaaacgcgtttcaattctttttcaagcccgagagcaacacttacctttgatcctcccagtactgataataaagagaagacaaagccaaagcacactgttgatcctaatgctcctgatttcctgccccttccaccattcgaacaatgctttccgaaaagctccaaggaatacagtgaagttatgcatgaagaaactggtcatgtactcaaagtcccatttcgacgtatccatctttccggggatgaaccacatttcgacacttatgataccagtggtcctcagggtgttaacccgcgcgttggacttcccaagctgcgcacggagtggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76973" stop="80486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77273" g_stop="77302" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77303" i_stop="78827" i_length="1525">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78828" g_stop="79149" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="352" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79150" i_stop="79393" i_length="244">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79394" g_stop="79521" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="480" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79522" i_stop="80157" i_length="636">
            <donor d_prob="0.509" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80158" g_stop="80186" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="509" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E331516" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77273" e_stop="77302"/>
          <exon e_start="78828" e_stop="79149"/>
          <exon e_start="79394" e_stop="79521"/>
          <exon e_start="80158" e_stop="80186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTACAGCTCTAATTCATTTGCTTCAGGTACGTTTATTCTTATTAAATTATTAAAAACCCTTAATTGCGTGTCGAATCTTTCAAAAATATATATATAAAATGTTTACGAGTGTGTATCCATTGGATCTGATACAAATGAGGCAACACAATAACATTTACGTGAAGAGTCTGAGCAACACAGATTAAGCTGATAAATAAAAAGAAAATTTATGCATACCTTTTTCTCTATTAGATCTGTATATTCGTTACTTCCATCGCGAAAATTGCTCGTAGCTAGTAACTTTTTTTTTGTTAATTCTATCATTTCCCGTAAGCATTAGACTTTCGGATATATCAGCAGACATAAGGAGAAGTATTTATCAAAGAGGGAATCAGATGTATCAGAGAGGGGAGGGATGTACTTGAAAGGATATAGGAATTTATTAGCGAGAGGCAATTTGAGAATTTTAGAGATTATGATAAAATAAGATGCGTATTTAGATAATTTTTTCAAAAATAAATGAACACTTTTGGTCAAAAGGTGGTCTAGCGCAACCTCCAAGTAGGAATAGATTCTATGAGTCGTGATACAGTTAAGATAGGGGGCATTTCTAGCATTGAAAATCCTTATTCTTATTGAATAGTTCAAATAACTAGTTGAACGTACCTATTCTTTTCAAGAATAGCCTCCCGTTATCGAAAAGAAGGGCCCGAAGAAGAGATGACTGGCCATCCTTCTCATCCCCCTTAGGAAGTAGAGCGCGGTGAAAGAATTCTGTCGTTCAGTCGAAGGGGGCAGGTTTGCAGCTTCAGGATAACCCGAGCAGTGAAAGAGAAGTAAATCCTGTGTGATAAAATTAAAGTTACCTGGTACTTAGTGGAATAGTCGATAGACATGAATACTCGATTGAGGTGGATCTATGATTTAAATTTGATAGTTTACTTTTGCAATCATAGGTGCAGATGTTAATATTTGTTGAAACTTTAGTGTTTCGTATATTTTGTGTTAATATGATTAGTTCAGTTGAATCCGTTGATTATATATCGCATTTGATACTTGGAATGATCTTTCAAAACACAGCCAATAAATTAGAATGTCATTGTTCCACCATAGTCTTTGTGTTGATGATCAATATATTTTACCTAAAAACTAAAATGTCATCATTCGACGTGACCAAATCTAGTAAATCGATCCCTTACTTTCATTTTATGTTGTGCCATTTGACTTGAAACAGAGTTTAGGATAGGACGATTGTTGAAATACCTGGTTCAAAATATGTCACAACATTTATGTAGCTATATAAAACATGTTTAGGCGAAATGAGAAGTTAAAAGTTAAATTGCAAGTACTTTTTGCTATAACATATGATCTAGCTACAAATTCTGAAGTCTCCGTGGTGGTTCGTTTGCGGTTTTGGTTTGTGATATTCAACTAGTAGCATCACTCACTTTTTGTTGTATCATTTTACAAGCTTGATTTGTTCTAAAAATGTGTTTTTTTCCCTCATTCTGCTTATATATGAATGAACTTATAGTATTAAAATTTGTGAAACAATGGCTTTGTTATCCTTAGACGTTGATTGGAAGATGGCGTCTGTCCAAACTGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATAATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCGGTTACAGGGAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAGAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAGGTCTGCCTAGAATCCATCATGTCTTTGCTCTTCGAGATAACAATATTTGTTGAGGATTCAGTATGTGGAATTTGTAACACTAGTATACTATTGAGACATCTCTTTGATATCTCGAGTGAAATGGCTAAACGTTTAAAATCTCATTGTATAGCTTCACAGAAGAAATGCAGTACACATGCTTTATTTCAAATCTCTAAGCTCATTGGTTCGCGAAATGCTTATTAGTTGAATGTGCAATTTGCAGTGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTGGTAAGCCTGTTATCTATCCTTTTGATGATAACATCCCCTGCGATGAAATTTCTATTTGCGATTCTTGGAAGTTGAATTATCTGATCTTGGATGTTCATCCATATTTCATAAAATTGTTTTCTTTTAAAAAGATCTGGAATATTATTAGCTCTTAAAATGATTCAATATAGGCGATACCAATTAGTTGAATTTAAGTTTTAGTCATGTAGGTTTGTTTACTATAAGTACAATATTCGCTTTAGTCTTTTCAGAGATTATATACTAAGGGGAAATAATCAAATATAGAAACCTCTTAGTGCTATAGAACCTTATTCTTTTAAACATTGGATTGCGACGAATTTAAATGGAGGGACATAGAAGTGAGGATTCCTATAGTACATAACTAATATGGGATTAATGCTTCGTAGTTTATCTTTTGTATTATTAGCTATCAATTTCCACATTTGTTTTTTCTTTCTTTTCATCTGTTCGAGTCTTGCATATATTATTTTCACTCTGCTAAAGACAACCTTTTGAGTCAAAGTTGTTTGTACTTTATGTCAAATGAAACATTAAGCTAAATGTCATGTTGTGATTTTTTACATTATGATTTAGAACATAATCTATTTATATCATAATGATTATGCATCTAAATAGGACTTCCCAAGCTGCGCACGGAGTGGATT</genome_strand>
        <mrna_strand>TCATTTACAGCTCTAATTCATTTGCTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTGATTGGAAGATGGCGTCTGTCCAAACTGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATAATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCGGTTACAGGGAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAGAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAG....................................................................................................................................................................................................................................................TGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCCCAAGCTGCGCACGGAGTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567074" ref_strand="+" ref_description="SGN-E567074 [11143]">
      <seq>gagacgttgatagaaagatggtgtctgtccaaactgctttgacatcactcctatgcaagaaagggaacaatcatccacaagtaaatgttccaagaagttccttcttgccagggttcgatttgacagggcaagttgctgttacgaggagaagggagacacgtttcaattctttttcaagcccgagagcaacactaacctttgatcctctcagtactgataataaagagaagacaaaaccaaagcacactgttgatcctaatgctcctgatttcctgccacttccagcattcgaacaatgctttccgaaaagctccaaggaatacagtgaagttatgcatgaagaaactggtcaagtgctcaaagtcccatttcgacgtatccatctttccggggatgaaccacattttgacacttatgataccagtggtcctcagggtgtaaacccgcgtgttggacttcccaagctgcgcacggagttggattaacaggagggagaagtcaaggaggaccaaggtatactcaaatgttctatgctaagcaggaaatcataactgaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78526" stop="80562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78825" g_stop="79149" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79150" i_stop="79393" i_length="244">
            <donor d_prob="0.876" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79394" g_stop="79521" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="453" r_length="128" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79522" i_stop="80157" i_length="636">
            <donor d_prob="0.509" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80158" g_stop="80262" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="560" r_length="107" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E567074" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78825" e_stop="79149"/>
          <exon e_start="79394" e_stop="79521"/>
          <exon e_start="80158" e_stop="80262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGACGTTGATTGGAAGATGGCGTCTGTCCAAACTGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATAATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCGGTTACAGGGAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAGAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAGGTCTGCCTAGAATCCATCATGTCTTTGCTCTTCGAGATAACAATATTTGTTGAGGATTCAGTATGTGGAATTTGTAACACTAGTATACTATTGAGACATCTCTTTGATATCTCGAGTGAAATGGCTAAACGTTTAAAATCTCATTGTATAGCTTCACAGAAGAAATGCAGTACACATGCTTTATTTCAAATCTCTAAGCTCATTGGTTCGCGAAATGCTTATTAGTTGAATGTGCAATTTGCAGTGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTGGTAAGCCTGTTATCTATCCTTTTGATGATAACATCCCCTGCGATGAAATTTCTATTTGCGATTCTTGGAAGTTGAATTATCTGATCTTGGATGTTCATCCATATTTCATAAAATTGTTTTCTTTTAAAAAGATCTGGAATATTATTAGCTCTTAAAATGATTCAATATAGGCGATACCAATTAGTTGAATTTAAGTTTTAGTCATGTAGGTTTGTTTACTATAAGTACAATATTCGCTTTAGTCTTTTCAGAGATTATATACTAAGGGGAAATAATCAAATATAGAAACCTCTTAGTGCTATAGAACCTTATTCTTTTAAACATTGGATTGCGACGAATTTAAATGGAGGGACATAGAAGTGAGGATTCCTATAGTACATAACTAATATGGGATTAATGCTTCGTAGTTTATCTTTTGTATTATTAGCTATCAATTTCCACATTTGTTTTTTCTTTCTTTTCATCTGTTCGAGTCTTGCATATATTATTTTCACTCTGCTAAAGACAACCTTTTGAGTCAAAGTTGTTTGTACTTTATGTCAAATGAAACATTAAGCTAAATGTCATGTTGTGATTTTTTACATTATGATTTAGAACATAATCTATTTATATCATAATGATTATGCATCTAAATAGGACTTCCCAAGCTGCGCACGGAG-TGGATTAACAGGAGGGAGAAGT-TAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAA</genome_strand>
        <mrna_strand>GAGACGTTGATAGAAAGATGGTGTCTGTCCAAACTGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATCATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTCGATTTGACAGGGCAAGTTGCTGTTACGAGGAGAAGGGAGACACGTTTCAATTCTTTTTCAAGCCCGAGAGCAACACTAACCTTTGATCCTCTCAGTACTGATAATAAAGAGAAGACAAAACCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCACTTCCAGCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAG....................................................................................................................................................................................................................................................TGAAGTTATGCATGAAGAAACTGGTCAAGTGCTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTTGACACTTATGATACCAGTGGTCCTCAGGGTGTAAACCCGCGTGTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCCCAAGCTGCGCACGGAGTTGGATTAACAGGAGGGAGAAGTCAAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGAAATCATAACTGAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477975" ref_strand="+" ref_description="SGN-E477975 [cSTD-2-F9]">
      <seq>ctcattccaattctcattcatttgcttgagacgttgagagaaagatggcgtctgtccaaactgctttgacatcactcctatccaagaaagggaacaatcatccacaagtaaatgttccaagaagtttcttcttgccagggttcgatttgacggggcaagttgctgttacgaggagaagggagacgcgtttcaattctttttcaagcccgagagcaacactaacctttgatcctcccagtactgataataaagagaagacaaagccaaagcacactgttgatcctaatgctcctgatttcctgccacttccagcattcgaacaatgctttccgaaaagctccaaggaatacagtgaagttatgcatgaagaaactggtcaagtgctcaaagtcccatttcgacgtatccatctttccggggatgaaccacattttgacacttatgataccagtggtcctcagggtgtaaacccgcgtgttggacttcccaagctgcgcacggagtggattaacaggagggagaagttaggaggaccaaggtatactcaaatgttctatgctaagcagggaatcataactgaggaaatggcatactgtgctgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78507" stop="80580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78828" g_stop="79149" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="352" r_length="322" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79150" i_stop="79393" i_length="244">
            <donor d_prob="0.876" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79394" g_stop="79521" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="480" r_length="128" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79522" i_stop="80157" i_length="636">
            <donor d_prob="0.509" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80158" g_stop="80280" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="603" r_length="123" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E477975" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78828" e_stop="79149"/>
          <exon e_start="79394" e_stop="79521"/>
          <exon e_start="80158" e_stop="80280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTTGATTGGAAGATGGCGTCTGTCCAAACTGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATAATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCGGTTACAGGGAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAGAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAGGTCTGCCTAGAATCCATCATGTCTTTGCTCTTCGAGATAACAATATTTGTTGAGGATTCAGTATGTGGAATTTGTAACACTAGTATACTATTGAGACATCTCTTTGATATCTCGAGTGAAATGGCTAAACGTTTAAAATCTCATTGTATAGCTTCACAGAAGAAATGCAGTACACATGCTTTATTTCAAATCTCTAAGCTCATTGGTTCGCGAAATGCTTATTAGTTGAATGTGCAATTTGCAGTGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTGGTAAGCCTGTTATCTATCCTTTTGATGATAACATCCCCTGCGATGAAATTTCTATTTGCGATTCTTGGAAGTTGAATTATCTGATCTTGGATGTTCATCCATATTTCATAAAATTGTTTTCTTTTAAAAAGATCTGGAATATTATTAGCTCTTAAAATGATTCAATATAGGCGATACCAATTAGTTGAATTTAAGTTTTAGTCATGTAGGTTTGTTTACTATAAGTACAATATTCGCTTTAGTCTTTTCAGAGATTATATACTAAGGGGAAATAATCAAATATAGAAACCTCTTAGTGCTATAGAACCTTATTCTTTTAAACATTGGATTGCGACGAATTTAAATGGAGGGACATAGAAGTGAGGATTCCTATAGTACATAACTAATATGGGATTAATGCTTCGTAGTTTATCTTTTGTATTATTAGCTATCAATTTCCACATTTGTTTTTTCTTTCTTTTCATCTGTTCGAGTCTTGCATATATTATTTTCACTCTGCTAAAGACAACCTTTTGAGTCAAAGTTGTTTGTACTTTATGTCAAATGAAACATTAAGCTAAATGTCATGTTGTGATTTTTTACATTATGATTTAGAACATAATCTATTTATATCATAATGATTATGCATCTAAATAGGACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTC</genome_strand>
        <mrna_strand>ACGTTGAGAGAAAGATGGCGTCTGTCCAAACTGCTTTGACATCACTCCTATCCAAGAAAGGGAACAATCATCCACAAGTAAATGTTCCAAGAAGTTTCTTCTTGCCAGGGTTCGATTTGACGGGGCAAGTTGCTGTTACGAGGAGAAGGGAGACGCGTTTCAATTCTTTTTCAAGCCCGAGAGCAACACTAACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCACTTCCAGCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAG....................................................................................................................................................................................................................................................TGAAGTTATGCATGAAGAAACTGGTCAAGTGCTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTTGACACTTATGATACCAGTGGTCCTCAGGGTGTAAACCCGCGTGTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGCATACTGTGCTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482338" ref_strand="+" ref_description="SGN-E482338 [cSTD-21-L4]">
      <seq>tcattcatttgcttgagacgttgatagaaagatggcgtctgtccaaactgctttgacatcactcctatccaagaaagggaacaatcatccacaagtaaatgttccaagaagttccttcttgccagggtttgatttgacggggcaagttgctgttacgaggagaagggagatgcgtttcaattctttttcaagccccagaacaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78514" stop="79317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78828" g_stop="79017" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="207" r_length="190" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E482338" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>190</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E482338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78828" e_stop="79017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTTGATTGGAAGATGGCGTCTGTCCAAACTGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATAATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCGGTTACAGGGAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAGAGCAACACT</genome_strand>
        <mrna_strand>ACGTTGATAGAAAGATGGCGTCTGTCCAAACTGCTTTGACATCACTCCTATCCAAGAAAGGGAACAATCATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACGGGGCAAGTTGCTGTTACGAGGAGAAGGGAGATGCGTTTCAATTCTTTTTCAAGCCCCAGAACAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705310" ref_strand="+" ref_description="SGN-E705310 [FA26DA10]">
      <seq>ctgtaagatggcgtctgtccaaactgctttgacatcactcctatgcaagaaagggaacaataatccacaagtaaatgttccaagaagttccttcttgccagggtttgatttgacagggcaagttgcggttacagggagaagggaaacgcgtttcaattctttttcaagcccgagagcaacacttacctttgatcctcccagtactgataataaagagaagacaaagccaaagcacactgttgatcctaatgctcctgatttcctgccccttccaccattcgaacaatgctttccgaaaagctccaaggaatacagtgaagttatgcatgaagaaactggtcatgtactcaaagtcccatttcgacgtatccatctttccggggatgaaccacatttcgacacttacgataccagtggtcctcagggtgttaacccgcgcgttggacttccaaagctacgcacggagtggattaacaggagggagaagttaggaggaccaaggcatactcaaatgttctatgctaagcagggaatcataactgaggaaatggtgtactgtgctgctcgtgagaagatggatccggaatttgtgaggtcagaagttgctcggggccgtgcaatcatcccttcaaacaagaagcaccctgagttggagccaatgatagtaggaagaaagttcttagtgaaagtcaatgccaacatcgggaactctgctgttgtaagctcgattgaagaagaagttcacaagcttcaatgggcaacaatgtggggtgcagatacgattatggatctctctactggtcgtcacatccacgagactcgtgagtggatcttgcgtaattctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78536" stop="80861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78835" g_stop="79149" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79150" i_stop="79393" i_length="244">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79394" g_stop="79521" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="443" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79522" i_stop="80157" i_length="636">
            <donor d_prob="0.509" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80158" g_stop="80561" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="847" r_length="404" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E705310" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78835" e_stop="79149"/>
          <exon e_start="79394" e_stop="79521"/>
          <exon e_start="80158" e_stop="80561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAAGATGGCGTCTGTCCAAACTGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATAATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCGGTTACAGGGAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAGAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAGGTCTGCCTAGAATCCATCATGTCTTTGCTCTTCGAGATAACAATATTTGTTGAGGATTCAGTATGTGGAATTTGTAACACTAGTATACTATTGAGACATCTCTTTGATATCTCGAGTGAAATGGCTAAACGTTTAAAATCTCATTGTATAGCTTCACAGAAGAAATGCAGTACACATGCTTTATTTCAAATCTCTAAGCTCATTGGTTCGCGAAATGCTTATTAGTTGAATGTGCAATTTGCAGTGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTGGTAAGCCTGTTATCTATCCTTTTGATGATAACATCCCCTGCGATGAAATTTCTATTTGCGATTCTTGGAAGTTGAATTATCTGATCTTGGATGTTCATCCATATTTCATAAAATTGTTTTCTTTTAAAAAGATCTGGAATATTATTAGCTCTTAAAATGATTCAATATAGGCGATACCAATTAGTTGAATTTAAGTTTTAGTCATGTAGGTTTGTTTACTATAAGTACAATATTCGCTTTAGTCTTTTCAGAGATTATATACTAAGGGGAAATAATCAAATATAGAAACCTCTTAGTGCTATAGAACCTTATTCTTTTAAACATTGGATTGCGACGAATTTAAATGGAGGGACATAGAAGTGAGGATTCCTATAGTACATAACTAATATGGGATTAATGCTTCGTAGTTTATCTTTTGTATTATTAGCTATCAATTTCCACATTTGTTTTTTCTTTCTTTTCATCTGTTCGAGTCTTGCATATATTATTTTCACTCTGCTAAAGACAACCTTTTGAGTCAAAGTTGTTTGTACTTTATGTCAAATGAAACATTAAGCTAAATGTCATGTTGTGATTTTTTACATTATGATTTAGAACATAATCTATTTATATCATAATGATTATGCATCTAAATAGGACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGGAACTCTGCTGTTGTAAGCTCGATTGAAGAAGAAGTTCACAAGCTTCAATGGGCAACAATGTGGGGTGCAGATACGATTATGGATCTCTCTACTGGTCGTCACATCCACGAGACTCGTGAGTGGATCTTGCGTAATTCTGCT</genome_strand>
        <mrna_strand>CTGTAAGATGGCGTCTGTCCAAACTGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATAATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCGGTTACAGGGAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAGAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAG....................................................................................................................................................................................................................................................TGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTACGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCCAAAGCTACGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGCATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGGAACTCTGCTGTTGTAAGCTCGATTGAAGAAGAAGTTCACAAGCTTCAATGGGCAACAATGTGGGGTGCAGATACGATTATGGATCTCTCTACTGGTCGTCACATCCACGAGACTCGTGAGTGGATCTTGCGTAATTCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689429" ref_strand="+" ref_description="SGN-E689429 [t3_tus_84_L19]">
      <seq>ctttaagctttgacatcactcctatgcaagaaagggaacacccatcaacaagtaaatgttccaagaagttccttcttgccagggtttgatttgacagggcaagttgcggttacccccagaagggaaacgcgtttcaattctttttcaagcccgaaagcaacacttacctttgatcctcccagtactgataataaagagaagacaaagccaaagcacactgttgatcctaatgctcctgatttcctgccccttccaccattcgaacaatgctttccgaaaagctccaaggaatacagtgaagttatgcatgaagaaactggtcatgtactcaaagttccatttcgacgtatccatctttccggggatgaaccacatttcgacacttatgataccagtggtcctcagggtgttaacccgcgcgttggacttcccaagctgcgcacggagtggattaacaggagggagaagttaggaggaccaaggtatactcaaatgttctatgctaagcagggaatcataactgaggaaatggtgtactgtgctgctcgtgagaagatggatccggaatttgtgaggtcagaagttgctcggggccgtgcaatcatcccttcaaacaagaagcaccctgagttggagccaatgatagtaggaagaaagttcttagtgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78560" stop="80703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78854" g_stop="79149" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79150" i_stop="79393" i_length="244">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79394" g_stop="79521" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="424" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79522" i_stop="80157" i_length="636">
            <donor d_prob="0.509" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80158" g_stop="80403" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="670" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E689429" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78854" e_stop="79149"/>
          <exon e_start="79394" e_stop="79521"/>
          <exon e_start="80158" e_stop="80403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATAATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCGGTTACAGGGAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAGAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAGGTCTGCCTAGAATCCATCATGTCTTTGCTCTTCGAGATAACAATATTTGTTGAGGATTCAGTATGTGGAATTTGTAACACTAGTATACTATTGAGACATCTCTTTGATATCTCGAGTGAAATGGCTAAACGTTTAAAATCTCATTGTATAGCTTCACAGAAGAAATGCAGTACACATGCTTTATTTCAAATCTCTAAGCTCATTGGTTCGCGAAATGCTTATTAGTTGAATGTGCAATTTGCAGTGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTGGTAAGCCTGTTATCTATCCTTTTGATGATAACATCCCCTGCGATGAAATTTCTATTTGCGATTCTTGGAAGTTGAATTATCTGATCTTGGATGTTCATCCATATTTCATAAAATTGTTTTCTTTTAAAAAGATCTGGAATATTATTAGCTCTTAAAATGATTCAATATAGGCGATACCAATTAGTTGAATTTAAGTTTTAGTCATGTAGGTTTGTTTACTATAAGTACAATATTCGCTTTAGTCTTTTCAGAGATTATATACTAAGGGGAAATAATCAAATATAGAAACCTCTTAGTGCTATAGAACCTTATTCTTTTAAACATTGGATTGCGACGAATTTAAATGGAGGGACATAGAAGTGAGGATTCCTATAGTACATAACTAATATGGGATTAATGCTTCGTAGTTTATCTTTTGTATTATTAGCTATCAATTTCCACATTTGTTTTTTCTTTCTTTTCATCTGTTCGAGTCTTGCATATATTATTTTCACTCTGCTAAAGACAACCTTTTGAGTCAAAGTTGTTTGTACTTTATGTCAAATGAAACATTAAGCTAAATGTCATGTTGTGATTTTTTACATTATGATTTAGAACATAATCTATTTATATCATAATGATTATGCATCTAAATAGGACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAG</genome_strand>
        <mrna_strand>CTTTAAGCTTTGACATCACTCCTATGCAAGAAAGGGAACACCCATCAACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCGGTTACCCCCAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAAAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAG....................................................................................................................................................................................................................................................TGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTTCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334275" ref_strand="+" ref_description="SGN-E334275 [cTOD-21-K13]">
      <seq>tgctttgacatcactcctatgcaagaaagggaacaataatccacaagtaaatgttccaagaagttccttcttgccagggtttgatttgacagggcaagttgcggttacagggagaagggaaacgcgtttcaattctttttcaagcccgaaagcaacacttacctttgatcctcccagtactgataataaagagaagacaaagccaaagcacactgttgatcctaatgctcctgatttcctgccccttccaccattcgaacaatgctttccgaaaagctccaaggaatacagtgaagttatgcatgaagaaactggtcatgtactcaaagtcccatttcgacgtatccatctttccggggatgaaccacatttcgacacttatgataccagtggtcctcagggtgttaacccgcgcgttggacttcccaagctgcgcacggagtggattaacaggagggagaagttaggaggaccaaggtatactcaaatgttctatgctaagcagggaatcataactgaggaaatggtgtactgtgctgctcgtgagaagatggatccggaatttgtgaggtcagaagttgctcggggccgtgcaatcatcccttcaaacagaagcaccctgagttggagccaatgatagtaggaagaaagttcttagtgaaagtcaatgccaacatcgggaactctgctgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78559" stop="80733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78859" g_stop="79149" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79150" i_stop="79393" i_length="244">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79394" g_stop="79521" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="419" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79522" i_stop="80157" i_length="636">
            <donor d_prob="0.509" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80158" g_stop="80433" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="694" r_length="275" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E334275" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78859" e_stop="79149"/>
          <exon e_start="79394" e_stop="79521"/>
          <exon e_start="80158" e_stop="80433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATAATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCGGTTACAGGGAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAGAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAGGTCTGCCTAGAATCCATCATGTCTTTGCTCTTCGAGATAACAATATTTGTTGAGGATTCAGTATGTGGAATTTGTAACACTAGTATACTATTGAGACATCTCTTTGATATCTCGAGTGAAATGGCTAAACGTTTAAAATCTCATTGTATAGCTTCACAGAAGAAATGCAGTACACATGCTTTATTTCAAATCTCTAAGCTCATTGGTTCGCGAAATGCTTATTAGTTGAATGTGCAATTTGCAGTGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTGGTAAGCCTGTTATCTATCCTTTTGATGATAACATCCCCTGCGATGAAATTTCTATTTGCGATTCTTGGAAGTTGAATTATCTGATCTTGGATGTTCATCCATATTTCATAAAATTGTTTTCTTTTAAAAAGATCTGGAATATTATTAGCTCTTAAAATGATTCAATATAGGCGATACCAATTAGTTGAATTTAAGTTTTAGTCATGTAGGTTTGTTTACTATAAGTACAATATTCGCTTTAGTCTTTTCAGAGATTATATACTAAGGGGAAATAATCAAATATAGAAACCTCTTAGTGCTATAGAACCTTATTCTTTTAAACATTGGATTGCGACGAATTTAAATGGAGGGACATAGAAGTGAGGATTCCTATAGTACATAACTAATATGGGATTAATGCTTCGTAGTTTATCTTTTGTATTATTAGCTATCAATTTCCACATTTGTTTTTTCTTTCTTTTCATCTGTTCGAGTCTTGCATATATTATTTTCACTCTGCTAAAGACAACCTTTTGAGTCAAAGTTGTTTGTACTTTATGTCAAATGAAACATTAAGCTAAATGTCATGTTGTGATTTTTTACATTATGATTTAGAACATAATCTATTTATATCATAATGATTATGCATCTAAATAGGACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGGAACTCTGCTGTTG</genome_strand>
        <mrna_strand>TGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATAATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCGGTTACAGGGAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAAAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAG....................................................................................................................................................................................................................................................TGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAAC-AGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGGAACTCTGCTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601426" ref_strand="+" ref_description="SGN-E601426 [54464]">
      <seq>ctttttcaagcccgagagcaacactaacctttgatcctcccagtactgataataaagagaagacaaagccaaagcacactgttgatcctaatgctcctgatttcctgccacttccagcattcgaacaatgctttccaaaaagctccaagggaatacagtgaagttatgcatgaagaaactggtcaagtgctcaaagtcccatttcgacgtatccatctttccggggatgaaccacattttgacacttatgataccagtggtcctcagggtgtaaacccgcatgttggacttcccaagctgcgcacggagtggattaacaggagggagaagttaggaggaccaaggtatactcaaatgttctatgctaagcagggaatcataactgaggaaatggcatactgtgctgctcgtgaaaaaatggatccggaatttgtgaggtcagaagttgctcgaggccgtgcaatcatcccttcaaacaagaagcaccctgagttggagccaatgatagtaggaagaaagttcttagtgaaagtcaatgccaacatcggaaactctgctgttgtaagctcgattgaagaagaagttcacaagcttcaatgggcaacaatgtggggtgcagatacgattatggatctctctactggtcgtcacatccacgagactcgtgagtggatcttgcgtaattctgctgtaccagtaggcactgtgccaatttaccaagcactagaaaaagtaaacggcattgctgagaatctgagttgggaagtttcagagagaccttaattgaacaaagctgagcaaagtgtcgattacttccacaatcccatgccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78693" stop="81001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78993" g_stop="79149" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79150" i_stop="79393" i_length="244">
            <donor d_prob="0.876" d_score="0.90"/>
            <acceptor a_prob="0.953" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79394" g_stop="79521" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="286" r_length="128" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79522" i_stop="80157" i_length="636">
            <donor d_prob="0.509" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80158" g_stop="80701" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="832" r_length="546" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E601426" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E601426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78993" e_stop="79149"/>
          <exon e_start="79394" e_stop="79521"/>
          <exon e_start="80158" e_stop="80701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCAAGCCCGAGAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAA-GGAATACAGGTCTGCCTAGAATCCATCATGTCTTTGCTCTTCGAGATAACAATATTTGTTGAGGATTCAGTATGTGGAATTTGTAACACTAGTATACTATTGAGACATCTCTTTGATATCTCGAGTGAAATGGCTAAACGTTTAAAATCTCATTGTATAGCTTCACAGAAGAAATGCAGTACACATGCTTTATTTCAAATCTCTAAGCTCATTGGTTCGCGAAATGCTTATTAGTTGAATGTGCAATTTGCAGTGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTGGTAAGCCTGTTATCTATCCTTTTGATGATAACATCCCCTGCGATGAAATTTCTATTTGCGATTCTTGGAAGTTGAATTATCTGATCTTGGATGTTCATCCATATTTCATAAAATTGTTTTCTTTTAAAAAGATCTGGAATATTATTAGCTCTTAAAATGATTCAATATAGGCGATACCAATTAGTTGAATTTAAGTTTTAGTCATGTAGGTTTGTTTACTATAAGTACAATATTCGCTTTAGTCTTTTCAGAGATTATATACTAAGGGGAAATAATCAAATATAGAAACCTCTTAGTGCTATAGAACCTTATTCTTTTAAACATTGGATTGCGACGAATTTAAATGGAGGGACATAGAAGTGAGGATTCCTATAGTACATAACTAATATGGGATTAATGCTTCGTAGTTTATCTTTTGTATTATTAGCTATCAATTTCCACATTTGTTTTTTCTTTCTTTTCATCTGTTCGAGTCTTGCATATATTATTTTCACTCTGCTAAAGACAACCTTTTGAGTCAAAGTTGTTTGTACTTTATGTCAAATGAAACATTAAGCTAAATGTCATGTTGTGATTTTTTACATTATGATTTAGAACATAATCTATTTATATCATAATGATTATGCATCTAAATAGGACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGGAACTCTGCTGTTGTAAGCTCGATTGAAGAAGAAGTTCACAAGCTTCAATGGGCAACAATGTGGGGTGCAGATACGATTATGGATCTCTCTACTGGTCGTCACATCCACGAGACTCGTGAGTGGATCTTGCGTAATTCTGCTGTACCAGTAGGCACTGTGCCAATTTACCAAGCACTAGAAAAAGTAAACGGGATTGCTGAGAATCTTAGTTGGGAAGTGTTTAGGGAGACCTTAATTGAAC-AAGCTGAGCAAGGAGTTGATTACTT-CACAAT-CCATGCCGG</genome_strand>
        <mrna_strand>CTTTTTCAAGCCCGAGAGCAACACTAACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCACTTCCAGCATTCGAACAATGCTTTCCAAAAAGCTCCAAGGGAATACAG....................................................................................................................................................................................................................................................TGAAGTTATGCATGAAGAAACTGGTCAAGTGCTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTTGACACTTATGATACCAGTGGTCCTCAGGGTGTAAACCCGCATGTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGCATACTGTGCTGCTCGTGAAAAAATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGAGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGAAACTCTGCTGTTGTAAGCTCGATTGAAGAAGAAGTTCACAAGCTTCAATGGGCAACAATGTGGGGTGCAGATACGATTATGGATCTCTCTACTGGTCGTCACATCCACGAGACTCGTGAGTGGATCTTGCGTAATTCTGCTGTACCAGTAGGCACTGTGCCAATTTACCAAGCACTAGAAAAAGTAAACGGCATTGCTGAGAATCTGAGTTGGGAAGT-TTCAGAGAGACCTTAATTGAACAAAGCTGAGCAAAGTGTCGATTACTTCCACAATCCCATGCCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736279" ref_strand="+" ref_description="SGN-E736279 [LC05AC06]">
      <seq>aataaactggtcatgtactcaaagtcccatttcgacgtatccatctttccggggatgaaccacatttcgacacttatgataccagtggtcctcagggtgttaacccgcgcgttggacttcccaagctgcgcacggagtggattaacaggagggagaagttaggaggaccaaggtatactcaaatgttctatgctaagcagggaatcataactgaggaaatggtgtactgtgctgctcgtgagaagatggatccggaatttgtgaggtcagaagttgctcggggccgtgcaatcatcccttcaaacaagaagcaccctgagttggagccaatgatagtaggaagaaagttcttagtgaaagtcaatgccaacatcgggaactctgctgttgtaagctcgattgaagaagaagttcacaagcttcaatgggcaacaatgtggggtgcagatacgattatggatctctctactggtcgtcacatccacgagactcgtgagtggatcttgcgtaattctgctgtaccagtaggcactgtgccaatttaccaagcactagaaaaagtaaacgggattgctgagaatcttagttgggaagtgtttagggagaccttaattgaacaagctgagcaaggagttgattacttcacaatccatgccggagtccttctcaggtacatcccactgacagcaaaacggatgaccggaattgtttctcgtggaggctcaattcatgcaaagtggtgcttagcttatcacaaggagaatttcgcttatgaacattgggatgacatacttgacatctgtaatcagtacgatatatcgttatcanttggtgatggactgagacctggttcaatttatgatgcaaatgacaccgctcagtttgctgagctcttgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79108" stop="81242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79408" g_stop="79521" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79522" i_stop="80157" i_length="636">
