<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 14:24:25"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0146A12-pGod6/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0146A12-pGod6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0146A12-pGod6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334013" ref_strand="-" ref_description="SGN-U334013        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | 40S ribosomal protein S11 (RPS11C) | chr5:8008043-8009439 REVERSE | Aliases: MRO11.22, MRO11_22(evalue: 5e-28, score=121) genbank/nr: ribosomal(evalue: 3e-27, score=125)">
      <seq>aacagaaccatcatggtttgtggcaattacctaccttatgtcaagaagtatcagggattcgagaaggggcactccaatattccagctcacatatccccgtggttccgagagaaagggggggatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgttttgaaggggattccggctggttttggtggtggcgggaagaaagctttccctggaatgtaatgtgtttttccctttcaaattttgttttttgtaggaatattatgtcaaaacgtttttacgttttactgagttgttttttcaaattttgaacttaaagttagtaagttatgttttattaagcctttgaactagcttttaaaatgttgtttgattgaacttttttataaaaaggatattagggggtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0146A12-pGod6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0146A12.1" temp_strand="+" temp_description="C06HBa0146A12.1  AC211054.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0146A12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7783" stop="8971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8083" g_stop="8138" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8139" i_stop="8213" i_length="75">
            <donor d_prob="0.952" d_score="0.90"/>
            <acceptor a_prob="0.986" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8214" g_stop="8303" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="146" r_length="90" r_score="0.911"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8304" i_stop="8389" i_length="86">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8390" g_stop="8659" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="416" r_length="270" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="424" polyA_stop="462"/>
      <MATCH_line gen_id="C06HBa0146A12.1" gen_strand="+" ref_id="SGN-U334013" ref_strand="-">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0146A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334013" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8083" e_stop="8138"/>
          <exon e_start="8214" e_stop="8303"/>
          <exon e_start="8390" e_stop="8659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAGGCAAGAGCTTGTCACTTATAAATATTGGCTACTTGACTTCTTCTTGAGTTAGTTTTAACACATAAATTATTTCAGATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGATATTAG</genome_strand>
        <mrna_strand>AACAGAACCATCATGGTTTGTGGCAATTACCTACCTTATGTCAAGAAGTATCAGGG...........................................................................ATTCGAGAAGGGGCACTCCAATATTCCAGCTCACATATCCCCGTGGTTCCGAGAGAAAGGGGGGGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTTTTGAAGGGGATTCCGGCTGGTTTTGGTGGTGGCGGGAAGAAAGCTTTCCCTGGAATGTAATGTGTTTTTCCCTTTCAAATTTTGTTTTTTGTAGGAATATTATGTCAAAACGTTTTTACGTTTTACTGAGTTGTTTTTTCAAATTTTGAACTTAAAGTTAGTAAGTTATGTTTTATTAAGCCTTTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTTTATAAAAAGGATATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0146A12-pGod6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334010" ref_strand="-" ref_description="SGN-U334010        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | 40S ribosomal protein S11 (RPS11C) | chr5:8008043-8009439 REVERSE | Aliases: MRO11.22, MRO11_22(evalue: 3e-37, score=151) genbank/nr: gi|6984142|gb|AAF34771.1| 40S ribosomal protein S11 [Euphorbia esula](evalue: 5e-38, score=160)">
      <seq>aaaaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaacagggagatcatgttactattggacagtgcaggcctttatccaaacccgtaaggttcaatgtcttgaaggtgattccggctggttctggtggtggccgaaacaaagctccctctggaatgtaatgcgattctccattacaaattttgtttcttgtaggaatagtatgtcaaaacgtttttacgtttgtttgagttgtttcttcaaattttgaacttaatgttagtaagttatgttttattaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0146A12-pGod6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0146A12.1" temp_strand="+" temp_description="C06HBa0146A12.1  AC211054.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0146A12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7921" stop="8899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8221" g_stop="8303" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8304" i_stop="8389" i_length="86">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8390" g_stop="8599" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="293" r_length="210" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="294" polyA_stop="311"/>
      <MATCH_line gen_id="C06HBa0146A12.1" gen_strand="+" ref_id="SGN-U334010" ref_strand="-">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0146A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334010" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8221" e_stop="8303"/>
          <exon e_start="8390" e_stop="8599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGAACCATCTCATTTTGATTTTTCTATAGTATTTTTTTCATCATTTGCAGTTATAGTAAGTAATTACATTTTCTGATTCACAGGCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAA</genome_strand>
