<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 02:54:20"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339744" ref_strand="-" ref_description="SGN-U339744        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gctggagatggtgcagaaagtaggtgcacacttcccgatggcgtcagaaagtgacccttccaaccaatggcaaagaagtttaggaaagtgacttgcccatataaaaggcactttcctaaacacttttcttcagtttttgcaacttgataaaaacttttcaagaactcttgcaaaggctctacaaagtaaaggcagaattattccaagaacaacagcaatatcttgagcttttcgtctagttgtttaggaatatattctcttgttcttaaactgtaaaccattcctgaatctataaaggatttggtgtgttgtgttaaaagtctaggttgtccaggtgggatagcttagtgggtagattgttttctacttaggcttgttaagcaatagaggactattgcttaacggtaagattcataactctttcttacgtttggtgtaatcgtgttttacttttgcttttgaagattagtgaaaacgattgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3610" stop="4698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3910" g_stop="4397" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="501"/>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-U339744" ref_strand="-">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339744" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3910" e_stop="4397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGAGATGGTGCAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAGTGTGACCCTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTGAACACTTTTCTCTAGTTTTTGCAACTTGATAAACACTTTTCAAGAACTCTTGCAAAGGCTAATACAAAGCAAAGGCAGAATCATTCCTAGGACAACAGCAATATCTGGAGCTTTTCGTCTAATTGTTTAGGAATTTATTCTCTTGTTCTTAAATTGTAAACCACTCCTAAATCTATAAAGGAATTGGTGTGTTGTGTTCAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTTCTACTTTGGCTTGTTGAGCAATAGAGGTCTATTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTTGCTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAA</genome_strand>
        <mrna_strand>GCTGGAGATGGTGCAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAA--GTGACCCTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACACTTTTCTTCAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCT-CTACAAAGTAAAGGCAGAATTATTCCAAGAACAACAGCAATATCTTGAGCTTTTCGTCTAGTTGTTTAGGAATATATTCTCTTGTTCTTAAACTGTAAACCATTCCTGAATCTATAAAGGATTTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTG-TTTTCTACTTAGGCTTGTTAAGCAATAGAGGACTATTGCTTAACGGTAAGATTCATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTTACTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345812" ref_strand="+" ref_description="SGN-U345812        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 2e-39, score=159) genbank/nr: gi|77548751|gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)] >gi|62701868|gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)] (evalue: 1e-101, score=372)">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="-" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27394" stop="25987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27094" g_stop="26287" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="-" ref_id="SGN-U345812" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27094" e_stop="26287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTACAAAAGGTTTGACAGCTATATGGCGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAAGGATGATTCGTTCATCTATCTGGTGCTTTATGTAGATGATATGCTGATAGCTGCAAAGAAGAAGTATGACATTCATAAGCTGAAGGGTTTACTTAGTGCGGAGTTTGAGATGAAGGATCTGGGAGCTGCTCGGAAGATTCTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCTATTGATAACCCTAGTGCTGCCAATATCCACCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGTCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGTAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330105" ref_strand="+" ref_description="SGN-U330105        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 3e-26, score=115) genbank/nr: putative(evalue: 9e-48, score=192)">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="-" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28053" stop="26805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27753" g_stop="27105" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="-" ref_id="SGN-U330105" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27753" e_stop="27105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTGTGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATGCATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATATAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTACACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345275" ref_strand="+" ref_description="SGN-U345275        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G35710.1 | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative, similar to many predicted protein kinases | chr1:13222152-13225893 FORWARD | Aliases: F14D7.1, F14D7_1 (evalue: 6e-35, score=144) genbank/nr: Leucine(evalue: 8e-38, score=160)">
      <seq>tcaacttgtgggggaataattttgacatcgattcaacattgagcttccttgaatcattgacaaactgtaggaatctaagagtactcacgcttggtggtaatccgttggatggtgttttgcctgcatctgttgggaatttctcaaactgcttgcaaatatgtgaagcatctaaatgtaaactgaatggtgtcatttcaaaacaaattactaatcttactggattgacaaggatgagtctgtcgaacaatcagttgataggccatattccaacaacagtgcaaggaatgctgaaccttcaagaactttacctatgaagcaacaagttagaaggagccataccagatgttatctgcagttgacagtatcttggtgcattagaattgtcagagaatcaattttctagtttcgttccaccatgcttagggaatgttactagtttgaggacactctatctagataacaacaagctggattctagattacctgcaagattggggggacttcaaaacatcatagagttcaatatttcatccaattatttgagtggagaaattccgctagagagcggaaacttgaatggtgcaacactgattgatctgtcaaataattatttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41373" stop="42589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41673" g_stop="42289" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-U345275" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41673" e_stop="42289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTTGTGGGGGAATAATTTTGTCAGCGATTCAACATTGAGCTTCCTTGAATCATTGACAAACTGTAGGAATCTAAGAGTACTCACGCTTGGTGGTAATCCGTTGGATGGTGTTTTGCCTGCATCTGTTGGTAATTTCTCAAACTCCTTGCAAATTTTTGAAGCATCTAAATGTAAACTGAAGGGTGTCATTTCAAAACAAATTACTAATCTTACTGGATTGACAAGGATGAGTCTGTCGAACAATCAGTTGATAGGTCATATTCCAAAAACAGTGCAAGGAATGCTGAACCTTCAAGAACTTTACCTAGGAAGCAACAAGTTAGAAGGAGCCATACCAGATGTTATCTGCAGTTTACAGTATCTTGGTGCATTAGAATTGTCAGAAAATCAATTTTCTAGTTCCGTTCCACCATGCTTAGGGAATGTTACTAGTTTGAGGACACTCTATCTAGATAACAACAAGCTGGATTCTAGATTACCTGCAAGATTGGGGGGACTTCAAAACATCATAGAGTTCAATATTTCATCCAATTATTTGAGTGGAGAAATTCCGCTAGAGAGCGGAAACTTGAAGGGTGCAACACTGATTGATCTGTCAAATAATTATTTTTCT</genome_strand>
        <mrna_strand>TCAACTTGTGGGGGAATAATTTTGACATCGATTCAACATTGAGCTTCCTTGAATCATTGACAAACTGTAGGAATCTAAGAGTACTCACGCTTGGTGGTAATCCGTTGGATGGTGTTTTGCCTGCATCTGTTGGGAATTTCTCAAACTGCTTGCAAATATGTGAAGCATCTAAATGTAAACTGAATGGTGTCATTTCAAAACAAATTACTAATCTTACTGGATTGACAAGGATGAGTCTGTCGAACAATCAGTTGATAGGCCATATTCCAACAACAGTGCAAGGAATGCTGAACCTTCAAGAACTTTACCTATGAAGCAACAAGTTAGAAGGAGCCATACCAGATGTTATCTGCAGTTGACAGTATCTTGGTGCATTAGAATTGTCAGAGAATCAATTTTCTAGTTTCGTTCCACCATGCTTAGGGAATGTTACTAGTTTGAGGACACTCTATCTAGATAACAACAAGCTGGATTCTAGATTACCTGCAAGATTGGGGGGACTTCAAAACATCATAGAGTTCAATATTTCATCCAATTATTTGAGTGGAGAAATTCCGCTAGAGAGCGGAAACTTGAATGGTGCAACACTGATTGATCTGTCAAATAATTATTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344226" ref_strand="+" ref_description="SGN-U344226        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 2e-07, score=59.3)">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="-" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49386" stop="48327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49086" g_stop="48628" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="-" ref_id="SGN-U344226" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49086" e_stop="48628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACACAGTAAAAAAATAGTTTAA-TTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAATGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACATTGAACTTTGATAGAAGAATCATATATATCTCTAAATAATTTTTTTTAAAAAAAATTAAAAGTAATAAATATAAATTTAAAATAAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGTCATTTTATAACAGCAGGGGTAAATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGCCACTTTTATAACGAGGGGTATATGAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCTTTTTCCCTTTTATATATAACTATAA</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTATTTTTTA-AAATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321504" ref_strand="+" ref_description="SGN-U321504        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | anthranilate synthase, alpha subunit, component I-2 (ASA2), identical to SP:P32069 | chr2:12700948-12704042 FORWARD | Aliases: T27A16.21, T27A16_21(evalue: 1e-68, score=238) genbank/nr: gi|12830362|emb|CAC29060.1| anthranilate synthase alpha subunit [Catharanthus roseus](evalue: 2e-80, score=279)">
      <seq>acctctgcaacatataaccgtcaaattccatttctcctcaaattttttcaaagctcaaatgctgtaaacactcatgaaaaccctagccgtatctcatcaccgaccggttatctccggcaccggtcaccgctcctccattttctctggtcacagggctacttcgctctctttctctaggtcccctgtatcggctgctcgacttcggattctcaaatgctccgctgctatttctcctccttcattagtggacgactcagtgaagttcaaggaggctgccaagcatgggaatttgatccccctttacaggtctatattctccgatcacttaactccggtccttgcttaccgctgtctagtgaaggaagatgatagggaagctccgagcttcttgttcgagtctgtagagcctggtttgaaagcttctaatgttggtcgatacagtgtgattggggcccagccaacaatggaaattgttgcaaaagagaacatggtgacaattatggatcaccttgaaggaagcagaacagaggaatttgaggaagatccaatgagcattcctcgtaggattatggaaaaatggaaacctcaatgcataaatgagcttcctgaagcattttgtggaggttgggttggtttcttctcatatgatactgtgcgttacgtagagaaaaaaaagcctacctttctcaaatgctccaatggatgataggaaccttcctgatcttcatctaggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65152" stop="69145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65452" g_stop="65696" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65697" i_stop="66981" i_length="1285">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66982" g_stop="67166" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="430" r_length="185" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67167" i_stop="67565" i_length="399">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67566" g_stop="67755" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="620" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67756" i_stop="68731" i_length="976">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68732" g_stop="68845" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="735" r_length="115" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-U321504" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65452" e_stop="65696"/>
          <exon e_start="66982" e_stop="67166"/>
          <exon e_start="67566" e_stop="67755"/>
          <exon e_start="68732" e_stop="68845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCTGCAACATATAACCGTCAAATTCCATTTCTTTCACCATTTTTTCAAAGCTCAAATGCTGTAAACACTCATGAAAACCCTAGCCGTATCTCATCACCGACCGGTTATCTCCGGCACCGGTCACCGCTCCTCCATTTTCTCCGGTCACAGGGCTACTTCGCTCTCTTTCTCTAGGTCCCCTGTATCGGCTGCTCGACTTCGGATTCTCAAATGCTCCGCTGCTATTTCTCCTCCTTCATTAGGTAATCTTTGTGTTTGTTTAATTCAGTTGTTGGATCCAGAATTTATGACTGTAGTTACTTACCTAGATATTTAATTTGTTGAAATCTCAGTTATTGAATTAGTTTCGCCACCTTCATTTGGTATCCTCTATGTCTATTTAATCTAGAGATAGTTCTAGCATTTTAATTCGGCTAGTTTGGATTCTGCTGCATTGCTTACTCAGCTATATATGCGGCATTAATGTTTTTTTCTCTCAAATAAATAAATAAATCTTAACTGTATATATTTGATTTTGAAATGAATCCAAAAGTTTAAGTCATTGCCTTTTCTGCTTCTCTGGAACTTTAGCATTAATATGTACAAAAACTTTACTTTCAACTGCTGAAAAGTTTGGCTTCCTTCCATTTAATTTAGAGGTGGATTCAAGATTTTTTAGTGCAGAGAGTAGCGGATCCAGGATTTCCATTGAGGGGGGTTTAAAAAGAATGCTAAATAGTGCTGATTGATAAGCATGTTAGATCACATATGAGAGGCTACACTTGATTTCTATTGAATGGTAAAGTAAAAAGTTAGTTGGAACTTAGAAGAATTAAACAAGCAAGGAACCAAGATATATAGCTTAGCTCTTCATTGTACCAGATTTCAATCACTAATTTAATCAAGCAATTAATGATCAGCTTAATGAATAAATAAAAATAAAACATGATTAGCACTGTAACAAAGAAGAAGCCGTTTCATTTATTTAGAGAAAACAATTAACGCTGAAGCTAAAACATTAAAAAATGTTACTAGCCAGATTCGAACCCACACGCCTATTAAGCTCTGAACCCCCATAGCCGCTGAACCAAGCCCCTTACTTTGTTGAGGGGGTTAATGTTAAATATTTTAATAAACTACAGATTTGATCCTATATACACAGTGTGATTTTTATCAGAACCCCTGAACTCCATGTAGATCCGCCCTTGGGGACAGATAAGCGATGTGTTTCTTGATCCTATGTGGCAATCAACTTGAACTTATCATTGACAGCATAGAATATAAAGTTGCCACCCCTCTCCTCTAAATGAGTGCATTTACTTTTGGAATCGACCAAGAAAGGATCTTACCTCAAGATTTGACTGCCCCATTTAGGAGTTGAATTAAAAAAATATGAAGTAATATATATAGACAGAGTCGAGGGCATTTATTGTGTTTGCACTACTGTCAACAGTGCATATCTATTCACTTACTTTATTTGCTGGACATTAATTTCATGATGGTAACTTTTGGCTGCCTTCTGGTTCTGAAATGGATTACTTTGTGTAGTGGACGACTCAGTGAAGTTCAAGGAGGCTGCCAAGCATGGGAATTTGATCCCCCTCTACAGGTCTATATTCTCCGATCACTTAACTCCGGTCCTTGCTTACCGCTGTCTAGTGAAGGAAGATGATAGGGAAGCTCCGAGCTTCTTGTTCGAGTCTGTAGAGCCTGGTTTGAAAGCTTCTAATGTTGTAAGCTCTTTGTTCTACCTCCATTTAGTTCCTTGATTGAAGCTGGAATAGTCAAAGGAAATTATATTGCTCCAACTTTAAATGAATGATGGGTTTGAAATGAAATTAATATATTCAGAAATCATGTATAAGTACTATAACTCACAACTTAATATATTTAAAAATAGTTCAAATTGTTTCAGTTGCCAAATCTTGAAACTTCTTTTGTTCCAAAATAGTGATACTGAAGTCCTCTTCAGGAAGGAGGGAGTGGTGAGATTTACAAAGAGCACATAGGGAGTTATTGATGTTTGTATTCTCATTACCTGCACTACCTGTGTTGGCACAACTCTGAACAATCAAAAAATGTACTTGCTTGATTACACCTTGCTATGTTTGTTGATGAGTTAATTATGCTAGGGTCGATACAGTGTGATTGGGGCCCAGCCAACAATGGAAATTGTTGCAAAAGAGAACATGGTGACAATTATGGATCACCTTGAAGGAAGCAGAACAGAGGAATTTGAGGAAGATCCAATGAGCATTCCTCGTAGGATTATGGAAAAATGGAAACCTCAATGCATAAATGAGCTTCCTGAAGCATTTTGTGGTAATAAATTATACTTCAACTGCTTGAGTTTATTAGCATTTATACTAATGTAGCTTGAGTCAATGAATCATCTGCTGCTTCACTGTGGACAAATCTAGTAAATGCTCCTCGTTATCTTTGTAGTTAGTGTCTCATGCCAGGAGCATTGAACTTGCTTTAAGTAGCTGGAATGGACAATCTCTATAATCTATCCATTTTCGTTTTCTCCAACTTTTTTTTTTTGGATTTGTAAAGTGAGTCTTCTTAAATTAGAGACGCTATTTTTTAAAATATTTGTTTTCAAAGTAGAAAAGAACAATTGTAAGCTGAATGATTTTTTTCTGTGAGATAATAGTATTAATTATAGTTTACTTGTTAAGACGTTATCATAGAAAAGTATTATATCATTATATCAAACAGTAGTACAGTGCGTCCATTCAATTGATGTAAAACTCTTATGTGTACCTTCAGGATAATAAAATCATTACCTTTTCCATTGAAAAAAAGGGAAGGATAAAATCTAAAAAAAATAAAAATAATTATTAGTTACTGTGACAGAGTAATTAAAGAGACATTTAAATGATTTTGATTTCCCACAACATGAAGCAGAAAGAAGTGATGTGAAATGGAATCACATTTTAAGATGGTATACATATAAAATAAAAACTATTAGTAACTCTAATTTATAGTGGGAGAATGGAAGAGGAAGAGAACTGTCTTGTTGATTTACGCTATCAATTTAAGGAGTGTAATAATTGAAAATTATGCTAGTTTCATATATTTGAATAAAGTAAGAATTTAATCTGAAAAATCTAAGATGAAGTAAGAATCCACATCAAAAAGTTGGAAAGAGGGAAGGATGAAGAAATATTATGTGTTGAATAAGACTAGGCCTATAGGTTTCGGAAGGTATATGATAATTGATACCTTTATACACAAATTTCATTCGAGAAGGAGTAACTTAACTCTAAATAATGCTGTAGTTTTTCCTTTGCAGGAGGTTGGGTTGGTTTCTTCTCATATGATACTGTGCGTTACGTAGAGAAAAAGAAG-CTACCTTTCTCAAATGCTCCAATGGATGATAGGAACCTTCCTGATCTTCATCTAGGAC</genome_strand>