            <donor d_prob="0.509" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80158" g_stop="80942" g_length="785"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="899" r_length="785" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E736279" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>899</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79408" e_stop="79521"/>
          <exon e_start="80158" e_stop="80942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTGGTAAGCCTGTTATCTATCCTTTTGATGATAACATCCCCTGCGATGAAATTTCTATTTGCGATTCTTGGAAGTTGAATTATCTGATCTTGGATGTTCATCCATATTTCATAAAATTGTTTTCTTTTAAAAAGATCTGGAATATTATTAGCTCTTAAAATGATTCAATATAGGCGATACCAATTAGTTGAATTTAAGTTTTAGTCATGTAGGTTTGTTTACTATAAGTACAATATTCGCTTTAGTCTTTTCAGAGATTATATACTAAGGGGAAATAATCAAATATAGAAACCTCTTAGTGCTATAGAACCTTATTCTTTTAAACATTGGATTGCGACGAATTTAAATGGAGGGACATAGAAGTGAGGATTCCTATAGTACATAACTAATATGGGATTAATGCTTCGTAGTTTATCTTTTGTATTATTAGCTATCAATTTCCACATTTGTTTTTTCTTTCTTTTCATCTGTTCGAGTCTTGCATATATTATTTTCACTCTGCTAAAGACAACCTTTTGAGTCAAAGTTGTTTGTACTTTATGTCAAATGAAACATTAAGCTAAATGTCATGTTGTGATTTTTTACATTATGATTTAGAACATAATCTATTTATATCATAATGATTATGCATCTAAATAGGACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGGAACTCTGCTGTTGTAAGCTCGATTGAAGAAGAAGTTCACAAGCTTCAATGGGCAACAATGTGGGGTGCAGATACGATTATGGATCTCTCTACTGGTCGTCACATCCACGAGACTCGTGAGTGGATCTTGCGTAATTCTGCTGTACCAGTAGGCACTGTGCCAATTTACCAAGCACTAGAAAAAGTAAACGGGATTGCTGAGAATCTTAGTTGGGAAGTGTTTAGGGAGACCTTAATTGAACAAGCTGAGCAAGGAGTTGATTACTTCACAATCCATGCCGGAGTCCTTCTCAGGTACATCCCACTGACAGCAAAACGGATGACCGGAATTGTTTCTCGTGGAGGCTCAATTCATGCAAAGTGGTGCTTAGCTTATCACAAGGAGAATTTCGCTTATGAACATTGGGATGACATACTTGACATCTGTAATCAGTACGATATATCGTTATCAATTGGTGATGGACTGAGACCTGGTTCAATTTATGATGCAAATGACACCGCTCAGTTTGCTGAGCTCTTGACT</genome_strand>
        <mrna_strand>AATAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGGAACTCTGCTGTTGTAAGCTCGATTGAAGAAGAAGTTCACAAGCTTCAATGGGCAACAATGTGGGGTGCAGATACGATTATGGATCTCTCTACTGGTCGTCACATCCACGAGACTCGTGAGTGGATCTTGCGTAATTCTGCTGTACCAGTAGGCACTGTGCCAATTTACCAAGCACTAGAAAAAGTAAACGGGATTGCTGAGAATCTTAGTTGGGAAGTGTTTAGGGAGACCTTAATTGAACAAGCTGAGCAAGGAGTTGATTACTTCACAATCCATGCCGGAGTCCTTCTCAGGTACATCCCACTGACAGCAAAACGGATGACCGGAATTGTTTCTCGTGGAGGCTCAATTCATGCAAAGTGGTGCTTAGCTTATCACAAGGAGAATTTCGCTTATGAACATTGGGATGACATACTTGACATCTGTAATCAGTACGATATATCGTTATCANTTGGTGATGGACTGAGACCTGGTTCAATTTATGATGCAAATGACACCGCTCAGTTTGCTGAGCTCTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333069" ref_strand="+" ref_description="SGN-E333069 [cTOD-19-C12]">
      <seq>agaaactggtcatgtactcaaagtcccatttcgacgtatccatctttccggggatgaaccacatttcgacacttatgataccagtggtcctcagggtgttaacccgcgcgttggacttcccaagctgcgcacggagtggattaacaggagggagaagttaggaggaccaaggtatactcaaatgttctatgctaagcagggaatcataactgaggaaatggtgtactgtgctgctcgtgagaagatggatccggaatttgtgaggtcagaagttgctcgggccgtgcaatcatcccttcaaacaagaagcaccctgagttggagccaatgatagtaggaagaaagttcttagtgaaagtcaatgccaacatcgggaactctgctgttgtaagctcgattgaagaagaagttcacaagcttcaatgggcaacaatgtggggtgcagatacgattatggatctctctactggtcgtcacatccacgagactcgtgagtggatcttgcgtaattctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79109" stop="80861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79409" g_stop="79521" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79522" i_stop="80157" i_length="636">
            <donor d_prob="0.509" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80158" g_stop="80561" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="516" r_length="403" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E333069" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79409" e_stop="79521"/>
          <exon e_start="80158" e_stop="80561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTGGTAAGCCTGTTATCTATCCTTTTGATGATAACATCCCCTGCGATGAAATTTCTATTTGCGATTCTTGGAAGTTGAATTATCTGATCTTGGATGTTCATCCATATTTCATAAAATTGTTTTCTTTTAAAAAGATCTGGAATATTATTAGCTCTTAAAATGATTCAATATAGGCGATACCAATTAGTTGAATTTAAGTTTTAGTCATGTAGGTTTGTTTACTATAAGTACAATATTCGCTTTAGTCTTTTCAGAGATTATATACTAAGGGGAAATAATCAAATATAGAAACCTCTTAGTGCTATAGAACCTTATTCTTTTAAACATTGGATTGCGACGAATTTAAATGGAGGGACATAGAAGTGAGGATTCCTATAGTACATAACTAATATGGGATTAATGCTTCGTAGTTTATCTTTTGTATTATTAGCTATCAATTTCCACATTTGTTTTTTCTTTCTTTTCATCTGTTCGAGTCTTGCATATATTATTTTCACTCTGCTAAAGACAACCTTTTGAGTCAAAGTTGTTTGTACTTTATGTCAAATGAAACATTAAGCTAAATGTCATGTTGTGATTTTTTACATTATGATTTAGAACATAATCTATTTATATCATAATGATTATGCATCTAAATAGGACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGGAACTCTGCTGTTGTAAGCTCGATTGAAGAAGAAGTTCACAAGCTTCAATGGGCAACAATGTGGGGTGCAGATACGATTATGGATCTCTCTACTGGTCGTCACATCCACGAGACTCGTGAGTGGATCTTGCGTAATTCTGCT</genome_strand>
        <mrna_strand>AGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTC-GGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGGAACTCTGCTGTTGTAAGCTCGATTGAAGAAGAAGTTCACAAGCTTCAATGGGCAACAATGTGGGGTGCAGATACGATTATGGATCTCTCTACTGGTCGTCACATCCACGAGACTCGTGAGTGGATCTTGCGTAATTCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282032" ref_strand="+" ref_description="SGN-E282032 [cLES-2-L9]">
      <seq>tcaaatgttctatgctaagcagggaatcataactgaggaaatggtgtactgtgctgctcgtgagaagatggatccggaatttgtgaggtcagaagttgctcggggccgtgcaatcatcccttcaaacaagaagcaccctgagttggagccaatgatagtaggaagaaagttcttagtgaaagtcaatgccaacatcgggaactctgctgttgtaagctcgattgaagaagaagttcacaagcttcaatgggcaacaatgtggggtgcagatacgattatggatctctctactggtcgtcacatccacgagactcgtgagtggatcttgcgtaattctgctgtaccagtaggcactgtgccaatttaccaagcactagaaaaagtaaacgggattgctgagaatcttagttgggaagtgtttagggagacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79922" stop="80952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80222" g_stop="80652" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E282032" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80222" e_stop="80652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGGAACTCTGCTGTTGTAAGCTCGATTGAAGAAGAAGTTCACAAGCTTCAATGGGCAACAATGTGGGGTGCAGATACGATTATGGATCTCTCTACTGGTCGTCACATCCACGAGACTCGTGAGTGGATCTTGCGTAATTCTGCTGTACCAGTAGGCACTGTGCCAATTTACCAAGCACTAGAAAAAGTAAACGGGATTGCTGAGAATCTTAGTTGGGAAGTGTTTAGGGAGACCT</genome_strand>
        <mrna_strand>TCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGGAACTCTGCTGTTGTAAGCTCGATTGAAGAAGAAGTTCACAAGCTTCAATGGGCAACAATGTGGGGTGCAGATACGATTATGGATCTCTCTACTGGTCGTCACATCCACGAGACTCGTGAGTGGATCTTGCGTAATTCTGCTGTACCAGTAGGCACTGTGCCAATTTACCAAGCACTAGAAAAAGTAAACGGGATTGCTGAGAATCTTAGTTGGGAAGTGTTTAGGGAGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570119" ref_strand="+" ref_description="SGN-E570119 [14654]">
      <seq>cggaaactctgctgttgtaagctcgattgaagaagaagttcacaagcttcaatgggcaacaatgtggggtgcagatacgattatggatctctctactggtcgtcacatccacgagactcgtgagtggatcttgcgtaattctgctgtaccagtaggcactgtgccaatttaccaagcactagaaaaagtaaacggcattgctgagaatctgagttgggaagttttcagagagaccttaattgaacaagctgagcaaggtgttgattacttcacaatccatgccggagtccttcttaggtacatcccactgacagcaaaacggatgactggaattgtttctcgtggaggctcaattcatgcaaagtggtgcttagcttatcacaaggagaatttcgcttatgaacattgggatgacatacttgacatctgtaatcagtacgatatatcgttatcaattggtgatggcactgagacctggttcaatttatgatgcaacatgatacttgctcaggtttgctgaggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80117" stop="81217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80417" g_stop="80933" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E570119" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80417" e_stop="80933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGAACTCTGCTGTTGTAAGCTCGATTGAAGAAGAAGTTCACAAGCTTCAATGGGCAACAATGTGGGGTGCAGATACGATTATGGATCTCTCTACTGGTCGTCACATCCACGAGACTCGTGAGTGGATCTTGCGTAATTCTGCTGTACCAGTAGGCACTGTGCCAATTTACCAAGCACTAGAAAAAGTAAACGGGATTGCTGAGAATCTTAGTTGGGAAGTGTTTAGGGAGACCTTAATTGAACAAGCTGAGCAAGGAGTTGATTACTTCACAATCCATGCCGGAGTCCTTCTCAGGTACATCCCACTGACAGCAAAACGGATGACCGGAATTGTTTCTCGTGGAGGCTCAATTCATGCAAAGTGGTGCTTAGCTTATCACAAGGAGAATTTCGCTTATGAACATTGGGATGACATACTTGACATCTGTAATCAGTACGATATATCGTTATCAATTGGTGATGG-ACTGAGACCTGGTTCAATTTATGATGCAA-ATGACAC-CGCTCA-GTTTGCTGAG</genome_strand>
        <mrna_strand>CGGAAACTCTGCTGTTGTAAGCTCGATTGAAGAAGAAGTTCACAAGCTTCAATGGGCAACAATGTGGGGTGCAGATACGATTATGGATCTCTCTACTGGTCGTCACATCCACGAGACTCGTGAGTGGATCTTGCGTAATTCTGCTGTACCAGTAGGCACTGTGCCAATTTACCAAGCACTAGAAAAAGTAAACGGCATTGCTGAGAATCTGAGTTGGGAAGTTTTCAGAGAGACCTTAATTGAACAAGCTGAGCAAGGTGTTGATTACTTCACAATCCATGCCGGAGTCCTTCTTAGGTACATCCCACTGACAGCAAAACGGATGACTGGAATTGTTTCTCGTGGAGGCTCAATTCATGCAAAGTGGTGCTTAGCTTATCACAAGGAGAATTTCGCTTATGAACATTGGGATGACATACTTGACATCTGTAATCAGTACGATATATCGTTATCAATTGGTGATGGCACTGAGACCTGGTTCAATTTATGATGCAACATGATACTTGCTCAGGTTTGCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574132" ref_strand="+" ref_description="SGN-E574132 [33551]">
      <seq>ctgagacctggttcaatttatgatgcaaatgatactgctcagtttgctgagctcttgactcaaggggagctgactcgccgagcttgggaaaaggatgtacaggtaatgaatgaagggcctggacacgtaccaatgcataagattcccgagaacatgcagaaacagctagagtggtgtaatgaagcaccattttacactcttggaccattgacaactgatatagctcccggatatgatcatatcacctcagccattggtgcagccaatataggagcacttgggactgcacttctgtgttacgtcactccaaaagagcatcttggtctgcctaatcgcgatgatgtgaagacaggggtaatatcatataagatagctgctcatgcagctgatcttgcaaaaggtcacccgctatctcaagcttgggatgatgcactaagcaaggcaagatttgagttcagatggatggaccaattcgctttgtcattggaccccgttactgcaatgtccttccacgatgaaactttaccagccgatggggctaaaggtggcaacatttctgctcgatgtgcgggcctaaggttttgctccatgaaaataaccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80583" stop="81914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80883" g_stop="80984" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80985" i_stop="81117" i_length="133">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81118" g_stop="81614" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="602" r_length="500" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E574132" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80883" e_stop="80984"/>
          <exon e_start="81118" e_stop="81614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGACCTGGTTCAATTTATGATGCAAATGACACCGCTCAGTTTGCTGAGCTCTTGACTCAAGGGGAGCTGACTCGCCGAGCTTGGGAAAAGGATGTACAGGTAAATCGCTAATGCTGTCTATTTCTGTTTCAGTAATTAGCTTTTTGTTTGTCTATTTCGTCTCCTGAATATCAGTTTTGAGCTACCGCCTAATTGGTAACGCTTTAACGACAAACATTGTGTTTGATTTCAGGTTATGAATGAAGGACCTGGACATGTACCAATGCATAAGATTCCCGAGAACATGCAGAAACAGCTAGAGTGGTGTAATGAAGCACCATTTTACACTCTTGGACCATTGACAACTGATATAGCTCCCGGATATGATCATATCACCTCAGCTATCGGTGCAGCCAATATAGGAGCACTCGGGACTGCACTTCTGTGTTACGTCACTCCAAAAGAGCATCTTGGTCTGCCTAATCGCGATGACGTGAAGACAGGTGTAATATCATATAAGATAGCTGCTCATGCAGCTGATCTTGCAAAAGGTCACCCGCTATCTCAAGCCTGGGATGATGCACTTAGCAAGGCAAGATTTGAGTTCAGATGGATGGACCAATTCGCTTTATCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAA-GTGGC-ACATTTCTGCTCTATGTGCGGGCCTAA-GTTTTGCTCCATGAAAATAACCGA</genome_strand>
        <mrna_strand>CTGAGACCTGGTTCAATTTATGATGCAAATGATACTGCTCAGTTTGCTGAGCTCTTGACTCAAGGGGAGCTGACTCGCCGAGCTTGGGAAAAGGATGTACAG.....................................................................................................................................GTAATGAATGAAGGGCCTGGACACGTACCAATGCATAAGATTCCCGAGAACATGCAGAAACAGCTAGAGTGGTGTAATGAAGCACCATTTTACACTCTTGGACCATTGACAACTGATATAGCTCCCGGATATGATCATATCACCTCAGCCATTGGTGCAGCCAATATAGGAGCACTTGGGACTGCACTTCTGTGTTACGTCACTCCAAAAGAGCATCTTGGTCTGCCTAATCGCGATGATGTGAAGACAGGGGTAATATCATATAAGATAGCTGCTCATGCAGCTGATCTTGCAAAAGGTCACCCGCTATCTCAAGCTTGGGATGATGCACTAAGCAAGGCAAGATTTGAGTTCAGATGGATGGACCAATTCGCTTTGTCATTGGACCCCGTTACTGCAATGTCCTTCCACGATGAAACTTTACCAGCCGATGGGGCTAAAGGTGGCAACATTTCTGCTCGATGTGCGGGCCTAAGGTTTTGCTCCATGAAAATAACCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585928" ref_strand="-" ref_description="SGN-E585928 [68393]">
      <seq>atatgatcatatcacctcagccattggtgcagccaatataggagcacttgggactgcacttctgtgttacgtcactccaaaagagcatcttggtctgcctaatcgcgatgatgtgaagacaggggtaatatcatataagatagctgctcatgcagctgatcttgcaaaaggtcacccgctatctcaagcttgggatgatgcactaagcaaggcaagatttgagttcagatggatggaccaattcgctttgtcattggaccccgttactgcaatgtccttccacgatgaaactttaccagccgatggggctaaagtggcacatttctgctcgatgtgcgggcctaagttttgctccatgaaaataaccgaagatataaggaagtatgctgaaaatcatggttatggaaatgcagaggaagccattcagcagggcatggatgctatgagtgcagcgtttcaagctgctaaaaaaaccattagtggggaacaacacggtgaggttggtggtgagatctacttgccagaaaattacatcaactctttgaagagccaaaggaatatataaagctcgaaaactggctcagagatttctgaagtgatcacagctccatcggccagtcaaggaggcggtagtaggagcctcattatcaagtgttaggtaagtatctagtttggtattgttaaataaactgagacaacagccttgttcaattgaactctcctttgttggtaataagaaatcgcgtattttcttgtcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80946" stop="82391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81246" g_stop="81800" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81801" i_stop="81906" i_length="106">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.413" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81907" g_stop="82108" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="756" r_length="201" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E585928" ref_strand="-">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585928" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81246" e_stop="81800"/>
          <exon e_start="81907" e_stop="82108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGATCATATCACCTCAGCTATCGGTGCAGCCAATATAGGAGCACTCGGGACTGCACTTCTGTGTTACGTCACTCCAAAAGAGCATCTTGGTCTGCCTAATCGCGATGACGTGAAGACAGGTGTAATATCATATAAGATAGCTGCTCATGCAGCTGATCTTGCAAAAGGTCACCCGCTATCTCAAGCCTGGGATGATGCACTTAGCAAGGCAAGATTTGAGTTCAGATGGATGGACCAATTCGCTTTATCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCTATGTGCGGGCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGAAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAGAATTACATCAACTCTTTGAAGAGCCAAAGGTGAGTATTACATTCTGCAAGTCCTTTGAAGACACTCGTATAATGCAGAGTCTTTGTGTATTCCGATTAAAGCTCCTTTCACTTACCTTAAAGAATACAATTTCAGGAATGTGTAAAGATCGAAAACTGGCTCACAGATTTCTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAGGTAAGTATCTAGTTTGGTACTGTTAAATAAACTGAGACAACAGCCTTGTTCAATGAAACTCTCCTTTGTTAGTAATGAGAAAAACGCGTATTTTCTTGT</genome_strand>
        <mrna_strand>ATATGATCATATCACCTCAGCCATTGGTGCAGCCAATATAGGAGCACTTGGGACTGCACTTCTGTGTTACGTCACTCCAAAAGAGCATCTTGGTCTGCCTAATCGCGATGATGTGAAGACAGGGGTAATATCATATAAGATAGCTGCTCATGCAGCTGATCTTGCAAAAGGTCACCCGCTATCTCAAGCTTGGGATGATGCACTAAGCAAGGCAAGATTTGAGTTCAGATGGATGGACCAATTCGCTTTGTCATTGGACCCCGTTACTGCAATGTCCTTCCACGATGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCGATGTGCGGGCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGGAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCTAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGTGGTGAGATCTACTTGCCAGAAAATTACATCAACTCTTTGAAGAGCCAAAG..........................................................................................................GAATATATAAAGCTCGAAAACTGGCTCAGAGATTTCTGAAGTGATCACAGCTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAGGTAAGTATCTAGTTTGGTATTGTTAAATAAACTGAGACAACAGCCTTGTTCAATTGAACTCTCCTTTGTTGGTAATAAG-AAATCGCGTATTTTCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287711" ref_strand="+" ref_description="SGN-E287711 [cLES-9-P17]">
      <seq>agagcatcttggtctgcctaatcgcgatgacgtgaagacaggtgtaatatcatataagatagctgctcatgcagctgatcttgcaaaaggtcacccgctatctcaagcctgggatgatgcacttagcaaggcaagatttgagttcagatggatggaccaattcgctttatcattggaccccgttactgcaatgtcctttcacgacgaaactttaccagccgatggggctaaagtggcacatttctgctctatgtgcgggcctaagttttgctccatgaaaataaccgaagatataagaaagtatgctgaaaatcatggttatggaaatgcagaggaagccattcagcagggcatggatgctatgagtgcagcgtttcaagctgcaaaaaaaaccattagtggggaacaacacggtgaggttggcggtgagatctacttgccagagaattacatcaactctttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81027" stop="82090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81327" g_stop="81790" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E287711" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81327" e_stop="81790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCATCTTGGTCTGCCTAATCGCGATGACGTGAAGACAGGTGTAATATCATATAAGATAGCTGCTCATGCAGCTGATCTTGCAAAAGGTCACCCGCTATCTCAAGCCTGGGATGATGCACTTAGCAAGGCAAGATTTGAGTTCAGATGGATGGACCAATTCGCTTTATCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCTATGTGCGGGCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGAAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAGAATTACATCAACTCTTTGA</genome_strand>
        <mrna_strand>AGAGCATCTTGGTCTGCCTAATCGCGATGACGTGAAGACAGGTGTAATATCATATAAGATAGCTGCTCATGCAGCTGATCTTGCAAAAGGTCACCCGCTATCTCAAGCCTGGGATGATGCACTTAGCAAGGCAAGATTTGAGTTCAGATGGATGGACCAATTCGCTTTATCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCTATGTGCGGGCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGAAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAGAATTACATCAACTCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687918" ref_strand="+" ref_description="SGN-E687918 [T3_tus_81_K05]">
      <seq>gtgaagacaggtgtaatatcatataagatagctgctcatgcagctgatcttgcacaaggtcacccgctatctcaagcctgggatgatgcacttagcaaggcaagatttgagttcagatggatggaccaattcgctttatcattggaccccgttactgcaatgtcctttcacgacgaaactttaccagccgatggggctaaagtggcacatttctgctctatgtgcgggcctaagttttgctccatgaaaataaccgaagatataagaaagtatgctgaaaatcatggttatggaaatgcagaggaagccattcagcagggcatggatgctatgagtgcagcgtttcaagctgcaaaaaaaaccattagtggggaacaacacggtgaggttggcggtgagatctacttgccagagaattacatcaactctttgaagagccaaaggaatgtgtaaagatcgaaaactggctcacagatttctgaagtgatcacaactccatcggccagtcaaggaggcggtagtaggagcctcattatcaagtgttagcttcaaatgctgactgatcaggctgagaaagtccctttgaacctgaacgggataattcctgcgtagggagcgtgcaatttcttttttcttgcttgcacagggatggcgattctccaaaatggttgaaaattcaaaattaatctgatcctgctctttgccaggaccagtttattcactgtctattcaagacaccatcttgtattgtttgtttttttggtgtcctgtaccgcattgaggcctgactaaatacagattcccgcactctgtaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81058" stop="82742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81358" g_stop="81800" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81801" i_stop="81906" i_length="106">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.413" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81907" g_stop="82009" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="546" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82010" i_stop="82172" i_length="163">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.479" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82173" g_stop="82442" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="816" r_length="270" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E687918" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81358" e_stop="81800"/>
          <exon e_start="81907" e_stop="82009"/>
          <exon e_start="82173" e_stop="82442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGACAGGTGTAATATCATATAAGATAGCTGCTCATGCAGCTGATCTTGCAAAAGGTCACCCGCTATCTCAAGCCTGGGATGATGCACTTAGCAAGGCAAGATTTGAGTTCAGATGGATGGACCAATTCGCTTTATCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCTATGTGCGGGCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGAAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAGAATTACATCAACTCTTTGAAGAGCCAAAGGTGAGTATTACATTCTGCAAGTCCTTTGAAGACACTCGTATAATGCAGAGTCTTTGTGTATTCCGATTAAAGCTCCTTTCACTTACCTTAAAGAATACAATTTCAGGAATGTGTAAAGATCGAAAACTGGCTCACAGATTTCTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAGGTAAGTATCTAGTTTGGTACTGTTAAATAAACTGAGACAACAGCCTTGTTCAATGAAACTCTCCTTTGTTAGTAATGAGAAAAACGCGTATTTTCTTGTGTTCAGTCTTTTATATCTTTTAAGTTTTATTGACACGAGAAAGCACCGGGGGTGTCTGTGTCAGCTTCAAATGCTGACTGATCAGGCTGAGAAAGTCCCTTTGAACCTGAACGGGATAATTCCTGCGTAGGGAGCGTGCAATTTCTTTTTTCTTGCTTGCACAGGGATGGCGATTCTCCAAAATGGTTGAAAATTCAAAATTAATCTGATCCTGCTCTTTGCCAGGACCAGTTTATTCACTGTCTATTCAAGACACCATCTTGTATTGTTTGTTTTTTTGGTGTCCTGTACCGCATTGAGGCCTGACTAAATACAGATTCCCGCACTCTGTACA</genome_strand>
        <mrna_strand>GTGAAGACAGGTGTAATATCATATAAGATAGCTGCTCATGCAGCTGATCTTGCACAAGGTCACCCGCTATCTCAAGCCTGGGATGATGCACTTAGCAAGGCAAGATTTGAGTTCAGATGGATGGACCAATTCGCTTTATCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCTATGTGCGGGCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGAAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAGAATTACATCAACTCTTTGAAGAGCCAAAG..........................................................................................................GAATGTGTAAAGATCGAAAACTGGCTCACAGATTTCTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAG...................................................................................................................................................................CTTCAAATGCTGACTGATCAGGCTGAGAAAGTCCCTTTGAACCTGAACGGGATAATTCCTGCGTAGGGAGCGTGCAATTTCTTTTTTCTTGCTTGCACAGGGATGGCGATTCTCCAAAATGGTTGAAAATTCAAAATTAATCTGATCCTGCTCTTTGCCAGGACCAGTTTATTCACTGTCTATTCAAGACACCATCTTGTATTGTTTGTTTTTTTGGTGTCCTGTACCGCATTGAGGCCTGACTAAATACAGATTCCCGCACTCTGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328406" ref_strand="+" ref_description="SGN-E328406 [cTOC-21-F17]">
      <seq>tgaagacaggtgtaatatcatataagatagctgctcatgcagctgatcttgcaaaaggtcacccgctatctcaagcctgggatgatgcacttagcaaggcaagatttgagttcagatggatggaccaattcgctttatcattggaccccgttactgcaatgtcctttcacgacgaaactttaccagccgatggggctaaagtggcacatttctgctctatgtgcgggcctaagttttgctccatgaaaataaccgaagatataagaaagtatgctgaaaatcatggttatggaaatgcagaggaagccattcagcagggcatggatgctatgagtgcagcgtttcaagctgcaaaaaaaaccattagtggggaacaacacggtgaggttggcggtgagatctacttgccagagaattacatcaactctttgaagagccaaaggaatgtgtaaagatcgaaaactggctcacagatttctgaagtgatcacaactccatcggccagtcaaggaggcggtagtaggagcctcattatcaagtgttagcttcaaatgctgactgatcaggctgagaaagtccctttgaacctgaacgggataattcctgcgtagggagcgtgcaatttcttttttcttgcttgcacagggatggcgattctccaaaatggttgaaaattcaaaattaatctgatcctgctctttgccaggaccagtttattcactgtctatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81059" stop="82658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81359" g_stop="81800" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81801" i_stop="81906" i_length="106">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.413" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81907" g_stop="82009" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="545" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82010" i_stop="82172" i_length="163">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.479" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82173" g_stop="82354" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="727" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E328406" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81359" e_stop="81800"/>
          <exon e_start="81907" e_stop="82009"/>
          <exon e_start="82173" e_stop="82354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGACAGGTGTAATATCATATAAGATAGCTGCTCATGCAGCTGATCTTGCAAAAGGTCACCCGCTATCTCAAGCCTGGGATGATGCACTTAGCAAGGCAAGATTTGAGTTCAGATGGATGGACCAATTCGCTTTATCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCTATGTGCGGGCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGAAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAGAATTACATCAACTCTTTGAAGAGCCAAAGGTGAGTATTACATTCTGCAAGTCCTTTGAAGACACTCGTATAATGCAGAGTCTTTGTGTATTCCGATTAAAGCTCCTTTCACTTACCTTAAAGAATACAATTTCAGGAATGTGTAAAGATCGAAAACTGGCTCACAGATTTCTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAGGTAAGTATCTAGTTTGGTACTGTTAAATAAACTGAGACAACAGCCTTGTTCAATGAAACTCTCCTTTGTTAGTAATGAGAAAAACGCGTATTTTCTTGTGTTCAGTCTTTTATATCTTTTAAGTTTTATTGACACGAGAAAGCACCGGGGGTGTCTGTGTCAGCTTCAAATGCTGACTGATCAGGCTGAGAAAGTCCCTTTGAACCTGAACGGGATAATTCCTGCGTAGGGAGCGTGCAATTTCTTTTTTCTTGCTTGCACAGGGATGGCGATTCTCCAAAATGGTTGAAAATTCAAAATTAATCTGATCCTGCTCTTTGCCAGGACCAGTTTATTCACTGTCTA</genome_strand>
        <mrna_strand>TGAAGACAGGTGTAATATCATATAAGATAGCTGCTCATGCAGCTGATCTTGCAAAAGGTCACCCGCTATCTCAAGCCTGGGATGATGCACTTAGCAAGGCAAGATTTGAGTTCAGATGGATGGACCAATTCGCTTTATCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCTATGTGCGGGCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGAAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAGAATTACATCAACTCTTTGAAGAGCCAAAG..........................................................................................................GAATGTGTAAAGATCGAAAACTGGCTCACAGATTTCTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAG...................................................................................................................................................................CTTCAAATGCTGACTGATCAGGCTGAGAAAGTCCCTTTGAACCTGAACGGGATAATTCCTGCGTAGGGAGCGTGCAATTTCTTTTTTCTTGCTTGCACAGGGATGGCGATTCTCCAAAATGGTTGAAAATTCAAAATTAATCTGATCCTGCTCTTTGCCAGGACCAGTTTATTCACTGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366330" ref_strand="+" ref_description="SGN-E366330 [cLPT-1-E9](-)">
      <seq>gatttgagttcagatggatggaccaattcgctttgtcattggaccccgttactgcaatgtcctttcacgacgaaactttaccagccgatggggctaaagtggcacatttctgctcgatgtgcggtcctaagttttgctccatgaaaataaccgaagatataaggaagtatgctgaaaatcatggttatggaaatgcagaggaagccattcagcagggcatggatgctatgagtgcagcgtttcaagctgcaaaaaaaaccattagtggggaacaacacggtgaggttggcggtgagatctacttgccagaaaattacatcaactctttgaagagccaaacgaatgtgtaaagatcgaaactggctcacagatttttgaagtgatcacaactccatcggccagtcaaggaggcggtagtaggagcctcattatcaagtattaggtaagtatctagtttggtactgttaaataaactgagacaaacagcttgtatcaatgaaactctcctttgttagtaatgagaaaacgcgtattttgttgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81161" stop="82407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81461" g_stop="81800" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81801" i_stop="81906" i_length="106">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.413" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81907" g_stop="82096" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="529" r_length="189" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="541" polyA_stop="558"/>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E366330" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81461" e_stop="81800"/>
          <exon e_start="81907" e_stop="82096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGAGTTCAGATGGATGGACCAATTCGCTTTATCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCTATGTGCGGGCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGAAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAGAATTACATCAACTCTTTGAAGAGCCAAAGGTGAGTATTACATTCTGCAAGTCCTTTGAAGACACTCGTATAATGCAGAGTCTTTGTGTATTCCGATTAAAGCTCCTTTCACTTACCTTAAAGAATACAATTTCAGGAATGTGTAAAGATCGAAAACTGGCTCACAGATTTCTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAGGTAAGTATCTAGTTTGGTACTGTTAAATAAACTGAGAC-AACAGCCTTGTTCAATGAAACTCTCCTTTGTTAGTAATGAGAAAAACGC</genome_strand>
        <mrna_strand>GATTTGAGTTCAGATGGATGGACCAATTCGCTTTGTCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCGATGTGCGGTCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGGAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAAAATTACATCAACTCTTTGAAGAGCCAAAC..........................................................................................................GAATGTGTAAAGATCG-AAACTGGCTCACAGATTTTTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTATTAGGTAAGTATCTAGTTTGGTACTGTTAAATAAACTGAGACAAACAGCTTGTATCAATGAAACTCTCCTTTGTTAGTAATGAG-AAAACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366347" ref_strand="+" ref_description="SGN-E366347 [cLPT-1-I1](-)">
      <seq>ttgtcattggaccccgttactgcaatgtcctttcacgacgaaactttaccagccgatggggctaaagtggcacatttctgctcgatgtgcggtcctaagttttgctccatgaaaataaccgaagatataaggaagtatgctgaaaatcatggttatggaaatgcagaggaagccattcagcagggcatggatgctatgagtgcagcgtttcaagctgcaaaaaaaaccattagtggggaacaacccggtgaggttggcggtgagatctacttgccagaaaattacatcaactctttgaagagccaaacgaatgtgtaaagatcgaaactggctcacagatttttgaagtgatcacaactccatcggccagtcaaggaggcggtagtaggagcctcattatcaagtattaggtaagtatctagtttggtactgttaaataaactgagacaaacagccttgttcaataaaactctcctttgttagtaatgagaaaacgcgtattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81193" stop="82404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81493" g_stop="81800" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81801" i_stop="81906" i_length="106">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.413" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81907" g_stop="82104" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="505" r_length="197" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E366347" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81493" e_stop="81800"/>
          <exon e_start="81907" e_stop="82104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCTATGTGCGGGCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGAAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAGAATTACATCAACTCTTTGAAGAGCCAAAGGTGAGTATTACATTCTGCAAGTCCTTTGAAGACACTCGTATAATGCAGAGTCTTTGTGTATTCCGATTAAAGCTCCTTTCACTTACCTTAAAGAATACAATTTCAGGAATGTGTAAAGATCGAAAACTGGCTCACAGATTTCTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAGGTAAGTATCTAGTTTGGTACTGTTAAATAAACTGAGAC-AACAGCCTTGTTCAATGAAACTCTCCTTTGTTAGTAATGAGAAAAACGCGTATTTTC</genome_strand>
        <mrna_strand>TTGTCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCGATGTGCGGTCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGGAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACCCGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAAAATTACATCAACTCTTTGAAGAGCCAAAC..........................................................................................................GAATGTGTAAAGATCG-AAACTGGCTCACAGATTTTTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTATTAGGTAAGTATCTAGTTTGGTACTGTTAAATAAACTGAGACAAACAGCCTTGTTCAATAAAACTCTCCTTTGTTAGTAATGAG-AAAACGCGTATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619091" ref_strand="+" ref_description="SGN-E619091 [69776]">
      <seq>gaaaatcatggttatggaaatgcagaggaagccattcagcagggcatggatgctatgagtgcagcgtttcaagctgctaaaaaaaccattagtggggaacaacacggtgaggttggtggtgagatctacttgccagaaaattacatcaactctttgaagagccaaaggaatatataaagctcgaaaactggctcagagatttctgaagtgatcacagctccatcggccagtcaaggaggcggtagtaggagcctcattatcaagtgttaggtaagtatctagtttggtattgttaaataaactgagacaacagccttgttcaattgaaactctcctttgttggtaataagaaatcgcgtattttcttgtcttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81334" stop="82391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81634" g_stop="81800" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81801" i_stop="81906" i_length="106">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.413" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81907" g_stop="82114" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="375" r_length="208" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E619091" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E619091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81634" e_stop="81800"/>
          <exon e_start="81907" e_stop="82114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAGAATTACATCAACTCTTTGAAGAGCCAAAGGTGAGTATTACATTCTGCAAGTCCTTTGAAGACACTCGTATAATGCAGAGTCTTTGTGTATTCCGATTAAAGCTCCTTTCACTTACCTTAAAGAATACAATTTCAGGAATGTGTAAAGATCGAAAACTGGCTCACAGATTTCTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAGGTAAGTATCTAGTTTGGTACTGTTAAATAAACTGAGACAACAGCCTTGTTCAA-TGAAACTCTCCTTTGTTAGTAATGAGAAAAACGCGTATTTTCTTGTGTTCAG</genome_strand>
        <mrna_strand>GAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCTAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGTGGTGAGATCTACTTGCCAGAAAATTACATCAACTCTTTGAAGAGCCAAAG..........................................................................................................GAATATATAAAGCTCGAAAACTGGCTCAGAGATTTCTGAAGTGATCACAGCTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAGGTAAGTATCTAGTTTGGTATTGTTAAATAAACTGAGACAACAGCCTTGTTCAATTGAAACTCTCCTTTGTTGGTAATAAG-AAATCGCGTATTTTCTTGTCTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599583" ref_strand="+" ref_description="SGN-E599583 [52575]">
