<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 14:24:53"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="+" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="3539" stop="4540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3839" g_stop="4241" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="+" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3839" e_stop="4241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATATATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTTTATAATTGTGGTTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAACCCTAATCTCTTTGTTAATGATGGGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATAGGGTGTCACGAACCGACACGTAGATTTA-GGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACTGACACG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGA-TTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298638" ref_strand="+" ref_description="SGN-E298638 [cLET-44-A20]">
      <seq>tcattacatcggatttcagggtgagctaacgcttctagcttggactggatcttcttcttcatgtcttgatgccttgaagttccggcatggactagctgtttatgtattttagcttcttagatactcttagatttagtaatttgaagtacatgttcttgtgatgatgactgccagattttggggataataatagttgttgagtttttagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="+" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="4465" stop="5272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4765" g_stop="4968" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="207" polyA_stop="219"/>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="+" ref_id="SGN-E298638" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>204</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4765" e_stop="4968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTACTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGTCTTGATGCTTTGAAGTTCCGGCATGGACTAGCT-TTTATGTATTTTTAGCTTCTTAGAAACTCTTAGATTTAGTAGTTTGAAGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATATTTATTGATTTT</genome_strand>
        <mrna_strand>TCATTACATCGGATTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTGTTTATGTA-TTTTAGCTTCTTAGATACTCTTAGATTTAGTAATTTGAAGTACATGTTCTTGTGATGATGACTGCCAGATTTTGGGGATAATAATAGTTGTTGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 [cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="7138" stop="5749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6838" g_stop="6049" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6838" e_stop="6049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATCAAACAATACAGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCGTTTTTCCCATCACCTCGGCCGTTTTGGTGACCACCATTACCCCGACCACCACGTCCTCAAGAATAACGGCCTCTACCACGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGTAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTACGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGACATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTACCGTAGCTGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCACTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTGCGGGGTATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="+" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="5805" stop="24092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6105" g_stop="6277" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6278" i_stop="7021" i_length="744">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7022" g_stop="7549" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="+" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="6105" e_stop="6277"/>
          <exon e_start="7022" e_stop="7549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACCCAACTTTGTTTCAGTCCACAAGAGTGGATTCGTCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCAGCTACGGTAAAATCCTTCCAAGAAGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACCATGTCATCGACATCAAAGAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGTAGGTTACTCAGTTCGACCCATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTACTCTGAGAGACCTATGCTTGACTCCAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCGTGGTAGAGGCCGTTATTCTTGAGGACGTGGTGGTCGGGGTAATGGTGGTCACCAAAACGGCCGAGGTGATGGGAAAAACGGAGCCACTACATCACAACATGGTAGGGGCAATGGACAGACAAATGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTAGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAACGGTCTAAATTTATATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTTTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGAATTTTGCGATCTTGGATTGTAATGCTAAAACTCTGACGTTAGCCAAGCCTGAGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACCACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGACACCAAATAGGGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATTGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAGGGTTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCTGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353805" ref_strand="+" ref_description="SGN-E353805 [cTOS-10-C24]">
      <seq>ggatcaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctaaagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="7136" stop="6003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6836" g_stop="6303" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E353805" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6836" e_stop="6303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCAAACAATACAGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCGTTTTTCCCATCACCTCGGCCGTTTTGGTGACCACCATTACCCCGACCACCACGTCCTCAAGAATAACGGCCTCTACCACGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGTAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTACGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGACATGGTGAATTCATCTGGCTTCACTCCTTCC</genome_strand>
        <mrna_strand>GGATC-AACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAAAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="7429" stop="6503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7129" g_stop="6799" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7129" e_stop="6799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCTCAGGCTTGGCTAACGTCAGAGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCAAAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATATAAATTTAGACCGTTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACTAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="7901" stop="6643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7601" g_stop="6943" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7601" e_stop="6943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACAGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCCTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCAATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATTTGGTGTCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTGGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCTCAGGCTTGGCTAACGTCAGAGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCAAAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="8350" stop="7072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8050" g_stop="7371" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8050" e_stop="7371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCTATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATTTTCCTCCCTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAACCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGATATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAGCCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACAGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCCTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCAATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="8421" stop="7109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8121" g_stop="7409" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8121" e_stop="7409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCTATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATTTTCCTCCCTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAACCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGATATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAGCCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACAGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCCTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="8421" stop="7226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8121" g_stop="7526" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8121" e_stop="7526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCTATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATTTTCCTCCCTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAACCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGATATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAGCCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="8421" stop="7296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8121" g_stop="7596" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8121" e_stop="7596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCTATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATTTTCCTCCCTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAACCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGATATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAGCCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="8350" stop="7392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8050" g_stop="7692" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8050" e_stop="7692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCTATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATTTTCCTCCCTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAACCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGATATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353207" ref_strand="+" ref_description="SGN-E353207 [cTOS-14-B13]">
      <seq>tcggcatgtactgttttccaaaacttagaagtaaattgcgtacctctatctgatatgatggagagtggaactccgtgcaatcgaacaatttctaagatgtaaagtttggctaacttctctgcattgtaagtcaccttaaccgaaatagagtgagcagacttagttaatctgtcaacaatcacccaaatagagtcatacctacccatcgtctttggatgactaaccacgaagtccattgcaattctctcccacttccattcaggaatgggcattctctgaagtgtccctccaggcctctggtgttcatactttacttgctgacaattcgggcattgagcaacaaaattaacaatgtcacgcttcatcctactccaccaaaaatgttgctttaggtcacgatacatcttgtttgcaccaggatgtatagagtacttcgaactatgagcctatataagaatagtgtgaatcaaatcatcgacgcggggtacacatactccttcccttattctcaaaacaccttcctcatcgatttttgcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="+" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="11559" stop="12700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11859" g_stop="12400" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="+" ref_id="SGN-E353207" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11859" e_stop="12400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGAAAGTGGAACTCCATGCAATCGAACAATTTCTGAGATGTAAATTTTGGCTAACTTCTCTGCATTATAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAATCTGTCCACAATTACCCAAATAGAGTCAAACTTCCCCAATGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTCTGGTGGTCATACTTTACTTGCTGACAATTTGGACATTTGGCAACAAAATCCACAATGTCGCGCTTCATCCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCAGGATGTATAGAATATCTGGAACTATGAGCCTCTGTAAGAATAGTATGGATCAAATCATCAACACGGGGCACACATACTCATCCCTTAATTCTCAAAACACCTTCCTCATGCATTATTGCTTCTTT</genome_strand>
        <mrna_strand>TCGGCATGTACTGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCGTGCAATCGAACAATTTCTAAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGAAATAGAGTGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACCTACCCATCGTCTTTGGATGACTAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATTAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGTTTGCACCAGGATGTATAGAGTACTTCGAACTATGAGCCTATATAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACTCCTTCCCTTATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="+" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="12818" stop="14130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13118" g_stop="13830" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13118" e_stop="13830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTAACAAATCGACGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTTTGACACATTAGTAGGTATTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACATTGCATCTAGCCAAAACTCACACTTGGAGAATTTTGCATAAAGC-TTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATATTCCTTCTTGCTCTTTAAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCTAGATATGGCTTAAAAATCCCATTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTCCGAAAAAGCAGTCTTTGGCACATCCGTTGCCCGCATTTTCAATTGATGATAACCGGACCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGTTCTTAATTGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGAGAAGCACTTGGTCTAATGAATCCTTCGCTCAACAACTCTTGAAGTTGGGCATTTAACTCTCTCAACTCCGTGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTC-TAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="+" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="12818" stop="14013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13118" g_stop="13713" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13118" e_stop="13713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTAACAAATCGACGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTTTGACACATTAGTAGGTATTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACATTGCATCTAGCCAAAACTCACACTTGGAGAATTTTGCATAAAGC-TTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATATTCCTTCTTGCTCTTTAAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCTAGATATGGCTTAAAAATCCCATTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTCCGAAAAAGCAGTCTTTGGCACATCCGTTGCCCGCATTTTCAATTGATGATAACCGGACCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGTTCTTAATTGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTC-TAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="+" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="12818" stop="13943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13118" g_stop="13643" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13118" e_stop="13643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTAACAAATCGACGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTTTGACACATTAGTAGGTATTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACATTGCATCTAGCCAAAACTCACACTTGGAGAATTTTGCATAAAGC-TTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATATTCCTTCTTGCTCTTTAAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCTAGATATGGCTTAAAAATCCCATTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTCCGAAAAAGCAGTCTTTGGCACATCCGTTGCCCGCATTTTCAATTGATGATAACCGGACCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTC-TAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="+" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="12889" stop="14168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13189" g_stop="13869" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13189" e_stop="13869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACATTGCATCTAGCCAAAACTCACACTTGGAGAATTTTGCATAAAGC-TTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATATTCCTTCTTGCTCTTTAAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCTAGATATGGCTTAAAAATCCCATTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTCCGAAAAAGCAGTCTTTGGCACATCCGTTGCCCGCATTTTCAATTGATGATAACCGGACCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGTTCTTAATTGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGAGAAGCACTTGGTCTAATGAATCCTTCGCTCAACAACTCTTGAAGTTGGGCATTTAACTCTCTCAACTCCGTGGGAGCCATTCTATAAGAGGGATATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTC-TAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAG-GGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="+" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="13806" stop="14736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14106" g_stop="14436" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14106" e_stop="14436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACATCACAGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATAAAACAATACATAAGCAATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="+" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="14737" stop="16000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15037" g_stop="15700" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15037" e_stop="15700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGTGGACTGAAATAAAGTTGGGTGGCATACCTGGATAATGCACGAAACTTAGCCTCATATGCGGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTACGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGGAACTGATAAGTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAGGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCTGTAGTTAGACGAGGAAACATGTCTATTTCCAATGAGGCATCCATGCGGGGAGCCACAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGTAGAAAACACTGGAGGCGCTTGGCCTTGATCACATAACCCGCTAAGATAAGCAAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGTAATT-CCTCATTCTGTACTTGTTCATTTTCCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="16056" stop="14904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15757" g_stop="15204" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15757" e_stop="15204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTGGCCTATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTACAGAATGAGGAATTACCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATGTGATCAAGGCCAAGCGCCTCCAGTGTTTTCTACACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGACATGTTTCCTCGTCTAACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTCCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728374" ref_strand="+" ref_description="SGN-E728374 [LA17CE03]">
      <seq>agatgatcaaccaggttctttctcatcttagcgggttatctgatcagggccagacacctccagtgtttcctgtaccagcacctcaggttccgggagtacaacatgcagctgttgtggctctccgcatggatgcctcattggaaataggcacatttcctcgattgactacagggcctataatgacgagtgatcaacatgaacttttcactaaattcttgaagttgaaacctctagtcttcaagggtgctgaatctgaggatgcctatgattttcttgttgattgtcatgagctgctacataagatggacatagtagaacggttcggggttgagtttgtgacctatcaatttcagggaaatgtcaaaatgtggtggcggtcgtatgttgagtgtcaaccagcacagcaccacctatgacttgggcatcattctctagcttatttatggaaaagtgtataccccggacgttgagggataggaggagagatgagttcctgagtctatagcaaggcaggatgtctgttactgcttatgaggctaaattttgtgcactatccaggtatgccacccagctttgcttcagtccacaagagcggattcaccgttttgtgaaaggattgaggtcagatttgcagatcccagccctacaggtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="+" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="21509" stop="22750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21809" g_stop="22462" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="+" ref_id="SGN-E728374" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21809" e_stop="22462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGATCAACCAGGTTCTTACTTATCTTAGCGGGTTATCTGATCGAGGCCAGACACCTCCAGTGTTTCTTGTACCAGCACCTCAGGTTCCAGGAGTACAACATGCAACTGTTGTGGCTCCCCGCATGGATGCCTCATTGGAAGTAGGCACGTTTCCTCGATTGACTACAGGGTCTATAATGACAAGTGATCAACATGAACTTTTCACTAAATTCTTAAAGTTGAAACCTCCTGTCTTCAAGGGTGCTAAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGATTCGGTGTTGATTTTGTGACCTACCAGTTTCAGGGGAATGCCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACAGGCACCACCTATGACTTGGGAATCATTCTCTAGCTTATTTATGGAGAAGTATATACCCCGGACTTTGAGGGATAGGAGGAGAGATGAGTTCTTGAGCCTATAGCAAGGAAGGATGTCTGTTGCCGCTTATGAGGCCAAATTTCGTGCGCTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCATAAGAGCGGATTCGCCGCTTTGTGAAAGGATTGAGGTTAGATTTGCAGATCCCAG--TTACAGGTAGCT</genome_strand>
        <mrna_strand>AGATGATCAACCAGGTTCTTTCTCATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCTCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAACATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTTGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGGTTCGGGGTTGAGTTTGTGACCTATCAATTTCAGGGAAATGTCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACA-GCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAAAAGTGTATACCCCGGACGTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGTCTATAGCAAGGCAGGATGTCTGTTACTGCTTATGAGGCTAAATTTTGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCCTACAGGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242359" ref_strand="-" ref_description="SGN-E242359 [cLEE-3-K21]">
      <seq>agtatgtattaagcaatatcataaaattaactaatatccttagcatgcagcatttgcaattaccataacccttggttgcatcaccaagcacatcaatgaggactcacacctcctcatcatacttatttgggaatttagttcattggattgcatatattaacatatttcaagattcatcatatttattcccctcgtgtccttacgtgacactccactcctcaatatactatcctggcaccggaacgtggcacccgatccatattctatcctggtgtcagaacgtgacacccgatccatattctatcctggtgtcggaacgtgacacccgatccatattctatcctggtaccggaacgtggcacccgatccatattctatcctggtgtcggaacgtgacacccgatccatattctatcctggtaccggaacgtggcacccgatcccctaatctcaccactttcgttcatcaagccttcttttataccaaggcatcattattaacaaagtagattagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="38726" stop="30545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38426" g_stop="38193" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38192" i_stop="38115" i_length="78">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38114" g_stop="38054" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="295" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38053" i_stop="31065" i_length="6989">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31064" g_stop="30845" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="515" r_length="220" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E242359" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38426" e_stop="38193"/>
          <exon e_start="38114" e_stop="38054"/>
          <exon e_start="31064" e_stop="30845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATGTATTAAGCAATATCATAAAATCAATTAATATCCTTAGCATGCAGCATTTACAGTTACCATAACCCTTGGTTACAACACCAAGCACATCAATGAGGACTCACACCTCCTCATCACACTCATTTGGGAATTTAGTTCATTAGATTGGATATATTAACATATTTCAAGATTCATTATCTTTATTCCCCTCGTGTCGGTACATGACACTCCGCTCCTCAATATACTATCCTGGTGTCGGAACGTGACACTCTGATCCTCATTCTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGTACCCGATCCATATTCTATCCTGGTGTCAGAACGTGACACCCGATCCATATCCTATCCTGGTACCGGAACGTGGCACCCGATCAATATTCTATCTTGGTGTCGGAACGTGACACCCGATCCATATTCTATCCTGGTACCGAAACGTGGCACCGGATCCCCTAATCTCATCACTTTCGTTCATCAAGCCTTCTTTTATACCAAGGCATCATCATTAACAAAGTAGATTAGGGTTTCTTTTCAAGATTTGGGATTCAATGGCTTCATCATACTTATTTATTCACAATTACATAATCACATCATTCATGCAAGCATACAATTAAGCATATAGAAGGTTTACAATACTACTAACACATATCATTCGCTATTAAGAGTTTGCTACGAATAGCATGAAATAACCATAACCTACCTCCACTGAAGATTAGTGATTAAGCAAGAAATTCCCAAGGCTTTTGTTCCTTCTTCTCGTTCGATCCTCCCTCAATTCGTTTCTCTTTCCCTCTCTTTGTTCTTTCTATTTTCTTATTCCAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGACAATAATACCCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGGATTTTGAGTTATTAATATAAACCCATGAAATATATAATCATAGCAGGAATAGTCCAAAACGCCCCTTTAAAACTTAACCAGAAATCTGACTCCAACTGGGATTGCGCAACCTGTGACGGGCCGTCGTGCCTGGGACGGTCCGTCCTGCAGGTCGTCGCAAAGTTCAGAGACCCAATATTTCCACCAAGGGTCTGTGACGGTCCGTCACACCTGTGACGGTCCGTCCTGCCATTCCGTCACGAAGTTCAGAGAGTCGATTTTCTGTACCCAATTTTAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCCGTCGTGCCCATGACGGTCCGTCATTGGGTTCGTCGCCTCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACAATAGATACCAATTTACCCATCGTTCGTCCCCGAACGATCACAAGAAGGAAAACAAGGGCGAAAAGGAGTACCTGAATCTGTAAACAGATGTGGGTATTTTTCTCGCATATCCGCCTCCTTCTCCCAAGTGGCTTCATCAACGGGTCGATTCTTCCATTGCACCTTGATGGATGCAATCTCTCTTGACCTCAACTTGCGAACTTCTCTATCTAAAATAGCAACAGGCTCCTCCTCATAAGACAAGTTCTCATCAAGCAAAACTGAATCCCAACGGATAATGTAATTTCCATTCCCATGATATCTTTTCAACATAGACACATGGAATACCGGATGTACTCCGGACAGCCCTGGAGGCAAGGCTAACTCATAAGCCACCTCTCCTACTCGCTTAAGTACTTCAAATGGTCCAATGTACCTTGGACTTAGTTTACCCCTTTTTCCGAACCGCATCACCCCTTTCATGGGCGAAACTTTCAACAAGACTTGTTCACCTTCCATGAACTCTAAGTCTCTAACCTTTCGATCTGCATATTCTTTTTGTCTACTTTGCGACGCTAACAACTTTTCTTGAATAGATTTCACTTTATCTAACGATTCTCTCAAAAGGTCAGTACCCCAAGGCCTAACCTCAAATGCATCAAACCAACCAATGGGAGACCTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATCTTCCAACACTTGAATCGTCCTTTCAGACTGACCATCGGTCTGAGGATGGAACGCAGTACTAAGGTCCAACCTAGTACCCAATTCTGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCCCTATCTGATATGATGGATAGTGGAACCCCATGCAATCGAACGATTTCTGAGATATAGATCTTGGCTAACTTCTCTGCATTGTAAGTCACCTTTACCGGAATGAAATGAGCAGATTTAGTTAACCTATCAACAATCACCCAAATGGAGTCATACTTACCCATTGTCCTTGGAAGACCAACCACAAAGTCCATTGCAATTCTTTCCCACTTCCATTCCGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTTTGGTGTTCATACTTTACTTGTTGACAGTTTGGACACTTGGCAATAAAGTCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGTTTTAGGTCACGATACATCTTGGTTGCACTTGGATGTATAGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATTAAATCATTGACGGGGTACACATACCCTTCCCTTGATTCTCAAAACACCTTCCTCATCGATTTGTGCTTCCTTAGCCTCTCCTCGCAATACCTTATCTTGGATTCTTCTTAGTTTCTCATCATCAAACTGTTTTCCCTTAATTTTGTCAAGAAAAGAAGATCTTGACTCCACACTAGCCAACAATCCTCCCTTCTCATTTACTTCTAATATCATCAAGTCATTAGCTAGAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGAAGCTTGCAAGTGAGCTAGACTTCCCATGCTTCCCACCTTTCTACTTAAAGCATCCGCTACAACATTAGCCTTCCCCGGATGATACAAAATAGTGATATCGTAGTCCTTTAGTAACTCCATCCATCTCCTCTGTCTTAAGTTCAAATCTTTCTGAGTAAAGACATACTGTAGGCTACGATGATCCGTATAGATCTCACACTTAACCCCATATAAATAGTGTCTCCATTGCTTTAATGCAAACACCACCGCAGCCAATTCCAAATCGTGGGTCGGATAGTTACGTTCATGCACCTTTAGTTGCCTTGAAGCATAAGCAATCACACTCTTCTCTTGCATTAGTACAACACCCAAACCAGAATAGGATGCATCACAATAAACAATGAAGTTCTTACCCTCTACTGGCAAGGTAAGGATAGGTGCGGTAGTCAACAAAGTCTTGAGCTTCTGAAAGCTTTCCTCACATTCGTCCGACCATACAAATGGAACATTCTGCTTAGTCAAGTTCGTCAATTGGGAAGCAATAGAAGAGAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAACAGGGGCGTTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAGCTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCTAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACTACTGAAACCGACTCAATCGAAGGCACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACAACCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATATGCACCGGATTGGAAGCGTTGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCTAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCTACAAAGTTCACCAAAAAAGACCTATACACCTTTTCAACTACCACAGATTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAGGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTAACTTGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTTGGCCGTTTTGGTTACCACCATTTCCTTGACCACCACGTCCTCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTTCGATCTCCCCACATCCATAACACTTTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCAATGTCGGGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCACTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATTCGCTCTTGTGGACTGAAACACAGTTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCATTACCTTGAAACTGATAACTTACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCCGCACCCTTGAATACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGTAGAAAACACTGGGGTGTCTGGCCCTGATCATATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCAGTTTCCCCATCGTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGCGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACTACCTCTACCATGGCCCCTTGCCGCTGTTCTTCCTCGAGCCACAGCCCCAGTGGTTGGCTCAGTTGTTTCTTGTCTGGCCGGTATTGGTGTTGGCGTAGTCGTTGCTCTAGTTCTAACCATCTGTGAAAGAGAGTGAAGATGGTCAGATACTAATTCGTATCGCCTAGATACCAATTGGACTCAAGTAGTAGCACGAAAGAAAGAATGAGAGAGTGAAATTTTCCTAAAGTCTTATAGCCTCTCAAGAAAAAGTAAAGGCGTCCCCCTACCGTTCCTTAAGACTCTACTAGACCTGTTCTTGTGTGATGAGACCAACGAACCTAATGCTCTGATACCAAGTTTGTCACGACCCAAATCCAGGCCACGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAATATAATATAACCAGAAAGTAATGCGGAAGACTTAAAATCATTAAATAAAGACCAATTCATTAACTTCTAAAATTCAACATCTATTATTCCCCCAAAATCTGGAAGTCATCATCACAAGAACATCTACGATCAAATGACTAAACTAAGAGTATTCTAAAAGCTAAAAATACATAAGAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACTTGAAGAAGAAGACCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAATATCCGGTATGACGAAGACTGGCTAGAATCACTGCTGAGTTGAAGATGACGGAACGTTTGCTGCACTCCACAAATAACAAGAAGAAAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAGTATGTATTAAGCAATATCATAAAATCAATTAATATCCTTAGCATGCAGCATTTACAGTTACCATAACCCTTGGTTACAACACCAAGCACATCAATGAGGACTCACACCTCCTCATCACACTCATTTGGGAATTTAGTTCATTAGATTGGATATATTAACATATTTCAAGATTCATTATCTTTATTCTCCTCGTGTCGGTACGTGACACTCCGCTCCTCAATATACTATCCTGGTGTCGGAACGTGACACTCTGATCCTCATTCTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCAGAACGTGACACCCGATCCATATCCTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCTTGGTGTCGGAACGTGACACCCGATCTATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACCACTTTCGTTCATCAAGCCTTCTTTTATACCAAGGCATCATCATTAACAAAGTAGATTAGG</genome_strand>
        <mrna_strand>AGTATGTATTAAGCAATATCATAAAATTAACTAATATCCTTAGCATGCAGCATTTGCAATTACCATAACCCTTGGTTGCATCACCAAGCACATCAATGAGGACTCACACCTCCTCATCATACTTATTTGGGAATTTAGTTCATTGGATTGCATATATTAACATATTTCAAGATTCATCATATTTATTCCCCTCGTGTCCTTACGTGACACTCCACTCCTCAATATACTATCCTG..............................................................................GCACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCAGAACGTGACACCCGATCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTATCCTGGTGTCGGAACGTGACACCCGATCCATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACACCCGATCCATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACCACTTTCGTTCATCAAGCCTTCTTTTATACCAAGGCATCATTATTAACAAAGTAGATTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242359" ref_strand="+" ref_description="SGN-E242359 [cLEE-3-K21]">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="+" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="30545" stop="31700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30845" g_stop="31098" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31099" i_stop="31148" i_length="50">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.46"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31149" g_stop="31400" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="515" r_length="261" r_score="0.853"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="+" ref_id="SGN-E242359" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30845" e_stop="31098"/>
          <exon e_start="31149" e_stop="31400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATAGATCGGGTGTCACGTTCCGACACCAAGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGGATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATGAGGATCAG-A--G-T---GT--CACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGAGAATAAAGATAATGAATCTTGAAATATGTTAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTGTGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAATTGATTTTATGATATTGCTTAATACATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAA..................................................TATGGATCGGGTGCCACGTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="+" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="30956" stop="31790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31256" g_stop="31490" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="+" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31256" e_stop="31490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACTAAATTCCCAAATGAGTGTGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAATTGATTTTATGATATTGCTTAATACATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTT-TCTTCTTGTTATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTATCTTCTTGTTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351546" ref_strand="+" ref_description="SGN-E351546 [cTOS-12-I18]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttggtatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacataggagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacaagtctagtagagtcttaaggaacggtagggggacgcttttacttttccttgagaggctataagactttaggaaaacttcactctttcattctttctttcgtgctactacttcgagtcaattggtatctaagcgatacgaattggtatctgaccatnctcactctcttgccagatgggtagaactagagcaacgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="+" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="4337" stop="32450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31416" g_stop="32150" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="+" ref_id="SGN-E351546" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31416" e_stop="32150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATG-TTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTTCCGTCATCTTCAACTCAGCAGTGATTCTAGCCAGTCTTCGTCATACCGGATATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGGTCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGT-A-TTTTTAGCTT-TTAGAATACTCTTAG-TTTAGTCATTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTCTTTATTTAATGATTTTAAGTCTTCCGCATTACTTTCTGGTTATATTATATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGTGGCCTGGATTTGGGTCGTGAC-AAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTTCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTCTCATTCTTTCTTTCGTGCTACTACTT-GAGTCCAATTGGTATCTAGGCGATACGAATTAGTATCTGACCATCTTCACTCTCTTTCACAGATGGTTAGAACTAGAGCAACGACT</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGGTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAA-ACTCTTAGAATTAGT-AGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTT--GGGAATAATAGATGTTTAATAATAGTAG-T--T--ATTGAT-TTTA-TTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTGGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCTTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAACTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTCGAGT-CAATTGGTATCTAAGCGATACGAATTGGTATCTGACCATNCTCACTCTCTTGC-CAGATGGGTAGAACTAGAGCAACGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356696" ref_strand="+" ref_description="SGN-E356696 [cTOS-21-K7]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttgttatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacatangagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacaagtctagtagagtcttaaggaacggtagggggacgcttttacttttccttgagaggctataagactttaggaaaacttcactctttcattctttctttcgtgctactacttgagtccaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="+" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="4337" stop="32375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31416" g_stop="32075" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="+" ref_id="SGN-E356696" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31416" e_stop="32075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATG-TTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTTCCGTCATCTTCAACTCAGCAGTGATTCTAGCCAGTCTTCGTCATACCGGATATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGGTCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGT-A-TTTTTAGCTT-TTAGAATACTCTTAG-TTTAGTCATTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTCTTTATTTAATGATTTTAAGTCTTCCGCATTACTTTCTGGTTATATTATATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGTGGCCTGGATTTGGGTCGTGAC-AAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTTCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTCTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTG</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAA-ACTCTTAGAATTAGT-AGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTT--GGGAATAATAGATGTTTAATAATAGTAG-T--T--ATTGAT-TTTA-TTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATANGAGGGTAAGTGTGGGTGCCAGTGGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCTTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAACTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392027" ref_strand="+" ref_description="SGN-E392027 [TUS-24-O2](-)">