        <mrna_strand>ACCTCTGCAACATATAACCGTCAAATTCCATTTCTCCTCAAATTTTTTCAAAGCTCAAATGCTGTAAACACTCATGAAAACCCTAGCCGTATCTCATCACCGACCGGTTATCTCCGGCACCGGTCACCGCTCCTCCATTTTCTCTGGTCACAGGGCTACTTCGCTCTCTTTCTCTAGGTCCCCTGTATCGGCTGCTCGACTTCGGATTCTCAAATGCTCCGCTGCTATTTCTCCTCCTTCATTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACGACTCAGTGAAGTTCAAGGAGGCTGCCAAGCATGGGAATTTGATCCCCCTTTACAGGTCTATATTCTCCGATCACTTAACTCCGGTCCTTGCTTACCGCTGTCTAGTGAAGGAAGATGATAGGGAAGCTCCGAGCTTCTTGTTCGAGTCTGTAGAGCCTGGTTTGAAAGCTTCTAATGTT...............................................................................................................................................................................................................................................................................................................................................................................................................GGTCGATACAGTGTGATTGGGGCCCAGCCAACAATGGAAATTGTTGCAAAAGAGAACATGGTGACAATTATGGATCACCTTGAAGGAAGCAGAACAGAGGAATTTGAGGAAGATCCAATGAGCATTCCTCGTAGGATTATGGAAAAATGGAAACCTCAATGCATAAATGAGCTTCCTGAAGCATTTTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTTGGGTTGGTTTCTTCTCATATGATACTGTGCGTTACGTAGAGAAAAAAAAGCCTACCTTTCTCAAATGCTCCAATGGATGATAGGAACCTTCCTGATCTTCATCTAGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321505" ref_strand="+" ref_description="SGN-U321505        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | anthranilate synthase, alpha subunit, component I-2 (ASA2), identical to SP:P32069 | chr2:12700948-12704042 FORWARD | Aliases: T27A16.21, T27A16_21(evalue: 0, score=679) genbank/nr: gi|12830362|emb|CAC29060.1| anthranilate synthase alpha subunit [Catharanthus roseus](evalue: 0, score=753)">
      <seq>gcaaaatagaacatgttgacaattatggatcaccttgggggaagcagaacatatgaatttgaggaagatccaataaccattcctagtatgattatggaaaaatggaaacctcaatgcataaatgagcttcctgaagcattttgtggaggttgggttggtttcttctcatatgatactgtgcgttacgtagagaaaaagaagctacctttctcaaatgctccaatggatgataggaaccttcctgatcttcatctaggactttatgatgatgtaattgtgtttgatcatgtggaaaagaaagcatttgtcatacattgggtgcggttagatcgctttgcttcagtagaggaggcctacaatgatggtacaaccagattagaagcattgttgtctagagtacatgatattgtacctcctacactggcttcagggtcaataaaacttcatactagtctatttggtacttcattgaaaaattcaaccatgacaagcgaagactaccagaaggctgttttaaaggccaaggaacatatccttgctggggacattttccaaattgttcttagtcaacgttttgaaagacgaacctttgcagatccatttgaagtatacagagcactaagaatcgtaaatccaagtccttatatgacttatctacaggctcgggggtgtatacttgttgcttctagtcctgaaattcttactcgagtgaagaagaaaacagttaccaatcggcccctagcagggactattagaagaggtaagacacttgaggaagattatatgctggaaaatcaacttttgcacgacgagaaacagtgtgcagagcatataatgctggttgacttgggaagaaatgatgttggaaaggtctctaagcctggttcggtgaaagttgagaaactaatgaacattgaacggtattcccatgtcatgcacatcagctctacggttactggagagctacttgaccatttgagtagctgggatgctctgcgtgcagccctgcctgttggaaccgttagtggagcgcctaaggtaaaagccatggagctaattgatcaactggaagtcacaaggcgtggaccatacagcggtggatttggaggaatttcctttaccggagaaatggacattgccttagctttgagaatcatagtatttccaactggaacgcgttacgacactatgtactcgtacaaggatgtcgacaagcgacgagattggattgcttatctccaagctggagcaggtatagtggctgatagtgacccagctgatgagcaaaatgaatgcgaaaataaagctgcagctcttgtccgtgccattgatcttgctgagtcttcatttgttgacaaataatagatgccgtcctagtgtcagattttgtttcgtcgattatttcgtttcttgttggatgtagaaagttcgttttcaatctgaatagtccgttatgttgggaggtgactgaaaatccccatccacacacacactcacaatgtcatagtcattgcgtatgttggcttcatcaattttagcagggtgtcacaaagagcccagaattggcattgtgacttatagttctctggctgtcaattgatttcagtatttggcttttttcgggttctgtggttgtaccctanggctatcagaaacctaacctctctacttttgtaggataatattagtttgcatcctgccctctccagactcaacttatggcattgtactctaaattatgatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67311" stop="73085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67611" g_stop="67755" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67756" i_stop="68731" i_length="976">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68732" g_stop="68883" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="297" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68884" i_stop="69554" i_length="671">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.625" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69555" g_stop="69670" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="413" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69671" i_stop="69763" i_length="93">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.885" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69764" g_stop="70010" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="660" r_length="247" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70011" i_stop="70088" i_length="78">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.612" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70089" g_stop="70145" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="717" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70146" i_stop="70278" i_length="133">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70279" g_stop="70431" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="870" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70432" i_stop="71152" i_length="721">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71153" g_stop="71233" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="871" r_stop="951" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="71234" i_stop="71511" i_length="278">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="71512" g_stop="71598" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="952" r_stop="1038" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="71599" i_stop="72076" i_length="478">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="72077" g_stop="72785" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1039" r_stop="1747" r_length="709" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-U321505" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67611" e_stop="67755"/>
          <exon e_start="68732" e_stop="68883"/>
          <exon e_start="69555" e_stop="69670"/>
          <exon e_start="69764" e_stop="70010"/>
          <exon e_start="70089" e_stop="70145"/>
          <exon e_start="70279" e_stop="70431"/>
          <exon e_start="71153" e_stop="71233"/>
          <exon e_start="71512" e_stop="71598"/>
          <exon e_start="72077" e_stop="72785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAAGAGAACATGGTGACAATTATGGATCACCTTGAAGGAAGCAGAACAGAGGAATTTGAGGAAGATCCAATGAGCATTCCTCGTAGGATTATGGAAAAATGGAAACCTCAATGCATAAATGAGCTTCCTGAAGCATTTTGTGGTAATAAATTATACTTCAACTGCTTGAGTTTATTAGCATTTATACTAATGTAGCTTGAGTCAATGAATCATCTGCTGCTTCACTGTGGACAAATCTAGTAAATGCTCCTCGTTATCTTTGTAGTTAGTGTCTCATGCCAGGAGCATTGAACTTGCTTTAAGTAGCTGGAATGGACAATCTCTATAATCTATCCATTTTCGTTTTCTCCAACTTTTTTTTTTTGGATTTGTAAAGTGAGTCTTCTTAAATTAGAGACGCTATTTTTTAAAATATTTGTTTTCAAAGTAGAAAAGAACAATTGTAAGCTGAATGATTTTTTTCTGTGAGATAATAGTATTAATTATAGTTTACTTGTTAAGACGTTATCATAGAAAAGTATTATATCATTATATCAAACAGTAGTACAGTGCGTCCATTCAATTGATGTAAAACTCTTATGTGTACCTTCAGGATAATAAAATCATTACCTTTTCCATTGAAAAAAAGGGAAGGATAAAATCTAAAAAAAATAAAAATAATTATTAGTTACTGTGACAGAGTAATTAAAGAGACATTTAAATGATTTTGATTTCCCACAACATGAAGCAGAAAGAAGTGATGTGAAATGGAATCACATTTTAAGATGGTATACATATAAAATAAAAACTATTAGTAACTCTAATTTATAGTGGGAGAATGGAAGAGGAAGAGAACTGTCTTGTTGATTTACGCTATCAATTTAAGGAGTGTAATAATTGAAAATTATGCTAGTTTCATATATTTGAATAAAGTAAGAATTTAATCTGAAAAATCTAAGATGAAGTAAGAATCCACATCAAAAAGTTGGAAAGAGGGAAGGATGAAGAAATATTATGTGTTGAATAAGACTAGGCCTATAGGTTTCGGAAGGTATATGATAATTGATACCTTTATACACAAATTTCATTCGAGAAGGAGTAACTTAACTCTAAATAATGCTGTAGTTTTTCCTTTGCAGGAGGTTGGGTTGGTTTCTTCTCATATGATACTGTGCGTTACGTAGAGAAAAAGAAGCTACCTTTCTCAAATGCTCCAATGGATGATAGGAACCTTCCTGATCTTCATCTAGGACTTTATGATGATGTAATTGTGTTTGATCATGTGGAAAAGGTAGTTTAATTTTCTGTACCCAACAAACCTTCAATTTATTTTGTTTTCCAGATTTATATTAACCTATTTTTTTCCTATGGCCCATCTGGTTCATGAACATATGCTTTAGCTCTCAATGAAGTGCTTCAATATAAGCACTTCGATTTCACTTTTTGTACTAGGATAAATTTCTTCAATTTGTCGTGCATATTTGCCATTCATTATGGTGTTCTCTTTATTTTTCATTGAATTTCTTGGGTTTGAATATGTGGAATTGAGTAGTTAGTATCCCACATCGATGGTGATTGTGGCAATTTTTCTTCATATATGTTCTTTGACAATCCTCGTTCGATGAGCTATCTTTTGAAGTTGAGTTATGTCCTAGATCCATTTCTAAACATGCATGGTATGAGAGCTAGATCATTTACATTCTTGGTTTACCCAATGTTGGATACCCATATTATGTTGTCCGTGCAGGGGATGTGAAGTGTCTCACATTGGTAGAGGAAATGGGTTATTGTTTGGCCATGCTCACCCTTTGAGCTAGCTTTAGAATTGAATTAGCTTTTAGTGTTGGCTTATGCATAAGGTGCATTTCTTTACATGATTACTTTCATGATCAACTTCTAGTAGTAAGGTAATTATTTTTCAAGGTATTATGGTCCATTACTCAAATTTCTGCTTGATACCAGAAAGCATTTGTCATACATTGGGTGCGGTTAGATCGCTTTGCTTCAGTAGAGGAGGCCTACAATGATGGTACAACCAGATTAGAAGCTTTGTTGTCTAGAGTACATGATATTGTACCGTAAGTTAATTTCACTTCCTCTTCCAATAATTCTAACCTTATTTTCTGCTCCTTTCCTTTCCTTTATTTGGTTGTACTGGTTTCTTCTTTTAGTCCTACACTGGCTTCAGGGTCGATAAAACTTCATACTAGTCTATTTGGTACTTCATTGAAAAATTCAACCATGACAAGCGAAGACTACCAGAAGGCTGTTTTAAAGGCCAAGGAACATATCCTTGCTGGGGACATTTTCCAAATTGTTCTTAGTCAACGTTTTGAAAGACGAACCTTTGCAGATCCATTTGAAGTATACAGAGCACTAAGAATCGTAAATCCAAGTCCTTATATGACTTATCTACAGGTATGCCTGTTTTCCTTGAAACTTTGACTCTTCAAATTCTATTTCCCTGGTTTCTCACGAAGGATATGTTCTGATCAGGCTCGGGGGTGTATACTTGTTGCTTCTAGTCCTGAAATTCTTACTCGAGTGAAGAAGGTAAATCAACTGATGTTCTCTATTCTAATTTGCAGATTGCATGTCGATTTCACCCCGAATTCCATCTGTCATCGTGTCTACCATTAACAACTTTGCTAATGATCTAAAACCGTTCGTTTTTTTTTTGGTCCAGAAAACAGTTACCAATCGGCCCCTAGCAGGGACTATTAGAAGAGGTAAGACACTTGAGGAAGATTATATGCTGGAAAATCAACTTTTGCACGACGAGAAACAGTGTGCAGAGCATATAATGCTGGTTGACTTGGGAAGAAATGATGTTGGAAAGGTGAACACTCCTAATTTCCCTTTGTTTTTATTTGTCTCTATAGGTTAATGGAATTTGTGCATTATTAGAGGTGTATTATATAATCTTCTATCTGCCAAGATTCGATAAATCTACATCTGGAGTCTGGACTAGTAATTGGACAACTGAAAATAATTGCTCATCTTGTTGATTGTAATTCTCATCGTCACATTGCTTATTGCTACTTTTGACATCATCCTACTTCCTCTGGACTACATTGATCCTTTAATTCTATATGTTTAGGTTGTCAATATTTAGGTAGCATCTCATCTCTGTCATGTAATGATCTTGTTCTTGTTTTGGACTAAGTTGTGTAGAGTAAAGTTCTTCACTATGGTGCCGCTCCTATGTCGACACAACGTGGGTGTGGCATATGTACCGGATCAGGTCAATCGATTTTAGGTAGTTTGACCATAAGTTGATAGAGAAATTCAAGATAAATACAAAGATTTCAGAAATCAAAACAAAAGATAGGGTAAAAGCATAAATAGGCATGTGCATAATATATTGTACAGTGTTTATGCAATTCATCCTCCATTTATGCGTTGGCATTTTTGCTCAATCAGCTTCTATTATTTGAATTCCTAGGTACCTACTGAATTTTATTTGTTAATTAACTTCTCACGTTAGAGTCCTTGTAAGCATTTTATTGAAGCCGTCTTTCAGTACAATAATCTTTGACTAACTTCGATTCTTAATTCAGGTCTCTAAGCCTGGTTCGGTGAAAGTTGAGAAACTAATGAACATTGAACGGTATTCCCATGTCATGCACATCAGCTCTACGGTGAGTTCTTGTCATATGAATTGTATTTAATTATAGCTATTCTTTTACGTTAATTGGAGTCTTACATGTTACTTGCATAAGTTATGTTACCTAAGTGCAACAAAGTTTGCTTTCTGAGAGAAATGTCAGTTACAAATAACATTTGTTCTTATACATTACGTTACTTCCTTTCTGACATATTTCAGTAATTAGAGAATCATCACTAAGACTCTTGGATGTTGTGAAATATAATGATTTGTCTGGCTTGTTACAAGGTTTTGTTTTGTCAAAATTTGCAGGTTACTGGAGAGCTACTTGACCATTTGAGTAGCTGGGATGCTCTGCGTGCAGCCCTGCCTGTTGGAACCGTTAGTGGAGCGCCTAAGGTTCTACAATCATTTTGTACTTTTGGTATATTAATTATTTGAAAAGGCAGTGTCGGTTATTTGAGTTCTGGGTGCTTTCTGCTGCCTTAATGTCTTAAGTTATGGGAAGTAGCCAAACTGATGCCCCCAGTCTTTGGAAGTATGGTCTTTCCACTTCGCTGAATTTGATCAGTTGGTGGAGATATTGATAATCAATTCTTCTATCCTGAACAGAAAGTTTATGCATATCGTCTCTTTTTCATCAAGTGTTAACAAGTGAACTATTTATTATTTTCTGGAAGTGAAGAGGGGTGAAGGGGGCTGAGGGCTGAAGCTAATATTGGTACGGTTATGTGTTTAAGGTCAATCCATCTGGAACTTGTAAGAACTATTGATATGCTTTGAGGTGTTTCGTGAAGGAATTTATAGCTGTATAGTTTTAATTTTTTGTATGTTCACGAAGGGGGCGTAAATAATTCATGCCTCTTGCTTGGTATAGGTAAAAGCCATGGAGCTAATTGATCAACTGGAAGTCACAAGGCGTGGACCATACAGCGGTGGATTTGGAGGAATTTCCTTTACCGGAGAAATGGACATTGCCTTAGCTTTGAGAACCATAGTATTTCCAACTGGAACGCGTTACGACACTATGTACTCGTACAAGGATGTCGACAAGCGACGAGATTGGATTGCTTATCTCCAAGCTGGAGCAGGTATAGTGGCTGATAGTGACCCAGCTGATGAGCAAAATGAATGCGAAAATAAAGCTGCAGCTCTTGTCCGTGCCATTGATCTTGCTGAGTCTTCATTTGTTGACAAATAATAGATGCCGTCCTAGTGTCAGATTTTGTTTCGTCGATTATTTCGTTTCTTGTTGGATGTAGAAAGTTCGTTTTCAATCTGAATAGTCCGTTATGTTGGGAGGTGACTGAAAATCCCCATCCACACACACACTCACAATGTCATAGTCATTGCGTATGTTGGCTTCATCAATTTTAGCAGGGTGTCACAAAGAGCCCAGAATTGGCATTGTGACTTATAGTTCTCTGGCTGTCAATTGATTTCAGTATTTGGCTTTTTTCGGGTTCTGTGGTTGTACCCTAGGGCTATCAGAAACCTAACCTCTCTACTTTTGTAGGATAATATTAGTTTGCATCCTGCCCTCTCCAGACTCAACTTATGGCATTGTACTCTAAATTATGATCTTG</genome_strand>