        <mrna_strand>AAAAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAACAGGGAGATCATGTTACTATTGGACAGTGCAG......................................................................................GCCTTTATCCAAACCCGTAAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCCGAAACAAAGCTCCCTCTGGAATGTAATGCGATTCTCCATTACAAATTTTGTTTCTTGTAGGAATAGTATGTCAAAACGTTTTTACGTTTGTTTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0146A12-pGod6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337651" ref_strand="+" ref_description="SGN-U337651        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to expressed protein [Arabidopsis thaliana] (TAIR:At2g25270.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:XP_549958.1) | chr5:26963980-26966387 REVERSE | Aliases: K9I9.11, K9I9_11(evalue: 5e-13, score=69.7) genbank/nr: unknown(evalue: 2e-10, score=69.7)">
      <seq>gaatggaatggtgctttggctcacttttgcaagctttgcactggcctcttcgatttttgataataatcttctgctgctgtatttgacaactctgagttggatgctaaacaactttgatttcttctcccatagccttgcagatgacacttgctcagctttgaaggactttcaacggaatcctcaaaacaatatcttgcaaattatacttcaaagtgaaaaaacaaaaacttctgacaaaacattagagcatattggccacacggttcctaatttcattactcaggtattgttatctataatatccaagaaacatggacaggagcttacatatattctcttagctttactaagacaattatatttttttcgtgttttcgattatcagctaaattccaagctgacagagatacaaggattaggattaaatgatatgagggaaaatagcatcggaaaaatttgtgaccccttctccagtgcacctaattacaacttcacacctgatctctgcccaaaggatattattccaattgaagaactaaaatatttaagttacaagcttcaatttactcaacatgaataaggatctttatgtctgaaaagttggagtttgttttttcttatgtttgcctgtaggttctgtcaagagtcaaatgttataaaggaaattcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0146A12-pGod6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0146A12.1" temp_strand="+" temp_description="C06HBa0146A12.1  AC211054.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0146A12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11284" stop="12723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11583" g_stop="11643" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11644" i_stop="11730" i_length="87">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11731" g_stop="11801" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="132" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11802" i_stop="11884" i_length="83">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11885" g_stop="12423" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="671" r_length="539" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0146A12.1" gen_strand="+" ref_id="SGN-U337651" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0146A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11583" e_stop="11643"/>
          <exon e_start="11731" e_stop="11801"/>
          <exon e_start="11885" e_stop="12423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGGAATGGTGCTTTGTCTCACTTTTGCAAGCTTTGCACTGGCCTCTTCGATTTTTGATGTAAGTAAGATTTTGATACTTATATTTGACACAAAATCAACTTTATATTCTCAAAAGCCTAAATAAACAGCTCTTATAAATTACTAGAATAATCTTCTGCTGCTGTATTTGACAACTCTGAGTTGGATGCTAAACAACTTTGATTTCTTCTCCCATAGGTAAGCACAAATCCTTCTCTTTCTCTCGTACTGAAACTTAATTTTTTATTTTATACGTTGTACCTTTGAAAATATTGATACAGCCTTGCAGATGACACTTGCTCAGCTTTGAAGGACTTTCAACGGAATCCTCAAAACAATATCTTGCAAATTATACTTCAAAGTGAAAAAACAAAAACTTCTGACAAAACATTAGAGCATATTGGCCACACGGTTCCTAATTTCATTACTCAGGTATTGTTATCTATAATATCCAAGAAACATGGACAGGAGCTTACATATATTCTCTTAGCTTTACTAAGACAATTATATTTTTTTCGTGTTTTCGATTATCAGCTAAATTCCAAGCTGACAGAGATACAAGGATTAGGATTAAATGATATGAGGGAAAATAGCGTCGGAAAAATTTGTGACCCCTTCTCCAGTGCACCTAATTACAACTTCACACCTGATCTCTGCCCAAAGGATATTATTCCAATTGAAGAACTAAAATATTTAAGTTACAAGCTTCAATTTACTCAACATGAATAAGGATCTTTATGTCTGAAAAGTTGGAGTTTGTTTTTTCTTATGTTTGCCTGTAGGTTCTGTCAAGAGTCAAATGTTATAAAGGAAATTCTTT</genome_strand>
        <mrna_strand>GAATGGAATGGTGCTTTGGCTCACTTTTGCAAGCTTTGCACTGGCCTCTTCGATTTTTGAT.......................................................................................AATAATCTTCTGCTGCTGTATTTGACAACTCTGAGTTGGATGCTAAACAACTTTGATTTCTTCTCCCATAG...................................................................................CCTTGCAGATGACACTTGCTCAGCTTTGAAGGACTTTCAACGGAATCCTCAAAACAATATCTTGCAAATTATACTTCAAAGTGAAAAAACAAAAACTTCTGACAAAACATTAGAGCATATTGGCCACACGGTTCCTAATTTCATTACTCAGGTATTGTTATCTATAATATCCAAGAAACATGGACAGGAGCTTACATATATTCTCTTAGCTTTACTAAGACAATTATATTTTTTTCGTGTTTTCGATTATCAGCTAAATTCCAAGCTGACAGAGATACAAGGATTAGGATTAAATGATATGAGGGAAAATAGCATCGGAAAAATTTGTGACCCCTTCTCCAGTGCACCTAATTACAACTTCACACCTGATCTCTGCCCAAAGGATATTATTCCAATTGAAGAACTAAAATATTTAAGTTACAAGCTTCAATTTACTCAACATGAATAAGGATCTTTATGTCTGAAAAGTTGGAGTTTGTTTTTTCTTATGTTTGCCTGTAGGTTCTGTCAAGAGTCAAATGTTATAAAGGAAATTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0146A12-pGod6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0146A12-pGod6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0146A12.1" temp_strand="+" temp_description="C06HBa0146A12.1  AC211054.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0146A12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41854" stop="43165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42154" g_stop="42866" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0146A12.1" gen_strand="+" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0146A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42154" e_stop="42866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGAAAAATCGGCGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCTACCATCACCCCATCCTTCGAAACCACATGCCCCTAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCTGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTAGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATCTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGAGGAAGAGGATACTTGTTCTTAACCGTTACCTTATTTAGTTGTCTGTAGTCTATGCACATTCGAAAGCTGCCATCCTTTTTCTTCACAAATAATACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGCTTAGCAACTC-TTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGA</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTCA-CAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0146A12-pGod6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0146A12-pGod6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0146A12.1" temp_strand="+" temp_description="C06HBa0146A12.1  AC211054.