      <seq>cagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggactggatcttcttcttcaagtcttgatgccttgaacttccggcatggactagcttcttatgtatttttagcttttagactactcttagtttagtcatttgatcgtagatgttcttgtggtgatgacttccagattttggggaataatagatgttgaattttagaagttaatgaattggtctgtatttaatgagtttaagtcttccacattactttctgttgatattatattgaaatgttaaggttagattggttggttcgctcacataggagggtaagtgtgggtgccagtcgcaacccggttttggtcgtgacaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacgagtctagtagagtcttaaggaacggtagggggatgcctttacttttccttgagaggctataagacttttggaaaattccattctttcttctttcgtgctattacttgggtccaattggtatctaggtgatacaaattggtatctgaccatcttcactctatttcgcagatggttagaactagagcaacgactacgccagcatcaacaccagcaccggcgggacagggtgcgactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="+" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="31196" stop="32481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31496" g_stop="32162" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="+" ref_id="SGN-E392027" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31496" e_stop="32162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAAACGTTCCGTCATCTTCAACTCAGCAGTGATTCTAGCCAGTCTTCGTCATACCGGATATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGGTCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGAATACTCTTAGTTTAGTCATTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTCTTTATTTAATGATTTTAAGTCTTCCGCATTACTTTCTGGTTATATTATATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGTGGCCTGGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTTCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTCTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTAGTATCTGACCATCTTCACTCTCTTTCACAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCA</genome_strand>
        <mrna_strand>CAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACT-ACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGACTACTCTTAGTTTAGTCATTTGATCGTAGATGTTCTTGTGGTGATGACTTCCAGATTTT-GGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTCTGTATTTAATGAGTTTAAGTCTTCCACATTACTTTCTGTTGATATTATATTGAAATGTTAAGG-TTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGG-TTTTGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTTGGAAAATTCCA-T-TCT--TTC-TTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAGCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="+" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="31623" stop="32508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31923" g_stop="32208" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="+" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31923" e_stop="32208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTTCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTCTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTAGTATCTGACCATCTTCACTCTCTTTCACAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAATACCGGCCAGACAAGAAACAACTGAGCCAACCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="32946" stop="31915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32646" g_stop="32215" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32646" e_stop="32215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAATACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGTAGAAAACACTGG-GGTGTCTGGCCCTGATCATATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCAGTTTCCCCATCGTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGCGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACTACCTCTACCATGGCCCCTTGCCGCTGTTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="+" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="31983" stop="33134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32282" g_stop="32834" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="+" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32282" e_stop="32834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGACGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATATGATCAGGGCCAGACACC-CCAGTGTTTTCTACACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTATTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTAAGTTATCAGTTTCAAGGTAATGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="33304" stop="31986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33004" g_stop="32286" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33004" e_stop="32286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATTCGCTCTTGTGGACTGAAACACAGTTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCATTACCTTGAAACTGATAACTTACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCCGCACCCTTGAATACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGTAGAAAACACTGG-GGTGTCTGGCCCTGATCATATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCAGTTTCCCCAT-CGTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="33301" stop="32039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33001" g_stop="32339" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33001" e_stop="32339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCGCTCTTGTGGACTGAAACACAGTTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCATTACCTTGAAACTGATAACTTACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCCGCACCCTTGAATACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGTAGAAAACACTGG-GGTGTCTGGCCCTGATCATATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCA-ATCCCTCATTCTGCACTTGTTCAGTTTCCCCATCGTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="33865" stop="32568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33565" g_stop="32868" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33565" e_stop="32868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTAACTTGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTTGGCCGTTTTGGTTACCACCATTTCCTTGACCACCACGTCCTCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTTCGATCTCCCCACATCCATAACACTTTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCAATGTCGGGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCACTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATTCGCTCTTGTGGACTGAAACACAGTTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="34025" stop="32867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33725" g_stop="33167" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33725" e_stop="33167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAGGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTAACTTGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTTGGCCGTTTTGGTTACCACCATTTCCTTGACCACCACGTCCTCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTTCGATCTCCCCACATCCATAACACTTTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="34634" stop="6471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34335" g_stop="33574" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34335" e_stop="33574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAGCTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCTAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACTACTGAAACCGACTCAATCGAAGGCACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACAACCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATATGCACCGGATTGGAAGCGTTGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCTAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCTACAAAGTTCACCAAAAAAGACCTATACACCTTTTCAACTACCACAGATTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAGGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="34634" stop="33375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34335" g_stop="33675" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34335" e_stop="33675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAGCTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCTAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACTACTGAAACCGACTCAATCGAAGGCACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACAACCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATATGCACCGGATTGGAAGCGTTGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCTAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCTACAAAGTTCACCAAAAAAGACCTATACACCTTTTCAACTACCACAGATTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="36703" stop="35926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36403" g_stop="36227" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36403" e_stop="36227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATCTTCCAACACTTGAATCGTCCTTTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="+" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="37982" stop="38816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38282" g_stop="38516" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="+" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38282" e_stop="38516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACTAAATTCCCAAATGAGTGTGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAATTGATTTTATGATATTGCTTAATACATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTT-TCTTCTTGTTATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTATCTTCTTGTTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243101" ref_strand="+" ref_description="SGN-E243101 [cLEE-2-C1]">
      <seq>caaattacatatcctcaacaacaacacttcaacaaattacatatcctcaacaagaatagttcaacaaattatatatccgccataacaagctcaatattaatcaatcacaagttctgcagaaaggcaataagaagatcgagaaaatacgatatcaagttcactaatgataagtgtgtaatgcaatggaatgcaatgtcaagtataatgatgcatgtctgacctagtgatatacacccgctgtctctcagtccgggacccttgggggacatatctgtccatgcatctgtcgcggcgcacgacacgatcctcgataatagtaaccatcacggcgcgcgatacgttcctcgaaatatagtatccatcgcggcgcgcgatacgtccctcgaaatggtacatcctcttaagtacccattatttctcaatgcacataacacttgccacaaccaatgcctcagaataatgcagatgacaagttcacacatataatgaggagatgaccattttcataacatcctacagttcacaaccacacaaacatcaagttacatcaacaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="+" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="54385" stop="55568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54685" g_stop="55027" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="354" r_length="341" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55028" i_stop="55065" i_length="38">
            <donor d_prob="0.900" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55066" g_stop="55268" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="557" r_length="203" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="+" ref_id="SGN-E243101" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54685" e_stop="55027"/>
          <exon e_start="55066" e_stop="55268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACAACAACACTTAGACAAATTACATATCCTCAACAACAACACTTCAACAAATTACATATTCGCAATAACAAGCTCAATATTGATCAATCACAAGTTCCACAGAATGGTAATCATAAGATCAGCAAAACACGATATCAAGTTCACTAATGATAAATATGTGCAATACAATGGAATACAATGTCAAGTATAATGATGCATGTCTGACCTAGTGACATACACTCGCTGTCTCTCAGTCCGGGACCCATAGGGGACATATCTGTTCATGCATCTGTCGCGGAGCACGACATGACCCTCGATAATAGTAACCATCATGGCGCGCGATACGTCTCTCGAAATATAGTATCCATCGCGACGCGCGATATGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTCTTTCTCAATGCACATAACAATTGTCACAACCAATGCCTCATAATAATGCAGATGACACGTTCACACAAATAATGAGGAGATGACCATTTTCATAACATTGCAGAGTTCACAACCACACAAACATGAAATCACATCAACAATGA</genome_strand>
        <mrna_strand>CTCAACAACAACACTTCAACAAATTACATATCCTCAACAAGAATAGTTCAACAAATTATATATCCGCCATAACAAGCTCAATATTAATCAATCACAAGTTCTGCAGAAAGGCAATAAGAAGATCGAGAAAATACGATATCAAGTTCACTAATGAT-AA-GTGTGTAATGCAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATATACACCCGCTGTCTCTCAGTCCGGGACCCTTGGGGGACATATCTGTCCATGCATCTGTCGCGGCGCACGACACGATCCTCGATAATAGTAACCATCACGGCGCGCGATACGTTCCTCGAAATATA......................................GTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTATTTCTCAATGCACATAACACTTGCCACAACCAATGCCTCAGAATAATGCAGATGACAAGTTCACACATATAATGAGGAGATGACCATTTTCATAACATCCTACAGTTCACAACCACACAAACATCAAGTTACATCAACAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278592" ref_strand="+" ref_description="SGN-E278592 [cLER-10-F11]">
      <seq>tatatgtgggggagtcacgggattggtgatggattgacttgtccacattgattaatttaatgatgaaaaaaaaaggataaaaaaaaaggcaatgtgattaaatatttaagtgtgatgtgttcagaaagggatgaaggattgttgaatcattgttgatgtgatttcatgtttgtgtggttttgaattgtgcaatgttatgaaaatggtgatctcctcattatttgtgtgaacttgccatctgcattattatgaggcattggttgtgacaagtgttatgtgcattgagaaagaatgagtacttaagaggatgtacaatttcgagggacgtatcgcgcgccgcgatggatactatatttcgagggacgtatcgcatgccgcgatggatactatattttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="55712" stop="54718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55412" g_stop="55018" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E278592" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55412" e_stop="55018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATGTTTGGGAGTAACGGGATTGGTGATGGATTGACTTGCCCACATTGATTAATTCTAATAATG-AAAAAAAGGGAT--AACAAAAGGCAATGTGATTAATTGTTTATGTGTGATGTGTTGAGAAAGGGTTGAACGCTTGTTGAATCATTGTTGATGTGATTTCATGTTTGTGTGGTTGTGAACTCTGCAATGTTATGAAAATGGTCATCTCCTCATTATTTGTGTGAACGTGTCATCTGCATTATTATGAGGCATTGGTTGTGACAATTGTTATGTGCATTGAGAAAGAATGGGTACTTAAGAGGATGTACCATTTCGAGGGACGTATCGCGCGCCGCGATGGATACTATATTTCGAGGGACATATCGCGCGTCGCGATGGATACTATATTTCGA</genome_strand>
        <mrna_strand>TATATGTGGGGGAGTCACGGGATTGGTGATGGATTGACTTGTCCACATTGATTAATT-TAATGATGAAAAAAAAAGGATAAAAAAAAAGGCAATGTGATTAAATATTTAAGTGTGATGTGTTCAGAAAGGGATGAAGGATTGTTGAATCATTGTTGATGTGATTTCATGTTTGTGTGGTTTTGAATTGTGCAATGTTATGAAAATGGTGATCTCCTCATTATTTGTGTGAACTTGCCATCTGCATTATTATGAGGCATTGGTTGTGACAAGTGTTATGTGCATTGAGAAAGAATGAGTACTTAAGAGGATGTACAATTTCGAGGGACGTATCGCGCGCCGCGATGGATACTATATTTCGAGGGACGTATCGCATGCCGCGATGGATACTATATTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357033" ref_strand="+" ref_description="SGN-E357033 [cTOS-22-C24]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="59424" stop="58488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59124" g_stop="58788" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E357033" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59124" e_stop="58788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTACAAATAGAAAACAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATCTCATTAACAGTTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATGATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTC-GGTTCGTGACACCCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="+" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="58498" stop="59335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58798" g_stop="59035" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="+" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58798" e_stop="59035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATCATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAACTGTTAATGAGATAGTGCTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="+" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="58499" stop="59576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58799" g_stop="59276" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="+" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58799" e_stop="59276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATCATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAACTGTTAATGAGATAGTGCTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGTTTTCTATTTGTAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGTCATCGTCCTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGAAAATTCAGGGTAAGCTAATGCCTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351583" ref_strand="-" ref_description="SGN-E351583 [cTOS-12-L11]">
      <seq>taagcatgctatggaaattatccatttgttggctgccctaaacccaatccaagtgatggttgatgctgttatcaacagtggcccaagagaagatgcaactcgtataggttctgctggtgttgtgaggcgacaagctgttgatatttctccactccgtcgtgtcaaccaagcaatatatctcctcacaactggtgcacgtgagagtgctttcaggaacatcaagcccatagcagaatcccttgcagatgaactcattaatgctgccaagggattttccaccagttatgctatcaagaagaaggatgagattgagagggttgccaaggccaatcgttgagggtgcagtatggatatttactattggttggccagttttgcttcgaaacgttgtttgttctttattttttagttgctagaaaggcattttggaattagtaacgagtttttttgtttgggaaacttggagtccattggtattgaatattatatgggggaattagcaaaaagcaaaattgagcttgctgttattctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="63504" stop="62093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63204" g_stop="63127" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63126" i_stop="62948" i_length="179">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62947" g_stop="62744" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="282" r_length="204" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62743" i_stop="62644" i_length="100">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62643" g_stop="62393" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="533" r_length="251" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="534" polyA_stop="572"/>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E351583" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351583" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63204" e_stop="63127"/>
          <exon e_start="62947" e_stop="62744"/>
          <exon e_start="62643" e_stop="62393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAGGTTTAGAGATTATTCTGATTTTTGCATATTTATTAGCTCGAGTTTTTCTTGCTGAGGTCTTGTTAATTAGAAGATTTTCATACCATGTCTTCTTTGTTCCATTTCCATGTCGCGGCATACTTGAGATATTGTAGTCATTCTCATTTTTTCCTTCCCATATTCTTACCTATGTGATGCAGTGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATTTCTCCACTCCGTCGTGTCAACCAAGCAATATATCTCCTCACAACTGGTGCACGTGAGAGTGCTTTCAGGAACATCAAGACCATAGCAGAATGCCTTGCAGATGAACTCATTAATGCTGCCAAGGGATCTTCCAACAGGTAATCTTTTCTATTGCCATCTTTTTACTCCTATATGCGTTTAATCCTTAATAAATGTAACTATATTCTCTGCCTACTTATTCATTCTATGTACGTGTAGCTATGCTATCAAGAAGAAGGATGAGATTGAGAGGGTTGCCAAGGCCAATCGTTGAGGGTGCAGTATGGATATTTACTATTGGTTGGACAGTTTTGCTTCGAAACGTTGTTTGTTCTTTATTTTTTAGTTGCTAGAAAGGCATTTTGGAACTAGTAACGAGTTTTTCTGTTTGGGAAACTTGGAGTACATTGGTATTGAATATTATATGGGGGAATTAGCAAAAAGCAAAATTGAGCTTGCTGTTATTCTCA</genome_strand>
        <mrna_strand>TAAGCATGCTATGGAAATTATCCATTTGTTGGCTGCCCTAAACCCAATCCAAGTGATGGTTGATGCTGTTATCAACAG...................................................................................................................................................................................TGGCCCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATTTCTCCACTCCGTCGTGTCAACCAAGCAATATATCTCCTCACAACTGGTGCACGTGAGAGTGCTTTCAGGAACATCAAGCCCATAGCAGAATCCCTTGCAGATGAACTCATTAATGCTGCCAAGGGATTTTCCACCAG....................................................................................................TTATGCTATCAAGAAGAAGGATGAGATTGAGAGGGTTGCCAAGGCCAATCGTTGAGGGTGCAGTATGGATATTTACTATTGGTTGGCCAGTTTTGCTTCGAAACGTTGTTTGTTCTTTATTTTTTAGTTGCTAGAAAGGCATTTTGGAATTAGTAACGAGTTTTTTTGTTTGGGAAACTTGGAGTCCATTGGTATTGAATATTATATGGGGGAATTAGCAAAAAGCAAAATTGAGCTTGCTGTTATTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217332" ref_strand="+" ref_description="SGN-E217332 [cLEL-21-L14](-)">
      <seq>ggaacatcaagaccatagcagaatgccttgcagatgaactcattaatgctgccaagggatcttccaacagctatgctatcaagaagaaggatgagattgagagggttgccaaggccaatcgttgagggtgcagtatggatatttactattggttggacagttttgcttcgaaacgttgtttgttctttattttttagttgctagaaaggcattttggaactagtaacgagtttttctgtttgggaaacttggagtacattggtattgaatattatatgggggaattagcaaaaagcaaaattgagcttgctgttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="63113" stop="62099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62813" g_stop="62744" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62743" i_stop="62644" i_length="100">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62643" g_stop="62400" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="314" r_length="244" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="315" polyA_stop="334"/>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E217332" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62813" e_stop="62744"/>
          <exon e_start="62643" e_stop="62400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACATCAAGACCATAGCAGAATGCCTTGCAGATGAACTCATTAATGCTGCCAAGGGATCTTCCAACAGGTAATCTTTTCTATTGCCATCTTTTTACTCCTATATGCGTTTAATCCTTAATAAATGTAACTATATTCTCTGCCTACTTATTCATTCTATGTACGTGTAGCTATGCTATCAAGAAGAAGGATGAGATTGAGAGGGTTGCCAAGGCCAATCGTTGAGGGTGCAGTATGGATATTTACTATTGGTTGGACAGTTTTGCTTCGAAACGTTGTTTGTTCTTTATTTTTTAGTTGCTAGAAAGGCATTTTGGAACTAGTAACGAGTTTTTCTGTTTGGGAAACTTGGAGTACATTGGTATTGAATATTATATGGGGGAATTAGCAAAAAGCAAAATTGAGCTTGCTGTT</genome_strand>
        <mrna_strand>GGAACATCAAGACCATAGCAGAATGCCTTGCAGATGAACTCATTAATGCTGCCAAGGGATCTTCCAACAG....................................................................................................CTATGCTATCAAGAAGAAGGATGAGATTGAGAGGGTTGCCAAGGCCAATCGTTGAGGGTGCAGTATGGATATTTACTATTGGTTGGACAGTTTTGCTTCGAAACGTTGTTTGTTCTTTATTTTTTAGTTGCTAGAAAGGCATTTTGGAACTAGTAACGAGTTTTTCTGTTTGGGAAACTTGGAGTACATTGGTATTGAATATTATATGGGGGAATTAGCAAAAAGCAAAATTGAGCTTGCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559207" ref_strand="+" ref_description="SGN-E559207 [18669]">
      <seq>caccggctgggaggtacaagccaagcggtttagaaaggctcagtgcccaattgtggagaggttgaccaactcactgatgatgcacggaaggaacaacgggaagaagttgatggctgttcgtattattaagcatgctatggaaattatccatctgttgactgacctagacccaatccaagtgattgttgatgctgttatcaacagtggaccaagagaagatgcaactcgtataggttctgctggtgttgtgaggcgacaggctgttgatatttctccactccgtcgtgttaaccaggcaatatatctcctcacaactggtgcacgtgagagttctttcaggaacatcaagaccatagcagaatgccttgcagatgaactcattaatgctgccaagggatcttccaacagctatgctatcaagaagaaggatgagattgagagggttgccaaggccaatcgttaagggttcttttcctgcagtgtggataattcttattggttggacagttttgctttgaaacattgtttgttctttatttttagttctagaaaggcattttggaactagtaatgagttttgtgtttcggaaacttggagtacattggtattgaatattatggggaattagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="63632" stop="62135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63332" g_stop="63127" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63126" i_stop="62948" i_length="179">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62947" g_stop="62744" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="408" r_length="204" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62743" i_stop="62644" i_length="100">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62643" g_stop="62415" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="640" r_length="232" r_score="0.838"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E559207" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63332" e_stop="63127"/>
          <exon e_start="62947" e_stop="62744"/>
          <exon e_start="62643" e_stop="62415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAGGTTTAGAGATTATTCTGATTTTTGCATATTTATTAGCTCGAGTTTTTCTTGCTGAGGTCTTGTTAATTAGAAGATTTTCATACCATGTCTTCTTTGTTCCATTTCCATGTCGCGGCATACTTGAGATATTGTAGTCATTCTCATTTTTTCCTTCCCATATTCTTACCTATGTGATGCAGTGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATTTCTCCACTCCGTCGTGTCAACCAAGCAATATATCTCCTCACAACTGGTGCACGTGAGAGTGCTTTCAGGAACATCAAGACCATAGCAGAATGCCTTGCAGATGAACTCATTAATGCTGCCAAGGGATCTTCCAACAGGTAATCTTTTCTATTGCCATCTTTTTACTCCTATATGCGTTTAATCCTTAATAAATGTAACTATATTCTCTGCCTACTTATTCATTCTATGTACGTGTAGCTATGCTATCAAGAAGAAGGATGAGATTGAGAGGGTTGCCAAGGCCAATCGTTGAGGG---------TGCAGTATGGATATTTACTATTGGTTGGACAGTTTTGCTTCGAAACGTTGTTTGTTCTTTATTTTTTAGTTGCTAGAAAGGCATTTTGGAACTAGTAACGAGTTTTTCTGTTTGGGAAACTTGGAGTACATTGGTATTGAATATTATATGGGGGAATTAGCAAAAAGCAAA</genome_strand>
        <mrna_strand>CAC-CGGCTGGGAGGTA-CAAGCCAAGCGGTTTAGAAAGGCTCAGTGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCTGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAGACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAG...................................................................................................................................................................................TGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAGGCTGTTGATATTTCTCCACTCCGTCGTGTTAACCAGGCAATATATCTCCTCACAACTGGTGCACGTGAGAGTTCTTTCAGGAACATCAAGACCATAGCAGAATGCCTTGCAGATGAACTCATTAATGCTGCCAAGGGATCTTCCAACAG....................................................................................................CTATGCTATCAAGAAGAAGGATGAGATTGAGAGGGTTGCCAAGGCCAATCGTTAAGGGTTCTTTTCCTGCAGTGTGGATAATTCTTATTGGTTGGACAGTTTTGCTTTGAAACATTGTTTGTTCTTTA-TTTTTAGTT-CTAGAAAGGCATTTTGGAACTAGTAATGAG-TTTTGTGTTTCGGAAACTTGGAGTACATTGGTATTGAATA-T-TAT-GGGGAATTAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698590" ref_strand="+" ref_description="SGN-E698590 [FA06DG01]">
      <seq>cggatacctccttagacctatcagaaaaacaggaaaaatggaagaagcttcagtagtagcagtggacaaccaaaagccgcatcaagagaagcctcacactgatgttttgcttttcaatcgttggtcatatgatgatgttcagattgctgatatttctgttgaggattacataactgctactgctaacaagcatcctacatatacaccacacacagctgggaggtaccaagccaagcggtttagaaaggctcaatgcccaattgtggagaggttgaccaactcactgatgatgcacggaaggaacaacgggaagaagttgatggccgttcgtattattaagcatgctatggaaattatccatctgttgactgacctaaacccaatccaagtgattgttgatgctgttatcaacagtggaccaagagaagatgcaactcgtataggttctgctggtgttgtgaggcgacaagctgttgatatttctccactccgtcgtgtcaaccaagcaatatatctcctcacaactggtgcacgtgagagtgctttcaggaacatcaagaccatagcagaatgccttgcagatgaactcattaatgctgccaagggatcttccaacagctatgctatcaagaagaaggatgagattgagagggttgccaaggcccatcgttgagggtgcagtatggatatttactattggttggacagttttgcttcgaaacgttgtttgttctttattttttacttgctagaaaggcattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="64979" stop="62198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64681" g_stop="64540" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64539" i_stop="63399" i_length="1141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63398" g_stop="63127" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="414" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63126" i_stop="62948" i_length="179">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62947" g_stop="62744" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="618" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62743" i_stop="62644" i_length="100">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62643" g_stop="62498" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="764" r_length="146" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E698590" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64681" e_stop="64540"/>
          <exon e_start="63398" e_stop="63127"/>
          <exon e_start="62947" e_stop="62744"/>
          <exon e_start="62643" e_stop="62498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACACCTCCTTAGACCTATCAGAAAAACAGGAAAAATGGAAGAAGCTTCAGTAGTAGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAGGTTTGTTTGTTTCCCTTTCAATTTTATTCCTCTCCAGTTCCTATATCTTTTCATTATTTGCCTAACATTAATGTCGAATTGGATGAAACTTGGCATTTTCGAAATCATAAGATGAACATTTGAATTATTTTGTTTCTTGCGTTAGCTAAACTCTAATTGTAGTGTAGCAGAGGTGATATATCAGTAAGGGTGGGCATGGTAGGGTAGATACCGAAACCAAAATTTTTCACTCAATGGTTTCAATATCATGACATTTGATATTATTTATAATGTATATCGAATCACCAAATACTTTAACAGAGTGTATAGTTAGGTATCCAATTCATTTATCGTATTATAATACTAACAAATATATTAACTAGTATTAGTTCAAAGTTGTTTAGACATTGAAAGCTTTGACTACTCTTTTCTTGTTAGAATTGTCCTTTTTGTGTAATTGATTAAGTGATGGAATTGCTTCTTCTTTCTTTTGAATATTTTTACATGAGTAAGATCTTTATATGATATAATTAAGAAGTTTCTAAAGAAACCAAAACATAATTCTCTATTTATATGAGTATATGTAAGTCGAAGTCGAACAAACAATGGTTACCAACCAAAAGTTAAAAAGTATCGGCACATAATGGTTTAATTTGATATGGTAATGGTATAGTACTTTTAAAAATCAAAATTATTGAACCAAAGTTTTCAATATTGTATCATACCTTTCCATGCTCATCCCTACATATCAGTTCTCAAGTCCAATGCATTGAATACTTAACCATGGTTAGGAAACTTGAAACACTATGCACGACACTGCTTAGGTATGTCTATCAACTATAAAGCCTGCTGGCTTGATCTTCTTATTCAAAGAAACATGCATGCTAAACATGATATGATTAAGTTGAACAGAATAGTGTTGGTTTCCCCAATCCATAACAAGCCAACTGGGACAACCTTACAGAAGGTGTGCCTATTCATCATTGTTGCCTTGTAAATGATGGATTTATACAACTGAAAATTACTTGCTGAGAGTTCAGGGAAATCCTTGTTGGTTAAGTTGGAAATGTAATTGTAGGTGGATTCTTCATTGGAATGCTCAAAGGAGAAATTCAGTATATGATCTCTTGAATTCTCTCTTAAATGTTATTATCTCATGCAGATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAGGTTTAGAGATTATTCTGATTTTTGCATATTTATTAGCTCGAGTTTTTCTTGCTGAGGTCTTGTTAATTAGAAGATTTTCATACCATGTCTTCTTTGTTCCATTTCCATGTCGCGGCATACTTGAGATATTGTAGTCATTCTCATTTTTTCCTTCCCATATTCTTACCTATGTGATGCAGTGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATTTCTCCACTCCGTCGTGTCAACCAAGCAATATATCTCCTCACAACTGGTGCACGTGAGAGTGCTTTCAGGAACATCAAGACCATAGCAGAATGCCTTGCAGATGAACTCATTAATGCTGCCAAGGGATCTTCCAACAGGTAATCTTTTCTATTGCCATCTTTTTACTCCTATATGCGTTTAATCCTTAATAAATGTAACTATATTCTCTGCCTACTTATTCATTCTATGTACGTGTAGCTATGCTATCAAGAAGAAGGATGAGATTGAGAGGGTTGCCAAGGCCAATCGTTGAGGGTGCAGTATGGATATTTACTATTGGTTGGACAGTTTTGCTTCGAAACGTTGTTTGTTCTTTATTTTTTAGTTGCTAGAAAGGCATTTTG</genome_strand>
        <mrna_strand>CGGATACCTCCTTAGACCTATCAGAAAAACAGGAAAAATGGAAGAAGCTTCAGTAGTAGCAGTGGACAACCAAAAGCCGCATCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAG...................................................................................................................................................................................TGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATTTCTCCACTCCGTCGTGTCAACCAAGCAATATATCTCCTCACAACTGGTGCACGTGAGAGTGCTTTCAGGAACATCAAGACCATAGCAGAATGCCTTGCAGATGAACTCATTAATGCTGCCAAGGGATCTTCCAACAG....................................................................................................CTATGCTATCAAGAAGAAGGATGAGATTGAGAGGGTTGCCAAGGCCCATCGTTGAGGGTGCAGTATGGATATTTACTATTGGTTGGACAGTTTTGCTTCGAAACGTTGTTTGTTCTTTATTTTTTACTTGCTAGAAAGGCATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262562" ref_strand="+" ref_description="SGN-E262562 [cLEG-63-G22]">
      <seq>aaaaatggaagaagcttcagtagtagcagtggacaaccaaaagccgcagcaagagaagcctcacactgatgttttgcttttcaatcgttggtcatatgatgatgttcagattgctgatatttctgttgaggattacataactgctactgctaacaagcatcctacatatacaccacacacagctgggaggtaccaagccaagcggtttagaaaggctcaatgcccaattgtggagaggttgaccaactcactgatgatgcacggaaggaacaacgggaagaagttgatggccgttcgtattattaagcatgctatggaaattatccatctgttgactgacctaaacccaatccaagtgattgttgatgctgttatcaacagtggaccaagagaagatgcaactcgtataggttctgctggtgttgtgaggcgacaagctgttgatatttctccactccgtcgtgtcaaccaagcaatatatctcctcacaactggtgcacgtgagagtgctttcaggaacatcaagaccatagcagaatgccttgcagatgaactcattaatgctgccaagggatcttccaacagctatgctatcaagaagaaggatgagattgagagggttgccaangccaatcgttgagggtgcagtatggatatttactattggttggacagttttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="64948" stop="62246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64648" g_stop="64540" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64539" i_stop="63399" i_length="1141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63398" g_stop="63127" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="381" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63126" i_stop="62948" i_length="179">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62947" g_stop="62744" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="585" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62743" i_stop="62644" i_length="100">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62643" g_stop="62546" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="683" r_length="98" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E262562" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64648" e_stop="64540"/>
          <exon e_start="63398" e_stop="63127"/>
          <exon e_start="62947" e_stop="62744"/>
          <exon e_start="62643" e_stop="62546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGAAGAAGCTTCAGTAGTAGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAGGTTTGTTTGTTTCCCTTTCAATTTTATTCCTCTCCAGTTCCTATATCTTTTCATTATTTGCCTAACATTAATGTCGAATTGGATGAAACTTGGCATTTTCGAAATCATAAGATGAACATTTGAATTATTTTGTTTCTTGCGTTAGCTAAACTCTAATTGTAGTGTAGCAGAGGTGATATATCAGTAAGGGTGGGCATGGTAGGGTAGATACCGAAACCAAAATTTTTCACTCAATGGTTTCAATATCATGACATTTGATATTATTTATAATGTATATCGAATCACCAAATACTTTAACAGAGTGTATAGTTAGGTATCCAATTCATTTATCGTATTATAATACTAACAAATATATTAACTAGTATTAGTTCAAAGTTGTTTAGACATTGAAAGCTTTGACTACTCTTTTCTTGTTAGAATTGTCCTTTTTGTGTAATTGATTAAGTGATGGAATTGCTTCTTCTTTCTTTTGAATATTTTTACATGAGTAAGATCTTTATATGATATAATTAAGAAGTTTCTAAAGAAACCAAAACATAATTCTCTATTTATATGAGTATATGTAAGTCGAAGTCGAACAAACAATGGTTACCAACCAAAAGTTAAAAAGTATCGGCACATAATGGTTTAATTTGATATGGTAATGGTATAGTACTTTTAAAAATCAAAATTATTGAACCAAAGTTTTCAATATTGTATCATACCTTTCCATGCTCATCCCTACATATCAGTTCTCAAGTCCAATGCATTGAATACTTAACCATGGTTAGGAAACTTGAAACACTATGCACGACACTGCTTAGGTATGTCTATCAACTATAAAGCCTGCTGGCTTGATCTTCTTATTCAAAGAAACATGCATGCTAAACATGATATGATTAAGTTGAACAGAATAGTGTTGGTTTCCCCAATCCATAACAAGCCAACTGGGACAACCTTACAGAAGGTGTGCCTATTCATCATTGTTGCCTTGTAAATGATGGATTTATACAACTGAAAATTACTTGCTGAGAGTTCAGGGAAATCCTTGTTGGTTAAGTTGGAAATGTAATTGTAGGTGGATTCTTCATTGGAATGCTCAAAGGAGAAATTCAGTATATGATCTCTTGAATTCTCTCTTAAATGTTATTATCTCATGCAGATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAGGTTTAGAGATTATTCTGATTTTTGCATATTTATTAGCTCGAGTTTTTCTTGCTGAGGTCTTGTTAATTAGAAGATTTTCATACCATGTCTTCTTTGTTCCATTTCCATGTCGCGGCATACTTGAGATATTGTAGTCATTCTCATTTTTTCCTTCCCATATTCTTACCTATGTGATGCAGTGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATTTCTCCACTCCGTCGTGTCAACCAAGCAATATATCTCCTCACAACTGGTGCACGTGAGAGTGCTTTCAGGAACATCAAGACCATAGCAGAATGCCTTGCAGATGAACTCATTAATGCTGCCAAGGGATCTTCCAACAGGTAATCTTTTCTATTGCCATCTTTTTACTCCTATATGCGTTTAATCCTTAATAAATGTAACTATATTCTCTGCCTACTTATTCATTCTATGTACGTGTAGCTATGCTATCAAGAAGAAGGATGAGATTGAGAGGGTTGCCAAGGCCAATCGTTGAGGGTGCAGTATGGATATTTACTATTGGTTGGACAGTTTTGCTT</genome_strand>
        <mrna_strand>AAAAATGGAAGAAGCTTCAGTAGTAGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAG...................................................................................................................................................................................TGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATTTCTCCACTCCGTCGTGTCAACCAAGCAATATATCTCCTCACAACTGGTGCACGTGAGAGTGCTTTCAGGAACATCAAGACCATAGCAGAATGCCTTGCAGATGAACTCATTAATGCTGCCAAGGGATCTTCCAACAG....................................................................................................CTATGCTATCAAGAAGAAGGATGAGATTGAGAGGGTTGCCAANGCCAATCGTTGAGGGTGCAGTATGGATATTTACTATTGGTTGGACAGTTTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287025" ref_strand="+" ref_description="SGN-E287025 [cLES-6-J15]">
      <seq>aaaaacaggaaaaatggaagaagcttcagtagtagcagtggacaaccaaaagccgcagcaagagaagcctcacactgatgttttgcttttcaatcgttggtcatatgatgatgttcagattgctgatatttctgttgaggattacataactgctactgctaacaagcatcctacatatacaccacacacagctgggaggtaccaagccaagcggtttagaaaggctcaatgcccaattgtggagaggttgaccaactcactgatgatgcacggaaggaacaacgggaagaagttgatggccgttcgtattattaagcatgctatggaaattatccatctgttgactgacctaaacccaatccaagtgattgttgatgctgttatcaacagtggaccgagagaagatgcaactcgtataggttctgctggtgttgtgaggcgacaagctgttgatatttctccactccgtcgtgtcaaccaagcaatatatctcctcacaactggtgcacgtgagagtgctttcaggaacatcaagaccatagcagaatgccttgcagatgaactcattaatgctgccaagggatcttccaacagctatgctatcaagaagaaggatgagattgagagggttgccaaggccaatcgttgagggtgcagtatggatatttactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="64957" stop="62265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64657" g_stop="64540" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64539" i_stop="63399" i_length="1141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63398" g_stop="63127" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="390" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63126" i_stop="62948" i_length="179">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62947" g_stop="62744" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="594" r_length="204" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62743" i_stop="62644" i_length="100">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62643" g_stop="62565" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="673" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E287025" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64657" e_stop="64540"/>
          <exon e_start="63398" e_stop="63127"/>
          <exon e_start="62947" e_stop="62744"/>