      <seq>gccattcagcagggcatggatgctatgagtgcagcgtttcaagctgctaaagaaaccattagtggggaacaacacggtgaggttggtggtgagatctacttgccagaaaattacatcaactctttgaagagccaaaggaatatataaagctcgaaaactggctcagagatttctgaagtgatcacagctccatcggccagtcgaggaggcggtagtaggagcctcattatcaagtgttagcttcaaatgctgactgatcaggctgagaaagtccctttgaacctgaacgggataattcctgcgtagggagtgtgcaattttcttttcttgcttgcacagggatggcgattctccgaaatggttgaaaattcaaaattaagctgatcctgctcttcgccaggaccagtttattcaccatctattcaagacaccatcttgtattgtttgttttttaggtgtcctgtaccgcattgaggcccgactaaatatagattcgcgcactctgtacataacagagctcgaattcgacacctttggtttgatagtaaaggggtatttatcactcccatcacagacccttggttggtaaggcatagtccgtgttgccctctgaggacgcgacggggttacttacaatttgaccaaatttttctcatgggttacttactctagtctttggttggaccattgataacactcagtaatatgaattgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81364" stop="82897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81664" g_stop="81800" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81801" i_stop="81906" i_length="106">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.413" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81907" g_stop="82009" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="240" r_length="103" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82010" i_stop="82172" i_length="163">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.479" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82173" g_stop="82577" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="652" r_length="412" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E599583" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81664" e_stop="81800"/>
          <exon e_start="81907" e_stop="82009"/>
          <exon e_start="82173" e_stop="82577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAGAATTACATCAACTCTTTGAAGAGCCAAAGGTGAGTATTACATTCTGCAAGTCCTTTGAAGACACTCGTATAATGCAGAGTCTTTGTGTATTCCGATTAAAGCTCCTTTCACTTACCTTAAAGAATACAATTTCAGGAATGTGTAAAGATCGAAAACTGGCTCACAGATTTCTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAGGTAAGTATCTAGTTTGGTACTGTTAAATAAACTGAGACAACAGCCTTGTTCAATGAAACTCTCCTTTGTTAGTAATGAGAAAAACGCGTATTTTCTTGTGTTCAGTCTTTTATATCTTTTAAGTTTTATTGACACGAGAAAGCACCGGGGGTGTCTGTGTCAGCTTCAAATGCTGACTGATCAGGCTGAGAAAGTCCCTTTGAACCTGAACGGGATAATTCCTGCGTAGGGAGCGTGCAATTTCTTTTTTCTTGCTTGCACAGGGATGGCGATTCTCCAAAATGGTTGAAAATTCAAAATTAATCTGATCCTGCTCTTTGCCAGGACCAGTTTATTCACTGTCTATTCAAGACACCATCTTGTATTGTTTGTTTTTTTGGTGTCCTGTACCGCATTGAGGCCTGACTAAATACAGATTCCCGCACTCTGTACATAACAGAGCTCGAATTCGACACCTTT-GATTGGTAGTAAAGGGGTATTTATCACT-CCATCAC-GACCCTT-GTTGGTAAGGCATA-TTCGTGTATGCCTCTGA-GACGCGA-TTGGTTACTTACAA-TTGACCAATTTTCTC</genome_strand>
        <mrna_strand>GCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCTAAAGAAACCATTAGTGGGGAACAACACGGTGAGGTTGGTGGTGAGATCTACTTGCCAGAAAATTACATCAACTCTTTGAAGAGCCAAAG..........................................................................................................GAATATATAAAGCTCGAAAACTGGCTCAGAGATTTCTGAAGTGATCACAGCTCCATCGGCCAGTCGAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAG...................................................................................................................................................................CTTCAAATGCTGACTGATCAGGCTGAGAAAGTCCCTTTGAACCTGAACGGGATAATTCCTGCGTAGGGAGTGTGCAATTT-TCTTTTCTTGCTTGCACAGGGATGGCGATTCTCCGAAATGGTTGAAAATTCAAAATTAAGCTGATCCTGCTCTTCGCCAGGACCAGTTTATTCACCATCTATTCAAGACACCATCTTGTATTGTTTGTTTTTTAGGTGTCCTGTACCGCATTGAGGCCCGACTAAATATAGATTCGCGCACTCTGTACATAACAGAGCTCGAATTCGACACCTTTGGTTTGATAGTAAAGGGGTATTTATCACTCCCATCACAGACCCTTGGTTGGTAAGGCATAGTCCGTGTTGCCCTCTGAGGACGCGACGGGGTTACTTACAATTTGACCAAATTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E592909" ref_strand="+" ref_description="SGN-E592909 [36127]">
      <seq>ggttggtggtgagatctacttgccagaaaattacatcaactctttgaagagccaaaggaatatataaagctcgaaaactggctcagagatttctgaagtgatcacagctccatcggccagtcaaggaggcggtagtaggagcctcattatcaagtgttaggtaagtatctagtttggtattgttaaataaactgagacaacagccttgttcaattgaaactctcctttgttggtaataagaaatcgcgtattttcttgtcttcagtctcttatatctttaagttttattgacacgagaaagcaccgggggtgtctgtgtcagcttcaaatgctgactgatcaggctgagaaagtccctttgaacctgaacgggataattcctgcgtagggagtgtgcaattttcttttcttgcttgcacagggatggcgattctccgaaatggttgaaaattcaaaattaagctgatcctgctctttgccaggaccagtttattcaccatctattcaagacaccatcttgtattgtttgtttttttggtgtcctgtaccgcattgaggcccgactaaatatagattcgcgcactctgtacataacagagctcgaattcgacacctttggttgatagtaaaggggtatttatcactccatcacaaccctttgttggtaaggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81444" stop="82824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81744" g_stop="81800" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81801" i_stop="81906" i_length="106">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.413" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81907" g_stop="82524" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="674" r_length="617" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E592909" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81744" e_stop="81800"/>
          <exon e_start="81907" e_stop="82524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGGCGGTGAGATCTACTTGCCAGAGAATTACATCAACTCTTTGAAGAGCCAAAGGTGAGTATTACATTCTGCAAGTCCTTTGAAGACACTCGTATAATGCAGAGTCTTTGTGTATTCCGATTAAAGCTCCTTTCACTTACCTTAAAGAATACAATTTCAGGAATGTGTAAAGATCGAAAACTGGCTCACAGATTTCTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAGGTAAGTATCTAGTTTGGTACTGTTAAATAAACTGAGACAACAGCCTTGTTCAA-TGAAACTCTCCTTTGTTAGTAATGAGAAAAACGCGTATTTTCTTGTGTTCAGTCTTTTATATCTTTTAAGTTTTATTGACACGAGAAAGCACCGGGGGTGTCTGTGTCAGCTTCAAATGCTGACTGATCAGGCTGAGAAAGTCCCTTTGAACCTGAACGGGATAATTCCTGCGTAGGGAGCGTGCAATTTCTTTTTTCTTGCTTGCACAGGGATGGCGATTCTCCAAAATGGTTGAAAATTCAAAATTAATCTGATCCTGCTCTTTGCCAGGACCAGTTTATTCACTGTCTATTCAAGACACCATCTTGTATTGTTTGTTTTTTTGGTGTCCTGTACCGCATTGAGGCCTGACTAAATACAGATTCCCGCACTCTGTACATAACAGAGCTCGAATTCGACACCTTTGATTGGTAGTAAAGGGGTATTTATCACTCCATCACGACCC-TTGTTGGTAAGGCATA</genome_strand>
        <mrna_strand>GGTTGGTGGTGAGATCTACTTGCCAGAAAATTACATCAACTCTTTGAAGAGCCAAAG..........................................................................................................GAATATATAAAGCTCGAAAACTGGCTCAGAGATTTCTGAAGTGATCACAGCTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAGGTAAGTATCTAGTTTGGTATTGTTAAATAAACTGAGACAACAGCCTTGTTCAATTGAAACTCTCCTTTGTTGGTAATAAG-AAATCGCGTATTTTCTTGTCTTCAGTCTCTTATATC-TTTAAGTTTTATTGACACGAGAAAGCACCGGGGGTGTCTGTGTCAGCTTCAAATGCTGACTGATCAGGCTGAGAAAGTCCCTTTGAACCTGAACGGGATAATTCCTGCGTAGGGAGTGTGCAATTT-TCTTTTCTTGCTTGCACAGGGATGGCGATTCTCCGAAATGGTTGAAAATTCAAAATTAAGCTGATCCTGCTCTTTGCCAGGACCAGTTTATTCACCATCTATTCAAGACACCATCTTGTATTGTTTGTTTTTTTGGTGTCCTGTACCGCATTGAGGCCCGACTAAATATAGATTCGCGCACTCTGTACATAACAGAGCTCGAATTCGACACCTTTGGTTGATAGTAAAGGGGTATTTATCACTCCATCACAACCCTTTGTTGGTAAGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600509" ref_strand="+" ref_description="SGN-E600509 [53521]">
      <seq>agacactcgtatttgttaccttgcaacgcaatgcagagtctttgtgtattccaatttaagctcctatagcttaccttaatgaatacaatttcaggaatatataaagctcgaaaactggctcagagatttctgaagtgatcacagctccatcggccagtcaaggaggcggtagtaggagcctcattatcaagtgttaggtaagtatctagtttggtattgttaaataaactgagacaacagccttgttcaatcgaaactctcctttgttggtaataagaaatcgcgtattttcttgtcttcagtctcttatatctttaagttttattgacacgagaaagcaccgggggtgtctgtgtcagcttcaaatgctgactgatcaggctgagaaagtccctttgaacctgaacgggataattcctgcgtagggagtgtgcaattttcttttcttgcttgcacagggatggcgattctccgaaatggttgaaaattcgaaattaagctgatcctgctcttcgccaggaccagtttattcaccatctattcaagacaccatcttgtattgtttgtatccatggtgtcctgtaccgcattgaggcccgactaactatagattcgcgcactctgtacataacagagctcgaattcgacacctttggttgatagtaaaggggtatttatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81542" stop="82795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81842" g_stop="82495" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="681" r_length="652" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E600509" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E600509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81842" e_stop="82495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCAGAGTCTTTGTGTATTCCGATTAAAGCTCCTTTCACTTACCTTAAAGAATACAATTTCAGGAATGTGTAAAGATCGAAAACTGGCTCACAGATTTCTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAGGTAAGTATCTAGTTTGGTACTGTTAAATAAACTGAGACAACAGCCTTGTTCAAT-GAAACTCTCCTTTGTTAGTAATGAGAAAAACGCGTATTTTCTTGTGTTCAGTCTTTTATATCTTTTAAGTTTTATTGACACGAGAAAGCACCGGGGGTGTCTGTGTCAGCTTCAAATGCTGACTGATCAGGCTGAGAAAGTCCCTTTGAACCTGAACGGGATAATTCCTGCGTAGGGAGCGTGCAATTTCTTTTTTCTTGCTTGCACAGGGATGGCGATTCTCCAAAATGGTTGAAAATTCAAAATTAATCTGATCCTGCTCTTTGCCAGGACCAGTTTATTCACTGTCTATTCAAGACACCATCTTGTATTGTTTGTTTTTTTGGTGTCCTGTACCGCATTGAGGCCTGACTAAATACAGATTCCCGCACTCTGTACATAACAGAGCTCGAATTCGACACCTTTGATTGGTAGTAAAGGGGTATTTATCAC</genome_strand>
        <mrna_strand>AATGCAGAGTCTTTGTGTATTCCAATTTAAGCTCCTATAGCTTACCTTAATGAATACAATTTCAGGAATATATAAAGCTCGAAAACTGGCTCAGAGATTTCTGAAGTGATCACAGCTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAGGTAAGTATCTAGTTTGGTATTGTTAAATAAACTGAGACAACAGCCTTGTTCAATCGAAACTCTCCTTTGTTGGTAATAAG-AAATCGCGTATTTTCTTGTCTTCAGTCTCTTATATC-TTTAAGTTTTATTGACACGAGAAAGCACCGGGGGTGTCTGTGTCAGCTTCAAATGCTGACTGATCAGGCTGAGAAAGTCCCTTTGAACCTGAACGGGATAATTCCTGCGTAGGGAGTGTGCAATTT-TCTTTTCTTGCTTGCACAGGGATGGCGATTCTCCGAAATGGTTGAAAATTCGAAATTAAGCTGATCCTGCTCTTCGCCAGGACCAGTTTATTCACCATCTATTCAAGACACCATCTTGTATTGTTTGTATCCATGGTGTCCTGTACCGCATTGAGGCCCGACTAACTATAGATTCGCGCACTCTGTACATAACAGAGCTCGAATTCGACACCTTTGGTTGATAGTAAAGGGGTATTTATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335976" ref_strand="+" ref_description="SGN-E335976 [cTOE-6-F23]">
      <seq>tctgtgtcagcttcaaatgctgactgatcaggctgagaaagtccctttgaacctgaacgggataattcctgcgtagggagcgtgcaatttcttttttcttgcttgcacagggatggcgattctccaaaatggttgaaaattcaaaattaatctgatcctgctctttgccaggaccagtttattcactgtctattcaagacaccatcttgtattgtttgtttttttggtgtcctgtaccgcattgaggcctgactaaatacagattcccgcactctgtacataacagagctcgaattcgacacctttgattggtagtaaaggggtatttatcactccatcacgacccttgttggtaaggcatattcgtgtatgcctctgagacgcgattggttacttacaattgaccaattttctcatggttagtctagctttggttggactattgaaacattcagttatatgaatgactcaattgcatatataccttcatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81863" stop="82956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82163" g_stop="82656" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E335976" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82163" e_stop="82656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTGTCAGCTTCAAATGCTGACTGATCAGGCTGAGAAAGTCCCTTTGAACCTGAACGGGATAATTCCTGCGTAGGGAGCGTGCAATTTCTTTTTTCTTGCTTGCACAGGGATGGCGATTCTCCAAAATGGTTGAAAATTCAAAATTAATCTGATCCTGCTCTTTGCCAGGACCAGTTTATTCACTGTCTATTCAAGACACCATCTTGTATTGTTTGTTTTTTTGGTGTCCTGTACCGCATTGAGGCCTGACTAAATACAGATTCCCGCACTCTGTACATAACAGAGCTCGAATTCGACACCTTTGATTGGTAGTAAAGGGGTATTTATCACTCCATCACGACCCTTGTTGGTAAGGCATATTCGTGTATGCCTCTGAGACGCGATTGGTTACTTACAATTGACCAATTTTCTCATGGTTAGTCTAGCTTTGGTTGGACTATTGAAACATTCAGTAATATGAATGACTCAATTGCATATATACCTTCATATTT</genome_strand>
        <mrna_strand>TCTGTGTCAGCTTCAAATGCTGACTGATCAGGCTGAGAAAGTCCCTTTGAACCTGAACGGGATAATTCCTGCGTAGGGAGCGTGCAATTTCTTTTTTCTTGCTTGCACAGGGATGGCGATTCTCCAAAATGGTTGAAAATTCAAAATTAATCTGATCCTGCTCTTTGCCAGGACCAGTTTATTCACTGTCTATTCAAGACACCATCTTGTATTGTTTGTTTTTTTGGTGTCCTGTACCGCATTGAGGCCTGACTAAATACAGATTCCCGCACTCTGTACATAACAGAGCTCGAATTCGACACCTTTGATTGGTAGTAAAGGGGTATTTATCACTCCATCACGACCCTTGTTGGTAAGGCATATTCGTGTATGCCTCTGAGACGCGATTGGTTACTTACAATTGACCAATTTTCTCATGGTTAGTCTAGCTTTGGTTGGACTATTGAAACATTCAGTTATATGAATGACTCAATTGCATATATACCTTCATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715025" ref_strand="+" ref_description="SGN-E715025 [FB13AE01]">
      <seq>caatggtatcacttctctcaccacttatactaaagttagtatattttcttaaaaatatatatataattgtgtggtgttcgagtcagtttgcgttaaatcatctttgatttcgagatgtcgtcaaggggatgtgaaggagtgagtgtggtgaagccagagatgaccaagaatacaaagatagcaagcaagttccaaaagcaaaactctacaaagagtgttgttgatggtactacaaataatgcaaggagtagcacaaccacaacaagttgtagcttcaagatgcctaatagatcccaattatcccctattaagattttcaaacaacttggaggaaaaatggttgcacttataaagatggtatcttcttcaaagagaagttgtaggaaagttactaattcgtcagagagagcaacaatttctgctaagccaaccgctaccttaaatattgactcacatagggcggaggcaattgatgattgtattcaattcatcaacttgtcttcttctttgcctagatctaattcagtgtcataagagatcggagaatctcttgataagaagcgttttatcgtgttatttatattaattgaccacttttttgtggttttgtatctataagttgattatatttttaaaattagacgtgtgatttgaatagaataattattttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="-" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95524" stop="73739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95224" g_stop="94550" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="673" r_length="673" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94549" i_stop="93495" i_length="1055">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.937" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93494" g_stop="93484" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="684" r_length="11" r_score="0.727"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="-" ref_id="SGN-E715025" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95224" e_stop="94550"/>
          <exon e_start="93494" e_stop="93484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGTATCACTTCTCTCACCACTTATACTAAAGTTAGTATATTTTCTTAAAAATATATATATAATTGTGTGGTGTTCGAGTCAGTTTGCGTTAAATCATCTTTGATTTCGAGATGTCGGCAAGAGGATGTGAAGGAGTGAGCGTGGTGAAGCCAGAGATGACCAAGAATACAAAGATAGCAAGCAAGTTTCAAAAGCAAAACTCTACAAAGAGTGTTGTTGATGGTACTACAAATAATGCAAGGAGTACCACCACCACAACAAGTTGTAGCTTCAAGATGCCTAATAGATCCCAATTATCCCCTATTAAGATTTTCAAACAACTTGGAGGAAAAATGGTTGCACTTATGAAGATGGTATCTTCTTCAAAGAGAAGTTGTAGGAAAGTTACTAATTCGTCAGAGAGAGCAACAATTTCTGCTAAGCCAACCGCTACCTTAAATATTGACTCACATAGAGCGGAGGCAATTGATGATTGTATTCAATTCATCAACTTGTCTTCTTCTTTGCCTAGATCTAATTCAGTGTCATAAGAGATCGGAAAAAATCTCTTGATAAGAAGCGTTTTATCGTGTTATTTATATTAATTGACCACTTTTGTATGGTTTTGTATCTATAAGTAGATTATATTTTTAACATTAGACGTGTGATTTGAATAGAATAATTATTTTGAACGACTTTCTAGTCAATATCCACTATCAAGGTCACTATTAAATTTCATGTCGAGTCAAATGTTGTCACATAAAATGAAACGGAGAGAGTACCCTTTTAATCGAATTTTGATCTTAGTCGTTTAATTTAACCTATAACTGCGATGAGTTTGTAAGGATGGAGTACTACCAATTGAGCTATATTCTCGACCCAAACAAAGCATATATTCACATGCTTCTTTTACTCTTTTTCCCAACACAATCGTACTTATATGTGTGATAATTATATCGAAATATGTACAAGTTGACCTGATACACATTCTAACTAATTATTGTATGCACCAGCAAGTTAATTCCCATGTCTAACCCCAATAATGGAAGTCATGATTGTTGTCACTAGAATGCTAATTTCTGCATTAAGAAAGTTCTATTTGGGTATATTCTTGCAACTACTTTTTAGTGTCCAATTTTCCAACTCATTACTTTTGCTTTATTGTTATGTAGTAGTAGTTTGTTAAGTACTCACTAAAGTTATTGTGTTCAAGAGCTTTTTGCTCGTGTTAATAATTTAAGACTCGTAAATATAGATGAATTCAAGATTTGAAGTTTATGAGTTTCTACAATGACTTCAAATTAATATAACAATAACATACTCAGTGAAATCTCATTAAATAGAATCTGAAGAGAGTGTACGAGACCTACAGAGACGATTCAAGATTTGAAGTTTATGAGTTTCTACAATGACTTTAAATTAATACAACAATAACATACTCAGTAAAATCTCATTAAATAGAATCCGAAGAGAGTGTACTAGACCTACAGGCTACATGATATGTGTTAGATCCGCCACATTGTAACGTACAAACAATTACCATTTGACCATTAAAAATGTATAATTACATATAAGCAAAATACTCGACTTTAGTATTTCCATATACTAAAGTGAGTATTAACGAATACGATTTGGCAACATGTACAAATGTACTAAACTTTTAGTAACATATAACTTAGCATTTGTTTTAAAAATTTTATTAAAAATTCTGAATCCGTAACTATACTGTCTCGATGGGTTATTGTAGCAAATAATAAA</genome_strand>
        <mrna_strand>CAATGGTATCACTTCTCTCACCACTTATACTAAAGTTAGTATATTTTCTTAAAAATATATATATAATTGTGTGGTGTTCGAGTCAGTTTGCGTTAAATCATCTTTGATTTCGAGATGTCGTCAAGGGGATGTGAAGGAGTGAGTGTGGTGAAGCCAGAGATGACCAAGAATACAAAGATAGCAAGCAAGTTCCAAAAGCAAAACTCTACAAAGAGTGTTGTTGATGGTACTACAAATAATGCAAGGAGTAGCACAACCACAACAAGTTGTAGCTTCAAGATGCCTAATAGATCCCAATTATCCCCTATTAAGATTTTCAAACAACTTGGAGGAAAAATGGTTGCACTTATAAAGATGGTATCTTCTTCAAAGAGAAGTTGTAGGAAAGTTACTAATTCGTCAGAGAGAGCAACAATTTCTGCTAAGCCAACCGCTACCTTAAATATTGACTCACATAGGGCGGAGGCAATTGATGATTGTATTCAATTCATCAACTTGTCTTCTTCTTTGCCTAGATCTAATTCAGTGTCATAAGAGATCGG--AGAATCTCTTGATAAGAAGCGTTTTATCGTGTTATTTATATTAATTGACCACTTTTTTGTGGTTTTGTATCTATAAGTTGATTATATTTTTAAAATTAGACGTGTGATTTGAATAGAATAATTATTTTGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538890" ref_strand="+" ref_description="SGN-E538890 [TUS-58-F21]">
      <seq>ttgatttcgagatgtcggcaagaggatgtgaaggagtgagcgtggtgaagccagagatgaccaagaatacaaagatagcaagcaagtttcaaaagcaaaactctacaaagagtgttgttgatggtactacaaataatgcaaggagtaccaccaccacaacaagttgtagcttcaagatgcctaatagatcccaattatcccctattaagattttcaaacaacttggaggaaaaatggttgcacttatgaagatggtatcttcttcaaagagaagttgtaggaaagttactaattcgtcagagagagcaacaatttctgctaagccaaccgctaccttaaatattgactcacatagagcggaggcaattgatgattgtattcaattcatcaacttgtcttcttctttgcctagatctaattcagtgtcataagagatcggaaaaaatctcttgataagaagcgttttatcgtgttatttatattaattgaccacttttgtatggttttgtatctataagtagattatatttttaacattagacgtgtgatttgaatagaataattattttgaacgannnnatataaaaggaatgacaaaatggacggaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="-" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95421" stop="94247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95121" g_stop="94540" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="-" ref_id="SGN-E538890" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95121" e_stop="94540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTCGAGATGTCGGCAAGAGGATGTGAAGGAGTGAGCGTGGTGAAGCCAGAGATGACCAAGAATACAAAGATAGCAAGCAAGTTTCAAAAGCAAAACTCTACAAAGAGTGTTGTTGATGGTACTACAAATAATGCAAGGAGTACCACCACCACAACAAGTTGTAGCTTCAAGATGCCTAATAGATCCCAATTATCCCCTATTAAGATTTTCAAACAACTTGGAGGAAAAATGGTTGCACTTATGAAGATGGTATCTTCTTCAAAGAGAAGTTGTAGGAAAGTTACTAATTCGTCAGAGAGAGCAACAATTTCTGCTAAGCCAACCGCTACCTTAAATATTGACTCACATAGAGCGGAGGCAATTGATGATTGTATTCAATTCATCAACTTGTCTTCTTCTTTGCCTAGATCTAATTCAGTGTCATAAGAGATCGGAAAAAATCTCTTGATAAGAAGCGTTTTATCGTGTTATTTATATTAATTGACCACTTTTGTATGGTTTTGTATCTATAAGTAGATTATATTTTTAACATTAGACGTGTGATTTGAATAGAATAATTATTTTGAACGACTTTCTA</genome_strand>
        <mrna_strand>TTGATTTCGAGATGTCGGCAAGAGGATGTGAAGGAGTGAGCGTGGTGAAGCCAGAGATGACCAAGAATACAAAGATAGCAAGCAAGTTTCAAAAGCAAAACTCTACAAAGAGTGTTGTTGATGGTACTACAAATAATGCAAGGAGTACCACCACCACAACAAGTTGTAGCTTCAAGATGCCTAATAGATCCCAATTATCCCCTATTAAGATTTTCAAACAACTTGGAGGAAAAATGGTTGCACTTATGAAGATGGTATCTTCTTCAAAGAGAAGTTGTAGGAAAGTTACTAATTCGTCAGAGAGAGCAACAATTTCTGCTAAGCCAACCGCTACCTTAAATATTGACTCACATAGAGCGGAGGCAATTGATGATTGTATTCAATTCATCAACTTGTCTTCTTCTTTGCCTAGATCTAATTCAGTGTCATAAGAGATCGGAAAAAATCTCTTGATAAGAAGCGTTTTATCGTGTTATTTATATTAATTGACCACTTTTGTATGGTTTTGTATCTATAAGTAGATTATATTTTTAACATTAGACGTGTGATTTGAATAGAATAATTATTTTGAACGANNNNATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278945" ref_strand="+" ref_description="SGN-E278945 [cLER-2-M12]">
      <seq>tgatttcgagatgtcggcaagaggatgtgaaggagtgagcgtggtgaagccagagatgaccaagaatacaaagatagcaagcaagtttcaaaagcaaaactctacaaagagtgttgttgatggtactacaaataatgcaaggagtaccaccaccacaacaagttgtagcttcaagatgcctaatagatcccaattatcccctattaagattttcaaacaacttggaggaaaaatggttgcacttatgaagatggtatcttcttcaaagagaagttgtaggaaagttactaattcgtcagagagagcaacaatttctgctaagccaaccgctaccttaaatattgactcacatagagcggaggcaattgatgattgtattcaattcatcaacttgtcttcttctttgcctagatctaattcagtgtcataagagatcggaaaaaatctcttgataagaagcgttttatcgtgttatttatattaattgaccacttttgtatggttttgtatctataagtagattatatttttaacattagacgtgtgatttgaatagaataattattttgaacgaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="-" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95420" stop="94247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95120" g_stop="94542" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="-" ref_id="SGN-E278945" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95120" e_stop="94542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTCGAGATGTCGGCAAGAGGATGTGAAGGAGTGAGCGTGGTGAAGCCAGAGATGACCAAGAATACAAAGATAGCAAGCAAGTTTCAAAAGCAAAACTCTACAAAGAGTGTTGTTGATGGTACTACAAATAATGCAAGGAGTACCACCACCACAACAAGTTGTAGCTTCAAGATGCCTAATAGATCCCAATTATCCCCTATTAAGATTTTCAAACAACTTGGAGGAAAAATGGTTGCACTTATGAAGATGGTATCTTCTTCAAAGAGAAGTTGTAGGAAAGTTACTAATTCGTCAGAGAGAGCAACAATTTCTGCTAAGCCAACCGCTACCTTAAATATTGACTCACATAGAGCGGAGGCAATTGATGATTGTATTCAATTCATCAACTTGTCTTCTTCTTTGCCTAGATCTAATTCAGTGTCATAAGAGATCGGAAAAAATCTCTTGATAAGAAGCGTTTTATCGTGTTATTTATATTAATTGACCACTTTTGTATGGTTTTGTATCTATAAGTAGATTATATTTTTAACATTAGACGTGTGATTTGAATAGAATAATTATTTTGAACGACTTTC</genome_strand>
        <mrna_strand>TGATTTCGAGATGTCGGCAAGAGGATGTGAAGGAGTGAGCGTGGTGAAGCCAGAGATGACCAAGAATACAAAGATAGCAAGCAAGTTTCAAAAGCAAAACTCTACAAAGAGTGTTGTTGATGGTACTACAAATAATGCAAGGAGTACCACCACCACAACAAGTTGTAGCTTCAAGATGCCTAATAGATCCCAATTATCCCCTATTAAGATTTTCAAACAACTTGGAGGAAAAATGGTTGCACTTATGAAGATGGTATCTTCTTCAAAGAGAAGTTGTAGGAAAGTTACTAATTCGTCAGAGAGAGCAACAATTTCTGCTAAGCCAACCGCTACCTTAAATATTGACTCACATAGAGCGGAGGCAATTGATGATTGTATTCAATTCATCAACTTGTCTTCTTCTTTGCCTAGATCTAATTCAGTGTCATAAGAGATCGGAAAAAATCTCTTGATAAGAAGCGTTTTATCGTGTTATTTATATTAATTGACCACTTTTGTATGGTTTTGTATCTATAAGTAGATTATATTTTTAACATTAGACGTGTGATTTGAATAGAATAATTATTTTGAACGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538888" ref_strand="+" ref_description="SGN-E538888 [TUS-58-F21](-)">
      <seq>ttgatttcgagatgtcggcaagaggatgtgaaggagtgaccgtggtgaacccagagatggccaagaatacaaagatagcaagcaagtttcaaaagcaaaactctacaaagagtgttgttgatggtactacaaataatgcaaggagtacccccaccacaacaagttgtagcttcaagatgcctaatagatcccaattatcccctattaagattttcaaacaacttggaggaaaaatggttgcacttatgaagatggtatttttttcaaagagaagttgtaggaaagttactaattcgtcagagagagcaacaatttttgttaagccaaccgctaccttaaatattgactcacatagagcggaggcaattgatgattgtattcaattcatcaacttgtctttttctttgcctagatctaattcagtgtcataagagatcggaaaaaatctcttgataagaagcgttttatcgtgttatttatattaattgaccacttttgtatggttttgtatctataagtagattatatttttaacattagacgtgtgatttgaatagaataattattttggccgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="-" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95421" stop="94247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95121" g_stop="94552" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="575" polyA_stop="613"/>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="-" ref_id="SGN-E538888" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95121" e_stop="94552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTCGAGATGTCGGCAAGAGGATGTGAAGGAGTGAGCGTGGTGAAGCCAGAGATGACCAAGAATACAAAGATAGCAAGCAAGTTTCAAAAGCAAAACTCTACAAAGAGTGTTGTTGATGGTACTACAAATAATGCAAGGAGTACCACCACCACAACAAGTTGTAGCTTCAAGATGCCTAATAGATCCCAATTATCCCCTATTAAGATTTTCAAACAACTTGGAGGAAAAATGGTTGCACTTATGAAGATGGTATCTTCTTCAAAGAGAAGTTGTAGGAAAGTTACTAATTCGTCAGAGAGAGCAACAATTTCTGCTAAGCCAACCGCTACCTTAAATATTGACTCACATAGAGCGGAGGCAATTGATGATTGTATTCAATTCATCAACTTGTCTTCTTCTTTGCCTAGATCTAATTCAGTGTCATAAGAGATCGGAAAAAATCTCTTGATAAGAAGCGTTTTATCGTGTTATTTATATTAATTGACCACTTTTGTATGGTTTTGTATCTATAAGTAGATTATATTTTTAACATTAGACGTGTGATTTGAATAGAATAATTATTTTG</genome_strand>
        <mrna_strand>TTGATTTCGAGATGTCGGCAAGAGGATGTGAAGGAGTGACCGTGGTGAACCCAGAGATGGCCAAGAATACAAAGATAGCAAGCAAGTTTCAAAAGCAAAACTCTACAAAGAGTGTTGTTGATGGTACTACAAATAATGCAAGGAGTACCCCCACCACAACAAGTTGTAGCTTCAAGATGCCTAATAGATCCCAATTATCCCCTATTAAGATTTTCAAACAACTTGGAGGAAAAATGGTTGCACTTATGAAGATGGTATTTTTTTCAAAGAGAAGTTGTAGGAAAGTTACTAATTCGTCAGAGAGAGCAACAATTTTTGTTAAGCCAACCGCTACCTTAAATATTGACTCACATAGAGCGGAGGCAATTGATGATTGTATTCAATTCATCAACTTGTCTTTTTCTTTGCCTAGATCTAATTCAGTGTCATAAGAGATCGGAAAAAATCTCTTGATAAGAAGCGTTTTATCGTGTTATTTATATTAATTGACCACTTTTGTATGGTTTTGTATCTATAAGTAGATTATATTTTTAACATTAGACGTGTGATTTGAATAGAATAATTATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392678" ref_strand="+" ref_description="SGN-E392678 [TUS-36-H17]">
      <seq>gaataatatagatttgtgtatctgaattcataaattcaaaaatataatattacgaaaccttaaaaattaaactcataaatttttaatttttaatccggtctctctttgcatagcatcattttgccatgtatatataaaaattacaccatatagaaagtatataatatatgttgcaaaatgaaccaaaattttggaagaaacaaattcttttttactaataatagaaacattggagttgtcaaatatgctccaaaacgaaagggcaatattttgtttattttgtccatatacatgaatgacatgataggttttatggtacaaaacaaaaattgagtatgtcatgctcaaattatagtttctcattttatttacatttctcatcaatattttgtatttgtctcgttaaatcttgattaacgtcagaaactatcacaaaatatcacattaaggtaaaaccttctctagctataacaaaggtaacttcatattcgcgctcgaaattgacctctcgctttattatattcctatcatttttttcttataatattcgtaaattccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="107297" stop="108457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107597" g_stop="108157" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E392678" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107597" e_stop="108157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAATATAGATTTGTGTATCTGAATTCATAAATTCAAAAATATAATATTACGAAACCTTAAAAATTAAACTCATAAATTTTTAATTTTTAATCCGGTCTCTCTTTGCATAGCATCATTTTGCCATGTATATATAAAAATTACACCATATAGAAAGTATATAATATATGTTGCAAAATGAACCAAAATTTTGGAAGAAACAAATTCTTTTTTACTAATAATAGAAACATTGGAGTTGTCAAATATGCTCCAAAACGAAAGGGCAATATTTTGTTTATTTTGTCCATATACATGAATGACATGATAGGTTTTATGGTACAAAACAAAAATTGAGTATGTCATGCTCAAATTATAGTTTCTCATTTTATTTACATTTCTCATCGATATTTTGTATTTGTCTCGTTAAATCTTGATTAACGTCAGAAACTATCACAAAATATCACATTAAGGTAAAACCTTCTCTAGCTATAACAAAGGTAACTTCATATTCAGGCTCGAAATTGACCTCTCGCTTTATTATATTCCTATCATTTTTTTCTTTTTATATTCTTATATTCCTAA</genome_strand>
        <mrna_strand>GAATAATATAGATTTGTGTATCTGAATTCATAAATTCAAAAATATAATATTACGAAACCTTAAAAATTAAACTCATAAATTTTTAATTTTTAATCCGGTCTCTCTTTGCATAGCATCATTTTGCCATGTATATATAAAAATTACACCATATAGAAAGTATATAATATATGTTGCAAAATGAACCAAAATTTTGGAAGAAACAAATTCTTTTTTACTAATAATAGAAACATTGGAGTTGTCAAATATGCTCCAAAACGAAAGGGCAATATTTTGTTTATTTTGTCCATATACATGAATGACATGATAGGTTTTATGGTACAAAACAAAAATTGAGTATGTCATGCTCAAATTATAGTTTCTCATTTTATTTACATTTCTCATCAATATTTTGTATTTGTCTCGTTAAATCTTGATTAACGTCAGAAACTATCACAAAATATCACATTAAGGTAAAACCTTCTCTAGCTATAACAAAGGTAACTTCATATTCGCGCTCGAAATTGACCTCTCGCTTTATTATATTCCTATCATTTTTTTCTTATAATATTCGTAAATTCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367983" ref_strand="+" ref_description="SGN-E367983 [TUS-22-P5]">
      <seq>aataatatagatttgtgtatctgaattcataaattcaaaaatataatattacgaaaccttaaaaattaaactcataaatttttaatttttaatccggtctctctttgcatagcatcattttgccatgtatatataaaaattacaccatatagaaagtatataatatatgttgcaaaatgaaccaaaattttggaagaaacaaattcttttttactaataatagaaacattggagttgtcaaatatgctccaaaacgaaagggcaatattttgtttattttgtccatatacatgaatgacatgataggttttatggtacaaaacaaaaattgagtatgtcatgctcaaattatagtttctcattttatttacatttctcatcgatattttgtatttgtctcgttaaatcttgattaacgtcagaaactatcacaaaatatcacattaaggtaaaaccttctctagctataacaaaggtaacttcatattcaggctcgaaattgacctctcgctttattatattcctatcatttttttctttttatattcttatattcctaatatctcttgcaggatggaacctcacattacatgaaagggattattctttgtcttgcctattgtgtcattggtgctttgtttctttttcataaaatccaatcaatattgaaaactattcatctgggatcatgtcatcttaaccaagttcattcagcaacgtgatgaaccatcagaaagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="107298" stop="109062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107598" g_stop="108260" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108261" i_stop="108683" i_length="423">
            <donor d_prob="0.939" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108684" g_stop="108762" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="741" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E367983" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107598" e_stop="108260"/>
          <exon e_start="108684" e_stop="108762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATATAGATTTGTGTATCTGAATTCATAAATTCAAAAATATAATATTACGAAACCTTAAAAATTAAACTCATAAATTTTTAATTTTTAATCCGGTCTCTCTTTGCATAGCATCATTTTGCCATGTATATATAAAAATTACACCATATAGAAAGTATATAATATATGTTGCAAAATGAACCAAAATTTTGGAAGAAACAAATTCTTTTTTACTAATAATAGAAACATTGGAGTTGTCAAATATGCTCCAAAACGAAAGGGCAATATTTTGTTTATTTTGTCCATATACATGAATGACATGATAGGTTTTATGGTACAAAACAAAAATTGAGTATGTCATGCTCAAATTATAGTTTCTCATTTTATTTACATTTCTCATCGATATTTTGTATTTGTCTCGTTAAATCTTGATTAACGTCAGAAACTATCACAAAATATCACATTAAGGTAAAACCTTCTCTAGCTATAACAAAGGTAACTTCATATTCAGGCTCGAAATTGACCTCTCGCTTTATTATATTCCTATCATTTTTTTCTTTTTATATTCTTATATTCCTAATATCTCTTGCAGGATGGAACCTCACATTACATGAAAGGGATTATTCTTTGTCTTGCCTATTGTGTCATTGGTGC-TTGTTTCTTTTTCCATAAAATTCCAATCAGTAAGTCATTTTTATTTTTTGTTTTCTATACAAACCCTATTAATTATATTAAATAATATACTTATATACATCCTTTGAGAAAACATTTTACTTGTACACGCACAAGTAAACACTTAATTAAACTTGTATAAAACTAAATATATAGACACATTCGTCCAACATGACACTCTACATGATAATTTTGTATTCTACGTGGCGTCCTATATGTATTATGTCATGAAGGACACGTGTGTCTACTTGTTTAAAGTTGGAGGGCATAGCTGTCCGCTGAAGCCAAGTTACATGTTTATGTGTTATGCCTAAAGGCTAAAAGTTACATGTAACTATTTTTATACATGATTTACATTTTCAGTTTATGAAAGTTAAATGTTAAATCCTCTGACAAATTGCTAACTCTTGTTTTGGTGCGTCGGGTGTTGTTAGATATTGAAAACTATTCATCTGGGATCATGTCATCTTAACCAAGTTCATTCAGCAACGTGATGAACCATCAGAAAGAAAT</genome_strand>
        <mrna_strand>AATAATATAGATTTGTGTATCTGAATTCATAAATTCAAAAATATAATATTACGAAACCTTAAAAATTAAACTCATAAATTTTTAATTTTTAATCCGGTCTCTCTTTGCATAGCATCATTTTGCCATGTATATATAAAAATTACACCATATAGAAAGTATATAATATATGTTGCAAAATGAACCAAAATTTTGGAAGAAACAAATTCTTTTTTACTAATAATAGAAACATTGGAGTTGTCAAATATGCTCCAAAACGAAAGGGCAATATTTTGTTTATTTTGTCCATATACATGAATGACATGATAGGTTTTATGGTACAAAACAAAAATTGAGTATGTCATGCTCAAATTATAGTTTCTCATTTTATTTACATTTCTCATCGATATTTTGTATTTGTCTCGTTAAATCTTGATTAACGTCAGAAACTATCACAAAATATCACATTAAGGTAAAACCTTCTCTAGCTATAACAAAGGTAACTTCATATTCAGGCTCGAAATTGACCTCTCGCTTTATTATATTCCTATCATTTTTTTCTTTTTATATTCTTATATTCCTAATATCTCTTGCAGGATGGAACCTCACATTACATGAAAGGGATTATTCTTTGTCTTGCCTATTGTGTCATTGGTGCTTTGTTTCTTTTT-CATAAAA-TCCAATCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGAAAACTATTCATCTGGGATCATGTCATCTTAACCAAGTTCATTCAGCAACGTGATGAACCATCAGAAAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236268" ref_strand="+" ref_description="SGN-E236268 [cLED-20-G9]">
      <seq>aataatatagatttgtgtatctgaattcataaattcaaaaatataatattacgaaaccttaaaaattaaactcataaatttttaatttttaatccggtctctctttgcatagcatcattttgccatgtatatataaaaattacaccatatagaaagtatataatatatgttgcaaaatgaaccaaaattttggaagaaacaaattcttttttactaataatagaaacattggagttgtcaaatatgctccaaaacgaaagggcaatattttgtttattttgtccatatacatgaatgacatgataggttttatggtacaaaacaaaaattgagtatgtcatgctcaaattatagtttctcattttatttacatttctcatcgatattttgtatttgtctcgttaaatcttgattaacgtcagaaactatcacaaaatatcacattaaggtaaaaccttctctagctataacaaaggtaacttcatattcaggctcgaaattgacctctcgctttattatattcctatcatttttttctttttatattcttatattcctaatatctcttgcaggatggaacctcacattacatgaaagggattattcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="107298" stop="108506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107598" g_stop="108206" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E236268" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107598" e_stop="108206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATATAGATTTGTGTATCTGAATTCATAAATTCAAAAATATAATATTACGAAACCTTAAAAATTAAACTCATAAATTTTTAATTTTTAATCCGGTCTCTCTTTGCATAGCATCATTTTGCCATGTATATATAAAAATTACACCATATAGAAAGTATATAATATATGTTGCAAAATGAACCAAAATTTTGGAAGAAACAAATTCTTTTTTACTAATAATAGAAACATTGGAGTTGTCAAATATGCTCCAAAACGAAAGGGCAATATTTTGTTTATTTTGTCCATATACATGAATGACATGATAGGTTTTATGGTACAAAACAAAAATTGAGTATGTCATGCTCAAATTATAGTTTCTCATTTTATTTACATTTCTCATCGATATTTTGTATTTGTCTCGTTAAATCTTGATTAACGTCAGAAACTATCACAAAATATCACATTAAGGTAAAACCTTCTCTAGCTATAACAAAGGTAACTTCATATTCAGGCTCGAAATTGACCTCTCGCTTTATTATATTCCTATCATTTTTTTCTTTTTATATTCTTATATTCCTAATATCTCTTGCAGGATGGAACCTCACATTACATGAAAGGGATTATTCTTT</genome_strand>
        <mrna_strand>AATAATATAGATTTGTGTATCTGAATTCATAAATTCAAAAATATAATATTACGAAACCTTAAAAATTAAACTCATAAATTTTTAATTTTTAATCCGGTCTCTCTTTGCATAGCATCATTTTGCCATGTATATATAAAAATTACACCATATAGAAAGTATATAATATATGTTGCAAAATGAACCAAAATTTTGGAAGAAACAAATTCTTTTTTACTAATAATAGAAACATTGGAGTTGTCAAATATGCTCCAAAACGAAAGGGCAATATTTTGTTTATTTTGTCCATATACATGAATGACATGATAGGTTTTATGGTACAAAACAAAAATTGAGTATGTCATGCTCAAATTATAGTTTCTCATTTTATTTACATTTCTCATCGATATTTTGTATTTGTCTCGTTAAATCTTGATTAACGTCAGAAACTATCACAAAATATCACATTAAGGTAAAACCTTCTCTAGCTATAACAAAGGTAACTTCATATTCAGGCTCGAAATTGACCTCTCGCTTTATTATATTCCTATCATTTTTTTCTTTTTATATTCTTATATTCCTAATATCTCTTGCAGGATGGAACCTCACATTACATGAAAGGGATTATTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243517" ref_strand="+" ref_description="SGN-E243517 [cLED-34-H24]">
      <seq>aataatatagatttgtgtatctgaattcataaattcaaaaatataatattacgaaaccttaaaaattaaactcataaatttttaatttttaatccggtctctctttgcatagcatcattttgccatgtatatataaaaattacaccatatagaaagtatataatatatgttgcaaaatgaaccaaaattttggaagaaacaaattcttttttactaataatagaaacattggagttgtcaaatatgctccaaaacgaaagggcaatattttgtttattttgtccatatacatgaatgacatgataggttttatggtacaaaacaaaaattgagtatgtcatgctcaaattatagtttctcattttatttacatttctcatcgatattttgtatttgtctcgttaaatcttgattaacgtcagaaactatcacaaaatatcacattaaggtaaaaccttctctagctataacaaaggtaacttcatattcaggctcgaaattgacctctcgctttattatattcctatcatttttttctttttatattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="107298" stop="108445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107598" g_stop="108145" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E243517" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107598" e_stop="108145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATATAGATTTGTGTATCTGAATTCATAAATTCAAAAATATAATATTACGAAACCTTAAAAATTAAACTCATAAATTTTTAATTTTTAATCCGGTCTCTCTTTGCATAGCATCATTTTGCCATGTATATATAAAAATTACACCATATAGAAAGTATATAATATATGTTGCAAAATGAACCAAAATTTTGGAAGAAACAAATTCTTTTTTACTAATAATAGAAACATTGGAGTTGTCAAATATGCTCCAAAACGAAAGGGCAATATTTTGTTTATTTTGTCCATATACATGAATGACATGATAGGTTTTATGGTACAAAACAAAAATTGAGTATGTCATGCTCAAATTATAGTTTCTCATTTTATTTACATTTCTCATCGATATTTTGTATTTGTCTCGTTAAATCTTGATTAACGTCAGAAACTATCACAAAATATCACATTAAGGTAAAACCTTCTCTAGCTATAACAAAGGTAACTTCATATTCAGGCTCGAAATTGACCTCTCGCTTTATTATATTCCTATCATTTTTTTCTTTTTATATTC</genome_strand>