        <mrna_strand>GCAAAATAGAACATGTTGACAATTATGGATCACCTTGGGGGAAGCAGAACATATGAATTTGAGGAAGATCCAATAACCATTCCTAGTATGATTATGGAAAAATGGAAACCTCAATGCATAAATGAGCTTCCTGAAGCATTTTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTTGGGTTGGTTTCTTCTCATATGATACTGTGCGTTACGTAGAGAAAAAGAAGCTACCTTTCTCAAATGCTCCAATGGATGATAGGAACCTTCCTGATCTTCATCTAGGACTTTATGATGATGTAATTGTGTTTGATCATGTGGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCATTTGTCATACATTGGGTGCGGTTAGATCGCTTTGCTTCAGTAGAGGAGGCCTACAATGATGGTACAACCAGATTAGAAGCATTGTTGTCTAGAGTACATGATATTGTACC.............................................................................................TCCTACACTGGCTTCAGGGTCAATAAAACTTCATACTAGTCTATTTGGTACTTCATTGAAAAATTCAACCATGACAAGCGAAGACTACCAGAAGGCTGTTTTAAAGGCCAAGGAACATATCCTTGCTGGGGACATTTTCCAAATTGTTCTTAGTCAACGTTTTGAAAGACGAACCTTTGCAGATCCATTTGAAGTATACAGAGCACTAAGAATCGTAAATCCAAGTCCTTATATGACTTATCTACAG..............................................................................GCTCGGGGGTGTATACTTGTTGCTTCTAGTCCTGAAATTCTTACTCGAGTGAAGAAG.....................................................................................................................................AAAACAGTTACCAATCGGCCCCTAGCAGGGACTATTAGAAGAGGTAAGACACTTGAGGAAGATTATATGCTGGAAAATCAACTTTTGCACGACGAGAAACAGTGTGCAGAGCATATAATGCTGGTTGACTTGGGAAGAAATGATGTTGGAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTAAGCCTGGTTCGGTGAAAGTTGAGAAACTAATGAACATTGAACGGTATTCCCATGTCATGCACATCAGCTCTACG......................................................................................................................................................................................................................................................................................GTTACTGGAGAGCTACTTGACCATTTGAGTAGCTGGGATGCTCTGCGTGCAGCCCTGCCTGTTGGAACCGTTAGTGGAGCGCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAGCCATGGAGCTAATTGATCAACTGGAAGTCACAAGGCGTGGACCATACAGCGGTGGATTTGGAGGAATTTCCTTTACCGGAGAAATGGACATTGCCTTAGCTTTGAGAATCATAGTATTTCCAACTGGAACGCGTTACGACACTATGTACTCGTACAAGGATGTCGACAAGCGACGAGATTGGATTGCTTATCTCCAAGCTGGAGCAGGTATAGTGGCTGATAGTGACCCAGCTGATGAGCAAAATGAATGCGAAAATAAAGCTGCAGCTCTTGTCCGTGCCATTGATCTTGCTGAGTCTTCATTTGTTGACAAATAATAGATGCCGTCCTAGTGTCAGATTTTGTTTCGTCGATTATTTCGTTTCTTGTTGGATGTAGAAAGTTCGTTTTCAATCTGAATAGTCCGTTATGTTGGGAGGTGACTGAAAATCCCCATCCACACACACACTCACAATGTCATAGTCATTGCGTATGTTGGCTTCATCAATTTTAGCAGGGTGTCACAAAGAGCCCAGAATTGGCATTGTGACTTATAGTTCTCTGGCTGTCAATTGATTTCAGTATTTGGCTTTTTTCGGGTTCTGTGGTTGTACCCTANGGCTATCAGAAACCTAACCTCTCTACTTTTGTAGGATAATATTAGTTTGCATCCTGCCCTCTCCAGACTCAACTTATGGCATTGTACTCTAAATTATGATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322176" ref_strand="+" ref_description="SGN-U322176        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | thiamine biosynthesis family protein / thiC family protein, contains Pfam profile: PF01964 ThiC family | chr2:12674111-12677016 FORWARD | Aliases: T27A16.27, T27A16_27(evalue: 0, score=672) genbank/nr: gi|15227584|ref|NP_180524.1| thiamin biosynthesis protein -related [Arabidopsis thaliana] gi|30684307|ref|NP_850135.1| thiamin biosynthesis protein -related [Arabidopsis thaliana] gi|25319657|pir||F84698 probable thiamin biosynthesis protein [imported] - Arabidopsis thaliana gi|3582335|gb|AAC35232.1| putative thiamin biosynthesis protein [Arabidopsis thaliana] gi|20260180|gb|AAM12988.1| putative thiamin biosynthesis protein [Arabidopsis thaliana] gi|22136156|gb|AAM91156.1| putative thiamin biosynthesis protein [Arabidopsis thaliana](evalue: 0, score=672)">
      <seq>gccgcatttacagctctaattcatttgcttcagacgttgataggaagatggcgtctgtccaaactgctttgacatcactcctatgcaagaaagggaacaataatccacaagtaaatgttccaagaagttccttcttgccagggtttgatttgacagggcaagttgcggttacagggagaagggaaacgcgtttcaattctttttcaagcccgagagcaacacttacctttgatcctcccagtactgataataaagagaagacaaagccaaagcacactgttgatcctaatgctcctgatttcctgccccttccaccattcgaacaatgctttccgaaaagctccaaggaatacagtgaagttatgcatgaagaaactggtcatgtactcaaagtcccatttcgacgtatccatctttccggggatgaaccacatttcgacacttatgataccagtggtcctcagggtgttaacccgcgcgttggacttcccaagctgcgcacggagtggattaacaggagggagaagttaggaggaccaaggtatactcaaatgttctatgctaagcagggaatcataactgaggaaatggtgtactgtgctgctcgtgagaagatggatccggaatttgtgaggtcagaagttgctcggggccgtgcaatcatcccttcaaacaagaagcaccctgagttggagccaatgatagtaggaagaaagttcttagtgaaagtcaatgccaacatcgggaactctgctgttgtaagctcgattgaagaagaagttcacaagcttcaatgggcaacaatgtggggtgcagatacgattatggatctctctactggtcgtcacatccacgagactcgtgagtggatcttgcgtaattctgctgtaccagtaggcactgtgccaatttaccaagcactagaaaaagtaaacgggattgctgagaatcttagttgggaagtgtttagggagaccttaattgaacaagctgagcaaggagttgattacttcacaatccatgccggagtccttctcaggtacatcccactgacagcaaaacggatgaccggaattgtttctcgtggaggctcaattcatgcaaagtggtgcttagcttatcacaaggagaatttcgcttatgaacattgggatgacatacttgacatctgtaatcagtacgatatatcgttatcanttggtgatggactgagacctggttcaatttatgatgcaaatgacaccgctcagtttgctgagctcttgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76974" stop="81242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77270" g_stop="77302" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77303" i_stop="78827" i_length="1525">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78828" g_stop="79149" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="355" r_length="322" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79150" i_stop="79393" i_length="244">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79394" g_stop="79521" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="483" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79522" i_stop="80157" i_length="636">
            <donor d_prob="0.509" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80158" g_stop="80942" g_length="785"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="1268" r_length="785" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-U322176" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1268</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77270" e_stop="77302"/>
          <exon e_start="78828" e_stop="79149"/>
          <exon e_start="79394" e_stop="79521"/>
          <exon e_start="80158" e_stop="80942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCATTTACAGCTCTAATTCATTTGCTTCAGGTACGTTTATTCTTATTAAATTATTAAAAACCCTTAATTGCGTGTCGAATCTTTCAAAAATATATATATAAAATGTTTACGAGTGTGTATCCATTGGATCTGATACAAATGAGGCAACACAATAACATTTACGTGAAGAGTCTGAGCAACACAGATTAAGCTGATAAATAAAAAGAAAATTTATGCATACCTTTTTCTCTATTAGATCTGTATATTCGTTACTTCCATCGCGAAAATTGCTCGTAGCTAGTAACTTTTTTTTTGTTAATTCTATCATTTCCCGTAAGCATTAGACTTTCGGATATATCAGCAGACATAAGGAGAAGTATTTATCAAAGAGGGAATCAGATGTATCAGAGAGGGGAGGGATGTACTTGAAAGGATATAGGAATTTATTAGCGAGAGGCAATTTGAGAATTTTAGAGATTATGATAAAATAAGATGCGTATTTAGATAATTTTTTCAAAAATAAATGAACACTTTTGGTCAAAAGGTGGTCTAGCGCAACCTCCAAGTAGGAATAGATTCTATGAGTCGTGATACAGTTAAGATAGGGGGCATTTCTAGCATTGAAAATCCTTATTCTTATTGAATAGTTCAAATAACTAGTTGAACGTACCTATTCTTTTCAAGAATAGCCTCCCGTTATCGAAAAGAAGGGCCCGAAGAAGAGATGACTGGCCATCCTTCTCATCCCCCTTAGGAAGTAGAGCGCGGTGAAAGAATTCTGTCGTTCAGTCGAAGGGGGCAGGTTTGCAGCTTCAGGATAACCCGAGCAGTGAAAGAGAAGTAAATCCTGTGTGATAAAATTAAAGTTACCTGGTACTTAGTGGAATAGTCGATAGACATGAATACTCGATTGAGGTGGATCTATGATTTAAATTTGATAGTTTACTTTTGCAATCATAGGTGCAGATGTTAATATTTGTTGAAACTTTAGTGTTTCGTATATTTTGTGTTAATATGATTAGTTCAGTTGAATCCGTTGATTATATATCGCATTTGATACTTGGAATGATCTTTCAAAACACAGCCAATAAATTAGAATGTCATTGTTCCACCATAGTCTTTGTGTTGATGATCAATATATTTTACCTAAAAACTAAAATGTCATCATTCGACGTGACCAAATCTAGTAAATCGATCCCTTACTTTCATTTTATGTTGTGCCATTTGACTTGAAACAGAGTTTAGGATAGGACGATTGTTGAAATACCTGGTTCAAAATATGTCACAACATTTATGTAGCTATATAAAACATGTTTAGGCGAAATGAGAAGTTAAAAGTTAAATTGCAAGTACTTTTTGCTATAACATATGATCTAGCTACAAATTCTGAAGTCTCCGTGGTGGTTCGTTTGCGGTTTTGGTTTGTGATATTCAACTAGTAGCATCACTCACTTTTTGTTGTATCATTTTACAAGCTTGATTTGTTCTAAAAATGTGTTTTTTTCCCTCATTCTGCTTATATATGAATGAACTTATAGTATTAAAATTTGTGAAACAATGGCTTTGTTATCCTTAGACGTTGATTGGAAGATGGCGTCTGTCCAAACTGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATAATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCGGTTACAGGGAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAGAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAGGTCTGCCTAGAATCCATCATGTCTTTGCTCTTCGAGATAACAATATTTGTTGAGGATTCAGTATGTGGAATTTGTAACACTAGTATACTATTGAGACATCTCTTTGATATCTCGAGTGAAATGGCTAAACGTTTAAAATCTCATTGTATAGCTTCACAGAAGAAATGCAGTACACATGCTTTATTTCAAATCTCTAAGCTCATTGGTTCGCGAAATGCTTATTAGTTGAATGTGCAATTTGCAGTGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTGGTAAGCCTGTTATCTATCCTTTTGATGATAACATCCCCTGCGATGAAATTTCTATTTGCGATTCTTGGAAGTTGAATTATCTGATCTTGGATGTTCATCCATATTTCATAAAATTGTTTTCTTTTAAAAAGATCTGGAATATTATTAGCTCTTAAAATGATTCAATATAGGCGATACCAATTAGTTGAATTTAAGTTTTAGTCATGTAGGTTTGTTTACTATAAGTACAATATTCGCTTTAGTCTTTTCAGAGATTATATACTAAGGGGAAATAATCAAATATAGAAACCTCTTAGTGCTATAGAACCTTATTCTTTTAAACATTGGATTGCGACGAATTTAAATGGAGGGACATAGAAGTGAGGATTCCTATAGTACATAACTAATATGGGATTAATGCTTCGTAGTTTATCTTTTGTATTATTAGCTATCAATTTCCACATTTGTTTTTTCTTTCTTTTCATCTGTTCGAGTCTTGCATATATTATTTTCACTCTGCTAAAGACAACCTTTTGAGTCAAAGTTGTTTGTACTTTATGTCAAATGAAACATTAAGCTAAATGTCATGTTGTGATTTTTTACATTATGATTTAGAACATAATCTATTTATATCATAATGATTATGCATCTAAATAGGACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGGAACTCTGCTGTTGTAAGCTCGATTGAAGAAGAAGTTCACAAGCTTCAATGGGCAACAATGTGGGGTGCAGATACGATTATGGATCTCTCTACTGGTCGTCACATCCACGAGACTCGTGAGTGGATCTTGCGTAATTCTGCTGTACCAGTAGGCACTGTGCCAATTTACCAAGCACTAGAAAAAGTAAACGGGATTGCTGAGAATCTTAGTTGGGAAGTGTTTAGGGAGACCTTAATTGAACAAGCTGAGCAAGGAGTTGATTACTTCACAATCCATGCCGGAGTCCTTCTCAGGTACATCCCACTGACAGCAAAACGGATGACCGGAATTGTTTCTCGTGGAGGCTCAATTCATGCAAAGTGGTGCTTAGCTTATCACAAGGAGAATTTCGCTTATGAACATTGGGATGACATACTTGACATCTGTAATCAGTACGATATATCGTTATCAATTGGTGATGGACTGAGACCTGGTTCAATTTATGATGCAAATGACACCGCTCAGTTTGCTGAGCTCTTGACT</genome_strand>
        <mrna_strand>GCCGCATTTACAGCTCTAATTCATTTGCTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTGATAGGAAGATGGCGTCTGTCCAAACTGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATAATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCGGTTACAGGGAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAGAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAG....................................................................................................................................................................................................................................................TGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGGAACTCTGCTGTTGTAAGCTCGATTGAAGAAGAAGTTCACAAGCTTCAATGGGCAACAATGTGGGGTGCAGATACGATTATGGATCTCTCTACTGGTCGTCACATCCACGAGACTCGTGAGTGGATCTTGCGTAATTCTGCTGTACCAGTAGGCACTGTGCCAATTTACCAAGCACTAGAAAAAGTAAACGGGATTGCTGAGAATCTTAGTTGGGAAGTGTTTAGGGAGACCTTAATTGAACAAGCTGAGCAAGGAGTTGATTACTTCACAATCCATGCCGGAGTCCTTCTCAGGTACATCCCACTGACAGCAAAACGGATGACCGGAATTGTTTCTCGTGGAGGCTCAATTCATGCAAAGTGGTGCTTAGCTTATCACAAGGAGAATTTCGCTTATGAACATTGGGATGACATACTTGACATCTGTAATCAGTACGATATATCGTTATCANTTGGTGATGGACTGAGACCTGGTTCAATTTATGATGCAAATGACACCGCTCAGTTTGCTGAGCTCTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324201" ref_strand="+" ref_description="SGN-U324201        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | thiamine biosynthesis family protein / thiC family protein, contains Pfam profile: PF01964 ThiC family | chr2:12674111-12677016 FORWARD | Aliases: T27A16.27, T27A16_27(evalue: 4e-77, score=285) genbank/nr: gi|15227584|ref|NP_180524.1| thiamin biosynthesis protein -related [Arabidopsis thaliana] gi|30684307|ref|NP_850135.1| thiamin biosynthesis protein -related [Arabidopsis thaliana] gi|25319657|pir||F84698 probable thiamin biosynthesis protein [imported] - Arabidopsis thaliana gi|3582335|gb|AAC35232.1| putative thiamin biosynthesis protein [Arabidopsis thaliana] gi|20260180|gb|AAM12988.1| putative thiamin biosynthesis protein [Arabidopsis thaliana] gi|22136156|gb|AAM91156.1| putative thiamin biosynthesis protein [Arabidopsis thaliana](evalue: 3e-75, score=285)">