          <exon e_start="62643" e_stop="62565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAGGAAAAATGGAAGAAGCTTCAGTAGTAGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAGGTTTGTTTGTTTCCCTTTCAATTTTATTCCTCTCCAGTTCCTATATCTTTTCATTATTTGCCTAACATTAATGTCGAATTGGATGAAACTTGGCATTTTCGAAATCATAAGATGAACATTTGAATTATTTTGTTTCTTGCGTTAGCTAAACTCTAATTGTAGTGTAGCAGAGGTGATATATCAGTAAGGGTGGGCATGGTAGGGTAGATACCGAAACCAAAATTTTTCACTCAATGGTTTCAATATCATGACATTTGATATTATTTATAATGTATATCGAATCACCAAATACTTTAACAGAGTGTATAGTTAGGTATCCAATTCATTTATCGTATTATAATACTAACAAATATATTAACTAGTATTAGTTCAAAGTTGTTTAGACATTGAAAGCTTTGACTACTCTTTTCTTGTTAGAATTGTCCTTTTTGTGTAATTGATTAAGTGATGGAATTGCTTCTTCTTTCTTTTGAATATTTTTACATGAGTAAGATCTTTATATGATATAATTAAGAAGTTTCTAAAGAAACCAAAACATAATTCTCTATTTATATGAGTATATGTAAGTCGAAGTCGAACAAACAATGGTTACCAACCAAAAGTTAAAAAGTATCGGCACATAATGGTTTAATTTGATATGGTAATGGTATAGTACTTTTAAAAATCAAAATTATTGAACCAAAGTTTTCAATATTGTATCATACCTTTCCATGCTCATCCCTACATATCAGTTCTCAAGTCCAATGCATTGAATACTTAACCATGGTTAGGAAACTTGAAACACTATGCACGACACTGCTTAGGTATGTCTATCAACTATAAAGCCTGCTGGCTTGATCTTCTTATTCAAAGAAACATGCATGCTAAACATGATATGATTAAGTTGAACAGAATAGTGTTGGTTTCCCCAATCCATAACAAGCCAACTGGGACAACCTTACAGAAGGTGTGCCTATTCATCATTGTTGCCTTGTAAATGATGGATTTATACAACTGAAAATTACTTGCTGAGAGTTCAGGGAAATCCTTGTTGGTTAAGTTGGAAATGTAATTGTAGGTGGATTCTTCATTGGAATGCTCAAAGGAGAAATTCAGTATATGATCTCTTGAATTCTCTCTTAAATGTTATTATCTCATGCAGATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAGGTTTAGAGATTATTCTGATTTTTGCATATTTATTAGCTCGAGTTTTTCTTGCTGAGGTCTTGTTAATTAGAAGATTTTCATACCATGTCTTCTTTGTTCCATTTCCATGTCGCGGCATACTTGAGATATTGTAGTCATTCTCATTTTTTCCTTCCCATATTCTTACCTATGTGATGCAGTGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATTTCTCCACTCCGTCGTGTCAACCAAGCAATATATCTCCTCACAACTGGTGCACGTGAGAGTGCTTTCAGGAACATCAAGACCATAGCAGAATGCCTTGCAGATGAACTCATTAATGCTGCCAAGGGATCTTCCAACAGGTAATCTTTTCTATTGCCATCTTTTTACTCCTATATGCGTTTAATCCTTAATAAATGTAACTATATTCTCTGCCTACTTATTCATTCTATGTACGTGTAGCTATGCTATCAAGAAGAAGGATGAGATTGAGAGGGTTGCCAAGGCCAATCGTTGAGGGTGCAGTATGGATATTTACTAT</genome_strand>
        <mrna_strand>AAAAACAGGAAAAATGGAAGAAGCTTCAGTAGTAGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAG...................................................................................................................................................................................TGGACCGAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATTTCTCCACTCCGTCGTGTCAACCAAGCAATATATCTCCTCACAACTGGTGCACGTGAGAGTGCTTTCAGGAACATCAAGACCATAGCAGAATGCCTTGCAGATGAACTCATTAATGCTGCCAAGGGATCTTCCAACAG....................................................................................................CTATGCTATCAAGAAGAAGGATGAGATTGAGAGGGTTGCCAAGGCCAATCGTTGAGGGTGCAGTATGGATATTTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347850" ref_strand="+" ref_description="SGN-E347850 [cTOF-26-P6]">
      <seq>ttcagtagtagcagtggacaaccaaaagccgcagcaagagaagcctcacactgatgttttgcttttcaatcgttggtcatatgatgatgttcagattgctgatatttctgttgaggattacataactgctactgctaacaagcatcctacatatacaccacacacagctgggaggtaccaagccaagcggtttagaaaggctcaatgcccaattgtggagaggttgaccaactcactgatgatgcacggaaggaacaacgggaagaagttgatggccgttcgtattattaagcatgctatggaaattatccatctgttgactgacctaaacccaatccaagtgattgttgatgctgttatcaacagtggaccaagagaagatgcaactcgtataggttctgctggtgttgtgaggcgacaagctgttgatatttctccactccgtcgtgtcaaccaagcaatatatctcctcacaactggtgcacgtgagagtgctttcaggaacatcaagaccatagcagaatgccttgcagatgaactcattaatgctgccaagggatcttncaacagctatgctatcaagaagaaggatgagattgagagggttgccaaggccaatcgttgagggtgcagtatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="64933" stop="62275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64633" g_stop="64540" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64539" i_stop="63399" i_length="1141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63398" g_stop="63127" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="366" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63126" i_stop="62948" i_length="179">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62947" g_stop="62744" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="570" r_length="204" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62743" i_stop="62644" i_length="100">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62643" g_stop="62575" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="639" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E347850" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64633" e_stop="64540"/>
          <exon e_start="63398" e_stop="63127"/>
          <exon e_start="62947" e_stop="62744"/>
          <exon e_start="62643" e_stop="62575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTAGTAGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAGGTTTGTTTGTTTCCCTTTCAATTTTATTCCTCTCCAGTTCCTATATCTTTTCATTATTTGCCTAACATTAATGTCGAATTGGATGAAACTTGGCATTTTCGAAATCATAAGATGAACATTTGAATTATTTTGTTTCTTGCGTTAGCTAAACTCTAATTGTAGTGTAGCAGAGGTGATATATCAGTAAGGGTGGGCATGGTAGGGTAGATACCGAAACCAAAATTTTTCACTCAATGGTTTCAATATCATGACATTTGATATTATTTATAATGTATATCGAATCACCAAATACTTTAACAGAGTGTATAGTTAGGTATCCAATTCATTTATCGTATTATAATACTAACAAATATATTAACTAGTATTAGTTCAAAGTTGTTTAGACATTGAAAGCTTTGACTACTCTTTTCTTGTTAGAATTGTCCTTTTTGTGTAATTGATTAAGTGATGGAATTGCTTCTTCTTTCTTTTGAATATTTTTACATGAGTAAGATCTTTATATGATATAATTAAGAAGTTTCTAAAGAAACCAAAACATAATTCTCTATTTATATGAGTATATGTAAGTCGAAGTCGAACAAACAATGGTTACCAACCAAAAGTTAAAAAGTATCGGCACATAATGGTTTAATTTGATATGGTAATGGTATAGTACTTTTAAAAATCAAAATTATTGAACCAAAGTTTTCAATATTGTATCATACCTTTCCATGCTCATCCCTACATATCAGTTCTCAAGTCCAATGCATTGAATACTTAACCATGGTTAGGAAACTTGAAACACTATGCACGACACTGCTTAGGTATGTCTATCAACTATAAAGCCTGCTGGCTTGATCTTCTTATTCAAAGAAACATGCATGCTAAACATGATATGATTAAGTTGAACAGAATAGTGTTGGTTTCCCCAATCCATAACAAGCCAACTGGGACAACCTTACAGAAGGTGTGCCTATTCATCATTGTTGCCTTGTAAATGATGGATTTATACAACTGAAAATTACTTGCTGAGAGTTCAGGGAAATCCTTGTTGGTTAAGTTGGAAATGTAATTGTAGGTGGATTCTTCATTGGAATGCTCAAAGGAGAAATTCAGTATATGATCTCTTGAATTCTCTCTTAAATGTTATTATCTCATGCAGATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAGGTTTAGAGATTATTCTGATTTTTGCATATTTATTAGCTCGAGTTTTTCTTGCTGAGGTCTTGTTAATTAGAAGATTTTCATACCATGTCTTCTTTGTTCCATTTCCATGTCGCGGCATACTTGAGATATTGTAGTCATTCTCATTTTTTCCTTCCCATATTCTTACCTATGTGATGCAGTGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATTTCTCCACTCCGTCGTGTCAACCAAGCAATATATCTCCTCACAACTGGTGCACGTGAGAGTGCTTTCAGGAACATCAAGACCATAGCAGAATGCCTTGCAGATGAACTCATTAATGCTGCCAAGGGATCTTCCAACAGGTAATCTTTTCTATTGCCATCTTTTTACTCCTATATGCGTTTAATCCTTAATAAATGTAACTATATTCTCTGCCTACTTATTCATTCTATGTACGTGTAGCTATGCTATCAAGAAGAAGGATGAGATTGAGAGGGTTGCCAAGGCCAATCGTTGAGGGTGCAGTATGGA</genome_strand>
        <mrna_strand>TTCAGTAGTAGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAG...................................................................................................................................................................................TGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATTTCTCCACTCCGTCGTGTCAACCAAGCAATATATCTCCTCACAACTGGTGCACGTGAGAGTGCTTTCAGGAACATCAAGACCATAGCAGAATGCCTTGCAGATGAACTCATTAATGCTGCCAAGGGATCTTNCAACAG....................................................................................................CTATGCTATCAAGAAGAAGGATGAGATTGAGAGGGTTGCCAAGGCCAATCGTTGAGGGTGCAGTATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320513" ref_strand="+" ref_description="SGN-E320513 [cTOB-22-I5]">
      <seq>ttagacctatcagaaaaacaggaaaaatggaagaagcttcagtagtagcagtggacaaccaaaagccgcagcaagagaagcctcacactgatgttttgcttttcaatcgttggtcatatgatgatgttcagattgctgatatttctgttgaggattacataactgctactgctaacaagcatcctacatatacaccacacacagctgggaggtaccaagccaagcggtttagaaaggctcaatgcccaattgtggagaggttgaccaactcactgatgatgcacggaaggaacaacgggaagaagttgatggccgttcgtattattaagcatgctatggaaattatccatctgttgactgacctaaacccaatccaagtgattgttgatgctgttatcaacagtggaccaagagaagatgcaactcgtataggttctgctggtgttgtgaggcgacaagctgttgatatttctccactccgtcgtgtcaaccaagcaatatatctcctcacaactggtgcacgtgagagtgctttcaggaacatcaagaccatagcagaatgccttgcagatgaactcattaatgctgccaagggatcttcccacagctatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="64970" stop="62437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64670" g_stop="64540" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64539" i_stop="63399" i_length="1141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63398" g_stop="63127" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="403" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63126" i_stop="62948" i_length="179">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62947" g_stop="62744" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="607" r_length="204" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62743" i_stop="62644" i_length="100">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62643" g_stop="62637" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="614" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E320513" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64670" e_stop="64540"/>
          <exon e_start="63398" e_stop="63127"/>
          <exon e_start="62947" e_stop="62744"/>
          <exon e_start="62643" e_stop="62637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGACCTATCAGAAAAACAGGAAAAATGGAAGAAGCTTCAGTAGTAGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAGGTTTGTTTGTTTCCCTTTCAATTTTATTCCTCTCCAGTTCCTATATCTTTTCATTATTTGCCTAACATTAATGTCGAATTGGATGAAACTTGGCATTTTCGAAATCATAAGATGAACATTTGAATTATTTTGTTTCTTGCGTTAGCTAAACTCTAATTGTAGTGTAGCAGAGGTGATATATCAGTAAGGGTGGGCATGGTAGGGTAGATACCGAAACCAAAATTTTTCACTCAATGGTTTCAATATCATGACATTTGATATTATTTATAATGTATATCGAATCACCAAATACTTTAACAGAGTGTATAGTTAGGTATCCAATTCATTTATCGTATTATAATACTAACAAATATATTAACTAGTATTAGTTCAAAGTTGTTTAGACATTGAAAGCTTTGACTACTCTTTTCTTGTTAGAATTGTCCTTTTTGTGTAATTGATTAAGTGATGGAATTGCTTCTTCTTTCTTTTGAATATTTTTACATGAGTAAGATCTTTATATGATATAATTAAGAAGTTTCTAAAGAAACCAAAACATAATTCTCTATTTATATGAGTATATGTAAGTCGAAGTCGAACAAACAATGGTTACCAACCAAAAGTTAAAAAGTATCGGCACATAATGGTTTAATTTGATATGGTAATGGTATAGTACTTTTAAAAATCAAAATTATTGAACCAAAGTTTTCAATATTGTATCATACCTTTCCATGCTCATCCCTACATATCAGTTCTCAAGTCCAATGCATTGAATACTTAACCATGGTTAGGAAACTTGAAACACTATGCACGACACTGCTTAGGTATGTCTATCAACTATAAAGCCTGCTGGCTTGATCTTCTTATTCAAAGAAACATGCATGCTAAACATGATATGATTAAGTTGAACAGAATAGTGTTGGTTTCCCCAATCCATAACAAGCCAACTGGGACAACCTTACAGAAGGTGTGCCTATTCATCATTGTTGCCTTGTAAATGATGGATTTATACAACTGAAAATTACTTGCTGAGAGTTCAGGGAAATCCTTGTTGGTTAAGTTGGAAATGTAATTGTAGGTGGATTCTTCATTGGAATGCTCAAAGGAGAAATTCAGTATATGATCTCTTGAATTCTCTCTTAAATGTTATTATCTCATGCAGATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAGGTTTAGAGATTATTCTGATTTTTGCATATTTATTAGCTCGAGTTTTTCTTGCTGAGGTCTTGTTAATTAGAAGATTTTCATACCATGTCTTCTTTGTTCCATTTCCATGTCGCGGCATACTTGAGATATTGTAGTCATTCTCATTTTTTCCTTCCCATATTCTTACCTATGTGATGCAGTGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATTTCTCCACTCCGTCGTGTCAACCAAGCAATATATCTCCTCACAACTGGTGCACGTGAGAGTGCTTTCAGGAACATCAAGACCATAGCAGAATGCCTTGCAGATGAACTCATTAATGCTGCCAAGGGATCTTCCAACAGGTAATCTTTTCTATTGCCATCTTTTTACTCCTATATGCGTTTAATCCTTAATAAATGTAACTATATTCTCTGCCTACTTATTCATTCTATGTACGTGTAGCTATGCT</genome_strand>
        <mrna_strand>TTAGACCTATCAGAAAAACAGGAAAAATGGAAGAAGCTTCAGTAGTAGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAG...................................................................................................................................................................................TGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATTTCTCCACTCCGTCGTGTCAACCAAGCAATATATCTCCTCACAACTGGTGCACGTGAGAGTGCTTTCAGGAACATCAAGACCATAGCAGAATGCCTTGCAGATGAACTCATTAATGCTGCCAAGGGATCTTCCCACAG....................................................................................................CTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272678" ref_strand="+" ref_description="SGN-E272678 [cLEM-21-K1]">
      <seq>gcttagacctatcagaaaaacaggaaaaatggaagaagcttcagtagtagcagtggacaaccaaaagccgcagcaagagaagcctcacactgatgttttgcttttcaatcgttggtcatatgatgatgttcagattgctgatatttctgttgaggattacataactgctactgctaacaagcatcctacatatacaccacacacagctgggaggtaccaagccaagcggtttagaaaggctcaatgcccaattgtggagaggttgaccaactcactgatgatgcacggaaggaacaacgggaagaagttgatggccgttcgtattattaagcatgctatggaaattatccatctgttgactgacctaaacccaatccaagtgattgttgatgctgttatcaacagtggaccaagagaagatgcaactcgtataggttctgctggtgttgtgaggcgacaagctgttgatatttctccactccgtcgtgtcaaccaagcaatatatctcctcacaactggtgcacgtgagagtgctttcaggaacatcaagaccatagcagaatgccttgcagatgaactcattaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="64971" stop="62465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64672" g_stop="64540" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64539" i_stop="63399" i_length="1141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63398" g_stop="63127" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="405" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63126" i_stop="62948" i_length="179">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62947" g_stop="62765" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="588" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E272678" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64672" e_stop="64540"/>
          <exon e_start="63398" e_stop="63127"/>
          <exon e_start="62947" e_stop="62765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTAGACCTATCAGAAAAACAGGAAAAATGGAAGAAGCTTCAGTAGTAGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAGGTTTGTTTGTTTCCCTTTCAATTTTATTCCTCTCCAGTTCCTATATCTTTTCATTATTTGCCTAACATTAATGTCGAATTGGATGAAACTTGGCATTTTCGAAATCATAAGATGAACATTTGAATTATTTTGTTTCTTGCGTTAGCTAAACTCTAATTGTAGTGTAGCAGAGGTGATATATCAGTAAGGGTGGGCATGGTAGGGTAGATACCGAAACCAAAATTTTTCACTCAATGGTTTCAATATCATGACATTTGATATTATTTATAATGTATATCGAATCACCAAATACTTTAACAGAGTGTATAGTTAGGTATCCAATTCATTTATCGTATTATAATACTAACAAATATATTAACTAGTATTAGTTCAAAGTTGTTTAGACATTGAAAGCTTTGACTACTCTTTTCTTGTTAGAATTGTCCTTTTTGTGTAATTGATTAAGTGATGGAATTGCTTCTTCTTTCTTTTGAATATTTTTACATGAGTAAGATCTTTATATGATATAATTAAGAAGTTTCTAAAGAAACCAAAACATAATTCTCTATTTATATGAGTATATGTAAGTCGAAGTCGAACAAACAATGGTTACCAACCAAAAGTTAAAAAGTATCGGCACATAATGGTTTAATTTGATATGGTAATGGTATAGTACTTTTAAAAATCAAAATTATTGAACCAAAGTTTTCAATATTGTATCATACCTTTCCATGCTCATCCCTACATATCAGTTCTCAAGTCCAATGCATTGAATACTTAACCATGGTTAGGAAACTTGAAACACTATGCACGACACTGCTTAGGTATGTCTATCAACTATAAAGCCTGCTGGCTTGATCTTCTTATTCAAAGAAACATGCATGCTAAACATGATATGATTAAGTTGAACAGAATAGTGTTGGTTTCCCCAATCCATAACAAGCCAACTGGGACAACCTTACAGAAGGTGTGCCTATTCATCATTGTTGCCTTGTAAATGATGGATTTATACAACTGAAAATTACTTGCTGAGAGTTCAGGGAAATCCTTGTTGGTTAAGTTGGAAATGTAATTGTAGGTGGATTCTTCATTGGAATGCTCAAAGGAGAAATTCAGTATATGATCTCTTGAATTCTCTCTTAAATGTTATTATCTCATGCAGATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAGGTTTAGAGATTATTCTGATTTTTGCATATTTATTAGCTCGAGTTTTTCTTGCTGAGGTCTTGTTAATTAGAAGATTTTCATACCATGTCTTCTTTGTTCCATTTCCATGTCGCGGCATACTTGAGATATTGTAGTCATTCTCATTTTTTCCTTCCCATATTCTTACCTATGTGATGCAGTGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATTTCTCCACTCCGTCGTGTCAACCAAGCAATATATCTCCTCACAACTGGTGCACGTGAGAGTGCTTTCAGGAACATCAAGACCATAGCAGAATGCCTTGCAGATGAACTCATTAATGC</genome_strand>
        <mrna_strand>GCTTAGACCTATCAGAAAAACAGGAAAAATGGAAGAAGCTTCAGTAGTAGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAG...................................................................................................................................................................................TGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATTTCTCCACTCCGTCGTGTCAACCAAGCAATATATCTCCTCACAACTGGTGCACGTGAGAGTGCTTTCAGGAACATCAAGACCATAGCAGAATGCCTTGCAGATGAACTCATTAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298350" ref_strand="+" ref_description="SGN-E298350 [cLET-41-D15]">
      <seq>aaaaacaggaaaaatggaagaagcttcagtagtagcagtggacaaccaaaagccgcagcaagagaagcctcacactgatgttttgcttttcaatcgttggtcatatgatgatgttcagattgctgatatttctgttgaggattacataactgctactgctaacaagcatcctacatatacaccacacacagctgggaggtaccaagccaagcggtttagaaaggctcaatgcccaattgtggagaggttgaccaactcactgatgatgcacggaaggaacaacgggaagaagttgatggccgttcgtattattaagcatgctatggaaattatccatctgttgactgacctaaacccaatccaagtgattgttgatgctgttatcaacagtggaccaagagaagatgcaactcgtataggttctgctggtgttgtgaggcgacaagctgttgatatttctccactccgtcgtgtcaaccaagcaatatatctcctcacaactggtgcacgtgagagtgctttcaggaacatcaagaccatagcagaatgccttgcagatgaactcattaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="64957" stop="62465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64657" g_stop="64540" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64539" i_stop="63399" i_length="1141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63398" g_stop="63127" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="390" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63126" i_stop="62948" i_length="179">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62947" g_stop="62765" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="573" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E298350" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64657" e_stop="64540"/>
          <exon e_start="63398" e_stop="63127"/>
          <exon e_start="62947" e_stop="62765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAGGAAAAATGGAAGAAGCTTCAGTAGTAGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAGGTTTGTTTGTTTCCCTTTCAATTTTATTCCTCTCCAGTTCCTATATCTTTTCATTATTTGCCTAACATTAATGTCGAATTGGATGAAACTTGGCATTTTCGAAATCATAAGATGAACATTTGAATTATTTTGTTTCTTGCGTTAGCTAAACTCTAATTGTAGTGTAGCAGAGGTGATATATCAGTAAGGGTGGGCATGGTAGGGTAGATACCGAAACCAAAATTTTTCACTCAATGGTTTCAATATCATGACATTTGATATTATTTATAATGTATATCGAATCACCAAATACTTTAACAGAGTGTATAGTTAGGTATCCAATTCATTTATCGTATTATAATACTAACAAATATATTAACTAGTATTAGTTCAAAGTTGTTTAGACATTGAAAGCTTTGACTACTCTTTTCTTGTTAGAATTGTCCTTTTTGTGTAATTGATTAAGTGATGGAATTGCTTCTTCTTTCTTTTGAATATTTTTACATGAGTAAGATCTTTATATGATATAATTAAGAAGTTTCTAAAGAAACCAAAACATAATTCTCTATTTATATGAGTATATGTAAGTCGAAGTCGAACAAACAATGGTTACCAACCAAAAGTTAAAAAGTATCGGCACATAATGGTTTAATTTGATATGGTAATGGTATAGTACTTTTAAAAATCAAAATTATTGAACCAAAGTTTTCAATATTGTATCATACCTTTCCATGCTCATCCCTACATATCAGTTCTCAAGTCCAATGCATTGAATACTTAACCATGGTTAGGAAACTTGAAACACTATGCACGACACTGCTTAGGTATGTCTATCAACTATAAAGCCTGCTGGCTTGATCTTCTTATTCAAAGAAACATGCATGCTAAACATGATATGATTAAGTTGAACAGAATAGTGTTGGTTTCCCCAATCCATAACAAGCCAACTGGGACAACCTTACAGAAGGTGTGCCTATTCATCATTGTTGCCTTGTAAATGATGGATTTATACAACTGAAAATTACTTGCTGAGAGTTCAGGGAAATCCTTGTTGGTTAAGTTGGAAATGTAATTGTAGGTGGATTCTTCATTGGAATGCTCAAAGGAGAAATTCAGTATATGATCTCTTGAATTCTCTCTTAAATGTTATTATCTCATGCAGATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAGGTTTAGAGATTATTCTGATTTTTGCATATTTATTAGCTCGAGTTTTTCTTGCTGAGGTCTTGTTAATTAGAAGATTTTCATACCATGTCTTCTTTGTTCCATTTCCATGTCGCGGCATACTTGAGATATTGTAGTCATTCTCATTTTTTCCTTCCCATATTCTTACCTATGTGATGCAGTGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATTTCTCCACTCCGTCGTGTCAACCAAGCAATATATCTCCTCACAACTGGTGCACGTGAGAGTGCTTTCAGGAACATCAAGACCATAGCAGAATGCCTTGCAGATGAACTCATTAATGC</genome_strand>
        <mrna_strand>AAAAACAGGAAAAATGGAAGAAGCTTCAGTAGTAGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAG...................................................................................................................................................................................TGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATTTCTCCACTCCGTCGTGTCAACCAAGCAATATATCTCCTCACAACTGGTGCACGTGAGAGTGCTTTCAGGAACATCAAGACCATAGCAGAATGCCTTGCAGATGAACTCATTAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569250" ref_strand="+" ref_description="SGN-E569250 [13660]">
      <seq>cttaaaccccgctcagaaaagaggaaaaaatggaagcttcagtagtagcagtggacaaccaaaagcagcagcaagagaagcctcacactgatgttttgcttttcaatcgttggtcatatgacgacgttcagattagtgatatttctgttgaggattacataactgctactgctaacaagcatcctacatatacgccacacacggctgggaggtaccaagccaagcggtttagaaaggctcagtgcccaattgtggagaggttgaccaactcactgatgatgcacggaaggaacaacgggaagaagttgatggctgttcgtattattaagcatgctatggaaattatccatctgttgactgacctagacccaatccaagtgattgttgatgctgttatcaacagtggaccaagagaagatgcaactcgtataggttctgctggtgttgtgaggcgacaggctgttgatatttctccactccgtcgtgttaaccaggcaatatatctcctcacaactggtgcacgtgagagttctttcaggaacatcaagaccatagcagaatgccttgcagatgaactcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="64938" stop="62466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64637" g_stop="64540" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="131" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64539" i_stop="63399" i_length="1141">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63398" g_stop="63127" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="403" r_length="272" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63126" i_stop="62948" i_length="179">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62947" g_stop="62766" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="585" r_length="182" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E569250" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E569250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64637" e_stop="64540"/>
          <exon e_start="63398" e_stop="63127"/>
          <exon e_start="62947" e_stop="62766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAGTAGTAGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAGGTTTGTTTGTTTCCCTTTCAATTTTATTCCTCTCCAGTTCCTATATCTTTTCATTATTTGCCTAACATTAATGTCGAATTGGATGAAACTTGGCATTTTCGAAATCATAAGATGAACATTTGAATTATTTTGTTTCTTGCGTTAGCTAAACTCTAATTGTAGTGTAGCAGAGGTGATATATCAGTAAGGGTGGGCATGGTAGGGTAGATACCGAAACCAAAATTTTTCACTCAATGGTTTCAATATCATGACATTTGATATTATTTATAATGTATATCGAATCACCAAATACTTTAACAGAGTGTATAGTTAGGTATCCAATTCATTTATCGTATTATAATACTAACAAATATATTAACTAGTATTAGTTCAAAGTTGTTTAGACATTGAAAGCTTTGACTACTCTTTTCTTGTTAGAATTGTCCTTTTTGTGTAATTGATTAAGTGATGGAATTGCTTCTTCTTTCTTTTGAATATTTTTACATGAGTAAGATCTTTATATGATATAATTAAGAAGTTTCTAAAGAAACCAAAACATAATTCTCTATTTATATGAGTATATGTAAGTCGAAGTCGAACAAACAATGGTTACCAACCAAAAGTTAAAAAGTATCGGCACATAATGGTTTAATTTGATATGGTAATGGTATAGTACTTTTAAAAATCAAAATTATTGAACCAAAGTTTTCAATATTGTATCATACCTTTCCATGCTCATCCCTACATATCAGTTCTCAAGTCCAATGCATTGAATACTTAACCATGGTTAGGAAACTTGAAACACTATGCACGACACTGCTTAGGTATGTCTATCAACTATAAAGCCTGCTGGCTTGATCTTCTTATTCAAAGAAACATGCATGCTAAACATGATATGATTAAGTTGAACAGAATAGTGTTGGTTTCCCCAATCCATAACAAGCCAACTGGGACAACCTTACAGAAGGTGTGCCTATTCATCATTGTTGCCTTGTAAATGATGGATTTATACAACTGAAAATTACTTGCTGAGAGTTCAGGGAAATCCTTGTTGGTTAAGTTGGAAATGTAATTGTAGGTGGATTCTTCATTGGAATGCTCAAAGGAGAAATTCAGTATATGATCTCTTGAATTCTCTCTTAAATGTTATTATCTCATGCAGATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAGGTTTAGAGATTATTCTGATTTTTGCATATTTATTAGCTCGAGTTTTTCTTGCTGAGGTCTTGTTAATTAGAAGATTTTCATACCATGTCTTCTTTGTTCCATTTCCATGTCGCGGCATACTTGAGATATTGTAGTCATTCTCATTTTTTCCTTCCCATATTCTTACCTATGTGATGCAGTGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATTTCTCCACTCCGTCGTGTCAACCAAGCAATATATCTCCTCACAACTGGTGCACGTGAGAGTGCTTTCAGGAACATCAAGACCATAGCAGAATGCCTTGCAGATGAACTCATTAATG</genome_strand>
        <mrna_strand>AAGCTTCAGTAGTAGCAGTGGACAACCAAAAGCAGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGACGACGTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACGCCACACACGGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAGTGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCTGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAGACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAG...................................................................................................................................................................................TGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAGGCTGTTGATATTTCTCCACTCCGTCGTGTTAACCAGGCAATATATCTCCTCACAACTGGTGCACGTGAGAGTTCTTTCAGGAACATCAAGACCATAGCAGAATGCCTTGCAGATGAACTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338649" ref_strand="+" ref_description="SGN-E338649 [cTOE-15-L9]">
      <seq>aaatggaagaagcttcagtagtagcagtggaccaaccaaaagccgcagcaagagaagcctcacactgatgttttgcttttcaatcgttggtcatatgatgatgttcagattgctgatatttctgttgaggattacataactgctactgctaacaagcatcctacatataccaccacacacagctgggaggtacccaagccaagcggtttagaaaggctcaatgcccaattgtggagaggttgaccaactcactgatgatgcacggaaggaacaacgggaagaagttgatggccgttcgtattattaagcatgctatggaaattatccatctgttgactgacctaaacccaatccaagtgattgttgatgctgttatcaacagtggaccaagagaagatgcaactcgtataggttctgctggtgttgtgaggcgacaagctgttgatatttctccactccgtcgtgtcaaccaagcaatatatctcctcacaactggtgcacgtgagagtgctttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="64946" stop="62514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64646" g_stop="64540" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64539" i_stop="63399" i_length="1141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63398" g_stop="63127" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="382" r_length="274" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63126" i_stop="62948" i_length="179">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62947" g_stop="62814" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="516" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E338649" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64646" e_stop="64540"/>
          <exon e_start="63398" e_stop="63127"/>
          <exon e_start="62947" e_stop="62814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGAAGAAGCTTCAGTAGTAGCAGTGGA-CAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAGGTTTGTTTGTTTCCCTTTCAATTTTATTCCTCTCCAGTTCCTATATCTTTTCATTATTTGCCTAACATTAATGTCGAATTGGATGAAACTTGGCATTTTCGAAATCATAAGATGAACATTTGAATTATTTTGTTTCTTGCGTTAGCTAAACTCTAATTGTAGTGTAGCAGAGGTGATATATCAGTAAGGGTGGGCATGGTAGGGTAGATACCGAAACCAAAATTTTTCACTCAATGGTTTCAATATCATGACATTTGATATTATTTATAATGTATATCGAATCACCAAATACTTTAACAGAGTGTATAGTTAGGTATCCAATTCATTTATCGTATTATAATACTAACAAATATATTAACTAGTATTAGTTCAAAGTTGTTTAGACATTGAAAGCTTTGACTACTCTTTTCTTGTTAGAATTGTCCTTTTTGTGTAATTGATTAAGTGATGGAATTGCTTCTTCTTTCTTTTGAATATTTTTACATGAGTAAGATCTTTATATGATATAATTAAGAAGTTTCTAAAGAAACCAAAACATAATTCTCTATTTATATGAGTATATGTAAGTCGAAGTCGAACAAACAATGGTTACCAACCAAAAGTTAAAAAGTATCGGCACATAATGGTTTAATTTGATATGGTAATGGTATAGTACTTTTAAAAATCAAAATTATTGAACCAAAGTTTTCAATATTGTATCATACCTTTCCATGCTCATCCCTACATATCAGTTCTCAAGTCCAATGCATTGAATACTTAACCATGGTTAGGAAACTTGAAACACTATGCACGACACTGCTTAGGTATGTCTATCAACTATAAAGCCTGCTGGCTTGATCTTCTTATTCAAAGAAACATGCATGCTAAACATGATATGATTAAGTTGAACAGAATAGTGTTGGTTTCCCCAATCCATAACAAGCCAACTGGGACAACCTTACAGAAGGTGTGCCTATTCATCATTGTTGCCTTGTAAATGATGGATTTATACAACTGAAAATTACTTGCTGAGAGTTCAGGGAAATCCTTGTTGGTTAAGTTGGAAATGTAATTGTAGGTGGATTCTTCATTGGAATGCTCAAAGGAGAAATTCAGTATATGATCTCTTGAATTCTCTCTTAAATGTTATTATCTCATGCAGATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATA-CACCACACACAGCTGGGAGGTA-CCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAGGTTTAGAGATTATTCTGATTTTTGCATATTTATTAGCTCGAGTTTTTCTTGCTGAGGTCTTGTTAATTAGAAGATTTTCATACCATGTCTTCTTTGTTCCATTTCCATGTCGCGGCATACTTGAGATATTGTAGTCATTCTCATTTTTTCCTTCCCATATTCTTACCTATGTGATGCAGTGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATTTCTCCACTCCGTCGTGTCAACCAAGCAATATATCTCCTCACAACTGGTGCACGTGAGAGTGCTTTCA</genome_strand>
        <mrna_strand>AAATGGAAGAAGCTTCAGTAGTAGCAGTGGACCAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACCACCACACACAGCTGGGAGGTACCCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAG...................................................................................................................................................................................TGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATTTCTCCACTCCGTCGTGTCAACCAAGCAATATATCTCCTCACAACTGGTGCACGTGAGAGTGCTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550930" ref_strand="+" ref_description="SGN-E550930 [TUS-54-G24]">
      <seq>gaaaaatggaagaagcttcagtagtagcagtggacaaccaaaagccgcagcaagagaagcctcacactgatgttttgcttttcaatcgttggtcatatgatgatgttcagattgctgatatttctgttgaggattacataactgctactgctaacaagcatcctacatatacaccacacacagctgggaggtaccaagccaagcggtttagaaaggctcaatgcccaattgtggagaggttgaccaactcactgatgatgcacggaaggaacaacgggaagaagttgatggccgttcgtattattaagcatgctatggaaattatccatctgttgactgacctaaacccaatccaagtgattgttgatgctgttatcaacagtggaccaagagaagatgcaactcgtataggttctgctggtgttgtgaggcgacnagctgttgatatttctccactccgtcgtgggtcaccagcatatatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="64949" stop="62565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64649" g_stop="64540" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64539" i_stop="63399" i_length="1141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63398" g_stop="63127" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="382" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63126" i_stop="62948" i_length="179">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62947" g_stop="62845" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="484" r_length="102" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E550930" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64649" e_stop="64540"/>
          <exon e_start="63398" e_stop="63127"/>
          <exon e_start="62947" e_stop="62845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATGGAAGAAGCTTCAGTAGTAGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAGGTTTGTTTGTTTCCCTTTCAATTTTATTCCTCTCCAGTTCCTATATCTTTTCATTATTTGCCTAACATTAATGTCGAATTGGATGAAACTTGGCATTTTCGAAATCATAAGATGAACATTTGAATTATTTTGTTTCTTGCGTTAGCTAAACTCTAATTGTAGTGTAGCAGAGGTGATATATCAGTAAGGGTGGGCATGGTAGGGTAGATACCGAAACCAAAATTTTTCACTCAATGGTTTCAATATCATGACATTTGATATTATTTATAATGTATATCGAATCACCAAATACTTTAACAGAGTGTATAGTTAGGTATCCAATTCATTTATCGTATTATAATACTAACAAATATATTAACTAGTATTAGTTCAAAGTTGTTTAGACATTGAAAGCTTTGACTACTCTTTTCTTGTTAGAATTGTCCTTTTTGTGTAATTGATTAAGTGATGGAATTGCTTCTTCTTTCTTTTGAATATTTTTACATGAGTAAGATCTTTATATGATATAATTAAGAAGTTTCTAAAGAAACCAAAACATAATTCTCTATTTATATGAGTATATGTAAGTCGAAGTCGAACAAACAATGGTTACCAACCAAAAGTTAAAAAGTATCGGCACATAATGGTTTAATTTGATATGGTAATGGTATAGTACTTTTAAAAATCAAAATTATTGAACCAAAGTTTTCAATATTGTATCATACCTTTCCATGCTCATCCCTACATATCAGTTCTCAAGTCCAATGCATTGAATACTTAACCATGGTTAGGAAACTTGAAACACTATGCACGACACTGCTTAGGTATGTCTATCAACTATAAAGCCTGCTGGCTTGATCTTCTTATTCAAAGAAACATGCATGCTAAACATGATATGATTAAGTTGAACAGAATAGTGTTGGTTTCCCCAATCCATAACAAGCCAACTGGGACAACCTTACAGAAGGTGTGCCTATTCATCATTGTTGCCTTGTAAATGATGGATTTATACAACTGAAAATTACTTGCTGAGAGTTCAGGGAAATCCTTGTTGGTTAAGTTGGAAATGTAATTGTAGGTGGATTCTTCATTGGAATGCTCAAAGGAGAAATTCAGTATATGATCTCTTGAATTCTCTCTTAAATGTTATTATCTCATGCAGATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAGGTTTAGAGATTATTCTGATTTTTGCATATTTATTAGCTCGAGTTTTTCTTGCTGAGGTCTTGTTAATTAGAAGATTTTCATACCATGTCTTCTTTGTTCCATTTCCATGTCGCGGCATACTTGAGATATTGTAGTCATTCTCATTTTTTCCTTCCCATATTCTTACCTATGTGATGCAGTGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATTTCTCCACTCCGTCGTGTCAACCAAGCAATATATCTC</genome_strand>
        <mrna_strand>GAAAAATGGAAGAAGCTTCAGTAGTAGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAG...................................................................................................................................................................................TGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACNAGCTGTTGATATTTCTCCACTCCGTCGTGGGTCACCAGC-ATATATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688685" ref_strand="+" ref_description="SGN-E688685 [t3_tus_54_G24]">
      <seq>gaaaaatggaagaagcttcagtagtagcagtggacaaccaaaagccgcagcaagagaagcctcacactgatgttttgcttttcaatcgttggtcatatgatgatgttcagattgctgatatttctgttgaggattacataactgctactgctaacaagcatcctacatatacaccacacacagctgggaggtaccaagccaagcggtttagaaaggctcaatgcccaattgtggagaggttgaccaactcactgatgatgcacggaaggaacaacgggaagaagttgatggccgttcgtattattaagcatgctatggaaattatccatctgttgactgacctaaacccaatccaagtgattgttgatgctgttatcaacagtggaccaagagaagatgcaactcgtataggttctgctggtgttgtgaggcgacnagctgttgatatttctccactccgtcgtgtcaacccagcatatatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="64949" stop="62545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64649" g_stop="64540" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64539" i_stop="63399" i_length="1141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63398" g_stop="63127" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="382" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63126" i_stop="62948" i_length="179">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62947" g_stop="62845" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="484" r_length="102" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E688685" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64649" e_stop="64540"/>
          <exon e_start="63398" e_stop="63127"/>
          <exon e_start="62947" e_stop="62845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATGGAAGAAGCTTCAGTAGTAGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAGGTTTGTTTGTTTCCCTTTCAATTTTATTCCTCTCCAGTTCCTATATCTTTTCATTATTTGCCTAACATTAATGTCGAATTGGATGAAACTTGGCATTTTCGAAATCATAAGATGAACATTTGAATTATTTTGTTTCTTGCGTTAGCTAAACTCTAATTGTAGTGTAGCAGAGGTGATATATCAGTAAGGGTGGGCATGGTAGGGTAGATACCGAAACCAAAATTTTTCACTCAATGGTTTCAATATCATGACATTTGATATTATTTATAATGTATATCGAATCACCAAATACTTTAACAGAGTGTATAGTTAGGTATCCAATTCATTTATCGTATTATAATACTAACAAATATATTAACTAGTATTAGTTCAAAGTTGTTTAGACATTGAAAGCTTTGACTACTCTTTTCTTGTTAGAATTGTCCTTTTTGTGTAATTGATTAAGTGATGGAATTGCTTCTTCTTTCTTTTGAATATTTTTACATGAGTAAGATCTTTATATGATATAATTAAGAAGTTTCTAAAGAAACCAAAACATAATTCTCTATTTATATGAGTATATGTAAGTCGAAGTCGAACAAACAATGGTTACCAACCAAAAGTTAAAAAGTATCGGCACATAATGGTTTAATTTGATATGGTAATGGTATAGTACTTTTAAAAATCAAAATTATTGAACCAAAGTTTTCAATATTGTATCATACCTTTCCATGCTCATCCCTACATATCAGTTCTCAAGTCCAATGCATTGAATACTTAACCATGGTTAGGAAACTTGAAACACTATGCACGACACTGCTTAGGTATGTCTATCAACTATAAAGCCTGCTGGCTTGATCTTCTTATTCAAAGAAACATGCATGCTAAACATGATATGATTAAGTTGAACAGAATAGTGTTGGTTTCCCCAATCCATAACAAGCCAACTGGGACAACCTTACAGAAGGTGTGCCTATTCATCATTGTTGCCTTGTAAATGATGGATTTATACAACTGAAAATTACTTGCTGAGAGTTCAGGGAAATCCTTGTTGGTTAAGTTGGAAATGTAATTGTAGGTGGATTCTTCATTGGAATGCTCAAAGGAGAAATTCAGTATATGATCTCTTGAATTCTCTCTTAAATGTTATTATCTCATGCAGATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAGGTTTAGAGATTATTCTGATTTTTGCATATTTATTAGCTCGAGTTTTTCTTGCTGAGGTCTTGTTAATTAGAAGATTTTCATACCATGTCTTCTTTGTTCCATTTCCATGTCGCGGCATACTTGAGATATTGTAGTCATTCTCATTTTTTCCTTCCCATATTCTTACCTATGTGATGCAGTGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATTTCTCCACTCCGTCGTGTCAACCAAGCAATATATCTC</genome_strand>
        <mrna_strand>GAAAAATGGAAGAAGCTTCAGTAGTAGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAG...................................................................................................................................................................................TGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACNAGCTGTTGATATTTCTCCACTCCGTCGTGTCAACCCAGC-ATATATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269754" ref_strand="+" ref_description="SGN-E269754 [cLEM-17-F8]">
      <seq>aaaaatggaagatgcttcagtagttgcagtggacaaccaaaagccgcagcaagagaagcctcacactgatgttttgcttttcaatcgttggtcatatgatgatgttcagattgctgatatttctgttgaggattacataactgctactgctaacaagcatcctacatatacaccacacacagctgggaggtaccaagccaagcggtttagaaaggctcaatgcccaattgtggagaggttgaccaactcactgatgatgcacggaaggaacaacgggaagaagttgatggccgttcgtattattaagcatgctatggaaattatccatctgttgactgacctaaacccaatccaagtgattgttgatgctgttatcaacagtggaccaagagaagatgcaactcgtataggttctgctggtgttgtgaggcgacaagctgttgatatttctccactccgtcgtgtcaaccaagcaatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="64948" stop="62549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64648" g_stop="64540" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64539" i_stop="63399" i_length="1141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63398" g_stop="63127" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="381" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63126" i_stop="62948" i_length="179">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62947" g_stop="62849" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="480" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E269754" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64648" e_stop="64540"/>
          <exon e_start="63398" e_stop="63127"/>