        <mrna_strand>AATAATATAGATTTGTGTATCTGAATTCATAAATTCAAAAATATAATATTACGAAACCTTAAAAATTAAACTCATAAATTTTTAATTTTTAATCCGGTCTCTCTTTGCATAGCATCATTTTGCCATGTATATATAAAAATTACACCATATAGAAAGTATATAATATATGTTGCAAAATGAACCAAAATTTTGGAAGAAACAAATTCTTTTTTACTAATAATAGAAACATTGGAGTTGTCAAATATGCTCCAAAACGAAAGGGCAATATTTTGTTTATTTTGTCCATATACATGAATGACATGATAGGTTTTATGGTACAAAACAAAAATTGAGTATGTCATGCTCAAATTATAGTTTCTCATTTTATTTACATTTCTCATCGATATTTTGTATTTGTCTCGTTAAATCTTGATTAACGTCAGAAACTATCACAAAATATCACATTAAGGTAAAACCTTCTCTAGCTATAACAAAGGTAACTTCATATTCAGGCTCGAAATTGACCTCTCGCTTTATTATATTCCTATCATTTTTTTCTTTTTATATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228514" ref_strand="+" ref_description="SGN-E228514 [cLED-3-F10]">
      <seq>aataatatagatttgtgtatctgaattcataaattcaaaaatataatattacgaaaccttaaaaattaaactcataaatttttaatttttaatccggtctctctttgcatagcatcattttgccatgtatatataaaaattacaccatatagaaagtatataatatatgttgcaaaatgaaccaaaattttggaagaaacaaattcttttttactaataatagaaacattggagttgtcaaatatgctccaaaacgaaagggcaatattttgtttattttgtccatatacatgaatgacatgataggttttatggtacaaaacaaaaattgagtatgtcatgctcaaattatagtttctcattttatttacatttctcatcgatattttgtatttgtctcgttaaatcttgattaacgtcagaaactatcacaaaatatcacattaaggtaaaaccttctctagctataacaaaggtaacttcatattcaggctcgaaattgacctctcgctttattatattcctatcatttttttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="107298" stop="108436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107598" g_stop="108136" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E228514" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107598" e_stop="108136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATATAGATTTGTGTATCTGAATTCATAAATTCAAAAATATAATATTACGAAACCTTAAAAATTAAACTCATAAATTTTTAATTTTTAATCCGGTCTCTCTTTGCATAGCATCATTTTGCCATGTATATATAAAAATTACACCATATAGAAAGTATATAATATATGTTGCAAAATGAACCAAAATTTTGGAAGAAACAAATTCTTTTTTACTAATAATAGAAACATTGGAGTTGTCAAATATGCTCCAAAACGAAAGGGCAATATTTTGTTTATTTTGTCCATATACATGAATGACATGATAGGTTTTATGGTACAAAACAAAAATTGAGTATGTCATGCTCAAATTATAGTTTCTCATTTTATTTACATTTCTCATCGATATTTTGTATTTGTCTCGTTAAATCTTGATTAACGTCAGAAACTATCACAAAATATCACATTAAGGTAAAACCTTCTCTAGCTATAACAAAGGTAACTTCATATTCAGGCTCGAAATTGACCTCTCGCTTTATTATATTCCTATCATTTTTTTCTT</genome_strand>
        <mrna_strand>AATAATATAGATTTGTGTATCTGAATTCATAAATTCAAAAATATAATATTACGAAACCTTAAAAATTAAACTCATAAATTTTTAATTTTTAATCCGGTCTCTCTTTGCATAGCATCATTTTGCCATGTATATATAAAAATTACACCATATAGAAAGTATATAATATATGTTGCAAAATGAACCAAAATTTTGGAAGAAACAAATTCTTTTTTACTAATAATAGAAACATTGGAGTTGTCAAATATGCTCCAAAACGAAAGGGCAATATTTTGTTTATTTTGTCCATATACATGAATGACATGATAGGTTTTATGGTACAAAACAAAAATTGAGTATGTCATGCTCAAATTATAGTTTCTCATTTTATTTACATTTCTCATCGATATTTTGTATTTGTCTCGTTAAATCTTGATTAACGTCAGAAACTATCACAAAATATCACATTAAGGTAAAACCTTCTCTAGCTATAACAAAGGTAACTTCATATTCAGGCTCGAAATTGACCTCTCGCTTTATTATATTCCTATCATTTTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244654" ref_strand="+" ref_description="SGN-E244654 [cLED-38-G15]">
      <seq>aataatatagatttgtgtatctgaattcataaattcaaaaatataatattacgaaaccttaaaaattaaactcataaatttttaatttttaatccggtctctctttgcatagcatcattttgccatgtatatataaaaattacaccatatagaaagtatataatatatgttgcaaaatgaaccaaaattttggaagaaacaaattcttttttactaataatagaaacattggagttgtcaaatatgctccaaaacgaaagggcaatattttgtttattttgtccatatacatgaatgacatgataggttttatggtacaaaacaaaaattgagtatgtcatgctcaaattatagtttctcattttatttacatttctcatcgatattttgtatttgtctcgttaaatcttgattaacgtcagaaactatcacaaaatatcacattaaggtaaaaccttctctagctataacaaaggtaacttcatattcaggctcgaaattgacctctcgctttattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="107298" stop="108416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107598" g_stop="108116" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E244654" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107598" e_stop="108116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATATAGATTTGTGTATCTGAATTCATAAATTCAAAAATATAATATTACGAAACCTTAAAAATTAAACTCATAAATTTTTAATTTTTAATCCGGTCTCTCTTTGCATAGCATCATTTTGCCATGTATATATAAAAATTACACCATATAGAAAGTATATAATATATGTTGCAAAATGAACCAAAATTTTGGAAGAAACAAATTCTTTTTTACTAATAATAGAAACATTGGAGTTGTCAAATATGCTCCAAAACGAAAGGGCAATATTTTGTTTATTTTGTCCATATACATGAATGACATGATAGGTTTTATGGTACAAAACAAAAATTGAGTATGTCATGCTCAAATTATAGTTTCTCATTTTATTTACATTTCTCATCGATATTTTGTATTTGTCTCGTTAAATCTTGATTAACGTCAGAAACTATCACAAAATATCACATTAAGGTAAAACCTTCTCTAGCTATAACAAAGGTAACTTCATATTCAGGCTCGAAATTGACCTCTCGCTTTATTAT</genome_strand>
        <mrna_strand>AATAATATAGATTTGTGTATCTGAATTCATAAATTCAAAAATATAATATTACGAAACCTTAAAAATTAAACTCATAAATTTTTAATTTTTAATCCGGTCTCTCTTTGCATAGCATCATTTTGCCATGTATATATAAAAATTACACCATATAGAAAGTATATAATATATGTTGCAAAATGAACCAAAATTTTGGAAGAAACAAATTCTTTTTTACTAATAATAGAAACATTGGAGTTGTCAAATATGCTCCAAAACGAAAGGGCAATATTTTGTTTATTTTGTCCATATACATGAATGACATGATAGGTTTTATGGTACAAAACAAAAATTGAGTATGTCATGCTCAAATTATAGTTTCTCATTTTATTTACATTTCTCATCGATATTTTGTATTTGTCTCGTTAAATCTTGATTAACGTCAGAAACTATCACAAAATATCACATTAAGGTAAAACCTTCTCTAGCTATAACAAAGGTAACTTCATATTCAGGCTCGAAATTGACCTCTCGCTTTATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240947" ref_strand="+" ref_description="SGN-E240947 [cLED-24-K12]">
      <seq>aataatatagatttgtgtatctgaattcataaattcaaaaatataatattacgaaaccttaaaaattaaactcataaatttttaatttttaatccggtctctctttgcatagcatcattttgccatgtatatataaaaattacaccatatagaaagtatataatatatgttgcaaaatgaaccaaaattttggaagaaacaaattcttttttactaataatagaaacattggagttgtcaaatatgctccaaaacgaaagggcaatattttgtttattttgtccatatacatgaatgacatgataggttttatggtacaaaacaaaaattgagtatgtcatgctcaaattatagtttctcattttatttacatttctcatcgatattttgtatttgtctcgttaaatcttgattaacgtcagaaactatcacaaaatatcacatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="107298" stop="108343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107598" g_stop="108043" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E240947" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107598" e_stop="108043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATATAGATTTGTGTATCTGAATTCATAAATTCAAAAATATAATATTACGAAACCTTAAAAATTAAACTCATAAATTTTTAATTTTTAATCCGGTCTCTCTTTGCATAGCATCATTTTGCCATGTATATATAAAAATTACACCATATAGAAAGTATATAATATATGTTGCAAAATGAACCAAAATTTTGGAAGAAACAAATTCTTTTTTACTAATAATAGAAACATTGGAGTTGTCAAATATGCTCCAAAACGAAAGGGCAATATTTTGTTTATTTTGTCCATATACATGAATGACATGATAGGTTTTATGGTACAAAACAAAAATTGAGTATGTCATGCTCAAATTATAGTTTCTCATTTTATTTACATTTCTCATCGATATTTTGTATTTGTCTCGTTAAATCTTGATTAACGTCAGAAACTATCACAAAATATCACATTA</genome_strand>
        <mrna_strand>AATAATATAGATTTGTGTATCTGAATTCATAAATTCAAAAATATAATATTACGAAACCTTAAAAATTAAACTCATAAATTTTTAATTTTTAATCCGGTCTCTCTTTGCATAGCATCATTTTGCCATGTATATATAAAAATTACACCATATAGAAAGTATATAATATATGTTGCAAAATGAACCAAAATTTTGGAAGAAACAAATTCTTTTTTACTAATAATAGAAACATTGGAGTTGTCAAATATGCTCCAAAACGAAAGGGCAATATTTTGTTTATTTTGTCCATATACATGAATGACATGATAGGTTTTATGGTACAAAACAAAAATTGAGTATGTCATGCTCAAATTATAGTTTCTCATTTTATTTACATTTCTCATCGATATTTTGTATTTGTCTCGTTAAATCTTGATTAACGTCAGAAACTATCACAAAATATCACATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240008" ref_strand="+" ref_description="SGN-E240008 [cLED-29-J14]">
      <seq>aataatatagatttgtgtatctgaattcataaattcaaaaatataatattacgaaaccttaaaaattaaactcataaatttttaatttttaatccggtctctctttgcatagcatcattttgccatgtatatataaaaattacaccatatagaaagtatataatatatgttgcaaaatgaaccaaaattttggaagaaacaaattcttttttactaataatagaaacattggagttgtcaaatatgctccaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="107298" stop="108152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107598" g_stop="107852" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-E240008" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107598" e_stop="107852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATATAGATTTGTGTATCTGAATTCATAAATTCAAAAATATAATATTACGAAACCTTAAAAATTAAACTCATAAATTTTTAATTTTTAATCCGGTCTCTCTTTGCATAGCATCATTTTGCCATGTATATATAAAAATTACACCATATAGAAAGTATATAATATATGTTGCAAAATGAACCAAAATTTTGGAAGAAACAAATTCTTTTTTACTAATAATAGAAACATTGGAGTTGTCAAATATGCTCCAAAAC</genome_strand>
        <mrna_strand>AATAATATAGATTTGTGTATCTGAATTCATAAATTCAAAAATATAATATTACGAAACCTTAAAAATTAAACTCATAAATTTTTAATTTTTAATCCGGTCTCTCTTTGCATAGCATCATTTTGCCATGTATATATAAAAATTACACCATATAGAAAGTATATAATATATGTTGCAAAATGAACCAAAATTTTGGAAGAAACAAATTCTTTTTTACTAATAATAGAAACATTGGAGTTGTCAAATATGCTCCAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339334" ref_strand="-" ref_description="SGN-E339334 [cTOF-4-L4]">
      <seq>agaagaagaagaaaatggaagtgaatggaaatattagacccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacgacaggaacaggatttatcaaagtggagaataatgagaacacttttaatataggagctgattatactactgatccaagccatgtttacaaggggaatccagctactaatgattggattccttctgctgttgatgaggttaattttatctcaggaaaaccacacagaagtgataactgaaattgagtctttgataaagacagtatctgcttattttgtatttctgtgaagcttggcttcaacttgtgtctcttttgtttggttgtatttgaataacatgctatatgaattatttcaaacgattttaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="-" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113992" stop="72651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113692" g_stop="113439" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113438" i_stop="112253" i_length="1186">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112252" g_stop="112160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="348" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112159" i_stop="111432" i_length="728">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111431" g_stop="111297" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="483" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111296" i_stop="110967" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110966" g_stop="110778" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="672" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="-" ref_id="SGN-E339334" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339334" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113692" e_stop="113439"/>
          <exon e_start="112252" e_stop="112160"/>
          <exon e_start="111431" e_stop="111297"/>
          <exon e_start="110966" e_stop="110778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGA-CCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATATTTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAGGTATGACCAAATGAAACTTTTTGTATATGTGACTAAATGTTTGCGATAACTTGTTGAGAGGCGCGTGAGATGAAAAAGTCTTAGAAGTGATCTCACATGACACAATGAGTTCATGGTGAACACCTGATAGTTTAGGTTTGAAACTCGAAAGACAAAAATAGTTTTAGGGAGGGGGTTGGGGGTTATTTTATTCACTCAAATTGATTTCCACATGTATTGCCACTTGGAATTCTTGTGTAATATGTCAACCCAAACTGTTTTATTTTATTTCTTTGGTTATTGTAATTCTCAAAATTAATGTCTAATTGTCTGTCATTTTTGGTGGATCAGGTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>AGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAG..........................................................................................................................................................................................................................................................................................................................................GTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTTGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAAAAAAAAAAAAAAAAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615333" ref_strand="+" ref_description="SGN-E615333 [65130]">
      <seq>cttttaaggaagaaatatctagccccaaagatatctaactacattataacatttgtagcacatgatattacattgatgaaccccttcaactaacacaaataaataatattaccctttttttacttcaagatctttaacaagaagaagaagaagaagaaaatggaagtgaatggaaatattagaccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggcaacaagagagtattttgatgacattgcaccaaaaagacacactaaacctcaacgaagtgattattcttcaacttatgttgatcacatcaatctctatccttcttctcatgacacaattcccgaaaatcttgaattccaacgtctcgaaaatgatcctcagaaattggtttacaaaggcagccaagtgacagaggaatttattgaaacagagtattacaatgatcttaattgcatcgacaagcagcaccacacgacaggaacagggtttatcaaagtggagaataatgggaacactttcaatataggagatgattctgctattgatccaagccatgtttacaaggggaatccagctactaatgattggattccttctgctgttgatgaggttaattttatctcaggaaaaccaaacagaagtgataactgaaattgagtctttgataagggcagtagctgcttattttctatttctgtgaagcttggcttcaacttgtctctctttggtaaggtttcatttgaataacatggtatatgaattattcagacgatttttccctatctccctttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="-" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114138" stop="110571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113838" g_stop="113439" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113438" i_stop="112253" i_length="1186">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112252" g_stop="112160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="492" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112159" i_stop="111432" i_length="728">
            <donor d_prob="0.978" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111431" g_stop="111297" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="627" r_length="135" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111296" i_stop="110967" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110966" g_stop="110782" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="812" r_length="185" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="-" ref_id="SGN-E615333" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113838" e_stop="113439"/>
          <exon e_start="112252" e_stop="112160"/>
          <exon e_start="111431" e_stop="111297"/>
          <exon e_start="110966" e_stop="110782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGAAGGAAAAAATATCTACCCCAAAAGATATCTAACTACTTTACAACATTTGTAGCACATGATATTATTACATTGATGAACCCCTTCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTAC---AAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATATTTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAGGTATGACCAAATGAAACTTTTTGTATATGTGACTAAATGTTTGCGATAACTTGTTGAGAGGCGCGTGAGATGAAAAAGTCTTAGAAGTGATCTCACATGACACAATGAGTTCATGGTGAACACCTGATAGTTTAGGTTTGAAACTCGAAAGACAAAAATAGTTTTAGGGAGGGGGTTGGGGGTTATTTTATTCACTCAAATTGATTTCCACATGTATTGCCACTTGGAATTCTTGTGTAATATGTCAACCCAAACTGTTTTATTTTATTTCTTTGGTTATTGTAATTCTCAAAATTAATGTCTAATTGTCTGTCATTTTTGGTGGATCAGGTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>CTTTTAAGGAAGAAATATCTAGCCCCAAAGATATCTAACTACATTATAACATTTGTAGCACATG--A-TATTACATTGATGAACCCCTTCAACTAACA-CAAATAAATAATATTACCCTTTTTTTACTTCAAGATCTTTAACAAGAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGCAACAAGAGAGTATTTTGATGACATTGCACCAAAAAGACACACTAAACCTCAACGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTATCCTTCTTCTCATGACACAATTCCCGAAAATCTTGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAAAGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAGTATTACAATGATCTTAATTGCATCGACAAGCAGCACCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGGTTTATCAAAGTGGAGAATAATGGGAACACTTTCAATATAGGAGATGATTCTGCTATTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAG..........................................................................................................................................................................................................................................................................................................................................GTTAATTTTATCTCAGGAAAACCAAACAGAAGTGATAACTGAAATTGAGTCTTTGATAAGGGCAGTAGCTGCTTATTTTCTATTTCTGTGAAGCTTGGCTTCAACTTGTCTCTCTTTGGTAAGGTTTCATTTGAATAACATGGTATATGAATTATTCAGACGATTTTTCCCTATCTCCCTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273189" ref_strand="+" ref_description="SGN-E273189 [cLEM-24-L8]">
      <seq>tggaaatattagaccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacgacaggaacaggatttatcaaagtggagaataatgagaacacttttaatataggagctgattatactactgatccaagccatgtttacaaggggaatccagctactaatgattggattccttctgctgttgatgaggttaattttatctcaggaaaaccacacagaagtgataactgaaattgagtctttgataaagacagtatctgcttattttgtatttctgtgaagcttggcttcaacttgtgtctcttttgtttggttgtatttgaataacatgctatatgaattatttcaaacgattttaatgaagaatttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="-" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113967" stop="110571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113667" g_stop="113439" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113438" i_stop="112253" i_length="1186">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112252" g_stop="112160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="322" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112159" i_stop="111432" i_length="728">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111431" g_stop="111297" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="457" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111296" i_stop="110967" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110966" g_stop="110784" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="640" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="-" ref_id="SGN-E273189" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113667" e_stop="113439"/>
          <exon e_start="112252" e_stop="112160"/>
          <exon e_start="111431" e_stop="111297"/>
          <exon e_start="110966" e_stop="110784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATATTTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAGGTATGACCAAATGAAACTTTTTGTATATGTGACTAAATGTTTGCGATAACTTGTTGAGAGGCGCGTGAGATGAAAAAGTCTTAGAAGTGATCTCACATGACACAATGAGTTCATGGTGAACACCTGATAGTTTAGGTTTGAAACTCGAAAGACAAAAATAGTTTTAGGGAGGGGGTTGGGGGTTATTTTATTCACTCAAATTGATTTCCACATGTATTGCCACTTGGAATTCTTGTGTAATATGTCAACCCAAACTGTTTTATTTTATTTCTTTGGTTATTGTAATTCTCAAAATTAATGTCTAATTGTCTGTCATTTTTGGTGGATCAGGTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>TGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAG..........................................................................................................................................................................................................................................................................................................................................GTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTTGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAATGAAGAATTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340816" ref_strand="+" ref_description="SGN-E340816 [cTOF-5-D23]">
      <seq>ttcaactaacatcaaacaaataatattaccctctttttttttcaagattttttacaagaagaagaagaagaaaatggaagtgaatggaaatattagaccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacgacaggaacaggatttatcaaagtggagaataatgagaacacttttaatataggagctgattatactactgatccaagccatgtttacaaggggaatccagctactaatgattggattccttctgctgttgatgaggttaattttatctcaggaaaaccacacagaagtgataactgaaattgagtctttgataaagacagtatctgcttattttgtatttctgtgaagcttggcttcaacttgtgtctcttttgtttgggttgtatttgaataacatgctatatgaattatttcaaacgattttaatgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="-" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114051" stop="110571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113751" g_stop="113439" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113438" i_stop="112253" i_length="1186">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112252" g_stop="112160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="406" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112159" i_stop="111432" i_length="728">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111431" g_stop="111297" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="541" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111296" i_stop="110967" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110966" g_stop="110786" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="722" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="-" ref_id="SGN-E340816" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113751" e_stop="113439"/>
          <exon e_start="112252" e_stop="112160"/>
          <exon e_start="111431" e_stop="111297"/>
          <exon e_start="110966" e_stop="110786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATATTTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAGGTATGACCAAATGAAACTTTTTGTATATGTGACTAAATGTTTGCGATAACTTGTTGAGAGGCGCGTGAGATGAAAAAGTCTTAGAAGTGATCTCACATGACACAATGAGTTCATGGTGAACACCTGATAGTTTAGGTTTGAAACTCGAAAGACAAAAATAGTTTTAGGGAGGGGGTTGGGGGTTATTTTATTCACTCAAATTGATTTCCACATGTATTGCCACTTGGAATTCTTGTGTAATATGTCAACCCAAACTGTTTTATTTTATTTCTTTGGTTATTGTAATTCTCAAAATTAATGTCTAATTGTCTGTCATTTTTGGTGGATCAGGTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>TTCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAG..........................................................................................................................................................................................................................................................................................................................................GTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTTGGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAATGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298932" ref_strand="+" ref_description="SGN-E298932 [cLET-42-O13]">
      <seq>aagaagaaaatggaagtgaatggaaatattagaccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacgacaggaacaggatttatcaaagtggagaataatgagaacacttttaatataggagctgattatactactgatccaagccatgtttacaaggggaatccagctactaatgattggattccttctgctgttgatgaggttaattttatctcaggaaaaccacacagaagtgataactgaaattgagtctttgataaagacagtatctgcttattttgtatttctgtgaagcttggcttcaacttgtgtctcttttgattggttgtatttgaataacatgctatatgaattatttcaaacgattttaatgaagaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="-" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113987" stop="110571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113687" g_stop="113439" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113438" i_stop="112253" i_length="1186">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112252" g_stop="112160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="342" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112159" i_stop="111432" i_length="728">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111431" g_stop="111297" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="477" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111296" i_stop="110967" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110966" g_stop="110786" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="658" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="-" ref_id="SGN-E298932" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113687" e_stop="113439"/>
          <exon e_start="112252" e_stop="112160"/>
          <exon e_start="111431" e_stop="111297"/>
          <exon e_start="110966" e_stop="110786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATATTTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAGGTATGACCAAATGAAACTTTTTGTATATGTGACTAAATGTTTGCGATAACTTGTTGAGAGGCGCGTGAGATGAAAAAGTCTTAGAAGTGATCTCACATGACACAATGAGTTCATGGTGAACACCTGATAGTTTAGGTTTGAAACTCGAAAGACAAAAATAGTTTTAGGGAGGGGGTTGGGGGTTATTTTATTCACTCAAATTGATTTCCACATGTATTGCCACTTGGAATTCTTGTGTAATATGTCAACCCAAACTGTTTTATTTTATTTCTTTGGTTATTGTAATTCTCAAAATTAATGTCTAATTGTCTGTCATTTTTGGTGGATCAGGTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>AAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAG..........................................................................................................................................................................................................................................................................................................................................GTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGATTGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAATGAAGAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341789" ref_strand="+" ref_description="SGN-E341789 [cTOF-9-C18]">
      <seq>aaataatattaccctctttttttttcaagattttttacaagaagaagaagaagaaaatggaagtgaatggaaatattagaccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacgacaggaacaggatttatcaaagtggagaataatgagaacacttttaatataggagctgattatactactgatccaagccatgtttacaaggggaatccagctactaatgattggattccttctgctgttgatgaggttaattttatctcaggaaaaccacacagaagtgataactgaaattgagtctttgataaagacagtatctgcttattttgtatttctgggaagcttggcttcaaacttgtgtctcttttgtttgggtggtattttgaataacatgctatatngaattatttcaaacgattttaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="-" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114034" stop="110571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113734" g_stop="113439" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113438" i_stop="112253" i_length="1186">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112252" g_stop="112160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="389" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112159" i_stop="111432" i_length="728">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111431" g_stop="111297" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="524" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111296" i_stop="110967" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110966" g_stop="110791" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="700" r_length="176" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="-" ref_id="SGN-E341789" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113734" e_stop="113439"/>
          <exon e_start="112252" e_stop="112160"/>
          <exon e_start="111431" e_stop="111297"/>
          <exon e_start="110966" e_stop="110791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATATTTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAGGTATGACCAAATGAAACTTTTTGTATATGTGACTAAATGTTTGCGATAACTTGTTGAGAGGCGCGTGAGATGAAAAAGTCTTAGAAGTGATCTCACATGACACAATGAGTTCATGGTGAACACCTGATAGTTTAGGTTTGAAACTCGAAAGACAAAAATAGTTTTAGGGAGGGGGTTGGGGGTTATTTTATTCACTCAAATTGATTTCCACATGTATTGCCACTTGGAATTCTTGTGTAATATGTCAACCCAAACTGTTTTATTTTATTTCTTTGGTTATTGTAATTCTCAAAATTAATGTCTAATTGTCTGTCATTTTTGGTGGATCAGGTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>AAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAG..........................................................................................................................................................................................................................................................................................................................................GTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGGGAAGCTTGGCTTCAAACTTGTGTCTCTTTTGTTTGGGTGGTATTTTGAATAACATGCTATATNGAATTATTTCAAACGATTTTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719007" ref_strand="+" ref_description="SGN-E719007 [FC06BH12]">
      <seq>gacctaccaccaactcccaataatctcaaaatatctttgaaggaaaaaatatctaccccacaagatatctaactactttacaacatttgtagcacatgatattattacattgatgaaccccttcaactaacatcaaacaaataatattaccctctttttttttcaagattttttacaagaagaagaagaagaaaatggaagtgaatggaaatattagaccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcaaaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacgacaggaacaggatttatcaaagtggagaataatgagaacacttttaatataggagctgattatactactgatccaagccatgtttacaaggggaatccagctactaatgattggattccttctgctgttgatgaggttaattttatctcaggaaaaccacacagaagtgataactgaaattgagtctttgataaagacagtatctgcttattttgtatttctgtgaagcttggcttcaacttgtgtctcttttgtttggttgtatttgaataacatgctatatgaattatttcaaacgattttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="-" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114171" stop="110571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113872" g_stop="113439" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113438" i_stop="112253" i_length="1186">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112252" g_stop="112160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="527" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112159" i_stop="111432" i_length="728">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111431" g_stop="111297" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="662" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111296" i_stop="110967" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110966" g_stop="110796" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="833" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="-" ref_id="SGN-E719007" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113872" e_stop="113439"/>
          <exon e_start="112252" e_stop="112160"/>
          <exon e_start="111431" e_stop="111297"/>
          <exon e_start="110966" e_stop="110796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTACCACCAACTTCCAAAACTCTCAAAATATCTTTGAAGGAAAAAATATCTACCCCAAAAGATATCTAACTACTTTACAACATTTGTAGCACATGATATTATTACATTGATGAACCCCTTCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATATTTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAGGTATGACCAAATGAAACTTTTTGTATATGTGACTAAATGTTTGCGATAACTTGTTGAGAGGCGCGTGAGATGAAAAAGTCTTAGAAGTGATCTCACATGACACAATGAGTTCATGGTGAACACCTGATAGTTTAGGTTTGAAACTCGAAAGACAAAAATAGTTTTAGGGAGGGGGTTGGGGGTTATTTTATTCACTCAAATTGATTTCCACATGTATTGCCACTTGGAATTCTTGTGTAATATGTCAACCCAAACTGTTTTATTTTATTTCTTTGGTTATTGTAATTCTCAAAATTAATGTCTAATTGTCTGTCATTTTTGGTGGATCAGGTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>GACCTACCACCAACTCCCAATAATCTCAAAATATCTTTGAAGGAAAAAATATCTACCCCACAAGATATCTAACTACTTTACAACATTTGTAGCACATGATATTATTACATTGATGAACCCCTTCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAG..........................................................................................................................................................................................................................................................................................................................................GTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTTGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615620" ref_strand="+" ref_description="SGN-E615620 [65420]">
      <seq>ttgtagcacatgatattacattgatgaaccccttcaactaacacaaataaataatattaccctttttttacttcaagatctttaacaagaagaagaagaagaaaatggaagtgaatggaaatattagaccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggcaacaagagagtattttgatgacattgcaccaaaaagacacactaaacctcaacgaagtgattattcttcaacttatgttgatcacatcaatctctatccttcttctcatgacacaattcccgaaaatcttgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagagtattacaaagatcttaattgcattgacaagcagcaccacacgacaggaacaggatttatcaaagtggagaataatgggaacactttcaatataggagatgattctgctactgatccaagccatgtttacaaggggaatccagctactaatgattggattccttctgctgttgatgaggttaattttatctcaggaaaaccaaacagaagtgatagctgaaattgagtctttgataagggcagtagctgcttatttggtatttctgtgaagcttggcttcaacttgtctctcttntgttggttgtatttgaataacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="-" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114074" stop="110571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113786" g_stop="113439" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113438" i_stop="112253" i_length="1186">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112252" g_stop="112160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="437" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112159" i_stop="111432" i_length="728">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111431" g_stop="111297" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="572" r_length="135" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111296" i_stop="110967" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110966" g_stop="110827" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="712" r_length="140" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="-" ref_id="SGN-E615620" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113786" e_stop="113439"/>