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0146A12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42846" stop="43776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43146" g_stop="43476" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0146A12.1" gen_strand="+" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0146A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43146" e_stop="43476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGATAATGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCATAAAAGTTACAAGACAAGACCTATGCACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGCGGAAGATACATATGAAAATGTAGAGCCAGGGTCAAATAATACAGAAGCCATACAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0146A12-pGod6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0146A12-pGod6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0146A12.1" temp_strand="-" temp_description="C06HBa0146A12.1  AC211054.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0146A12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45093" stop="43943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44793" g_stop="44243" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0146A12.1" gen_strand="-" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0146A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44793" e_stop="44243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATACTAGGGCGGTTACTCCTCCACCGACTGAGGAAAATG-AACA-AGGG-GAGGGTGGGGAAAATGAAAAAGTACAGAATGAGGAATTACCACCCTAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGTCTAACTACGGGGCCTGTAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGCGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACCGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0146A12-pGod6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346850" ref_strand="+" ref_description="SGN-U346850        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 2e-30, score=135)">
      <seq>cgaaaatggaggcttgtagacgatttcttcttcatcatcctcctcagtcacttcacggtcggggccactgttatctgctcccagatcatgggcgaggtattttccgccctttgggtcgctatgggtcgccaattcctcgtcgagcgccgcgtttctgtccaacaacacagcagtctcgatatctatcttcgcctctctcgcctttccttcgtgtatctctaaacgaagcaagttcaaccttttccttaggctttcggtttccatctcaacctccttctttctctttatctgtgacgccagatcttcatccaatgttgtgaccgcagctttgtagatcgccgtggtcgcgtctactttgagtccttcttccttaaccttctgaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0146A12-pGod6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0146A12.1" temp_strand="-" temp_description="C06HBa0146A12.1  AC211054.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0146A12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53555" stop="52572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53255" g_stop="52870" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0146A12.1" gen_strand="-" ref_id="SGN-U346850" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0146A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53255" e_stop="52870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAATGGAGGCTTGTAGACGATTTCTTCTTCATCGTCCTCCTCAATTACTTCACAGCCGGGGCCACTGTTATCTGCTCCCTGATCACGGGCGAGGTATTTTCCGCCCTTTGAGTTGCTATGGGTCTCCAATTCCTCGTCGAGTGCCGCACTTCTGGCCGACAACACGGCAGTCTCAATATCTATCTTCGCTTCTCTCGCCTTTCCTTCGTGTATCTCCAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTTTGGTTTCCATCTCAACCTCCTACTTTCTTTTTATCTGCGATGCCAGATCTTCATCCAAGGTCGTGACCACAGCTTTGTAGATCGTCGTGGTCATGTCTACCTTAAGTCCTTCCTCTTTAATCTTCTGAATTT</genome_strand>
        <mrna_strand>CGAAAATGGAGGCTTGTAGACGATTTCTTCTTCATCATCCTCCTCAGTCACTTCACGGTCGGGGCCACTGTTATCTGCTCCCAGATCATGGGCGAGGTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCGTTTCTGTCCAACAACACAGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCTAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGACGCCAGATCTTCATCCAATGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCGCGTCTACTTTGAGTCCTTCTTCCTTAACCTTCTGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0146A12-pGod6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338284" ref_strand="+" ref_description="SGN-U338284        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: RNase(evalue: 2e-76, score=161)">
      <seq>cgttttgagacgggtgccacctcacgaacttaacgctatgagttcaccttggccatttgtagcttggggaatggatgtcatcagttctatagagtctaccgcttctaatggacatagattcattttggttgccattgattatttcaccaagtgggtggaagcaaccccttacaagtcggtaaccaagaaagtggtggtcgattttgttcgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggggcaaatctcaacagtcatttgatgaaacagatatatgaacaatttaagttattcatcgaaagtcaactgcttatcgcccccaaatgaacagagctgtagaagccgccaacaaaaatatcaagaagattttgaggaaaatgattgacaaacagcggggttggcatgaaatgttgccatatgcttttctaggttatcgaacgacggtcagaacatcgacttgggctactccatacttgctagtatatggaacagaggcagtcgtgcctgttgaagtcgagataccgtcattgcggatcatccaagaagctgaattaagtaacgccgaatggcttagcaaacagattgatcaactagccttaattgataagaagagaatagttgcgtttgccatggcaagttgtacagacagagaatgactcgcgcttttcacaaaagagtaagagccaggaattttgaagttggtcagttggttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0146A12-pGod6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0146A12.1" temp_strand="+" temp_description="C06HBa0146A12.1  AC211054.