          <exon e_start="62947" e_stop="62849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGAAGAAGCTTCAGTAGTAGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAGGTTTGTTTGTTTCCCTTTCAATTTTATTCCTCTCCAGTTCCTATATCTTTTCATTATTTGCCTAACATTAATGTCGAATTGGATGAAACTTGGCATTTTCGAAATCATAAGATGAACATTTGAATTATTTTGTTTCTTGCGTTAGCTAAACTCTAATTGTAGTGTAGCAGAGGTGATATATCAGTAAGGGTGGGCATGGTAGGGTAGATACCGAAACCAAAATTTTTCACTCAATGGTTTCAATATCATGACATTTGATATTATTTATAATGTATATCGAATCACCAAATACTTTAACAGAGTGTATAGTTAGGTATCCAATTCATTTATCGTATTATAATACTAACAAATATATTAACTAGTATTAGTTCAAAGTTGTTTAGACATTGAAAGCTTTGACTACTCTTTTCTTGTTAGAATTGTCCTTTTTGTGTAATTGATTAAGTGATGGAATTGCTTCTTCTTTCTTTTGAATATTTTTACATGAGTAAGATCTTTATATGATATAATTAAGAAGTTTCTAAAGAAACCAAAACATAATTCTCTATTTATATGAGTATATGTAAGTCGAAGTCGAACAAACAATGGTTACCAACCAAAAGTTAAAAAGTATCGGCACATAATGGTTTAATTTGATATGGTAATGGTATAGTACTTTTAAAAATCAAAATTATTGAACCAAAGTTTTCAATATTGTATCATACCTTTCCATGCTCATCCCTACATATCAGTTCTCAAGTCCAATGCATTGAATACTTAACCATGGTTAGGAAACTTGAAACACTATGCACGACACTGCTTAGGTATGTCTATCAACTATAAAGCCTGCTGGCTTGATCTTCTTATTCAAAGAAACATGCATGCTAAACATGATATGATTAAGTTGAACAGAATAGTGTTGGTTTCCCCAATCCATAACAAGCCAACTGGGACAACCTTACAGAAGGTGTGCCTATTCATCATTGTTGCCTTGTAAATGATGGATTTATACAACTGAAAATTACTTGCTGAGAGTTCAGGGAAATCCTTGTTGGTTAAGTTGGAAATGTAATTGTAGGTGGATTCTTCATTGGAATGCTCAAAGGAGAAATTCAGTATATGATCTCTTGAATTCTCTCTTAAATGTTATTATCTCATGCAGATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAGGTTTAGAGATTATTCTGATTTTTGCATATTTATTAGCTCGAGTTTTTCTTGCTGAGGTCTTGTTAATTAGAAGATTTTCATACCATGTCTTCTTTGTTCCATTTCCATGTCGCGGCATACTTGAGATATTGTAGTCATTCTCATTTTTTCCTTCCCATATTCTTACCTATGTGATGCAGTGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATTTCTCCACTCCGTCGTGTCAACCAAGCAATATA</genome_strand>
        <mrna_strand>AAAAATGGAAGATGCTTCAGTAGTTGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAG...................................................................................................................................................................................TGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATTTCTCCACTCCGTCGTGTCAACCAAGCAATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248667" ref_strand="+" ref_description="SGN-E248667 [cLEF-58-I17]">
      <seq>gagcttagacctatcagaaaaacaggaaaaatggaagaagcttcagtagtagcagtggacaaccaaaagccgcagcaagagaagcctcacacctgatgttttgcttttcaatcgttggtcatatgatgatgttcagattgctgatatttctgttgaggattacataactgctactgctaacaagcatcctacatatacaccacacacagctgggaggtaccaagccaagcggtttagaaaggctcaatgcccaattgtggagaggttgaccaactcactgatgatgcacggaaggaacaacgggaagaagttgatggccgttcgtattattaagcatgctatggaaattatccatctgttgactgacctaaacccaatccaagtgattgttgatgctgttatcaacagtggaccaagagaagatgcaactcgtataggttctgctggtgttgtgaggcgacaagctgttgatatttctccactccgtcgtgtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="64971" stop="62561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64674" g_stop="64540" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64539" i_stop="63399" i_length="1141">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63398" g_stop="63127" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="408" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63126" i_stop="62948" i_length="179">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62947" g_stop="62861" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="495" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E248667" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64674" e_stop="64540"/>
          <exon e_start="63398" e_stop="63127"/>
          <exon e_start="62947" e_stop="62861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTAGACCTATCAGAAAAACAGGAAAAATGGAAGAAGCTTCAGTAGTAGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACA-CTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAGGTTTGTTTGTTTCCCTTTCAATTTTATTCCTCTCCAGTTCCTATATCTTTTCATTATTTGCCTAACATTAATGTCGAATTGGATGAAACTTGGCATTTTCGAAATCATAAGATGAACATTTGAATTATTTTGTTTCTTGCGTTAGCTAAACTCTAATTGTAGTGTAGCAGAGGTGATATATCAGTAAGGGTGGGCATGGTAGGGTAGATACCGAAACCAAAATTTTTCACTCAATGGTTTCAATATCATGACATTTGATATTATTTATAATGTATATCGAATCACCAAATACTTTAACAGAGTGTATAGTTAGGTATCCAATTCATTTATCGTATTATAATACTAACAAATATATTAACTAGTATTAGTTCAAAGTTGTTTAGACATTGAAAGCTTTGACTACTCTTTTCTTGTTAGAATTGTCCTTTTTGTGTAATTGATTAAGTGATGGAATTGCTTCTTCTTTCTTTTGAATATTTTTACATGAGTAAGATCTTTATATGATATAATTAAGAAGTTTCTAAAGAAACCAAAACATAATTCTCTATTTATATGAGTATATGTAAGTCGAAGTCGAACAAACAATGGTTACCAACCAAAAGTTAAAAAGTATCGGCACATAATGGTTTAATTTGATATGGTAATGGTATAGTACTTTTAAAAATCAAAATTATTGAACCAAAGTTTTCAATATTGTATCATACCTTTCCATGCTCATCCCTACATATCAGTTCTCAAGTCCAATGCATTGAATACTTAACCATGGTTAGGAAACTTGAAACACTATGCACGACACTGCTTAGGTATGTCTATCAACTATAAAGCCTGCTGGCTTGATCTTCTTATTCAAAGAAACATGCATGCTAAACATGATATGATTAAGTTGAACAGAATAGTGTTGGTTTCCCCAATCCATAACAAGCCAACTGGGACAACCTTACAGAAGGTGTGCCTATTCATCATTGTTGCCTTGTAAATGATGGATTTATACAACTGAAAATTACTTGCTGAGAGTTCAGGGAAATCCTTGTTGGTTAAGTTGGAAATGTAATTGTAGGTGGATTCTTCATTGGAATGCTCAAAGGAGAAATTCAGTATATGATCTCTTGAATTCTCTCTTAAATGTTATTATCTCATGCAGATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAGGTTTAGAGATTATTCTGATTTTTGCATATTTATTAGCTCGAGTTTTTCTTGCTGAGGTCTTGTTAATTAGAAGATTTTCATACCATGTCTTCTTTGTTCCATTTCCATGTCGCGGCATACTTGAGATATTGTAGTCATTCTCATTTTTTCCTTCCCATATTCTTACCTATGTGATGCAGTGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATTTCTCCACTCCGTCGTGTCAA</genome_strand>
        <mrna_strand>GAGCTTAGACCTATCAGAAAAACAGGAAAAATGGAAGAAGCTTCAGTAGTAGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACCTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAG...................................................................................................................................................................................TGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATTTCTCCACTCCGTCGTGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286676" ref_strand="+" ref_description="SGN-E286676 [cLES-14-G11]">
      <seq>gaaaaatggaagaagcttcagtagtagcagtggacaaccaaaagccgcagcaagagaagcctcacactgatgttttgcttttcaatcgttggtcatatgatgatgttcagattgctgatatttctgttgaggattacataactgctactgctaacaagcatcctacatatacaccacacacagctgggaggtaccaagccaagcggtttagaaaggctcaatgcccaattgtggagaggttgaccaactcactgatgatgcacggaaggaacaacgggaagaagttgatggccgttcgtattattaagcatgctatggaaattatccatctgttgactgacctaaacccaatccaagtgattgttgatgctgttatcaacagtggaccaagagaagatgcaactcgtataggttctgctggtgttgtgaggcgacaagctgttgatatttctccactccgtcgtgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="64949" stop="62563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64649" g_stop="64540" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64539" i_stop="63399" i_length="1141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63398" g_stop="63127" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="382" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63126" i_stop="62948" i_length="179">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62947" g_stop="62863" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="467" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E286676" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64649" e_stop="64540"/>
          <exon e_start="63398" e_stop="63127"/>
          <exon e_start="62947" e_stop="62863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATGGAAGAAGCTTCAGTAGTAGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAGGTTTGTTTGTTTCCCTTTCAATTTTATTCCTCTCCAGTTCCTATATCTTTTCATTATTTGCCTAACATTAATGTCGAATTGGATGAAACTTGGCATTTTCGAAATCATAAGATGAACATTTGAATTATTTTGTTTCTTGCGTTAGCTAAACTCTAATTGTAGTGTAGCAGAGGTGATATATCAGTAAGGGTGGGCATGGTAGGGTAGATACCGAAACCAAAATTTTTCACTCAATGGTTTCAATATCATGACATTTGATATTATTTATAATGTATATCGAATCACCAAATACTTTAACAGAGTGTATAGTTAGGTATCCAATTCATTTATCGTATTATAATACTAACAAATATATTAACTAGTATTAGTTCAAAGTTGTTTAGACATTGAAAGCTTTGACTACTCTTTTCTTGTTAGAATTGTCCTTTTTGTGTAATTGATTAAGTGATGGAATTGCTTCTTCTTTCTTTTGAATATTTTTACATGAGTAAGATCTTTATATGATATAATTAAGAAGTTTCTAAAGAAACCAAAACATAATTCTCTATTTATATGAGTATATGTAAGTCGAAGTCGAACAAACAATGGTTACCAACCAAAAGTTAAAAAGTATCGGCACATAATGGTTTAATTTGATATGGTAATGGTATAGTACTTTTAAAAATCAAAATTATTGAACCAAAGTTTTCAATATTGTATCATACCTTTCCATGCTCATCCCTACATATCAGTTCTCAAGTCCAATGCATTGAATACTTAACCATGGTTAGGAAACTTGAAACACTATGCACGACACTGCTTAGGTATGTCTATCAACTATAAAGCCTGCTGGCTTGATCTTCTTATTCAAAGAAACATGCATGCTAAACATGATATGATTAAGTTGAACAGAATAGTGTTGGTTTCCCCAATCCATAACAAGCCAACTGGGACAACCTTACAGAAGGTGTGCCTATTCATCATTGTTGCCTTGTAAATGATGGATTTATACAACTGAAAATTACTTGCTGAGAGTTCAGGGAAATCCTTGTTGGTTAAGTTGGAAATGTAATTGTAGGTGGATTCTTCATTGGAATGCTCAAAGGAGAAATTCAGTATATGATCTCTTGAATTCTCTCTTAAATGTTATTATCTCATGCAGATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAGGTTTAGAGATTATTCTGATTTTTGCATATTTATTAGCTCGAGTTTTTCTTGCTGAGGTCTTGTTAATTAGAAGATTTTCATACCATGTCTTCTTTGTTCCATTTCCATGTCGCGGCATACTTGAGATATTGTAGTCATTCTCATTTTTTCCTTCCCATATTCTTACCTATGTGATGCAGTGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATTTCTCCACTCCGTCGTGTC</genome_strand>
        <mrna_strand>GAAAAATGGAAGAAGCTTCAGTAGTAGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAG...................................................................................................................................................................................TGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATTTCTCCACTCCGTCGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277497" ref_strand="+" ref_description="SGN-E277497 [cLER-3-B13]">
      <seq>aaaaacaggaaaaatggaagaagcttcagtagtagcagtggacaaccaaaagccgcagcaagagaagcctcacactgatgttttgcttttcaatcgttggtcatatgatgatgttcagattgctgatatttctgttgaggattacataactgctactgctaacaagcatcctacatatacaccacacacagctgggaggtaccaagccaagcggtttagaaaggctcaatgcccaattgtggagaggttgaccaactcactgatgatgcacggaaggaacaacgggaagaagttgatggccgttcgtattattaagcatgctatggaaattatccatctgttgactgacctaaacccaatccaagtgattgttgatgctgttatcaacagtggaccaagagaagatgcaactcgtataggttctgctggtgttgtgaggcgacaagctgttgatatttctccactccgtcgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="64957" stop="62564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64657" g_stop="64540" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64539" i_stop="63399" i_length="1141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63398" g_stop="63127" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="390" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63126" i_stop="62948" i_length="179">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62947" g_stop="62864" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="474" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E277497" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64657" e_stop="64540"/>
          <exon e_start="63398" e_stop="63127"/>
          <exon e_start="62947" e_stop="62864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAGGAAAAATGGAAGAAGCTTCAGTAGTAGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAGGTTTGTTTGTTTCCCTTTCAATTTTATTCCTCTCCAGTTCCTATATCTTTTCATTATTTGCCTAACATTAATGTCGAATTGGATGAAACTTGGCATTTTCGAAATCATAAGATGAACATTTGAATTATTTTGTTTCTTGCGTTAGCTAAACTCTAATTGTAGTGTAGCAGAGGTGATATATCAGTAAGGGTGGGCATGGTAGGGTAGATACCGAAACCAAAATTTTTCACTCAATGGTTTCAATATCATGACATTTGATATTATTTATAATGTATATCGAATCACCAAATACTTTAACAGAGTGTATAGTTAGGTATCCAATTCATTTATCGTATTATAATACTAACAAATATATTAACTAGTATTAGTTCAAAGTTGTTTAGACATTGAAAGCTTTGACTACTCTTTTCTTGTTAGAATTGTCCTTTTTGTGTAATTGATTAAGTGATGGAATTGCTTCTTCTTTCTTTTGAATATTTTTACATGAGTAAGATCTTTATATGATATAATTAAGAAGTTTCTAAAGAAACCAAAACATAATTCTCTATTTATATGAGTATATGTAAGTCGAAGTCGAACAAACAATGGTTACCAACCAAAAGTTAAAAAGTATCGGCACATAATGGTTTAATTTGATATGGTAATGGTATAGTACTTTTAAAAATCAAAATTATTGAACCAAAGTTTTCAATATTGTATCATACCTTTCCATGCTCATCCCTACATATCAGTTCTCAAGTCCAATGCATTGAATACTTAACCATGGTTAGGAAACTTGAAACACTATGCACGACACTGCTTAGGTATGTCTATCAACTATAAAGCCTGCTGGCTTGATCTTCTTATTCAAAGAAACATGCATGCTAAACATGATATGATTAAGTTGAACAGAATAGTGTTGGTTTCCCCAATCCATAACAAGCCAACTGGGACAACCTTACAGAAGGTGTGCCTATTCATCATTGTTGCCTTGTAAATGATGGATTTATACAACTGAAAATTACTTGCTGAGAGTTCAGGGAAATCCTTGTTGGTTAAGTTGGAAATGTAATTGTAGGTGGATTCTTCATTGGAATGCTCAAAGGAGAAATTCAGTATATGATCTCTTGAATTCTCTCTTAAATGTTATTATCTCATGCAGATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAGGTTTAGAGATTATTCTGATTTTTGCATATTTATTAGCTCGAGTTTTTCTTGCTGAGGTCTTGTTAATTAGAAGATTTTCATACCATGTCTTCTTTGTTCCATTTCCATGTCGCGGCATACTTGAGATATTGTAGTCATTCTCATTTTTTCCTTCCCATATTCTTACCTATGTGATGCAGTGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATTTCTCCACTCCGTCGTGT</genome_strand>
        <mrna_strand>AAAAACAGGAAAAATGGAAGAAGCTTCAGTAGTAGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAG...................................................................................................................................................................................TGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATTTCTCCACTCCGTCGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295487" ref_strand="+" ref_description="SGN-E295487 [cLET-23-G22]">
      <seq>aaaaacaggaaaaatggaagaagcttcagtagtagcagtggacaaccaaaagccgcagcaagagaagcctcacactgatgttttgcttttcaatcgttggtcatatgatgatgttcagattgctgatatttctgttgaggattacataactgctactgctaacaagcatcctacatatacaccacacacagctgggaggtaccaagccaagcggtttagaaaggctcaatgcccaattgtggagaggttgaccaactcactgatgatgcacggaaggaacaacgggaagaagttgatggccgttcgtattattaagcatgctatggaaattatccatctgttgactgacctaaacccaatccaagtgattgttgatgctgttatcaacagtggaccaagagaagatgcaactcgtataggttctgctggtgttgtgaggcgacaagctgttgatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="64957" stop="62581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64657" g_stop="64540" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64539" i_stop="63399" i_length="1141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63398" g_stop="63127" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="390" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63126" i_stop="62948" i_length="179">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62947" g_stop="62881" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="457" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E295487" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64657" e_stop="64540"/>
          <exon e_start="63398" e_stop="63127"/>
          <exon e_start="62947" e_stop="62881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAGGAAAAATGGAAGAAGCTTCAGTAGTAGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAGGTTTGTTTGTTTCCCTTTCAATTTTATTCCTCTCCAGTTCCTATATCTTTTCATTATTTGCCTAACATTAATGTCGAATTGGATGAAACTTGGCATTTTCGAAATCATAAGATGAACATTTGAATTATTTTGTTTCTTGCGTTAGCTAAACTCTAATTGTAGTGTAGCAGAGGTGATATATCAGTAAGGGTGGGCATGGTAGGGTAGATACCGAAACCAAAATTTTTCACTCAATGGTTTCAATATCATGACATTTGATATTATTTATAATGTATATCGAATCACCAAATACTTTAACAGAGTGTATAGTTAGGTATCCAATTCATTTATCGTATTATAATACTAACAAATATATTAACTAGTATTAGTTCAAAGTTGTTTAGACATTGAAAGCTTTGACTACTCTTTTCTTGTTAGAATTGTCCTTTTTGTGTAATTGATTAAGTGATGGAATTGCTTCTTCTTTCTTTTGAATATTTTTACATGAGTAAGATCTTTATATGATATAATTAAGAAGTTTCTAAAGAAACCAAAACATAATTCTCTATTTATATGAGTATATGTAAGTCGAAGTCGAACAAACAATGGTTACCAACCAAAAGTTAAAAAGTATCGGCACATAATGGTTTAATTTGATATGGTAATGGTATAGTACTTTTAAAAATCAAAATTATTGAACCAAAGTTTTCAATATTGTATCATACCTTTCCATGCTCATCCCTACATATCAGTTCTCAAGTCCAATGCATTGAATACTTAACCATGGTTAGGAAACTTGAAACACTATGCACGACACTGCTTAGGTATGTCTATCAACTATAAAGCCTGCTGGCTTGATCTTCTTATTCAAAGAAACATGCATGCTAAACATGATATGATTAAGTTGAACAGAATAGTGTTGGTTTCCCCAATCCATAACAAGCCAACTGGGACAACCTTACAGAAGGTGTGCCTATTCATCATTGTTGCCTTGTAAATGATGGATTTATACAACTGAAAATTACTTGCTGAGAGTTCAGGGAAATCCTTGTTGGTTAAGTTGGAAATGTAATTGTAGGTGGATTCTTCATTGGAATGCTCAAAGGAGAAATTCAGTATATGATCTCTTGAATTCTCTCTTAAATGTTATTATCTCATGCAGATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAGGTTTAGAGATTATTCTGATTTTTGCATATTTATTAGCTCGAGTTTTTCTTGCTGAGGTCTTGTTAATTAGAAGATTTTCATACCATGTCTTCTTTGTTCCATTTCCATGTCGCGGCATACTTGAGATATTGTAGTCATTCTCATTTTTTCCTTCCCATATTCTTACCTATGTGATGCAGTGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATT</genome_strand>
        <mrna_strand>AAAAACAGGAAAAATGGAAGAAGCTTCAGTAGTAGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAG...................................................................................................................................................................................TGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304731" ref_strand="+" ref_description="SGN-E304731 [cLEX-11-B6]">
      <seq>gaaaaatggaagaagcttcagtagtagcagtggacaaccaaaagccgcagcaagagaagcctcacactgatgttttgcttttcaatcgttggtcatatgatgatgttcagattgctgatatttctgttgaggattacataactgctactgctaacaagcatcctacatatacaccacacacagctgggaggtaccaagccaagcggtttagaaaggctcaatgcccaattgtggagaggttgaccaactcactgatgatgcacggaaggaacaacgggaagaagttgatggccgttcgtattattaagcatgctatggaaattatccatctgttgactgacctaaacccaatccaagtgattgttgatgctgttatcaacagtggaccaagagaagatgcaactcgtataggttctgctggtgttgtgaggcgacaagctgttgatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="64949" stop="62581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64649" g_stop="64540" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64539" i_stop="63399" i_length="1141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63398" g_stop="63127" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="382" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63126" i_stop="62948" i_length="179">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62947" g_stop="62881" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="449" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E304731" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64649" e_stop="64540"/>
          <exon e_start="63398" e_stop="63127"/>
          <exon e_start="62947" e_stop="62881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATGGAAGAAGCTTCAGTAGTAGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAGGTTTGTTTGTTTCCCTTTCAATTTTATTCCTCTCCAGTTCCTATATCTTTTCATTATTTGCCTAACATTAATGTCGAATTGGATGAAACTTGGCATTTTCGAAATCATAAGATGAACATTTGAATTATTTTGTTTCTTGCGTTAGCTAAACTCTAATTGTAGTGTAGCAGAGGTGATATATCAGTAAGGGTGGGCATGGTAGGGTAGATACCGAAACCAAAATTTTTCACTCAATGGTTTCAATATCATGACATTTGATATTATTTATAATGTATATCGAATCACCAAATACTTTAACAGAGTGTATAGTTAGGTATCCAATTCATTTATCGTATTATAATACTAACAAATATATTAACTAGTATTAGTTCAAAGTTGTTTAGACATTGAAAGCTTTGACTACTCTTTTCTTGTTAGAATTGTCCTTTTTGTGTAATTGATTAAGTGATGGAATTGCTTCTTCTTTCTTTTGAATATTTTTACATGAGTAAGATCTTTATATGATATAATTAAGAAGTTTCTAAAGAAACCAAAACATAATTCTCTATTTATATGAGTATATGTAAGTCGAAGTCGAACAAACAATGGTTACCAACCAAAAGTTAAAAAGTATCGGCACATAATGGTTTAATTTGATATGGTAATGGTATAGTACTTTTAAAAATCAAAATTATTGAACCAAAGTTTTCAATATTGTATCATACCTTTCCATGCTCATCCCTACATATCAGTTCTCAAGTCCAATGCATTGAATACTTAACCATGGTTAGGAAACTTGAAACACTATGCACGACACTGCTTAGGTATGTCTATCAACTATAAAGCCTGCTGGCTTGATCTTCTTATTCAAAGAAACATGCATGCTAAACATGATATGATTAAGTTGAACAGAATAGTGTTGGTTTCCCCAATCCATAACAAGCCAACTGGGACAACCTTACAGAAGGTGTGCCTATTCATCATTGTTGCCTTGTAAATGATGGATTTATACAACTGAAAATTACTTGCTGAGAGTTCAGGGAAATCCTTGTTGGTTAAGTTGGAAATGTAATTGTAGGTGGATTCTTCATTGGAATGCTCAAAGGAGAAATTCAGTATATGATCTCTTGAATTCTCTCTTAAATGTTATTATCTCATGCAGATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAGGTTTAGAGATTATTCTGATTTTTGCATATTTATTAGCTCGAGTTTTTCTTGCTGAGGTCTTGTTAATTAGAAGATTTTCATACCATGTCTTCTTTGTTCCATTTCCATGTCGCGGCATACTTGAGATATTGTAGTCATTCTCATTTTTTCCTTCCCATATTCTTACCTATGTGATGCAGTGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATT</genome_strand>
        <mrna_strand>GAAAAATGGAAGAAGCTTCAGTAGTAGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAG...................................................................................................................................................................................TGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239858" ref_strand="+" ref_description="SGN-E239858 [cLED-29-D6]">
      <seq>ttagaaaggctcaatgcccaattgtggagaggttgaccaactcactgatgatgcacggaaggaacaacgggaagaagttgatggccgttcgtattattaagcatgctatggaaattatccatctgttgactgacctaaacccaatccaagtgattgttgatgctgttatcaacagtggaccaagagaagatgcaactcgtataggttctgctggtgttgtgaggcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="63601" stop="62595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63301" g_stop="63127" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63126" i_stop="62948" i_length="179">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62947" g_stop="62895" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="228" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E239858" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>228</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63301" e_stop="63127"/>
          <exon e_start="62947" e_stop="62895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAGGTTTAGAGATTATTCTGATTTTTGCATATTTATTAGCTCGAGTTTTTCTTGCTGAGGTCTTGTTAATTAGAAGATTTTCATACCATGTCTTCTTTGTTCCATTTCCATGTCGCGGCATACTTGAGATATTGTAGTCATTCTCATTTTTTCCTTCCCATATTCTTACCTATGTGATGCAGTGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGAC</genome_strand>
        <mrna_strand>TTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAG...................................................................................................................................................................................TGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320800" ref_strand="+" ref_description="SGN-E320800 [cTOB-27-G8]">
      <seq>ttagacctatcagaaaaacaggaaaaatggaagaagcttcagtagtagcagtggacaaccaaaagccgcagcaagagaagcctcacactgatgttttgcttttcaatcgttggtcatatgatgatgttcagattgctgatatttctgttgaggattacataactgctactgctaacaagcatcctacatatacaccacacacagctgggaggtaccaagccaagcggtttagaaaggctcaatgcccaattgtggagaggttgaccaactcactgatgatgcacggaaggaacaccgggaagaagttgatggccgttcgtattattaagcatgctatggaaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="64970" stop="62885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64670" g_stop="64540" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64539" i_stop="63399" i_length="1141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63398" g_stop="63185" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="345" r_length="214" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E320800" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64670" e_stop="64540"/>
          <exon e_start="63398" e_stop="63185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGACCTATCAGAAAAACAGGAAAAATGGAAGAAGCTTCAGTAGTAGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAGGTTTGTTTGTTTCCCTTTCAATTTTATTCCTCTCCAGTTCCTATATCTTTTCATTATTTGCCTAACATTAATGTCGAATTGGATGAAACTTGGCATTTTCGAAATCATAAGATGAACATTTGAATTATTTTGTTTCTTGCGTTAGCTAAACTCTAATTGTAGTGTAGCAGAGGTGATATATCAGTAAGGGTGGGCATGGTAGGGTAGATACCGAAACCAAAATTTTTCACTCAATGGTTTCAATATCATGACATTTGATATTATTTATAATGTATATCGAATCACCAAATACTTTAACAGAGTGTATAGTTAGGTATCCAATTCATTTATCGTATTATAATACTAACAAATATATTAACTAGTATTAGTTCAAAGTTGTTTAGACATTGAAAGCTTTGACTACTCTTTTCTTGTTAGAATTGTCCTTTTTGTGTAATTGATTAAGTGATGGAATTGCTTCTTCTTTCTTTTGAATATTTTTACATGAGTAAGATCTTTATATGATATAATTAAGAAGTTTCTAAAGAAACCAAAACATAATTCTCTATTTATATGAGTATATGTAAGTCGAAGTCGAACAAACAATGGTTACCAACCAAAAGTTAAAAAGTATCGGCACATAATGGTTTAATTTGATATGGTAATGGTATAGTACTTTTAAAAATCAAAATTATTGAACCAAAGTTTTCAATATTGTATCATACCTTTCCATGCTCATCCCTACATATCAGTTCTCAAGTCCAATGCATTGAATACTTAACCATGGTTAGGAAACTTGAAACACTATGCACGACACTGCTTAGGTATGTCTATCAACTATAAAGCCTGCTGGCTTGATCTTCTTATTCAAAGAAACATGCATGCTAAACATGATATGATTAAGTTGAACAGAATAGTGTTGGTTTCCCCAATCCATAACAAGCCAACTGGGACAACCTTACAGAAGGTGTGCCTATTCATCATTGTTGCCTTGTAAATGATGGATTTATACAACTGAAAATTACTTGCTGAGAGTTCAGGGAAATCCTTGTTGGTTAAGTTGGAAATGTAATTGTAGGTGGATTCTTCATTGGAATGCTCAAAGGAGAAATTCAGTATATGATCTCTTGAATTCTCTCTTAAATGTTATTATCTCATGCAGATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTA</genome_strand>
        <mrna_strand>TTAGACCTATCAGAAAAACAGGAAAAATGGAAGAAGCTTCAGTAGTAGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACACCGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280221" ref_strand="-" ref_description="SGN-E280221 [cLEL-7-P7](-)">
      <seq>gcacgagcggcacgagcttagacctatcagaaaaacaggaaaaatggaagaagcttcagtagtagcagtgcgccaaccaaaagccgcagcaagagaagcctcacactgatgttttgcttttcaatcgttggtcatatgatgatgttcagattgctgatatttctgttgaggattacataactgctactgctaacaagcatcctacatatacaccacacacagctgggaggtaccaagccaagcggtttagaaaggctcaatgcccaattgtggagaggttgaccaactcactgatgatgcacggaaggaacaacgggaagaagttgatggccgttcgtattattaagcatgctatggaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="64971" stop="62886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64687" g_stop="64540" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64539" i_stop="63399" i_length="1141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63398" g_stop="63186" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="362" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E280221" ref_strand="-">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280221" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="64687" e_stop="64540"/>
          <exon e_start="63398" e_stop="63186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAATCGACACCTCCTTAGACCTATCAGAAAAACAGGAAAAATGGAAGAAGCTTCAGTAGTAGCAGTG-GACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAGGTTTGTTTGTTTCCCTTTCAATTTTATTCCTCTCCAGTTCCTATATCTTTTCATTATTTGCCTAACATTAATGTCGAATTGGATGAAACTTGGCATTTTCGAAATCATAAGATGAACATTTGAATTATTTTGTTTCTTGCGTTAGCTAAACTCTAATTGTAGTGTAGCAGAGGTGATATATCAGTAAGGGTGGGCATGGTAGGGTAGATACCGAAACCAAAATTTTTCACTCAATGGTTTCAATATCATGACATTTGATATTATTTATAATGTATATCGAATCACCAAATACTTTAACAGAGTGTATAGTTAGGTATCCAATTCATTTATCGTATTATAATACTAACAAATATATTAACTAGTATTAGTTCAAAGTTGTTTAGACATTGAAAGCTTTGACTACTCTTTTCTTGTTAGAATTGTCCTTTTTGTGTAATTGATTAAGTGATGGAATTGCTTCTTCTTTCTTTTGAATATTTTTACATGAGTAAGATCTTTATATGATATAATTAAGAAGTTTCTAAAGAAACCAAAACATAATTCTCTATTTATATGAGTATATGTAAGTCGAAGTCGAACAAACAATGGTTACCAACCAAAAGTTAAAAAGTATCGGCACATAATGGTTTAATTTGATATGGTAATGGTATAGTACTTTTAAAAATCAAAATTATTGAACCAAAGTTTTCAATATTGTATCATACCTTTCCATGCTCATCCCTACATATCAGTTCTCAAGTCCAATGCATTGAATACTTAACCATGGTTAGGAAACTTGAAACACTATGCACGACACTGCTTAGGTATGTCTATCAACTATAAAGCCTGCTGGCTTGATCTTCTTATTCAAAGAAACATGCATGCTAAACATGATATGATTAAGTTGAACAGAATAGTGTTGGTTTCCCCAATCCATAACAAGCCAACTGGGACAACCTTACAGAAGGTGTGCCTATTCATCATTGTTGCCTTGTAAATGATGGATTTATACAACTGAAAATTACTTGCTGAGAGTTCAGGGAAATCCTTGTTGGTTAAGTTGGAAATGTAATTGTAGGTGGATTCTTCATTGGAATGCTCAAAGGAGAAATTCAGTATATGATCTCTTGAATTCTCTCTTAAATGTTATTATCTCATGCAGATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATT</genome_strand>
        <mrna_strand>GCACGAGCGGCACGAGCTTAGACCTATCAGAAAAACAGGAAAAATGGAAGAAGCTTCAGTAGTAGCAGTGCGCCAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261540" ref_strand="+" ref_description="SGN-E261540 [cLEG-57-K8]">
      <seq>taaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctcctattgtggaaggactttaaaaactacttgaaacacaaacgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="+" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="66472" stop="67937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66771" g_stop="67468" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67469" i_stop="67540" i_length="72">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67541" g_stop="67637" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="772" r_length="98" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="+" ref_id="SGN-E261540" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.030" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66771" e_stop="67468"/>
          <exon e_start="67541" e_stop="67637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACCTTTATGGTTTTCTACTCTGCTTGAGTTTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTCTGTGTAACGATTTGTTCTTTACTGTTAGTATTTCAAATACTTAAGTTATGTGCCATTTGTGACAGAAAAAAAGAAAAAATTACTAATTCAAATCAAACAAATGTTGGAACAGTAAGTGCTACAAGAGTTTGTGCTGCAATAACATCGGTTGCACATAATAATTCAAATGCTGCCTTAGCGCCGGCTGAGAAACCTGCAAAATTTTCTGGAGTCGACTTTAAGAGATGGCAGCAGAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGCCTGATGAACGATTCTTGGTAACACAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGCCTACAAGATGATCTGTACAATGTGTACAGCAATGTCAAAACCTTAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCAGAATGAAGAAATTCATCATGGCAAAATTTCTGGACTATAAGATGATAGACAGTAAGACTGTAGTCACCCAAGTTCAAGAACTGCAGGTCATAATCCATGATCTCCTTGCTGAAGGTATAAATTTATTTAATACCTATGTTAAAAATATTAAGTTTTTCCTTAATACTCACATAATCTTCAATGTAGGATTGATTGTGAATGATGCCTTTCAAGTGGCTGCAATTATTGAAAACTTACCTCC-ATTGTTGAAGGACTTCAAAAACTACTTGAAACACAAACGCAA</genome_strand>
        <mrna_strand>TAAAACCTTTATGGTTTTCTACTCTACTTGA-ATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAG-----AA-AAAAAA-GACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGC-A-A----------CAA-CA-AT-GGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAG........................................................................GATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251204" ref_strand="+" ref_description="SGN-E251204 [cLEG-10-L14]">
      <seq>tcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctctattgtggaaggactttaaaaactacttgaaacacaaacgcaaggagatgattgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="+" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="66684" stop="67952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66983" g_stop="67468" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="496" r_length="486" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67469" i_stop="67540" i_length="72">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67541" g_stop="67652" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="608" r_length="112" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="+" ref_id="SGN-E251204" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66983" e_stop="67468"/>
          <exon e_start="67541" e_stop="67652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTGCTACAAGAGTTTGTGCTGCAATAACATCGGTTGCACATAATAATTCAAATGCTGCCTTAGCGCCGGCTGAGAAACCTGCAAAATTTTCTGGAGTCGACTTTAAGAGATGGCAGCAGAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGCCTGATGAACGATTCTTGGTAACACAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGCCTACAAGATGATCTGTACAATGTGTACAGCAATGTCAAAACCTTAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCAGAATGAAGAAATTCATCATGGCAAAATTTCTGGACTATAAGATGATAGACAGTAAGACTGTAGTCACCCAAGTTCAAGAACTGCAGGTCATAATCCATGATCTCCTTGCTGAAGGTATAAATTTATTTAATACCTATGTTAAAAATATTAAGTTTTTCCTTAATACTCACATAATCTTCAATGTAGGATTGATTGTGAATGATGCCTTTCAAGTGGCTGCAATTATTGAAAACTTACCTCCATTGTTGAAGGACTTCAAAAACTACTTGAAACACAAACGCAAGGAGATGACTGTTGA</genome_strand>
        <mrna_strand>CAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAG........................................................................GATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGATTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419244" ref_strand="-" ref_description="SGN-E419244 [STM-29-A12]">
      <seq>tcaagagatggcagcaaaagatgtctttctatctgactacattgagtctgcagaggttcattaatgagaacgttcctgttatgtcggatgaaactccgcctgaagaacgattcttggtaacagaagcatggacacattctgattttttgtgtaaaaattatattctgagtggcctgcaggatgatctatacaatgtgtacagtaatgtgaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaggatgccggaatgaagaaatttattgtggcaaagtttctggactataagatgatagacagtaagaccgtcgtcacccaagttcaagaattgcaggtcataatccatgatctccttgctgaaggattggttgtgaatgatgcttttcaagtggctgccattatagagaagttacctccattgtggaaggacttcaaaaactacttgaaacataaacgcaaggagatgactgttgaagatctcatggtaaggctgagaatcgaagaggataacaaggccgcagaaaagaggtcgcgtggtaattcagcaatatcaggagtaaatattgtgaagaagatcccacaaaatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="+" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="66787" stop="68077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67088" g_stop="67468" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67469" i_stop="67540" i_length="72">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67541" g_stop="67776" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="616" r_length="235" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="+" ref_id="SGN-E419244" ref_strand="-">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419244" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67088" e_stop="67468"/>
          <exon e_start="67541" e_stop="67776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGAGATGGCAGCAGAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGCCTGATGAACGATTCTTGGTAACACAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGCCTACAAGATGATCTGTACAATGTGTACAGCAATGTCAAAACCTTAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCAGAATGAAGAAATTCATCATGGCAAAATTTCTGGACTATAAGATGATAGACAGTAAGACTGTAGTCACCCAAGTTCAAGAACTGCAGGTCATAATCCATGATCTCCTTGCTGAAGGTATAAATTTATTTAATACCTATGTTAAAAATATTAAGTTTTTCCTTAATACTCACATAATCTTCAATGTAGGATTGATTGTGAATGATGCCTTTCAAGTGGCTGCAATTATTGAAAACTTACCTCCATTGTTGAAGGACTTCAAAAACTACTTGAAACACAAACGCAAGGAGATGACTGTTGAAGATCTCATAGTAAGGTTGAGAATCGAAGATGATAATAAGGCTGCAGAAAAGAGGTCACATCGTAATTCAACAATATTTGGAGTAAATTTTGTTGAAGAAGATCCCACAAAATTAAAAAAAAGA</genome_strand>
        <mrna_strand>TCAAGAGATGGCAGCAAAAGATGTCTTTCTATCTGACTACATTGAGTCTGCAGAGGTTCATTAATGAGAACGTTCCTGTTATGTCGGATGAAACTCCGCCTGAAGAACGATTCTTGGTAACAGAAGCATGGACACATTCTGATTTTTTGTGTAAAAATTATATTCTGAGTGGCCTGCAGGATGATCTATACAATGTGTACAGTAATGTGAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAGGATGCCGGAATGAAGAAATTTATTGTGGCAAAGTTTCTGGACTATAAGATGATAGACAGTAAGACCGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAG........................................................................GATTGGTTGTGAATGATGCTTTTCAAGTGGCTGCCATTATAGAGAAGTTACCTCCATTGTGGAAGGACTTCAAAAACTACTTGAAACATAAACGCAAGGAGATGACTGTTGAAGATCTCATGGTAAGGCTGAGAATCGAAGAGGATAACAAGGCCGCAGAAAAGAGGTCGCGTGGTAATTCAGCAATATCAGGAGTAAATATTG-TGAAGAAGATCCCACAAAATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369759" ref_strand="+" ref_description="SGN-E369759 [TUS-25-O3](-)">
      <seq>taaggttgagaatcgaagaggataataaggctgcagaaaagaggtcacgtggtaattcagcaatatctggagtaaattttgttgaagaagattccacaaaattcaagaaaagaaagaaagcatctggtccaaaacgcaatcctcctaagaagaaattcaatggaaactgctttaattgtggtaaacatggtcatagggctaatgaatgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttctgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttcttcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="+" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="67364" stop="68669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67664" g_stop="68369" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="+" ref_id="SGN-E369759" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67664" e_stop="68369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTTGAGAATCGAAGATGATAATAAGGCTGCAGAAAAGAGGTCACATCGTAATTCAACAATATTTGGAGTAAATTTTGTTGAAGAAGATCCCACAAAATTAAAAAAAAGAAAGAAAACATCTGGTCCAAAAAGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTCAACTGTGGTAAACATGGTCATAGAGCTACTGAATGCCGGGGTCCAAAGTAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTTAAAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTAATCATATACTTCAACACTTACAGATGAAAAATTGTTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGAGTCTAATATGTTCCTGAATTGATTAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGG-C--TTCAAACTCGATGTAATTGCAGTTGATATGAATAAAGATTTTGATTCTTCTTA</genome_strand>
        <mrna_strand>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTCAAGAAAAGAAAGAAAGCATCTGGTCCAAAACGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395006" ref_strand="-" ref_description="SGN-E395006 [TUS-34-O4]">
      <seq>aagaaattcaatggaaactgctttaattgtggtaaacatggtcataggggtaatgaatgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttttgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttctttttaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="+" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="67513" stop="68669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67813" g_stop="68369" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="561" polyA_stop="581"/>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="+" ref_id="SGN-E395006" ref_strand="-">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395006" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67813" e_stop="68369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATTCAATGGAAACTGCTTCAACTGTGGTAAACATGGTCATAGAGCTACTGAATGCCGGGGTCCAAAGTAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTTAAAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTAATCATATACTTCAACACTTACAGATGAAAAATTGTTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGAGTCTAATATGTTCCTGAATTGATTAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGG-C--TTCAAACTCGATGTAATTGCAGTTGATATGAATAAAGATTTTGATTCTTCTTA</genome_strand>