      <seq>agagcatcttggtctgcctaatcgcgatgacgtgaagacaggtgtaatatcatataagatagctgctcatgcagctgatcttgcaaaaggtcacccgctatctcaagcctgggatgatgcacttagcaaggcaagatttgagttcagatggatggaccaattcgctttatcattggaccccgttactgcaatgtcctttcacgacgaaactttaccagccgatggggctaaagtggcacatttctgctctatgtgcgggcctaagttttgctccatgaaaataaccgaagatataagaaagtatgctgaaaatcatggttatggaaatgcagaggaagccattcagcagggcatggatgctatgagtgcagcgtttcaagctgcaaaaaaaaccattagtggggaacaacacggtgaggttggcggtgagatctacttgccagagaattacatcaactctttgaagagccaaaggaatgtgtaaagatcgaaaactggctcacagatttctgaagtgatcacaactccatcggccagtcaaggaggcggtagtaggagcctcattatcaagtgttagcttcaaatgctgactgatcaggctgagaaagtccctttgaacctgaacgggataattcctgcgtagggagcgtgcaatttcttttttcttgcttgcacagggatggcgattctccaaaatggttgaaaattcaaaattaatctgatcctgctctttgccaggaccagtttattcactgtctattcaagacaccatcttgtattgtttgtttttttggtgtcctgtaccgcattgaggcctgactaaatacagattcccgcactctgtacataacagagctcgaattcgacacctttgattggtagtaaaggggtatttatcactccatcacgacccttgttggtaaggcatattcgtgtatgcctctgagacgcgattggttacttacaattgaccaattttctcatggttagtctagctttggttggactattgaaacattcagttatatgaatgactcaattgcatatataccttcatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81027" stop="82956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81327" g_stop="81800" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81801" i_stop="81906" i_length="106">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.413" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81907" g_stop="82009" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="577" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82010" i_stop="82172" i_length="163">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.479" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82173" g_stop="82656" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="1061" r_length="484" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-U324201" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1061</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81327" e_stop="81800"/>
          <exon e_start="81907" e_stop="82009"/>
          <exon e_start="82173" e_stop="82656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCATCTTGGTCTGCCTAATCGCGATGACGTGAAGACAGGTGTAATATCATATAAGATAGCTGCTCATGCAGCTGATCTTGCAAAAGGTCACCCGCTATCTCAAGCCTGGGATGATGCACTTAGCAAGGCAAGATTTGAGTTCAGATGGATGGACCAATTCGCTTTATCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCTATGTGCGGGCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGAAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAGAATTACATCAACTCTTTGAAGAGCCAAAGGTGAGTATTACATTCTGCAAGTCCTTTGAAGACACTCGTATAATGCAGAGTCTTTGTGTATTCCGATTAAAGCTCCTTTCACTTACCTTAAAGAATACAATTTCAGGAATGTGTAAAGATCGAAAACTGGCTCACAGATTTCTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAGGTAAGTATCTAGTTTGGTACTGTTAAATAAACTGAGACAACAGCCTTGTTCAATGAAACTCTCCTTTGTTAGTAATGAGAAAAACGCGTATTTTCTTGTGTTCAGTCTTTTATATCTTTTAAGTTTTATTGACACGAGAAAGCACCGGGGGTGTCTGTGTCAGCTTCAAATGCTGACTGATCAGGCTGAGAAAGTCCCTTTGAACCTGAACGGGATAATTCCTGCGTAGGGAGCGTGCAATTTCTTTTTTCTTGCTTGCACAGGGATGGCGATTCTCCAAAATGGTTGAAAATTCAAAATTAATCTGATCCTGCTCTTTGCCAGGACCAGTTTATTCACTGTCTATTCAAGACACCATCTTGTATTGTTTGTTTTTTTGGTGTCCTGTACCGCATTGAGGCCTGACTAAATACAGATTCCCGCACTCTGTACATAACAGAGCTCGAATTCGACACCTTTGATTGGTAGTAAAGGGGTATTTATCACTCCATCACGACCCTTGTTGGTAAGGCATATTCGTGTATGCCTCTGAGACGCGATTGGTTACTTACAATTGACCAATTTTCTCATGGTTAGTCTAGCTTTGGTTGGACTATTGAAACATTCAGTAATATGAATGACTCAATTGCATATATACCTTCATATTT</genome_strand>
        <mrna_strand>AGAGCATCTTGGTCTGCCTAATCGCGATGACGTGAAGACAGGTGTAATATCATATAAGATAGCTGCTCATGCAGCTGATCTTGCAAAAGGTCACCCGCTATCTCAAGCCTGGGATGATGCACTTAGCAAGGCAAGATTTGAGTTCAGATGGATGGACCAATTCGCTTTATCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCTATGTGCGGGCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGAAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAGAATTACATCAACTCTTTGAAGAGCCAAAG..........................................................................................................GAATGTGTAAAGATCGAAAACTGGCTCACAGATTTCTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAG...................................................................................................................................................................CTTCAAATGCTGACTGATCAGGCTGAGAAAGTCCCTTTGAACCTGAACGGGATAATTCCTGCGTAGGGAGCGTGCAATTTCTTTTTTCTTGCTTGCACAGGGATGGCGATTCTCCAAAATGGTTGAAAATTCAAAATTAATCTGATCCTGCTCTTTGCCAGGACCAGTTTATTCACTGTCTATTCAAGACACCATCTTGTATTGTTTGTTTTTTTGGTGTCCTGTACCGCATTGAGGCCTGACTAAATACAGATTCCCGCACTCTGTACATAACAGAGCTCGAATTCGACACCTTTGATTGGTAGTAAAGGGGTATTTATCACTCCATCACGACCCTTGTTGGTAAGGCATATTCGTGTATGCCTCTGAGACGCGATTGGTTACTTACAATTGACCAATTTTCTCATGGTTAGTCTAGCTTTGGTTGGACTATTGAAACATTCAGTTATATGAATGACTCAATTGCATATATACCTTCATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325812" ref_strand="+" ref_description="SGN-U325812        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | josephin protein-related, similar to Josephin-like protein (Swiss-Prot:O82391) (Arabidopsis thaliana) | chr1:2245913-2246299 REVERSE | Aliases: F22G5.36, F22G5_36(evalue: 1e-08, score=57) genbank/nr: gi|15222372|ref|NP_172210.1| hypothetical protein [Arabidopsis thaliana] gi|38454076|gb|AAR20732.1| At1g07300 [Arabidopsis thaliana](evalue: 7e-07, score=57)">
      <seq>caatggtatcacttctctcaccacttatactaaagttagtatattttcttaaaaatatatatataattgtgtggtgttcgagtcagtttgcgttaaatcatctttgatttcgagatgtcggcaagaggatgtgaaggagtgagcgtggtgaagccagagatgaccaagaatacaaagatagcaagcaagtttcaaaagcaaaactctacaaagagtgttgttgatggtactacaaataatgcaaggagtaccaccaccacaacaagttgtagcttcaagatgcctaatagatcccaattatcccctattaagattttcaaacaacttggaggaaaaatggttgcacttatgaagatggtatcttcttcaaagagaagttgtaggaaagttactaattcgtcagagagagcaacaatttctgctaagccaaccgctaccttaaatattgactcacatagagcggaggcaattgatgattgtattcaattcatcaacttgtcttcttctttgcctagatctaattcagtgtcataagagatcggaaaaaatctcttgataagaagcgttttatcgtgttatttatattaattgaccacttttgtatggttttgtatctataagtagattatatttttaacattagacgtgtgatttgaatagaataattattttgaacgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="-" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95524" stop="94247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95224" g_stop="94547" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="678" r_length="678" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="679" polyA_stop="716"/>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="-" ref_id="SGN-U325812" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95224" e_stop="94547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGTATCACTTCTCTCACCACTTATACTAAAGTTAGTATATTTTCTTAAAAATATATATATAATTGTGTGGTGTTCGAGTCAGTTTGCGTTAAATCATCTTTGATTTCGAGATGTCGGCAAGAGGATGTGAAGGAGTGAGCGTGGTGAAGCCAGAGATGACCAAGAATACAAAGATAGCAAGCAAGTTTCAAAAGCAAAACTCTACAAAGAGTGTTGTTGATGGTACTACAAATAATGCAAGGAGTACCACCACCACAACAAGTTGTAGCTTCAAGATGCCTAATAGATCCCAATTATCCCCTATTAAGATTTTCAAACAACTTGGAGGAAAAATGGTTGCACTTATGAAGATGGTATCTTCTTCAAAGAGAAGTTGTAGGAAAGTTACTAATTCGTCAGAGAGAGCAACAATTTCTGCTAAGCCAACCGCTACCTTAAATATTGACTCACATAGAGCGGAGGCAATTGATGATTGTATTCAATTCATCAACTTGTCTTCTTCTTTGCCTAGATCTAATTCAGTGTCATAAGAGATCGGAAAAAATCTCTTGATAAGAAGCGTTTTATCGTGTTATTTATATTAATTGACCACTTTTGTATGGTTTTGTATCTATAAGTAGATTATATTTTTAACATTAGACGTGTGATTTGAATAGAATAATTATTTTGAACGA</genome_strand>
        <mrna_strand>CAATGGTATCACTTCTCTCACCACTTATACTAAAGTTAGTATATTTTCTTAAAAATATATATATAATTGTGTGGTGTTCGAGTCAGTTTGCGTTAAATCATCTTTGATTTCGAGATGTCGGCAAGAGGATGTGAAGGAGTGAGCGTGGTGAAGCCAGAGATGACCAAGAATACAAAGATAGCAAGCAAGTTTCAAAAGCAAAACTCTACAAAGAGTGTTGTTGATGGTACTACAAATAATGCAAGGAGTACCACCACCACAACAAGTTGTAGCTTCAAGATGCCTAATAGATCCCAATTATCCCCTATTAAGATTTTCAAACAACTTGGAGGAAAAATGGTTGCACTTATGAAGATGGTATCTTCTTCAAAGAGAAGTTGTAGGAAAGTTACTAATTCGTCAGAGAGAGCAACAATTTCTGCTAAGCCAACCGCTACCTTAAATATTGACTCACATAGAGCGGAGGCAATTGATGATTGTATTCAATTCATCAACTTGTCTTCTTCTTTGCCTAGATCTAATTCAGTGTCATAAGAGATCGGAAAAAATCTCTTGATAAGAAGCGTTTTATCGTGTTATTTATATTAATTGACCACTTTTGTATGGTTTTGTATCTATAAGTAGATTATATTTTTAACATTAGACGTGTGATTTGAATAGAATAATTATTTTGAACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321997" ref_strand="+" ref_description="SGN-U321997        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | calcium exchanger (CAX1), identical to high affinity calcium antiporter CAX1 (Arabidopsis thaliana) gi:9256741:gb:AAB05913, except a possible frameshift at base 58008. Sequence has been confirmed with 5 sequencing reads.; Ca2+:Cation Antiporter (CaCA) Family member PMID:11500563 | chr2:15996161-16000354 REVERSE | Aliases: F16M14.10, F16M14_10(evalue: 3e-06, score=48.9)">
      <seq>gaataatatagatttgtgtatctgaattcataaattcaaaaatataatattacgaaaccttaaaaattaaactcataaatttttaatttttaatccggtctctctttgcatagcatcattttgccatgtatatataaaaattacaccatatagaaagtatataatatatgttgcaaaatgaaccaaaattttggaagaaacaaattcttttttactaataatagaaacattggagttgtcaaatatgctccaaaacgaaagggcaatattttgtttattttgtccatatacatgaatgacatgataggttttatggtacaaaacaaaaattgagtatgtcatgctcaaattatagtttctcattttatttacatttctcatcgatattttgtatttgtctcgttaaatcttgattaacgtcagaaactatcacaaaatatcacattaaggtaaaaccttctctagctataacaaaggtaacttcatattcaggctcgaaattgacctctcgctttattatattcctatcatttttttctttttatattcttatattcctaatatctcttgcaggatggaacctcacattacatgaaagggattattctttgtcttgcctattgtgtcattggtgctttgtttctttttcataaaatccaatcaatattgaaaactattcatctgggatcatgtcatcttaaccaagttcattcagcaacgtgatgaaccatcagaaagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0144J05-LENke/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0144J05.1" temp_strand="+" temp_description="C06HBa0144J05.1  AC211053.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0144J05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="107297" stop="109062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107597" g_stop="108260" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108261" i_stop="108683" i_length="423">
            <donor d_prob="0.939" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108684" g_stop="108762" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="742" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0144J05.1" gen_strand="+" ref_id="SGN-U321997" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0144J05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107597" e_stop="108260"/>
          <exon e_start="108684" e_stop="108762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAATATAGATTTGTGTATCTGAATTCATAAATTCAAAAATATAATATTACGAAACCTTAAAAATTAAACTCATAAATTTTTAATTTTTAATCCGGTCTCTCTTTGCATAGCATCATTTTGCCATGTATATATAAAAATTACACCATATAGAAAGTATATAATATATGTTGCAAAATGAACCAAAATTTTGGAAGAAACAAATTCTTTTTTACTAATAATAGAAACATTGGAGTTGTCAAATATGCTCCAAAACGAAAGGGCAATATTTTGTTTATTTTGTCCATATACATGAATGACATGATAGGTTTTATGGTACAAAACAAAAATTGAGTATGTCATGCTCAAATTATAGTTTCTCATTTTATTTACATTTCTCATCGATATTTTGTATTTGTCTCGTTAAATCTTGATTAACGTCAGAAACTATCACAAAATATCACATTAAGGTAAAACCTTCTCTAGCTATAACAAAGGTAACTTCATATTCAGGCTCGAAATTGACCTCTCGCTTTATTATATTCCTATCATTTTTTTCTTTTTATATTCTTATATTCCTAATATCTCTTGCAGGATGGAACCTCACATTACATGAAAGGGATTATTCTTTGTCTTGCCTATTGTGTCATTGGTGC-TTGTTTCTTTTTCCATAAAATTCCAATCAGTAAGTCATTTTTATTTTTTGTTTTCTATACAAACCCTATTAATTATATTAAATAATATACTTATATACATCCTTTGAGAAAACATTTTACTTGTACACGCACAAGTAAACACTTAATTAAACTTGTATAAAACTAAATATATAGACACATTCGTCCAACATGACACTCTACATGATAATTTTGTATTCTACGTGGCGTCCTATATGTATTATGTCATGAAGGACACGTGTGTCTACTTGTTTAAAGTTGGAGGGCATAGCTGTCCGCTGAAGCCAAGTTACATGTTTATGTGTTATGCCTAAAGGCTAAAAGTTACATGTAACTATTTTTATACATGATTTACATTTTCAGTTTATGAAAGTTAAATGTTAAATCCTCTGACAAATTGCTAACTCTTGTTTTGGTGCGTCGGGTGTTGTTAGATATTGAAAACTATTCATCTGGGATCATGTCATCTTAACCAAGTTCATTCAGCAACGTGATGAACCATCAGAAAGAAAT</genome_strand>
        <mrna_strand>GAATAATATAGATTTGTGTATCTGAATTCATAAATTCAAAAATATAATATTACGAAACCTTAAAAATTAAACTCATAAATTTTTAATTTTTAATCCGGTCTCTCTTTGCATAGCATCATTTTGCCATGTATATATAAAAATTACACCATATAGAAAGTATATAATATATGTTGCAAAATGAACCAAAATTTTGGAAGAAACAAATTCTTTTTTACTAATAATAGAAACATTGGAGTTGTCAAATATGCTCCAAAACGAAAGGGCAATATTTTGTTTATTTTGTCCATATACATGAATGACATGATAGGTTTTATGGTACAAAACAAAAATTGAGTATGTCATGCTCAAATTATAGTTTCTCATTTTATTTACATTTCTCATCGATATTTTGTATTTGTCTCGTTAAATCTTGATTAACGTCAGAAACTATCACAAAATATCACATTAAGGTAAAACCTTCTCTAGCTATAACAAAGGTAACTTCATATTCAGGCTCGAAATTGACCTCTCGCTTTATTATATTCCTATCATTTTTTTCTTTTTATATTCTTATATTCCTAATATCTCTTGCAGGATGGAACCTCACATTACATGAAAGGGATTATTCTTTGTCTTGCCTATTGTGTCATTGGTGCTTTGTTTCTTTTT-CATAAAA-TCCAATCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGAAAACTATTCATCTGGGATCATGTCATCTTAACCAAGTTCATTCAGCAACGTGATGAACCATCAGAAAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>11</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="3910" PGL_stop="4397"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3910" e_stop="4397"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="3910" e_stop="4397" e_length="488"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3910" stop="4397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339744" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTGGAGATGGTGCAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAGTGTGACCCTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTGAACACTTTTCTCTAGTTTTTGCAACTTGATAAACACTTTTCAAGAACTCTTGCAAAGGCTAATACAAAGCAAAGGCAGAATCATTCCTAGGACAACAGCAATATCTGGAGCTTTTCGTCTAATTGTTTAGGAATTTATTCTCTTGTTCTTAAATTGTAAACCACTCCTAAATCTATAAAGGAATTGGTGTGTTGTGTTCAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTTCTACTTTGGCTTGTTGAGCAATAGAGGTCTATTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTTGCTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAA</gDNA_template>