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0146A12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59857" stop="61195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60156" g_stop="60895" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0146A12.1" gen_strand="+" ref_id="SGN-U338284" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0146A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U338284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60156" e_stop="60895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTGATACGGGTGCCGCCTCACAAACTTAATGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCAGTCCTATAGAGCCAGTCGCTTCCAATGGGCACAGATTCGTTTTGGTTGCCATCGATTATTTCACCAAGTGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATCACTGATAA-GGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATTCACCGGAGGTCAACTTCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAAAAGATTCTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATGTTGCCATGCGCTCTACTAGGTTATCGAACAACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATATGGAGTAGAAGCAGTCGTGCCTGTTGAAGTCGAGATACCGTCATTAAGGATCATCCAAGAAGCTGAGTTAAGCAACGCTGAGTGGGTTAGAAAACGGATGGATCAACTAGCTTTGATTGATGAGAAGAGAATGGTCGCCGTCTGTCATGGCCAGTTGTATAGACAGAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCAAGAAATTTTGAAGTTGGTCAGTTGGTTCT</genome_strand>
        <mrna_strand>CGTTTTGAGACGGGTGCCACCTCACGAACTTAACGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCAGTTCTATAGAGTCTACCGCTTCTAATGGACATAGATTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGGTGGAAGCAACCCCTTACAAGTCGGTAACCAAGAAAGTGGTGGTCGATTTTGTTCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGGGCAAATCTCAACAGTCATTTGATGAAACAGATATATGAACAATTTAAG-TTATTCATCGAAAGTCAACTGCTTATCGCCCCCAAATGAACAGAGCTGTAGAAGCCGCCAACAAAAATATCAAGAAGATTTTGAGGAAAATGATTGACAAACAGCGGGGTTGGCATGAAATGTTGCCATATGCTTTTCTAGGTTATCGAACGACGGTCAGAACATCGACTTGGGCTACTCCATACTTGCTAGTATATGGAACAGAGGCAGTCGTGCCTGTTGAAGTCGAGATACCGTCATTGCGGATCATCCAAGAAGCTGAATTAAGTAACGCCGAATGGCTTAGCAAACAGATTGATCAACTAGCCTTAATTGATAAGAAGAGAATAGTTG-CGTTTGCCATGGCAAGTTGTACAGACAGAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGGAATTTTGAAGTTGGTCAGTTGGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0146A12-pGod6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325967" ref_strand="+" ref_description="SGN-U325967        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: RNA-directed(evalue: 1e-85, score=318)">
      <seq>aaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcacaaaagagtaagagccagaattttgaagttggccagttggttcttaagcgtatttttcctcatcaagatgagtacaaaggaaagttcgcaccaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0146A12-pGod6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0146A12.1" temp_strand="+" temp_description="C06HBa0146A12.1  AC211054.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0146A12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59920" stop="61249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60215" g_stop="60949" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0146A12.1" gen_strand="+" ref_id="SGN-U325967" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0146A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60215" e_stop="60949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTGGGGAATGGATGTCATCAGTCCTATAGAGCCAGTCGCTTCCAATGGGCACAGATTCGTTTTGGTTGCCATCGATTATTTCACCAAGTGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATCACTGATAA-GGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATTCACCGGAGGTCAACTTCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAAAAGATTCTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATGTTGCCATGCGCTCTACTAGGTTATCGAACAACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATATGGAGTAGAAGCAGTCGTGCCTGTTGAAGTCGAGATACCGTCATTAAGGATCATCCAAGAAGCTGAGTTAAGCAACGCTGAGTGGGTTAGAAAACGGATGGATCAACTAGCTTTGATTGATGAGAAGAGAATGGTCGCCGTCTGTCATGGCCAGTTGTATAGACAGAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCAAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGACGAGCACAAAGGAAAGTTCGCACCAAACTG</genome_strand>
        <mrna_strand>AAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAG-AATTTTGAAGTTGGCCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGATGAGTACAAAGGAAAGTTCGCACCAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>9</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="8083" PGL_stop="8659"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8083" e_stop="8138"/>
            <exon e_start="8214" e_stop="8303"/>
            <exon e_start="8390" e_stop="8659"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.952" acc_prob="0.986" e_score="0.911"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="0.976"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="8083" e_stop="8138" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.952" acc_prob="0.986">
            <gDNA_intron_boundary i_start="8139" i_stop="8213" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="0.976">
            <gDNA_exon_boundary e_start="8214" e_stop="8303" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8304" i_stop="8389" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="0.959">
            <gDNA_exon_boundary e_start="8390" e_stop="8659" e_length="270"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8083" stop="8138"/>
              <exon start="8214" stop="8303"/>
              <exon start="8390" stop="8659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334013" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8221" stop="8303"/>