        <mrna_strand>AAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGGTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250407" ref_strand="+" ref_description="SGN-E250407 [cLEG-6-H3]">
      <seq>gtcgagtctttttttttttttttttttaataagaagcaaaatctttattcatatgaactgcaattacattgagtttgaaaaggccatcactaaggtagtcttttcctacatacatatcatttttgcttactactactttatcagaaacaaatacacatttaaatccattcttggtcagaattggaattgaaactaaattatttctcaattctggaacatatgagaccatattcaaagtcactaccttgcctgatgtcatctttaataggactttgccagttccttacacctttgcaacagcggagttggccataaataatttctcatctgtaactgctagagtatatgatgaaaataattctttgttggcacaaacatggcatgaggcaccagaatctatccaccattctcttggatttccaaccaagttacattctgaaagcattgcacagagatcgtccatttctcctttggattcacccaagtttgcttgatccttctttatcttgtccttcttaagaccccggctttcattagccctatgaccatgtttaccacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="80194" stop="67537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68762" g_stop="68737" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68736" i_stop="68370" i_length="367">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68369" g_stop="67837" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="562" r_length="536" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E250407" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68762" e_stop="68737"/>
          <exon e_start="68369" e_stop="67837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNATTTTTTTATCTAACTCATTTTCAACTTCAGTTTTATATGGCTTAAATGCATCTATTGCTTCATCCTTGCCATTTAGCAAATATACATAACAATATCTAGTGCAATCGTCAATAAAAGTTATGAAATACTTTTTCCCACCGCGTGATGGTGTTGACTTCATGTCACAAATATCAGTGTGAATCAATTTTAAAGAATTTGAATTCCTTTCAACAGATTTATAAGAATGCTTAGCATACTTAGATTCAACACAAATTTGGCATTTTGATTAATTGAAATCAAATTTTGGCAAAATATTTAAGTTAATCAGTTTTCGCAAGGTTTTGTTATTAACGTGTCCCAAACATTCATGACATAAACATTTAGACTCAAGCAAGTAAGAAGAATCAAAATCTTTATTCATATCAACTGCAATTACATCGAGTTTG--AA-GCCATCACTAAGGTAGCCTTTTCCTACATACATATCATTTTTGCTTACTACTACTTTATCAGAAACAAATACACATTTAAATCCATTCTTGGTCAGAACTGGAATTGAAACTAAATTCTTAATCAATTCAGGAACATATTAGACTCTATTCAAAGTCACCACCTTGCCTGATGTCATCTTTAATAGGACTTTGCCAGTTCCTTCCACCTTTGCAACAGCGGAGTTTGCCATAAACAATTTTTCATCTGTAAGTGTTGAAGTATATGATTAAAATAATTCTTTGTTGGCACAAACATGGCATGAGGCACCAGAATCTATCCACCATTCTCTTGGATTTCCAACCAAGTTACATTTTAAAAGCATTGCACAGAGATCGTCCATTTCTCCTTTGGATTCAGCCAAGTTTGCTTGATCCTTCTTTTTCTTGTCCTACTTTGGACCCCGGCATTCAGTAGCTCTATGACCATGTTTACCACAGTT</genome_strand>
        <mrna_strand>GTCGAGTCTTTTTTTTTTTTTTTTTT...............................................................................................................................................................................................................................................................................................................................................................................TAATAAGAAGCAAAATCTTTATTCATATGAACTGCAATTACATTGAGTTTGAAAAGGCCATCACTAAGGTAGTCTTTTCCTACATACATATCATTTTTGCTTACTACTACTTTATCAGAAACAAATACACATTTAAATCCATTCTTGGTCAGAATTGGAATTGAAACTAAATTATTTCTCAATTCTGGAACATATGAGACCATATTCAAAGTCACTACCTTGCCTGATGTCATCTTTAATAGGACTTTGCCAGTTCCTTACACCTTTGCAACAGCGGAGTTGGCCATAAATAATTTCTCATCTGTAACTGCTAGAGTATATGATGAAAATAATTCTTTGTTGGCACAAACATGGCATGAGGCACCAGAATCTATCCACCATTCTCTTGGATTTCCAACCAAGTTACATTCTGAAAGCATTGCACAGAGATCGTCCATTTCTCCTTTGGATTCACCCAAGTTTGCTTGATCCTTCTTTATCTTGTCCTTCTTAAGACCCCGGCTTTCATTAGCCCTATGACCATGTTTACCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375520" ref_strand="+" ref_description="SGN-E375520 [TUS-34-B10](-)">
      <seq>atgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattttggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactttagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtttcatatgttccagaattgagaaataatttagtttcaattccaattttgaccaagaatggatttaaatgtgtatttgtttttgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttttttttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="+" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="67569" stop="68669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67869" g_stop="68359" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="504" polyA_stop="524"/>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="+" ref_id="SGN-E375520" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67869" e_stop="68359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCGGGGTCCAAAGTAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTTAAAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTAATCATATACTTCAACACTTACAGATGAAAAATTGTTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGAGTCTAATATGTTCCTGAATTGATTAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGG-C--TTCAAACTCGATGTAATTGCAGTTGATATGAATAAAGATTTTG</genome_strand>
        <mrna_strand>ATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTTTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTTTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTTTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTTTGACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477823" ref_strand="+" ref_description="SGN-E477823 [cSTD-1-J18]">
      <seq>gtagcattaaactgcggctgcagctatggtgatgcttatgagcagcatctcatccttctgtctcctcccactcaacccaaacccctctaccactgccgctgtcgtcggcaactcacccgccgttcttcataaagtcgactgttctaccgattatcaatttaggatcgtttctggccatcggataaggcaagtagctgtacggaatagcattcgaacggctgagttcacttcatcttctgattctgtaactgatttagagtcggcggcgagtgtggtgaggaaattctatgccggaataaataggcgggatttggactctgtcgaagaacttattgctgagaattgtgtgtatgaagaccttgtatttcctcaacctttcgttggccgtaaggcaattctagattttttcaagaagttcactgattcagttggttctgatctgcaatttgttattgacgatatatccaaggaggattcatcagctgttggagtcacatggcacttggaatggaggggaagaccttttccttttagcaaaggatgcagcttttatcgattggaagtggtgaatggccagaggaaaatactttatggcagagacagtgtggaacctgcagtcaagcctggggagacggcattggttgcaataagaggggtggcatggctgttgcaaaaatttccccattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="82104" stop="76245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81822" g_stop="81426" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81425" i_stop="78139" i_length="3287">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78138" g_stop="78024" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="506" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78023" i_stop="77924" i_length="100">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77923" g_stop="77842" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="588" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77841" i_stop="76606" i_length="1236">
            <donor d_prob="0.927" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76605" g_stop="76554" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="640" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E477823" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81822" e_stop="81426"/>
          <exon e_start="78138" e_stop="78024"/>
          <exon e_start="77923" e_stop="77842"/>
          <exon e_start="76605" e_stop="76554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCATCAAACTGCAATTGCAGCTATGGTGATGCTTATGAGCAGCACCTCATCCTTTTCTCTCCTCCCACTCAACTCAAACCCCTCTACATCTACCACTGCCGCTGTCGTCGGCAACTCACCCGCCGTTCTTCATAGTGTCAACTGTTGTACAGATTATCTATTTAGGATCGTTTCTGGCCATCGGATAAGACAAGTGGCTGTACGGAATAGCAATCGAACGGCTGAGGTTACTTCATCCTCTGATTCTGTAACTGATTTAGAGTCGGCGGCGAGTGTGGTGAGGAAATTCTATGCCGGAATAAATAGGCGGGATTTGGACTCTGTCGAAGAACTTATTGCTGAGGATTGTGTGTATGAAGACCTTGTATTTCCTCAACCTTTCGTTGGCCGTAAGGTTAGTTATCAACCTGGACTAGTTGTATTTTGAAGACTTTTTTCTGTTGCATTTTGTTTGACTATTTTCTCTCTGGTATATTTAGTTTAAGATGTGAGAAAAGTTCAAACTAAGCTAGGCTTTTCATTCAATAAAACTAAAGATGAGCTGAAACCCTTTGAAAAGAGGCCAAGATTAAACTGAAAATGGAAATTACATTTGGGGATAATAACCAAGTTCGTACTTTCTTCATCCCATTTTATGTGACACCCTTAGATATTTGTGTGTTTGAGATTCATTTCATTAAAGATAAAAGGAAAACTTAAAAGTTAAATTGTTGCTAATCATAGTAAGGTAATACTTCATTTTGAGACGAACTAAAAAGGAAATGCTCTTACATAAAATGGAAGAGAGGGAGTAATTAAATTTATAGGGATTTTGCCAAGAGAAACATCTCCATTTCAAAAGATATGATCCTACTTTCATCAAATTAAAAAGTCCGCTGGTTGATGTAAAGATTAACACCGCCCATGTTGCATAGCATGGAGCTGAATGAATTCACATTCAAATTTACGTGAGATCAAAATAACATCAAAGTGTTCGATGAATGTTTTGGGAACTTCAACTGCAAACAAATGTCCAAGAGCAATGGTTACTGCAAATTTATCAGACTCTCTACTACTCTTAGAAGTGTAAAAAGTATGGAGGAATGCAAAATCATCATCATTATATAGTGCAATATTTGGGCCCTCTCCAGTTACAGCTACAACATCAACTTGAATGATTCGCACACATACAACAACAGTGAAACAACCAACATTTTGCAAATGTCAGAATAACCAATAATAACCTCCTGATGCCCATCATAGTTCTTTATTATGTGCTCCCTACCTAGTGGCAGAATCAGGATTTTCATTAAGGGGTTCGATGGTTGTAGTAAAACGCAATATTTATTCCCTCTCCAGTTACAGCTACAACATCAACTTGAATGATTTGCACTCCTGCAACAACAATGAAACAACCAATATTTGCGAATGTTAGAATAACCAATTATAACCTCCTGATGCCCATCATAGTTTTTTATTATGCGTTCCCTATACCAATTAATTGGTAGTAATCTTCTGACTACCCAACCAGCCAGTGGTGGAACCAGGATGTTTAGTAGGGCTTGAACACGTAACCTCATGGAATTTTCTTATGCCCTTAACCAATAAACTAAATCTTCAACTTGTTTCAAGAGGTGTCAATACTTGTATATATATTTACTAAACCAAAATATGACTTCTATATACAATGTAACTTTCTGACGAAGGGGTTTCGCTTCACACCTCTTGGCCAAGGGTGGGTGCGCCCCTGGATCCAGCTTGTCTCATGTCCTACATGGGCTCAAATAGAGGAACTAGATGCTGTGTTCAACCAGGAAAGGGCCTGCTTATCTCCCCATTAATAATAAGATGTGCATCCTTTTGTAAAATCTCTACATCTAGTTCATCCAAGGCATTTGGAACGGTGGAAATAACATAAGCTCCAACTGAATCATTTCCTAATTCAGTATCTGTTTTTTTTTTTTTAATGAAAATCTGCTTTGAAGGTATTCTAGACTTCTTTGTTGTCAGGCAGAACCACTGTAGTAGGAAGAACCCAAGGTCTTTGCCTTTTTATATCTTTAGTTAGAAACTCCAGTGTTTGCTCTTCATCCCAATTACCATATTTAGGTATTTTGTGATTATATCAATTGCCTATGACCAGGACACCTAGACATGTGAATATAAACAAGTGATTCATCACTAAAATATAGCTGAAGTTTGAGAAACATGAAAATTGACTCTCAGAAACTCAAACCCGATCAAGTATCTCCCAACTGAATCTGAAAGCTTCCTAATTGCCTCAAGTATTGAACAAAACCCACACCAGCCTTCTCTGAAGTTTACCATATGTGCTCATAACAGAAACTATTAGGAAGAGATGCTTCAAGTTTCTTGCGGTTCATACTTTTCTATAAAGAATTTCAAAGTATTGTTCAATAACAACAATCATCCTTGAGTCAACATGATAGAAATCACAACTTCTTTGTCTTAGCTGCTCATGTGACATAGCATAGGGCCAAGGACCAAGATCTCATCTTGCCACCTCAATAACTCAGGGCTTCAGTGTTTCTCCACCTTTAGTAGAGCTATTTCACAATTTTTTCGCCACAGTGCACTTGCCCATTAAAATCTTGACGAGGATACTCAATATGAAAAAGGCAAACTGTCAGCTAGCTTCCACAACTCCATCATTCCTACATCAATGAGTATTATAGCAGGAAGAAAATTATGGCCCAAACTATGAACACAAACAACTTTTACAAACTGCATTTGGAGATTTGGAATCACATCTTTGTAAAAAGTCATTTTGTTTCAATGTCCATCTCAGTATTGGAATTATCACTATTAATAGTAATTCTATTCTCCTCTTTGTTGTTGTTCAAGCCTTTTCCATAATAGAGAAATCACCTGAAAGCCCAGTTTTCTTCTTAGCCTTGTTACTGCTTCCATCCTCTTATTTTTTCACCTTCTTGCACCTCTTTAAAGTTCCATTTACTATAAATTGAAGAACCAGTTCTCCATCATCAACAACCTTATTGGCGTCAGACAAACTATTCTCGATGCTCGATAATTCTAATTCCTTGGGTTTGATGCACTTGAGCTTATGGTCTTCCAAAAACAATCCCTCTACTTCCATGAGGTAGTGGTAAGGTCTGCTACACTCTACCCTCCTGAGACCCTACTTAGTGCGATTTCTCTGGATATGTTGTTGTATCTGTTTGCTTTTCGTGAGTGAAGAATTTGGCCGTAGAGTTCATTATCTTTGTATAGATTTCTCTGTTTTGAGTTGTGATCCACCTCATCTGAAAGTTCTAAAATTTTGTATGAGGTGACACCCTATGTTGCTCGGACTTTTCAACAGTATCATCGGTGCGTGTCCGATTCTTCAAAAGTGGTGCATTTTTGCAGAATTTGACACCGGTGAGGCATCTAAAGTGAGGGGTCCGCACAACTTACAACTCTTTGGGCATGGGATTAGAACGAAATCCATCTCTAATGAACGGACACCCAATGTCGGTTTACTCTGTTTTGTTACTCCATGCTTCACATGTCTAGTACTCAGCATGGTGGCGAAGTGTTAGTCCCATATAAGATAAGTGTATTTGTGATTATATTCGCTTAAAGAAAATCACTACTTGAGCTAATTTTTGGAATTATATCAGGCCTATGTCCTTTTTGCTCATCACTAAGCTTATGTTTGATCTCAAACTATTAATGCAGGCAATTCTAGATTTTTTCAAGAAGTTCACTGATTCAGTTGGTTCTGATCTGCAATTTGTTATTGACGATATATCCAAGGAGGATTCATCAGCTGTTGGAGTCACATGGCACTTGGGTATGGAAAAACTTGTAATACTTTATCTTGTTTTCCATACTGTTTACTAGGAAGATTGATCTTCATTGTCCAGGGTAATTGATTTTGAATATGATAACAGAATGGAGGGGAAGACCTTTTCCTTTTAGCAAAGGATGCAGCTTTTATCGATTGGAAGTGGTGAATGGCCAGATGAAAATACTGTTCGTAAAACAATATCCCAACCCACTAAATACTGGATGTGTTTTTATATTTTATTATCTGCTGAACACTTCAATTTTATCTAATTGGTCGAACAAATTACTTCATTGAAGAAGATCGAGAAGCACAATTATATGTTCATTGTAGTTAGCATAGAGGATTGTTCAATATTCCATATTTTTAAACTATAATCAATAAAGGGTGTGGCCTAGTAGTCAATGACGTGGATTGAGAACCATGAGATCATAGGTATAAATTCCAGCAGAGGCAAAAAACACTGGCTGATCTATTGTGTCCATGGCTGGTGGGATGTGACTGATATCCCGTGGAGTTAGTTGAGGTGTCCGAATGTTGGCGCGGACATTAAATTTGTCAAAGGAAAATAAAAAATCGACCAGCAACTCCTAAACCCAAATTAATTGGATTCGTCTATATGAATCTTTCGTATCTCTTTTTCTCTATTCAGTGTGTGCTGAAGTGAACATATTTGAATAAACTCAATATTTTGAGAATTCATTAGTCAGTTTATTACATTGACATCAATCTACCATAACCTTTTACTTTTATTGCGCTTGAAACTGACCATACTTTGCTAAGTTAACATAGATGTAGGTGTGGAGCATTAACTTAATTTATAAATACAGAATTTAACTTGCTTGCTAGTTATGAGCATCATCTTTTAGCTTGATTTTACATTGTTCCATAAGGATCTTCATGTAGTTATAACTTATAATCCTTGTGTTAGCCAACTATTAGAAGCACAAGATTGTTGGTTCCCATTCTCTATTTGATCAGGTTTACACTTATATTAATATATATGAGATAGATTTGATGACCTAGATCCTGCTCCTGATCTGTACACTATTAAGGCTGTGACTTTTGTTAATACATGATGACAAGGCTCTTCAGAACTCCGGACTAAAAAAAGTCAGTAACTAGTACAGAGAGAATTTGTAAAGATAATTAACTCTTTATAGATGAAGGGTAAATTATTAATTTCTCTATCCTTTCAGTGTTTATTGTATTTGGCTGTAGAAAATGACTTGTAGATTTTGTATGTTCTCTTGTAAGGTCCTGGGTTTTTCTTCTTGGTTTTGAAATTTCTCAGCAGCTCTCTTTGGGAGAAGGGTCTTGATAATCACTTGCAACCAAAAAAGACTACCATTCTGTCTTAGGCTTACATTTTAAGAGCAAAAAAAAGTTTTGAGTGTAGACTAAATGTTAATTTTCTTAAGCAGTTATGGCAGAGACAGTGTGGAACCTGCAGTCAAGCCGGGGGAGACGGCATTG</genome_strand>
        <mrna_strand>GTAGCATTAAACTGCGGCTGCAGCTATGGTGATGCTTATGAGCAGCATCTCATCCTTCTGTCTCCTCCCACTCAACCCAAACCCCTCTAC--C-AC---TGCCGCTGTCGTCGGCAACTCACCCGCCGTTCTTCATAAAGTCGACTGTTCTACCGATTATCAATTTAGGATCGTTTCTGGCCATCGGATAAGGCAAGTAGCTGTACGGAATAGCATTCGAACGGCTGAGTTCACTTCATCTTCTGATTCTGTAACTGATTTAGAGTCGGCGGCGAGTGTGGTGAGGAAATTCTATGCCGGAATAAATAGGCGGGATTTGGACTCTGTCGAAGAACTTATTGCTGAGAATTGTGTGTATGAAGACCTTGTATTTCCTCAACCTTTCGTTGGCCGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTCTAGATTTTTTCAAGAAGTTCACTGATTCAGTTGGTTCTGATCTGCAATTTGTTATTGACGATATATCCAAGGAGGATTCATCAGCTGTTGGAGTCACATGGCACTTGG....................................................................................................AATGGAGGGGAAGACCTTTTCCTTTTAGCAAAGGATGCAGCTTTTATCGATTGGAAGTGGTGAATGGCCAGAGGAAAATACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGCAGAGACAGTGTGGAACCTGCAGTCAAGCCTGGGGAGACGGCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458082" ref_strand="+" ref_description="SGN-E458082 [cPRO-4-L1]">
      <seq>cttatgagcagcatctcatccttctgtctcctcccactcaacccaaacccctctaccactgccgctgtcgtcggcaactcacccgccgttcttcataaagtcgactgttctaccgattatcaatttaggatcgtttctggccatcggataaggcaagtagctgtacggaatagcattcgaacggctgagttcacttcatcttctgattctgtaactgatttagagtcggcggcgagtgtggtgaggaaattctatgccggaataaataggcgggatttggactctgtcgaagaacttattgctgagaattgtgtgtatgaagaccttgtatttcctcaacctttcgttggccgtaaggcaattctagattttttcaagaagttcactgattcagttggttctgatctgcaatttgttattgacgatatatccaaggaggattcatcagctgttggagtcacatggcacttggaatggaggggaagaccttttccttttagcaaggatgcagcttttatcgattggaagtggtgaatgggccagagaaatactttatggcagagacagtgtggaacctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="82088" stop="76278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81788" g_stop="81426" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81425" i_stop="78139" i_length="3287">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78138" g_stop="78024" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="472" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78023" i_stop="77924" i_length="100">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77923" g_stop="77842" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="552" r_length="80" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77841" i_stop="76606" i_length="1236">
            <donor d_prob="0.927" d_score="0.92"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76605" g_stop="76578" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="580" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E458082" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81788" e_stop="81426"/>
          <exon e_start="78138" e_stop="78024"/>
          <exon e_start="77923" e_stop="77842"/>
          <exon e_start="76605" e_stop="76578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATGAGCAGCACCTCATCCTTTTCTCTCCTCCCACTCAACTCAAACCCCTCTACATCTACCACTGCCGCTGTCGTCGGCAACTCACCCGCCGTTCTTCATAGTGTCAACTGTTGTACAGATTATCTATTTAGGATCGTTTCTGGCCATCGGATAAGACAAGTGGCTGTACGGAATAGCAATCGAACGGCTGAGGTTACTTCATCCTCTGATTCTGTAACTGATTTAGAGTCGGCGGCGAGTGTGGTGAGGAAATTCTATGCCGGAATAAATAGGCGGGATTTGGACTCTGTCGAAGAACTTATTGCTGAGGATTGTGTGTATGAAGACCTTGTATTTCCTCAACCTTTCGTTGGCCGTAAGGTTAGTTATCAACCTGGACTAGTTGTATTTTGAAGACTTTTTTCTGTTGCATTTTGTTTGACTATTTTCTCTCTGGTATATTTAGTTTAAGATGTGAGAAAAGTTCAAACTAAGCTAGGCTTTTCATTCAATAAAACTAAAGATGAGCTGAAACCCTTTGAAAAGAGGCCAAGATTAAACTGAAAATGGAAATTACATTTGGGGATAATAACCAAGTTCGTACTTTCTTCATCCCATTTTATGTGACACCCTTAGATATTTGTGTGTTTGAGATTCATTTCATTAAAGATAAAAGGAAAACTTAAAAGTTAAATTGTTGCTAATCATAGTAAGGTAATACTTCATTTTGAGACGAACTAAAAAGGAAATGCTCTTACATAAAATGGAAGAGAGGGAGTAATTAAATTTATAGGGATTTTGCCAAGAGAAACATCTCCATTTCAAAAGATATGATCCTACTTTCATCAAATTAAAAAGTCCGCTGGTTGATGTAAAGATTAACACCGCCCATGTTGCATAGCATGGAGCTGAATGAATTCACATTCAAATTTACGTGAGATCAAAATAACATCAAAGTGTTCGATGAATGTTTTGGGAACTTCAACTGCAAACAAATGTCCAAGAGCAATGGTTACTGCAAATTTATCAGACTCTCTACTACTCTTAGAAGTGTAAAAAGTATGGAGGAATGCAAAATCATCATCATTATATAGTGCAATATTTGGGCCCTCTCCAGTTACAGCTACAACATCAACTTGAATGATTCGCACACATACAACAACAGTGAAACAACCAACATTTTGCAAATGTCAGAATAACCAATAATAACCTCCTGATGCCCATCATAGTTCTTTATTATGTGCTCCCTACCTAGTGGCAGAATCAGGATTTTCATTAAGGGGTTCGATGGTTGTAGTAAAACGCAATATTTATTCCCTCTCCAGTTACAGCTACAACATCAACTTGAATGATTTGCACTCCTGCAACAACAATGAAACAACCAATATTTGCGAATGTTAGAATAACCAATTATAACCTCCTGATGCCCATCATAGTTTTTTATTATGCGTTCCCTATACCAATTAATTGGTAGTAATCTTCTGACTACCCAACCAGCCAGTGGTGGAACCAGGATGTTTAGTAGGGCTTGAACACGTAACCTCATGGAATTTTCTTATGCCCTTAACCAATAAACTAAATCTTCAACTTGTTTCAAGAGGTGTCAATACTTGTATATATATTTACTAAACCAAAATATGACTTCTATATACAATGTAACTTTCTGACGAAGGGGTTTCGCTTCACACCTCTTGGCCAAGGGTGGGTGCGCCCCTGGATCCAGCTTGTCTCATGTCCTACATGGGCTCAAATAGAGGAACTAGATGCTGTGTTCAACCAGGAAAGGGCCTGCTTATCTCCCCATTAATAATAAGATGTGCATCCTTTTGTAAAATCTCTACATCTAGTTCATCCAAGGCATTTGGAACGGTGGAAATAACATAAGCTCCAACTGAATCATTTCCTAATTCAGTATCTGTTTTTTTTTTTTTAATGAAAATCTGCTTTGAAGGTATTCTAGACTTCTTTGTTGTCAGGCAGAACCACTGTAGTAGGAAGAACCCAAGGTCTTTGCCTTTTTATATCTTTAGTTAGAAACTCCAGTGTTTGCTCTTCATCCCAATTACCATATTTAGGTATTTTGTGATTATATCAATTGCCTATGACCAGGACACCTAGACATGTGAATATAAACAAGTGATTCATCACTAAAATATAGCTGAAGTTTGAGAAACATGAAAATTGACTCTCAGAAACTCAAACCCGATCAAGTATCTCCCAACTGAATCTGAAAGCTTCCTAATTGCCTCAAGTATTGAACAAAACCCACACCAGCCTTCTCTGAAGTTTACCATATGTGCTCATAACAGAAACTATTAGGAAGAGATGCTTCAAGTTTCTTGCGGTTCATACTTTTCTATAAAGAATTTCAAAGTATTGTTCAATAACAACAATCATCCTTGAGTCAACATGATAGAAATCACAACTTCTTTGTCTTAGCTGCTCATGTGACATAGCATAGGGCCAAGGACCAAGATCTCATCTTGCCACCTCAATAACTCAGGGCTTCAGTGTTTCTCCACCTTTAGTAGAGCTATTTCACAATTTTTTCGCCACAGTGCACTTGCCCATTAAAATCTTGACGAGGATACTCAATATGAAAAAGGCAAACTGTCAGCTAGCTTCCACAACTCCATCATTCCTACATCAATGAGTATTATAGCAGGAAGAAAATTATGGCCCAAACTATGAACACAAACAACTTTTACAAACTGCATTTGGAGATTTGGAATCACATCTTTGTAAAAAGTCATTTTGTTTCAATGTCCATCTCAGTATTGGAATTATCACTATTAATAGTAATTCTATTCTCCTCTTTGTTGTTGTTCAAGCCTTTTCCATAATAGAGAAATCACCTGAAAGCCCAGTTTTCTTCTTAGCCTTGTTACTGCTTCCATCCTCTTATTTTTTCACCTTCTTGCACCTCTTTAAAGTTCCATTTACTATAAATTGAAGAACCAGTTCTCCATCATCAACAACCTTATTGGCGTCAGACAAACTATTCTCGATGCTCGATAATTCTAATTCCTTGGGTTTGATGCACTTGAGCTTATGGTCTTCCAAAAACAATCCCTCTACTTCCATGAGGTAGTGGTAAGGTCTGCTACACTCTACCCTCCTGAGACCCTACTTAGTGCGATTTCTCTGGATATGTTGTTGTATCTGTTTGCTTTTCGTGAGTGAAGAATTTGGCCGTAGAGTTCATTATCTTTGTATAGATTTCTCTGTTTTGAGTTGTGATCCACCTCATCTGAAAGTTCTAAAATTTTGTATGAGGTGACACCCTATGTTGCTCGGACTTTTCAACAGTATCATCGGTGCGTGTCCGATTCTTCAAAAGTGGTGCATTTTTGCAGAATTTGACACCGGTGAGGCATCTAAAGTGAGGGGTCCGCACAACTTACAACTCTTTGGGCATGGGATTAGAACGAAATCCATCTCTAATGAACGGACACCCAATGTCGGTTTACTCTGTTTTGTTACTCCATGCTTCACATGTCTAGTACTCAGCATGGTGGCGAAGTGTTAGTCCCATATAAGATAAGTGTATTTGTGATTATATTCGCTTAAAGAAAATCACTACTTGAGCTAATTTTTGGAATTATATCAGGCCTATGTCCTTTTTGCTCATCACTAAGCTTATGTTTGATCTCAAACTATTAATGCAGGCAATTCTAGATTTTTTCAAGAAGTTCACTGATTCAGTTGGTTCTGATCTGCAATTTGTTATTGACGATATATCCAAGGAGGATTCATCAGCTGTTGGAGTCACATGGCACTTGGGTATGGAAAAACTTGTAATACTTTATCTTGTTTTCCATACTGTTTACTAGGAAGATTGATCTTCATTGTCCAGGGTAATTGATTTTGAATATGATAACAGAATGGAGGGGAAGACCTTTTCCTTTTAGCAAAGGATGCAGCTTTTATCGATTGGAAGTGGTGAAT-GGCCAGATGAAAATACTGTTCGTAAAACAATATCCCAACCCACTAAATACTGGATGTGTTTTTATATTTTATTATCTGCTGAACACTTCAATTTTATCTAATTGGTCGAACAAATTACTTCATTGAAGAAGATCGAGAAGCACAATTATATGTTCATTGTAGTTAGCATAGAGGATTGTTCAATATTCCATATTTTTAAACTATAATCAATAAAGGGTGTGGCCTAGTAGTCAATGACGTGGATTGAGAACCATGAGATCATAGGTATAAATTCCAGCAGAGGCAAAAAACACTGGCTGATCTATTGTGTCCATGGCTGGTGGGATGTGACTGATATCCCGTGGAGTTAGTTGAGGTGTCCGAATGTTGGCGCGGACATTAAATTTGTCAAAGGAAAATAAAAAATCGACCAGCAACTCCTAAACCCAAATTAATTGGATTCGTCTATATGAATCTTTCGTATCTCTTTTTCTCTATTCAGTGTGTGCTGAAGTGAACATATTTGAATAAACTCAATATTTTGAGAATTCATTAGTCAGTTTATTACATTGACATCAATCTACCATAACCTTTTACTTTTATTGCGCTTGAAACTGACCATACTTTGCTAAGTTAACATAGATGTAGGTGTGGAGCATTAACTTAATTTATAAATACAGAATTTAACTTGCTTGCTAGTTATGAGCATCATCTTTTAGCTTGATTTTACATTGTTCCATAAGGATCTTCATGTAGTTATAACTTATAATCCTTGTGTTAGCCAACTATTAGAAGCACAAGATTGTTGGTTCCCATTCTCTATTTGATCAGGTTTACACTTATATTAATATATATGAGATAGATTTGATGACCTAGATCCTGCTCCTGATCTGTACACTATTAAGGCTGTGACTTTTGTTAATACATGATGACAAGGCTCTTCAGAACTCCGGACTAAAAAAAGTCAGTAACTAGTACAGAGAGAATTTGTAAAGATAATTAACTCTTTATAGATGAAGGGTAAATTATTAATTTCTCTATCCTTTCAGTGTTTATTGTATTTGGCTGTAGAAAATGACTTGTAGATTTTGTATGTTCTCTTGTAAGGTCCTGGGTTTTTCTTCTTGGTTTTGAAATTTCTCAGCAGCTCTCTTTGGGAGAAGGGTCTTGATAATCACTTGCAACCAAAAAAGACTACCATTCTGTCTTAGGCTTACATTTTAAGAGCAAAAAAAAGTTTTGAGTGTAGACTAAATGTTAATTTTCTTAAGCAGTTATGGCAGAGACAGTGTGGAACCTGCA</genome_strand>
        <mrna_strand>CTTATGAGCAGCATCTCATCCTTCTGTCTCCTCCCACTCAACCCAAA--CC-C--C-TCTACCACTGCCGCTGTCGTCGGCAACTCACCCGCCGTTCTTCATAAAGTCGACTGTTCTACCGATTATCAATTTAGGATCGTTTCTGGCCATCGGATAAGGCAAGTAGCTGTACGGAATAGCATTCGAACGGCTGAGTTCACTTCATCTTCTGATTCTGTAACTGATTTAGAGTCGGCGGCGAGTGTGGTGAGGAAATTCTATGCCGGAATAAATAGGCGGGATTTGGACTCTGTCGAAGAACTTATTGCTGAGAATTGTGTGTATGAAGACCTTGTATTTCCTCAACCTTTCGTTGGCCGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTCTAGATTTTTTCAAGAAGTTCACTGATTCAGTTGGTTCTGATCTGCAATTTGTTATTGACGATATATCCAAGGAGGATTCATCAGCTGTTGGAGTCACATGGCACTTGG....................................................................................................AATGGAGGGGAAGACCTTTTCCTTTTAGC-AAGGATGCAGCTTTTATCGATTGGAAGTGGTGAATGGGCCAGA-G-AAATACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGCAGAGACAGTGTGGAACCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250902" ref_strand="+" ref_description="SGN-E250902 [cLEG-13-C2]">
      <seq>ctcacccaccgttcttcatagcgtcaactgtagtacagattatctatctcggatcgcttctggccatcggataatacaagtggctgtacggaatagcaatcgaacggctgaagatacttcatcctctgattctgtcactgatttaaagtctgcggctagtgtggtgaggaaattctatgccggaataaataggcgggatttggactctgtcgaagaacttattgctgaggattgtgtgtatgaagaccttgtatttcctcaacctttcgttggccgtaaggcaattctagattttttcaataagttcactgattcagttggttctgatctgcaattagttattgacgatatatccgacgaggattcatcagctgttggagtcacatggcacttggaatggaggggaagaccttttccttttagcaaaagatgcagcttttatcgattggaagtggtgaatggccagatgaaaatactttatggcagagacagtgtggaacctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="82005" stop="76279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81705" g_stop="81426" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81425" i_stop="78139" i_length="3287">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78138" g_stop="78024" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="395" r_length="115" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78023" i_stop="77924" i_length="100">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77923" g_stop="77842" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="477" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77841" i_stop="76606" i_length="1236">
            <donor d_prob="0.927" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76605" g_stop="76579" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="504" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E250902" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81705" e_stop="81426"/>
          <exon e_start="78138" e_stop="78024"/>
          <exon e_start="77923" e_stop="77842"/>
          <exon e_start="76605" e_stop="76579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACCCGCCGTTCTTCATAGTGTCAACTGTTGTACAGATTATCTATTTAGGATCGTTTCTGGCCATCGGATAAGACAAGTGGCTGTACGGAATAGCAATCGAACGGCTGAGGTTACTTCATCCTCTGATTCTGTAACTGATTTAGAGTCGGCGGCGAGTGTGGTGAGGAAATTCTATGCCGGAATAAATAGGCGGGATTTGGACTCTGTCGAAGAACTTATTGCTGAGGATTGTGTGTATGAAGACCTTGTATTTCCTCAACCTTTCGTTGGCCGTAAGGTTAGTTATCAACCTGGACTAGTTGTATTTTGAAGACTTTTTTCTGTTGCATTTTGTTTGACTATTTTCTCTCTGGTATATTTAGTTTAAGATGTGAGAAAAGTTCAAACTAAGCTAGGCTTTTCATTCAATAAAACTAAAGATGAGCTGAAACCCTTTGAAAAGAGGCCAAGATTAAACTGAAAATGGAAATTACATTTGGGGATAATAACCAAGTTCGTACTTTCTTCATCCCATTTTATGTGACACCCTTAGATATTTGTGTGTTTGAGATTCATTTCATTAAAGATAAAAGGAAAACTTAAAAGTTAAATTGTTGCTAATCATAGTAAGGTAATACTTCATTTTGAGACGAACTAAAAAGGAAATGCTCTTACATAAAATGGAAGAGAGGGAGTAATTAAATTTATAGGGATTTTGCCAAGAGAAACATCTCCATTTCAAAAGATATGATCCTACTTTCATCAAATTAAAAAGTCCGCTGGTTGATGTAAAGATTAACACCGCCCATGTTGCATAGCATGGAGCTGAATGAATTCACATTCAAATTTACGTGAGATCAAAATAACATCAAAGTGTTCGATGAATGTTTTGGGAACTTCAACTGCAAACAAATGTCCAAGAGCAATGGTTACTGCAAATTTATCAGACTCTCTACTACTCTTAGAAGTGTAAAAAGTATGGAGGAATGCAAAATCATCATCATTATATAGTGCAATATTTGGGCCCTCTCCAGTTACAGCTACAACATCAACTTGAATGATTCGCACACATACAACAACAGTGAAACAACCAACATTTTGCAAATGTCAGAATAACCAATAATAACCTCCTGATGCCCATCATAGTTCTTTATTATGTGCTCCCTACCTAGTGGCAGAATCAGGATTTTCATTAAGGGGTTCGATGGTTGTAGTAAAACGCAATATTTATTCCCTCTCCAGTTACAGCTACAACATCAACTTGAATGATTTGCACTCCTGCAACAACAATGAAACAACCAATATTTGCGAATGTTAGAATAACCAATTATAACCTCCTGATGCCCATCATAGTTTTTTATTATGCGTTCCCTATACCAATTAATTGGTAGTAATCTTCTGACTACCCAACCAGCCAGTGGTGGAACCAGGATGTTTAGTAGGGCTTGAACACGTAACCTCATGGAATTTTCTTATGCCCTTAACCAATAAACTAAATCTTCAACTTGTTTCAAGAGGTGTCAATACTTGTATATATATTTACTAAACCAAAATATGACTTCTATATACAATGTAACTTTCTGACGAAGGGGTTTCGCTTCACACCTCTTGGCCAAGGGTGGGTGCGCCCCTGGATCCAGCTTGTCTCATGTCCTACATGGGCTCAAATAGAGGAACTAGATGCTGTGTTCAACCAGGAAAGGGCCTGCTTATCTCCCCATTAATAATAAGATGTGCATCCTTTTGTAAAATCTCTACATCTAGTTCATCCAAGGCATTTGGAACGGTGGAAATAACATAAGCTCCAACTGAATCATTTCCTAATTCAGTATCTGTTTTTTTTTTTTTAATGAAAATCTGCTTTGAAGGTATTCTAGACTTCTTTGTTGTCAGGCAGAACCACTGTAGTAGGAAGAACCCAAGGTCTTTGCCTTTTTATATCTTTAGTTAGAAACTCCAGTGTTTGCTCTTCATCCCAATTACCATATTTAGGTATTTTGTGATTATATCAATTGCCTATGACCAGGACACCTAGACATGTGAATATAAACAAGTGATTCATCACTAAAATATAGCTGAAGTTTGAGAAACATGAAAATTGACTCTCAGAAACTCAAACCCGATCAAGTATCTCCCAACTGAATCTGAAAGCTTCCTAATTGCCTCAAGTATTGAACAAAACCCACACCAGCCTTCTCTGAAGTTTACCATATGTGCTCATAACAGAAACTATTAGGAAGAGATGCTTCAAGTTTCTTGCGGTTCATACTTTTCTATAAAGAATTTCAAAGTATTGTTCAATAACAACAATCATCCTTGAGTCAACATGATAGAAATCACAACTTCTTTGTCTTAGCTGCTCATGTGACATAGCATAGGGCCAAGGACCAAGATCTCATCTTGCCACCTCAATAACTCAGGGCTTCAGTGTTTCTCCACCTTTAGTAGAGCTATTTCACAATTTTTTCGCCACAGTGCACTTGCCCATTAAAATCTTGACGAGGATACTCAATATGAAAAAGGCAAACTGTCAGCTAGCTTCCACAACTCCATCATTCCTACATCAATGAGTATTATAGCAGGAAGAAAATTATGGCCCAAACTATGAACACAAACAACTTTTACAAACTGCATTTGGAGATTTGGAATCACATCTTTGTAAAAAGTCATTTTGTTTCAATGTCCATCTCAGTATTGGAATTATCACTATTAATAGTAATTCTATTCTCCTCTTTGTTGTTGTTCAAGCCTTTTCCATAATAGAGAAATCACCTGAAAGCCCAGTTTTCTTCTTAGCCTTGTTACTGCTTCCATCCTCTTATTTTTTCACCTTCTTGCACCTCTTTAAAGTTCCATTTACTATAAATTGAAGAACCAGTTCTCCATCATCAACAACCTTATTGGCGTCAGACAAACTATTCTCGATGCTCGATAATTCTAATTCCTTGGGTTTGATGCACTTGAGCTTATGGTCTTCCAAAAACAATCCCTCTACTTCCATGAGGTAGTGGTAAGGTCTGCTACACTCTACCCTCCTGAGACCCTACTTAGTGCGATTTCTCTGGATATGTTGTTGTATCTGTTTGCTTTTCGTGAGTGAAGAATTTGGCCGTAGAGTTCATTATCTTTGTATAGATTTCTCTGTTTTGAGTTGTGATCCACCTCATCTGAAAGTTCTAAAATTTTGTATGAGGTGACACCCTATGTTGCTCGGACTTTTCAACAGTATCATCGGTGCGTGTCCGATTCTTCAAAAGTGGTGCATTTTTGCAGAATTTGACACCGGTGAGGCATCTAAAGTGAGGGGTCCGCACAACTTACAACTCTTTGGGCATGGGATTAGAACGAAATCCATCTCTAATGAACGGACACCCAATGTCGGTTTACTCTGTTTTGTTACTCCATGCTTCACATGTCTAGTACTCAGCATGGTGGCGAAGTGTTAGTCCCATATAAGATAAGTGTATTTGTGATTATATTCGCTTAAAGAAAATCACTACTTGAGCTAATTTTTGGAATTATATCAGGCCTATGTCCTTTTTGCTCATCACTAAGCTTATGTTTGATCTCAAACTATTAATGCAGGCAATTCTAGATTTTTTCAAGAAGTTCACTGATTCAGTTGGTTCTGATCTGCAATTTGTTATTGACGATATATCCAAGGAGGATTCATCAGCTGTTGGAGTCACATGGCACTTGGGTATGGAAAAACTTGTAATACTTTATCTTGTTTTCCATACTGTTTACTAGGAAGATTGATCTTCATTGTCCAGGGTAATTGATTTTGAATATGATAACAGAATGGAGGGGAAGACCTTTTCCTTTTAGCAAAGGATGCAGCTTTTATCGATTGGAAGTGGTGAATGGCCAGATGAAAATACTGTTCGTAAAACAATATCCCAACCCACTAAATACTGGATGTGTTTTTATATTTTATTATCTGCTGAACACTTCAATTTTATCTAATTGGTCGAACAAATTACTTCATTGAAGAAGATCGAGAAGCACAATTATATGTTCATTGTAGTTAGCATAGAGGATTGTTCAATATTCCATATTTTTAAACTATAATCAATAAAGGGTGTGGCCTAGTAGTCAATGACGTGGATTGAGAACCATGAGATCATAGGTATAAATTCCAGCAGAGGCAAAAAACACTGGCTGATCTATTGTGTCCATGGCTGGTGGGATGTGACTGATATCCCGTGGAGTTAGTTGAGGTGTCCGAATGTTGGCGCGGACATTAAATTTGTCAAAGGAAAATAAAAAATCGACCAGCAACTCCTAAACCCAAATTAATTGGATTCGTCTATATGAATCTTTCGTATCTCTTTTTCTCTATTCAGTGTGTGCTGAAGTGAACATATTTGAATAAACTCAATATTTTGAGAATTCATTAGTCAGTTTATTACATTGACATCAATCTACCATAACCTTTTACTTTTATTGCGCTTGAAACTGACCATACTTTGCTAAGTTAACATAGATGTAGGTGTGGAGCATTAACTTAATTTATAAATACAGAATTTAACTTGCTTGCTAGTTATGAGCATCATCTTTTAGCTTGATTTTACATTGTTCCATAAGGATCTTCATGTAGTTATAACTTATAATCCTTGTGTTAGCCAACTATTAGAAGCACAAGATTGTTGGTTCCCATTCTCTATTTGATCAGGTTTACACTTATATTAATATATATGAGATAGATTTGATGACCTAGATCCTGCTCCTGATCTGTACACTATTAAGGCTGTGACTTTTGTTAATACATGATGACAAGGCTCTTCAGAACTCCGGACTAAAAAAAGTCAGTAACTAGTACAGAGAGAATTTGTAAAGATAATTAACTCTTTATAGATGAAGGGTAAATTATTAATTTCTCTATCCTTTCAGTGTTTATTGTATTTGGCTGTAGAAAATGACTTGTAGATTTTGTATGTTCTCTTGTAAGGTCCTGGGTTTTTCTTCTTGGTTTTGAAATTTCTCAGCAGCTCTCTTTGGGAGAAGGGTCTTGATAATCACTTGCAACCAAAAAAGACTACCATTCTGTCTTAGGCTTACATTTTAAGAGCAAAAAAAAGTTTTGAGTGTAGACTAAATGTTAATTTTCTTAAGCAGTTATGGCAGAGACAGTGTGGAACCTGC</genome_strand>
        <mrna_strand>CTCACCCACCGTTCTTCATAGCGTCAACTGTAGTACAGATTATCTATCTCGGATCGCTTCTGGCCATCGGATAATACAAGTGGCTGTACGGAATAGCAATCGAACGGCTGAAGATACTTCATCCTCTGATTCTGTCACTGATTTAAAGTCTGCGGCTAGTGTGGTGAGGAAATTCTATGCCGGAATAAATAGGCGGGATTTGGACTCTGTCGAAGAACTTATTGCTGAGGATTGTGTGTATGAAGACCTTGTATTTCCTCAACCTTTCGTTGGCCGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTCTAGATTTTTTCAATAAGTTCACTGATTCAGTTGGTTCTGATCTGCAATTAGTTATTGACGATATATCCGACGAGGATTCATCAGCTGTTGGAGTCACATGGCACTTGG....................................................................................................AATGGAGGGGAAGACCTTTTCCTTTTAGCAAAAGATGCAGCTTTTATCGATTGGAAGTGGTGAATGGCCAGATGAAAATACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGCAGAGACAGTGTGGAACCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320286" ref_strand="+" ref_description="SGN-E320286 [cTOB-21-N9]">
      <seq>ttagctgcgcctcataatcacaacagtagcatcaaactgcaattgcagctatggtgatgcttatgagcagcacctcatccttttctctcctcccactcaactcaaacccctctacatctaccactgccgctgtcgtcggcaactcacccgccgttcttcatagtgtcaactgttgtacagattatctatttaggatcgtttctggccatcggataagacaagtggctgtacggaatagcaatcgaacggctgaggttacttcatcctctgattctgtaactgatttagagtcggcggcgagtgtggtgaggaaattctatgccggaataaataggcgggatttggactctgtcgaagaacttattgctgaggattgtgtgtatgaagaccttgtatttcctcaacctttcgttggccggaaggcaattctagattttttcaagaagttcactgattcagttgggtctgatctgcaatttgttattgacgatatatccaaggaggattcatcagctgttggagtcacatggcacttggaatggangggaagaccttttccttttagcaaaggatgcagcttttatcgattggaagtggtgaatggccagatgaaaatactttatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="82147" stop="77539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81847" g_stop="81426" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81425" i_stop="78139" i_length="3287">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78138" g_stop="78024" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="537" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78023" i_stop="77924" i_length="100">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77923" g_stop="77842" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="619" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E320286" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81847" e_stop="81426"/>
          <exon e_start="78138" e_stop="78024"/>
          <exon e_start="77923" e_stop="77842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCTGCGCCTCATAATCACAACAGTAGCATCAAACTGCAATTGCAGCTATGGTGATGCTTATGAGCAGCACCTCATCCTTTTCTCTCCTCCCACTCAACTCAAACCCCTCTACATCTACCACTGCCGCTGTCGTCGGCAACTCACCCGCCGTTCTTCATAGTGTCAACTGTTGTACAGATTATCTATTTAGGATCGTTTCTGGCCATCGGATAAGACAAGTGGCTGTACGGAATAGCAATCGAACGGCTGAGGTTACTTCATCCTCTGATTCTGTAACTGATTTAGAGTCGGCGGCGAGTGTGGTGAGGAAATTCTATGCCGGAATAAATAGGCGGGATTTGGACTCTGTCGAAGAACTTATTGCTGAGGATTGTGTGTATGAAGACCTTGTATTTCCTCAACCTTTCGTTGGCCGTAAGGTTAGTTATCAACCTGGACTAGTTGTATTTTGAAGACTTTTTTCTGTTGCATTTTGTTTGACTATTTTCTCTCTGGTATATTTAGTTTAAGATGTGAGAAAAGTTCAAACTAAGCTAGGCTTTTCATTCAATAAAACTAAAGATGAGCTGAAACCCTTTGAAAAGAGGCCAAGATTAAACTGAAAATGGAAATTACATTTGGGGATAATAACCAAGTTCGTACTTTCTTCATCCCATTTTATGTGACACCCTTAGATATTTGTGTGTTTGAGATTCATTTCATTAAAGATAAAAGGAAAACTTAAAAGTTAAATTGTTGCTAATCATAGTAAGGTAATACTTCATTTTGAGACGAACTAAAAAGGAAATGCTCTTACATAAAATGGAAGAGAGGGAGTAATTAAATTTATAGGGATTTTGCCAAGAGAAACATCTCCATTTCAAAAGATATGATCCTACTTTCATCAAATTAAAAAGTCCGCTGGTTGATGTAAAGATTAACACCGCCCATGTTGCATAGCATGGAGCTGAATGAATTCACATTCAAATTTACGTGAGATCAAAATAACATCAAAGTGTTCGATGAATGTTTTGGGAACTTCAACTGCAAACAAATGTCCAAGAGCAATGGTTACTGCAAATTTATCAGACTCTCTACTACTCTTAGAAGTGTAAAAAGTATGGAGGAATGCAAAATCATCATCATTATATAGTGCAATATTTGGGCCCTCTCCAGTTACAGCTACAACATCAACTTGAATGATTCGCACACATACAACAACAGTGAAACAACCAACATTTTGCAAATGTCAGAATAACCAATAATAACCTCCTGATGCCCATCATAGTTCTTTATTATGTGCTCCCTACCTAGTGGCAGAATCAGGATTTTCATTAAGGGGTTCGATGGTTGTAGTAAAACGCAATATTTATTCCCTCTCCAGTTACAGCTACAACATCAACTTGAATGATTTGCACTCCTGCAACAACAATGAAACAACCAATATTTGCGAATGTTAGAATAACCAATTATAACCTCCTGATGCCCATCATAGTTTTTTATTATGCGTTCCCTATACCAATTAATTGGTAGTAATCTTCTGACTACCCAACCAGCCAGTGGTGGAACCAGGATGTTTAGTAGGGCTTGAACACGTAACCTCATGGAATTTTCTTATGCCCTTAACCAATAAACTAAATCTTCAACTTGTTTCAAGAGGTGTCAATACTTGTATATATATTTACTAAACCAAAATATGACTTCTATATACAATGTAACTTTCTGACGAAGGGGTTTCGCTTCACACCTCTTGGCCAAGGGTGGGTGCGCCCCTGGATCCAGCTTGTCTCATGTCCTACATGGGCTCAAATAGAGGAACTAGATGCTGTGTTCAACCAGGAAAGGGCCTGCTTATCTCCCCATTAATAATAAGATGTGCATCCTTTTGTAAAATCTCTACATCTAGTTCATCCAAGGCATTTGGAACGGTGGAAATAACATAAGCTCCAACTGAATCATTTCCTAATTCAGTATCTGTTTTTTTTTTTTTAATGAAAATCTGCTTTGAAGGTATTCTAGACTTCTTTGTTGTCAGGCAGAACCACTGTAGTAGGAAGAACCCAAGGTCTTTGCCTTTTTATATCTTTAGTTAGAAACTCCAGTGTTTGCTCTTCATCCCAATTACCATATTTAGGTATTTTGTGATTATATCAATTGCCTATGACCAGGACACCTAGACATGTGAATATAAACAAGTGATTCATCACTAAAATATAGCTGAAGTTTGAGAAACATGAAAATTGACTCTCAGAAACTCAAACCCGATCAAGTATCTCCCAACTGAATCTGAAAGCTTCCTAATTGCCTCAAGTATTGAACAAAACCCACACCAGCCTTCTCTGAAGTTTACCATATGTGCTCATAACAGAAACTATTAGGAAGAGATGCTTCAAGTTTCTTGCGGTTCATACTTTTCTATAAAGAATTTCAAAGTATTGTTCAATAACAACAATCATCCTTGAGTCAACATGATAGAAATCACAACTTCTTTGTCTTAGCTGCTCATGTGACATAGCATAGGGCCAAGGACCAAGATCTCATCTTGCCACCTCAATAACTCAGGGCTTCAGTGTTTCTCCACCTTTAGTAGAGCTATTTCACAATTTTTTCGCCACAGTGCACTTGCCCATTAAAATCTTGACGAGGATACTCAATATGAAAAAGGCAAACTGTCAGCTAGCTTCCACAACTCCATCATTCCTACATCAATGAGTATTATAGCAGGAAGAAAATTATGGCCCAAACTATGAACACAAACAACTTTTACAAACTGCATTTGGAGATTTGGAATCACATCTTTGTAAAAAGTCATTTTGTTTCAATGTCCATCTCAGTATTGGAATTATCACTATTAATAGTAATTCTATTCTCCTCTTTGTTGTTGTTCAAGCCTTTTCCATAATAGAGAAATCACCTGAAAGCCCAGTTTTCTTCTTAGCCTTGTTACTGCTTCCATCCTCTTATTTTTTCACCTTCTTGCACCTCTTTAAAGTTCCATTTACTATAAATTGAAGAACCAGTTCTCCATCATCAACAACCTTATTGGCGTCAGACAAACTATTCTCGATGCTCGATAATTCTAATTCCTTGGGTTTGATGCACTTGAGCTTATGGTCTTCCAAAAACAATCCCTCTACTTCCATGAGGTAGTGGTAAGGTCTGCTACACTCTACCCTCCTGAGACCCTACTTAGTGCGATTTCTCTGGATATGTTGTTGTATCTGTTTGCTTTTCGTGAGTGAAGAATTTGGCCGTAGAGTTCATTATCTTTGTATAGATTTCTCTGTTTTGAGTTGTGATCCACCTCATCTGAAAGTTCTAAAATTTTGTATGAGGTGACACCCTATGTTGCTCGGACTTTTCAACAGTATCATCGGTGCGTGTCCGATTCTTCAAAAGTGGTGCATTTTTGCAGAATTTGACACCGGTGAGGCATCTAAAGTGAGGGGTCCGCACAACTTACAACTCTTTGGGCATGGGATTAGAACGAAATCCATCTCTAATGAACGGACACCCAATGTCGGTTTACTCTGTTTTGTTACTCCATGCTTCACATGTCTAGTACTCAGCATGGTGGCGAAGTGTTAGTCCCATATAAGATAAGTGTATTTGTGATTATATTCGCTTAAAGAAAATCACTACTTGAGCTAATTTTTGGAATTATATCAGGCCTATGTCCTTTTTGCTCATCACTAAGCTTATGTTTGATCTCAAACTATTAATGCAGGCAATTCTAGATTTTTTCAAGAAGTTCACTGATTCAGTTGGTTCTGATCTGCAATTTGTTATTGACGATATATCCAAGGAGGATTCATCAGCTGTTGGAGTCACATGGCACTTGGGTATGGAAAAACTTGTAATACTTTATCTTGTTTTCCATACTGTTTACTAGGAAGATTGATCTTCATTGTCCAGGGTAATTGATTTTGAATATGATAACAGAATGGAGGGGAAGACCTTTTCCTTTTAGCAAAGGATGCAGCTTTTATCGATTGGAAGTGGTGAATGGCCAGATGAAAATACT</genome_strand>