            <first_frame> A  G  D  G  A  E  S  R  C  T  L  P  D  G  V  R  K  C  D  P  S  N  Q  W  Q  R  S  L  G  K  *  L  A  H  I  K  G  T  F  L  N  T  F  L  *  F  L  Q  L  D  K  H  F  S  R  T  L  A  K  A  N  T  K  Q  R  Q  N  H  S  *  D  N  S  N  I  W  S  F  S  S  N  C  L  G  I  Y  S  L  V  L  K  L  *  T  T  P  K  S  I  K  E  L  V  C  C  V  Q  S  L  G  C  P  G  G  I  A  *  W  V  D  C  F  S  T  L  A  C  *  A  I  E  V  Y  C  L  T  V  R  L  I  T  L  S  Y  V  W  C  N  R  V  L  L  L  L  L  K  I  S  E  N  D  *   </first_frame>
            <second_frame>  L  E  M  V  Q  K  V  G  A  H  F  P  M  A  S  E  S  V  T  L  P  T  N  G  K  E  V  *  E  S  D  L  P  I  *  K  A  L  S  *  T  L  F  S  S  F  C  N  L  I  N  T  F  Q  E  L  L  Q  R  L  I  Q  S  K  G  R  I  I  P  R  T  T  A  I  S  G  A  F  R  L  I  V  *  E  F  I  L  L  F  L  N  C  K  P  L  L  N  L  *  R  N  W  C  V  V  F  K  V  *  V  V  Q  V  G  *  L  S  G  *  I  V  F  L  L  W  L  V  E  Q  *  R  S  I  A  *  R  *  D  *  *  L  F  L  T  F  G  V  I  V  F  C  F  C  F  *  R  L  V  K  T  I  E  </second_frame>
            <third_frame>   W  R  W  C  R  K  *  V  H  T  S  R  W  R  Q  K  V  *  P  F  Q  P  M  A  K  K  F  R  K  V  T  C  P  Y  K  R  H  F  P  E  H  F  S  L  V  F  A  T  *  *  T  L  F  K  N  S  C  K  G  *  Y  K  A  K  A  E  S  F  L  G  Q  Q  Q  Y  L  E  L  F  V  *  L  F  R  N  L  F  S  C  S  *  I  V  N  H  S  *  I  Y  K  G  I  G  V  L  C  S  K  S  R  L  S  R  W  D  S  L  V  G  R  L  F  F  Y  F  G  L  L  S  N  R  G  L  L  L  N  G  K  I  D  N  S  F  L  R  L  V  *  S  C  F  A  F  A  F  E  D  *  *  K  R  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0144J05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="27094" PGL_stop="26287"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27094" e_stop="26287"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="27094" e_stop="26287" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27094" stop="26287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345812" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTACAAAAGGTTTGACAGCTATATGGCGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAAGGATGATTCGTTCATCTATCTGGTGCTTTATGTAGATGATATGCTGATAGCTGCAAAGAAGAAGTATGACATTCATAAGCTGAAGGGTTTACTTAGTGCGGAGTTTGAGATGAAGGATCTGGGAGCTGCTCGGAAGATTCTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCTATTGATAACCCTAGTGCTGCCAATATCCACCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGTCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGTAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  T  K  G  L  T  A  I  W  R  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  R  M  I  R  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  I  S  *  R  V  Y  L  V  R  S  L  R  *  R  I  W  E  L  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  L  L  I  T  L  V  L  P  I  S  T  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  S  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  *  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  Q  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  G  *  F  V  H  L  S  G  A  L  C  R  *  Y  A  D  S  C  K  E  E  V  *  H  S  *  A  E  G  F  T  *  C  G  V  *  D  E  G  S  G  S  C  S  E  D  S  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  Y  *  *  P  *  C  C  Q  Y  P  P  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  A  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  K  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  H  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  N  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  V  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  V  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0144J05.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27092" stop="26289"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMAKLGYTRSSYDCCVYYNRLKDDSFIYLVLYVDDMLIAAKKKYDIHKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDNPSAANIHLTAMFAPQSEEEKEYMSRVPYASVVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKVT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="27753" PGL_stop="27105"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27753" e_stop="27105"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="27753" e_stop="27105" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27753" stop="27105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330105" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTGTGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATGCATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATATAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTACACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  R  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  C  I  *  A  V  Y  L  Q  R  S  H  F  K  S  *  F  *  K  M  V  C  C  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  Y  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  Y  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  C  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  A  S  E  P  S  T  Y  K  E  A  I  L  S  P  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  I  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  T  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  Q  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  V  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  M  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  L  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  *  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0144J05.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27752" stop="27105"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRCGFEDMVGYALQVAEEVDASEPSTYKEAILSPDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYIARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVTHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="41673" PGL_stop="42289"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41673" e_stop="42289"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="41673" e_stop="42289" e_length="617"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41673" stop="42289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345275" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAACTTGTGGGGGAATAATTTTGTCAGCGATTCAACATTGAGCTTCCTTGAATCATTGACAAACTGTAGGAATCTAAGAGTACTCACGCTTGGTGGTAATCCGTTGGATGGTGTTTTGCCTGCATCTGTTGGTAATTTCTCAAACTCCTTGCAAATTTTTGAAGCATCTAAATGTAAACTGAAGGGTGTCATTTCAAAACAAATTACTAATCTTACTGGATTGACAAGGATGAGTCTGTCGAACAATCAGTTGATAGGTCATATTCCAAAAACAGTGCAAGGAATGCTGAACCTTCAAGAACTTTACCTAGGAAGCAACAAGTTAGAAGGAGCCATACCAGATGTTATCTGCAGTTTACAGTATCTTGGTGCATTAGAATTGTCAGAAAATCAATTTTCTAGTTCCGTTCCACCATGCTTAGGGAATGTTACTAGTTTGAGGACACTCTATCTAGATAACAACAAGCTGGATTCTAGATTACCTGCAAGATTGGGGGGACTTCAAAACATCATAGAGTTCAATATTTCATCCAATTATTTGAGTGGAGAAATTCCGCTAGAGAGCGGAAACTTGAAGGGTGCAACACTGATTGATCTGTCAAATAATTATTTTTCT</gDNA_template>
            <first_frame> S  T  C  G  G  I  I  L  S  A  I  Q  H  *  A  S  L  N  H  *  Q  T  V  G  I  *  E  Y  S  R  L  V  V  I  R  W  M  V  F  C  L  H  L  L  V  I  S  Q  T  P  C  K  F  L  K  H  L  N  V  N  *  R  V  S  F  Q  N  K  L  L  I  L  L  D  *  Q  G  *  V  C  R  T  I  S  *  *  V  I  F  Q  K  Q  C  K  E  C  *  T  F  K  N  F  T  *  E  A  T  S  *  K  E  P  Y  Q  M  L  S  A  V  Y  S  I  L  V  H  *  N  C  Q  K  I  N  F  L  V  P  F  H  H  A  *  G  M  L  L  V  *  G  H  S  I  *  I  T  T  S  W  I  L  D  Y  L  Q  D  W  G  D  F  K  T  S  *  S  S  I  F  H  P  I  I  *  V  E  K  F  R  *  R  A  E  T  *  R  V  Q  H  *  L  I  C  Q  I  I  I  F   </first_frame>
            <second_frame>  Q  L  V  G  E  *  F  C  Q  R  F  N  I  E  L  P  *  I  I  D  K  L  *  E  S  K  S  T  H  A  W  W  *  S  V  G  W  C  F  A  C  I  C  W  *  F  L  K  L  L  A  N  F  *  S  I  *  M  *  T  E  G  C  H  F  K  T  N  Y  *  S  Y  W  I  D  K  D  E  S  V  E  Q  S  V  D  R  S  Y  S  K  N  S  A  R  N  A  E  P  S  R  T  L  P  R  K  Q  Q  V  R  R  S  H  T  R  C  Y  L  Q  F  T  V  S  W  C  I  R  I  V  R  K  S  I  F  *  F  R  S  T  M  L  R  E  C  Y  *  F  E  D  T  L  S  R  *  Q  Q  A  G  F  *  I  T  C  K  I  G  G  T  S  K  H  H  R  V  Q  Y  F  I  Q  L  F  E  W  R  N  S  A  R  E  R  K  L  E  G  C  N  T  D  *  S  V  K  *  L  F  F  </second_frame>
            <third_frame>   N  L  W  G  N  N  F  V  S  D  S  T  L  S  F  L  E  S  L  T  N  C  R  N  L  R  V  L  T  L  G  G  N  P  L  D  G  V  L  P  A  S  V  G  N  F  S  N  S  L  Q  I  F  E  A  S  K  C  K  L  K  G  V  I  S  K  Q  I  T  N  L  T  G  L  T  R  M  S  L  S  N  N  Q  L  I  G  H  I  P  K  T  V  Q  G  M  L  N  L  Q  E  L  Y  L  G  S  N  K  L  E  G  A  I  P  D  V  I  C  S  L  Q  Y  L  G  A  L  E  L  S  E  N  Q  F  S  S  S  V  P  P  C  L  G  N  V  T  S  L  R  T  L  Y  L  D  N  N  K  L  D  S  R  L  P  A  R  L  G  G  L  Q  N  I  I  E  F  N  I  S  S  N  Y  L  S  G  E  I  P  L  E  S  G  N  L  K  G  A  T  L  I  D  L  S  N  N  Y  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0144J05.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41675" stop="42289"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLWGNNFVSDSTLSFLESLTNCRNLRVLTLGGNPLDGVLPASVGNFSNSLQIFEASKCKLKGVISKQITNLTGLTRMSLSNNQLIGHIPKTVQGMLNLQELYLGSNKLEGAIPDVICSLQYLGALELSENQFSSSVPPCLGNVTSLRTLYLDNNKLDSRLPARLGGLQNIIEFNISSNYLSGEIPLESGNLKGATLIDLSNNYFS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="49086" PGL_stop="48628"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49086" e_stop="48628"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="49086" e_stop="48628" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49086" stop="48628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACACAGTAAAAAAATAGTTTAATTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAATGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACATTGAACTTTGATAGAAGAATCATATATATCTCTAAATAATTTTTTTTAAAAAAAATTAAAAGTAATAAATATAAATTTAAAATAAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGTCATTTTATAACAGCAGGGGTAAATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGCCACTTTTATAACGAGGGGTATATGAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCTTTTTCCCTTTTATATATAACTATAA</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  L  R  I  R  N  *  I  T  I  H  S  K  K  I  V  *  F  F  Y  L  N  *  G  M  K  E  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  *  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  I  S  K  *  F  F  L  K  K  I  K  S  N  K  Y  K  F  K  I  N  F  L  T  S  V  K  *  R  V  Y  V  S  H  F  I  T  A  G  V  N  V  S  R  L  Y  N  G  K  G  I  Y  E  P  L  L  *  R  G  V  Y  E  L  Q  M  T  K  L  R  G  I  S  D  L  F  P  F  Y  I  *  L  * </first_frame>
            <second_frame>  Y  C  R  *  P  N  F  F  F  E  Y  E  I  K  L  Q  Y  T  V  K  K  *  F  N  F  F  I  *  T  K  E  *  K  K  K  T  K  *  E  *  E  T  Q  I  I  I  I  N  E  V  K  K  *  F  M  Y  E  K  N  *  N  I  H  *  T  L  I  E  E  S  Y  I  S  L  N  N  F  F  *  K  K  L  K  V  I  N  I  N  L  K  *  I  F  *  L  P  L  N  E  G  Y  M  *  V  I  L  *  Q  Q  G  *  M  *  A  V  C  I  T  V  R  A  Y  M  S  H  F  Y  N  E  G  Y  M  S  S  K  *  Q  S  *  G  V  Y  Q  T  F  F  P  F  I  Y  N  Y   </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  S  S  N  T  K  L  N  Y  N  T  Q  *  K  N  S  L  I  F  L  F  K  L  R  N  E  R  K  K  Q  N  K  N  K  K  L  K  *  L  *  *  M  K  S  K  N  N  L  C  M  K  K  I  K  I  Y  I  E  L  *  *  K  N  H  I  Y  L  *  I  I  F  F  K  K  N  *  K  *  *  I  *  I  *  N  K  F  F  N  F  R  *  M  K  G  I  C  E  S  F  Y  N  S  R  G  K  C  E  P  F  V  *  R  *  G  H  I  *  A  T  F  I  T  R  G  I  *  A  P  N  D  K  V  E  G  Y  I  R  P  F  S  L  L  Y  I  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0144J05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="65452" PGL_stop="72785"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65452" e_stop="65696"/>