              <exon start="8390" stop="8599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334010" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG : ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG : GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAATGTAATGTGTTTTTCCATTTCAAATTTTGTTTCTTGTAGGAATATTATGTCAAAACGTTTCTACGTTTTACTGAGTTGTTTCTTCAAATTTTGAACTTAATGTTAGTAAGTTATGTTTTATTAAGCCTCTGAACTAGCTTTTAAAATGTTGTTTGATTGAACTTTTATATAAAAAGGATATTAG</gDNA_template>
            <first_frame> N  R  T  I  I  V  R  R  N  Y  L  H  Y  V  K  K  Y  Q  R :   Y  E  K  R  H  S  N  I  P  A  H  I  S  P  C  F  R  V  K  E  G  D  H  V  T  I  G  Q  C  R :   P  L  S  K  T  V  R  F  N  V  L  K  V  I  P  A  G  S  G  G  G  G  K  K  A  F  T  G  M  *  C  V  F  P  F  Q  I  L  F  L  V  G  I  L  C  Q  N  V  S  T  F  Y  *  V  V  S  S  N  F  E  L  N  V  S  K  L  C  F  I  K  P  L  N  *  L  L  K  C  C  L  I  E  L  L  Y  K  K  D  I   </first_frame>
            <second_frame>  T  E  P  S  S  F  V  A  I  T  Y  I  M  S  R  S  I  R   : D  T  R  R  G  T  P  I  F  Q  L  T  Y  H  R  A  S  V  *  K  R  E  I  M  L  L  L  D  S  A   : G  L  Y  P  K  P  *  G  S  M  S  *  R  *  F  R  L  V  L  V  V  A  G  R  K  L  S  L  E  C  N  V  F  F  H  F  K  F  C  F  L  *  E  Y  Y  V  K  T  F  L  R  F  T  E  L  F  L  Q  I  L  N  L  M  L  V  S  Y  V  L  L  S  L  *  T  S  F  *  N  V  V  *  L  N  F  Y  I  K  R  I  L  </second_frame>
            <third_frame>   Q  N  H  H  R  S  S  Q  L  P  T  L  C  Q  E  V  S  E  :  I  R  E  E  A  L  Q  Y  S  S  S  H  I  T  V  L  P  C  E  R  G  R  S  C  Y  Y  W  T  V  Q  :  A  F  I  Q  N  R  E  V  Q  C  L  E  G  D  S  G  W  F  W  W  W  R  E  E  S  F  H  W  N  V  M  C  F  S  I  S  N  F  V  S  C  R  N  I  M  S  K  R  F  Y  V  L  L  S  C  F  F  K  F  *  T  *  C  *  *  V  M  F  Y  *  A  S  E  L  A  F  K  M  L  F  D  *  T  F  I  *  K  G  Y  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0146A12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8085" stop="8138"/>
                    <exon start="8214" stop="8303"/>
                    <exon start="8390" stop="8569"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNHHRSSQLPTLCQEVSEIREEALQYSSSHITVLPCERGRSCYYWTVQAFIQNREVQCLEGDSGWFWWWREESFHWNVMCFSISNFVSCRNIMSKRFYVLLSCFFKF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0146A12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8083" stop="8138"/>
                    <exon start="8214" stop="8303"/>
                    <exon start="8390" stop="8480"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVTIGQCRPLSKTVRFNVLKVIPAGSGGGGKKAFTGM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="11583" PGL_stop="12423"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11583" e_stop="11643"/>
            <exon e_start="11731" e_stop="11801"/>
            <exon e_start="11885" e_stop="12423"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.000" e_score="0.967"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="11583" e_stop="11643" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.000">
            <gDNA_intron_boundary i_start="11644" i_stop="11730" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11731" e_stop="11801" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="11802" i_stop="11884" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="11885" e_stop="12423" e_length="539"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11583" stop="11643"/>
              <exon start="11731" stop="11801"/>
              <exon start="11885" stop="12423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337651" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATGGAATGGTGCTTTGTCTCACTTTTGCAAGCTTTGCACTGGCCTCTTCGATTTTTGAT : AATAATCTTCTGCTGCTGTATTTGACAACTCTGAGTTGGATGCTAAACAACTTTGATTTCTTCTCCCATAG : CCTTGCAGATGACACTTGCTCAGCTTTGAAGGACTTTCAACGGAATCCTCAAAACAATATCTTGCAAATTATACTTCAAAGTGAAAAAACAAAAACTTCTGACAAAACATTAGAGCATATTGGCCACACGGTTCCTAATTTCATTACTCAGGTATTGTTATCTATAATATCCAAGAAACATGGACAGGAGCTTACATATATTCTCTTAGCTTTACTAAGACAATTATATTTTTTTCGTGTTTTCGATTATCAGCTAAATTCCAAGCTGACAGAGATACAAGGATTAGGATTAAATGATATGAGGGAAAATAGCGTCGGAAAAATTTGTGACCCCTTCTCCAGTGCACCTAATTACAACTTCACACCTGATCTCTGCCCAAAGGATATTATTCCAATTGAAGAACTAAAATATTTAAGTTACAAGCTTCAATTTACTCAACATGAATAAGGATCTTTATGTCTGAAAAGTTGGAGTTTGTTTTTTCTTATGTTTGCCTGTAGGTTCTGTCAAGAGTCAAATGTTATAAAGGAAATTCTTT</gDNA_template>
            <first_frame> *  W  N  G  A  L  S  H  F  C  K  L  C  T  G  L  F  D  F  *   : *  *  S  S  A  A  V  F  D  N  S  E  L  D  A  K  Q  L  *  F  L  L  P  *  :  P  C  R  *  H  L  L  S  F  E  G  L  S  T  E  S  S  K  Q  Y  L  A  N  Y  T  S  K  *  K  N  K  N  F  *  Q  N  I  R  A  Y  W  P  H  G  S  *  F  H  Y  S  G  I  V  I  Y  N  I  Q  E  T  W  T  G  A  Y  I  Y  S  L  S  F  T  K  T  I  I  F  F  S  C  F  R  L  S  A  K  F  Q  A  D  R  D  T  R  I  R  I  K  *  Y  E  G  K  *  R  R  K  N  L  *  P  L  L  Q  C  T  *  L  Q  L  H  T  *  S  L  P  K  G  Y  Y  S  N  *  R  T  K  I  F  K  L  Q  A  S  I  Y  S  T  *  I  R  I  F  M  S  E  K  L  E  F  V  F  S  Y  V  C  L  *  V  L  S  R  V  K  C  Y  K  G  N  S   </first_frame>