        <mrna_strand>TTAGCTGCGCCTCATAATCACAACAGTAGCATCAAACTGCAATTGCAGCTATGGTGATGCTTATGAGCAGCACCTCATCCTTTTCTCTCCTCCCACTCAACTCAAACCCCTCTACATCTACCACTGCCGCTGTCGTCGGCAACTCACCCGCCGTTCTTCATAGTGTCAACTGTTGTACAGATTATCTATTTAGGATCGTTTCTGGCCATCGGATAAGACAAGTGGCTGTACGGAATAGCAATCGAACGGCTGAGGTTACTTCATCCTCTGATTCTGTAACTGATTTAGAGTCGGCGGCGAGTGTGGTGAGGAAATTCTATGCCGGAATAAATAGGCGGGATTTGGACTCTGTCGAAGAACTTATTGCTGAGGATTGTGTGTATGAAGACCTTGTATTTCCTCAACCTTTCGTTGGCCGGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTCTAGATTTTTTCAAGAAGTTCACTGATTCAGTTGGGTCTGATCTGCAATTTGTTATTGACGATATATCCAAGGAGGATTCATCAGCTGTTGGAGTCACATGGCACTTGG....................................................................................................AATGGANGGGAAGACCTTTTCCTTTTAGCAAAGGATGCAGCTTTTATCGATTGGAAGTGGTGAATGGCCAGATGAAAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294549" ref_strand="+" ref_description="SGN-E294549 [cLET-22-K8]">
      <seq>tatgagcagcacctcatccttttctctcctcccactcaactcaaacccctctacatctaccactgccgctgtcgtcggcaactcacccgccgttcttcatagtgtcaactgttgtacagattatctatttaggatcgtttctggccatcggataagacaagtggctgtacggaatagcaatcgaacggctgaggttacttcatcctctgattctgtaactgatttagagtcggcggcgagtgtggtgaggaaattctatgccggaataaataggcgggatttggactctgtcgaagaacttattgctgaggattgtgtgtatgaagaccttgtatttcctcaacctttcgttggccgtaaggcaattctagattttttcaagaagttcactgattcagttggttctgatctgcaatttgttattgacgatatatccaaggaggattcatcagctgttggagtcacatggcacttggaatggaggggaagaccttttccttttagcaaaggatgcagcttttatcgattggaagtggtgaatggccagatgaaaatactttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="82086" stop="77539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81786" g_stop="81426" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81425" i_stop="78139" i_length="3287">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78138" g_stop="78024" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="476" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78023" i_stop="77924" i_length="100">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77923" g_stop="77842" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="558" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E294549" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81786" e_stop="81426"/>
          <exon e_start="78138" e_stop="78024"/>
          <exon e_start="77923" e_stop="77842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGAGCAGCACCTCATCCTTTTCTCTCCTCCCACTCAACTCAAACCCCTCTACATCTACCACTGCCGCTGTCGTCGGCAACTCACCCGCCGTTCTTCATAGTGTCAACTGTTGTACAGATTATCTATTTAGGATCGTTTCTGGCCATCGGATAAGACAAGTGGCTGTACGGAATAGCAATCGAACGGCTGAGGTTACTTCATCCTCTGATTCTGTAACTGATTTAGAGTCGGCGGCGAGTGTGGTGAGGAAATTCTATGCCGGAATAAATAGGCGGGATTTGGACTCTGTCGAAGAACTTATTGCTGAGGATTGTGTGTATGAAGACCTTGTATTTCCTCAACCTTTCGTTGGCCGTAAGGTTAGTTATCAACCTGGACTAGTTGTATTTTGAAGACTTTTTTCTGTTGCATTTTGTTTGACTATTTTCTCTCTGGTATATTTAGTTTAAGATGTGAGAAAAGTTCAAACTAAGCTAGGCTTTTCATTCAATAAAACTAAAGATGAGCTGAAACCCTTTGAAAAGAGGCCAAGATTAAACTGAAAATGGAAATTACATTTGGGGATAATAACCAAGTTCGTACTTTCTTCATCCCATTTTATGTGACACCCTTAGATATTTGTGTGTTTGAGATTCATTTCATTAAAGATAAAAGGAAAACTTAAAAGTTAAATTGTTGCTAATCATAGTAAGGTAATACTTCATTTTGAGACGAACTAAAAAGGAAATGCTCTTACATAAAATGGAAGAGAGGGAGTAATTAAATTTATAGGGATTTTGCCAAGAGAAACATCTCCATTTCAAAAGATATGATCCTACTTTCATCAAATTAAAAAGTCCGCTGGTTGATGTAAAGATTAACACCGCCCATGTTGCATAGCATGGAGCTGAATGAATTCACATTCAAATTTACGTGAGATCAAAATAACATCAAAGTGTTCGATGAATGTTTTGGGAACTTCAACTGCAAACAAATGTCCAAGAGCAATGGTTACTGCAAATTTATCAGACTCTCTACTACTCTTAGAAGTGTAAAAAGTATGGAGGAATGCAAAATCATCATCATTATATAGTGCAATATTTGGGCCCTCTCCAGTTACAGCTACAACATCAACTTGAATGATTCGCACACATACAACAACAGTGAAACAACCAACATTTTGCAAATGTCAGAATAACCAATAATAACCTCCTGATGCCCATCATAGTTCTTTATTATGTGCTCCCTACCTAGTGGCAGAATCAGGATTTTCATTAAGGGGTTCGATGGTTGTAGTAAAACGCAATATTTATTCCCTCTCCAGTTACAGCTACAACATCAACTTGAATGATTTGCACTCCTGCAACAACAATGAAACAACCAATATTTGCGAATGTTAGAATAACCAATTATAACCTCCTGATGCCCATCATAGTTTTTTATTATGCGTTCCCTATACCAATTAATTGGTAGTAATCTTCTGACTACCCAACCAGCCAGTGGTGGAACCAGGATGTTTAGTAGGGCTTGAACACGTAACCTCATGGAATTTTCTTATGCCCTTAACCAATAAACTAAATCTTCAACTTGTTTCAAGAGGTGTCAATACTTGTATATATATTTACTAAACCAAAATATGACTTCTATATACAATGTAACTTTCTGACGAAGGGGTTTCGCTTCACACCTCTTGGCCAAGGGTGGGTGCGCCCCTGGATCCAGCTTGTCTCATGTCCTACATGGGCTCAAATAGAGGAACTAGATGCTGTGTTCAACCAGGAAAGGGCCTGCTTATCTCCCCATTAATAATAAGATGTGCATCCTTTTGTAAAATCTCTACATCTAGTTCATCCAAGGCATTTGGAACGGTGGAAATAACATAAGCTCCAACTGAATCATTTCCTAATTCAGTATCTGTTTTTTTTTTTTTAATGAAAATCTGCTTTGAAGGTATTCTAGACTTCTTTGTTGTCAGGCAGAACCACTGTAGTAGGAAGAACCCAAGGTCTTTGCCTTTTTATATCTTTAGTTAGAAACTCCAGTGTTTGCTCTTCATCCCAATTACCATATTTAGGTATTTTGTGATTATATCAATTGCCTATGACCAGGACACCTAGACATGTGAATATAAACAAGTGATTCATCACTAAAATATAGCTGAAGTTTGAGAAACATGAAAATTGACTCTCAGAAACTCAAACCCGATCAAGTATCTCCCAACTGAATCTGAAAGCTTCCTAATTGCCTCAAGTATTGAACAAAACCCACACCAGCCTTCTCTGAAGTTTACCATATGTGCTCATAACAGAAACTATTAGGAAGAGATGCTTCAAGTTTCTTGCGGTTCATACTTTTCTATAAAGAATTTCAAAGTATTGTTCAATAACAACAATCATCCTTGAGTCAACATGATAGAAATCACAACTTCTTTGTCTTAGCTGCTCATGTGACATAGCATAGGGCCAAGGACCAAGATCTCATCTTGCCACCTCAATAACTCAGGGCTTCAGTGTTTCTCCACCTTTAGTAGAGCTATTTCACAATTTTTTCGCCACAGTGCACTTGCCCATTAAAATCTTGACGAGGATACTCAATATGAAAAAGGCAAACTGTCAGCTAGCTTCCACAACTCCATCATTCCTACATCAATGAGTATTATAGCAGGAAGAAAATTATGGCCCAAACTATGAACACAAACAACTTTTACAAACTGCATTTGGAGATTTGGAATCACATCTTTGTAAAAAGTCATTTTGTTTCAATGTCCATCTCAGTATTGGAATTATCACTATTAATAGTAATTCTATTCTCCTCTTTGTTGTTGTTCAAGCCTTTTCCATAATAGAGAAATCACCTGAAAGCCCAGTTTTCTTCTTAGCCTTGTTACTGCTTCCATCCTCTTATTTTTTCACCTTCTTGCACCTCTTTAAAGTTCCATTTACTATAAATTGAAGAACCAGTTCTCCATCATCAACAACCTTATTGGCGTCAGACAAACTATTCTCGATGCTCGATAATTCTAATTCCTTGGGTTTGATGCACTTGAGCTTATGGTCTTCCAAAAACAATCCCTCTACTTCCATGAGGTAGTGGTAAGGTCTGCTACACTCTACCCTCCTGAGACCCTACTTAGTGCGATTTCTCTGGATATGTTGTTGTATCTGTTTGCTTTTCGTGAGTGAAGAATTTGGCCGTAGAGTTCATTATCTTTGTATAGATTTCTCTGTTTTGAGTTGTGATCCACCTCATCTGAAAGTTCTAAAATTTTGTATGAGGTGACACCCTATGTTGCTCGGACTTTTCAACAGTATCATCGGTGCGTGTCCGATTCTTCAAAAGTGGTGCATTTTTGCAGAATTTGACACCGGTGAGGCATCTAAAGTGAGGGGTCCGCACAACTTACAACTCTTTGGGCATGGGATTAGAACGAAATCCATCTCTAATGAACGGACACCCAATGTCGGTTTACTCTGTTTTGTTACTCCATGCTTCACATGTCTAGTACTCAGCATGGTGGCGAAGTGTTAGTCCCATATAAGATAAGTGTATTTGTGATTATATTCGCTTAAAGAAAATCACTACTTGAGCTAATTTTTGGAATTATATCAGGCCTATGTCCTTTTTGCTCATCACTAAGCTTATGTTTGATCTCAAACTATTAATGCAGGCAATTCTAGATTTTTTCAAGAAGTTCACTGATTCAGTTGGTTCTGATCTGCAATTTGTTATTGACGATATATCCAAGGAGGATTCATCAGCTGTTGGAGTCACATGGCACTTGGGTATGGAAAAACTTGTAATACTTTATCTTGTTTTCCATACTGTTTACTAGGAAGATTGATCTTCATTGTCCAGGGTAATTGATTTTGAATATGATAACAGAATGGAGGGGAAGACCTTTTCCTTTTAGCAAAGGATGCAGCTTTTATCGATTGGAAGTGGTGAATGGCCAGATGAAAATACT</genome_strand>
        <mrna_strand>TATGAGCAGCACCTCATCCTTTTCTCTCCTCCCACTCAACTCAAACCCCTCTACATCTACCACTGCCGCTGTCGTCGGCAACTCACCCGCCGTTCTTCATAGTGTCAACTGTTGTACAGATTATCTATTTAGGATCGTTTCTGGCCATCGGATAAGACAAGTGGCTGTACGGAATAGCAATCGAACGGCTGAGGTTACTTCATCCTCTGATTCTGTAACTGATTTAGAGTCGGCGGCGAGTGTGGTGAGGAAATTCTATGCCGGAATAAATAGGCGGGATTTGGACTCTGTCGAAGAACTTATTGCTGAGGATTGTGTGTATGAAGACCTTGTATTTCCTCAACCTTTCGTTGGCCGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTCTAGATTTTTTCAAGAAGTTCACTGATTCAGTTGGTTCTGATCTGCAATTTGTTATTGACGATATATCCAAGGAGGATTCATCAGCTGTTGGAGTCACATGGCACTTGG....................................................................................................AATGGAGGGGAAGACCTTTTCCTTTTAGCAAAGGATGCAGCTTTTATCGATTGGAAGTGGTGAATGGCCAGATGAAAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320063" ref_strand="+" ref_description="SGN-E320063 [cTOB-21-O9]">
      <seq>ttagctgcgcctcataatcacaacagtagcatcaaactgcaattgcagctatggtgatgcttatgagcagcacctcatccttttctctcctcccactcaactcaaacccctctacatctaccactgccgctgtcgtcggcaactcacccgccgttcttcatagtgtcaactgttgtacagattatctatttaggatcgtttctggccatcggataagacaagtggctgtacggaatagcaatcgaacggctgaggttacttcatcctctgattctgtaactgatttaaagtcngcggcgagtgtggtgaggaaattctatgccggaataaataggcgggatttggactctgtcgaagaacttattgctgaggattgtgtgtatgaagaccttgtatttcctcaacctttcgttgggcgtaaggcaattctagattttttcaagaagttcactgattcagttggttctgatctgcaatttgttattgacgatatatccaaggaggattcatcagctgttggagtcacatggcacttggaatgggagggaagaccttttcctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0153O03-h6404/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0153O03.2" temp_strand="-" temp_description="C06HBa0153O03.2  AC211055.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0153O03 [organism=Solanum lycopersicum]">
        <position start="82147" stop="77598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81847" g_stop="81426" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81425" i_stop="78139" i_length="3287">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78138" g_stop="78024" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="537" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78023" i_stop="77924" i_length="100">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77923" g_stop="77898" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="563" r_length="26" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0153O03.2" gen_strand="-" ref_id="SGN-E320063" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0153O03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81847" e_stop="81426"/>
          <exon e_start="78138" e_stop="78024"/>
          <exon e_start="77923" e_stop="77898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCTGCGCCTCATAATCACAACAGTAGCATCAAACTGCAATTGCAGCTATGGTGATGCTTATGAGCAGCACCTCATCCTTTTCTCTCCTCCCACTCAACTCAAACCCCTCTACATCTACCACTGCCGCTGTCGTCGGCAACTCACCCGCCGTTCTTCATAGTGTCAACTGTTGTACAGATTATCTATTTAGGATCGTTTCTGGCCATCGGATAAGACAAGTGGCTGTACGGAATAGCAATCGAACGGCTGAGGTTACTTCATCCTCTGATTCTGTAACTGATTTAGAGTCGGCGGCGAGTGTGGTGAGGAAATTCTATGCCGGAATAAATAGGCGGGATTTGGACTCTGTCGAAGAACTTATTGCTGAGGATTGTGTGTATGAAGACCTTGTATTTCCTCAACCTTTCGTTGGCCGTAAGGTTAGTTATCAACCTGGACTAGTTGTATTTTGAAGACTTTTTTCTGTTGCATTTTGTTTGACTATTTTCTCTCTGGTATATTTAGTTTAAGATGTGAGAAAAGTTCAAACTAAGCTAGGCTTTTCATTCAATAAAACTAAAGATGAGCTGAAACCCTTTGAAAAGAGGCCAAGATTAAACTGAAAATGGAAATTACATTTGGGGATAATAACCAAGTTCGTACTTTCTTCATCCCATTTTATGTGACACCCTTAGATATTTGTGTGTTTGAGATTCATTTCATTAAAGATAAAAGGAAAACTTAAAAGTTAAATTGTTGCTAATCATAGTAAGGTAATACTTCATTTTGAGACGAACTAAAAAGGAAATGCTCTTACATAAAATGGAAGAGAGGGAGTAATTAAATTTATAGGGATTTTGCCAAGAGAAACATCTCCATTTCAAAAGATATGATCCTACTTTCATCAAATTAAAAAGTCCGCTGGTTGATGTAAAGATTAACACCGCCCATGTTGCATAGCATGGAGCTGAATGAATTCACATTCAAATTTACGTGAGATCAAAATAACATCAAAGTGTTCGATGAATGTTTTGGGAACTTCAACTGCAAACAAATGTCCAAGAGCAATGGTTACTGCAAATTTATCAGACTCTCTACTACTCTTAGAAGTGTAAAAAGTATGGAGGAATGCAAAATCATCATCATTATATAGTGCAATATTTGGGCCCTCTCCAGTTACAGCTACAACATCAACTTGAATGATTCGCACACATACAACAACAGTGAAACAACCAACATTTTGCAAATGTCAGAATAACCAATAATAACCTCCTGATGCCCATCATAGTTCTTTATTATGTGCTCCCTACCTAGTGGCAGAATCAGGATTTTCATTAAGGGGTTCGATGGTTGTAGTAAAACGCAATATTTATTCCCTCTCCAGTTACAGCTACAACATCAACTTGAATGATTTGCACTCCTGCAACAACAATGAAACAACCAATATTTGCGAATGTTAGAATAACCAATTATAACCTCCTGATGCCCATCATAGTTTTTTATTATGCGTTCCCTATACCAATTAATTGGTAGTAATCTTCTGACTACCCAACCAGCCAGTGGTGGAACCAGGATGTTTAGTAGGGCTTGAACACGTAACCTCATGGAATTTTCTTATGCCCTTAACCAATAAACTAAATCTTCAACTTGTTTCAAGAGGTGTCAATACTTGTATATATATTTACTAAACCAAAATATGACTTCTATATACAATGTAACTTTCTGACGAAGGGGTTTCGCTTCACACCTCTTGGCCAAGGGTGGGTGCGCCCCTGGATCCAGCTTGTCTCATGTCCTACATGGGCTCAAATAGAGGAACTAGATGCTGTGTTCAACCAGGAAAGGGCCTGCTTATCTCCCCATTAATAATAAGATGTGCATCCTTTTGTAAAATCTCTACATCTAGTTCATCCAAGGCATTTGGAACGGTGGAAATAACATAAGCTCCAACTGAATCATTTCCTAATTCAGTATCTGTTTTTTTTTTTTTAATGAAAATCTGCTTTGAAGGTATTCTAGACTTCTTTGTTGTCAGGCAGAACCACTGTAGTAGGAAGAACCCAAGGTCTTTGCCTTTTTATATCTTTAGTTAGAAACTCCAGTGTTTGCTCTTCATCCCAATTACCATATTTAGGTATTTTGTGATTATATCAATTGCCTATGACCAGGACACCTAGACATGTGAATATAAACAAGTGATTCATCACTAAAATATAGCTGAAGTTTGAGAAACATGAAAATTGACTCTCAGAAACTCAAACCCGATCAAGTATCTCCCAACTGAATCTGAAAGCTTCCTAATTGCCTCAAGTATTGAACAAAACCCACACCAGCCTTCTCTGAAGTTTACCATATGTGCTCATAACAGAAACTATTAGGAAGAGATGCTTCAAGTTTCTTGCGGTTCATACTTTTCTATAAAGAATTTCAAAGTATTGTTCAATAACAACAATCATCCTTGAGTCAACATGATAGAAATCACAACTTCTTTGTCTTAGCTGCTCATGTGACATAGCATAGGGCCAAGGACCAAGATCTCATCTTGCCACCTCAATAACTCAGGGCTTCAGTGTTTCTCCACCTTTAGTAGAGCTATTTCACAATTTTTTCGCCACAGTGCACTTGCCCATTAAAATCTTGACGAGGATACTCAATATGAAAAAGGCAAACTGTCAGCTAGCTTCCACAACTCCATCATTCCTACATCAATGAGTATTATAGCAGGAAGAAAATTATGGCCCAAACTATGAACACAAACAACTTTTACAAACTGCATTTGGAGATTTGGAATCACATCTTTGTAAAAAGTCATTTTGTTTCAATGTCCATCTCAGTATTGGAATTATCACTATTAATAGTAATTCTATTCTCCTCTTTGTTGTTGTTCAAGCCTTTTCCATAATAGAGAAATCACCTGAAAGCCCAGTTTTCTTCTTAGCCTTGTTACTGCTTCCATCCTCTTATTTTTTCACCTTCTTGCACCTCTTTAAAGTTCCATTTACTATAAATTGAAGAACCAGTTCTCCATCATCAACAACCTTATTGGCGTCAGACAAACTATTCTCGATGCTCGATAATTCTAATTCCTTGGGTTTGATGCACTTGAGCTTATGGTCTTCCAAAAACAATCCCTCTACTTCCATGAGGTAGTGGTAAGGTCTGCTACACTCTACCCTCCTGAGACCCTACTTAGTGCGATTTCTCTGGATATGTTGTTGTATCTGTTTGCTTTTCGTGAGTGAAGAATTTGGCCGTAGAGTTCATTATCTTTGTATAGATTTCTCTGTTTTGAGTTGTGATCCACCTCATCTGAAAGTTCTAAAATTTTGTATGAGGTGACACCCTATGTTGCTCGGACTTTTCAACAGTATCATCGGTGCGTGTCCGATTCTTCAAAAGTGGTGCATTTTTGCAGAATTTGACACCGGTGAGGCATCTAAAGTGAGGGGTCCGCACAACTTACAACTCTTTGGGCATGGGATTAGAACGAAATCCATCTCTAATGAACGGACACCCAATGTCGGTTTACTCTGTTTTGTTACTCCATGCTTCACATGTCTAGTACTCAGCATGGTGGCGAAGTGTTAGTCCCATATAAGATAAGTGTATTTGTGATTATATTCGCTTAAAGAAAATCACTACTTGAGCTAATTTTTGGAATTATATCAGGCCTATGTCCTTTTTGCTCATCACTAAGCTTATGTTTGATCTCAAACTATTAATGCAGGCAATTCTAGATTTTTTCAAGAAGTTCACTGATTCAGTTGGTTCTGATCTGCAATTTGTTATTGACGATATATCCAAGGAGGATTCATCAGCTGTTGGAGTCACATGGCACTTGGGTATGGAAAAACTTGTAATACTTTATCTTGTTTTCCATACTGTTTACTAGGAAGATTGATCTTCATTGTCCAGGGTAATTGATTTTGAATATGATAACAGAATGGAGGGGAAGACCTTTTCCTTTT</genome_strand>
        <mrna_strand>TTAGCTGCGCCTCATAATCACAACAGTAGCATCAAACTGCAATTGCAGCTATGGTGATGCTTATGAGCAGCACCTCATCCTTTTCTCTCCTCCCACTCAACTCAAACCCCTCTACATCTACCACTGCCGCTGTCGTCGGCAACTCACCCGCCGTTCTTCATAGTGTCAACTGTTGTACAGATTATCTATTTAGGATCGTTTCTGGCCATCGGATAAGACAAGTGGCTGTACGGAATAGCAATCGAACGGCTGAGGTTACTTCATCCTCTGATTCTGTAACTGATTTAAAGTCNGCGGCGAGTGTGGTGAGGAAATTCTATGCCGGAATAAATAGGCGGGATTTGGACTCTGTCGAAGAACTTATTGCTGAGGATTGTGTGTATGAAGACCTTGTATTTCCTCAACCTTTCGTTGGGCGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTCTAGATTTTTTCAAGAAGTTCACTGATTCAGTTGGTTCTGATCTGCAATTTGTTATTGACGATATATCCAAGGAGGATTCATCAGCTGTTGGAGTCACATGGCACTTGG....................................................................................................AATGGGAGGGAAGACCTTTTCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>79</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="3839" PGL_stop="4241"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3839" e_stop="4241"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="3839" e_stop="4241" e_length="403"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3839" stop="4241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATATATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTTTATAATTGTGGTTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAACCCTAATCTCTTTGTTAATGATGGGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATAGGGTGTCACGAACCGACACGTAGATTTAGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACTGACACG</gDNA_template>
            <first_frame> *  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  A  N  D  I  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  A  *  M  *  F  Y  N  C  G  Y  I  S  M  M  K  L  L  N  P  K  S  C  K  T  L  I  S  L  L  M  M  G  P  W  Y  K  R  R  R  D  E  L  K  *  *  D  *  *  C  L  G  K  K  E  G  L  M  N  *  *  K  E  I  R  G  *  G  V  T  N  R  H  V  D  L  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  *  H  </first_frame>
            <second_frame>  N  L  R  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  M  I  Y  I  D  N  I  V  N  P  A  M  C  L  I  V  C  L  H  E  C  N  F  I  I  V  V  I  *  A  *  *  S  Y  *  I  P  N  L  A  K  P  *  S  L  C  *  *  W  G  L  G  I  K  E  G  V  M  N  *  N  N  E  I  D  D  A  L  V  R  K  K  A  *  *  I  D  R  R  R  L  G  D  R  V  S  R  T  D  T  *  I  *  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T </second_frame>
            <third_frame>   I  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  I  L  I  I  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  L  *  L  W  L  Y  K  H  D  E  V  I  E  S  Q  I  L  Q  N  P  N  L  F  V  N  D  G  A  L  V  *  K  K  A  *  *  T  K  I  M  R  L  M  M  P  W  *  E  R  R  L  D  E  L  I  E  G  D  *  G  I  G  C  H  E  P  T  R  R  F  R  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  L  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0153O03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="4765" PGL_stop="4968"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4765" e_stop="4968"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="4765" e_stop="4968" e_length="204"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4765" stop="4968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298638" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATTACTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGTCTTGATGCTTTGAAGTTCCGGCATGGACTAGCTTTTATGTATTTTTAGCTTCTTAGAAACTCTTAGATTTAGTAGTTTGAAGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATATTTATTGATTTT</gDNA_template>
            <first_frame> S  L  L  R  I  S  G  *  A  N  A  S  S  L  D  W  I  F  L  F  M  S  *  C  F  E  V  P  A  W  T  S  F  Y  V  F  L  A  S  *  K  L  L  D  L  V  V  *  S  R  C  S  C  D  D  D  F  Q  I  L  G  I  I  I  F  I  D  F </first_frame>
            <second_frame>  H  Y  S  G  Y  Q  G  E  L  M  L  L  A  W  T  G  S  S  S  S  C  L  D  A  L  K  F  R  H  G  L  A  F  M  Y  F  *  L  L  R  N  S  *  I  *  *  F  E  V  D  V  L  V  M  M  T  S  R  F  W  G  *  *  Y  L  L  I   </second_frame>
            <third_frame>   I  T  P  D  I  R  V  S  *  C  F  *  L  G  L  D  L  P  L  H  V  L  M  L  *  S  S  G  M  D  *  L  L  C  I  F  S  F  L  E  T  L  R  F  S  S  L  K  *  M  F  L  *  *  *  L  P  D  F  G  D  N  N  I  Y  *  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0153O03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="8121" PGL_stop="6049"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8121" e_stop="6049"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="8121" e_stop="6049" e_length="2073"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8121" stop="7409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8121" stop="7526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8121" stop="7596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8050" stop="7371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8050" stop="7692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7601" stop="6943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7129" stop="6799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6838" stop="6049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6836" stop="6303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353805" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCTATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATTTTCCTCCCTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAACCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGATATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAGCCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACAGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCCTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCAATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATTTGGTGTCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTGGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCTCAGGCTTGGCTAACGTCAGAGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCAAAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATATAAATTTAGACCGTTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCGTTTTTCCCATCACCTCGGCCGTTTTGGTGACCACCATTACCCCGACCACCACGTCCTCAAGAATAACGGCCTCTACCACGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGTAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTACGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGACATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTACCGTAGCTGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCACTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTGCGGGGTATATACTT</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  I  F  L  P  T  F  R  V  Y  Q  Y  V  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  T  H  E  R  S  R  G  I  R  K  T  K  R  Y  H  Y  K  F  V  M  P  I  P  G  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  A  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  T  L  A  Q  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  S  N  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  T  E  V  N  I  P  I  W  C  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  D  H  R  N  R  L  N  R  R  Y  L  G  G  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  L  R  L  G  *  R  Q  S  F  S  I  T  I  Q  D  R  K  I  R  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  Q  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  I  *  I  *  T  V  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  *  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  I  C  L  S  I  A  P  T  M  L  *  C  S  G  S  V  F  P  I  T  S  A  V  L  V  T  T  I  T  P  T  T  T  S  S  R  I  T  A  S  T  T  T  T  S  T  S  S  H  W  G  S  I  T  L  F  W  T  I  P  P  N  M  S  S  L  P  T  S  I  T  L  S  G  V  K  H  R  S  L  R  V  V  L  T  G  L  R  W  T  P  N  Y  S  L  *  *  R  L  N  G  S  N  *  V  T  Y  G  T  L  S  S  R  V  R  T  I  K  L  T  S  L  S  K  P  L  *  C  R  *  H  G  E  F  I  W  L  H  S  F  H  L  Y  H  E  I  Y  H  F  L  E  G  F  Y  R  S  C  Y  L  *  G  *  N  P  Q  L  *  P  Q  P  L  H  K  T  T  N  P  L  L  W  T  E  T  K  L  G  G  I  S  G  *  C  T  K  L  S  L  I  C  S  N  R  H  P  T  L  L  *  A  Q  E  L  I  S  F  P  I  P  Q  S  A  G  Y  I  L </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  L  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  F  S  S  L  L  L  E  Y  I  S  M  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  T  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  L  *  C  P  Y  L  V  L  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  F  G  V  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  S  G  L  A  N  V  R  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  K  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  Y  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  F  F  P  S  P  R  P  F  W  *  P  P  L  P  R  P  P  R  P  Q  E  *  R  P  L  P  R  P  P  L  P  L  A  I  G  G  L  *  L  C  F  G  Q  F  L  L  I  C  P  V  S  P  H  P  *  H  S  L  E  S  S  I  G  L  S  E  *  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  M  G  R  T  E  *  P  T  E  P  C  P  L  E  *  E  P  L  N  S  P  P  F  R  N  L  F  D  V  D  D  M  V  N  S  S  G  F  T  P  S  T  S  T  T  K  S  T  T  S  W  K  D  F  T  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  K  R  R  I  H  S  C  G  L  K  Q  S  W  V  A  Y  L  D  S  A  R  N  L  A  S  Y  A  V  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y   </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  Y  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  F  P  P  Y  F  *  S  I  S  V  C  H  Q  *  I  R  S  Q  R  D  P  N  M  A  *  K  P  R  S  S  N  S  *  T  Q  Q  G  H  S  *  D  Q  K  I  S  L  Q  I  C  N  A  H  T  W  F  *  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  S  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  S  T  A  G  S  L  C  T  S  E  N  S  H  P  S  S  L  Q  T  K  Q  E  H  P  K  E  M  H  L  V  *  *  N  P  C  S  T  T  L  E  V  G  L  L  T  L  L  T  P  R  E  Q  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  Y  R  S  Q  Y  P  Y  L  V  S  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  G  P  P  K  P  T  Q  S  K  V  L  G  W  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  E  F  *  H  Y  N  P  R  S  Q  N  S  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  K  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  I  N  L  D  R  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  L  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  H  L  S  V  H  C  P  Y  H  V  V  M  *  W  L  R  F  S  H  H  L  G  R  F  G  D  H  H  Y  P  D  H  H  V  L  K  N  N  G  L  Y  H  D  H  L  Y  L  *  P  L  G  V  Y  N  S  V  L  D  N  S  S  *  Y  V  Q  S  P  H  I  H  N  T  L  W  S  Q  A  *  V  S  Q  S  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  W  V  E  L  S  N  L  R  N  P  V  L  *  S  K  N  H  *  T  H  L  P  F  E  T  S  L  M  S  M  T  W  *  I  H  L  A  S  L  L  P  P  L  P  R  N  L  P  L  L  G  R  I  L  P  *  L  L  P  V  R  L  K  S  A  T  L  T  S  T  P  S  Q  N  D  E  S  T  L  V  D  *  N  K  V  G  W  H  I  W  I  V  H  E  T  *  P  H  M  Q  *  P  T  S  Y  L  A  L  G  S  R  T  H  L  F  S  Y  P  S  K  C  G  V  Y  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153O03.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7956" stop="7618"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLTLRELGIKLFLPQHFQYHSQMLLIFLPTFRVYQYVINKYDHKEIQIWLKNPVHQTHERSRGIRKTKRYHYKFVMPIPGSKSSLWHIRCPYFQLMIAGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153O03.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6380" stop="6051"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLNSPPFRNLFDVDDMVNSSGFTPSTSTTKSTTSWKDFTVAATCKAEIRNSDLNPFTKRRIHSCGLKQSWVAYLDSARNLASYAVTDILPCSRLKNSSLFLSLKVRGIY</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153O03.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6690" stop="6436"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSVFPITSAVLVTTITPTTTSSRITASTTTTSTSSHWGSITLFWTIPPNMSSLPTSITLSGVKHRSLRVVLTGLRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153O03.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7394" stop="7149"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLFGVIPGRSAGNTSRNSRTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="6105" PGL_stop="7549"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6105" e_stop="6277"/>
            <exon e_start="7022" e_stop="7549"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.942"/>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="6105" e_stop="6277" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="6278" i_stop="7021" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.909">
            <gDNA_exon_boundary e_start="7022" e_stop="7549" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6105" stop="6277"/>
              <exon start="7022" stop="7549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACCCAACTTTGTTTCAGTCCACAAGAGTGGATTCGTCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCAGCTACGGTAAAATCCTTCCAAG : AAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGAATTTTGCGATCTTGGATTGTAATGCTAAAACTCTGACGTTAGCCAAGCCTGAGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACCACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGACACCAAATAGGGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATTGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAGGGTTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCTGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</gDNA_template>
            <first_frame> A  R  *  D  V  G  Y  C  I  *  G  *  V  S  C  T  I  Q  I  C  H  P  T  L  F  Q  S  T  R  V  D  S  S  F  C  E  G  V  E  V  R  V  A  D  F  S  L  T  G  S  S  Y  G  K  I  L  P  R :   N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  E  F  C  D  L  G  L  *  C  *  N  S  D  V  S  Q  A  *  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  H  P  S  T  F  D  *  V  G  F  G  G  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  D  T  K  *  G  Y  *  L  L  Y  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  C  S  R  G  V  K  R  V  K  S  P  T  S  R  V  V  E  Q  G  F  H  *  T  K  C  I  S  L  G  C  S  C  F  V  C  K  E  E  G  W  E  F  S  D  V  H  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  T  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  W  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  V  K  S  F  Q   : E  M  D  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  L  T  L  A  K  P  E  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  T  P  N  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  I  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  L  L  H  M  R  L  S  F  V  H  Y  P  D  M  P  P  N  F  V  S  V  H  K  S  G  F  V  V  L  *  R  G  *  G  Q  S  C  G  F  Q  P  Y  R  *  Q  L  R  *  N  P  S  K  :  K  W  M  I  L  M  *  F  W  V  *  L  G  F  L  R  I  L  R  S  W  I  V  M  L  K  L  *  R  *  P  S  L  R  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  P  P  K  Y  L  R  L  S  R  F  R  W  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  *  H  Q  I  G  I  L  T  S  V  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  L  L  P  R  S  *  E  S  *  K  P  N  F  K  S  C  *  A  R  V  S  L  D  Q  V  H  L  L  G  V  L  L  F  C  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153O03.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6106" stop="6277"/>
                    <exon start="7022" stop="7548"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVTAYEAKFRALSRYATQLCFSPQEWIRRFVKGLRSELRISALQVAATVKSFQEMDDFDVILGMTWLSPNFAILDCNAKTLTLAKPETDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDDTTQVPSIESVSVVREFLDVFPADLPGMTPNRDIDFCIDLEPGTRPISIPPYRIAPAELRELKAQLQELLSKGFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="11859" PGL_stop="12400"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11859" e_stop="12400"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="11859" e_stop="12400" e_length="542"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11859" stop="12400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353207" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGAAAGTGGAACTCCATGCAATCGAACAATTTCTGAGATGTAAATTTTGGCTAACTTCTCTGCATTATAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAATCTGTCCACAATTACCCAAATAGAGTCAAACTTCCCCAATGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTCTGGTGGTCATACTTTACTTGCTGACAATTTGGACATTTGGCAACAAAATCCACAATGTCGCGCTTCATCCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCAGGATGTATAGAATATCTGGAACTATGAGCCTCTGTAAGAATAGTATGGATCAAATCATCAACACGGGGCACACATACTCATCCCTTAATTCTCAAAACACCTTCCTCATGCATTATTGCTTCTTT</gDNA_template>
            <first_frame> S  A  C  N  V  F  Q  N  L  E  V  N  C  V  P  L  S  D  M  M  E  S  G  T  P  C  N  R  T  I  S  E  M  *  I  L  A  N  F  S  A  L  *  V  T  L  T  G  M  K  *  A  D  L  V  N  L  S  T  I  T  Q  I  E  S  N  F  P  N  V  F  G  R  P  T  T  K  S  I  A  I  L  S  H  F  H  S  G  M  G  I  L  *  S  V  P  P  G  L  W  W  S  Y  F  T  C  *  Q  F  G  H  L  A  T  K  S  T  M  S  R  F  I  L  L  H  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  S  V  R  I  V  W  I  K  S  S  T  R  G  T  H  T  H  P  L  I  L  K  T  P  S  S  C  I  I  A  S   </first_frame>
            <second_frame>  P  H  A  M  F  S  K  T  *  K  *  T  A  Y  L  Y  L  I  *  W  K  V  E  L  H  A  I  E  Q  F  L  R  C  K  F  W  L  T  S  L  H  Y  K  S  P  *  P  E  *  N  E  Q  T  *  L  I  C  P  Q  L  P  K  *  S  Q  T  S  P  M  S  L  E  D  Q  P  R  S  P  L  Q  F  S  P  T  S  I  Q  E  W  A  F  S  E  V  F  L  R  A  S  G  G  H  T  L  L  A  D  N  L  D  I  W  Q  Q  N  P  Q  C  R  A  S  S  Y  S  T  K  S  V  A  L  G  H  G  T  S  W  L  H  Q  D  V  *  N  I  W  N  Y  E  P  L  *  E  *  Y  G  S  N  H  Q  H  G  A  H  I  L  I  P  *  F  S  K  H  L  P  H  A  L  L  L  L  </second_frame>
            <third_frame>   R  M  Q  C  F  P  K  L  R  S  K  L  R  T  S  I  *  Y  D  G  K  W  N  S  M  Q  S  N  N  F  *  D  V  N  F  G  *  L  L  C  I  I  S  H  L  D  R  N  E  M  S  R  L  S  *  S  V  H  N  Y  P  N  R  V  K  L  P  Q  C  L  W  K  T  N  H  E  V  H  C  N  S  L  P  L  P  F  R  N  G  H  S  L  K  C  S  S  G  P  L  V  V  I  L  Y  L  L  T  I  W  T  F  G  N  K  I  H  N  V  A  L  H  P  T  P  P  K  V  L  L  *  V  T  V  H  L  G  C  T  R  M  Y  R  I  S  G  T  M  S  L  C  K  N  S  M  D  Q  I  I  N  T  G  H  T  Y  S  S  L  N  S  Q  N  T  F  L  M  H  Y  C  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153O03.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12049" stop="12285"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQTSPMSLEDQPRSPLQFSPTSIQEWAFSEVFLRASGGHTLLADNLDIWQQNPQCRASSYSTKSVALGHGTSWLHQDV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153O03.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12026" stop="12250"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVHNYPNRVKLPQCLWKTNHEVHCNSLPLPFRNGHSLKCSSGPLVVILYLLTIWTFGNKIHNVALHPTPPKVLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="13118" PGL_stop="13869"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13118" e_stop="13869"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="13118" e_stop="13869" e_length="752"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13118" stop="13830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13118" stop="13713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13118" stop="13643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13189" stop="13869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTAACAAATCGACGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTTTGACACATTAGTAGGTATTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACATTGCATCTAGCCAAAACTCACACTTGGAGAATTTTGCATAAAGCTTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATATTCCTTCTTGCTCTTTAAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCTAGATATGGCTTAAAAATCCCATTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTCCGAAAAAGCAGTCTTTGGCACATCCGTTGCCCGCATTTTCAATTGATGATAACCGGACCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGTTCTTAATTGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGAGAAGCACTTGGTCTAATGAATCCTTCGCTCAACAACTCTTGAAGTTGGGCATTTAACTCTCTCAACTCCGTGGGAGCCATTCTATAAGAGGGATATAGAAATGGGGCGAGTA</gDNA_template>
            <first_frame> E  S  L  N  K  S  T  V  I  A  S  *  T  N  K  A  P  Y  F  *  H  I  S  R  Y  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  P  I  L  R  N  H  M  P  Q  E  G  H  C  I  *  P  K  L  T  L  G  E  F  C  I  K  L  F  S  L  N  I  S  N  T  I  L  K  C  S  S  Y  S  F  L  L  F  K  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  R  Y  G  L  K  I  P  F  I  K  L  M  K  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  S  S  L  W  H  I  R  C  P  H  F  Q  L  M  I  T  G  P  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  N  G  I  L  V  L  N  C  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  T  P  I  L  L  L  H  K  *  H  R  S  T  P  R  R  S  T  W  S  N  E  S  F  A  Q  Q  L  L  K  L  G  I  *  L  S  Q  L  R  G  S  H  S  I  R  G  I  *  K  W  G  E   </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  K  P  T  K  L  L  I  F  D  T  L  V  G  I  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  I  A  S  S  Q  N  S  H  L  E  N  F  A  *  S  F  S  P  S  T  F  P  I  Q  F  S  S  A  P  H  I  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  Q  R  D  L  D  M  A  *  K  S  H  S  S  S  S  *  K  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  S  E  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  M  G  Y  L  F  L  I  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  N  T  G  A  P  Q  G  E  A  L  G  L  M  N  P  S  L  N  N  S  *  S  W  A  F  N  S  L  N  S  V  G  A  I  L  *  E  G  Y  R  N  G  A  S  </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  N  S  *  L  N  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  P  H  P  *  K  P  H  A  P  R  R  T  L  H  L  A  K  T  H  T  W  R  I  L  H  K  A  F  L  P  Q  H  F  Q  Y  N  S  Q  V  L  L  I  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  I  *  I  W  L  K  N  P  I  H  Q  A  H  E  S  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  P  K  K  Q  S  L  A  H  P  L  P  A  F  S  I  D  D  N  R  T  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  W  D  T  C  S  *  L  L  P  C  S  T  A  G  S  L  C  T  S  E  N  S  H  P  S  S  S  Q  I  T  P  E  H  P  K  E  K  H  L  V  *  *  I  L  R  S  T  T  L  E  V  G  H  L  T  L  S  T  P  W  E  P  F  Y  K  R  D  I  E  M  G  R  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153O03.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13283" stop="13510"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLTLGEFCIKLFSLNISNTILKCSSYSFLLFKYTNISSINTITKRSRYGLKIPFIKLMKAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="14106" PGL_stop="14436"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14106" e_stop="14436"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="14106" e_stop="14436" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14106" stop="14436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTGGCTAACATCACAGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATAAAACAATACATAAGCAATGCAATCACAAACCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  L  T  S  Q  F  *  H  Y  N  P  R  S  Q  N  S  E  K  A  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  R  *  P  S  L  H  K  Y  C  S  P  Q  K  S  P  D  Q  T  Y  I  L  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  *  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  K  T  I  H  K  Q  C  N  H  K  P  </first_frame>