          <exon e_start="112252" e_stop="112160"/>
          <exon e_start="111431" e_stop="111297"/>
          <exon e_start="110966" e_stop="110827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTAGCACATGATATTATTACATTGATGAACCCCTTCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATATTTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAGGTATGACCAAATGAAACTTTTTGTATATGTGACTAAATGTTTGCGATAACTTGTTGAGAGGCGCGTGAGATGAAAAAGTCTTAGAAGTGATCTCACATGACACAATGAGTTCATGGTGAACACCTGATAGTTTAGGTTTGAAACTCGAAAGACAAAAATAGTTTTAGGGAGGGGGTTGGGGGTTATTTTATTCACTCAAATTGATTTCCACATGTATTGCCACTTGGAATTCTTGTGTAATATGTCAACCCAAACTGTTTTATTTTATTTCTTTGGTTATTGTAATTCTCAAAATTAATGTCTAATTGTCTGTCATTTTTGGTGGATCAGGTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>TTGTAGCACATG--A-TATTACATTGATGAACCCCTTCAACTAACA-CAAATAAATAATATTACCCTTTTTTTACTTCAAGATCTTTAACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGCAACAAGAGAGTATTTTGATGACATTGCACCAAAAAGACACACTAAACCTCAACGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTATCCTTCTTCTCATGACACAATTCCCGAAAATCTTGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAGTATTACAAAGATCTTAATTGCATTGACAAGCAGCACCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGGAGAATAATGGGAACACTTTCAATATAGGAGATGATTCTGCTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAG..........................................................................................................................................................................................................................................................................................................................................GTTAATTTTATCTCAGGAAAACCAAACAGAAGTGATAGCTGAAATTGAGTCTTTGATAAGGGCAGTAGCTGCTTATTTGGTATTTCTGTGAAGCTTGGCTTCAACTTGTCTCTCTTNTGTTGGTTGTATTTGAATAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576045" ref_strand="+" ref_description="SGN-E576045 [59200]">
      <seq>agaaaatggaagtgaatggaaatattagaccaaatagaagtgatgtcatttatcaaaagaggaagaaacaaagatagaagaggcaacaagagagtatttgatgacattgcaccaaaaagacacactaaacctcaacgaagtgattattcttcaacttatgttgatcacatcaatctctatccttcttctcatgacacaattcccgaaaatcttgaattccaacgtctcgaaaatgatcctcagaaattggttgacaatggcagccaagtgacagaggaatttattgaaacagagtattacaaagatcttaattgcattgacaagcagcaccacacgacaggaacaggatttatcaaagtgaagaataatgggaacactttcaatataggagatgattctgctactgatccaagccatgtttacaaggcgaatccagtactaatgattggattccttctgctgttgatgaggtaattttatctcaggaaaagcaaacagaagtgatagctgaaattgagtctttgataagggcagtagctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="-" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113983" stop="110594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113683" g_stop="113439" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113438" i_stop="112253" i_length="1186">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112252" g_stop="112160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="336" r_length="93" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112159" i_stop="111432" i_length="728">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111431" g_stop="111297" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="470" r_length="134" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111296" i_stop="110967" i_length="330">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110966" g_stop="110894" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="542" r_length="72" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="-" ref_id="SGN-E576045" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113683" e_stop="113439"/>
          <exon e_start="112252" e_stop="112160"/>
          <exon e_start="111431" e_stop="111297"/>
          <exon e_start="110966" e_stop="110894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATATTTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAGGTATGACCAAATGAAACTTTTTGTATATGTGACTAAATGTTTGCGATAACTTGTTGAGAGGCGCGTGAGATGAAAAAGTCTTAGAAGTGATCTCACATGACACAATGAGTTCATGGTGAACACCTGATAGTTTAGGTTTGAAACTCGAAAGACAAAAATAGTTTTAGGGAGGGGGTTGGGGGTTATTTTATTCACTCAAATTGATTTCCACATGTATTGCCACTTGGAATTCTTGTGTAATATGTCAACCCAAACTGTTTTATTTTATTTCTTTGGTTATTGTAATTCTCAAAATTAATGTCTAATTGTCTGTCATTTTTGGTGGATCAGGTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCT</genome_strand>
        <mrna_strand>AGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATG-TCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGCAACAAGAGAGTA-TTTGATGACATTGCACCAAAAAGACACACTAAACCTCAACGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTATCCTTCTTCTCATGACACAATTCCCGAAAATCTTGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTGACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAGTATTACAAAGATCTTAATTGCATTGACAAGCAGCACCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGAAGAATAATGGGAACACTTTCAATATAGGAGATGATTCTGCTACTGATCCAAGCCATGTTTACAAGGCGAATCCAG-TACTAATGATTGGATTCCTTCTGCTGTTGATGAG..........................................................................................................................................................................................................................................................................................................................................G-TAATTTTATCTCAGGAAAAGCAAACAGAAGTGATAGCTGAAATTGAGTCTTTGATAAGGGCAGTAGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300644" ref_strand="+" ref_description="SGN-E300644 [cLET-45-N7]">
      <seq>caaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacgacaggaacaggatttatcaaagtggagaataatgagaacacttttaatataggagctgattatactactgatccaagccatgtttacaaggggaatccagctactaatgattggattccttctgctgttgatgaggttaattttatctcaggaaaaccacacagaagtgataactgaaattgagtctttgataaagacagtatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="-" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113914" stop="110595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113614" g_stop="113439" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113438" i_stop="112253" i_length="1186">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112252" g_stop="112160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="269" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112159" i_stop="111432" i_length="728">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111431" g_stop="111297" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="404" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111296" i_stop="110967" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110966" g_stop="110895" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="476" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="-" ref_id="SGN-E300644" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113614" e_stop="113439"/>
          <exon e_start="112252" e_stop="112160"/>
          <exon e_start="111431" e_stop="111297"/>
          <exon e_start="110966" e_stop="110895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATATTTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAGGTATGACCAAATGAAACTTTTTGTATATGTGACTAAATGTTTGCGATAACTTGTTGAGAGGCGCGTGAGATGAAAAAGTCTTAGAAGTGATCTCACATGACACAATGAGTTCATGGTGAACACCTGATAGTTTAGGTTTGAAACTCGAAAGACAAAAATAGTTTTAGGGAGGGGGTTGGGGGTTATTTTATTCACTCAAATTGATTTCCACATGTATTGCCACTTGGAATTCTTGTGTAATATGTCAACCCAAACTGTTTTATTTTATTTCTTTGGTTATTGTAATTCTCAAAATTAATGTCTAATTGTCTGTCATTTTTGGTGGATCAGGTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGC</genome_strand>
        <mrna_strand>CAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAG..........................................................................................................................................................................................................................................................................................................................................GTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294546" ref_strand="+" ref_description="SGN-E294546 [cLET-22-I24]">
      <seq>tcaactaacatcaaacaaataatattaccctctttttttttcaagattttttacaagaagaagaagaagaaaatggaagtgaatggaaatattagaccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacgacaggaacaggatttatcaaagtggagaataatgagaacacttttaatataggagctgattatactactgatccaagccatgtttacaaggggaatccagctactaatgattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="-" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114050" stop="111017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113750" g_stop="113439" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113438" i_stop="112253" i_length="1186">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112252" g_stop="112160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="405" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112159" i_stop="111432" i_length="728">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111431" g_stop="111317" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="520" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="-" ref_id="SGN-E294546" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113750" e_stop="113439"/>
          <exon e_start="112252" e_stop="112160"/>
          <exon e_start="111431" e_stop="111317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATATTTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGA</genome_strand>
        <mrna_strand>TCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296694" ref_strand="+" ref_description="SGN-E296694 [cLET-39-H4]">
      <seq>tcaactaacatcaaacaaataatattaccctctttttttttcaagattttttacaagaagaagaagaagaaaatggaagtgaatggaaatattagaccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacgacaggaacaggatttatcaaagtggagaataatgagaacacttttaatataggagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="-" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114050" stop="111075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113750" g_stop="113439" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113438" i_stop="112253" i_length="1186">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112252" g_stop="112160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="405" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112159" i_stop="111432" i_length="728">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111431" g_stop="111375" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="462" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="-" ref_id="SGN-E296694" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113750" e_stop="113439"/>
          <exon e_start="112252" e_stop="112160"/>
          <exon e_start="111431" e_stop="111375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATATTTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCT</genome_strand>
        <mrna_strand>TCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341086" ref_strand="+" ref_description="SGN-E341086 [cTOE-22-E16]">
      <seq>tttttttttcaagattttttacaagaagaagaagaagaaaatggaagtgaatggaaatattagaccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacggttactactctcactcactcttataacactcttattacctaaaaaatccaattacagtcgaacctctctatgacgacatcggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="-" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114018" stop="111777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113718" g_stop="113439" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113438" i_stop="112253" i_length="1186">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112252" g_stop="112076" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="457" r_length="177" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="-" ref_id="SGN-E341086" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113718" e_stop="113439"/>
          <exon e_start="112252" e_stop="112076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTT</genome_strand>
        <mrna_strand>TTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286685" ref_strand="+" ref_description="SGN-E286685 [cLES-14-K11]">
      <seq>gaaaaaatatctaccccaaaagatatctaactactttacaacatttgtagcacatgatattattacattgatgaaccccttcaactaacatcaaacaaataatattaccctctttttttttcaagattttttacaagaagaagaagaagaaaatggaagtgaatggaaatattagaccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="-" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114130" stop="111867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113830" g_stop="113439" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113438" i_stop="112253" i_length="1186">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112252" g_stop="112167" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="478" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="-" ref_id="SGN-E286685" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113830" e_stop="113439"/>
          <exon e_start="112252" e_stop="112167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAATATCTACCCCAAAAGATATCTAACTACTTTACAACATTTGTAGCACATGATATTATTACATTGATGAACCCCTTCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCA</genome_strand>
        <mrna_strand>GAAAAAATATCTACCCCAAAAGATATCTAACTACTTTACAACATTTGTAGCACATGATATTATTACATTGATGAACCCCTTCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>72</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1187" PGL_stop="834"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1187" e_stop="834"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="1187" e_stop="834" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1187" stop="834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204533" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTTTCATTATCAAAATGGTATGAAAGGACATTGGACTTGTGAATGTTGTCGACCCAATAATTTGACAAGTTTATAAATCCTCTATCATGATACAAGAAGATAAAGTGATGGTACACTTAATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGTCATGACAATGTGCTTATAATGCAAATTTATGAAAAACAAATAAATAATTAGTCCATTCCTTGAAGAGAATGTGACTTGTGATGAGTATGGTGGATGCTCGACCATTCTATATGAGAATGGGTCCAGATATGATAAAATCATTATGGGTTGGATATATGTTACAACTCACCTCTATGGAAG</gDNA_template>
            <first_frame> I  F  H  Y  Q  N  G  M  K  G  H  W  T  C  E  C  C  R  P  N  N  L  T  S  L  *  I  L  Y  H  D  T  R  R  *  S  D  G  T  L  N  L  S  K  *  C  *  G  V  S  W  K  Y  D  E  F  *  S  H  D  N  V  L  I  M  Q  I  Y  E  K  Q  I  N  N  *  S  I  P  *  R  E  C  D  L  *  *  V  W  W  M  L  D  H  S  I  *  E  W  V  Q  I  *  *  N  H  Y  G  L  D  I  C  Y  N  S  P  L  W  K </first_frame>
            <second_frame>  F  F  I  I  K  M  V  *  K  D  I  G  L  V  N  V  V  D  P  I  I  *  Q  V  Y  K  S  S  I  M  I  Q  E  D  K  V  M  V  H  L  I  F  Q  S  D  V  E  V  C  H  G  N  M  M  N  F  K  V  M  T  M  C  L  *  C  K  F  M  K  N  K  *  I  I  S  P  F  L  E  E  N  V  T  C  D  E  Y  G  G  C  S  T  I  L  Y  E  N  G  S  R  Y  D  K  I  I  M  G  W  I  Y  V  T  T  H  L  Y  G   </second_frame>
            <third_frame>   F  S  L  S  K  W  Y  E  R  T  L  D  L  *  M  L  S  T  Q  *  F  D  K  F  I  N  P  L  S  *  Y  K  K  I  K  *  W  Y  T  *  S  F  K  V  M  L  R  C  V  M  E  I  *  *  I  L  K  S  *  Q  C  A  Y  N  A  N  L  *  K  T  N  K  *  L  V  H  S  L  K  R  M  *  L  V  M  S  M  V  D  A  R  P  F  Y  M  R  M  G  P  D  M  I  K  S  L  W  V  G  Y  M  L  Q  L  T  S  M  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0144J05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="3910" PGL_stop="4397"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3910" e_stop="4397"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="3910" e_stop="4397" e_length="488"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3910" stop="4397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203362" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTGGAGATGGTGCAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAGTGTGACCCTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTGAACACTTTTCTCTAGTTTTTGCAACTTGATAAACACTTTTCAAGAACTCTTGCAAAGGCTAATACAAAGCAAAGGCAGAATCATTCCTAGGACAACAGCAATATCTGGAGCTTTTCGTCTAATTGTTTAGGAATTTATTCTCTTGTTCTTAAATTGTAAACCACTCCTAAATCTATAAAGGAATTGGTGTGTTGTGTTCAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTTCTACTTTGGCTTGTTGAGCAATAGAGGTCTATTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTTGCTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAA</gDNA_template>
            <first_frame> A  G  D  G  A  E  S  R  C  T  L  P  D  G  V  R  K  C  D  P  S  N  Q  W  Q  R  S  L  G  K  *  L  A  H  I  K  G  T  F  L  N  T  F  L  *  F  L  Q  L  D  K  H  F  S  R  T  L  A  K  A  N  T  K  Q  R  Q  N  H  S  *  D  N  S  N  I  W  S  F  S  S  N  C  L  G  I  Y  S  L  V  L  K  L  *  T  T  P  K  S  I  K  E  L  V  C  C  V  Q  S  L  G  C  P  G  G  I  A  *  W  V  D  C  F  S  T  L  A  C  *  A  I  E  V  Y  C  L  T  V  R  L  I  T  L  S  Y  V  W  C  N  R  V  L  L  L  L  L  K  I  S  E  N  D  *   </first_frame>
            <second_frame>  L  E  M  V  Q  K  V  G  A  H  F  P  M  A  S  E  S  V  T  L  P  T  N  G  K  E  V  *  E  S  D  L  P  I  *  K  A  L  S  *  T  L  F  S  S  F  C  N  L  I  N  T  F  Q  E  L  L  Q  R  L  I  Q  S  K  G  R  I  I  P  R  T  T  A  I  S  G  A  F  R  L  I  V  *  E  F  I  L  L  F  L  N  C  K  P  L  L  N  L  *  R  N  W  C  V  V  F  K  V  *  V  V  Q  V  G  *  L  S  G  *  I  V  F  L  L  W  L  V  E  Q  *  R  S  I  A  *  R  *  D  *  *  L  F  L  T  F  G  V  I  V  F  C  F  C  F  *  R  L  V  K  T  I  E  </second_frame>
            <third_frame>   W  R  W  C  R  K  *  V  H  T  S  R  W  R  Q  K  V  *  P  F  Q  P  M  A  K  K  F  R  K  V  T  C  P  Y  K  R  H  F  P  E  H  F  S  L  V  F  A  T  *  *  T  L  F  K  N  S  C  K  G  *  Y  K  A  K  A  E  S  F  L  G  Q  Q  Q  Y  L  E  L  F  V  *  L  F  R  N  L  F  S  C  S  *  I  V  N  H  S  *  I  Y  K  G  I  G  V  L  C  S  K  S  R  L  S  R  W  D  S  L  V  G  R  L  F  F  Y  F  G  L  L  S  N  R  G  L  L  L  N  G  K  I  D  N  S  F  L  R  L  V  *  S  C  F  A  F  A  F  E  D  *  *  K  R  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0144J05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="27094" PGL_stop="26287"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27094" e_stop="26287"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="27094" e_stop="26287" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27094" stop="26287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTACAAAAGGTTTGACAGCTATATGGCGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAAGGATGATTCGTTCATCTATCTGGTGCTTTATGTAGATGATATGCTGATAGCTGCAAAGAAGAAGTATGACATTCATAAGCTGAAGGGTTTACTTAGTGCGGAGTTTGAGATGAAGGATCTGGGAGCTGCTCGGAAGATTCTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCTATTGATAACCCTAGTGCTGCCAATATCCACCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGTCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGTAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  T  K  G  L  T  A  I  W  R  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  R  M  I  R  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  I  S  *  R  V  Y  L  V  R  S  L  R  *  R  I  W  E  L  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  L  L  I  T  L  V  L  P  I  S  T  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  S  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  *  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  Q  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  G  *  F  V  H  L  S  G  A  L  C  R  *  Y  A  D  S  C  K  E  E  V  *  H  S  *  A  E  G  F  T  *  C  G  V  *  D  E  G  S  G  S  C  S  E  D  S  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  Y  *  *  P  *  C  C  Q  Y  P  P  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  A  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  K  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  H  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  N  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  V  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  V  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0144J05.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27092" stop="26289"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMAKLGYTRSSYDCCVYYNRLKDDSFIYLVLYVDDMLIAAKKKYDIHKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDNPSAANIHLTAMFAPQSEEEKEYMSRVPYASVVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKVT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="27753" PGL_stop="27105"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27753" e_stop="27105"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="27753" e_stop="27105" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27753" stop="27105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27752" stop="27368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTGTGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATGCATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATATAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTACACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  R  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  C  I  *  A  V  Y  L  Q  R  S  H  F  K  S  *  F  *  K  M  V  C  C  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  Y  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  Y  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  C  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  A  S  E  P  S  T  Y  K  E  A  I  L  S  P  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  I  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  T  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  Q  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  V  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  M  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  L  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  *  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0144J05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27752" stop="27105"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRCGFEDMVGYALQVAEEVDASEPSTYKEAILSPDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYIARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVTHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="41673" PGL_stop="42289"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41673" e_stop="42289"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="41673" e_stop="42289" e_length="617"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41673" stop="42289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288383" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAACTTGTGGGGGAATAATTTTGTCAGCGATTCAACATTGAGCTTCCTTGAATCATTGACAAACTGTAGGAATCTAAGAGTACTCACGCTTGGTGGTAATCCGTTGGATGGTGTTTTGCCTGCATCTGTTGGTAATTTCTCAAACTCCTTGCAAATTTTTGAAGCATCTAAATGTAAACTGAAGGGTGTCATTTCAAAACAAATTACTAATCTTACTGGATTGACAAGGATGAGTCTGTCGAACAATCAGTTGATAGGTCATATTCCAAAAACAGTGCAAGGAATGCTGAACCTTCAAGAACTTTACCTAGGAAGCAACAAGTTAGAAGGAGCCATACCAGATGTTATCTGCAGTTTACAGTATCTTGGTGCATTAGAATTGTCAGAAAATCAATTTTCTAGTTCCGTTCCACCATGCTTAGGGAATGTTACTAGTTTGAGGACACTCTATCTAGATAACAACAAGCTGGATTCTAGATTACCTGCAAGATTGGGGGGACTTCAAAACATCATAGAGTTCAATATTTCATCCAATTATTTGAGTGGAGAAATTCCGCTAGAGAGCGGAAACTTGAAGGGTGCAACACTGATTGATCTGTCAAATAATTATTTTTCT</gDNA_template>
            <first_frame> S  T  C  G  G  I  I  L  S  A  I  Q  H  *  A  S  L  N  H  *  Q  T  V  G  I  *  E  Y  S  R  L  V  V  I  R  W  M  V  F  C  L  H  L  L  V  I  S  Q  T  P  C  K  F  L  K  H  L  N  V  N  *  R  V  S  F  Q  N  K  L  L  I  L  L  D  *  Q  G  *  V  C  R  T  I  S  *  *  V  I  F  Q  K  Q  C  K  E  C  *  T  F  K  N  F  T  *  E  A  T  S  *  K  E  P  Y  Q  M  L  S  A  V  Y  S  I  L  V  H  *  N  C  Q  K  I  N  F  L  V  P  F  H  H  A  *  G  M  L  L  V  *  G  H  S  I  *  I  T  T  S  W  I  L  D  Y  L  Q  D  W  G  D  F  K  T  S  *  S  S  I  F  H  P  I  I  *  V  E  K  F  R  *  R  A  E  T  *  R  V  Q  H  *  L  I  C  Q  I  I  I  F   </first_frame>
            <second_frame>  Q  L  V  G  E  *  F  C  Q  R  F  N  I  E  L  P  *  I  I  D  K  L  *  E  S  K  S  T  H  A  W  W  *  S  V  G  W  C  F  A  C  I  C  W  *  F  L  K  L  L  A  N  F  *  S  I  *  M  *  T  E  G  C  H  F  K  T  N  Y  *  S  Y  W  I  D  K  D  E  S  V  E  Q  S  V  D  R  S  Y  S  K  N  S  A  R  N  A  E  P  S  R  T  L  P  R  K  Q  Q  V  R  R  S  H  T  R  C  Y  L  Q  F  T  V  S  W  C  I  R  I  V  R  K  S  I  F  *  F  R  S  T  M  L  R  E  C  Y  *  F  E  D  T  L  S  R  *  Q  Q  A  G  F  *  I  T  C  K  I  G  G  T  S  K  H  H  R  V  Q  Y  F  I  Q  L  F  E  W  R  N  S  A  R  E  R  K  L  E  G  C  N  T  D  *  S  V  K  *  L  F  F  </second_frame>
            <third_frame>   N  L  W  G  N  N  F  V  S  D  S  T  L  S  F  L  E  S  L  T  N  C  R  N  L  R  V  L  T  L  G  G  N  P  L  D  G  V  L  P  A  S  V  G  N  F  S  N  S  L  Q  I  F  E  A  S  K  C  K  L  K  G  V  I  S  K  Q  I  T  N  L  T  G  L  T  R  M  S  L  S  N  N  Q  L  I  G  H  I  P  K  T  V  Q  G  M  L  N  L  Q  E  L  Y  L  G  S  N  K  L  E  G  A  I  P  D  V  I  C  S  L  Q  Y  L  G  A  L  E  L  S  E  N  Q  F  S  S  S  V  P  P  C  L  G  N  V  T  S  L  R  T  L  Y  L  D  N  N  K  L  D  S  R  L  P  A  R  L  G  G  L  Q  N  I  I  E  F  N  I  S  S  N  Y  L  S  G  E  I  P  L  E  S  G  N  L  K  G  A  T  L  I  D  L  S  N  N  Y  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0144J05.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41675" stop="42289"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLWGNNFVSDSTLSFLESLTNCRNLRVLTLGGNPLDGVLPASVGNFSNSLQIFEASKCKLKGVISKQITNLTGLTRMSLSNNQLIGHIPKTVQGMLNLQELYLGSNKLEGAIPDVICSLQYLGALELSENQFSSSVPPCLGNVTSLRTLYLDNNKLDSRLPARLGGLQNIIEFNISSNYLSGEIPLESGNLKGATLIDLSNNYFS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="49086" PGL_stop="48628"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49086" e_stop="48628"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="49086" e_stop="48628" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49086" stop="48628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACACAGTAAAAAAATAGTTTAATTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAATGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACATTGAACTTTGATAGAAGAATCATATATATCTCTAAATAATTTTTTTTAAAAAAAATTAAAAGTAATAAATATAAATTTAAAATAAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGTCATTTTATAACAGCAGGGGTAAATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGCCACTTTTATAACGAGGGGTATATGAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCTTTTTCCCTTTTATATATAACTATAA</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  L  R  I  R  N  *  I  T  I  H  S  K  K  I  V  *  F  F  Y  L  N  *  G  M  K  E  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  *  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  I  S  K  *  F  F  L  K  K  I  K  S  N  K  Y  K  F  K  I  N  F  L  T  S  V  K  *  R  V  Y  V  S  H  F  I  T  A  G  V  N  V  S  R  L  Y  N  G  K  G  I  Y  E  P  L  L  *  R  G  V  Y  E  L  Q  M  T  K  L  R  G  I  S  D  L  F  P  F  Y  I  *  L  * </first_frame>
            <second_frame>  Y  C  R  *  P  N  F  F  F  E  Y  E  I  K  L  Q  Y  T  V  K  K  *  F  N  F  F  I  *  T  K  E  *  K  K  K  T  K  *  E  *  E  T  Q  I  I  I  I  N  E  V  K  K  *  F  M  Y  E  K  N  *  N  I  H  *  T  L  I  E  E  S  Y  I  S  L  N  N  F  F  *  K  K  L  K  V  I  N  I  N  L  K  *  I  F  *  L  P  L  N  E  G  Y  M  *  V  I  L  *  Q  Q  G  *  M  *  A  V  C  I  T  V  R  A  Y  M  S  H  F  Y  N  E  G  Y  M  S  S  K  *  Q  S  *  G  V  Y  Q  T  F  F  P  F  I  Y  N  Y   </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  S  S  N  T  K  L  N  Y  N  T  Q  *  K  N  S  L  I  F  L  F  K  L  R  N  E  R  K  K  Q  N  K  N  K  K  L  K  *  L  *  *  M  K  S  K  N  N  L  C  M  K  K  I  K  I  Y  I  E  L  *  *  K  N  H  I  Y  L  *  I  I  F  F  K  K  N  *  K  *  *  I  *  I  *  N  K  F  F  N  F  R  *  M  K  G  I  C  E  S  F  Y  N  S  R  G  K  C  E  P  F  V  *  R  *  G  H  I  *  A  T  F  I  T  R  G  I  *  A  P  N  D  K  V  E  G  Y  I  R  P  F  S  L  L  Y  I  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0144J05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="65452" PGL_stop="72785"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65452" e_stop="65696"/>
            <exon e_start="66982" e_stop="67166"/>
            <exon e_start="67566" e_stop="67755"/>
            <exon e_start="68732" e_stop="68883"/>
            <exon e_start="69555" e_stop="69670"/>
            <exon e_start="69764" e_stop="70010"/>
            <exon e_start="70089" e_stop="70145"/>
            <exon e_start="70279" e_stop="70431"/>
            <exon e_start="71153" e_stop="71233"/>
            <exon e_start="71512" e_stop="71598"/>
            <exon e_start="71880" e_stop="71884"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.998" e_score="0.976"/>
          <exon-intron don_prob="0.950" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.625" e_score="0.993"/>
          <exon-intron don_prob="0.972" acc_prob="0.885" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.612" e_score="0.996"/>
          <exon-intron don_prob="0.993" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.966" e_score="0.989"/>
          <exon-only e_score="0.400"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="65452" e_stop="65696" e_length="245"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.998">
            <gDNA_intron_boundary i_start="65697" i_stop="66981" i_length="1285"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66982" e_stop="67166" e_length="185"/>
          </exon>
          <intron i_serial="2" don_prob="0.950" acc_prob="0.992">
            <gDNA_intron_boundary i_start="67167" i_stop="67565" i_length="399"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67566" e_stop="67755" e_length="190"/>
          </exon>
          <intron i_serial="3" don_prob="0.949" acc_prob="0.968">
            <gDNA_intron_boundary i_start="67756" i_stop="68731" i_length="976"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="68732" e_stop="68883" e_length="152"/>
          </exon>
          <intron i_serial="4" don_prob="0.950" acc_prob="0.625">
            <gDNA_intron_boundary i_start="68884" i_stop="69554" i_length="671"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69555" e_stop="69670" e_length="116"/>
          </exon>
          <intron i_serial="5" don_prob="0.972" acc_prob="0.885">
            <gDNA_intron_boundary i_start="69671" i_stop="69763" i_length="93"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="69764" e_stop="70010" e_length="247"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.612">
            <gDNA_intron_boundary i_start="70011" i_stop="70088" i_length="78"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="70089" e_stop="70145" e_length="57"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.942">
            <gDNA_intron_boundary i_start="70146" i_stop="70278" i_length="133"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="70279" e_stop="70431" e_length="153"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="70432" i_stop="71152" i_length="721"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="71153" e_stop="71233" e_length="81"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="71234" i_stop="71511" i_length="278"/>
          </intron>