            <second_frame>  N  G  M  V  L  C  L  T  F  A  S  F  A  L  A  S  S  I  F  D  :  N  N  L  L  L  L  Y  L  T  T  L  S  W  M  L  N  N  F  D  F  F  S  H  S :   L  A  D  D  T  C  S  A  L  K  D  F  Q  R  N  P  Q  N  N  I  L  Q  I  I  L  Q  S  E  K  T  K  T  S  D  K  T  L  E  H  I  G  H  T  V  P  N  F  I  T  Q  V  L  L  S  I  I  S  K  K  H  G  Q  E  L  T  Y  I  L  L  A  L  L  R  Q  L  Y  F  F  R  V  F  D  Y  Q  L  N  S  K  L  T  E  I  Q  G  L  G  L  N  D  M  R  E  N  S  V  G  K  I  C  D  P  F  S  S  A  P  N  Y  N  F  T  P  D  L  C  P  K  D  I  I  P  I  E  E  L  K  Y  L  S  Y  K  L  Q  F  T  Q  H  E  *  G  S  L  C  L  K  S  W  S  L  F  F  L  M  F  A  C  R  F  C  Q  E  S  N  V  I  K  E  I  L  </second_frame>
            <third_frame>   M  E  W  C  F  V  S  L  L  Q  A  L  H  W  P  L  R  F  L  I :   I  I  F  C  C  C  I  *  Q  L  *  V  G  C  *  T  T  L  I  S  S  P  I   : A  L  Q  M  T  L  A  Q  L  *  R  T  F  N  G  I  L  K  T  I  S  C  K  L  Y  F  K  V  K  K  Q  K  L  L  T  K  H  *  S  I  L  A  T  R  F  L  I  S  L  L  R  Y  C  Y  L  *  Y  P  R  N  M  D  R  S  L  H  I  F  S  *  L  Y  *  D  N  Y  I  F  F  V  F  S  I  I  S  *  I  P  S  *  Q  R  Y  K  D  *  D  *  M  I  *  G  K  I  A  S  E  K  F  V  T  P  S  P  V  H  L  I  T  T  S  H  L  I  S  A  Q  R  I  L  F  Q  L  K  N  *  N  I  *  V  T  S  F  N  L  L  N  M  N  K  D  L  Y  V  *  K  V  G  V  C  F  F  L  C  L  P  V  G  S  V  K  S  Q  M  L  *  R  K  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0146A12.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11584" stop="11643"/>
                    <exon start="11731" stop="11801"/>
                    <exon start="11885" stop="12332"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NGMVLCLTFASFALASSIFDNNLLLLYLTTLSWMLNNFDFFSHSLADDTCSALKDFQRNPQNNILQIILQSEKTKTSDKTLEHIGHTVPNFITQVLLSIISKKHGQELTYILLALLRQLYFFRVFDYQLNSKLTEIQGLGLNDMRENSVGKICDPFSSAPNYNFTPDLCPKDIIPIEELKYLSYKLQFTQHE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="42154" PGL_stop="42866"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42154" e_stop="42866"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="42154" e_stop="42866" e_length="713"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42154" stop="42866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGAAAAATCGGCGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCTACCATCACCCCATCCTTCGAAACCACATGCCCCTAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCTGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTAGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATCTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGAGGAAGAGGATACTTGTTCTTAACCGTTACCTTATTTAGTTGTCTGTAGTCTATGCACATTCGAAAGCTGCCATCCTTTTTCTTCACAAATAATACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGCTTAGCAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGA</gDNA_template>
            <first_frame> E  S  L  E  K  S  A  V  I  A  S  *  T  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  Y  H  H  P  I  L  R  N  H  M  P  L  E  G  H  C  I  *  P  K  L  T  L  G  E  F  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  E  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  A  H  E  S  S  R  G  I  R  K  T  K  R  H  Y  Y  K  F  V  M  P  I  P  S  S  K  S  S  L  W  H  I  R  C  P  Y  L  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  I  I  N  A  R  K  R  I  L  V  L  N  R  Y  L  I  *  L  S  V  V  Y  A  H  S  K  A  A  I  L  F  L  H  K  *  Y  R  S  T  P  R  R  C  T  W  S  N  K  A  F  A  *  Q  L  L  K  L  C  L  *  L  S  *  L  C   </first_frame>
            <second_frame>  N  P  L  K  N  R  R  *  *  L  A  K  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  F  E  T  T  C  P  *  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  M  N  T  I  T  K  R  S  R  Y  G  L  K  I  L  F  I  K  L  M  K  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  L  T  V  T  L  F  S  C  L  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  N  T  G  A  P  Q  G  D  A  L  G  L  I  K  P  L  L  S  N  S  *  S  C  A  F  N  S  L  N  S  A  </second_frame>
            <third_frame>   I  P  *  K  I  G  G  N  S  *  L  N  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  L  P  S  P  H  P  S  K  P  H  A  P  R  R  T  L  H  L  A  K  T  H  T  W  R  I  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  Q  R  D  P  D  M  A  *  K  S  C  S  S  S  S  *  K  Q  Q  G  H  S  *  D  Q  K  T  L  L  Q  I  R  N  A  H  T  *  F  E  K  Q  S  L  A  H  P  L  P  V  S  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  N  H  Q  C  E  E  E  D  T  C  S  *  P  L  P  Y  L  V  V  C  S  L  C  T  F  E  S  C  H  P  F  S  S  Q  I  I  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  L  A  T  L  E  V  V  P  L  T  L  L  T  L  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0146A12.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42418" stop="42657"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINEYDHKEIQIWLKNPVHQAHESSRGIRKTKRHYYKFVMPIPSSKSSLWHIRCPYLQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0146A12.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42350" stop="42547"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSMNTITKRSRYGLKILFIKLMKAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="43146" PGL_stop="43476"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43146" e_stop="43476"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="43146" e_stop="43476" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43146" stop="43476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTGGATAATGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCATAAAAGTTACAAGACAAGACCTATGCACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGCGGAAGATACATATGAAAATGTAGAGCCAGGGTCAAATAATACAGAAGCCATACAATCACAAACCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  I  M  S  Q  F  *  H  Y  N  P  R  L  Q  N  L  E  K  A  K  S  Y  P  E  L  H  R  S  Q  P  F  L  R  *  P  S  L  H  E  Y  C  S  P  *  K  L  Q  D  K  T  Y  A  P  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  *  D  H  *  Q  M  R  K  I  H  M  K  M  *  S  Q  G  Q  I  I  Q  K  P  Y  N  H  K  P  </first_frame>