            <second_frame>  I  C  P  R  L  G  *  H  H  S  F  S  I  T  I  Q  D  R  K  I  R  R  K  P  S  H  T  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  V  Y  I  S  I  A  P  H  K  S  H  Q  T  R  P  I  Y  F  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  F  T  M  *  I  K  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  I  S  N  A  I  T  N  Q </second_frame>
            <third_frame>   S  V  P  G  L  A  N  I  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  V  T  R  P  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  *  N  N  T  *  A  M  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0153O03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="15037" PGL_stop="15700"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15037" e_stop="15700"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="15037" e_stop="15700" e_length="664"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15037" stop="15700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCCGCTCTTGTGGACTGAAATAAAGTTGGGTGGCATACCTGGATAATGCACGAAACTTAGCCTCATATGCGGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTACGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGGAACTGATAAGTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAGGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCTGTAGTTAGACGAGGAAACATGTCTATTTCCAATGAGGCATCCATGCGGGGAGCCACAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGTAGAAAACACTGGAGGCGCTTGGCCTTGATCACATAACCCGCTAAGATAAGCAAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGTAATTCCTCATTCTGTACTTGTTCATTTTCCCCATCCTCCCCTTCT</gDNA_template>
            <first_frame> N  P  L  L  W  T  E  I  K  L  G  G  I  P  G  *  C  T  K  L  S  L  I  C  G  N  R  H  P  T  L  L  *  A  Q  E  L  I  S  F  P  I  P  Q  S  T  G  D  I  L  L  H  K  Q  A  R  E  *  C  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  E  L  I  S  H  K  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  V  G  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  C  S  *  T  R  K  H  V  Y  F  Q  *  G  I  H  A  G  S  H  S  S  R  M  L  Y  L  R  S  L  R  C  W  C  R  K  H  W  R  R  L  A  L  I  T  *  P  A  K  I  S  K  N  L  I  D  H  L  *  G  R  L  G  W  *  F  L  I  L  Y  L  F  I  F  P  I  L  P  F  </first_frame>
            <second_frame>  I  R  S  C  G  L  K  *  S  W  V  A  Y  L  D  N  A  R  N  L  A  S  Y  A  V  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  D  A  Q  V  I  G  G  A  S  V  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  W  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  M  S  I  S  N  E  A  S  M  R  G  A  T  V  A  A  C  C  T  S  G  A  *  G  A  G  V  E  N  T  G  G  A  W  P  *  S  H  N  P  L  R  *  A  R  T  *  L  I  I  S  R  V  G  W  G  G  N  S  S  F  C  T  C  S  F  S  P  S  S  P  S </second_frame>
            <third_frame>   S  A  L  V  D  *  N  K  V  G  W  H  T  W  I  M  H  E  T  *  P  H  M  R  *  P  T  S  Y  L  A  L  G  S  R  T  H  L  F  S  Y  P  S  K  Y  G  G  Y  T  S  P  *  T  S  *  R  M  M  P  K  S  *  V  V  P  L  L  V  D  T  Q  H  V  T  A  T  T  F  W  R  S  L  G  T  D  K  S  Q  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  R  R  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  L  *  L  D  E  E  T  C  L  F  P  M  R  H  P  C  G  E  P  Q  *  P  H  V  V  P  P  E  P  E  V  L  V  *  K  T  L  E  A  L  G  L  D  H  I  T  R  *  D  K  Q  E  P  D  *  S  S  L  G  *  V  G  V  V  I  P  H  S  V  L  V  H  F  P  H  P  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0153O03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="15757" PGL_stop="15204"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15757" e_stop="15204"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="15757" e_stop="15204" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15757" stop="15204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCTGGCCTATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTACAGAATGAGGAATTACCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATGTGATCAAGGCCAAGCGCCTCCAGTGTTTTCTACACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGACATGTTTCCTCGTCTAACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTCCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> A  W  P  I  W  Y  *  G  G  D  S  S  T  D  *  G  S  S  K  R  R  G  G  W  G  K  *  T  S  T  E  *  G  I  T  T  P  T  Y  P  R  D  D  Q  S  G  S  C  L  S  *  R  V  M  *  S  R  P  S  A  S  S  V  F  Y  T  S  T  S  G  S  G  G  T  T  C  G  Y  C  G  S  P  H  G  C  L  I  G  N  R  H  V  S  S  S  N  Y  R  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  S  V  P  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  G  L  S  G  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  D  G  E  N  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  L  E  M  I  N  Q  V  L  A  Y  L  S  G  L  C  D  Q  G  Q  A  P  P  V  F  S  T  P  A  P  Q  A  P  E  V  Q  H  A  A  T  V  A  P  R  M  D  A  S  L  E  I  D  M  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  Y  L  V  L  G  R  *  L  L  H  R  L  R  K  *  *  E  K  G  R  M  G  K  M  N  K  Y  R  M  R  N  Y  H  P  N  L  P  *  R  *  S  I  R  F  L  L  I  L  A  G  Y  V  I  K  A  K  R  L  Q  C  F  L  H  Q  H  L  R  L  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  P  H  W  K  *  T  C  F  L  V  *  L  Q  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  L  I  S  S  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153O03.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15756" stop="15205"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PGLSGTRAVTPPPTEEVVREGEDGENEQVQNEELPPQPTLEMINQVLAYLSGLCDQGQAPPVFSTPAPQAPEVQHAATVAPRMDASLEIDMFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVTYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="21809" PGL_stop="22462"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21809" e_stop="22462"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="21809" e_stop="22462" e_length="654"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21809" stop="22462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATGATCAACCAGGTTCTTACTTATCTTAGCGGGTTATCTGATCGAGGCCAGACACCTCCAGTGTTTCTTGTACCAGCACCTCAGGTTCCAGGAGTACAACATGCAACTGTTGTGGCTCCCCGCATGGATGCCTCATTGGAAGTAGGCACGTTTCCTCGATTGACTACAGGGTCTATAATGACAAGTGATCAACATGAACTTTTCACTAAATTCTTAAAGTTGAAACCTCCTGTCTTCAAGGGTGCTAAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGATTCGGTGTTGATTTTGTGACCTACCAGTTTCAGGGGAATGCCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACAGGCACCACCTATGACTTGGGAATCATTCTCTAGCTTATTTATGGAGAAGTATATACCCCGGACTTTGAGGGATAGGAGGAGAGATGAGTTCTTGAGCCTATAGCAAGGAAGGATGTCTGTTGCCGCTTATGAGGCCAAATTTCGTGCGCTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCATAAGAGCGGATTCGCCGCTTTGTGAAAGGATTGAGGTTAGATTTGCAGATCCCAGTTACAGGTAGCT</gDNA_template>
            <first_frame> R  *  S  T  R  F  L  L  I  L  A  G  Y  L  I  E  A  R  H  L  Q  C  F  L  Y  Q  H  L  R  F  Q  E  Y  N  M  Q  L  L  W  L  P  A  W  M  P  H  W  K  *  A  R  F  L  D  *  L  Q  G  L  *  *  Q  V  I  N  M  N  F  S  L  N  S  *  S  *  N  L  L  S  S  R  V  L  N  L  R  M  P  M  I  F  W  L  I  V  M  S  C  Y  I  R  W  T  *  *  N  D  S  V  L  I  L  *  P  T  S  F  R  G  M  P  K  C  G  G  G  R  M  L  S  V  N  Q  H  R  H  H  L  *  L  G  N  H  S  L  A  Y  L  W  R  S  I  Y  P  G  L  *  G  I  G  G  E  M  S  S  *  A  Y  S  K  E  G  C  L  L  P  L  M  R  P  N  F  V  R  Y  P  G  M  P  P  S  F  A  S  V  H  K  S  G  F  A  A  L  *  K  D  *  G  *  I  C  R  S  Q  L  Q  V  A </first_frame>
            <second_frame>  D  D  Q  P  G  S  Y  L  S  *  R  V  I  *  S  R  P  D  T  S  S  V  S  C  T  S  T  S  G  S  R  S  T  T  C  N  C  C  G  S  P  H  G  C  L  I  G  S  R  H  V  S  S  I  D  Y  R  V  Y  N  D  K  *  S  T  *  T  F  H  *  I  L  K  V  E  T  S  C  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  A  A  T  *  D  G  H  S  R  T  I  R  C  *  F  C  D  L  P  V  S  G  E  C  Q  N  V  V  A  V  V  C  *  V  S  T  S  T  G  T  T  Y  D  L  G  I  I  L  *  L  I  Y  G  E  V  Y  T  P  D  F  E  G  *  E  E  R  *  V  L  E  P  I  A  R  K  D  V  C  C  R  L  *  G  Q  I  S  C  A  I  Q  V  C  H  P  A  L  L  Q  S  I  R  A  D  S  P  L  C  E  R  I  E  V  R  F  A  D  P  S  Y  R  *   </second_frame>
            <third_frame>   M  I  N  Q  V  L  T  Y  L  S  G  L  S  D  R  G  Q  T  P  P  V  F  L  V  P  A  P  Q  V  P  G  V  Q  H  A  T  V  V  A  P  R  M  D  A  S  L  E  V  G  T  F  P  R  L  T  T  G  S  I  M  T  S  D  Q  H  E  L  F  T  K  F  L  K  L  K  P  P  V  F  K  G  A  K  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  D  I  V  E  R  F  G  V  D  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  Y  V  E  C  Q  P  A  Q  A  P  P  M  T  W  E  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  R  R  D  E  F  L  S  L  *  Q  G  R  M  S  V  A  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  *  E  R  I  R  R  F  V  K  G  L  R  L  D  L  Q  I  P  V  T  G  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153O03.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21811" stop="22314"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MINQVLTYLSGLSDRGQTPPVFLVPAPQVPGVQHATVVAPRMDASLEVGTFPRLTTGSIMTSDQHELFTKFLKLKPPVFKGAKSEDAYDFLVDCHELLHKMDIVERFGVDFVTYQFQGNAKMWWRSYVECQPAQAPPMTWESFSSLFMEKYIPRTLRDRRRDEFLSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="38426" PGL_stop="30845"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34335" e_stop="32215"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="34335" e_stop="32215" e_length="2121"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34335" stop="33574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34335" stop="33675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33725" stop="33167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33565" stop="32868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33004" stop="32286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33001" stop="32339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32646" stop="32215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAAAGCTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCTAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACTACTGAAACCGACTCAATCGAAGGCACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACAACCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATATGCACCGGATTGGAAGCGTTGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCTAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCTACAAAGTTCACCAAAAAAGACCTATACACCTTTTCAACTACCACAGATTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAGGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTAACTTGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTTGGCCGTTTTGGTTACCACCATTTCCTTGACCACCACGTCCTCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTTCGATCTCCCCACATCCATAACACTTTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCAATGTCGGGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCACTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATTCGCTCTTGTGGACTGAAACACAGTTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCATTACCTTGAAACTGATAACTTACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCCGCACCCTTGAATACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGTAGAAAACACTGGGGTGTCTGGCCCTGATCATATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCAGTTTCCCCATCGTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGCGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACTACCTCTACCATGGCCCCTTGCCGCTGTTCTTC</gDNA_template>
            <first_frame> R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  I  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  Q  P  L  L  T  I  F  L  A  R  R  K  E  M  I  C  T  G  L  E  A  L  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  K  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  T  C  C  D  V  V  A  P  V  C  P  S  P  W  P  F  W  L  P  P  F  P  *  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  T  F  G  G  L  *  L  C  F  G  Q  Y  L  L  I  C  S  I  S  P  H  P  *  H  F  L  G  S  C  I  G  L  S  E  K  C  *  P  V  G  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  L  P  E  P  C  P  L  V  *  A  P  L  N  S  P  P  F  R  N  L  F  D  V  N  V  G  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  T  I  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  R  I  R  S  C  G  L  K  H  S  W  V  A  Y  R  D  N  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  H  S  I  C  D  R  H  H  I  L  A  L  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  N  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  G  T  S  M  R  G  A  I  V  A  A  C  C  T  S  G  A  *  G  A  G  V  E  N  T  G  V  S  G  P  D  H  I  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  S  A  L  V  Q  F  P  H  R  P  L  L  L  L  L  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  *  A  L  V  L  F  P  *  R  T  S  S  H  Y  L  Y  H  G  P  L  P  L  F  F </first_frame>
            <second_frame>  E  S  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  I  T  L  E  V  V  P  L  T  L  L  T  L  R  E  P  F  Y  K  G  V  *  K  W  G  V  C  P  V  L  D  R  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  G  L  L  K  P  T  Q  S  K  A  L  G  *  C  H  P  *  D  V  P  R  K  L  N  N  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  R  C  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  L  E  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  L  Q  S  S  P  K  K  T  Y  T  P  F  Q  L  P  Q  I  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  R  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  S  S  V  R  C  P  *  L  V  V  M  *  W  L  Q  F  A  H  H  L  G  R  F  G  Y  H  H  F  L  D  H  H  V  L  Q  N  N  G  L  C  H  D  H  L  Y  L  *  H  L  E  V  C  N  S  V  L  D  N  I  S  *  Y  V  R  S  P  H  I  H  N  T  F  W  V  H  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  L  V  G  L  S  N  F  P  N  P  V  L  *  C  K  H  H  *  T  H  L  P  F  E  T  F  L  M  S  M  S  G  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  P  L  G  R  I  L  P  L  P  L  S  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  G  E  F  A  L  V  D  *  N  T  V  G  W  H  T  G  I  M  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  F  G  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  Q  Y  V  T  A  T  T  F  W  H  Y  L  E  T  D  N  L  R  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  R  K  H  P  Q  I  P  H  P  *  I  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  F  P  M  E  H  P  C  G  E  P  *  *  P  H  V  V  P  P  E  P  E  V  L  V  *  K  T  L  G  C  L  A  L  I  I  *  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  Q  S  L  I  L  H  L  F  S  F  P  I  V  P  F  S  Y  Y  F  L  S  R  W  R  S  H  C  P  S  I  R  W  A  R  R  S  S  S  S  P  R  G  R  P  P  T  T  S  T  M  A  P  C  R  C  S   </second_frame>
            <third_frame>   K  A  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  K  A  F  V  Q  *  L  L  K  L  C  L  *  L  S  *  L  C  G  S  H  S  I  R  G  Y  R  N  G  A  C  A  R  F  *  I  D  T  E  V  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  D  Y  *  N  R  L  N  R  R  H  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  T  F  T  N  H  F  L  S  T  K  K  G  D  D  M  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  *  N  Y  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  Y  K  V  H  Q  K  R  P  I  H  L  F  N  Y  H  R  F  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  G  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  R  L  S  V  A  P  N  L  L  *  C  S  G  S  S  L  P  I  T  L  A  V  L  V  T  T  I  S  L  T  T  T  S  S  R  I  T  A  S  A  M  T  T  S  T  S  N  I  W  R  S  V  T  L  F  W  T  I  S  L  N  M  F  D  L  P  T  S  I  T  L  S  G  F  M  H  R  S  L  R  E  V  L  T  G  R  R  W  T  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  R  T  L  S  S  S  V  S  T  I  K  L  T  S  L  S  K  P  F  *  C  Q  C  R  G  E  V  V  W  L  H  S  F  H  F  Y  H  K  V  Y  H  L  L  E  G  F  C  R  C  H  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  P  A  N  S  L  L  W  T  E  T  Q  L  G  G  I  P  G  *  C  T  K  L  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  S  G  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  I  T  L  K  L  I  T  Y  E  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  V  S  I  L  R  F  R  T  L  E  Y  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  F  Q  W  N  I  H  A  G  S  H  S  S  R  M  L  Y  L  R  S  L  R  C  W  C  R  K  H  W  G  V  W  P  *  S  Y  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  P  S  F  C  T  C  S  V  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  L  P  L  P  W  P  L  A  A  V  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153O03.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34197" stop="33802"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAGNTSRNSRTTETDSIEGTWVVSSLRCAKKAKQPLLTIFLARRKEMICTGLEALSPSHTNGSVPGLANVTVLALQSKIANCGESQVIPRITSKSSISKITKST*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153O03.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33183" stop="32794"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APLNSPPFRNLFDVNVGVKSSGFTPSTSITKSTTSWKDFAVATICKAEIRNSDLNPFTNRRIRSCGLKHSWVAYRDNARNLASYALTDILPCSRLKNSSLFLSLKVRGIYFSINKLENEAQVIGGASVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153O03.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33493" stop="33239"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITLAVLVTTISLTTTSSRITASAMTTSTSNIWRSVTLFWTISLNMFDLPTSITLSGFMHRSLREVLTGRRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153O03.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32692" stop="32447"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMTVNQKIVSILRFRTLEYWRFQFQELTEKFMLIICHYRPSSQTWKRAYFQWNIHAGSHSSRMLYLRSLRCWCRKHWGVWP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153O03.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32438" stop="32217"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAKISQNLIDHLWGRLGWQSLILHLFSFPIVPFSYYFLSRWRSHCPSIRWARRSSSSPRGRPPTTSTMAPCRCS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="36403" e_stop="36227"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="36403" e_stop="36227" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36403" stop="36227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATCTTCCAACACTTGAATCGTCCTTTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  R  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  L  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  G  S  Y  P  N  D  H  Q  T  L  S  H  T  H  E  A  Y  L  P  T  L  E  S  S  F  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  T  T  K  L  Y  H  T  R  T  K  H  I  F  Q  H  L  N  R  P  F  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0153O03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="38426" e_stop="38193"/>
            <exon e_start="38114" e_stop="38054"/>
            <exon e_start="31064" e_stop="30845"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.932"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.967"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="38426" e_stop="38193" e_length="234"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="38192" i_stop="38115" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="0.967">
            <gDNA_exon_boundary e_start="38114" e_stop="38054" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="38053" i_stop="31065" i_length="6989"/>
          </intron>
          <exon e_serial="3" e_score="0.977">
            <gDNA_exon_boundary e_start="31064" e_stop="30845" e_length="220"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38426" stop="38193"/>
              <exon start="38114" stop="38054"/>
              <exon start="31064" stop="30845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTATGTATTAAGCAATATCATAAAATCAATTAATATCCTTAGCATGCAGCATTTACAGTTACCATAACCCTTGGTTACAACACCAAGCACATCAATGAGGACTCACACCTCCTCATCACACTCATTTGGGAATTTAGTTCATTAGATTGGATATATTAACATATTTCAAGATTCATTATCTTTATTCCCCTCGTGTCGGTACATGACACTCCGCTCCTCAATATACTATCCTG : GTACCGGAACGTGGTACCCGATCCATATTCTATCCTGGTGTCAGAACGTGACACCCGATCC : ATATTCTATCCTGGTGTCAGAACGTGACACCCGATCCATATCCTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCTTGGTGTCGGAACGTGACACCCGATCTATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACCACTTTCGTTCATCAAGCCTTCTTTTATACCAAGGCATCATCATTAACAAAGTAGATTAGG</gDNA_template>
            <first_frame> S  M  Y  *  A  I  S  *  N  Q  L  I  S  L  A  C  S  I  Y  S  Y  H  N  P  W  L  Q  H  Q  A  H  Q  *  G  L  T  P  P  H  H  T  H  L  G  I  *  F  I  R  L  D  I  L  T  Y  F  K  I  H  Y  L  Y  S  P  R  V  G  T  *  H  S  A  P  Q  Y  T  I  L  :  V  P  E  R  G  T  R  S  I  F  Y  P  G  V  R  T  *  H  P  I   : H  I  L  S  W  C  Q  N  V  T  P  D  P  Y  P  I  L  V  P  E  R  G  T  R  S  I  F  Y  L  G  V  G  T  *  H  P  I  Y  I  L  S  W  Y  R  N  V  A  P  D  P  L  I  S  P  L  S  F  I  K  P  S  F  I  P  R  H  H  H  *  Q  S  R  L   </first_frame>
            <second_frame>  V  C  I  K  Q  Y  H  K  I  N  *  Y  P  *  H  A  A  F  T  V  T  I  T  L  G  Y  N  T  K  H  I  N  E  D  S  H  L  L  I  T  L  I  W  E  F  S  S  L  D  W  I  Y  *  H  I  S  R  F  I  I  F  I  P  L  V  S  V  H  D  T  P  L  L  N  I  L  S  W :   Y  R  N  V  V  P  D  P  Y  S  I  L  V  S  E  R  D  T  R  S  :  I  F  Y  P  G  V  R  T  *  H  P  I  H  I  L  S  W  Y  R  N  V  A  P  D  P  Y  S  I  L  V  S  E  R  D  T  R  S  I  F  Y  P  G  T  G  T  W  H  P  I  P  *  S  H  H  F  R  S  S  S  L  L  L  Y  Q  G  I  I  I  N  K  V  D  *  </second_frame>
            <third_frame>   Y  V  L  S  N  I  I  K  S  I  N  I  L  S  M  Q  H  L  Q  L  P  *  P  L  V  T  T  P  S  T  S  M  R  T  H  T  S  S  S  H  S  F  G  N  L  V  H  *  I  G  Y  I  N  I  F  Q  D  S  L  S  L  F  P  S  C  R  Y  M  T  L  R  S  S  I  Y  Y  P   : G  T  G  T  W  Y  P  I  H  I  L  S  W  C  Q  N  V  T  P  D  P :   Y  S  I  L  V  S  E  R  D  T  R  S  I  S  Y  P  G  T  G  T  W  H  P  I  H  I  L  S  W  C  R  N  V  T  P  D  L  Y  S  I  L  V  P  E  R  G  T  R  S  P  N  L  T  T  F  V  H  Q  A  F  F  Y  T  K  A  S  S  L  T  K  *  I  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153O03.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38280" stop="38193"/>
                    <exon start="38114" stop="38054"/>
                    <exon start="31064" stop="30851"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGYINIFQDSLSLFPSCRYMTLRSSIYYPGTGTWYPIHILSWCQNVTPDPYSILVSERDTRSISYPGTGTWHPIHILSWCRNVTPDLYSILVPERGTRSPNLTTFVHQAFFYTKASSLTK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="30845" PGL_stop="32208"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30845" e_stop="31098"/>
            <exon e_start="31149" e_stop="32208"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.961"/>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="30845" e_stop="31098" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="31099" i_stop="31148" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.903">
            <gDNA_exon_boundary e_start="31149" e_stop="32208" e_length="1060"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30845" stop="31098"/>
              <exon start="31149" stop="31400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31256" stop="31490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31416" stop="32150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31416" stop="32075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31496" stop="32162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31923" stop="32208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATAGATCGGGTGTCACGTTCCGACACCAAGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGGATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTA : AGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGAGAATAAAGATAATGAATCTTGAAATATGTTAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTGTGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAATTGATTTTATGATATTGCTTAATACATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTTCCGTCATCTTCAACTCAGCAGTGATTCTAGCCAGTCTTCGTCATACCGGATATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGGTCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGAATACTCTTAGTTTAGTCATTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTCTTTATTTAATGATTTTAAGTCTTCCGCATTACTTTCTGGTTATATTATATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGTGGCCTGGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTTCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTCTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTAGTATCTGACCATCTTCACTCTCTTTCACAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAATACCGGCCAGACAAGAAACAACTGAGCCAACCACTGGGGCTGTGG</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  G  I  K  E  G  L  M  N  E  S  G  E  I  R  G  S  G  A  T  F  R  Y  Q  D  R  I  *  I  G  C  H  V  P  T  P  R  *  N  M  D  R  V  P  R  S  G  T  R  I  G  Y  G  S  G  V  T  F  *  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  * :   V  S  R  S  D  T  R  I  V  Y  *  G  A  E  C  H  V  P  T  R  G  E  *  R  *  *  I  L  K  Y  V  N  I  S  N  L  M  N  *  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  N  *  F  Y  D  I  A  *  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  F  *  P  V  F  V  I  P  D  I  Q  G  E  L  M  L  L  A  W  T  G  S  S  S  S  S  L  D  A  L  N  F  R  H  G  L  A  S  Y  V  F  L  A  F  R  I  L  L  V  *  S  F  D  R  R  C  S  C  D  D  D  F  Q  I  L  G  E  *  *  M  L  N  F  R  S  *  *  I  G  L  Y  L  M  I  L  S  L  P  H  Y  F  L  V  I  L  Y  *  N  V  K  V  *  I  G  W  F  A  H  I  G  G  *  V  W  V  P  V  V  A  W  I  W  V  V  T  N  L  V  S  E  H  *  V  R  W  S  H  H  T  R  T  G  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  F  L  R  G  Y  K  T  L  G  K  F  H  S  L  I  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  *  Y  L  T  I  F  T  L  F  H  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  Y  R  P  D  K  K  Q  L  S  Q  P  L  G  L  W </first_frame>
            <second_frame>  L  I  Y  F  V  N  D  D  A  L  V  *  K  K  A  *  *  T  K  V  V  R  L  G  D  R  V  P  R  S  G  T  R  I  E  Y  R  S  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  D  M  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  S   : K  C  H  V  P  T  P  G  *  Y  I  E  E  R  S  V  T  Y  R  H  E  E  N  K  D  N  E  S  *  N  M  L  I  Y  P  I  *  *  T  K  F  P  N  E  C  D  E  E  V  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  I  D  F  M  I  L  L  N  T  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  I  C  G  V  Q  Q  T  F  R  H  L  Q  L  S  S  D  S  S  Q  S  S  S  Y  R  I  F  R  V  S  *  C  F  *  L  G  L  G  L  L  L  Q  V  L  M  P  *  T  S  G  M  D  *  L  L  M  Y  F  *  L  L  E  Y  S  *  F  S  H  L  I  V  D  V  L  V  M  M  T  S  R  F  W  G  N  N  R  C  *  I  L  E  V  N  E  L  V  F  I  *  *  F  *  V  F  R  I  T  F  W  L  Y  Y  I  E  M  L  R  F  R  L  V  G  S  L  T  *  E  G  K  C  G  C  Q  S  W  P  G  F  G  S  *  Q  T  W  Y  Q  S  I  R  F  V  G  L  I  T  Q  E  Q  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  S  *  E  A  I  R  L  *  E  N  F  T  L  S  F  F  L  S  C  Y  Y  L  S  P  I  G  I  *  A  I  R  I  S  I  *  P  S  S  L  S  F  T  D  G  *  N  *  S  N  D  Y  A  N  T  N  T  G  Q  T  R  N  N  *  A  N  H  W  G  C   </second_frame>
            <third_frame>   *  S  T  L  L  M  M  M  P  W  Y  K  R  R  L  D  E  R  K  W  *  D  *  G  I  G  C  H  V  P  V  P  G  *  N  I  D  R  V  S  R  S  D  T  K  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  V  L  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  V  :  S  V  T  F  R  H  Q  D  S  I  L  R  S  G  V  S  R  T  D  T  R  R  I  K  I  M  N  L  E  I  C  *  Y  I  Q  S  N  E  L  N  S  Q  M  S  V  M  R  R  C  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  H  T  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  L  L  F  V  E  C  S  K  R  S  V  I  F  N  S  A  V  I  L  A  S  L  R  H  T  G  Y  S  G  *  A  N  A  S  S  L  D  W  V  F  F  F  K  S  *  C  L  E  L  P  A  W  T  S  F  L  C  I  F  S  F  *  N  T  L  S  L  V  I  *  S  *  M  F  L  *  *  *  L  P  D  F  G  G  I  I  D  V  E  F  *  K  L  M  N  W  S  L  F  N  D  F  K  S  S  A  L  L  S  G  Y  I  I  L  K  C  *  G  L  D  W  L  V  R  S  H  R  R  V  S  V  G  A  S  R  G  L  D  L  G  R  D  K  L  G  I  R  A  L  G  S  L  V  S  S  H  K  N  R  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  L  E  R  L  *  D  F  R  K  I  S  L  S  H  S  F  F  R  A  T  T  *  V  Q  L  V  S  R  R  Y  E  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  P  T  P  I  P  A  R  Q  E  T  T  E  P  T  T  G  A  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0153O03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="32282" PGL_stop="32834"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32282" e_stop="32834"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="32282" e_stop="32834" e_length="553"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32282" stop="32834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGACGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATATGATCAGGGCCAGACACCCCAGTGTTTTCTACACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTATTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTAAGTTATCAGTTTCAAGGTAATGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> A  *  P  I  *  Y  *  G  S  D  S  S  T  D  *  G  S  N  K  R  R  G  R  W  G  N  *  T  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  R  V  I  *  S  G  P  D  T  P  V  F  S  T  P  A  P  Q  A  P  E  V  Q  H  A  A  T  M  A  P  R  M  D  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  D  D  G  E  T  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  Y  D  Q  G  Q  T  P  Q  C  F  L  H  Q  H  L  R  L  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  F  H  W  K  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  Y  S  R  V  R  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  V  M  P  K  C  G  G  G  H  I  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S </second_frame>
            <third_frame>   L  A  H  L  I  L  G  Q  *  L  L  H  R  L  R  K  *  *  E  K  G  T  M  G  K  L  N  K  C  R  M  R  D  C  H  P  N  L  P  Q  R  *  S  I  R  F  W  L  I  L  A  G  Y  M  I  R  A  R  H  P  S  V  F  Y  T  S  T  S  G  S  G  G  T  T  C  G  Y  Y  G  S  P  H  G  C  S  I  G  N  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  I  Q  G  C  G  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  K  L  S  V  S  R  *  C  Q  N  V  V  A  V  T  Y  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153O03.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32447" stop="32833"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGPDTPVFSTPAPQAPEVQHAATMAPRMDVPLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVSYQFQGNAKMWWRSHIECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="38282" PGL_stop="38516"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38282" e_stop="38516"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="38282" e_stop="38516" e_length="235"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38282" stop="38516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATGAACTAAATTCCCAAATGAGTGTGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAATTGATTTTATGATATTGCTTAATACATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTATTTGTG</gDNA_template>
            <first_frame> *  *  T  K  F  P  N  E  C  D  E  E  V  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  I  D  F  M  I  L  L  N  T  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  I  C  </first_frame>
            <second_frame>  N  E  L  N  S  Q  M  S  V  M  R  R  C  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  H  T  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  L  L  F  V </second_frame>
            <third_frame>   M  N  *  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  N  *  F  Y  D  I  A  *  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0153O03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="54685" PGL_stop="55268"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54685" e_stop="55027"/>
            <exon e_start="55066" e_stop="55268"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.895"/>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.895">
            <gDNA_exon_boundary e_start="54685" e_stop="55027" e_length="343"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="55028" i_stop="55065" i_length="38"/>
          </intron>
          <exon e_serial="2" e_score="0.936">
            <gDNA_exon_boundary e_start="55066" e_stop="55268" e_length="203"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54685" stop="55027"/>
              <exon start="55066" stop="55268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243101" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCAACAACAACACTTAGACAAATTACATATCCTCAACAACAACACTTCAACAAATTACATATTCGCAATAACAAGCTCAATATTGATCAATCACAAGTTCCACAGAATGGTAATCATAAGATCAGCAAAACACGATATCAAGTTCACTAATGATAAATATGTGCAATACAATGGAATACAATGTCAAGTATAATGATGCATGTCTGACCTAGTGACATACACTCGCTGTCTCTCAGTCCGGGACCCATAGGGGACATATCTGTTCATGCATCTGTCGCGGAGCACGACATGACCCTCGATAATAGTAACCATCATGGCGCGCGATACGTCTCTCGAAATATA : GTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTCTTTCTCAATGCACATAACAATTGTCACAACCAATGCCTCATAATAATGCAGATGACACGTTCACACAAATAATGAGGAGATGACCATTTTCATAACATTGCAGAGTTCACAACCACACAAACATGAAATCACATCAACAATGA</gDNA_template>
            <first_frame> L  N  N  N  T  *  T  N  Y  I  S  S  T  T  T  L  Q  Q  I  T  Y  S  Q  *  Q  A  Q  Y  *  S  I  T  S  S  T  E  W  *  S  *  D  Q  Q  N  T  I  S  S  S  L  M  I  N  M  C  N  T  M  E  Y  N  V  K  Y  N  D  A  C  L  T  *  *  H  T  L  A  V  S  Q  S  G  T  H  R  G  H  I  C  S  C  I  C  R  G  A  R  H  D  P  R  *  *  *  P  S  W  R  A  I  R  L  S  K  Y   : S  I  H  R  G  A  R  Y  V  P  R  N  G  T  S  S  *  V  P  I  L  S  Q  C  T  *  Q  L  S  Q  P  M  P  H  N  N  A  D  D  T  F  T  Q  I  M  R  R  *  P  F  S  *  H  C  R  V  H  N  H  T  N  M  K  S  H  Q  Q  * </first_frame>