            <exon e_start="66982" e_stop="67166"/>
            <exon e_start="67566" e_stop="67755"/>
            <exon e_start="68732" e_stop="68883"/>
            <exon e_start="69555" e_stop="69670"/>
            <exon e_start="69764" e_stop="70010"/>
            <exon e_start="70089" e_stop="70145"/>
            <exon e_start="70279" e_stop="70431"/>
            <exon e_start="71153" e_stop="71233"/>
            <exon e_start="71512" e_stop="71598"/>
            <exon e_start="72077" e_stop="72785"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.998" e_score="0.971"/>
          <exon-intron don_prob="0.950" acc_prob="0.992" e_score="0.995"/>
          <exon-intron don_prob="0.949" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.625" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.885" e_score="0.991"/>
          <exon-intron don_prob="0.996" acc_prob="0.612" e_score="0.996"/>
          <exon-intron don_prob="0.993" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="65452" e_stop="65696" e_length="245"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.998">
            <gDNA_intron_boundary i_start="65697" i_stop="66981" i_length="1285"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="66982" e_stop="67166" e_length="185"/>
          </exon>
          <intron i_serial="2" don_prob="0.950" acc_prob="0.992">
            <gDNA_intron_boundary i_start="67167" i_stop="67565" i_length="399"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67566" e_stop="67755" e_length="190"/>
          </exon>
          <intron i_serial="3" don_prob="0.949" acc_prob="0.968">
            <gDNA_intron_boundary i_start="67756" i_stop="68731" i_length="976"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="68732" e_stop="68883" e_length="152"/>
          </exon>
          <intron i_serial="4" don_prob="0.950" acc_prob="0.625">
            <gDNA_intron_boundary i_start="68884" i_stop="69554" i_length="671"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="69555" e_stop="69670" e_length="116"/>
          </exon>
          <intron i_serial="5" don_prob="0.972" acc_prob="0.885">
            <gDNA_intron_boundary i_start="69671" i_stop="69763" i_length="93"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="69764" e_stop="70010" e_length="247"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.612">
            <gDNA_intron_boundary i_start="70011" i_stop="70088" i_length="78"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="70089" e_stop="70145" e_length="57"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.942">
            <gDNA_intron_boundary i_start="70146" i_stop="70278" i_length="133"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="70279" e_stop="70431" e_length="153"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="70432" i_stop="71152" i_length="721"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="71153" e_stop="71233" e_length="81"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="71234" i_stop="71511" i_length="278"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="71512" e_stop="71598" e_length="87"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="71599" i_stop="72076" i_length="478"/>
          </intron>
          <exon e_serial="11" e_score="0.997">
            <gDNA_exon_boundary e_start="72077" e_stop="72785" e_length="709"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65452" stop="65696"/>
              <exon start="66982" stop="67166"/>
              <exon start="67566" stop="67755"/>
              <exon start="68732" stop="68845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67611" stop="67755"/>
              <exon start="68732" stop="68883"/>
              <exon start="69555" stop="69670"/>
              <exon start="69764" stop="70010"/>
              <exon start="70089" stop="70145"/>
              <exon start="70279" stop="70431"/>
              <exon start="71153" stop="71233"/>
              <exon start="71512" stop="71598"/>
              <exon start="72077" stop="72785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321505" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTCTGCAACATATAACCGTCAAATTCCATTTCTTTCACCATTTTTTCAAAGCTCAAATGCTGTAAACACTCATGAAAACCCTAGCCGTATCTCATCACCGACCGGTTATCTCCGGCACCGGTCACCGCTCCTCCATTTTCTCCGGTCACAGGGCTACTTCGCTCTCTTTCTCTAGGTCCCCTGTATCGGCTGCTCGACTTCGGATTCTCAAATGCTCCGCTGCTATTTCTCCTCCTTCATTAG : TGGACGACTCAGTGAAGTTCAAGGAGGCTGCCAAGCATGGGAATTTGATCCCCCTCTACAGGTCTATATTCTCCGATCACTTAACTCCGGTCCTTGCTTACCGCTGTCTAGTGAAGGAAGATGATAGGGAAGCTCCGAGCTTCTTGTTCGAGTCTGTAGAGCCTGGTTTGAAAGCTTCTAATGTT : GGTCGATACAGTGTGATTGGGGCCCAGCCAACAATGGAAATTGTTGCAAAAGAGAACATGGTGACAATTATGGATCACCTTGAAGGAAGCAGAACAGAGGAATTTGAGGAAGATCCAATGAGCATTCCTCGTAGGATTATGGAAAAATGGAAACCTCAATGCATAAATGAGCTTCCTGAAGCATTTTGTG : GAGGTTGGGTTGGTTTCTTCTCATATGATACTGTGCGTTACGTAGAGAAAAAGAAGCTACCTTTCTCAAATGCTCCAATGGATGATAGGAACCTTCCTGATCTTCATCTAGGACTTTATGATGATGTAATTGTGTTTGATCATGTGGAAAAG : AAAGCATTTGTCATACATTGGGTGCGGTTAGATCGCTTTGCTTCAGTAGAGGAGGCCTACAATGATGGTACAACCAGATTAGAAGCTTTGTTGTCTAGAGTACATGATATTGTACC : TCCTACACTGGCTTCAGGGTCGATAAAACTTCATACTAGTCTATTTGGTACTTCATTGAAAAATTCAACCATGACAAGCGAAGACTACCAGAAGGCTGTTTTAAAGGCCAAGGAACATATCCTTGCTGGGGACATTTTCCAAATTGTTCTTAGTCAACGTTTTGAAAGACGAACCTTTGCAGATCCATTTGAAGTATACAGAGCACTAAGAATCGTAAATCCAAGTCCTTATATGACTTATCTACAG : GCTCGGGGGTGTATACTTGTTGCTTCTAGTCCTGAAATTCTTACTCGAGTGAAGAAG : AAAACAGTTACCAATCGGCCCCTAGCAGGGACTATTAGAAGAGGTAAGACACTTGAGGAAGATTATATGCTGGAAAATCAACTTTTGCACGACGAGAAACAGTGTGCAGAGCATATAATGCTGGTTGACTTGGGAAGAAATGATGTTGGAAAG : GTCTCTAAGCCTGGTTCGGTGAAAGTTGAGAAACTAATGAACATTGAACGGTATTCCCATGTCATGCACATCAGCTCTACG : GTTACTGGAGAGCTACTTGACCATTTGAGTAGCTGGGATGCTCTGCGTGCAGCCCTGCCTGTTGGAACCGTTAGTGGAGCGCCTAAG : GTAAAAGCCATGGAGCTAATTGATCAACTGGAAGTCACAAGGCGTGGACCATACAGCGGTGGATTTGGAGGAATTTCCTTTACCGGAGAAATGGACATTGCCTTAGCTTTGAGAACCATAGTATTTCCAACTGGAACGCGTTACGACACTATGTACTCGTACAAGGATGTCGACAAGCGACGAGATTGGATTGCTTATCTCCAAGCTGGAGCAGGTATAGTGGCTGATAGTGACCCAGCTGATGAGCAAAATGAATGCGAAAATAAAGCTGCAGCTCTTGTCCGTGCCATTGATCTTGCTGAGTCTTCATTTGTTGACAAATAATAGATGCCGTCCTAGTGTCAGATTTTGTTTCGTCGATTATTTCGTTTCTTGTTGGATGTAGAAAGTTCGTTTTCAATCTGAATAGTCCGTTATGTTGGGAGGTGACTGAAAATCCCCATCCACACACACACTCACAATGTCATAGTCATTGCGTATGTTGGCTTCATCAATTTTAGCAGGGTGTCACAAAGAGCCCAGAATTGGCATTGTGACTTATAGTTCTCTGGCTGTCAATTGATTTCAGTATTTGGCTTTTTTCGGGTTCTGTGGTTGTACCCTAGGGCTATCAGAAACCTAACCTCTCTACTTTTGTAGGATAATATTAGTTTGCATCCTGCCCTCTCCAGACTCAACTTATGGCATTGTACTCTAAATTATGATCTTG</gDNA_template>
            <first_frame> T  S  A  T  Y  N  R  Q  I  P  F  L  S  P  F  F  Q  S  S  N  A  V  N  T  H  E  N  P  S  R  I  S  S  P  T  G  Y  L  R  H  R  S  P  L  L  H  F  L  R  S  Q  G  Y  F  A  L  F  L  *  V  P  C  I  G  C  S  T  S  D  S  Q  M  L  R  C  Y  F  S  S  F  I  S :   G  R  L  S  E  V  Q  G  G  C  Q  A  W  E  F  D  P  P  L  Q  V  Y  I  L  R  S  L  N  S  G  P  C  L  P  L  S  S  E  G  R  *  *  G  S  S  E  L  L  V  R  V  C  R  A  W  F  E  S  F  *  C   : W  S  I  Q  C  D  W  G  P  A  N  N  G  N  C  C  K  R  E  H  G  D  N  Y  G  S  P  *  R  K  Q  N  R  G  I  *  G  R  S  N  E  H  S  S  *  D  Y  G  K  M  E  T  S  M  H  K  *  A  S  *  S  I  L  W :   R  L  G  W  F  L  L  I  *  Y  C  A  L  R  R  E  K  E  A  T  F  L  K  C  S  N  G  *  *  E  P  S  *  S  S  S  R  T  L  *  *  C  N  C  V  *  S  C  G  K   : E  S  I  C  H  T  L  G  A  V  R  S  L  C  F  S  R  G  G  L  Q  *  W  Y  N  Q  I  R  S  F  V  V  *  S  T  *  Y  C  T  :  S  Y  T  G  F  R  V  D  K  T  S  Y  *  S  I  W  Y  F  I  E  K  F  N  H  D  K  R  R  L  P  E  G  C  F  K  G  Q  G  T  Y  P  C  W  G  H  F  P  N  C  S  *  S  T  F  *  K  T  N  L  C  R  S  I  *  S  I  Q  S  T  K  N  R  K  S  K  S  L  Y  D  L  S  T   : G  S  G  V  Y  T  C  C  F  *  S  *  N  S  Y  S  S  E  E   : E  N  S  Y  Q  S  A  P  S  R  D  Y  *  K  R  *  D  T  *  G  R  L  Y  A  G  K  S  T  F  A  R  R  E  T  V  C  R  A  Y  N  A  G  *  L  G  K  K  *  C  W  K   : G  L  *  A  W  F  G  E  S  *  E  T  N  E  H  *  T  V  F  P  C  H  A  H  Q  L  Y   : G  Y  W  R  A  T  *  P  F  E  *  L  G  C  S  A  C  S  P  A  C  W  N  R  *  W  S  A  *   : G  K  S  H  G  A  N  *  S  T  G  S  H  K  A  W  T  I  Q  R  W  I  W  R  N  F  L  Y  R  R  N  G  H  C  L  S  F  E  N  H  S  I  S  N  W  N  A  L  R  H  Y  V  L  V  Q  G  C  R  Q  A  T  R  L  D  C  L  S  P  S  W  S  R  Y  S  G  *  *  *  P  S  *  *  A  K  *  M  R  K  *  S  C  S  S  C  P  C  H  *  S  C  *  V  F  I  C  *  Q  I  I  D  A  V  L  V  S  D  F  V  S  S  I  I  S  F  L  V  G  C  R  K  F  V  F  N  L  N  S  P  L  C  W  E  V  T  E  N  P  H  P  H  T  H  S  Q  C  H  S  H  C  V  C  W  L  H  Q  F  *  Q  G  V  T  K  S  P  E  L  A  L  *  L  I  V  L  W  L  S  I  D  F  S  I  W  L  F  S  G  S  V  V  V  P  *  G  Y  Q  K  P  N  L  S  T  F  V  G  *  Y  *  F  A  S  C  P  L  Q  T  Q  L  M  A  L  Y  S  K  L  *  S   </first_frame>
            <second_frame>  P  L  Q  H  I  T  V  K  F  H  F  F  H  H  F  F  K  A  Q  M  L  *  T  L  M  K  T  L  A  V  S  H  H  R  P  V  I  S  G  T  G  H  R  S  S  I  F  S  G  H  R  A  T  S  L  S  F  S  R  S  P  V  S  A  A  R  L  R  I  L  K  C  S  A  A  I  S  P  P  S  L   : V  D  D  S  V  K  F  K  E  A  A  K  H  G  N  L  I  P  L  Y  R  S  I  F  S  D  H  L  T  P  V  L  A  Y  R  C  L  V  K  E  D  D  R  E  A  P  S  F  L  F  E  S  V  E  P  G  L  K  A  S  N  V  :  G  R  Y  S  V  I  G  A  Q  P  T  M  E  I  V  A  K  E  N  M  V  T  I  M  D  H  L  E  G  S  R  T  E  E  F  E  E  D  P  M  S  I  P  R  R  I  M  E  K  W  K  P  Q  C  I  N  E  L  P  E  A  F  C   : G  G  W  V  G  F  F  S  Y  D  T  V  R  Y  V  E  K  K  K  L  P  F  S  N  A  P  M  D  D  R  N  L  P  D  L  H  L  G  L  Y  D  D  V  I  V  F  D  H  V  E  K  :  K  A  F  V  I  H  W  V  R  L  D  R  F  A  S  V  E  E  A  Y  N  D  G  T  T  R  L  E  A  L  L  S  R  V  H  D  I  V  P :   P  T  L  A  S  G  S  I  K  L  H  T  S  L  F  G  T  S  L  K  N  S  T  M  T  S  E  D  Y  Q  K  A  V  L  K  A  K  E  H  I  L  A  G  D  I  F  Q  I  V  L  S  Q  R  F  E  R  R  T  F  A  D  P  F  E  V  Y  R  A  L  R  I  V  N  P  S  P  Y  M  T  Y  L  Q  :  A  R  G  C  I  L  V  A  S  S  P  E  I  L  T  R  V  K  K  :  K  T  V  T  N  R  P  L  A  G  T  I  R  R  G  K  T  L  E  E  D  Y  M  L  E  N  Q  L  L  H  D  E  K  Q  C  A  E  H  I  M  L  V  D  L  G  R  N  D  V  G  K  :  V  S  K  P  G  S  V  K  V  E  K  L  M  N  I  E  R  Y  S  H  V  M  H  I  S  S  T  :  V  T  G  E  L  L  D  H  L  S  S  W  D  A  L  R  A  A  L  P  V  G  T  V  S  G  A  P  K  :  V  K  A  M  E  L  I  D  Q  L  E  V  T  R  R  G  P  Y  S  G  G  F  G  G  I  S  F  T  G  E  M  D  I  A  L  A  L  R  T  I  V  F  P  T  G  T  R  Y  D  T  M  Y  S  Y  K  D  V  D  K  R  R  D  W  I  A  Y  L  Q  A  G  A  G  I  V  A  D  S  D  P  A  D  E  Q  N  E  C  E  N  K  A  A  A  L  V  R  A  I  D  L  A  E  S  S  F  V  D  K  *  *  M  P  S  *  C  Q  I  L  F  R  R  L  F  R  F  L  L  D  V  E  S  S  F  S  I  *  I  V  R  Y  V  G  R  *  L  K  I  P  I  H  T  H  T  H  N  V  I  V  I  A  Y  V  G  F  I  N  F  S  R  V  S  Q  R  A  Q  N  W  H  C  D  L  *  F  S  G  C  Q  L  I  S  V  F  G  F  F  R  V  L  W  L  Y  P  R  A  I  R  N  L  T  S  L  L  L  *  D  N  I  S  L  H  P  A  L  S  R  L  N  L  W  H  C  T  L  N  Y  D  L  </second_frame>