            <second_frame>  I  C  P  R  L  G  *  C  H  S  F  S  I  T  I  Q  D  C  K  I  W  R  K  P  S  H  T  Q  N  Y  I  E  V  N  H  F  *  D  N  Q  V  Y  M  S  I  A  P  H  K  S  Y  K  T  R  P  M  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  F  T  M  *  I  K  T  I  S  K  C  G  R  Y  I  *  K  C  R  A  R  V  K  *  Y  R  S  H  T  I  T  N  Q </second_frame>
            <third_frame>   S  V  P  G  L  D  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  I  K  V  T  R  Q  D  L  C  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  P  L  A  N  A  E  D  T  Y  E  N  V  E  P  G  S  N  N  T  E  A  I  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0146A12.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43277" stop="43474"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPIKVTRQDLCTFSTITDSPTGVETRIGMSSNSQCKLRPLANAEDTYENVEPGSNNTEAIQSQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="44793" PGL_stop="44243"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44793" e_stop="44243"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="44793" e_stop="44243" e_length="551"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44793" stop="44243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATACTAGGGCGGTTACTCCTCCACCGACTGAGGAAAATGAACAAGGGGAGGGTGGGGAAAATGAAAAAGTACAGAATGAGGAATTACCACCCTAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGTCTAACTACGGGGCCTGTAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGCGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACCGAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  Y  *  G  G  Y  S  S  T  D  *  G  K  *  T  R  G  G  W  G  K  *  K  S  T  E  *  G  I  T  T  L  T  Y  P  R  D  D  Q  S  G  S  C  L  S  *  R  V  I  *  S  R  P  S  T  S  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  G  Y  C  G  S  P  H  G  C  L  I  G  N  R  H  I  S  S  S  N  Y  G  A  C  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  R  *  I  G  G  C  L  *  F  S  G  *  L  S  R  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  N  E  Q  G  E  G  G  E  N  E  K  V  Q  N  E  E  L  P  P  *  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  A  P  Q  A  P  E  V  Q  H  A  A  T  V  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  G  P  V  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  R  L  L  L  H  R  L  R  K  M  N  K  G  R  V  G  K  M  K  K  Y  R  M  R  N  Y  H  P  N  L  P  Q  R  *  S  I  R  F  L  L  I  L  A  G  Y  L  I  K  A  K  H  L  Q  C  F  L  H  Q  H  L  R  L  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  P  H  W  K  *  A  H  F  L  V  *  L  R  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  A  L  N  R  R  M  L  M  I  F  W  L  T  V  T  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  P  R  H  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0146A12.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44684" stop="44244"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTPEMINQVLAYLSGLSDQGQAPPVFSAPAPQAPEVQHAATVAPRMDASLEIGTFPRLTTGPVMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVTYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="53255" PGL_stop="52870"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53255" e_stop="52870"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="53255" e_stop="52870" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53255" stop="52870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346850" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAAAATGGAGGCTTGTAGACGATTTCTTCTTCATCGTCCTCCTCAATTACTTCACAGCCGGGGCCACTGTTATCTGCTCCCTGATCACGGGCGAGGTATTTTCCGCCCTTTGAGTTGCTATGGGTCTCCAATTCCTCGTCGAGTGCCGCACTTCTGGCCGACAACACGGCAGTCTCAATATCTATCTTCGCTTCTCTCGCCTTTCCTTCGTGTATCTCCAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTTTGGTTTCCATCTCAACCTCCTACTTTCTTTTTATCTGCGATGCCAGATCTTCATCCAAGGTCGTGACCACAGCTTTGTAGATCGTCGTGGTCATGTCTACCTTAAGTCCTTCCTCTTTAATCTTCTGAATTT</gDNA_template>
            <first_frame> R  K  W  R  L  V  D  D  F  F  F  I  V  L  L  N  Y  F  T  A  G  A  T  V  I  C  S  L  I  T  G  E  V  F  S  A  L  *  V  A  M  G  L  Q  F  L  V  E  C  R  T  S  G  R  Q  H  G  S  L  N  I  Y  L  R  F  S  R  L  S  F  V  Y  L  Q  T  K  Q  V  Q  P  F  P  *  A  F  G  F  H  L  N  L  L  L  S  F  Y  L  R  C  Q  I  F  I  Q  G  R  D  H  S  F  V  D  R  R  G  H  V  Y  L  K  S  F  L  F  N  L  L  N   </first_frame>
            <second_frame>  E  N  G  G  L  *  T  I  S  S  S  S  S  S  S  I  T  S  Q  P  G  P  L  L  S  A  P  *  S  R  A  R  Y  F  P  P  F  E  L  L  W  V  S  N  S  S  S  S  A  A  L  L  A  D  N  T  A  V  S  I  S  I  F  A  S  L  A  F  P  S  C  I  S  K  R  S  K  F  N  L  F  L  R  L  L  V  S  I  S  T  S  Y  F  L  F  I  C  D  A  R  S  S  S  K  V  V  T  T  A  L  *  I  V  V  V  M  S  T  L  S  P  S  S  L  I  F  *  I  </second_frame>