            <second_frame>  S  T  T  T  L  R  Q  I  T  Y  P  Q  Q  Q  H  F  N  K  L  H  I  R  N  N  K  L  N  I  D  Q  S  Q  V  P  Q  N  G  N  H  K  I  S  K  T  R  Y  Q  V  H  *  *  *  I  C  A  I  Q  W  N  T  M  S  S  I  M  M  H  V  *  P  S  D  I  H  S  L  S  L  S  P  G  P  I  G  D  I  S  V  H  A  S  V  A  E  H  D  M  T  L  D  N  S  N  H  H  G  A  R  Y  V  S  R  N  I  :  V  S  I  A  A  R  D  T  S  L  E  M  V  H  P  L  K  Y  P  F  F  L  N  A  H  N  N  C  H  N  Q  C  L  I  I  M  Q  M  T  R  S  H  K  *  *  G  D  D  H  F  H  N  I  A  E  F  T  T  T  Q  T  *  N  H  I  N  N   </second_frame>
            <third_frame>   Q  Q  Q  H  L  D  K  L  H  I  L  N  N  N  T  S  T  N  Y  I  F  A  I  T  S  S  I  L  I  N  H  K  F  H  R  M  V  I  I  R  S  A  K  H  D  I  K  F  T  N  D  K  Y  V  Q  Y  N  G  I  Q  C  Q  V  *  *  C  M  S  D  L  V  T  Y  T  R  C  L  S  V  R  D  P  *  G  T  Y  L  F  M  H  L  S  R  S  T  T  *  P  S  I  I  V  T  I  M  A  R  D  T  S  L  E  I  * :   Y  P  S  R  R  A  I  R  P  S  K  W  Y  I  L  L  S  T  H  S  F  S  M  H  I  T  I  V  T  T  N  A  S  *  *  C  R  *  H  V  H  T  N  N  E  E  M  T  I  F  I  T  L  Q  S  S  Q  P  H  K  H  E  I  T  S  T  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153O03.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54893" stop="55027"/>
                    <exon start="55066" stop="55197"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSDIHSLSLSPGPIGDISVHASVAEHDMTLDNSNHHGARYVSRNIVSIAARDTSLEMVHPLKYPFFLNAHNNCHNQCLIIMQMTRSHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="55412" PGL_stop="55018"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55412" e_stop="55018"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="55412" e_stop="55018" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55412" stop="55018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278592" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATATGTTTGGGAGTAACGGGATTGGTGATGGATTGACTTGCCCACATTGATTAATTCTAATAATGAAAAAAAGGGATAACAAAAGGCAATGTGATTAATTGTTTATGTGTGATGTGTTGAGAAAGGGTTGAACGCTTGTTGAATCATTGTTGATGTGATTTCATGTTTGTGTGGTTGTGAACTCTGCAATGTTATGAAAATGGTCATCTCCTCATTATTTGTGTGAACGTGTCATCTGCATTATTATGAGGCATTGGTTGTGACAATTGTTATGTGCATTGAGAAAGAATGGGTACTTAAGAGGATGTACCATTTCGAGGGACGTATCGCGCGCCGCGATGGATACTATATTTCGAGGGACATATCGCGCGTCGCGATGGATACTATATTTCGA</gDNA_template>
            <first_frame> Y  M  F  G  S  N  G  I  G  D  G  L  T  C  P  H  *  L  I  L  I  M  K  K  R  D  N  K  R  Q  C  D  *  L  F  M  C  D  V  L  R  K  G  *  T  L  V  E  S  L  L  M  *  F  H  V  C  V  V  V  N  S  A  M  L  *  K  W  S  S  P  H  Y  L  C  E  R  V  I  C  I  I  M  R  H  W  L  *  Q  L  L  C  A  L  R  K  N  G  Y  L  R  G  C  T  I  S  R  D  V  S  R  A  A  M  D  T  I  F  R  G  T  Y  R  A  S  R  W  I  L  Y  F   </first_frame>
            <second_frame>  I  C  L  G  V  T  G  L  V  M  D  *  L  A  H  I  D  *  F  *  *  *  K  K  G  I  T  K  G  N  V  I  N  C  L  C  V  M  C  *  E  R  V  E  R  L  L  N  H  C  *  C  D  F  M  F  V  W  L  *  T  L  Q  C  Y  E  N  G  H  L  L  I  I  C  V  N  V  S  S  A  L  L  *  G  I  G  C  D  N  C  Y  V  H  *  E  R  M  G  T  *  E  D  V  P  F  R  G  T  Y  R  A  P  R  W  I  L  Y  F  E  G  H  I  A  R  R  D  G  Y  Y  I  S  </second_frame>
            <third_frame>   Y  V  W  E  *  R  D  W  *  W  I  D  L  P  T  L  I  N  S  N  N  E  K  K  G  *  Q  K  A  M  *  L  I  V  Y  V  *  C  V  E  K  G  L  N  A  C  *  I  I  V  D  V  I  S  C  L  C  G  C  E  L  C  N  V  M  K  M  V  I  S  S  L  F  V  *  T  C  H  L  H  Y  Y  E  A  L  V  V  T  I  V  M  C  I  E  K  E  W  V  L  K  R  M  Y  H  F  E  G  R  I  A  R  R  D  G  Y  Y  I  S  R  D  I  S  R  V  A  M  D  T  I  F  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0153O03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="59124" PGL_stop="58788"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59124" e_stop="58788"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="59124" e_stop="58788" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59124" stop="58788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTACAAATAGAAAACAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATCTCATTAACAGTTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATGATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  Y  K  *  K  T  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  S  T  I  S  L  T  V  T  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  S  C  S  L  D  *  V  Y  *  H  L  S  R  F  M  I  F  I  S  L  V  S  V  R  D  T  P  L  P  H  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N  L  R  V  G  S  *  H  P  I  </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  T  N  R  K  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  A  L  S  H  *  Q  L  P  S  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  H  V  H  *  I  E  Y  I  N  I  F  Q  D  S  *  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  I  F  I  N  P  L  V  S  V  R  D  T  P  I  P  *  I  Y  V  S  V  R  D  T  R  S </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  Q  I  E  N  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  H  Y  L  I  N  S  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  H  D  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  P  K  S  T  C  R  F  V  T  P  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0153O03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="58798" PGL_stop="59276"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58798" e_stop="59276"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="58798" e_stop="59276" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58798" stop="59035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58799" stop="59276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATCATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAACTGTTAATGAGATAGTGCTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGTTTTCTATTTGTAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGTCATCGTCCTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGAAAATTCAGGGTAAGCTAATGCCTCTAGCTTGGACT</gDNA_template>
            <first_frame> S  R  T  D  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  H  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  D  S  A  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  C  F  L  F  V  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  Y  L  W  S  A  A  N  V  S  S  S  S  T  Q  Q  *  F  K  P  V  L  L  H  R  K  F  R  V  S  *  C  L  *  L  G   </first_frame>
            <second_frame>  H  E  P  T  R  R  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  D  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  T  V  N  E  I  V  L  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  V  F  Y  L  *  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  L  F  I  C  G  V  Q  Q  T  C  H  R  P  Q  L  N  S  N  S  S  Q  S  Y  Y  I  E  N  S  G  *  A  N  A  S  S  L  D  </second_frame>
            <third_frame>   T  N  R  H  V  D  L  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  S  *  I  L  K  D  V  N  I  L  N  L  M  N  M  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  L  M  R  *  C  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  F  S  I  C  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  F  V  E  C  S  K  R  V  I  V  L  N  S  T  V  I  Q  A  S  L  T  T  S  K  I  Q  G  K  L  M  P  L  A  W  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153O03.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59061" stop="59276"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYDITWYILFSICSWPMISTQYPCFVLTPTFMFSSCLFVECSKRVIVLNSTVIQASLTTSKIQGKLMPLAWT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="64687" PGL_stop="62393"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64687" e_stop="64540"/>
            <exon e_start="63398" e_stop="63127"/>
            <exon e_start="62947" e_stop="62744"/>
            <exon e_start="62643" e_stop="62393"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64687" e_stop="64540" e_length="148"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64539" i_stop="63399" i_length="1141"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63398" e_stop="63127" e_length="272"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63126" i_stop="62948" i_length="179"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62947" e_stop="62744" e_length="204"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="62743" i_stop="62644" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="62643" e_stop="62393" e_length="251"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64687" stop="64540"/>
              <exon start="63398" stop="63186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280221" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64681" stop="64540"/>
              <exon start="63398" stop="63127"/>
              <exon start="62947" stop="62744"/>
              <exon start="62643" stop="62498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64674" stop="64540"/>
              <exon start="63398" stop="63127"/>
              <exon start="62947" stop="62861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64672" stop="64540"/>
              <exon start="63398" stop="63127"/>
              <exon start="62947" stop="62765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64670" stop="64540"/>
              <exon start="63398" stop="63127"/>
              <exon start="62947" stop="62744"/>
              <exon start="62643" stop="62637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64670" stop="64540"/>
              <exon start="63398" stop="63185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64657" stop="64540"/>
              <exon start="63398" stop="63127"/>
              <exon start="62947" stop="62744"/>
              <exon start="62643" stop="62565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64657" stop="64540"/>
              <exon start="63398" stop="63127"/>
              <exon start="62947" stop="62765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64657" stop="64540"/>
              <exon start="63398" stop="63127"/>
              <exon start="62947" stop="62864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64657" stop="64540"/>
              <exon start="63398" stop="63127"/>
              <exon start="62947" stop="62881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64649" stop="64540"/>
              <exon start="63398" stop="63127"/>
              <exon start="62947" stop="62845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64649" stop="64540"/>
              <exon start="63398" stop="63127"/>
              <exon start="62947" stop="62845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64649" stop="64540"/>
              <exon start="63398" stop="63127"/>
              <exon start="62947" stop="62863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64649" stop="64540"/>
              <exon start="63398" stop="63127"/>
              <exon start="62947" stop="62881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64648" stop="64540"/>
              <exon start="63398" stop="63127"/>
              <exon start="62947" stop="62744"/>
              <exon start="62643" stop="62546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64648" stop="64540"/>
              <exon start="63398" stop="63127"/>
              <exon start="62947" stop="62849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64646" stop="64540"/>
              <exon start="63398" stop="63127"/>
              <exon start="62947" stop="62814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64637" stop="64540"/>
              <exon start="63398" stop="63127"/>
              <exon start="62947" stop="62766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64633" stop="64540"/>
              <exon start="63398" stop="63127"/>
              <exon start="62947" stop="62744"/>
              <exon start="62643" stop="62575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63332" stop="63127"/>
              <exon start="62947" stop="62744"/>
              <exon start="62643" stop="62415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63301" stop="63127"/>
              <exon start="62947" stop="62895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63204" stop="63127"/>
              <exon start="62947" stop="62744"/>
              <exon start="62643" stop="62393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351583" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62813" stop="62744"/>
              <exon start="62643" stop="62400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217332" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCCAATCGACACCTCCTTAGACCTATCAGAAAAACAGGAAAAATGGAAGAAGCTTCAGTAGTAGCAGTGGACAACCAAAAGCCGCAGCAAGAGAAGCCTCACACTGATGTTTTGCTTTTCAATCGTTGGTCATATGATGATGTTCAG : ATTGCTGATATTTCTGTTGAGGATTACATAACTGCTACTGCTAACAAGCATCCTACATATACACCACACACAGCTGGGAGGTACCAAGCCAAGCGGTTTAGAAAGGCTCAATGCCCAATTGTGGAGAGGTTGACCAACTCACTGATGATGCACGGAAGGAACAACGGGAAGAAGTTGATGGCCGTTCGTATTATTAAGCATGCTATGGAAATTATCCATCTGTTGACTGACCTAAACCCAATCCAAGTGATTGTTGATGCTGTTATCAACAG : TGGACCAAGAGAAGATGCAACTCGTATAGGTTCTGCTGGTGTTGTGAGGCGACAAGCTGTTGATATTTCTCCACTCCGTCGTGTCAACCAAGCAATATATCTCCTCACAACTGGTGCACGTGAGAGTGCTTTCAGGAACATCAAGACCATAGCAGAATGCCTTGCAGATGAACTCATTAATGCTGCCAAGGGATCTTCCAACAG : CTATGCTATCAAGAAGAAGGATGAGATTGAGAGGGTTGCCAAGGCCAATCGTTGAGGGTGCAGTATGGATATTTACTATTGGTTGGACAGTTTTGCTTCGAAACGTTGTTTGTTCTTTATTTTTTAGTTGCTAGAAAGGCATTTTGGAACTAGTAACGAGTTTTTCTGTTTGGGAAACTTGGAGTACATTGGTATTGAATATTATATGGGGGAATTAGCAAAAAGCAAAATTGAGCTTGCTGTTATTCTCA</gDNA_template>
            <first_frame> L  Q  S  T  P  P  *  T  Y  Q  K  N  R  K  N  G  R  S  F  S  S  S  S  G  Q  P  K  A  A  A  R  E  A  S  H  *  C  F  A  F  Q  S  L  V  I  *  *  C  S   : D  C  *  Y  F  C  *  G  L  H  N  C  Y  C  *  Q  A  S  Y  I  Y  T  T  H  S  W  E  V  P  S  Q  A  V  *  K  G  S  M  P  N  C  G  E  V  D  Q  L  T  D  D  A  R  K  E  Q  R  E  E  V  D  G  R  S  Y  Y  *  A  C  Y  G  N  Y  P  S  V  D  *  P  K  P  N  P  S  D  C  *  C  C  Y  Q  Q  :  W  T  K  R  R  C  N  S  Y  R  F  C  W  C  C  E  A  T  S  C  *  Y  F  S  T  P  S  C  Q  P  S  N  I  S  P  H  N  W  C  T  *  E  C  F  Q  E  H  Q  D  H  S  R  M  P  C  R  *  T  H  *  C  C  Q  G  I  F  Q  Q  :  L  C  Y  Q  E  E  G  *  D  *  E  G  C  Q  G  Q  S  L  R  V  Q  Y  G  Y  L  L  L  V  G  Q  F  C  F  E  T  L  F  V  L  Y  F  L  V  A  R  K  A  F  W  N  *  *  R  V  F  L  F  G  K  L  G  V  H  W  Y  *  I  L  Y  G  G  I  S  K  K  Q  N  *  A  C  C  Y  S   </first_frame>
            <second_frame>  S  N  R  H  L  L  R  P  I  R  K  T  G  K  M  E  E  A  S  V  V  A  V  D  N  Q  K  P  Q  Q  E  K  P  H  T  D  V  L  L  F  N  R  W  S  Y  D  D  V  Q  :  I  A  D  I  S  V  E  D  Y  I  T  A  T  A  N  K  H  P  T  Y  T  P  H  T  A  G  R  Y  Q  A  K  R  F  R  K  A  Q  C  P  I  V  E  R  L  T  N  S  L  M  M  H  G  R  N  N  G  K  K  L  M  A  V  R  I  I  K  H  A  M  E  I  I  H  L  L  T  D  L  N  P  I  Q  V  I  V  D  A  V  I  N  S :   G  P  R  E  D  A  T  R  I  G  S  A  G  V  V  R  R  Q  A  V  D  I  S  P  L  R  R  V  N  Q  A  I  Y  L  L  T  T  G  A  R  E  S  A  F  R  N  I  K  T  I  A  E  C  L  A  D  E  L  I  N  A  A  K  G  S  S  N  S :   Y  A  I  K  K  K  D  E  I  E  R  V  A  K  A  N  R  *  G  C  S  M  D  I  Y  Y  W  L  D  S  F  A  S  K  R  C  L  F  F  I  F  *  L  L  E  R  H  F  G  T  S  N  E  F  F  C  L  G  N  L  E  Y  I  G  I  E  Y  Y  M  G  E  L  A  K  S  K  I  E  L  A  V  I  L  </second_frame>
            <third_frame>   P  I  D  T  S  L  D  L  S  E  K  Q  E  K  W  K  K  L  Q  *  *  Q  W  T  T  K  S  R  S  K  R  S  L  T  L  M  F  C  F  S  I  V  G  H  M  M  M  F  R :   L  L  I  F  L  L  R  I  T  *  L  L  L  L  T  S  I  L  H  I  H  H  T  Q  L  G  G  T  K  P  S  G  L  E  R  L  N  A  Q  L  W  R  G  *  P  T  H  *  *  C  T  E  G  T  T  G  R  S  *  W  P  F  V  L  L  S  M  L  W  K  L  S  I  C  *  L  T  *  T  Q  S  K  *  L  L  M  L  L  S  T   : V  D  Q  E  K  M  Q  L  V  *  V  L  L  V  L  *  G  D  K  L  L  I  F  L  H  S  V  V  S  T  K  Q  Y  I  S  S  Q  L  V  H  V  R  V  L  S  G  T  S  R  P  *  Q  N  A  L  Q  M  N  S  L  M  L  P  R  D  L  P  T   : A  M  L  S  R  R  R  M  R  L  R  G  L  P  R  P  I  V  E  G  A  V  W  I  F  T  I  G  W  T  V  L  L  R  N  V  V  C  S  L  F  F  S  C  *  K  G  I  L  E  L  V  T  S  F  S  V  W  E  T  W  S  T  L  V  L  N  I  I  W  G  N  *  Q  K  A  K  L  S  L  L  L  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153O03.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64686" stop="64540"/>
                    <exon start="63398" stop="63127"/>
                    <exon start="62947" stop="62744"/>
                    <exon start="62643" stop="62589"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNRHLLRPIRKTGKMEEASVVAVDNQKPQQEKPHTDVLLFNRWSYDDVQIADISVEDYITATANKHPTYTPHTAGRYQAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="66771" PGL_stop="68369"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66771" e_stop="67468"/>
            <exon e_start="67541" e_stop="68369"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="0.908"/>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="66771" e_stop="67468" e_length="698"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="67469" i_stop="67540" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="0.942">
            <gDNA_exon_boundary e_start="67541" e_stop="68369" e_length="829"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66771" stop="67468"/>
              <exon start="67541" stop="67637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66983" stop="67468"/>
              <exon start="67541" stop="67652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67088" stop="67468"/>
              <exon start="67541" stop="67776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419244" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67664" stop="68369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67813" stop="68369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395006" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67869" stop="68359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375520" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAACCTTTATGGTTTTCTACTCTGCTTGAGTTTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTCTGTGTAACGATTTGTTCTTTACTGTTAGTATTTCAAATACTTAAGTTATGTGCCATTTGTGACAGAAAAAAAGAAAAAATTACTAATTCAAATCAAACAAATGTTGGAACAGTAAGTGCTACAAGAGTTTGTGCTGCAATAACATCGGTTGCACATAATAATTCAAATGCTGCCTTAGCGCCGGCTGAGAAACCTGCAAAATTTTCTGGAGTCGACTTTAAGAGATGGCAGCAGAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGCCTGATGAACGATTCTTGGTAACACAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGCCTACAAGATGATCTGTACAATGTGTACAGCAATGTCAAAACCTTAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCAGAATGAAGAAATTCATCATGGCAAAATTTCTGGACTATAAGATGATAGACAGTAAGACTGTAGTCACCCAAGTTCAAGAACTGCAGGTCATAATCCATGATCTCCTTGCTGAAG : GATTGATTGTGAATGATGCCTTTCAAGTGGCTGCAATTATTGAAAACTTACCTCCATTGTTGAAGGACTTCAAAAACTACTTGAAACACAAACGCAAGGAGATGACTGTTGAAGATCTCATAGTAAGGTTGAGAATCGAAGATGATAATAAGGCTGCAGAAAAGAGGTCACATCGTAATTCAACAATATTTGGAGTAAATTTTGTTGAAGAAGATCCCACAAAATTAAAAAAAAGAAAGAAAACATCTGGTCCAAAAAGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTCAACTGTGGTAAACATGGTCATAGAGCTACTGAATGCCGGGGTCCAAAGTAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTTAAAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTAATCATATACTTCAACACTTACAGATGAAAAATTGTTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGAGTCTAATATGTTCCTGAATTGATTAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGGCTTCAAACTCGATGTAATTGCAGTTGATATGAATAAAGATTTTGATTCTTCTTA</gDNA_template>
            <first_frame> E  N  L  Y  G  F  L  L  C  L  S  F  L  K  F  I  R  L  T  I  K  R  T  *  K  L  Y  R  *  I  R  N  S  L  C  N  D  L  F  F  T  V  S  I  S  N  T  *  V  M  C  H  L  *  Q  K  K  R  K  N  Y  *  F  K  S  N  K  C  W  N  S  K  C  Y  K  S  L  C  C  N  N  I  G  C  T  *  *  F  K  C  C  L  S  A  G  *  E  T  C  K  I  F  W  S  R  L  *  E  M  A  A  E  D  V  L  L  S  H  Y  V  E  S  A  E  V  H  *  *  E  C  S  C  Y  V  R  *  N  S  A  *  *  T  I  L  G  N  T  S  M  D  T  L  R  F  F  V  *  K  L  Y  F  E  W  P  T  R  *  S  V  Q  C  V  Q  Q  C  Q  N  L  K  R  T  L  G  C  F  R  K  E  V  Q  N  R  R  C  Q  N  E  E  I  H  H  G  K  I  S  G  L  *  D  D  R  Q  *  D  C  S  H  P  S  S  R  T  A  G  H  N  P  *  S  P  C  *  R :   I  D  C  E  *  C  L  S  S  G  C  N  Y  *  K  L  T  S  I  V  E  G  L  Q  K  L  L  E  T  Q  T  Q  G  D  D  C  *  R  S  H  S  K  V  E  N  R  R  *  *  *  G  C  R  K  E  V  T  S  *  F  N  N  I  W  S  K  F  C  *  R  R  S  H  K  I  K  K  K  K  E  N  I  W  S  K  K  Q  S  S  *  E  E  I  Q  W  K  L  L  Q  L  W  *  T  W  S  *  S  Y  *  M  P  G  S  K  V  G  Q  E  K  E  G  S  S  K  L  G  *  I  Q  R  R  N  G  R  S  L  C  N  A  F  K  M  *  L  G  W  K  S  K  R  M  V  D  R  F  W  C  L  M  P  C  L  C  Q  Q  R  I  I  L  I  I  Y  F  N  T  Y  R  *  K  I  V  Y  G  K  L  R  C  C  K  G  G  R  N  W  Q  S  P  I  K  D  D  I  R  Q  G  G  D  F  E  *  S  L  I  C  S  *  I  D  *  E  F  S  F  N  S  S  S  D  Q  E  W  I  *  M  C  I  C  F  *  *  S  S  S  K  Q  K  *  Y  V  C  R  K  R  L  P  *  *  W  L  Q  T  R  C  N  C  S  *  Y  E  *  R  F  *  F  F  L </first_frame>
            <second_frame>  K  T  F  M  V  F  Y  S  A  *  V  F  *  N  S  F  D  *  R  L  K  E  H  K  N  F  I  V  K  S  E  T  V  C  V  T  I  C  S  L  L  L  V  F  Q  I  L  K  L  C  A  I  C  D  R  K  K  E  K  I  T  N  S  N  Q  T  N  V  G  T  V  S  A  T  R  V  C  A  A  I  T  S  V  A  H  N  N  S  N  A  A  L  A  P  A  E  K  P  A  K  F  S  G  V  D  F  K  R  W  Q  Q  K  M  F  F  Y  L  T  T  L  S  L  Q  K  F  I  N  E  N  V  P  V  M  S  D  E  T  P  P  D  E  R  F  L  V  T  Q  A  W  T  H  S  D  F  L  C  K  N  Y  I  L  S  G  L  Q  D  D  L  Y  N  V  Y  S  N  V  K  T  L  K  E  L  W  D  A  L  E  K  K  Y  K  T  E  D  A  R  M  K  K  F  I  M  A  K  F  L  D  Y  K  M  I  D  S  K  T  V  V  T  Q  V  Q  E  L  Q  V  I  I  H  D  L  L  A  E   : G  L  I  V  N  D  A  F  Q  V  A  A  I  I  E  N  L  P  P  L  L  K  D  F  K  N  Y  L  K  H  K  R  K  E  M  T  V  E  D  L  I  V  R  L  R  I  E  D  D  N  K  A  A  E  K  R  S  H  R  N  S  T  I  F  G  V  N  F  V  E  E  D  P  T  K  L  K  K  R  K  K  T  S  G  P  K  S  N  P  P  K  K  K  F  N  G  N  C  F  N  C  G  K  H  G  H  R  A  T  E  C  R  G  P  K  *  D  K  K  K  K  D  Q  A  N  L  A  E  S  K  G  E  M  D  D  L  C  A  M  L  L  K  C  N  L  V  G  N  P  R  E  W  W  I  D  S  G  A  S  C  H  V  C  A  N  K  E  L  F  *  S  Y  T  S  T  L  T  D  E  K  L  F  M  A  N  S  A  V  A  K  V  E  G  T  G  K  V  L  L  K  M  T  S  G  K  V  V  T  L  N  R  V  *  Y  V  P  E  L  I  K  N  L  V  S  I  P  V  L  T  K  N  G  F  K  C  V  F  V  S  D  K  V  V  V  S  K  N  D  M  Y  V  G  K  G  Y  L  S  D  G  F  K  L  D  V  I  A  V  D  M  N  K  D  F  D  S  S   </second_frame>
            <third_frame>   K  P  L  W  F  S  T  L  L  E  F  F  K  I  H  S  I  N  D  *  K  N  I  K  T  L  S  L  N  Q  K  Q  S  V  *  R  F  V  L  Y  C  *  Y  F  K  Y  L  S  Y  V  P  F  V  T  E  K  K  K  K  L  L  I  Q  I  K  Q  M  L  E  Q  *  V  L  Q  E  F  V  L  Q  *  H  R  L  H  I  I  I  Q  M  L  P  *  R  R  L  R  N  L  Q  N  F  L  E  S  T  L  R  D  G  S  R  R  C  S  S  I  S  L  R  *  V  C  R  S  S  L  M  R  M  F  L  L  C  Q  M  K  L  R  L  M  N  D  S  W  *  H  K  H  G  H  T  Q  I  F  C  V  K  I  I  F  *  V  A  Y  K  M  I  C  T  M  C  T  A  M  S  K  P  *  K  N  S  G  M  L  *  K  R  S  T  K  Q  K  M  P  E  *  R  N  S  S  W  Q  N  F  W  T  I  R  *  *  T  V  R  L  *  S  P  K  F  K  N  C  R  S  *  S  M  I  S  L  L  K  :  D  *  L  *  M  M  P  F  K  W  L  Q  L  L  K  T  Y  L  H  C  *  R  T  S  K  T  T  *  N  T  N  A  R  R  *  L  L  K  I  S  *  *  G  *  E  S  K  M  I  I  R  L  Q  K  R  G  H  I  V  I  Q  Q  Y  L  E  *  I  L  L  K  K  I  P  Q  N  *  K  K  E  R  K  H  L  V  Q  K  A  I  L  L  R  R  N  S  M  E  T  A  S  T  V  V  N  M  V  I  E  L  L  N  A  G  V  Q  S  R  T  R  K  R  R  I  K  Q  T  W  L  N  P  K  E  K  W  T  I  S  V  Q  C  F  *  N  V  T  W  L  E  I  Q  E  N  G  G  *  I  L  V  P  H  A  M  F  V  P  T  K  N  Y  F  N  H  I  L  Q  H  L  Q  M  K  N  C  L  W  Q  T  P  L  L  Q  R  W  K  E  L  A  K  S  Y  *  R  *  H  Q  A  R  W  *  L  *  I  E  S  N  M  F  L  N  *  L  R  I  *  F  Q  F  Q  F  *  P  R  M  D  L  N  V  Y  L  F  L  I  K  *  *  *  A  K  M  I  C  M  *  E  K  A  T  L  V  M  A  S  N  S  M  *  L  Q  L  I  *  I  K  I  L  I  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153O03.2" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66826" stop="67468"/>
                    <exon start="67541" stop="67887"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>987</number_coding_nucleotides>
                  <number_encoded_amino_acids>329</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLKEHKNFIVKSETVCVTICSLLLVFQILKLCAICDRKKEKITNSNQTNVGTVSATRVCAAITSVAHNNSNAALAPAEKPAKFSGVDFKRWQQKMFFYLTTLSLQKFINENVPVMSDETPPDERFLVTQAWTHSDFLCKNYILSGLQDDLYNVYSNVKTLKELWDALEKKYKTEDARMKKFIMAKFLDYKMIDSKTVVTQVQELQVIIHDLLAEGLIVNDAFQVAAIIENLPPLLKDFKNYLKHKRKEMTVEDLIVRLRIEDDNKAAEKRSHRNSTIFGVNFVEEDPTKLKKRKKTSGPKSNPPKKKFNGNCFNCGKHGHRATECRGPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="68762" PGL_stop="67837"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68762" e_stop="68737"/>
            <exon e_start="68369" e_stop="67837"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.875"/>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.875">
            <gDNA_exon_boundary e_start="68762" e_stop="68737" e_length="26"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="68736" i_stop="68370" i_length="367"/>
          </intron>
          <exon e_serial="2" e_score="0.925">
            <gDNA_exon_boundary e_start="68369" e_stop="67837" e_length="533"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68762" stop="68737"/>
              <exon start="68369" stop="67837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250407" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNATTTTTTT : TAAGAAGAATCAAAATCTTTATTCATATCAACTGCAATTACATCGAGTTTGAAGCCATCACTAAGGTAGCCTTTTCCTACATACATATCATTTTTGCTTACTACTACTTTATCAGAAACAAATACACATTTAAATCCATTCTTGGTCAGAACTGGAATTGAAACTAAATTCTTAATCAATTCAGGAACATATTAGACTCTATTCAAAGTCACCACCTTGCCTGATGTCATCTTTAATAGGACTTTGCCAGTTCCTTCCACCTTTGCAACAGCGGAGTTTGCCATAAACAATTTTTCATCTGTAAGTGTTGAAGTATATGATTAAAATAATTCTTTGTTGGCACAAACATGGCATGAGGCACCAGAATCTATCCACCATTCTCTTGGATTTCCAACCAAGTTACATTTTAAAAGCATTGCACAGAGATCGTCCATTTCTCCTTTGGATTCAGCCAAGTTTGCTTGATCCTTCTTTTTCTTGTCCTACTTTGGACCCCGGCATTCAGTAGCTCTATGACCATGTTTACCACAGTT</gDNA_template>
            <first_frame> F  F  F  F  F  F  I  F  F :   K  K  N  Q  N  L  Y  S  Y  Q  L  Q  L  H  R  V  *  S  H  H  *  G  S  L  F  L  H  T  Y  H  F  C  L  L  L  L  Y  Q  K  Q  I  H  I  *  I  H  S  W  S  E  L  E  L  K  L  N  S  *  S  I  Q  E  H  I  R  L  Y  S  K  S  P  P  C  L  M  S  S  L  I  G  L  C  Q  F  L  P  P  L  Q  Q  R  S  L  P  *  T  I  F  H  L  *  V  L  K  Y  M  I  K  I  I  L  C  W  H  K  H  G  M  R  H  Q  N  L  S  T  I  L  L  D  F  Q  P  S  Y  I  L  K  A  L  H  R  D  R  P  F  L  L  W  I  Q  P  S  L  L  D  P  S  F  S  C  P  T  L  D  P  G  I  Q  *  L  Y  D  H  V  Y  H  S  </first_frame>
            <second_frame>  F  F  F  F  F  L  F  F   : L  R  R  I  K  I  F  I  H  I  N  C  N  Y  I  E  F  E  A  I  T  K  V  A  F  S  Y  I  H  I  I  F  A  Y  Y  Y  F  I  R  N  K  Y  T  F  K  S  I  L  G  Q  N  W  N  *  N  *  I  L  N  Q  F  R  N  I  L  D  S  I  Q  S  H  H  L  A  *  C  H  L  *  *  D  F  A  S  S  F  H  L  C  N  S  G  V  C  H  K  Q  F  F  I  C  K  C  *  S  I  *  L  K  *  F  F  V  G  T  N  M  A  *  G  T  R  I  Y  P  P  F  S  W  I  S  N  Q  V  T  F  *  K  H  C  T  E  I  V  H  F  S  F  G  F  S  Q  V  C  L  I  L  L  F  L  V  L  L  W  T  P  A  F  S  S  S  M  T  M  F  T  T  V </second_frame>
            <third_frame>   F  F  F  F  F  Y  F  F  :  *  E  E  S  K  S  L  F  I  S  T  A  I  T  S  S  L  K  P  S  L  R  *  P  F  P  T  Y  I  S  F  L  L  T  T  T  L  S  E  T  N  T  H  L  N  P  F  L  V  R  T  G  I  E  T  K  F  L  I  N  S  G  T  Y  *  T  L  F  K  V  T  T  L  P  D  V  I  F  N  R  T  L  P  V  P  S  T  F  A  T  A  E  F  A  I  N  N  F  S  S  V  S  V  E  V  Y  D  *  N  N  S  L  L  A  Q  T  W  H  E  A  P  E  S  I  H  H  S  L  G  F  P  T  K  L  H  F  K  S  I  A  Q  R  S  S  I  S  P  L  D  S  A  K  F  A  *  S  F  F  F  L  S  Y  F  G  P  R  H  S  V  A  L  *  P  C  L  P  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153O03.2" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68065" stop="67862"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLKYMIKIILCWHKHGMRHQNLSTILLDFQPSYILKALHRDRPFLLWIQPSLLDPSFSCPTLDPGIQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="81847" PGL_stop="76554"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81847" e_stop="81426"/>
            <exon e_start="78138" e_stop="78024"/>
            <exon e_start="77923" e_stop="77842"/>
            <exon e_start="76605" e_stop="76554"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.980" e_score="0.998"/>
          <exon-intron don_prob="0.971" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="81847" e_stop="81426" e_length="422"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.980">
            <gDNA_intron_boundary i_start="81425" i_stop="78139" i_length="3287"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78138" e_stop="78024" e_length="115"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.967">
            <gDNA_intron_boundary i_start="78023" i_stop="77924" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77923" e_stop="77842" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.927" acc_prob="0.985">
            <gDNA_intron_boundary i_start="77841" i_stop="76606" i_length="1236"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76605" e_stop="76554" e_length="52"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81847" stop="81426"/>
              <exon start="78138" stop="78024"/>
              <exon start="77923" stop="77842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81847" stop="81426"/>
              <exon start="78138" stop="78024"/>
              <exon start="77923" stop="77898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81822" stop="81426"/>
              <exon start="78138" stop="78024"/>
              <exon start="77923" stop="77842"/>
              <exon start="76605" stop="76554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81788" stop="81426"/>
              <exon start="78138" stop="78024"/>
              <exon start="77923" stop="77842"/>
              <exon start="76605" stop="76578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81786" stop="81426"/>
              <exon start="78138" stop="78024"/>
              <exon start="77923" stop="77842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81705" stop="81426"/>
              <exon start="78138" stop="78024"/>
              <exon start="77923" stop="77842"/>
              <exon start="76605" stop="76579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250902" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGCTGCGCCTCATAATCACAACAGTAGCATCAAACTGCAATTGCAGCTATGGTGATGCTTATGAGCAGCACCTCATCCTTTTCTCTCCTCCCACTCAACTCAAACCCCTCTACATCTACCACTGCCGCTGTCGTCGGCAACTCACCCGCCGTTCTTCATAGTGTCAACTGTTGTACAGATTATCTATTTAGGATCGTTTCTGGCCATCGGATAAGACAAGTGGCTGTACGGAATAGCAATCGAACGGCTGAGGTTACTTCATCCTCTGATTCTGTAACTGATTTAGAGTCGGCGGCGAGTGTGGTGAGGAAATTCTATGCCGGAATAAATAGGCGGGATTTGGACTCTGTCGAAGAACTTATTGCTGAGGATTGTGTGTATGAAGACCTTGTATTTCCTCAACCTTTCGTTGGCCGTAAG : GCAATTCTAGATTTTTTCAAGAAGTTCACTGATTCAGTTGGTTCTGATCTGCAATTTGTTATTGACGATATATCCAAGGAGGATTCATCAGCTGTTGGAGTCACATGGCACTTGG : AATGGAGGGGAAGACCTTTTCCTTTTAGCAAAGGATGCAGCTTTTATCGATTGGAAGTGGTGAATGGCCAGATGAAAATACT : TTATGGCAGAGACAGTGTGGAACCTGCAGTCAAGCCGGGGGAGACGGCATTG</gDNA_template>
            <first_frame> L  A  A  P  H  N  H  N  S  S  I  K  L  Q  L  Q  L  W  *  C  L  *  A  A  P  H  P  F  L  S  S  H  S  T  Q  T  P  L  H  L  P  L  P  L  S  S  A  T  H  P  P  F  F  I  V  S  T  V  V  Q  I  I  Y  L  G  S  F  L  A  I  G  *  D  K  W  L  Y  G  I  A  I  E  R  L  R  L  L  H  P  L  I  L  *  L  I  *  S  R  R  R  V  W  *  G  N  S  M  P  E  *  I  G  G  I  W  T  L  S  K  N  L  L  L  R  I  V  C  M  K  T  L  Y  F  L  N  L  S  L  A  V  R :   Q  F  *  I  F  S  R  S  S  L  I  Q  L  V  L  I  C  N  L  L  L  T  I  Y  P  R  R  I  H  Q  L  L  E  S  H  G  T  W  :  N  G  G  E  D  L  F  L  L  A  K  D  A  A  F  I  D  W  K  W  *  M  A  R  *  K  Y   : F  M  A  E  T  V  W  N  L  Q  S  S  R  G  R  R  H   </first_frame>
            <second_frame>  *  L  R  L  I  I  T  T  V  A  S  N  C  N  C  S  Y  G  D  A  Y  E  Q  H  L  I  L  F  S  P  P  T  Q  L  K  P  L  Y  I  Y  H  C  R  C  R  R  Q  L  T  R  R  S  S  *  C  Q  L  L  Y  R  L  S  I  *  D  R  F  W  P  S  D  K  T  S  G  C  T  E  *  Q  S  N  G  *  G  Y  F  I  L  *  F  C  N  *  F  R  V  G  G  E  C  G  E  E  I  L  C  R  N  K  *  A  G  F  G  L  C  R  R  T  Y  C  *  G  L  C  V  *  R  P  C  I  S  S  T  F  R  W  P  *   : G  N  S  R  F  F  Q  E  V  H  *  F  S  W  F  *  S  A  I  C  Y  *  R  Y  I  Q  G  G  F  I  S  C  W  S  H  M  A  L  G :   M  E  G  K  T  F  S  F  *  Q  R  M  Q  L  L  S  I  G  S  G  E  W  P  D  E  N  T  :  L  W  Q  R  Q  C  G  T  C  S  Q  A  G  G  D  G  I  </second_frame>
            <third_frame>   S  C  A  S  *  S  Q  Q  *  H  Q  T  A  I  A  A  M  V  M  L  M  S  S  T  S  S  F  S  L  L  P  L  N  S  N  P  S  T  S  T  T  A  A  V  V  G  N  S  P  A  V  L  H  S  V  N  C  C  T  D  Y  L  F  R  I  V  S  G  H  R  I  R  Q  V  A  V  R  N  S  N  R  T  A  E  V  T  S  S  S  D  S  V  T  D  L  E  S  A  A  S  V  V  R  K  F  Y  A  G  I  N  R  R  D  L  D  S  V  E  E  L  I  A  E  D  C  V  Y  E  D  L  V  F  P  Q  P  F  V  G  R  K  :  A  I  L  D  F  F  K  K  F  T  D  S  V  G  S  D  L  Q  F  V  I  D  D  I  S  K  E  D  S  S  A  V  G  V  T  W  H  L   : E  W  R  G  R  P  F  P  F  S  K  G  C  S  F  Y  R  L  E  V  V  N  G  Q  M  K  I  L :   Y  G  R  D  S  V  E  P  A  V  K  P  G  E  T  A  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0153O03.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81818" stop="81426"/>
                    <exon start="78138" stop="78024"/>
                    <exon start="77923" stop="77842"/>
                    <exon start="76605" stop="76554"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HQTAIAAMVMLMSSTSSFSLLPLNSNPSTSTTAAVVGNSPAVLHSVNCCTDYLFRIVSGHRIRQVAVRNSNRTAEVTSSSDSVTDLESAASVVRKFYAGINRRDLDSVEELIAEDCVYEDLVFPQPFVGRKAILDFFKKFTDSVGSDLQFVIDDISKEDSSAVGVTWHLEWRGRPFPFSKGCSFYRLEVVNGQMKILYGRDSVEPAVKPGETAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 481 chains have been computed
$ 
$ memory statistics:
$ 388664 bytes spliced alignments in total
$ 79 spliced alignments have been stored
$ 4919 bytes was the average size of a spliced alignment
$ 31008 bytes predicted gene locations in total
$ 22 predicted gene locations have been stored
$ 1409 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 541 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 14:28:43
-->