          <exon e_serial="10" e_score="0.989">
            <gDNA_exon_boundary e_start="71512" e_stop="71598" e_length="87"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.966">
            <gDNA_intron_boundary i_start="71599" i_stop="71879" i_length="281"/>
          </intron>
          <exon e_serial="11" e_score="0.400">
            <gDNA_exon_boundary e_start="71880" e_stop="71884" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65452" stop="65696"/>
              <exon start="66982" stop="67166"/>
              <exon start="67566" stop="67755"/>
              <exon start="68732" stop="68845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65537" stop="65696"/>
              <exon start="66982" stop="67166"/>
              <exon start="67566" stop="67755"/>
              <exon start="68732" stop="68825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65537" stop="65696"/>
              <exon start="66982" stop="67166"/>
              <exon start="67566" stop="67719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65547" stop="65696"/>
              <exon start="66982" stop="67166"/>
              <exon start="67566" stop="67749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65549" stop="65696"/>
              <exon start="66982" stop="67166"/>
              <exon start="67566" stop="67755"/>
              <exon start="68732" stop="68838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65639" stop="65696"/>
              <exon start="66982" stop="67166"/>
              <exon start="67566" stop="67755"/>
              <exon start="68732" stop="68816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67611" stop="67755"/>
              <exon start="68732" stop="68883"/>
              <exon start="69555" stop="69670"/>
              <exon start="69764" stop="69842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68768" stop="68883"/>
              <exon start="69555" stop="69670"/>
              <exon start="69764" stop="69969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68833" stop="68883"/>
              <exon start="69555" stop="69670"/>
              <exon start="69764" stop="70010"/>
              <exon start="70089" stop="70145"/>
              <exon start="70279" stop="70431"/>
              <exon start="71153" stop="71233"/>
              <exon start="71512" stop="71598"/>
              <exon start="71880" stop="71884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701552" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTCTGCAACATATAACCGTCAAATTCCATTTCTTTCACCATTTTTTCAAAGCTCAAATGCTGTAAACACTCATGAAAACCCTAGCCGTATCTCATCACCGACCGGTTATCTCCGGCACCGGTCACCGCTCCTCCATTTTCTCCGGTCACAGGGCTACTTCGCTCTCTTTCTCTAGGTCCCCTGTATCGGCTGCTCGACTTCGGATTCTCAAATGCTCCGCTGCTATTTCTCCTCCTTCATTAG : TGGACGACTCAGTGAAGTTCAAGGAGGCTGCCAAGCATGGGAATTTGATCCCCCTCTACAGGTCTATATTCTCCGATCACTTAACTCCGGTCCTTGCTTACCGCTGTCTAGTGAAGGAAGATGATAGGGAAGCTCCGAGCTTCTTGTTCGAGTCTGTAGAGCCTGGTTTGAAAGCTTCTAATGTT : GGTCGATACAGTGTGATTGGGGCCCAGCCAACAATGGAAATTGTTGCAAAAGAGAACATGGTGACAATTATGGATCACCTTGAAGGAAGCAGAACAGAGGAATTTGAGGAAGATCCAATGAGCATTCCTCGTAGGATTATGGAAAAATGGAAACCTCAATGCATAAATGAGCTTCCTGAAGCATTTTGTG : GAGGTTGGGTTGGTTTCTTCTCATATGATACTGTGCGTTACGTAGAGAAAAAGAAGCTACCTTTCTCAAATGCTCCAATGGATGATAGGAACCTTCCTGATCTTCATCTAGGACTTTATGATGATGTAATTGTGTTTGATCATGTGGAAAAG : AAAGCATTTGTCATACATTGGGTGCGGTTAGATCGCTTTGCTTCAGTAGAGGAGGCCTACAATGATGGTACAACCAGATTAGAAGCTTTGTTGTCTAGAGTACATGATATTGTACC : TCCTACACTGGCTTCAGGGTCGATAAAACTTCATACTAGTCTATTTGGTACTTCATTGAAAAATTCAACCATGACAAGCGAAGACTACCAGAAGGCTGTTTTAAAGGCCAAGGAACATATCCTTGCTGGGGACATTTTCCAAATTGTTCTTAGTCAACGTTTTGAAAGACGAACCTTTGCAGATCCATTTGAAGTATACAGAGCACTAAGAATCGTAAATCCAAGTCCTTATATGACTTATCTACAG : GCTCGGGGGTGTATACTTGTTGCTTCTAGTCCTGAAATTCTTACTCGAGTGAAGAAG : AAAACAGTTACCAATCGGCCCCTAGCAGGGACTATTAGAAGAGGTAAGACACTTGAGGAAGATTATATGCTGGAAAATCAACTTTTGCACGACGAGAAACAGTGTGCAGAGCATATAATGCTGGTTGACTTGGGAAGAAATGATGTTGGAAAG : GTCTCTAAGCCTGGTTCGGTGAAAGTTGAGAAACTAATGAACATTGAACGGTATTCCCATGTCATGCACATCAGCTCTACG : GTTACTGGAGAGCTACTTGACCATTTGAGTAGCTGGGATGCTCTGCGTGCAGCCCTGCCTGTTGGAACCGTTAGTGGAGCGCCTAAG : TGAAG</gDNA_template>
            <first_frame> T  S  A  T  Y  N  R  Q  I  P  F  L  S  P  F  F  Q  S  S  N  A  V  N  T  H  E  N  P  S  R  I  S  S  P  T  G  Y  L  R  H  R  S  P  L  L  H  F  L  R  S  Q  G  Y  F  A  L  F  L  *  V  P  C  I  G  C  S  T  S  D  S  Q  M  L  R  C  Y  F  S  S  F  I  S :   G  R  L  S  E  V  Q  G  G  C  Q  A  W  E  F  D  P  P  L  Q  V  Y  I  L  R  S  L  N  S  G  P  C  L  P  L  S  S  E  G  R  *  *  G  S  S  E  L  L  V  R  V  C  R  A  W  F  E  S  F  *  C   : W  S  I  Q  C  D  W  G  P  A  N  N  G  N  C  C  K  R  E  H  G  D  N  Y  G  S  P  *  R  K  Q  N  R  G  I  *  G  R  S  N  E  H  S  S  *  D  Y  G  K  M  E  T  S  M  H  K  *  A  S  *  S  I  L  W :   R  L  G  W  F  L  L  I  *  Y  C  A  L  R  R  E  K  E  A  T  F  L  K  C  S  N  G  *  *  E  P  S  *  S  S  S  R  T  L  *  *  C  N  C  V  *  S  C  G  K   : E  S  I  C  H  T  L  G  A  V  R  S  L  C  F  S  R  G  G  L  Q  *  W  Y  N  Q  I  R  S  F  V  V  *  S  T  *  Y  C  T  :  S  Y  T  G  F  R  V  D  K  T  S  Y  *  S  I  W  Y  F  I  E  K  F  N  H  D  K  R  R  L  P  E  G  C  F  K  G  Q  G  T  Y  P  C  W  G  H  F  P  N  C  S  *  S  T  F  *  K  T  N  L  C  R  S  I  *  S  I  Q  S  T  K  N  R  K  S  K  S  L  Y  D  L  S  T   : G  S  G  V  Y  T  C  C  F  *  S  *  N  S  Y  S  S  E  E   : E  N  S  Y  Q  S  A  P  S  R  D  Y  *  K  R  *  D  T  *  G  R  L  Y  A  G  K  S  T  F  A  R  R  E  T  V  C  R  A  Y  N  A  G  *  L  G  K  K  *  C  W  K   : G  L  *  A  W  F  G  E  S  *  E  T  N  E  H  *  T  V  F  P  C  H  A  H  Q  L  Y   : G  Y  W  R  A  T  *  P  F  E  *  L  G  C  S  A  C  S  P  A  C  W  N  R  *  W  S  A  *   : V  K </first_frame>
            <second_frame>  P  L  Q  H  I  T  V  K  F  H  F  F  H  H  F  F  K  A  Q  M  L  *  T  L  M  K  T  L  A  V  S  H  H  R  P  V  I  S  G  T  G  H  R  S  S  I  F  S  G  H  R  A  T  S  L  S  F  S  R  S  P  V  S  A  A  R  L  R  I  L  K  C  S  A  A  I  S  P  P  S  L   : V  D  D  S  V  K  F  K  E  A  A  K  H  G  N  L  I  P  L  Y  R  S  I  F  S  D  H  L  T  P  V  L  A  Y  R  C  L  V  K  E  D  D  R  E  A  P  S  F  L  F  E  S  V  E  P  G  L  K  A  S  N  V  :  G  R  Y  S  V  I  G  A  Q  P  T  M  E  I  V  A  K  E  N  M  V  T  I  M  D  H  L  E  G  S  R  T  E  E  F  E  E  D  P  M  S  I  P  R  R  I  M  E  K  W  K  P  Q  C  I  N  E  L  P  E  A  F  C   : G  G  W  V  G  F  F  S  Y  D  T  V  R  Y  V  E  K  K  K  L  P  F  S  N  A  P  M  D  D  R  N  L  P  D  L  H  L  G  L  Y  D  D  V  I  V  F  D  H  V  E  K  :  K  A  F  V  I  H  W  V  R  L  D  R  F  A  S  V  E  E  A  Y  N  D  G  T  T  R  L  E  A  L  L  S  R  V  H  D  I  V  P :   P  T  L  A  S  G  S  I  K  L  H  T  S  L  F  G  T  S  L  K  N  S  T  M  T  S  E  D  Y  Q  K  A  V  L  K  A  K  E  H  I  L  A  G  D  I  F  Q  I  V  L  S  Q  R  F  E  R  R  T  F  A  D  P  F  E  V  Y  R  A  L  R  I  V  N  P  S  P  Y  M  T  Y  L  Q  :  A  R  G  C  I  L  V  A  S  S  P  E  I  L  T  R  V  K  K  :  K  T  V  T  N  R  P  L  A  G  T  I  R  R  G  K  T  L  E  E  D  Y  M  L  E  N  Q  L  L  H  D  E  K  Q  C  A  E  H  I  M  L  V  D  L  G  R  N  D  V  G  K  :  V  S  K  P  G  S  V  K  V  E  K  L  M  N  I  E  R  Y  S  H  V  M  H  I  S  S  T  :  V  T  G  E  L  L  D  H  L  S  S  W  D  A  L  R  A  A  L  P  V  G  T  V  S  G  A  P  K  :  *   </second_frame>
            <third_frame>   L  C  N  I  *  P  S  N  S  I  S  F  T  I  F  S  K  L  K  C  C  K  H  S  *  K  P  *  P  Y  L  I  T  D  R  L  S  P  A  P  V  T  A  P  P  F  S  P  V  T  G  L  L  R  S  L  S  L  G  P  L  Y  R  L  L  D  F  G  F  S  N  A  P  L  L  F  L  L  L  H  *  :  W  T  T  Q  *  S  S  R  R  L  P  S  M  G  I  *  S  P  S  T  G  L  Y  S  P  I  T  *  L  R  S  L  L  T  A  V  *  *  R  K  M  I  G  K  L  R  A  S  C  S  S  L  *  S  L  V  *  K  L  L  M  L :   V  D  T  V  *  L  G  P  S  Q  Q  W  K  L  L  Q  K  R  T  W  *  Q  L  W  I  T  L  K  E  A  E  Q  R  N  L  R  K  I  Q  *  A  F  L  V  G  L  W  K  N  G  N  L  N  A  *  M  S  F  L  K  H  F  V  :  E  V  G  L  V  S  S  H  M  I  L  C  V  T  *  R  K  R  S  Y  L  S  Q  M  L  Q  W  M  I  G  T  F  L  I  F  I  *  D  F  M  M  M  *  L  C  L  I  M  W  K  R :   K  H  L  S  Y  I  G  C  G  *  I  A  L  L  Q  *  R  R  P  T  M  M  V  Q  P  D  *  K  L  C  C  L  E  Y  M  I  L  Y   : L  L  H  W  L  Q  G  R  *  N  F  I  L  V  Y  L  V  L  H  *  K  I  Q  P  *  Q  A  K  T  T  R  R  L  F  *  R  P  R  N  I  S  L  L  G  T  F  S  K  L  F  L  V  N  V  L  K  D  E  P  L  Q  I  H  L  K  Y  T  E  H  *  E  S  *  I  Q  V  L  I  *  L  I  Y  R :   L  G  G  V  Y  L  L  L  L  V  L  K  F  L  L  E  *  R  R :   K  Q  L  P  I  G  P  *  Q  G  L  L  E  E  V  R  H  L  R  K  I  I  C  W  K  I  N  F  C  T  T  R  N  S  V  Q  S  I  *  C  W  L  T  W  E  E  M  M  L  E  R :   S  L  S  L  V  R  *  K  L  R  N  *  *  T  L  N  G  I  P  M  S  C  T  S  A  L  R :   L  L  E  S  Y  L  T  I  *  V  A  G  M  L  C  V  Q  P  C  L  L  E  P  L  V  E  R  L  S :   E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0144J05.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65519" stop="65696"/>
                    <exon start="66982" stop="67166"/>
                    <exon start="67566" stop="67755"/>
                    <exon start="68732" stop="68883"/>
                    <exon start="69555" stop="69670"/>
                    <exon start="69764" stop="70010"/>
                    <exon start="70089" stop="70145"/>
                    <exon start="70279" stop="70431"/>
                    <exon start="71153" stop="71233"/>
                    <exon start="71512" stop="71598"/>
                    <exon start="71880" stop="71882"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1446</number_coding_nucleotides>
                  <number_encoded_amino_acids>482</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLMKTLAVSHHRPVISGTGHRSSIFSGHRATSLSFSRSPVSAARLRILKCSAAISPPSLVDDSVKFKEAAKHGNLIPLYRSIFSDHLTPVLAYRCLVKEDDREAPSFLFESVEPGLKASNVGRYSVIGAQPTMEIVAKENMVTIMDHLEGSRTEEFEEDPMSIPRRIMEKWKPQCINELPEAFCGGWVGFFSYDTVRYVEKKKLPFSNAPMDDRNLPDLHLGLYDDVIVFDHVEKKAFVIHWVRLDRFASVEEAYNDGTTRLEALLSRVHDIVPPTLASGSIKLHTSLFGTSLKNSTMTSEDYQKAVLKAKEHILAGDIFQIVLSQRFERRTFADPFEVYRALRIVNPSPYMTYLQARGCILVASSPEILTRVKKKTVTNRPLAGTIRRGKTLEEDYMLENQLLHDEKQCAEHIMLVDLGRNDVGKVSKPGSVKVEKLMNIERYSHVMHISSTVTGELLDHLSSWDALRAALPVGTVSGAPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="70336" e_stop="70431"/>
            <exon e_start="71153" e_stop="71233"/>
            <exon e_start="71512" e_stop="71598"/>
            <exon e_start="72077" e_stop="72785"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70336" e_stop="70431" e_length="96"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="70432" i_stop="71152" i_length="721"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71153" e_stop="71233" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="71234" i_stop="71511" i_length="278"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71512" e_stop="71598" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="71599" i_stop="72076" i_length="478"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="72077" e_stop="72785" e_length="709"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70336" stop="70431"/>
              <exon start="71153" stop="71233"/>
              <exon start="71512" stop="71598"/>
              <exon start="72077" stop="72430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70337" stop="70431"/>
              <exon start="71153" stop="71233"/>
              <exon start="71512" stop="71598"/>
              <exon start="72077" stop="72384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70385" stop="70431"/>
              <exon start="71153" stop="71233"/>
              <exon start="71512" stop="71598"/>
              <exon start="72077" stop="72522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411731" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72210" stop="72785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGATTATATGCTGGAAAATCAACTTTTGCACGACGAGAAACAGTGTGCAGAGCATATAATGCTGGTTGACTTGGGAAGAAATGATGTTGGAAAG : GTCTCTAAGCCTGGTTCGGTGAAAGTTGAGAAACTAATGAACATTGAACGGTATTCCCATGTCATGCACATCAGCTCTACG : GTTACTGGAGAGCTACTTGACCATTTGAGTAGCTGGGATGCTCTGCGTGCAGCCCTGCCTGTTGGAACCGTTAGTGGAGCGCCTAAG : GTAAAAGCCATGGAGCTAATTGATCAACTGGAAGTCACAAGGCGTGGACCATACAGCGGTGGATTTGGAGGAATTTCCTTTACCGGAGAAATGGACATTGCCTTAGCTTTGAGAACCATAGTATTTCCAACTGGAACGCGTTACGACACTATGTACTCGTACAAGGATGTCGACAAGCGACGAGATTGGATTGCTTATCTCCAAGCTGGAGCAGGTATAGTGGCTGATAGTGACCCAGCTGATGAGCAAAATGAATGCGAAAATAAAGCTGCAGCTCTTGTCCGTGCCATTGATCTTGCTGAGTCTTCATTTGTTGACAAATAATAGATGCCGTCCTAGTGTCAGATTTTGTTTCGTCGATTATTTCGTTTCTTGTTGGATGTAGAAAGTTCGTTTTCAATCTGAATAGTCCGTTATGTTGGGAGGTGACTGAAAATCCCCATCCACACACACACTCACAATGTCATAGTCATTGCGTATGTTGGCTTCATCAATTTTAGCAGGGTGTCACAAAGAGCCCAGAATTGGCATTGTGACTTATAGTTCTCTGGCTGTCAATTGATTTCAGTATTTGGCTTTTTTCGGGTTCTGTGGTTGTACCCTAGGGCTATCAGAAACCTAACCTCTCTACTTTTGTAGGATAATATTAGTTTGCATCCTGCCCTCTCCAGACTCAACTTATGGCATTGTACTCTAAATTATGATCTTG</gDNA_template>
            <first_frame> E  D  Y  M  L  E  N  Q  L  L  H  D  E  K  Q  C  A  E  H  I  M  L  V  D  L  G  R  N  D  V  G  K  :  V  S  K  P  G  S  V  K  V  E  K  L  M  N  I  E  R  Y  S  H  V  M  H  I  S  S  T  :  V  T  G  E  L  L  D  H  L  S  S  W  D  A  L  R  A  A  L  P  V  G  T  V  S  G  A  P  K  :  V  K  A  M  E  L  I  D  Q  L  E  V  T  R  R  G  P  Y  S  G  G  F  G  G  I  S  F  T  G  E  M  D  I  A  L  A  L  R  T  I  V  F  P  T  G  T  R  Y  D  T  M  Y  S  Y  K  D  V  D  K  R  R  D  W  I  A  Y  L  Q  A  G  A  G  I  V  A  D  S  D  P  A  D  E  Q  N  E  C  E  N  K  A  A  A  L  V  R  A  I  D  L  A  E  S  S  F  V  D  K  *  *  M  P  S  *  C  Q  I  L  F  R  R  L  F  R  F  L  L  D  V  E  S  S  F  S  I  *  I  V  R  Y  V  G  R  *  L  K  I  P  I  H  T  H  T  H  N  V  I  V  I  A  Y  V  G  F  I  N  F  S  R  V  S  Q  R  A  Q  N  W  H  C  D  L  *  F  S  G  C  Q  L  I  S  V  F  G  F  F  R  V  L  W  L  Y  P  R  A  I  R  N  L  T  S  L  L  L  *  D  N  I  S  L  H  P  A  L  S  R  L  N  L  W  H  C  T  L  N  Y  D  L  </first_frame>
            <second_frame>  K  I  I  C  W  K  I  N  F  C  T  T  R  N  S  V  Q  S  I  *  C  W  L  T  W  E  E  M  M  L  E  R :   S  L  S  L  V  R  *  K  L  R  N  *  *  T  L  N  G  I  P  M  S  C  T  S  A  L  R :   L  L  E  S  Y  L  T  I  *  V  A  G  M  L  C  V  Q  P  C  L  L  E  P  L  V  E  R  L  R :   *  K  P  W  S  *  L  I  N  W  K  S  Q  G  V  D  H  T  A  V  D  L  E  E  F  P  L  P  E  K  W  T  L  P  *  L  *  E  P  *  Y  F  Q  L  E  R  V  T  T  L  C  T  R  T  R  M  S  T  S  D  E  I  G  L  L  I  S  K  L  E  Q  V  *  W  L  I  V  T  Q  L  M  S  K  M  N  A  K  I  K  L  Q  L  L  S  V  P  L  I  L  L  S  L  H  L  L  T  N  N  R  C  R  P  S  V  R  F  C  F  V  D  Y  F  V  S  C  W  M  *  K  V  R  F  Q  S  E  *  S  V  M  L  G  G  D  *  K  S  P  S  T  H  T  L  T  M  S  *  S  L  R  M  L  A  S  S  I  L  A  G  C  H  K  E  P  R  I  G  I  V  T  Y  S  S  L  A  V  N  *  F  Q  Y  L  A  F  F  G  F  C  G  C  T  L  G  L  S  E  T  *  P  L  Y  F  C  R  I  I  L  V  C  I  L  P  S  P  D  S  T  Y  G  I  V  L  *  I  M  I  L </second_frame>
            <third_frame>   R  L  Y  A  G  K  S  T  F  A  R  R  E  T  V  C  R  A  Y  N  A  G  *  L  G  K  K  *  C  W  K   : G  L  *  A  W  F  G  E  S  *  E  T  N  E  H  *  T  V  F  P  C  H  A  H  Q  L  Y   : G  Y  W  R  A  T  *  P  F  E  *  L  G  C  S  A  C  S  P  A  C  W  N  R  *  W  S  A  *   : G  K  S  H  G  A  N  *  S  T  G  S  H  K  A  W  T  I  Q  R  W  I  W  R  N  F  L  Y  R  R  N  G  H  C  L  S  F  E  N  H  S  I  S  N  W  N  A  L  R  H  Y  V  L  V  Q  G  C  R  Q  A  T  R  L  D  C  L  S  P  S  W  S  R  Y  S  G  *  *  *  P  S  *  *  A  K  *  M  R  K  *  S  C  S  S  C  P  C  H  *  S  C  *  V  F  I  C  *  Q  I  I  D  A  V  L  V  S  D  F  V  S  S  I  I  S  F  L  V  G  C  R  K  F  V  F  N  L  N  S  P  L  C  W  E  V  T  E  N  P  H  P  H  T  H  S  Q  C  H  S  H  C  V  C  W  L  H  Q  F  *  Q  G  V  T  K  S  P  E  L  A  L  *  L  I  V  L  W  L  S  I  D  F  S  I  W  L  F  S  G  S  V  V  V  P  *  G  Y  Q  K  P  N  L  S  T  F  V  G  *  Y  *  F  A  S  C  P  L  Q  T  Q  L  M  A  L  Y  S  K  L  *  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0144J05.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70336" stop="70431"/>
                    <exon start="71153" stop="71233"/>
                    <exon start="71512" stop="71598"/>
                    <exon start="72077" stop="72400"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EDYMLENQLLHDEKQCAEHIMLVDLGRNDVGKVSKPGSVKVEKLMNIERYSHVMHISSTVTGELLDHLSSWDALRAALPVGTVSGAPKVKAMELIDQLEVTRRGPYSGGFGGISFTGEMDIALALRTIVFPTGTRYDTMYSYKDVDKRRDWIAYLQAGAGIVADSDPADEQNECENKAAALVRAIDLAESSFVDK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="77263" PGL_stop="82656"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77263" e_stop="77302"/>
            <exon e_start="78828" e_stop="79149"/>
            <exon e_start="79394" e_stop="79521"/>
            <exon e_start="80158" e_stop="80984"/>
            <exon e_start="81118" e_stop="81800"/>
            <exon e_start="81907" e_stop="82656"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.876" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.509" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.993"/>
          <exon-intron don_prob="0.997" acc_prob="0.413" e_score="0.984"/>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77263" e_stop="77302" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.977">
            <gDNA_intron_boundary i_start="77303" i_stop="78827" i_length="1525"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78828" e_stop="79149" e_length="322"/>
          </exon>
          <intron i_serial="2" don_prob="0.876" acc_prob="0.953">
            <gDNA_intron_boundary i_start="79150" i_stop="79393" i_length="244"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79394" e_stop="79521" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.509" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79522" i_stop="80157" i_length="636"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="80158" e_stop="80984" e_length="827"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="80985" i_stop="81117" i_length="133"/>
          </intron>
          <exon e_serial="5" e_score="0.984">
            <gDNA_exon_boundary e_start="81118" e_stop="81800" e_length="683"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.413">
            <gDNA_intron_boundary i_start="81801" i_stop="81906" i_length="106"/>
          </intron>
          <exon e_serial="6" e_score="0.950">
            <gDNA_exon_boundary e_start="81907" e_stop="82656" e_length="750"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77263" stop="77302"/>
              <exon start="78828" stop="79149"/>
              <exon start="79394" stop="79521"/>
              <exon start="80158" stop="80984"/>
              <exon start="81118" stop="81800"/>
              <exon start="81907" stop="82106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77269" stop="77302"/>
              <exon start="78828" stop="79149"/>
              <exon start="79394" stop="79521"/>
              <exon start="80158" stop="80233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77273" stop="77302"/>
              <exon start="78828" stop="79149"/>
              <exon start="79394" stop="79521"/>
              <exon start="80158" stop="80186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78828" stop="79149"/>
              <exon start="79394" stop="79521"/>
              <exon start="80158" stop="80280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78828" stop="79017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78835" stop="79149"/>
              <exon start="79394" stop="79521"/>
              <exon start="80158" stop="80561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78854" stop="79149"/>
              <exon start="79394" stop="79521"/>
              <exon start="80158" stop="80403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78859" stop="79149"/>
              <exon start="79394" stop="79521"/>
              <exon start="80158" stop="80433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78993" stop="79149"/>
              <exon start="79394" stop="79521"/>
              <exon start="80158" stop="80701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79408" stop="79521"/>
              <exon start="80158" stop="80942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79409" stop="79521"/>
              <exon start="80158" stop="80561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80222" stop="80652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80417" stop="80933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80883" stop="80984"/>
              <exon start="81118" stop="81614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81246" stop="81800"/>
              <exon start="81907" stop="82108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585928" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81327" stop="81790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81461" stop="81800"/>
              <exon start="81907" stop="82096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81493" stop="81800"/>
              <exon start="81907" stop="82104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81634" stop="81800"/>
              <exon start="81907" stop="82114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81744" stop="81800"/>
              <exon start="81907" stop="82524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82163" stop="82656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335976" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTCTTCTCATCATTTACAGCTCTAATTCATTTGCTTCAG : ACGTTGATTGGAAGATGGCGTCTGTCCAAACTGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATAATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCGGTTACAGGGAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAGAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAG : TGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTG : GACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGGAACTCTGCTGTTGTAAGCTCGATTGAAGAAGAAGTTCACAAGCTTCAATGGGCAACAATGTGGGGTGCAGATACGATTATGGATCTCTCTACTGGTCGTCACATCCACGAGACTCGTGAGTGGATCTTGCGTAATTCTGCTGTACCAGTAGGCACTGTGCCAATTTACCAAGCACTAGAAAAAGTAAACGGGATTGCTGAGAATCTTAGTTGGGAAGTGTTTAGGGAGACCTTAATTGAACAAGCTGAGCAAGGAGTTGATTACTTCACAATCCATGCCGGAGTCCTTCTCAGGTACATCCCACTGACAGCAAAACGGATGACCGGAATTGTTTCTCGTGGAGGCTCAATTCATGCAAAGTGGTGCTTAGCTTATCACAAGGAGAATTTCGCTTATGAACATTGGGATGACATACTTGACATCTGTAATCAGTACGATATATCGTTATCAATTGGTGATGGACTGAGACCTGGTTCAATTTATGATGCAAATGACACCGCTCAGTTTGCTGAGCTCTTGACTCAAGGGGAGCTGACTCGCCGAGCTTGGGAAAAGGATGTACAG : GTTATGAATGAAGGACCTGGACATGTACCAATGCATAAGATTCCCGAGAACATGCAGAAACAGCTAGAGTGGTGTAATGAAGCACCATTTTACACTCTTGGACCATTGACAACTGATATAGCTCCCGGATATGATCATATCACCTCAGCTATCGGTGCAGCCAATATAGGAGCACTCGGGACTGCACTTCTGTGTTACGTCACTCCAAAAGAGCATCTTGGTCTGCCTAATCGCGATGACGTGAAGACAGGTGTAATATCATATAAGATAGCTGCTCATGCAGCTGATCTTGCAAAAGGTCACCCGCTATCTCAAGCCTGGGATGATGCACTTAGCAAGGCAAGATTTGAGTTCAGATGGATGGACCAATTCGCTTTATCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCTATGTGCGGGCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGAAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAGAATTACATCAACTCTTTGAAGAGCCAAAG : GAATGTGTAAAGATCGAAAACTGGCTCACAGATTTCTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAGGTAAGTATCTAGTTTGGTACTGTTAAATAAACTGAGACAACAGCCTTGTTCAATGAAACTCTCCTTTGTTAGTAATGAGAAAAACGCGTATTTTCTTGTGTTCAGTCTTTTATATCTTTTAAGTTTTATTGACACGAGAAAGCACCGGGGGTGTCTGTGTCAGCTTCAAATGCTGACTGATCAGGCTGAGAAAGTCCCTTTGAACCTGAACGGGATAATTCCTGCGTAGGGAGCGTGCAATTTCTTTTTTCTTGCTTGCACAGGGATGGCGATTCTCCAAAATGGTTGAAAATTCAAAATTAATCTGATCCTGCTCTTTGCCAGGACCAGTTTATTCACTGTCTATTCAAGACACCATCTTGTATTGTTTGTTTTTTTGGTGTCCTGTACCGCATTGAGGCCTGACTAAATACAGATTCCCGCACTCTGTACATAACAGAGCTCGAATTCGACACCTTTGATTGGTAGTAAAGGGGTATTTATCACTCCATCACGACCCTTGTTGGTAAGGCATATTCGTGTATGCCTCTGAGACGCGATTGGTTACTTACAATTGACCAATTTTCTCATGGTTAGTCTAGCTTTGGTTGGACTATTGAAACATTCAGTAATATGAATGACTCAATTGCATATATACCTTCATATTT</gDNA_template>
            <first_frame> P  L  L  I  I  Y  S  S  N  S  F  A  S   : D  V  D  W  K  M  A  S  V  Q  T  A  L  T  S  L  L  C  K  K  G  N  N  N  P  Q  V  N  V  P  R  S  S  F  L  P  G  F  D  L  T  G  Q  V  A  V  T  G  R  R  E  T  R  F  N  S  F  S  S  P  R  A  T  L  T  F  D  P  P  S  T  D  N  K  E  K  T  K  P  K  H  T  V  D  P  N  A  P  D  F  L  P  L  P  P  F  E  Q  C  F  P  K  S  S  K  E  Y  S :   E  V  M  H  E  E  T  G  H  V  L  K  V  P  F  R  R  I  H  L  S  G  D  E  P  H  F  D  T  Y  D  T  S  G  P  Q  G  V  N  P  R  V   : G  L  P  K  L  R  T  E  W  I  N  R  R  E  K  L  G  G  P  R  Y  T  Q  M  F  Y  A  K  Q  G  I  I  T  E  E  M  V  Y  C  A  A  R  E  K  M  D  P  E  F  V  R  S  E  V  A  R  G  R  A  I  I  P  S  N  K  K  H  P  E  L  E  P  M  I  V  G  R  K  F  L  V  K  V  N  A  N  I  G  N  S  A  V  V  S  S  I  E  E  E  V  H  K  L  Q  W  A  T  M  W  G  A  D  T  I  M  D  L  S  T  G  R  H  I  H  E  T  R  E  W  I  L  R  N  S  A  V  P  V  G  T  V  P  I  Y  Q  A  L  E  K  V  N  G  I  A  E  N  L  S  W  E  V  F  R  E  T  L  I  E  Q  A  E  Q  G  V  D  Y  F  T  I  H  A  G  V  L  L  R  Y  I  P  L  T  A  K  R  M  T  G  I  V  S  R  G  G  S  I  H  A  K  W  C  L  A  Y  H  K  E  N  F  A  Y  E  H  W  D  D  I  L  D  I  C  N  Q  Y  D  I  S  L  S  I  G  D  G  L  R  P  G  S  I  Y  D  A  N  D  T  A  Q  F  A  E  L  L  T  Q  G  E  L  T  R  R  A  W  E  K  D  V  Q  :  V  M  N  E  G  P  G  H  V  P  M  H  K  I  P  E  N  M  Q  K  Q  L  E  W  C  N  E  A  P  F  Y  T  L  G  P  L  T  T  D  I  A  P  G  Y  D  H  I  T  S  A  I  G  A  A  N  I  G  A  L  G  T  A  L  L  C  Y  V  T  P  K  E  H  L  G  L  P  N  R  D  D  V  K  T  G  V  I  S  Y  K  I  A  A  H  A  A  D  L  A  K  G  H  P  L  S  Q  A  W  D  D  A  L  S  K  A  R  F  E  F  R  W  M  D  Q  F  A  L  S  L  D  P  V  T  A  M  S  F  H  D  E  T  L  P  A  D  G  A  K  V  A  H  F  C  S  M  C  G  P  K  F  C  S  M  K  I  T  E  D  I  R  K  Y  A  E  N  H  G  Y  G  N  A  E  E  A  I  Q  Q  G  M  D  A  M  S  A  A  F  Q  A  A  K  K  T  I  S  G  E  Q  H  G  E  V  G  G  E  I  Y  L  P  E  N  Y  I  N  S  L  K  S  Q  R :   N  V  *  R  S  K  T  G  S  Q  I  S  E  V  I  T  T  P  S  A  S  Q  G  G  G  S  R  S  L  I  I  K  C  *  V  S  I  *  F  G  T  V  K  *  T  E  T  T  A  L  F  N  E  T  L  L  C  *  *  *  E  K  R  V  F  S  C  V  Q  S  F  I  S  F  K  F  Y  *  H  E  K  A  P  G  V  S  V  S  A  S  N  A  D  *  S  G  *  E  S  P  F  E  P  E  R  D  N  S  C  V  G  S  V  Q  F  L  F  S  C  L  H  R  D  G  D  S  P  K  W  L  K  I  Q  N  *  S  D  P  A  L  C  Q  D  Q  F  I  H  C  L  F  K  T  P  S  C  I  V  C  F  F  G  V  L  Y  R  I  E  A  *  L  N  T  D  S  R  T  L  Y  I  T  E  L  E  F  D  T  F  D  W  *  *  R  G  I  Y  H  S  I  T  T  L  V  G  K  A  Y  S  C  M  P  L  R  R  D  W  L  L  T  I  D  Q  F  S  H  G  *  S  S  F  G  W  T  I  E  T  F  S  N  M  N  D  S  I  A  Y  I  P  S  Y   </first_frame>
            <second_frame>  L  F  S  S  F  T  A  L  I  H  L  L  Q  :  T  L  I  G  R  W  R  L  S  K  L  L  *  H  H  S  Y  A  R  K  G  T  I  I  H  K  *  M  F  Q  E  V  P  S  C  Q  G  L  I  *  Q  G  K  L  R  L  Q  G  E  G  K  R  V  S  I  L  F  Q  A  R  E  Q  H  L  P  L  I  L  P  V  L  I  I  K  R  R  Q  S  Q  S  T  L  L  I  L  M  L  L  I  S  C  P  F  H  H  S  N  N  A  F  R  K  A  P  R  N  T   : V  K  L  C  M  K  K  L  V  M  Y  S  K  S  H  F  D  V  S  I  F  P  G  M  N  H  I  S  T  L  M  I  P  V  V  L  R  V  L  T  R  A  L  :  D  F  P  S  C  A  R  S  G  L  T  G  G  R  S  *  E  D  Q  G  I  L  K  C  S  M  L  S  R  E  S  *  L  R  K  W  C  T  V  L  L  V  R  R  W  I  R  N  L  *  G  Q  K  L  L  G  A  V  Q  S  S  L  Q  T  R  S  T  L  S  W  S  Q  *  *  *  E  E  S  S  *  *  K  S  M  P  T  S  G  T  L  L  L  *  A  R  L  K  K  K  F  T  S  F  N  G  Q  Q  C  G  V  Q  I  R  L  W  I  S  L  L  V  V  T  S  T  R  L  V  S  G  S  C  V  I  L  L  Y  Q  *  A  L  C  Q  F  T  K  H  *  K  K  *  T  G  L  L  R  I  L  V  G  K  C  L  G  R  P  *  L  N  K  L  S  K  E  L  I  T  S  Q  S  M  P  E  S  F  S  G  T  S  H  *  Q  Q  N  G  *  P  E  L  F  L  V  E  A  Q  F  M  Q  S  G  A  *  L  I  T  R  R  I  S  L  M  N  I  G  M  T  Y  L  T  S  V  I  S  T  I  Y  R  Y  Q  L  V  M  D  *  D  L  V  Q  F  M  M  Q  M  T  P  L  S  L  L  S  S  *  L  K  G  S  *  L  A  E  L  G  K  R  M  Y  R :   L  *  M  K  D  L  D  M  Y  Q  C  I  R  F  P  R  T  C  R  N  S  *  S  G  V  M  K  H  H  F  T  L  L  D  H  *  Q  L  I  *  L  P  D  M  I  I  S  P  Q  L  S  V  Q  P  I  *  E  H  S  G  L  H  F  C  V  T  S  L  Q  K  S  I  L  V  C  L  I  A  M  T  *  R  Q  V  *  Y  H  I  R  *  L  L  M  Q  L  I  L  Q  K  V  T  R  Y  L  K  P  G  M  M  H  L  A  R  Q  D  L  S  S  D  G  W  T  N  S  L  Y  H  W  T  P  L  L  Q  C  P  F  T  T  K  L  Y  Q  P  M  G  L  K  W  H  I  S  A  L  C  A  G  L  S  F  A  P  *  K  *  P  K  I  *  E  S  M  L  K  I  M  V  M  E  M  Q  R  K  P  F  S  R  A  W  M  L  *  V  Q  R  F  K  L  Q  K  K  P  L  V  G  N  N  T  V  R  L  A  V  R  S  T  C  Q  R  I  T  S  T  L  *  R  A  K   : G  M  C  K  D  R  K  L  A  H  R  F  L  K  *  S  Q  L  H  R  P  V  K  E  A  V  V  G  A  S  L  S  S  V  R  *  V  S  S  L  V  L  L  N  K  L  R  Q  Q  P  C  S  M  K  L  S  F  V  S  N  E  K  N  A  Y  F  L  V  F  S  L  L  Y  L  L  S  F  I  D  T  R  K  H  R  G  C  L  C  Q  L  Q  M  L  T  D  Q  A  E  K  V  P  L  N  L  N  G  I  I  P  A  *  G  A  C  N  F  F  F  L  A  C  T  G  M  A  I  L  Q  N  G  *  K  F  K  I  N  L  I  L  L  F  A  R  T  S  L  F  T  V  Y  S  R  H  H  L  V  L  F  V  F  L  V  S  C  T  A  L  R  P  D  *  I  Q  I  P  A  L  C  T  *  Q  S  S  N  S  T  P  L  I  G  S  K  G  V  F  I  T  P  S  R  P  L  L  V  R  H  I  R  V  C  L  *  D  A  I  G  Y  L  Q  L  T  N  F  L  M  V  S  L  A  L  V  G  L  L  K  H  S  V  I  *  M  T  Q  L  H  I  Y  L  H  I  </second_frame>
            <third_frame>   S  S  H  H  L  Q  L  *  F  I  C  F  R :   R  *  L  E  D  G  V  C  P  N  C  F  D  I  T  P  M  Q  E  R  E  Q  *  S  T  S  K  C  S  K  K  F  L  L  A  R  V  *  F  D  R  A  S  C  G  Y  R  E  K  G  N  A  F  Q  F  F  F  K  P  E  S  N  T  Y  L  *  S  S  Q  Y  *  *  *  R  E  D  K  A  K  A  H  C  *  S  *  C  S  *  F  P  A  P  S  T  I  R  T  M  L  S  E  K  L  Q  G  I  Q  :  *  S  Y  A  *  R  N  W  S  C  T  Q  S  P  I  S  T  Y  P  S  F  R  G  *  T  T  F  R  H  L  *  Y  Q  W  S  S  G  C  *  P  A  R  W :   T  S  Q  A  A  H  G  V  D  *  Q  E  G  E  V  R  R  T  K  V  Y  S  N  V  L  C  *  A  G  N  H  N  *  G  N  G  V  L  C  C  S  *  E  D  G  S  G  I  C  E  V  R  S  C  S  G  P  C  N  H  P  F  K  Q  E  A  P  *  V  G  A  N  D  S  R  K  K  V  L  S  E  S  Q  C  Q  H  R  E  L  C  C  C  K  L  D  *  R  R  S  S  Q  A  S  M  G  N  N  V  G  C  R  Y  D  Y  G  S  L  Y  W  S  S  H  P  R  D  S  *  V  D  L  A  *  F  C  C  T  S  R  H  C  A  N  L  P  S  T  R  K  S  K  R  D  C  *  E  S  *  L  G  S  V  *  G  D  L  N  *  T  S  *  A  R  S  *  L  L  H  N  P  C  R  S  P  S  Q  V  H  P  T  D  S  K  T  D  D  R  N  C  F  S  W  R  L  N  S  C  K  V  V  L  S  L  S  Q  G  E  F  R  L  *  T  L  G  *  H  T  *  H  L  *  S  V  R  Y  I  V  I  N  W  *  W  T  E  T  W  F  N  L  *  C  K  *  H  R  S  V  C  *  A  L  D  S  R  G  A  D  S  P  S  L  G  K  G  C  T   : G  Y  E  *  R  T  W  T  C  T  N  A  *  D  S  R  E  H  A  E  T  A  R  V  V  *  *  S  T  I  L  H  S  W  T  I  D  N  *  Y  S  S  R  I  *  S  Y  H  L  S  Y  R  C  S  Q  Y  R  S  T  R  D  C  T  S  V  L  R  H  S  K  R  A  S  W  S  A  *  S  R  *  R  E  D  R  C  N  I  I  *  D  S  C  S  C  S  *  S  C  K  R  S  P  A  I  S  S  L  G  *  C  T  *  Q  G  K  I  *  V  Q  M  D  G  P  I  R  F  I  I  G  P  R  Y  C  N  V  L  S  R  R  N  F  T  S  R  W  G  *  S  G  T  F  L  L  Y  V  R  A  *  V  L  L  H  E  N  N  R  R  Y  K  K  V  C  *  K  S  W  L  W  K  C  R  G  S  H  S  A  G  H  G  C  Y  E  C  S  V  S  S  C  K  K  N  H  *  W  G  T  T  R  *  G  W  R  *  D  L  L  A  R  E  L  H  Q  L  F  E  E  P  K  :  E  C  V  K  I  E  N  W  L  T  D  F  *  S  D  H  N  S  I  G  Q  S  R  R  R  *  *  E  P  H  Y  Q  V  L  G  K  Y  L  V  W  Y  C  *  I  N  *  D  N  S  L  V  Q  *  N  S  P  L  L  V  M  R  K  T  R  I  F  L  C  S  V  F  Y  I  F  *  V  L  L  T  R  E  S  T  G  G  V  C  V  S  F  K  C  *  L  I  R  L  R  K  S  L  *  T  *  T  G  *  F  L  R  R  E  R  A  I  S  F  F  L  L  A  Q  G  W  R  F  S  K  M  V  E  N  S  K  L  I  *  S  C  S  L  P  G  P  V  Y  S  L  S  I  Q  D  T  I  L  Y  C  L  F  F  W  C  P  V  P  H  *  G  L  T  K  Y  R  F  P  H  S  V  H  N  R  A  R  I  R  H  L  *  L  V  V  K  G  Y  L  S  L  H  H  D  P  C  W  *  G  I  F  V  Y  A  S  E  T  R  L  V  T  Y  N  *  P  I  F  S  W  L  V  *  L  W  L  D  Y  *  N  I  Q  *  Y  E  *  L  N  C  I  Y  T  F  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0144J05.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77263" stop="77302"/>