            <third_frame>   K  M  E  A  C  R  R  F  L  L  H  R  P  P  Q  L  L  H  S  R  G  H  C  Y  L  L  P  D  H  G  R  G  I  F  R  P  L  S  C  Y  G  S  P  I  P  R  R  V  P  H  F  W  P  T  T  R  Q  S  Q  Y  L  S  S  L  L  S  P  F  L  R  V  S  P  N  E  A  S  S  T  F  S  L  G  F  W  F  P  S  Q  P  P  T  F  F  L  S  A  M  P  D  L  H  P  R  S  *  P  Q  L  C  R  S  S  W  S  C  L  P  *  V  L  P  L  *  S  S  E  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0146A12.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53253" stop="52936"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMEACRRFLLHRPPQLLHSRGHCYLLPDHGRGIFRPLSCYGSPIPRRVPHFWPTTRQSQYLSSLLSPFLRVSPNEASSTFSLGFWFPSQPPTFFLSAMPDLHPRS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0146A12.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53170" stop="52922"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRARYFPPFELLWVSNSSSSAALLADNTAVSISIFASLAFPSCISKRSKFNLFLRLLVSISTSYFLFICDARSSSKVVTTAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="60156" PGL_stop="60949"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60156" e_stop="60949"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="60156" e_stop="60949" e_length="794"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60156" stop="60895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60215" stop="60949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325967" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATTTGATACGGGTGCCGCCTCACAAACTTAATGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCAGTCCTATAGAGCCAGTCGCTTCCAATGGGCACAGATTCGTTTTGGTTGCCATCGATTATTTCACCAAGTGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATCACTGATAAGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATTCACCGGAGGTCAACTTCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAAAAGATTCTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATGTTGCCATGCGCTCTACTAGGTTATCGAACAACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATATGGAGTAGAAGCAGTCGTGCCTGTTGAAGTCGAGATACCGTCATTAAGGATCATCCAAGAAGCTGAGTTAAGCAACGCTGAGTGGGTTAGAAAACGGATGGATCAACTAGCTTTGATTGATGAGAAGAGAATGGTCGCCGTCTGTCATGGCCAGTTGTATAGACAGAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCAAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGACGAGCACAAAGGAAAGTTCGCACCAAACTG</gDNA_template>
            <first_frame> *  F  D  T  G  A  A  S  Q  T  *  C  Y  E  F  T  L  A  I  C  S  L  G  N  G  C  H  Q  S  Y  R  A  S  R  F  Q  W  A  Q  I  R  F  G  C  H  R  L  F  H  Q  V  G  G  S  S  L  L  Q  I  G  N  Q  E  S  G  G  R  F  C  P  Q  Q  S  D  M  Q  I  W  S  S  R  I  H  H  H  *  *  G  A  N  L  N  S  H  L  M  K  E  I  C  E  Q  F  K  I  I  H  R  R  S  T  S  Y  R  P  Q  M  N  G  A  V  E  A  A  N  K  N  I  K  K  I  L  R  K  M  I  D  K  Q  R  G  W  H  E  M  L  P  C  A  L  L  G  Y  R  T  T  V  R  T  S  T  G  A  T  P  Y  L  L  V  Y  G  V  E  A  V  V  P  V  E  V  E  I  P  S  L  R  I  I  Q  E  A  E  L  S  N  A  E  W  V  R  K  R  M  D  Q  L  A  L  I  D  E  K  R  M  V  A  V  C  H  G  Q  L  Y  R  Q  R  M  T  R  A  F  H  K  R  V  R  A  R  N  F  E  V  G  Q  L  V  L  K  R  I  F  P  H  Q  D  E  H  K  G  K  F  A  P  N   </first_frame>
            <second_frame>  D  L  I  R  V  P  P  H  K  L  N  A  M  S  S  P  W  P  F  V  A  W  G  M  D  V  I  S  P  I  E  P  V  A  S  N  G  H  R  F  V  L  V  A  I  D  Y  F  T  K  W  V  E  A  A  S  Y  K  S  V  T  K  K  V  V  A  D  F  V  R  N  N  L  I  C  R  F  G  V  P  E  S  I  I  T  D  K  V  Q  I  S  T  V  I  *  *  K  R  Y  V  N  N  L  R  L  F  T  G  G  Q  L  L  I  A  L  K  *  T  E  L  *  R  P  P  T  R  T  S  K  R  F  *  G  K  *  L  T  S  S  E  V  G  M  K  C  C  H  A  L  Y  *  V  I  E  Q  R  S  E  H  R  L  G  L  L  H  T  C  *  Y  M  E  *  K  Q  S  C  L  L  K  S  R  Y  R  H  *  G  S  S  K  K  L  S  *  A  T  L  S  G  L  E  N  G  W  I  N  *  L  *  L  M  R  R  E  W  S  P  S  V  M  A  S  C  I  D  R  E  *  L  A  L  F  T  K  E  *  E  Q  E  I  L  K  L  V  S  W  F  L  S  V  F  F  L  I  K  T  S  T  K  E  S  S  H  Q  T  </second_frame>
            <third_frame>   I  *  Y  G  C  R  L  T  N  L  M  L  *  V  H  L  G  H  L  *  L  G  E  W  M  S  S  V  L  *  S  Q  S  L  P  M  G  T  D  S  F  W  L  P  S  I  I  S  P  S  G  W  K  Q  P  L  T  N  R  *  P  R  K  W  W  P  I  L  S  A  T  I  *  Y  A  D  L  E  F  Q  N  P  S  S  L  I  R  C  K  S  Q  Q  S  S  D  E  R  D  M  *  T  I  *  D  Y  S  P  E  V  N  F  L  S  P  S  N  E  R  S  C  R  G  R  Q  Q  E  H  Q  K  D  S  E  E  N  D  *  Q  A  A  R  L  A  *  N  V  A  M  R  S  T  R  L  S  N  N  G  Q  N  I  D  W  G  Y  S  I  L  A  S  I  W  S  R  S  S  R  A  C  *  S  R  D  T  V  I  K  D  H  P  R  S  *  V  K  Q  R  *  V  G  *  K  T  D  G  S  T  S  F  D  *  *  E  E  N  G  R  R  L  S  W  P  V  V  *  T  E  N  D  S  R  F  S  Q  K  S  K  S  K  K  F  *  S  W  S  V  G  S  *  A  Y  F  S  S  S  R  R  A  Q  R  K  V  R  T  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0146A12.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60417" stop="60947"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GANLNSHLMKEICEQFKIIHRRSTSYRPQMNGAVEAANKNIKKILRKMIDKQRGWHEMLPCALLGYRTTVRTSTGATPYLLVYGVEAVVPVEVEIPSLRIIQEAELSNAEWVRKRMDQLALIDEKRMVAVCHGQLYRQRMTRAFHKRVRARNFEVGQLVLKRIFPHQDEHKGKFAPN</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0146A12.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60157" stop="60441"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLIRVPPHKLNAMSSPWPFVAWGMDVISPIEPVASNGHRFVLVAIDYFTKWVEAASYKSVTKKVVADFVRNNLICRFGVPESIITDKVQISTVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 65 chains have been computed
$ 
$ memory statistics:
$ 19848 bytes spliced alignments in total
$ 9 spliced alignments have been stored
$ 2205 bytes was the average size of a spliced alignment
$ 12712 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 1816 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 80 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 14:24:49
-->