            <third_frame>   L  C  N  I  *  P  S  N  S  I  S  F  T  I  F  S  K  L  K  C  C  K  H  S  *  K  P  *  P  Y  L  I  T  D  R  L  S  P  A  P  V  T  A  P  P  F  S  P  V  T  G  L  L  R  S  L  S  L  G  P  L  Y  R  L  L  D  F  G  F  S  N  A  P  L  L  F  L  L  L  H  *  :  W  T  T  Q  *  S  S  R  R  L  P  S  M  G  I  *  S  P  S  T  G  L  Y  S  P  I  T  *  L  R  S  L  L  T  A  V  *  *  R  K  M  I  G  K  L  R  A  S  C  S  S  L  *  S  L  V  *  K  L  L  M  L :   V  D  T  V  *  L  G  P  S  Q  Q  W  K  L  L  Q  K  R  T  W  *  Q  L  W  I  T  L  K  E  A  E  Q  R  N  L  R  K  I  Q  *  A  F  L  V  G  L  W  K  N  G  N  L  N  A  *  M  S  F  L  K  H  F  V  :  E  V  G  L  V  S  S  H  M  I  L  C  V  T  *  R  K  R  S  Y  L  S  Q  M  L  Q  W  M  I  G  T  F  L  I  F  I  *  D  F  M  M  M  *  L  C  L  I  M  W  K  R :   K  H  L  S  Y  I  G  C  G  *  I  A  L  L  Q  *  R  R  P  T  M  M  V  Q  P  D  *  K  L  C  C  L  E  Y  M  I  L  Y   : L  L  H  W  L  Q  G  R  *  N  F  I  L  V  Y  L  V  L  H  *  K  I  Q  P  *  Q  A  K  T  T  R  R  L  F  *  R  P  R  N  I  S  L  L  G  T  F  S  K  L  F  L  V  N  V  L  K  D  E  P  L  Q  I  H  L  K  Y  T  E  H  *  E  S  *  I  Q  V  L  I  *  L  I  Y  R :   L  G  G  V  Y  L  L  L  L  V  L  K  F  L  L  E  *  R  R :   K  Q  L  P  I  G  P  *  Q  G  L  L  E  E  V  R  H  L  R  K  I  I  C  W  K  I  N  F  C  T  T  R  N  S  V  Q  S  I  *  C  W  L  T  W  E  E  M  M  L  E  R :   S  L  S  L  V  R  *  K  L  R  N  *  *  T  L  N  G  I  P  M  S  C  T  S  A  L  R :   L  L  E  S  Y  L  T  I  *  V  A  G  M  L  C  V  Q  P  C  L  L  E  P  L  V  E  R  L  R :   *  K  P  W  S  *  L  I  N  W  K  S  Q  G  V  D  H  T  A  V  D  L  E  E  F  P  L  P  E  K  W  T  L  P  *  L  *  E  P  *  Y  F  Q  L  E  R  V  T  T  L  C  T  R  T  R  M  S  T  S  D  E  I  G  L  L  I  S  K  L  E  Q  V  *  W  L  I  V  T  Q  L  M  S  K  M  N  A  K  I  K  L  Q  L  L  S  V  P  L  I  L  L  S  L  H  L  L  T  N  N  R  C  R  P  S  V  R  F  C  F  V  D  Y  F  V  S  C  W  M  *  K  V  R  F  Q  S  E  *  S  V  M  L  G  G  D  *  K  S  P  S  T  H  T  L  T  M  S  *  S  L  R  M  L  A  S  S  I  L  A  G  C  H  K  E  P  R  I  G  I  V  T  Y  S  S  L  A  V  N  *  F  Q  Y  L  A  F  F  G  F  C  G  C  T  L  G  L  S  E  T  *  P  L  Y  F  C  R  I  I  L  V  C  I  L  P  S  P  D  S  T  Y  G  I  V  L  *  I  M  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0144J05.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65519" stop="65696"/>
                    <exon start="66982" stop="67166"/>
                    <exon start="67566" stop="67755"/>
                    <exon start="68732" stop="68883"/>
                    <exon start="69555" stop="69670"/>
                    <exon start="69764" stop="70010"/>
                    <exon start="70089" stop="70145"/>
                    <exon start="70279" stop="70431"/>
                    <exon start="71153" stop="71233"/>
                    <exon start="71512" stop="71598"/>
                    <exon start="72077" stop="72400"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1767</number_coding_nucleotides>
                  <number_encoded_amino_acids>589</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLMKTLAVSHHRPVISGTGHRSSIFSGHRATSLSFSRSPVSAARLRILKCSAAISPPSLVDDSVKFKEAAKHGNLIPLYRSIFSDHLTPVLAYRCLVKEDDREAPSFLFESVEPGLKASNVGRYSVIGAQPTMEIVAKENMVTIMDHLEGSRTEEFEEDPMSIPRRIMEKWKPQCINELPEAFCGGWVGFFSYDTVRYVEKKKLPFSNAPMDDRNLPDLHLGLYDDVIVFDHVEKKAFVIHWVRLDRFASVEEAYNDGTTRLEALLSRVHDIVPPTLASGSIKLHTSLFGTSLKNSTMTSEDYQKAVLKAKEHILAGDIFQIVLSQRFERRTFADPFEVYRALRIVNPSPYMTYLQARGCILVASSPEILTRVKKKTVTNRPLAGTIRRGKTLEEDYMLENQLLHDEKQCAEHIMLVDLGRNDVGKVSKPGSVKVEKLMNIERYSHVMHISSTVTGELLDHLSSWDALRAALPVGTVSGAPKVKAMELIDQLEVTRRGPYSGGFGGISFTGEMDIALALRTIVFPTGTRYDTMYSYKDVDKRRDWIAYLQAGAGIVADSDPADEQNECENKAAALVRAIDLAESSFVDK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="77270" PGL_stop="80942"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77270" e_stop="77302"/>
            <exon e_start="78828" e_stop="79149"/>
            <exon e_start="79394" e_stop="79521"/>
            <exon e_start="80158" e_stop="80942"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.977" e_score="0.909"/>
          <exon-intron don_prob="0.876" acc_prob="0.953" e_score="0.997"/>
          <exon-intron don_prob="0.509" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="77270" e_stop="77302" e_length="33"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.977">
            <gDNA_intron_boundary i_start="77303" i_stop="78827" i_length="1525"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="78828" e_stop="79149" e_length="322"/>
          </exon>
          <intron i_serial="2" don_prob="0.876" acc_prob="0.953">
            <gDNA_intron_boundary i_start="79150" i_stop="79393" i_length="244"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79394" e_stop="79521" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.509" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79522" i_stop="80157" i_length="636"/>
          </intron>
          <exon e_serial="4" e_score="0.999">
            <gDNA_exon_boundary e_start="80158" e_stop="80942" e_length="785"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77270" stop="77302"/>
              <exon start="78828" stop="79149"/>
              <exon start="79394" stop="79521"/>
              <exon start="80158" stop="80942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322176" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATCATTTACAGCTCTAATTCATTTGCTTCAG : ACGTTGATTGGAAGATGGCGTCTGTCCAAACTGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATAATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCGGTTACAGGGAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAGAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAG : TGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTG : GACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGGAACTCTGCTGTTGTAAGCTCGATTGAAGAAGAAGTTCACAAGCTTCAATGGGCAACAATGTGGGGTGCAGATACGATTATGGATCTCTCTACTGGTCGTCACATCCACGAGACTCGTGAGTGGATCTTGCGTAATTCTGCTGTACCAGTAGGCACTGTGCCAATTTACCAAGCACTAGAAAAAGTAAACGGGATTGCTGAGAATCTTAGTTGGGAAGTGTTTAGGGAGACCTTAATTGAACAAGCTGAGCAAGGAGTTGATTACTTCACAATCCATGCCGGAGTCCTTCTCAGGTACATCCCACTGACAGCAAAACGGATGACCGGAATTGTTTCTCGTGGAGGCTCAATTCATGCAAAGTGGTGCTTAGCTTATCACAAGGAGAATTTCGCTTATGAACATTGGGATGACATACTTGACATCTGTAATCAGTACGATATATCGTTATCAATTGGTGATGGACTGAGACCTGGTTCAATTTATGATGCAAATGACACCGCTCAGTTTGCTGAGCTCTTGACT</gDNA_template>
            <first_frame> S  S  F  T  A  L  I  H  L  L  Q  :  T  L  I  G  R  W  R  L  S  K  L  L  *  H  H  S  Y  A  R  K  G  T  I  I  H  K  *  M  F  Q  E  V  P  S  C  Q  G  L  I  *  Q  G  K  L  R  L  Q  G  E  G  K  R  V  S  I  L  F  Q  A  R  E  Q  H  L  P  L  I  L  P  V  L  I  I  K  R  R  Q  S  Q  S  T  L  L  I  L  M  L  L  I  S  C  P  F  H  H  S  N  N  A  F  R  K  A  P  R  N  T   : V  K  L  C  M  K  K  L  V  M  Y  S  K  S  H  F  D  V  S  I  F  P  G  M  N  H  I  S  T  L  M  I  P  V  V  L  R  V  L  T  R  A  L  :  D  F  P  S  C  A  R  S  G  L  T  G  G  R  S  *  E  D  Q  G  I  L  K  C  S  M  L  S  R  E  S  *  L  R  K  W  C  T  V  L  L  V  R  R  W  I  R  N  L  *  G  Q  K  L  L  G  A  V  Q  S  S  L  Q  T  R  S  T  L  S  W  S  Q  *  *  *  E  E  S  S  *  *  K  S  M  P  T  S  G  T  L  L  L  *  A  R  L  K  K  K  F  T  S  F  N  G  Q  Q  C  G  V  Q  I  R  L  W  I  S  L  L  V  V  T  S  T  R  L  V  S  G  S  C  V  I  L  L  Y  Q  *  A  L  C  Q  F  T  K  H  *  K  K  *  T  G  L  L  R  I  L  V  G  K  C  L  G  R  P  *  L  N  K  L  S  K  E  L  I  T  S  Q  S  M  P  E  S  F  S  G  T  S  H  *  Q  Q  N  G  *  P  E  L  F  L  V  E  A  Q  F  M  Q  S  G  A  *  L  I  T  R  R  I  S  L  M  N  I  G  M  T  Y  L  T  S  V  I  S  T  I  Y  R  Y  Q  L  V  M  D  *  D  L  V  Q  F  M  M  Q  M  T  P  L  S  L  L  S  S  *   </first_frame>
            <second_frame>  H  H  L  Q  L  *  F  I  C  F  R :   R  *  L  E  D  G  V  C  P  N  C  F  D  I  T  P  M  Q  E  R  E  Q  *  S  T  S  K  C  S  K  K  F  L  L  A  R  V  *  F  D  R  A  S  C  G  Y  R  E  K  G  N  A  F  Q  F  F  F  K  P  E  S  N  T  Y  L  *  S  S  Q  Y  *  *  *  R  E  D  K  A  K  A  H  C  *  S  *  C  S  *  F  P  A  P  S  T  I  R  T  M  L  S  E  K  L  Q  G  I  Q  :  *  S  Y  A  *  R  N  W  S  C  T  Q  S  P  I  S  T  Y  P  S  F  R  G  *  T  T  F  R  H  L  *  Y  Q  W  S  S  G  C  *  P  A  R  W :   T  S  Q  A  A  H  G  V  D  *  Q  E  G  E  V  R  R  T  K  V  Y  S  N  V  L  C  *  A  G  N  H  N  *  G  N  G  V  L  C  C  S  *  E  D  G  S  G  I  C  E  V  R  S  C  S  G  P  C  N  H  P  F  K  Q  E  A  P  *  V  G  A  N  D  S  R  K  K  V  L  S  E  S  Q  C  Q  H  R  E  L  C  C  C  K  L  D  *  R  R  S  S  Q  A  S  M  G  N  N  V  G  C  R  Y  D  Y  G  S  L  Y  W  S  S  H  P  R  D  S  *  V  D  L  A  *  F  C  C  T  S  R  H  C  A  N  L  P  S  T  R  K  S  K  R  D  C  *  E  S  *  L  G  S  V  *  G  D  L  N  *  T  S  *  A  R  S  *  L  L  H  N  P  C  R  S  P  S  Q  V  H  P  T  D  S  K  T  D  D  R  N  C  F  S  W  R  L  N  S  C  K  V  V  L  S  L  S  Q  G  E  F  R  L  *  T  L  G  *  H  T  *  H  L  *  S  V  R  Y  I  V  I  N  W  *  W  T  E  T  W  F  N  L  *  C  K  *  H  R  S  V  C  *  A  L  D  </second_frame>
            <third_frame>   I  I  Y  S  S  N  S  F  A  S   : D  V  D  W  K  M  A  S  V  Q  T  A  L  T  S  L  L  C  K  K  G  N  N  N  P  Q  V  N  V  P  R  S  S  F  L  P  G  F  D  L  T  G  Q  V  A  V  T  G  R  R  E  T  R  F  N  S  F  S  S  P  R  A  T  L  T  F  D  P  P  S  T  D  N  K  E  K  T  K  P  K  H  T  V  D  P  N  A  P  D  F  L  P  L  P  P  F  E  Q  C  F  P  K  S  S  K  E  Y  S :   E  V  M  H  E  E  T  G  H  V  L  K  V  P  F  R  R  I  H  L  S  G  D  E  P  H  F  D  T  Y  D  T  S  G  P  Q  G  V  N  P  R  V   : G  L  P  K  L  R  T  E  W  I  N  R  R  E  K  L  G  G  P  R  Y  T  Q  M  F  Y  A  K  Q  G  I  I  T  E  E  M  V  Y  C  A  A  R  E  K  M  D  P  E  F  V  R  S  E  V  A  R  G  R  A  I  I  P  S  N  K  K  H  P  E  L  E  P  M  I  V  G  R  K  F  L  V  K  V  N  A  N  I  G  N  S  A  V  V  S  S  I  E  E  E  V  H  K  L  Q  W  A  T  M  W  G  A  D  T  I  M  D  L  S  T  G  R  H  I  H  E  T  R  E  W  I  L  R  N  S  A  V  P  V  G  T  V  P  I  Y  Q  A  L  E  K  V  N  G  I  A  E  N  L  S  W  E  V  F  R  E  T  L  I  E  Q  A  E  Q  G  V  D  Y  F  T  I  H  A  G  V  L  L  R  Y  I  P  L  T  A  K  R  M  T  G  I  V  S  R  G  G  S  I  H  A  K  W  C  L  A  Y  H  K  E  N  F  A  Y  E  H  W  D  D  I  L  D  I  C  N  Q  Y  D  I  S  L  S  I  G  D  G  L  R  P  G  S  I  Y  D  A  N  D  T  A  Q  F  A  E  L  L  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0144J05.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77272" stop="77302"/>
                    <exon start="78828" stop="79149"/>
                    <exon start="79394" stop="79521"/>
                    <exon start="80158" stop="80942"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1266</number_coding_nucleotides>
                  <number_encoded_amino_acids>422</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIYSSNSFASDVDWKMASVQTALTSLLCKKGNNNPQVNVPRSSFLPGFDLTGQVAVTGRRETRFNSFSSPRATLTFDPPSTDNKEKTKPKHTVDPNAPDFLPLPPFEQCFPKSSKEYSEVMHEETGHVLKVPFRRIHLSGDEPHFDTYDTSGPQGVNPRVGLPKLRTEWINRREKLGGPRYTQMFYAKQGIITEEMVYCAAREKMDPEFVRSEVARGRAIIPSNKKHPELEPMIVGRKFLVKVNANIGNSAVVSSIEEEVHKLQWATMWGADTIMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVNGIAENLSWEVFRETLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDDILDICNQYDISLSIGDGLRPGSIYDANDTAQFAELLT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="81327" PGL_stop="82656"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81327" e_stop="81800"/>
            <exon e_start="81907" e_stop="82009"/>
            <exon e_start="82173" e_stop="82656"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.413" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.479" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81327" e_stop="81800" e_length="474"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.413">
            <gDNA_intron_boundary i_start="81801" i_stop="81906" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81907" e_stop="82009" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.479">
            <gDNA_intron_boundary i_start="82010" i_stop="82172" i_length="163"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="82173" e_stop="82656" e_length="484"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81327" stop="81800"/>
              <exon start="81907" stop="82009"/>
              <exon start="82173" stop="82656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324201" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGCATCTTGGTCTGCCTAATCGCGATGACGTGAAGACAGGTGTAATATCATATAAGATAGCTGCTCATGCAGCTGATCTTGCAAAAGGTCACCCGCTATCTCAAGCCTGGGATGATGCACTTAGCAAGGCAAGATTTGAGTTCAGATGGATGGACCAATTCGCTTTATCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCTATGTGCGGGCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGAAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAGAATTACATCAACTCTTTGAAGAGCCAAAG : GAATGTGTAAAGATCGAAAACTGGCTCACAGATTTCTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAG : CTTCAAATGCTGACTGATCAGGCTGAGAAAGTCCCTTTGAACCTGAACGGGATAATTCCTGCGTAGGGAGCGTGCAATTTCTTTTTTCTTGCTTGCACAGGGATGGCGATTCTCCAAAATGGTTGAAAATTCAAAATTAATCTGATCCTGCTCTTTGCCAGGACCAGTTTATTCACTGTCTATTCAAGACACCATCTTGTATTGTTTGTTTTTTTGGTGTCCTGTACCGCATTGAGGCCTGACTAAATACAGATTCCCGCACTCTGTACATAACAGAGCTCGAATTCGACACCTTTGATTGGTAGTAAAGGGGTATTTATCACTCCATCACGACCCTTGTTGGTAAGGCATATTCGTGTATGCCTCTGAGACGCGATTGGTTACTTACAATTGACCAATTTTCTCATGGTTAGTCTAGCTTTGGTTGGACTATTGAAACATTCAGTAATATGAATGACTCAATTGCATATATACCTTCATATTT</gDNA_template>