                    <exon start="78828" stop="79149"/>
                    <exon start="79394" stop="79521"/>
                    <exon start="80158" stop="80984"/>
                    <exon start="81118" stop="81800"/>
                    <exon start="81907" stop="81916"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2007</number_coding_nucleotides>
                  <number_encoded_amino_acids>669</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLLIIYSSNSFASDVDWKMASVQTALTSLLCKKGNNNPQVNVPRSSFLPGFDLTGQVAVTGRRETRFNSFSSPRATLTFDPPSTDNKEKTKPKHTVDPNAPDFLPLPPFEQCFPKSSKEYSEVMHEETGHVLKVPFRRIHLSGDEPHFDTYDTSGPQGVNPRVGLPKLRTEWINRREKLGGPRYTQMFYAKQGIITEEMVYCAAREKMDPEFVRSEVARGRAIIPSNKKHPELEPMIVGRKFLVKVNANIGNSAVVSSIEEEVHKLQWATMWGADTIMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVNGIAENLSWEVFRETLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDDILDICNQYDISLSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWEKDVQVMNEGPGHVPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKTGVISYKIAAHAADLAKGHPLSQAWDDALSKARFEFRWMDQFALSLDPVTAMSFHDETLPADGAKVAHFCSMCGPKFCSMKITEDIRKYAENHGYGNAEEAIQQGMDAMSAAFQAAKKTISGEQHGEVGGEIYLPENYINSLKSQRNV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0144J05.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82014" stop="82238"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSSLVLLNKLRQQPCSMKLSFVSNEKNAYFLVFSLLYLLSFIDTRKHRGCLCQLQMLTDQAEKVPLNLNGIIPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="78825" e_stop="79149"/>
            <exon e_start="79394" e_stop="79521"/>
            <exon e_start="80158" e_stop="80984"/>
            <exon e_start="81118" e_stop="81800"/>
            <exon e_start="81907" e_stop="82656"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.876" acc_prob="0.953" e_score="0.994"/>
          <exon-intron don_prob="0.509" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.999"/>
          <exon-intron don_prob="0.997" acc_prob="0.413" e_score="0.973"/>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="78825" e_stop="79149" e_length="325"/>
          </exon>
          <intron i_serial="1" don_prob="0.876" acc_prob="0.953">
            <gDNA_intron_boundary i_start="79150" i_stop="79393" i_length="244"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79394" e_stop="79521" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.509" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79522" i_stop="80157" i_length="636"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="80158" e_stop="80984" e_length="827"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="80985" i_stop="81117" i_length="133"/>
          </intron>
          <exon e_serial="4" e_score="0.973">
            <gDNA_exon_boundary e_start="81118" e_stop="81800" e_length="683"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.413">
            <gDNA_intron_boundary i_start="81801" i_stop="81906" i_length="106"/>
          </intron>
          <exon e_serial="5" e_score="0.950">
            <gDNA_exon_boundary e_start="81907" e_stop="82656" e_length="750"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78825" stop="79149"/>
              <exon start="79394" stop="79521"/>
              <exon start="80158" stop="80262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78828" stop="79149"/>
              <exon start="79394" stop="79521"/>
              <exon start="80158" stop="80280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78828" stop="79017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78835" stop="79149"/>
              <exon start="79394" stop="79521"/>
              <exon start="80158" stop="80561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78854" stop="79149"/>
              <exon start="79394" stop="79521"/>
              <exon start="80158" stop="80403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78859" stop="79149"/>
              <exon start="79394" stop="79521"/>
              <exon start="80158" stop="80433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78993" stop="79149"/>
              <exon start="79394" stop="79521"/>
              <exon start="80158" stop="80701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79408" stop="79521"/>
              <exon start="80158" stop="80942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79409" stop="79521"/>
              <exon start="80158" stop="80561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80222" stop="80652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80417" stop="80933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80883" stop="80984"/>
              <exon start="81118" stop="81614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81246" stop="81800"/>
              <exon start="81907" stop="82108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585928" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81327" stop="81790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81461" stop="81800"/>
              <exon start="81907" stop="82096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81493" stop="81800"/>
              <exon start="81907" stop="82104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81634" stop="81800"/>
              <exon start="81907" stop="82114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81744" stop="81800"/>
              <exon start="81907" stop="82524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82163" stop="82656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335976" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGACGTTGATTGGAAGATGGCGTCTGTCCAAACTGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATAATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCGGTTACAGGGAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAGAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAG : TGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTG : GACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGGAACTCTGCTGTTGTAAGCTCGATTGAAGAAGAAGTTCACAAGCTTCAATGGGCAACAATGTGGGGTGCAGATACGATTATGGATCTCTCTACTGGTCGTCACATCCACGAGACTCGTGAGTGGATCTTGCGTAATTCTGCTGTACCAGTAGGCACTGTGCCAATTTACCAAGCACTAGAAAAAGTAAACGGGATTGCTGAGAATCTTAGTTGGGAAGTGTTTAGGGAGACCTTAATTGAACAAGCTGAGCAAGGAGTTGATTACTTCACAATCCATGCCGGAGTCCTTCTCAGGTACATCCCACTGACAGCAAAACGGATGACCGGAATTGTTTCTCGTGGAGGCTCAATTCATGCAAAGTGGTGCTTAGCTTATCACAAGGAGAATTTCGCTTATGAACATTGGGATGACATACTTGACATCTGTAATCAGTACGATATATCGTTATCAATTGGTGATGGACTGAGACCTGGTTCAATTTATGATGCAAATGACACCGCTCAGTTTGCTGAGCTCTTGACTCAAGGGGAGCTGACTCGCCGAGCTTGGGAAAAGGATGTACAG : GTTATGAATGAAGGACCTGGACATGTACCAATGCATAAGATTCCCGAGAACATGCAGAAACAGCTAGAGTGGTGTAATGAAGCACCATTTTACACTCTTGGACCATTGACAACTGATATAGCTCCCGGATATGATCATATCACCTCAGCTATCGGTGCAGCCAATATAGGAGCACTCGGGACTGCACTTCTGTGTTACGTCACTCCAAAAGAGCATCTTGGTCTGCCTAATCGCGATGACGTGAAGACAGGTGTAATATCATATAAGATAGCTGCTCATGCAGCTGATCTTGCAAAAGGTCACCCGCTATCTCAAGCCTGGGATGATGCACTTAGCAAGGCAAGATTTGAGTTCAGATGGATGGACCAATTCGCTTTATCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCTATGTGCGGGCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGAAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAGAATTACATCAACTCTTTGAAGAGCCAAAG : GAATGTGTAAAGATCGAAAACTGGCTCACAGATTTCTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAGGTAAGTATCTAGTTTGGTACTGTTAAATAAACTGAGACAACAGCCTTGTTCAATGAAACTCTCCTTTGTTAGTAATGAGAAAAACGCGTATTTTCTTGTGTTCAGTCTTTTATATCTTTTAAGTTTTATTGACACGAGAAAGCACCGGGGGTGTCTGTGTCAGCTTCAAATGCTGACTGATCAGGCTGAGAAAGTCCCTTTGAACCTGAACGGGATAATTCCTGCGTAGGGAGCGTGCAATTTCTTTTTTCTTGCTTGCACAGGGATGGCGATTCTCCAAAATGGTTGAAAATTCAAAATTAATCTGATCCTGCTCTTTGCCAGGACCAGTTTATTCACTGTCTATTCAAGACACCATCTTGTATTGTTTGTTTTTTTGGTGTCCTGTACCGCATTGAGGCCTGACTAAATACAGATTCCCGCACTCTGTACATAACAGAGCTCGAATTCGACACCTTTGATTGGTAGTAAAGGGGTATTTATCACTCCATCACGACCCTTGTTGGTAAGGCATATTCGTGTATGCCTCTGAGACGCGATTGGTTACTTACAATTGACCAATTTTCTCATGGTTAGTCTAGCTTTGGTTGGACTATTGAAACATTCAGTAATATGAATGACTCAATTGCATATATACCTTCATATTT</gDNA_template>
            <first_frame> *  T  L  I  G  R  W  R  L  S  K  L  L  *  H  H  S  Y  A  R  K  G  T  I  I  H  K  *  M  F  Q  E  V  P  S  C  Q  G  L  I  *  Q  G  K  L  R  L  Q  G  E  G  K  R  V  S  I  L  F  Q  A  R  E  Q  H  L  P  L  I  L  P  V  L  I  I  K  R  R  Q  S  Q  S  T  L  L  I  L  M  L  L  I  S  C  P  F  H  H  S  N  N  A  F  R  K  A  P  R  N  T   : V  K  L  C  M  K  K  L  V  M  Y  S  K  S  H  F  D  V  S  I  F  P  G  M  N  H  I  S  T  L  M  I  P  V  V  L  R  V  L  T  R  A  L  :  D  F  P  S  C  A  R  S  G  L  T  G  G  R  S  *  E  D  Q  G  I  L  K  C  S  M  L  S  R  E  S  *  L  R  K  W  C  T  V  L  L  V  R  R  W  I  R  N  L  *  G  Q  K  L  L  G  A  V  Q  S  S  L  Q  T  R  S  T  L  S  W  S  Q  *  *  *  E  E  S  S  *  *  K  S  M  P  T  S  G  T  L  L  L  *  A  R  L  K  K  K  F  T  S  F  N  G  Q  Q  C  G  V  Q  I  R  L  W  I  S  L  L  V  V  T  S  T  R  L  V  S  G  S  C  V  I  L  L  Y  Q  *  A  L  C  Q  F  T  K  H  *  K  K  *  T  G  L  L  R  I  L  V  G  K  C  L  G  R  P  *  L  N  K  L  S  K  E  L  I  T  S  Q  S  M  P  E  S  F  S  G  T  S  H  *  Q  Q  N  G  *  P  E  L  F  L  V  E  A  Q  F  M  Q  S  G  A  *  L  I  T  R  R  I  S  L  M  N  I  G  M  T  Y  L  T  S  V  I  S  T  I  Y  R  Y  Q  L  V  M  D  *  D  L  V  Q  F  M  M  Q  M  T  P  L  S  L  L  S  S  *  L  K  G  S  *  L  A  E  L  G  K  R  M  Y  R :   L  *  M  K  D  L  D  M  Y  Q  C  I  R  F  P  R  T  C  R  N  S  *  S  G  V  M  K  H  H  F  T  L  L  D  H  *  Q  L  I  *  L  P  D  M  I  I  S  P  Q  L  S  V  Q  P  I  *  E  H  S  G  L  H  F  C  V  T  S  L  Q  K  S  I  L  V  C  L  I  A  M  T  *  R  Q  V  *  Y  H  I  R  *  L  L  M  Q  L  I  L  Q  K  V  T  R  Y  L  K  P  G  M  M  H  L  A  R  Q  D  L  S  S  D  G  W  T  N  S  L  Y  H  W  T  P  L  L  Q  C  P  F  T  T  K  L  Y  Q  P  M  G  L  K  W  H  I  S  A  L  C  A  G  L  S  F  A  P  *  K  *  P  K  I  *  E  S  M  L  K  I  M  V  M  E  M  Q  R  K  P  F  S  R  A  W  M  L  *  V  Q  R  F  K  L  Q  K  K  P  L  V  G  N  N  T  V  R  L  A  V  R  S  T  C  Q  R  I  T  S  T  L  *  R  A  K   : G  M  C  K  D  R  K  L  A  H  R  F  L  K  *  S  Q  L  H  R  P  V  K  E  A  V  V  G  A  S  L  S  S  V  R  *  V  S  S  L  V  L  L  N  K  L  R  Q  Q  P  C  S  M  K  L  S  F  V  S  N  E  K  N  A  Y  F  L  V  F  S  L  L  Y  L  L  S  F  I  D  T  R  K  H  R  G  C  L  C  Q  L  Q  M  L  T  D  Q  A  E  K  V  P  L  N  L  N  G  I  I  P  A  *  G  A  C  N  F  F  F  L  A  C  T  G  M  A  I  L  Q  N  G  *  K  F  K  I  N  L  I  L  L  F  A  R  T  S  L  F  T  V  Y  S  R  H  H  L  V  L  F  V  F  L  V  S  C  T  A  L  R  P  D  *  I  Q  I  P  A  L  C  T  *  Q  S  S  N  S  T  P  L  I  G  S  K  G  V  F  I  T  P  S  R  P  L  L  V  R  H  I  R  V  C  L  *  D  A  I  G  Y  L  Q  L  T  N  F  L  M  V  S  L  A  L  V  G  L  L  K  H  S  V  I  *  M  T  Q  L  H  I  Y  L  H  I  </first_frame>
            <second_frame>  R  R  *  L  E  D  G  V  C  P  N  C  F  D  I  T  P  M  Q  E  R  E  Q  *  S  T  S  K  C  S  K  K  F  L  L  A  R  V  *  F  D  R  A  S  C  G  Y  R  E  K  G  N  A  F  Q  F  F  F  K  P  E  S  N  T  Y  L  *  S  S  Q  Y  *  *  *  R  E  D  K  A  K  A  H  C  *  S  *  C  S  *  F  P  A  P  S  T  I  R  T  M  L  S  E  K  L  Q  G  I  Q  :  *  S  Y  A  *  R  N  W  S  C  T  Q  S  P  I  S  T  Y  P  S  F  R  G  *  T  T  F  R  H  L  *  Y  Q  W  S  S  G  C  *  P  A  R  W :   T  S  Q  A  A  H  G  V  D  *  Q  E  G  E  V  R  R  T  K  V  Y  S  N  V  L  C  *  A  G  N  H  N  *  G  N  G  V  L  C  C  S  *  E  D  G  S  G  I  C  E  V  R  S  C  S  G  P  C  N  H  P  F  K  Q  E  A  P  *  V  G  A  N  D  S  R  K  K  V  L  S  E  S  Q  C  Q  H  R  E  L  C  C  C  K  L  D  *  R  R  S  S  Q  A  S  M  G  N  N  V  G  C  R  Y  D  Y  G  S  L  Y  W  S  S  H  P  R  D  S  *  V  D  L  A  *  F  C  C  T  S  R  H  C  A  N  L  P  S  T  R  K  S  K  R  D  C  *  E  S  *  L  G  S  V  *  G  D  L  N  *  T  S  *  A  R  S  *  L  L  H  N  P  C  R  S  P  S  Q  V  H  P  T  D  S  K  T  D  D  R  N  C  F  S  W  R  L  N  S  C  K  V  V  L  S  L  S  Q  G  E  F  R  L  *  T  L  G  *  H  T  *  H  L  *  S  V  R  Y  I  V  I  N  W  *  W  T  E  T  W  F  N  L  *  C  K  *  H  R  S  V  C  *  A  L  D  S  R  G  A  D  S  P  S  L  G  K  G  C  T   : G  Y  E  *  R  T  W  T  C  T  N  A  *  D  S  R  E  H  A  E  T  A  R  V  V  *  *  S  T  I  L  H  S  W  T  I  D  N  *  Y  S  S  R  I  *  S  Y  H  L  S  Y  R  C  S  Q  Y  R  S  T  R  D  C  T  S  V  L  R  H  S  K  R  A  S  W  S  A  *  S  R  *  R  E  D  R  C  N  I  I  *  D  S  C  S  C  S  *  S  C  K  R  S  P  A  I  S  S  L  G  *  C  T  *  Q  G  K  I  *  V  Q  M  D  G  P  I  R  F  I  I  G  P  R  Y  C  N  V  L  S  R  R  N  F  T  S  R  W  G  *  S  G  T  F  L  L  Y  V  R  A  *  V  L  L  H  E  N  N  R  R  Y  K  K  V  C  *  K  S  W  L  W  K  C  R  G  S  H  S  A  G  H  G  C  Y  E  C  S  V  S  S  C  K  K  N  H  *  W  G  T  T  R  *  G  W  R  *  D  L  L  A  R  E  L  H  Q  L  F  E  E  P  K  :  E  C  V  K  I  E  N  W  L  T  D  F  *  S  D  H  N  S  I  G  Q  S  R  R  R  *  *  E  P  H  Y  Q  V  L  G  K  Y  L  V  W  Y  C  *  I  N  *  D  N  S  L  V  Q  *  N  S  P  L  L  V  M  R  K  T  R  I  F  L  C  S  V  F  Y  I  F  *  V  L  L  T  R  E  S  T  G  G  V  C  V  S  F  K  C  *  L  I  R  L  R  K  S  L  *  T  *  T  G  *  F  L  R  R  E  R  A  I  S  F  F  L  L  A  Q  G  W  R  F  S  K  M  V  E  N  S  K  L  I  *  S  C  S  L  P  G  P  V  Y  S  L  S  I  Q  D  T  I  L  Y  C  L  F  F  W  C  P  V  P  H  *  G  L  T  K  Y  R  F  P  H  S  V  H  N  R  A  R  I  R  H  L  *  L  V  V  K  G  Y  L  S  L  H  H  D  P  C  W  *  G  I  F  V  Y  A  S  E  T  R  L  V  T  Y  N  *  P  I  F  S  W  L  V  *  L  W  L  D  Y  *  N  I  Q  *  Y  E  *  L  N  C  I  Y  T  F  I  F </second_frame>
            <third_frame>   D  V  D  W  K  M  A  S  V  Q  T  A  L  T  S  L  L  C  K  K  G  N  N  N  P  Q  V  N  V  P  R  S  S  F  L  P  G  F  D  L  T  G  Q  V  A  V  T  G  R  R  E  T  R  F  N  S  F  S  S  P  R  A  T  L  T  F  D  P  P  S  T  D  N  K  E  K  T  K  P  K  H  T  V  D  P  N  A  P  D  F  L  P  L  P  P  F  E  Q  C  F  P  K  S  S  K  E  Y  S :   E  V  M  H  E  E  T  G  H  V  L  K  V  P  F  R  R  I  H  L  S  G  D  E  P  H  F  D  T  Y  D  T  S  G  P  Q  G  V  N  P  R  V   : G  L  P  K  L  R  T  E  W  I  N  R  R  E  K  L  G  G  P  R  Y  T  Q  M  F  Y  A  K  Q  G  I  I  T  E  E  M  V  Y  C  A  A  R  E  K  M  D  P  E  F  V  R  S  E  V  A  R  G  R  A  I  I  P  S  N  K  K  H  P  E  L  E  P  M  I  V  G  R  K  F  L  V  K  V  N  A  N  I  G  N  S  A  V  V  S  S  I  E  E  E  V  H  K  L  Q  W  A  T  M  W  G  A  D  T  I  M  D  L  S  T  G  R  H  I  H  E  T  R  E  W  I  L  R  N  S  A  V  P  V  G  T  V  P  I  Y  Q  A  L  E  K  V  N  G  I  A  E  N  L  S  W  E  V  F  R  E  T  L  I  E  Q  A  E  Q  G  V  D  Y  F  T  I  H  A  G  V  L  L  R  Y  I  P  L  T  A  K  R  M  T  G  I  V  S  R  G  G  S  I  H  A  K  W  C  L  A  Y  H  K  E  N  F  A  Y  E  H  W  D  D  I  L  D  I  C  N  Q  Y  D  I  S  L  S  I  G  D  G  L  R  P  G  S  I  Y  D  A  N  D  T  A  Q  F  A  E  L  L  T  Q  G  E  L  T  R  R  A  W  E  K  D  V  Q  :  V  M  N  E  G  P  G  H  V  P  M  H  K  I  P  E  N  M  Q  K  Q  L  E  W  C  N  E  A  P  F  Y  T  L  G  P  L  T  T  D  I  A  P  G  Y  D  H  I  T  S  A  I  G  A  A  N  I  G  A  L  G  T  A  L  L  C  Y  V  T  P  K  E  H  L  G  L  P  N  R  D  D  V  K  T  G  V  I  S  Y  K  I  A  A  H  A  A  D  L  A  K  G  H  P  L  S  Q  A  W  D  D  A  L  S  K  A  R  F  E  F  R  W  M  D  Q  F  A  L  S  L  D  P  V  T  A  M  S  F  H  D  E  T  L  P  A  D  G  A  K  V  A  H  F  C  S  M  C  G  P  K  F  C  S  M  K  I  T  E  D  I  R  K  Y  A  E  N  H  G  Y  G  N  A  E  E  A  I  Q  Q  G  M  D  A  M  S  A  A  F  Q  A  A  K  K  T  I  S  G  E  Q  H  G  E  V  G  G  E  I  Y  L  P  E  N  Y  I  N  S  L  K  S  Q  R :   N  V  *  R  S  K  T  G  S  Q  I  S  E  V  I  T  T  P  S  A  S  Q  G  G  G  S  R  S  L  I  I  K  C  *  V  S  I  *  F  G  T  V  K  *  T  E  T  T  A  L  F  N  E  T  L  L  C  *  *  *  E  K  R  V  F  S  C  V  Q  S  F  I  S  F  K  F  Y  *  H  E  K  A  P  G  V  S  V  S  A  S  N  A  D  *  S  G  *  E  S  P  F  E  P  E  R  D  N  S  C  V  G  S  V  Q  F  L  F  S  C  L  H  R  D  G  D  S  P  K  W  L  K  I  Q  N  *  S  D  P  A  L  C  Q  D  Q  F  I  H  C  L  F  K  T  P  S  C  I  V  C  F  F  G  V  L  Y  R  I  E  A  *  L  N  T  D  S  R  T  L  Y  I  T  E  L  E  F  D  T  F  D  W  *  *  R  G  I  Y  H  S  I  T  T  L  V  G  K  A  Y  S  C  M  P  L  R  R  D  W  L  L  T  I  D  Q  F  S  H  G  *  S  S  F  G  W  T  I  E  T  F  S  N  M  N  D  S  I  A  Y  I  P  S  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0144J05.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78827" stop="79149"/>
                    <exon start="79394" stop="79521"/>
                    <exon start="80158" stop="80984"/>
                    <exon start="81118" stop="81800"/>
                    <exon start="81907" stop="81916"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1968</number_coding_nucleotides>
                  <number_encoded_amino_acids>656</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DVDWKMASVQTALTSLLCKKGNNNPQVNVPRSSFLPGFDLTGQVAVTGRRETRFNSFSSPRATLTFDPPSTDNKEKTKPKHTVDPNAPDFLPLPPFEQCFPKSSKEYSEVMHEETGHVLKVPFRRIHLSGDEPHFDTYDTSGPQGVNPRVGLPKLRTEWINRREKLGGPRYTQMFYAKQGIITEEMVYCAAREKMDPEFVRSEVARGRAIIPSNKKHPELEPMIVGRKFLVKVNANIGNSAVVSSIEEEVHKLQWATMWGADTIMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVNGIAENLSWEVFRETLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDDILDICNQYDISLSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWEKDVQVMNEGPGHVPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKTGVISYKIAAHAADLAKGHPLSQAWDDALSKARFEFRWMDQFALSLDPVTAMSFHDETLPADGAKVAHFCSMCGPKFCSMKITEDIRKYAENHGYGNAEEAIQQGMDAMSAAFQAAKKTISGEQHGEVGGEIYLPENYINSLKSQRNV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0144J05.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82014" stop="82238"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSSLVLLNKLRQQPCSMKLSFVSNEKNAYFLVFSLLYLLSFIDTRKHRGCLCQLQMLTDQAEKVPLNLNGIIPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="77269" e_stop="77302"/>
            <exon e_start="78828" e_stop="79149"/>
            <exon e_start="79394" e_stop="79521"/>
            <exon e_start="80158" e_stop="80984"/>
            <exon e_start="81118" e_stop="81800"/>
            <exon e_start="81907" e_stop="82009"/>
            <exon e_start="82173" e_stop="82577"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.876" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.509" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.999"/>
          <exon-intron don_prob="0.997" acc_prob="0.413" e_score="0.960"/>
          <exon-intron don_prob="0.992" acc_prob="0.479" e_score="1.000"/>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77269" e_stop="77302" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.977">
            <gDNA_intron_boundary i_start="77303" i_stop="78827" i_length="1525"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78828" e_stop="79149" e_length="322"/>
          </exon>
          <intron i_serial="2" don_prob="0.876" acc_prob="0.953">
            <gDNA_intron_boundary i_start="79150" i_stop="79393" i_length="244"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79394" e_stop="79521" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.509" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79522" i_stop="80157" i_length="636"/>
          </intron>
          <exon e_serial="4" e_score="0.999">
            <gDNA_exon_boundary e_start="80158" e_stop="80984" e_length="827"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="80985" i_stop="81117" i_length="133"/>
          </intron>
          <exon e_serial="5" e_score="0.960">
            <gDNA_exon_boundary e_start="81118" e_stop="81800" e_length="683"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.413">
            <gDNA_intron_boundary i_start="81801" i_stop="81906" i_length="106"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="81907" e_stop="82009" e_length="103"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.479">
            <gDNA_intron_boundary i_start="82010" i_stop="82172" i_length="163"/>
          </intron>
          <exon e_serial="7" e_score="0.906">
            <gDNA_exon_boundary e_start="82173" e_stop="82577" e_length="405"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77269" stop="77302"/>
              <exon start="78828" stop="79149"/>
              <exon start="79394" stop="79521"/>
              <exon start="80158" stop="80233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77273" stop="77302"/>
              <exon start="78828" stop="79149"/>
              <exon start="79394" stop="79521"/>
              <exon start="80158" stop="80186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78828" stop="79149"/>
              <exon start="79394" stop="79521"/>
              <exon start="80158" stop="80280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78828" stop="79017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78835" stop="79149"/>
              <exon start="79394" stop="79521"/>
              <exon start="80158" stop="80561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78854" stop="79149"/>
              <exon start="79394" stop="79521"/>
              <exon start="80158" stop="80403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78859" stop="79149"/>
              <exon start="79394" stop="79521"/>
              <exon start="80158" stop="80433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78993" stop="79149"/>
              <exon start="79394" stop="79521"/>
              <exon start="80158" stop="80701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79408" stop="79521"/>
              <exon start="80158" stop="80942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79409" stop="79521"/>
              <exon start="80158" stop="80561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80222" stop="80652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80417" stop="80933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80883" stop="80984"/>
              <exon start="81118" stop="81614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81327" stop="81790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81358" stop="81800"/>
              <exon start="81907" stop="82009"/>
              <exon start="82173" stop="82442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81359" stop="81800"/>
              <exon start="81907" stop="82009"/>
              <exon start="82173" stop="82354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81664" stop="81800"/>
              <exon start="81907" stop="82009"/>
              <exon start="82173" stop="82577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599583" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCATCATTTACAGCTCTAATTCATTTGCTTCAG : ACGTTGATTGGAAGATGGCGTCTGTCCAAACTGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATAATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCGGTTACAGGGAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAGAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAG : TGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTG : GACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGGAACTCTGCTGTTGTAAGCTCGATTGAAGAAGAAGTTCACAAGCTTCAATGGGCAACAATGTGGGGTGCAGATACGATTATGGATCTCTCTACTGGTCGTCACATCCACGAGACTCGTGAGTGGATCTTGCGTAATTCTGCTGTACCAGTAGGCACTGTGCCAATTTACCAAGCACTAGAAAAAGTAAACGGGATTGCTGAGAATCTTAGTTGGGAAGTGTTTAGGGAGACCTTAATTGAACAAGCTGAGCAAGGAGTTGATTACTTCACAATCCATGCCGGAGTCCTTCTCAGGTACATCCCACTGACAGCAAAACGGATGACCGGAATTGTTTCTCGTGGAGGCTCAATTCATGCAAAGTGGTGCTTAGCTTATCACAAGGAGAATTTCGCTTATGAACATTGGGATGACATACTTGACATCTGTAATCAGTACGATATATCGTTATCAATTGGTGATGGACTGAGACCTGGTTCAATTTATGATGCAAATGACACCGCTCAGTTTGCTGAGCTCTTGACTCAAGGGGAGCTGACTCGCCGAGCTTGGGAAAAGGATGTACAG : GTTATGAATGAAGGACCTGGACATGTACCAATGCATAAGATTCCCGAGAACATGCAGAAACAGCTAGAGTGGTGTAATGAAGCACCATTTTACACTCTTGGACCATTGACAACTGATATAGCTCCCGGATATGATCATATCACCTCAGCTATCGGTGCAGCCAATATAGGAGCACTCGGGACTGCACTTCTGTGTTACGTCACTCCAAAAGAGCATCTTGGTCTGCCTAATCGCGATGACGTGAAGACAGGTGTAATATCATATAAGATAGCTGCTCATGCAGCTGATCTTGCAAAAGGTCACCCGCTATCTCAAGCCTGGGATGATGCACTTAGCAAGGCAAGATTTGAGTTCAGATGGATGGACCAATTCGCTTTATCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCTATGTGCGGGCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGAAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAGAATTACATCAACTCTTTGAAGAGCCAAAG : GAATGTGTAAAGATCGAAAACTGGCTCACAGATTTCTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAG : CTTCAAATGCTGACTGATCAGGCTGAGAAAGTCCCTTTGAACCTGAACGGGATAATTCCTGCGTAGGGAGCGTGCAATTTCTTTTTTCTTGCTTGCACAGGGATGGCGATTCTCCAAAATGGTTGAAAATTCAAAATTAATCTGATCCTGCTCTTTGCCAGGACCAGTTTATTCACTGTCTATTCAAGACACCATCTTGTATTGTTTGTTTTTTTGGTGTCCTGTACCGCATTGAGGCCTGACTAAATACAGATTCCCGCACTCTGTACATAACAGAGCTCGAATTCGACACCTTTGATTGGTAGTAAAGGGGTATTTATCACTCCATCACGACCCTTGTTGGTAAGGCATATTCGTGTATGCCTCTGAGACGCGATTGGTTACTTACAATTGACCAATTTTCTC</gDNA_template>
            <first_frame> L  I  I  Y  S  S  N  S  F  A  S   : D  V  D  W  K  M  A  S  V  Q  T  A  L  T  S  L  L  C  K  K  G  N  N  N  P  Q  V  N  V  P  R  S  S  F  L  P  G  F  D  L  T  G  Q  V  A  V  T  G  R  R  E  T  R  F  N  S  F  S  S  P  R  A  T  L  T  F  D  P  P  S  T  D  N  K  E  K  T  K  P  K  H  T  V  D  P  N  A  P  D  F  L  P  L  P  P  F  E  Q  C  F  P  K  S  S  K  E  Y  S :   E  V  M  H  E  E  T  G  H  V  L  K  V  P  F  R  R  I  H  L  S  G  D  E  P  H  F  D  T  Y  D  T  S  G  P  Q  G  V  N  P  R  V   : G  L  P  K  L  R  T  E  W  I  N  R  R  E  K  L  G  G  P  R  Y  T  Q  M  F  Y  A  K  Q  G  I  I  T  E  E  M  V  Y  C  A  A  R  E  K  M  D  P  E  F  V  R  S  E  V  A  R  G  R  A  I  I  P  S  N  K  K  H  P  E  L  E  P  M  I  V  G  R  K  F  L  V  K  V  N  A  N  I  G  N  S  A  V  V  S  S  I  E  E  E  V  H  K  L  Q  W  A  T  M  W  G  A  D  T  I  M  D  L  S  T  G  R  H  I  H  E  T  R  E  W  I  L  R  N  S  A  V  P  V  G  T  V  P  I  Y  Q  A  L  E  K  V  N  G  I  A  E  N  L  S  W  E  V  F  R  E  T  L  I  E  Q  A  E  Q  G  V  D  Y  F  T  I  H  A  G  V  L  L  R  Y  I  P  L  T  A  K  R  M  T  G  I  V  S  R  G  G  S  I  H  A  K  W  C  L  A  Y  H  K  E  N  F  A  Y  E  H  W  D  D  I  L  D  I  C  N  Q  Y  D  I  S  L  S  I  G  D  G  L  R  P  G  S  I  Y  D  A  N  D  T  A  Q  F  A  E  L  L  T  Q  G  E  L  T  R  R  A  W  E  K  D  V  Q  :  V  M  N  E  G  P  G  H  V  P  M  H  K  I  P  E  N  M  Q  K  Q  L  E  W  C  N  E  A  P  F  Y  T  L  G  P  L  T  T  D  I  A  P  G  Y  D  H  I  T  S  A  I  G  A  A  N  I  G  A  L  G  T  A  L  L  C  Y  V  T  P  K  E  H  L  G  L  P  N  R  D  D  V  K  T  G  V  I  S  Y  K  I  A  A  H  A  A  D  L  A  K  G  H  P  L  S  Q  A  W  D  D  A  L  S  K  A  R  F  E  F  R  W  M  D  Q  F  A  L  S  L  D  P  V  T  A  M  S  F  H  D  E  T  L  P  A  D  G  A  K  V  A  H  F  C  S  M  C  G  P  K  F  C  S  M  K  I  T  E  D  I  R  K  Y  A  E  N  H  G  Y  G  N  A  E  E  A  I  Q  Q  G  M  D  A  M  S  A  A  F  Q  A  A  K  K  T  I  S  G  E  Q  H  G  E  V  G  G  E  I  Y  L  P  E  N  Y  I  N  S  L  K  S  Q  R :   N  V  *  R  S  K  T  G  S  Q  I  S  E  V  I  T  T  P  S  A  S  Q  G  G  G  S  R  S  L  I  I  K  C  *  :  L  Q  M  L  T  D  Q  A  E  K  V  P  L  N  L  N  G  I  I  P  A  *  G  A  C  N  F  F  F  L  A  C  T  G  M  A  I  L  Q  N  G  *  K  F  K  I  N  L  I  L  L  F  A  R  T  S  L  F  T  V  Y  S  R  H  H  L  V  L  F  V  F  L  V  S  C  T  A  L  R  P  D  *  I  Q  I  P  A  L  C  T  *  Q  S  S  N  S  T  P  L  I  G  S  K  G  V  F  I  T  P  S  R  P  L  L  V  R  H  I  R  V  C  L  *  D  A  I  G  Y  L  Q  L  T  N  F  L </first_frame>
            <second_frame>  S  S  F  T  A  L  I  H  L  L  Q  :  T  L  I  G  R  W  R  L  S  K  L  L  *  H  H  S  Y  A  R  K  G  T  I  I  H  K  *  M  F  Q  E  V  P  S  C  Q  G  L  I  *  Q  G  K  L  R  L  Q  G  E  G  K  R  V  S  I  L  F  Q  A  R  E  Q  H  L  P  L  I  L  P  V  L  I  I  K  R  R  Q  S  Q  S  T  L  L  I  L  M  L  L  I  S  C  P  F  H  H  S  N  N  A  F  R  K  A  P  R  N  T   : V  K  L  C  M  K  K  L  V  M  Y  S  K  S  H  F  D  V  S  I  F  P  G  M  N  H  I  S  T  L  M  I  P  V  V  L  R  V  L  T  R  A  L  :  D  F  P  S  C  A  R  S  G  L  T  G  G  R  S  *  E  D  Q  G  I  L  K  C  S  M  L  S  R  E  S  *  L  R  K  W  C  T  V  L  L  V  R  R  W  I  R  N  L  *  G  Q  K  L  L  G  A  V  Q  S  S  L  Q  T  R  S  T  L  S  W  S  Q  *  *  *  E  E  S  S  *  *  K  S  M  P  T  S  G  T  L  L  L  *  A  R  L  K  K  K  F  T  S  F  N  G  Q  Q  C  G  V  Q  I  R  L  W  I  S  L  L  V  V  T  S  T  R  L  V  S  G  S  C  V  I  L  L  Y  Q  *  A  L  C  Q  F  T  K  H  *  K  K  *  T  G  L  L  R  I  L  V  G  K  C  L  G  R  P  *  L  N  K  L  S  K  E  L  I  T  S  Q  S  M  P  E  S  F  S  G  T  S  H  *  Q  Q  N  G  *  P  E  L  F  L  V  E  A  Q  F  M  Q  S  G  A  *  L  I  T  R  R  I  S  L  M  N  I  G  M  T  Y  L  T  S  V  I  S  T  I  Y  R  Y  Q  L  V  M  D  *  D  L  V  Q  F  M  M  Q  M  T  P  L  S  L  L  S  S  *  L  K  G  S  *  L  A  E  L  G  K  R  M  Y  R :   L  *  M  K  D  L  D  M  Y  Q  C  I  R  F  P  R  T  C  R  N  S  *  S  G  V  M  K  H  H  F  T  L  L  D  H  *  Q  L  I  *  L  P  D  M  I  I  S  P  Q  L  S  V  Q  P  I  *  E  H  S  G  L  H  F  C  V  T  S  L  Q  K  S  I  L  V  C  L  I  A  M  T  *  R  Q  V  *  Y  H  I  R  *  L  L  M  Q  L  I  L  Q  K  V  T  R  Y  L  K  P  G  M  M  H  L  A  R  Q  D  L  S  S  D  G  W  T  N  S  L  Y  H  W  T  P  L  L  Q  C  P  F  T  T  K  L  Y  Q  P  M  G  L  K  W  H  I  S  A  L  C  A  G  L  S  F  A  P  *  K  *  P  K  I  *  E  S  M  L  K  I  M  V  M  E  M  Q  R  K  P  F  S  R  A  W  M  L  *  V  Q  R  F  K  L  Q  K  K  P  L  V  G  N  N  T  V  R  L  A  V  R  S  T  C  Q  R  I  T  S  T  L  *  R  A  K   : G  M  C  K  D  R  K  L  A  H  R  F  L  K  *  S  Q  L  H  R  P  V  K  E  A  V  V  G  A  S  L  S  S  V  S :   F  K  C  *  L  I  R  L  R  K  S  L  *  T  *  T  G  *  F  L  R  R  E  R  A  I  S  F  F  L  L  A  Q  G  W  R  F  S  K  M  V  E  N  S  K  L  I  *  S  C  S  L  P  G  P  V  Y  S  L  S  I  Q  D  T  I  L  Y  C  L  F  F  W  C  P  V  P  H  *  G  L  T  K  Y  R  F  P  H  S  V  H  N  R  A  R  I  R  H  L  *  L  V  V  K  G  Y  L  S  L  H  H  D  P  C  W  *  G  I  F  V  Y  A  S  E  T  R  L  V  T  Y  N  *  P  I  F   </second_frame>