            <first_frame> R  A  S  W  S  A  *  S  R  *  R  E  D  R  C  N  I  I  *  D  S  C  S  C  S  *  S  C  K  R  S  P  A  I  S  S  L  G  *  C  T  *  Q  G  K  I  *  V  Q  M  D  G  P  I  R  F  I  I  G  P  R  Y  C  N  V  L  S  R  R  N  F  T  S  R  W  G  *  S  G  T  F  L  L  Y  V  R  A  *  V  L  L  H  E  N  N  R  R  Y  K  K  V  C  *  K  S  W  L  W  K  C  R  G  S  H  S  A  G  H  G  C  Y  E  C  S  V  S  S  C  K  K  N  H  *  W  G  T  T  R  *  G  W  R  *  D  L  L  A  R  E  L  H  Q  L  F  E  E  P  K  :  E  C  V  K  I  E  N  W  L  T  D  F  *  S  D  H  N  S  I  G  Q  S  R  R  R  *  *  E  P  H  Y  Q  V  L   : A  S  N  A  D  *  S  G  *  E  S  P  F  E  P  E  R  D  N  S  C  V  G  S  V  Q  F  L  F  S  C  L  H  R  D  G  D  S  P  K  W  L  K  I  Q  N  *  S  D  P  A  L  C  Q  D  Q  F  I  H  C  L  F  K  T  P  S  C  I  V  C  F  F  G  V  L  Y  R  I  E  A  *  L  N  T  D  S  R  T  L  Y  I  T  E  L  E  F  D  T  F  D  W  *  *  R  G  I  Y  H  S  I  T  T  L  V  G  K  A  Y  S  C  M  P  L  R  R  D  W  L  L  T  I  D  Q  F  S  H  G  *  S  S  F  G  W  T  I  E  T  F  S  N  M  N  D  S  I  A  Y  I  P  S  Y   </first_frame>
            <second_frame>  E  H  L  G  L  P  N  R  D  D  V  K  T  G  V  I  S  Y  K  I  A  A  H  A  A  D  L  A  K  G  H  P  L  S  Q  A  W  D  D  A  L  S  K  A  R  F  E  F  R  W  M  D  Q  F  A  L  S  L  D  P  V  T  A  M  S  F  H  D  E  T  L  P  A  D  G  A  K  V  A  H  F  C  S  M  C  G  P  K  F  C  S  M  K  I  T  E  D  I  R  K  Y  A  E  N  H  G  Y  G  N  A  E  E  A  I  Q  Q  G  M  D  A  M  S  A  A  F  Q  A  A  K  K  T  I  S  G  E  Q  H  G  E  V  G  G  E  I  Y  L  P  E  N  Y  I  N  S  L  K  S  Q  R :   N  V  *  R  S  K  T  G  S  Q  I  S  E  V  I  T  T  P  S  A  S  Q  G  G  G  S  R  S  L  I  I  K  C  *  :  L  Q  M  L  T  D  Q  A  E  K  V  P  L  N  L  N  G  I  I  P  A  *  G  A  C  N  F  F  F  L  A  C  T  G  M  A  I  L  Q  N  G  *  K  F  K  I  N  L  I  L  L  F  A  R  T  S  L  F  T  V  Y  S  R  H  H  L  V  L  F  V  F  L  V  S  C  T  A  L  R  P  D  *  I  Q  I  P  A  L  C  T  *  Q  S  S  N  S  T  P  L  I  G  S  K  G  V  F  I  T  P  S  R  P  L  L  V  R  H  I  R  V  C  L  *  D  A  I  G  Y  L  Q  L  T  N  F  L  M  V  S  L  A  L  V  G  L  L  K  H  S  V  I  *  M  T  Q  L  H  I  Y  L  H  I  </second_frame>
            <third_frame>   S  I  L  V  C  L  I  A  M  T  *  R  Q  V  *  Y  H  I  R  *  L  L  M  Q  L  I  L  Q  K  V  T  R  Y  L  K  P  G  M  M  H  L  A  R  Q  D  L  S  S  D  G  W  T  N  S  L  Y  H  W  T  P  L  L  Q  C  P  F  T  T  K  L  Y  Q  P  M  G  L  K  W  H  I  S  A  L  C  A  G  L  S  F  A  P  *  K  *  P  K  I  *  E  S  M  L  K  I  M  V  M  E  M  Q  R  K  P  F  S  R  A  W  M  L  *  V  Q  R  F  K  L  Q  K  K  P  L  V  G  N  N  T  V  R  L  A  V  R  S  T  C  Q  R  I  T  S  T  L  *  R  A  K   : G  M  C  K  D  R  K  L  A  H  R  F  L  K  *  S  Q  L  H  R  P  V  K  E  A  V  V  G  A  S  L  S  S  V  S :   F  K  C  *  L  I  R  L  R  K  S  L  *  T  *  T  G  *  F  L  R  R  E  R  A  I  S  F  F  L  L  A  Q  G  W  R  F  S  K  M  V  E  N  S  K  L  I  *  S  C  S  L  P  G  P  V  Y  S  L  S  I  Q  D  T  I  L  Y  C  L  F  F  W  C  P  V  P  H  *  G  L  T  K  Y  R  F  P  H  S  V  H  N  R  A  R  I  R  H  L  *  L  V  V  K  G  Y  L  S  L  H  H  D  P  C  W  *  G  I  F  V  Y  A  S  E  T  R  L  V  T  Y  N  *  P  I  F  S  W  L  V  *  L  W  L  D  Y  *  N  I  Q  *  Y  E  *  L  N  C  I  Y  T  F  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0144J05.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81328" stop="81800"/>
                    <exon start="81907" stop="81916"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EHLGLPNRDDVKTGVISYKIAAHAADLAKGHPLSQAWDDALSKARFEFRWMDQFALSLDPVTAMSFHDETLPADGAKVAHFCSMCGPKFCSMKITEDIRKYAENHGYGNAEEAIQQGMDAMSAAFQAAKKTISGEQHGEVGGEIYLPENYINSLKSQRNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="95224" PGL_stop="94547"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95224" e_stop="94547"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="95224" e_stop="94547" e_length="678"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95224" stop="94547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325812" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAGGTATCACTTCTCTCACCACTTATACTAAAGTTAGTATATTTTCTTAAAAATATATATATAATTGTGTGGTGTTCGAGTCAGTTTGCGTTAAATCATCTTTGATTTCGAGATGTCGGCAAGAGGATGTGAAGGAGTGAGCGTGGTGAAGCCAGAGATGACCAAGAATACAAAGATAGCAAGCAAGTTTCAAAAGCAAAACTCTACAAAGAGTGTTGTTGATGGTACTACAAATAATGCAAGGAGTACCACCACCACAACAAGTTGTAGCTTCAAGATGCCTAATAGATCCCAATTATCCCCTATTAAGATTTTCAAACAACTTGGAGGAAAAATGGTTGCACTTATGAAGATGGTATCTTCTTCAAAGAGAAGTTGTAGGAAAGTTACTAATTCGTCAGAGAGAGCAACAATTTCTGCTAAGCCAACCGCTACCTTAAATATTGACTCACATAGAGCGGAGGCAATTGATGATTGTATTCAATTCATCAACTTGTCTTCTTCTTTGCCTAGATCTAATTCAGTGTCATAAGAGATCGGAAAAAATCTCTTGATAAGAAGCGTTTTATCGTGTTATTTATATTAATTGACCACTTTTGTATGGTTTTGTATCTATAAGTAGATTATATTTTTAACATTAGACGTGTGATTTGAATAGAATAATTATTTTGAACGA</gDNA_template>
            <first_frame> Q  R  Y  H  F  S  H  H  L  Y  *  S  *  Y  I  F  L  K  I  Y  I  *  L  C  G  V  R  V  S  L  R  *  I  I  F  D  F  E  M  S  A  R  G  C  E  G  V  S  V  V  K  P  E  M  T  K  N  T  K  I  A  S  K  F  Q  K  Q  N  S  T  K  S  V  V  D  G  T  T  N  N  A  R  S  T  T  T  T  T  S  C  S  F  K  M  P  N  R  S  Q  L  S  P  I  K  I  F  K  Q  L  G  G  K  M  V  A  L  M  K  M  V  S  S  S  K  R  S  C  R  K  V  T  N  S  S  E  R  A  T  I  S  A  K  P  T  A  T  L  N  I  D  S  H  R  A  E  A  I  D  D  C  I  Q  F  I  N  L  S  S  S  L  P  R  S  N  S  V  S  *  E  I  G  K  N  L  L  I  R  S  V  L  S  C  Y  L  Y  *  L  T  T  F  V  W  F  C  I  Y  K  *  I  I  F  L  T  L  D  V  *  F  E  *  N  N  Y  F  E  R </first_frame>
            <second_frame>  K  G  I  T  S  L  T  T  Y  T  K  V  S  I  F  S  *  K  Y  I  Y  N  C  V  V  F  E  S  V  C  V  K  S  S  L  I  S  R  C  R  Q  E  D  V  K  E  *  A  W  *  S  Q  R  *  P  R  I  Q  R  *  Q  A  S  F  K  S  K  T  L  Q  R  V  L  L  M  V  L  Q  I  M  Q  G  V  P  P  P  Q  Q  V  V  A  S  R  C  L  I  D  P  N  Y  P  L  L  R  F  S  N  N  L  E  E  K  W  L  H  L  *  R  W  Y  L  L  Q  R  E  V  V  G  K  L  L  I  R  Q  R  E  Q  Q  F  L  L  S  Q  P  L  P  *  I  L  T  H  I  E  R  R  Q  L  M  I  V  F  N  S  S  T  C  L  L  L  C  L  D  L  I  Q  C  H  K  R  S  E  K  I  S  *  *  E  A  F  Y  R  V  I  Y  I  N  *  P  L  L  Y  G  F  V  S  I  S  R  L  Y  F  *  H  *  T  C  D  L  N  R  I  I  I  L  N   </second_frame>
            <third_frame>   K  V  S  L  L  S  P  L  I  L  K  L  V  Y  F  L  K  N  I  Y  I  I  V  W  C  S  S  Q  F  A  L  N  H  L  *  F  R  D  V  G  K  R  M  *  R  S  E  R  G  E  A  R  D  D  Q  E  Y  K  D  S  K  Q  V  S  K  A  K  L  Y  K  E  C  C  *  W  Y  Y  K  *  C  K  E  Y  H  H  H  N  K  L  *  L  Q  D  A  *  *  I  P  I  I  P  Y  *  D  F  Q  T  T  W  R  K  N  G  C  T  Y  E  D  G  I  F  F  K  E  K  L  *  E  S  Y  *  F  V  R  E  S  N  N  F  C  *  A  N  R  Y  L  K  Y  *  L  T  *  S  G  G  N  *  *  L  Y  S  I  H  Q  L  V  F  F  F  A  *  I  *  F  S  V  I  R  D  R  K  K  S  L  D  K  K  R  F  I  V  L  F  I  L  I  D  H  F  C  M  V  L  Y  L  *  V  D  Y  I  F  N  I  R  R  V  I  *  I  E  *  L  F  *  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0144J05.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95128" stop="94691"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIFDFEMSARGCEGVSVVKPEMTKNTKIASKFQKQNSTKSVVDGTTNNARSTTTTTSCSFKMPNRSQLSPIKIFKQLGGKMVALMKMVSSSKRSCRKVTNSSERATISAKPTATLNIDSHRAEAIDDCIQFINLSSSLPRSNSVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="107597" PGL_stop="108762"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107597" e_stop="108260"/>
            <exon e_start="108684" e_stop="108762"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.939" acc_prob="0.000" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="107597" e_stop="108260" e_length="664"/>
          </exon>
          <intron i_serial="1" don_prob="0.939" acc_prob="0.000">
            <gDNA_intron_boundary i_start="108261" i_stop="108683" i_length="423"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108684" e_stop="108762" e_length="79"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107597" stop="108260"/>
              <exon start="108684" stop="108762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321997" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATAATATAGATTTGTGTATCTGAATTCATAAATTCAAAAATATAATATTACGAAACCTTAAAAATTAAACTCATAAATTTTTAATTTTTAATCCGGTCTCTCTTTGCATAGCATCATTTTGCCATGTATATATAAAAATTACACCATATAGAAAGTATATAATATATGTTGCAAAATGAACCAAAATTTTGGAAGAAACAAATTCTTTTTTACTAATAATAGAAACATTGGAGTTGTCAAATATGCTCCAAAACGAAAGGGCAATATTTTGTTTATTTTGTCCATATACATGAATGACATGATAGGTTTTATGGTACAAAACAAAAATTGAGTATGTCATGCTCAAATTATAGTTTCTCATTTTATTTACATTTCTCATCGATATTTTGTATTTGTCTCGTTAAATCTTGATTAACGTCAGAAACTATCACAAAATATCACATTAAGGTAAAACCTTCTCTAGCTATAACAAAGGTAACTTCATATTCAGGCTCGAAATTGACCTCTCGCTTTATTATATTCCTATCATTTTTTTCTTTTTATATTCTTATATTCCTAATATCTCTTGCAGGATGGAACCTCACATTACATGAAAGGGATTATTCTTTGTCTTGCCTATTGTGTCATTGGTGCTTGTTTCTTTTTCCATAAAATTCCAATCA : ATATTGAAAACTATTCATCTGGGATCATGTCATCTTAACCAAGTTCATTCAGCAACGTGATGAACCATCAGAAAGAAAT</gDNA_template>
            <first_frame> E  *  Y  R  F  V  Y  L  N  S  *  I  Q  K  Y  N  I  T  K  P  *  K  L  N  S  *  I  F  N  F  *  S  G  L  S  L  H  S  I  I  L  P  C  I  Y  K  N  Y  T  I  *  K  V  Y  N  I  C  C  K  M  N  Q  N  F  G  R  N  K  F  F  F  T  N  N  R  N  I  G  V  V  K  Y  A  P  K  R  K  G  N  I  L  F  I  L  S  I  Y  M  N  D  M  I  G  F  M  V  Q  N  K  N  *  V  C  H  A  Q  I  I  V  S  H  F  I  Y  I  S  H  R  Y  F  V  F  V  S  L  N  L  D  *  R  Q  K  L  S  Q  N  I  T  L  R  *  N  L  L  *  L  *  Q  R  *  L  H  I  Q  A  R  N  *  P  L  A  L  L  Y  S  Y  H  F  F  L  F  I  F  L  Y  S  *  Y  L  L  Q  D  G  T  S  H  Y  M  K  G  I  I  L  C  L  A  Y  C  V  I  G  A  C  F  F  F  H  K  I  P  I   : N  I  E  N  Y  S  S  G  I  M  S  S  *  P  S  S  F  S  N  V  M  N  H  Q  K  E   </first_frame>
            <second_frame>  N  N  I  D  L  C  I  *  I  H  K  F  K  N  I  I  L  R  N  L  K  N  *  T  H  K  F  L  I  F  N  P  V  S  L  C  I  A  S  F  C  H  V  Y  I  K  I  T  P  Y  R  K  Y  I  I  Y  V  A  K  *  T  K  I  L  E  E  T  N  S  F  L  L  I  I  E  T  L  E  L  S  N  M  L  Q  N  E  R  A  I  F  C  L  F  C  P  Y  T  *  M  T  *  *  V  L  W  Y  K  T  K  I  E  Y  V  M  L  K  L  *  F  L  I  L  F  T  F  L  I  D  I  L  Y  L  S  R  *  I  L  I  N  V  R  N  Y  H  K  I  S  H  *  G  K  T  F  S  S  Y  N  K  G  N  F  I  F  R  L  E  I  D  L  S  L  Y  Y  I  P  I  I  F  F  F  L  Y  S  Y  I  P  N  I  S  C  R  M  E  P  H  I  T  *  K  G  L  F  F  V  L  P  I  V  S  L  V  L  V  S  F  S  I  K  F  Q  S  :  I  L  K  T  I  H  L  G  S  C  H  L  N  Q  V  H  S  A  T  *  *  T  I  R  K  K  </second_frame>
            <third_frame>   I  I  *  I  C  V  S  E  F  I  N  S  K  I  *  Y  Y  E  T  L  K  I  K  L  I  N  F  *  F  L  I  R  S  L  F  A  *  H  H  F  A  M  Y  I  *  K  L  H  H  I  E  S  I  *  Y  M  L  Q  N  E  P  K  F  W  K  K  Q  I  L  F  Y  *  *  *  K  H  W  S  C  Q  I  C  S  K  T  K  G  Q  Y  F  V  Y  F  V  H  I  H  E  *  H  D  R  F  Y  G  T  K  Q  K  L  S  M  S  C  S  N  Y  S  F  S  F  Y  L  H  F  S  S  I  F  C  I  C  L  V  K  S  *  L  T  S  E  T  I  T  K  Y  H  I  K  V  K  P  S  L  A  I  T  K  V  T  S  Y  S  G  S  K  L  T  S  R  F  I  I  F  L  S  F  F  S  F  Y  I  L  I  F  L  I  S  L  A  G  W  N  L  T  L  H  E  R  D  Y  S  L  S  C  L  L  C  H  W  C  L  F  L  F  P  *  N  S  N  Q :   Y  *  K  L  F  I  W  D  H  V  I  L  T  K  F  I  Q  Q  R  D  E  P  S  E  R  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0144J05.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108010" stop="108249"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTSETITKYHIKVKPSLAITKVTSYSGSKLTSRFIIFLSFFSFYILIFLISLAGWNLTLHERDYSLSCLLCHWCLFLFP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 32 chains have been computed
$ 
$ memory statistics:
$ 23128 bytes spliced alignments in total
$ 11 spliced alignments have been stored
$ 2102 bytes was the average size of a spliced alignment
$ 16624 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1662 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 40 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 02:54:55
-->