            <third_frame>   H  H  L  Q  L  *  F  I  C  F  R :   R  *  L  E  D  G  V  C  P  N  C  F  D  I  T  P  M  Q  E  R  E  Q  *  S  T  S  K  C  S  K  K  F  L  L  A  R  V  *  F  D  R  A  S  C  G  Y  R  E  K  G  N  A  F  Q  F  F  F  K  P  E  S  N  T  Y  L  *  S  S  Q  Y  *  *  *  R  E  D  K  A  K  A  H  C  *  S  *  C  S  *  F  P  A  P  S  T  I  R  T  M  L  S  E  K  L  Q  G  I  Q  :  *  S  Y  A  *  R  N  W  S  C  T  Q  S  P  I  S  T  Y  P  S  F  R  G  *  T  T  F  R  H  L  *  Y  Q  W  S  S  G  C  *  P  A  R  W :   T  S  Q  A  A  H  G  V  D  *  Q  E  G  E  V  R  R  T  K  V  Y  S  N  V  L  C  *  A  G  N  H  N  *  G  N  G  V  L  C  C  S  *  E  D  G  S  G  I  C  E  V  R  S  C  S  G  P  C  N  H  P  F  K  Q  E  A  P  *  V  G  A  N  D  S  R  K  K  V  L  S  E  S  Q  C  Q  H  R  E  L  C  C  C  K  L  D  *  R  R  S  S  Q  A  S  M  G  N  N  V  G  C  R  Y  D  Y  G  S  L  Y  W  S  S  H  P  R  D  S  *  V  D  L  A  *  F  C  C  T  S  R  H  C  A  N  L  P  S  T  R  K  S  K  R  D  C  *  E  S  *  L  G  S  V  *  G  D  L  N  *  T  S  *  A  R  S  *  L  L  H  N  P  C  R  S  P  S  Q  V  H  P  T  D  S  K  T  D  D  R  N  C  F  S  W  R  L  N  S  C  K  V  V  L  S  L  S  Q  G  E  F  R  L  *  T  L  G  *  H  T  *  H  L  *  S  V  R  Y  I  V  I  N  W  *  W  T  E  T  W  F  N  L  *  C  K  *  H  R  S  V  C  *  A  L  D  S  R  G  A  D  S  P  S  L  G  K  G  C  T   : G  Y  E  *  R  T  W  T  C  T  N  A  *  D  S  R  E  H  A  E  T  A  R  V  V  *  *  S  T  I  L  H  S  W  T  I  D  N  *  Y  S  S  R  I  *  S  Y  H  L  S  Y  R  C  S  Q  Y  R  S  T  R  D  C  T  S  V  L  R  H  S  K  R  A  S  W  S  A  *  S  R  *  R  E  D  R  C  N  I  I  *  D  S  C  S  C  S  *  S  C  K  R  S  P  A  I  S  S  L  G  *  C  T  *  Q  G  K  I  *  V  Q  M  D  G  P  I  R  F  I  I  G  P  R  Y  C  N  V  L  S  R  R  N  F  T  S  R  W  G  *  S  G  T  F  L  L  Y  V  R  A  *  V  L  L  H  E  N  N  R  R  Y  K  K  V  C  *  K  S  W  L  W  K  C  R  G  S  H  S  A  G  H  G  C  Y  E  C  S  V  S  S  C  K  K  N  H  *  W  G  T  T  R  *  G  W  R  *  D  L  L  A  R  E  L  H  Q  L  F  E  E  P  K  :  E  C  V  K  I  E  N  W  L  T  D  F  *  S  D  H  N  S  I  G  Q  S  R  R  R  *  *  E  P  H  Y  Q  V  L   : A  S  N  A  D  *  S  G  *  E  S  P  F  E  P  E  R  D  N  S  C  V  G  S  V  Q  F  L  F  S  C  L  H  R  D  G  D  S  P  K  W  L  K  I  Q  N  *  S  D  P  A  L  C  Q  D  Q  F  I  H  C  L  F  K  T  P  S  C  I  V  C  F  F  G  V  L  Y  R  I  E  A  *  L  N  T  D  S  R  T  L  Y  I  T  E  L  E  F  D  T  F  D  W  *  *  R  G  I  Y  H  S  I  T  T  L  V  G  K  A  Y  S  C  M  P  L  R  R  D  W  L  L  T  I  D  Q  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0144J05.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77269" stop="77302"/>
                    <exon start="78828" stop="79149"/>
                    <exon start="79394" stop="79521"/>
                    <exon start="80158" stop="80984"/>
                    <exon start="81118" stop="81800"/>
                    <exon start="81907" stop="81916"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2001</number_coding_nucleotides>
                  <number_encoded_amino_acids>667</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIIYSSNSFASDVDWKMASVQTALTSLLCKKGNNNPQVNVPRSSFLPGFDLTGQVAVTGRRETRFNSFSSPRATLTFDPPSTDNKEKTKPKHTVDPNAPDFLPLPPFEQCFPKSSKEYSEVMHEETGHVLKVPFRRIHLSGDEPHFDTYDTSGPQGVNPRVGLPKLRTEWINRREKLGGPRYTQMFYAKQGIITEEMVYCAAREKMDPEFVRSEVARGRAIIPSNKKHPELEPMIVGRKFLVKVNANIGNSAVVSSIEEEVHKLQWATMWGADTIMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVNGIAENLSWEVFRETLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDDILDICNQYDISLSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWEKDVQVMNEGPGHVPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKTGVISYKIAAHAADLAKGHPLSQAWDDALSKARFEFRWMDQFALSLDPVTAMSFHDETLPADGAKVAHFCSMCGPKFCSMKITEDIRKYAENHGYGNAEEAIQQGMDAMSAAFQAAKKTISGEQHGEVGGEIYLPENYINSLKSQRNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="81842" e_stop="82656"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="81842" e_stop="82656" e_length="815"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81842" stop="82495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82163" stop="82656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335976" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGCAGAGTCTTTGTGTATTCCGATTAAAGCTCCTTTCACTTACCTTAAAGAATACAATTTCAGGAATGTGTAAAGATCGAAAACTGGCTCACAGATTTCTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAGGTAAGTATCTAGTTTGGTACTGTTAAATAAACTGAGACAACAGCCTTGTTCAATGAAACTCTCCTTTGTTAGTAATGAGAAAAACGCGTATTTTCTTGTGTTCAGTCTTTTATATCTTTTAAGTTTTATTGACACGAGAAAGCACCGGGGGTGTCTGTGTCAGCTTCAAATGCTGACTGATCAGGCTGAGAAAGTCCCTTTGAACCTGAACGGGATAATTCCTGCGTAGGGAGCGTGCAATTTCTTTTTTCTTGCTTGCACAGGGATGGCGATTCTCCAAAATGGTTGAAAATTCAAAATTAATCTGATCCTGCTCTTTGCCAGGACCAGTTTATTCACTGTCTATTCAAGACACCATCTTGTATTGTTTGTTTTTTTGGTGTCCTGTACCGCATTGAGGCCTGACTAAATACAGATTCCCGCACTCTGTACATAACAGAGCTCGAATTCGACACCTTTGATTGGTAGTAAAGGGGTATTTATCACTCCATCACGACCCTTGTTGGTAAGGCATATTCGTGTATGCCTCTGAGACGCGATTGGTTACTTACAATTGACCAATTTTCTCATGGTTAGTCTAGCTTTGGTTGGACTATTGAAACATTCAGTAATATGAATGACTCAATTGCATATATACCTTCATATTT</gDNA_template>
            <first_frame> N  A  E  S  L  C  I  P  I  K  A  P  F  T  Y  L  K  E  Y  N  F  R  N  V  *  R  S  K  T  G  S  Q  I  S  E  V  I  T  T  P  S  A  S  Q  G  G  G  S  R  S  L  I  I  K  C  *  V  S  I  *  F  G  T  V  K  *  T  E  T  T  A  L  F  N  E  T  L  L  C  *  *  *  E  K  R  V  F  S  C  V  Q  S  F  I  S  F  K  F  Y  *  H  E  K  A  P  G  V  S  V  S  A  S  N  A  D  *  S  G  *  E  S  P  F  E  P  E  R  D  N  S  C  V  G  S  V  Q  F  L  F  S  C  L  H  R  D  G  D  S  P  K  W  L  K  I  Q  N  *  S  D  P  A  L  C  Q  D  Q  F  I  H  C  L  F  K  T  P  S  C  I  V  C  F  F  G  V  L  Y  R  I  E  A  *  L  N  T  D  S  R  T  L  Y  I  T  E  L  E  F  D  T  F  D  W  *  *  R  G  I  Y  H  S  I  T  T  L  V  G  K  A  Y  S  C  M  P  L  R  R  D  W  L  L  T  I  D  Q  F  S  H  G  *  S  S  F  G  W  T  I  E  T  F  S  N  M  N  D  S  I  A  Y  I  P  S  Y   </first_frame>
            <second_frame>  M  Q  S  L  C  V  F  R  L  K  L  L  S  L  T  L  K  N  T  I  S  G  M  C  K  D  R  K  L  A  H  R  F  L  K  *  S  Q  L  H  R  P  V  K  E  A  V  V  G  A  S  L  S  S  V  R  *  V  S  S  L  V  L  L  N  K  L  R  Q  Q  P  C  S  M  K  L  S  F  V  S  N  E  K  N  A  Y  F  L  V  F  S  L  L  Y  L  L  S  F  I  D  T  R  K  H  R  G  C  L  C  Q  L  Q  M  L  T  D  Q  A  E  K  V  P  L  N  L  N  G  I  I  P  A  *  G  A  C  N  F  F  F  L  A  C  T  G  M  A  I  L  Q  N  G  *  K  F  K  I  N  L  I  L  L  F  A  R  T  S  L  F  T  V  Y  S  R  H  H  L  V  L  F  V  F  L  V  S  C  T  A  L  R  P  D  *  I  Q  I  P  A  L  C  T  *  Q  S  S  N  S  T  P  L  I  G  S  K  G  V  F  I  T  P  S  R  P  L  L  V  R  H  I  R  V  C  L  *  D  A  I  G  Y  L  Q  L  T  N  F  L  M  V  S  L  A  L  V  G  L  L  K  H  S  V  I  *  M  T  Q  L  H  I  Y  L  H  I  </second_frame>
            <third_frame>   C  R  V  F  V  Y  S  D  *  S  S  F  H  L  P  *  R  I  Q  F  Q  E  C  V  K  I  E  N  W  L  T  D  F  *  S  D  H  N  S  I  G  Q  S  R  R  R  *  *  E  P  H  Y  Q  V  L  G  K  Y  L  V  W  Y  C  *  I  N  *  D  N  S  L  V  Q  *  N  S  P  L  L  V  M  R  K  T  R  I  F  L  C  S  V  F  Y  I  F  *  V  L  L  T  R  E  S  T  G  G  V  C  V  S  F  K  C  *  L  I  R  L  R  K  S  L  *  T  *  T  G  *  F  L  R  R  E  R  A  I  S  F  F  L  L  A  Q  G  W  R  F  S  K  M  V  E  N  S  K  L  I  *  S  C  S  L  P  G  P  V  Y  S  L  S  I  Q  D  T  I  L  Y  C  L  F  F  W  C  P  V  P  H  *  G  L  T  K  Y  R  F  P  H  S  V  H  N  R  A  R  I  R  H  L  *  L  V  V  K  G  Y  L  S  L  H  H  D  P  C  W  *  G  I  F  V  Y  A  S  E  T  R  L  V  T  Y  N  *  P  I  F  S  W  L  V  *  L  W  L  D  Y  *  N  I  Q  *  Y  E  *  L  N  C  I  Y  T  F  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0144J05.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82014" stop="82238"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSSLVLLNKLRQQPCSMKLSFVSNEKNAYFLVFSLLYLLSFIDTRKHRGCLCQLQMLTDQAEKVPLNLNGIIPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="95224" PGL_stop="93484"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95121" e_stop="94540"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="95121" e_stop="94540" e_length="582"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95121" stop="94540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95121" stop="94552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95120" stop="94542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278945" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGATTTCGAGATGTCGGCAAGAGGATGTGAAGGAGTGAGCGTGGTGAAGCCAGAGATGACCAAGAATACAAAGATAGCAAGCAAGTTTCAAAAGCAAAACTCTACAAAGAGTGTTGTTGATGGTACTACAAATAATGCAAGGAGTACCACCACCACAACAAGTTGTAGCTTCAAGATGCCTAATAGATCCCAATTATCCCCTATTAAGATTTTCAAACAACTTGGAGGAAAAATGGTTGCACTTATGAAGATGGTATCTTCTTCAAAGAGAAGTTGTAGGAAAGTTACTAATTCGTCAGAGAGAGCAACAATTTCTGCTAAGCCAACCGCTACCTTAAATATTGACTCACATAGAGCGGAGGCAATTGATGATTGTATTCAATTCATCAACTTGTCTTCTTCTTTGCCTAGATCTAATTCAGTGTCATAAGAGATCGGAAAAAATCTCTTGATAAGAAGCGTTTTATCGTGTTATTTATATTAATTGACCACTTTTGTATGGTTTTGTATCTATAAGTAGATTATATTTTTAACATTAGACGTGTGATTTGAATAGAATAATTATTTTGAACGACTTTCTA</gDNA_template>
            <first_frame> L  I  S  R  C  R  Q  E  D  V  K  E  *  A  W  *  S  Q  R  *  P  R  I  Q  R  *  Q  A  S  F  K  S  K  T  L  Q  R  V  L  L  M  V  L  Q  I  M  Q  G  V  P  P  P  Q  Q  V  V  A  S  R  C  L  I  D  P  N  Y  P  L  L  R  F  S  N  N  L  E  E  K  W  L  H  L  *  R  W  Y  L  L  Q  R  E  V  V  G  K  L  L  I  R  Q  R  E  Q  Q  F  L  L  S  Q  P  L  P  *  I  L  T  H  I  E  R  R  Q  L  M  I  V  F  N  S  S  T  C  L  L  L  C  L  D  L  I  Q  C  H  K  R  S  E  K  I  S  *  *  E  A  F  Y  R  V  I  Y  I  N  *  P  L  L  Y  G  F  V  S  I  S  R  L  Y  F  *  H  *  T  C  D  L  N  R  I  I  I  L  N  D  F  L </first_frame>
            <second_frame>  *  F  R  D  V  G  K  R  M  *  R  S  E  R  G  E  A  R  D  D  Q  E  Y  K  D  S  K  Q  V  S  K  A  K  L  Y  K  E  C  C  *  W  Y  Y  K  *  C  K  E  Y  H  H  H  N  K  L  *  L  Q  D  A  *  *  I  P  I  I  P  Y  *  D  F  Q  T  T  W  R  K  N  G  C  T  Y  E  D  G  I  F  F  K  E  K  L  *  E  S  Y  *  F  V  R  E  S  N  N  F  C  *  A  N  R  Y  L  K  Y  *  L  T  *  S  G  G  N  *  *  L  Y  S  I  H  Q  L  V  F  F  F  A  *  I  *  F  S  V  I  R  D  R  K  K  S  L  D  K  K  R  F  I  V  L  F  I  L  I  D  H  F  C  M  V  L  Y  L  *  V  D  Y  I  F  N  I  R  R  V  I  *  I  E  *  L  F  *  T  T  F   </second_frame>
            <third_frame>   D  F  E  M  S  A  R  G  C  E  G  V  S  V  V  K  P  E  M  T  K  N  T  K  I  A  S  K  F  Q  K  Q  N  S  T  K  S  V  V  D  G  T  T  N  N  A  R  S  T  T  T  T  T  S  C  S  F  K  M  P  N  R  S  Q  L  S  P  I  K  I  F  K  Q  L  G  G  K  M  V  A  L  M  K  M  V  S  S  S  K  R  S  C  R  K  V  T  N  S  S  E  R  A  T  I  S  A  K  P  T  A  T  L  N  I  D  S  H  R  A  E  A  I  D  D  C  I  Q  F  I  N  L  S  S  S  L  P  R  S  N  S  V  S  *  E  I  G  K  N  L  L  I  R  S  V  L  S  C  Y  L  Y  *  L  T  T  F  V  W  F  C  I  Y  K  *  I  I  F  L  T  L  D  V  *  F  E  *  N  N  Y  F  E  R  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0144J05.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95119" stop="94691"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFEMSARGCEGVSVVKPEMTKNTKIASKFQKQNSTKSVVDGTTNNARSTTTTTSCSFKMPNRSQLSPIKIFKQLGGKMVALMKMVSSSKRSCRKVTNSSERATISAKPTATLNIDSHRAEAIDDCIQFINLSSSLPRSNSVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="95224" e_stop="94550"/>
            <exon e_start="93494" e_stop="93484"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.937" e_score="0.976"/>
          <exon-only e_score="0.727"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="95224" e_stop="94550" e_length="675"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.937">
            <gDNA_intron_boundary i_start="94549" i_stop="93495" i_length="1055"/>
          </intron>
          <exon e_serial="2" e_score="0.727">
            <gDNA_exon_boundary e_start="93494" e_stop="93484" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95224" stop="94550"/>
              <exon start="93494" stop="93484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95121" stop="94552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAGGTATCACTTCTCTCACCACTTATACTAAAGTTAGTATATTTTCTTAAAAATATATATATAATTGTGTGGTGTTCGAGTCAGTTTGCGTTAAATCATCTTTGATTTCGAGATGTCGGCAAGAGGATGTGAAGGAGTGAGCGTGGTGAAGCCAGAGATGACCAAGAATACAAAGATAGCAAGCAAGTTTCAAAAGCAAAACTCTACAAAGAGTGTTGTTGATGGTACTACAAATAATGCAAGGAGTACCACCACCACAACAAGTTGTAGCTTCAAGATGCCTAATAGATCCCAATTATCCCCTATTAAGATTTTCAAACAACTTGGAGGAAAAATGGTTGCACTTATGAAGATGGTATCTTCTTCAAAGAGAAGTTGTAGGAAAGTTACTAATTCGTCAGAGAGAGCAACAATTTCTGCTAAGCCAACCGCTACCTTAAATATTGACTCACATAGAGCGGAGGCAATTGATGATTGTATTCAATTCATCAACTTGTCTTCTTCTTTGCCTAGATCTAATTCAGTGTCATAAGAGATCGGAAAAAATCTCTTGATAAGAAGCGTTTTATCGTGTTATTTATATTAATTGACCACTTTTGTATGGTTTTGTATCTATAAGTAGATTATATTTTTAACATTAGACGTGTGATTTGAATAGAATAATTATTTTGAA : CAAATAATAAA</gDNA_template>
            <first_frame> Q  R  Y  H  F  S  H  H  L  Y  *  S  *  Y  I  F  L  K  I  Y  I  *  L  C  G  V  R  V  S  L  R  *  I  I  F  D  F  E  M  S  A  R  G  C  E  G  V  S  V  V  K  P  E  M  T  K  N  T  K  I  A  S  K  F  Q  K  Q  N  S  T  K  S  V  V  D  G  T  T  N  N  A  R  S  T  T  T  T  T  S  C  S  F  K  M  P  N  R  S  Q  L  S  P  I  K  I  F  K  Q  L  G  G  K  M  V  A  L  M  K  M  V  S  S  S  K  R  S  C  R  K  V  T  N  S  S  E  R  A  T  I  S  A  K  P  T  A  T  L  N  I  D  S  H  R  A  E  A  I  D  D  C  I  Q  F  I  N  L  S  S  S  L  P  R  S  N  S  V  S  *  E  I  G  K  N  L  L  I  R  S  V  L  S  C  Y  L  Y  *  L  T  T  F  V  W  F  C  I  Y  K  *  I  I  F  L  T  L  D  V  *  F  E  *  N  N  Y  F  E  :  Q  I  I   </first_frame>
            <second_frame>  K  G  I  T  S  L  T  T  Y  T  K  V  S  I  F  S  *  K  Y  I  Y  N  C  V  V  F  E  S  V  C  V  K  S  S  L  I  S  R  C  R  Q  E  D  V  K  E  *  A  W  *  S  Q  R  *  P  R  I  Q  R  *  Q  A  S  F  K  S  K  T  L  Q  R  V  L  L  M  V  L  Q  I  M  Q  G  V  P  P  P  Q  Q  V  V  A  S  R  C  L  I  D  P  N  Y  P  L  L  R  F  S  N  N  L  E  E  K  W  L  H  L  *  R  W  Y  L  L  Q  R  E  V  V  G  K  L  L  I  R  Q  R  E  Q  Q  F  L  L  S  Q  P  L  P  *  I  L  T  H  I  E  R  R  Q  L  M  I  V  F  N  S  S  T  C  L  L  L  C  L  D  L  I  Q  C  H  K  R  S  E  K  I  S  *  *  E  A  F  Y  R  V  I  Y  I  N  *  P  L  L  Y  G  F  V  S  I  S  R  L  Y  F  *  H  *  T  C  D  L  N  R  I  I  I  L  N :   K  *  *  </second_frame>
            <third_frame>   K  V  S  L  L  S  P  L  I  L  K  L  V  Y  F  L  K  N  I  Y  I  I  V  W  C  S  S  Q  F  A  L  N  H  L  *  F  R  D  V  G  K  R  M  *  R  S  E  R  G  E  A  R  D  D  Q  E  Y  K  D  S  K  Q  V  S  K  A  K  L  Y  K  E  C  C  *  W  Y  Y  K  *  C  K  E  Y  H  H  H  N  K  L  *  L  Q  D  A  *  *  I  P  I  I  P  Y  *  D  F  Q  T  T  W  R  K  N  G  C  T  Y  E  D  G  I  F  F  K  E  K  L  *  E  S  Y  *  F  V  R  E  S  N  N  F  C  *  A  N  R  Y  L  K  Y  *  L  T  *  S  G  G  N  *  *  L  Y  S  I  H  Q  L  V  F  F  F  A  *  I  *  F  S  V  I  R  D  R  K  K  S  L  D  K  K  R  F  I  V  L  F  I  L  I  D  H  F  C  M  V  L  Y  L  *  V  D  Y  I  F  N  I  R  R  V  I  *  I  E  *  L  F  *   : T  N  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0144J05.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95128" stop="94691"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIFDFEMSARGCEGVSVVKPEMTKNTKIASKFQKQNSTKSVVDGTTNNARSTTTTTSCSFKMPNRSQLSPIKIFKQLGGKMVALMKMVSSSKRSCRKVTNSSERATISAKPTATLNIDSHRAEAIDDCIQFINLSSSLPRSNSVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="107597" PGL_stop="108762"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107597" e_stop="108260"/>
            <exon e_start="108684" e_stop="108762"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.939" acc_prob="0.000" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="107597" e_stop="108260" e_length="664"/>
          </exon>
          <intron i_serial="1" don_prob="0.939" acc_prob="0.000">
            <gDNA_intron_boundary i_start="108261" i_stop="108683" i_length="423"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108684" e_stop="108762" e_length="79"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107597" stop="108157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107598" stop="108260"/>
              <exon start="108684" stop="108762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107598" stop="108206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107598" stop="108145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107598" stop="108136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107598" stop="108116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107598" stop="108043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107598" stop="107852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240008" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATAATATAGATTTGTGTATCTGAATTCATAAATTCAAAAATATAATATTACGAAACCTTAAAAATTAAACTCATAAATTTTTAATTTTTAATCCGGTCTCTCTTTGCATAGCATCATTTTGCCATGTATATATAAAAATTACACCATATAGAAAGTATATAATATATGTTGCAAAATGAACCAAAATTTTGGAAGAAACAAATTCTTTTTTACTAATAATAGAAACATTGGAGTTGTCAAATATGCTCCAAAACGAAAGGGCAATATTTTGTTTATTTTGTCCATATACATGAATGACATGATAGGTTTTATGGTACAAAACAAAAATTGAGTATGTCATGCTCAAATTATAGTTTCTCATTTTATTTACATTTCTCATCGATATTTTGTATTTGTCTCGTTAAATCTTGATTAACGTCAGAAACTATCACAAAATATCACATTAAGGTAAAACCTTCTCTAGCTATAACAAAGGTAACTTCATATTCAGGCTCGAAATTGACCTCTCGCTTTATTATATTCCTATCATTTTTTTCTTTTTATATTCTTATATTCCTAATATCTCTTGCAGGATGGAACCTCACATTACATGAAAGGGATTATTCTTTGTCTTGCCTATTGTGTCATTGGTGCTTGTTTCTTTTTCCATAAAATTCCAATCA : ATATTGAAAACTATTCATCTGGGATCATGTCATCTTAACCAAGTTCATTCAGCAACGTGATGAACCATCAGAAAGAAAT</gDNA_template>
            <first_frame> E  *  Y  R  F  V  Y  L  N  S  *  I  Q  K  Y  N  I  T  K  P  *  K  L  N  S  *  I  F  N  F  *  S  G  L  S  L  H  S  I  I  L  P  C  I  Y  K  N  Y  T  I  *  K  V  Y  N  I  C  C  K  M  N  Q  N  F  G  R  N  K  F  F  F  T  N  N  R  N  I  G  V  V  K  Y  A  P  K  R  K  G  N  I  L  F  I  L  S  I  Y  M  N  D  M  I  G  F  M  V  Q  N  K  N  *  V  C  H  A  Q  I  I  V  S  H  F  I  Y  I  S  H  R  Y  F  V  F  V  S  L  N  L  D  *  R  Q  K  L  S  Q  N  I  T  L  R  *  N  L  L  *  L  *  Q  R  *  L  H  I  Q  A  R  N  *  P  L  A  L  L  Y  S  Y  H  F  F  L  F  I  F  L  Y  S  *  Y  L  L  Q  D  G  T  S  H  Y  M  K  G  I  I  L  C  L  A  Y  C  V  I  G  A  C  F  F  F  H  K  I  P  I   : N  I  E  N  Y  S  S  G  I  M  S  S  *  P  S  S  F  S  N  V  M  N  H  Q  K  E   </first_frame>
            <second_frame>  N  N  I  D  L  C  I  *  I  H  K  F  K  N  I  I  L  R  N  L  K  N  *  T  H  K  F  L  I  F  N  P  V  S  L  C  I  A  S  F  C  H  V  Y  I  K  I  T  P  Y  R  K  Y  I  I  Y  V  A  K  *  T  K  I  L  E  E  T  N  S  F  L  L  I  I  E  T  L  E  L  S  N  M  L  Q  N  E  R  A  I  F  C  L  F  C  P  Y  T  *  M  T  *  *  V  L  W  Y  K  T  K  I  E  Y  V  M  L  K  L  *  F  L  I  L  F  T  F  L  I  D  I  L  Y  L  S  R  *  I  L  I  N  V  R  N  Y  H  K  I  S  H  *  G  K  T  F  S  S  Y  N  K  G  N  F  I  F  R  L  E  I  D  L  S  L  Y  Y  I  P  I  I  F  F  F  L  Y  S  Y  I  P  N  I  S  C  R  M  E  P  H  I  T  *  K  G  L  F  F  V  L  P  I  V  S  L  V  L  V  S  F  S  I  K  F  Q  S  :  I  L  K  T  I  H  L  G  S  C  H  L  N  Q  V  H  S  A  T  *  *  T  I  R  K  K  </second_frame>
            <third_frame>   I  I  *  I  C  V  S  E  F  I  N  S  K  I  *  Y  Y  E  T  L  K  I  K  L  I  N  F  *  F  L  I  R  S  L  F  A  *  H  H  F  A  M  Y  I  *  K  L  H  H  I  E  S  I  *  Y  M  L  Q  N  E  P  K  F  W  K  K  Q  I  L  F  Y  *  *  *  K  H  W  S  C  Q  I  C  S  K  T  K  G  Q  Y  F  V  Y  F  V  H  I  H  E  *  H  D  R  F  Y  G  T  K  Q  K  L  S  M  S  C  S  N  Y  S  F  S  F  Y  L  H  F  S  S  I  F  C  I  C  L  V  K  S  *  L  T  S  E  T  I  T  K  Y  H  I  K  V  K  P  S  L  A  I  T  K  V  T  S  Y  S  G  S  K  L  T  S  R  F  I  I  F  L  S  F  F  S  F  Y  I  L  I  F  L  I  S  L  A  G  W  N  L  T  L  H  E  R  D  Y  S  L  S  C  L  L  C  H  W  C  L  F  L  F  P  *  N  S  N  Q :   Y  *  K  L  F  I  W  D  H  V  I  L  T  K  F  I  Q  Q  R  D  E  P  S  E  R  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0144J05.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108010" stop="108249"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTSETITKYHIKVKPSLAITKVTSYSGSKLTSRFIIFLSFFSFYILIFLISLAGWNLTLHERDYSLSCLLCHWCLFLFP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="113872" PGL_stop="110778"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113872" e_stop="113439"/>
            <exon e_start="112252" e_stop="112160"/>
            <exon e_start="111431" e_stop="111297"/>
            <exon e_start="110966" e_stop="110778"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="0.986"/>
          <exon-intron don_prob="0.978" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="113872" e_stop="113439" e_length="434"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="113438" i_stop="112253" i_length="1186"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112252" e_stop="112160" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.994">
            <gDNA_intron_boundary i_start="112159" i_stop="111432" i_length="728"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111431" e_stop="111297" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="111296" i_stop="110967" i_length="330"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="110966" e_stop="110778" e_length="189"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113872" stop="113439"/>
              <exon start="112252" stop="112160"/>
              <exon start="111431" stop="111297"/>
              <exon start="110966" stop="110796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113838" stop="113439"/>
              <exon start="112252" stop="112160"/>
              <exon start="111431" stop="111297"/>
              <exon start="110966" stop="110782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113830" stop="113439"/>
              <exon start="112252" stop="112167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113786" stop="113439"/>
              <exon start="112252" stop="112160"/>
              <exon start="111431" stop="111297"/>
              <exon start="110966" stop="110827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113751" stop="113439"/>
              <exon start="112252" stop="112160"/>
              <exon start="111431" stop="111297"/>
              <exon start="110966" stop="110786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113750" stop="113439"/>
              <exon start="112252" stop="112160"/>
              <exon start="111431" stop="111317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113750" stop="113439"/>
              <exon start="112252" stop="112160"/>
              <exon start="111431" stop="111375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113734" stop="113439"/>
              <exon start="112252" stop="112160"/>
              <exon start="111431" stop="111297"/>
              <exon start="110966" stop="110791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113692" stop="113439"/>
              <exon start="112252" stop="112160"/>
              <exon start="111431" stop="111297"/>
              <exon start="110966" stop="110778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339334" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113687" stop="113439"/>
              <exon start="112252" stop="112160"/>
              <exon start="111431" stop="111297"/>
              <exon start="110966" stop="110786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113683" stop="113439"/>
              <exon start="112252" stop="112160"/>
              <exon start="111431" stop="111297"/>
              <exon start="110966" stop="110894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113667" stop="113439"/>
              <exon start="112252" stop="112160"/>
              <exon start="111431" stop="111297"/>
              <exon start="110966" stop="110784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113614" stop="113439"/>
              <exon start="112252" stop="112160"/>
              <exon start="111431" stop="111297"/>
              <exon start="110966" stop="110895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACCTACCACCAACTTCCAAAACTCTCAAAATATCTTTGAAGGAAAAAATATCTACCCCAAAAGATATCTAACTACTTTACAACATTTGTAGCACATGATATTATTACATTGATGAACCCCTTCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG : AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG : ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAG : GTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> Y  L  P  P  T  S  K  T  L  K  I  S  L  K  E  K  I  S  T  P  K  D  I  *  L  L  Y  N  I  C  S  T  *  Y  Y  Y  I  D  E  P  L  Q  L  T  S  N  K  *  Y  Y  P  L  F  F  S  R  F  F  T  R  R  R  R  R  K  W  K  *  M  E  I  L  D  Q  I  E  V  M  F  I  Y  Q  K  R  K  K  Q  R  *  K  R  K  Q  E  S  I  L  M  A  L  H  Q  K  D  T  L  N  L  K  E  V  I  I  L  Q  L  M  L  I  T  S  I  S  T  L  L  L  M  T  Q  F  P  K  I  S  N  S  N  V  S  K  M  I  L  R :   N  W  F  T  M  A  A  K  *  Q  R  N  L  L  K  Q  N  I  T  K  I  L  I  A  L  T  S  S  I  T  R :   Q  E  Q  D  L  S  K  W  R  I  M  R  T  L  L  I  *  E  L  I  I  L  L  I  Q  A  M  F  T  R  G  I  Q  L  L  M  I  G  F  L  L  L  L  M  R :   L  I  L  S  Q  E  N  H  T  E  V  I  T  E  I  E  S  L  I  K  T  V  S  A  Y  F  V  F  L  *  S  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </first_frame>
            <second_frame>  T  Y  H  Q  L  P  K  L  S  K  Y  L  *  R  K  K  Y  L  P  Q  K  I  S  N  Y  F  T  T  F  V  A  H  D  I  I  T  L  M  N  P  F  N  *  H  Q  T  N  N  I  T  L  F  F  F  Q  D  F  L  Q  E  E  E  E  E  N  G  S  E  W  K  Y  *  T  K  *  K  *  C  S  F  I  K  R  G  R  N  K  D  R  R  G  N  K  R  V  F  *  W  H  C  T  K  K  T  H  *  T  S  K  K  *  L  F  F  N  L  C  *  S  H  Q  S  L  P  F  F  S  *  H  N  S  R  K  S  R  I  P  T  S  R  K  *  S  S   : E  I  G  L  Q  W  Q  P  S  D  R  G  I  Y  *  N  R  I  L  Q  R  S  *  L  H  *  Q  A  A  S  H   : D  R  N  R  I  Y  Q  S  G  E  *  *  E  H  F  *  Y  R  S  *  L  Y  Y  *  S  K  P  C  L  Q  G  E  S  S  Y  *  *  L  D  S  F  C  C  *  *   : G  *  F  Y  L  R  K  T  T  Q  K  *  *  L  K  L  S  L  *  *  R  Q  Y  L  L  I  L  Y  F  C  E  A  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </second_frame>
            <third_frame>   P  T  T  N  F  Q  N  S  Q  N  I  F  E  G  K  N  I  Y  P  K  R  Y  L  T  T  L  Q  H  L  *  H  M  I  L  L  H  *  *  T  P  S  T  N  I  K  Q  I  I  L  P  S  F  F  F  K  I  F  Y  K  K  K  K  K  K  M  E  V  N  G  N  I  R  P  N  R  S  D  V  H  L  S  K  E  E  E  T  K  I  E  E  E  T  R  E  Y  F  D  G  I  A  P  K  R  H  T  K  P  Q  R  S  D  Y  S  S  T  Y  V  D  H  I  N  L  Y  P  S  S  H  D  T  I  P  E  N  L  E  F  Q  R  L  E  N  D  P  Q  :  K  L  V  Y  N  G  S  Q  V  T  E  E  F  I  E  T  E  Y  Y  K  D  L  N  C  I  D  K  Q  H  H  T  :  T  G  T  G  F  I  K  V  E  N  N  E  N  T  F  N  I  G  A  D  Y  T  T  D  P  S  H  V  Y  K  G  N  P  A  T  N  D  W  I  P  S  A  V  D  E  :  V  N  F  I  S  G  K  P  H  R  S  D  N  *  N  *  V  F  D  K  D  S  I  C  L  F  C  I  S  V  K  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0144J05.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113756" stop="113439"/>
                    <exon start="112252" stop="112160"/>
                    <exon start="111431" stop="111297"/>
                    <exon start="110966" stop="110925"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPSTNIKQIILPSFFFKIFYKKKKKKMEVNGNIRPNRSDVHLSKEEETKIEEETREYFDGIAPKRHTKPQRSDYSSTYVDHINLYPSSHDTIPENLEFQRLENDPQKLVYNGSQVTEEFIETEYYKDLNCIDKQHHTTGTGFIKVENNENTFNIGADYTTDPSHVYKGNPATNDWIPSAVDEVNFISGKPHRSDN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="113830" e_stop="113439"/>
            <exon e_start="112252" e_stop="112076"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113830" e_stop="113439" e_length="392"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="113438" i_stop="112253" i_length="1186"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="112252" e_stop="112076" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113830" stop="113439"/>
              <exon start="112252" stop="112167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113718" stop="113439"/>
              <exon start="112252" stop="112076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341086" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAAATATCTACCCCAAAAGATATCTAACTACTTTACAACATTTGTAGCACATGATATTATTACATTGATGAACCCCTTCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG : AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTT</gDNA_template>
            <first_frame> E  K  I  S  T  P  K  D  I  *  L  L  Y  N  I  C  S  T  *  Y  Y  Y  I  D  E  P  L  Q  L  T  S  N  K  *  Y  Y  P  L  F  F  S  R  F  F  T  R  R  R  R  R  K  W  K  *  M  E  I  L  D  Q  I  E  V  M  F  I  Y  Q  K  R  K  K  Q  R  *  K  R  K  Q  E  S  I  L  M  A  L  H  Q  K  D  T  L  N  L  K  E  V  I  I  L  Q  L  M  L  I  T  S  I  S  T  L  L  L  M  T  Q  F  P  K  I  S  N  S  N  V  S  K  M  I  L  R :   N  W  F  T  M  A  A  K  *  Q  R  N  L  L  K  Q  N  I  T  K  I  L  I  A  L  T  S  S  I  T  R  L  L  L  S  L  T  L  I  T  L  L  L  P  K  K  S  N  Y  S  R  T  S  L  *  R  H  R   </first_frame>
            <second_frame>  K  K  Y  L  P  Q  K  I  S  N  Y  F  T  T  F  V  A  H  D  I  I  T  L  M  N  P  F  N  *  H  Q  T  N  N  I  T  L  F  F  F  Q  D  F  L  Q  E  E  E  E  E  N  G  S  E  W  K  Y  *  T  K  *  K  *  C  S  F  I  K  R  G  R  N  K  D  R  R  G  N  K  R  V  F  *  W  H  C  T  K  K  T  H  *  T  S  K  K  *  L  F  F  N  L  C  *  S  H  Q  S  L  P  F  F  S  *  H  N  S  R  K  S  R  I  P  T  S  R  K  *  S  S   : E  I  G  L  Q  W  Q  P  S  D  R  G  I  Y  *  N  R  I  L  Q  R  S  *  L  H  *  Q  A  A  S  H  G  Y  Y  S  H  S  L  L  *  H  S  Y  Y  L  K  N  P  I  T  V  E  P  L  Y  D  D  I  V  </second_frame>
            <third_frame>   K  N  I  Y  P  K  R  Y  L  T  T  L  Q  H  L  *  H  M  I  L  L  H  *  *  T  P  S  T  N  I  K  Q  I  I  L  P  S  F  F  F  K  I  F  Y  K  K  K  K  K  K  M  E  V  N  G  N  I  R  P  N  R  S  D  V  H  L  S  K  E  E  E  T  K  I  E  E  E  T  R  E  Y  F  D  G  I  A  P  K  R  H  T  K  P  Q  R  S  D  Y  S  S  T  Y  V  D  H  I  N  L  Y  P  S  S  H  D  T  I  P  E  N  L  E  F  Q  R  L  E  N  D  P  Q  :  K  L  V  Y  N  G  S  Q  V  T  E  E  F  I  E  T  E  Y  Y  K  D  L  N  C  I  D  K  Q  H  H  T  V  T  T  L  T  H  S  Y  N  T  L  I  T  *  K  I  Q  L  Q  S  N  L  S  M  T  T  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0144J05.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113756" stop="113439"/>
                    <exon start="112252" stop="112118"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPSTNIKQIILPSFFFKIFYKKKKKKMEVNGNIRPNRSDVHLSKEEETKIEEETREYFDGIAPKRHTKPQRSDYSSTYVDHINLYPSSHDTIPENLEFQRLENDPQKLVYNGSQVTEEFIETEYYKDLNCIDKQHHTVTTLTHSYNTLIT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 141 chains have been computed
$ 
$ memory statistics:
$ 270784 bytes spliced alignments in total
$ 72 spliced alignments have been stored
$ 3760 bytes was the average size of a spliced alignment
$ 19416 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1765 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 166 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 02:54:17
-->
