<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 14:24:57"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738562" ref_strand="+" ref_description="SGN-E738562 [LC14AE12]">
      <seq>cagaatagtacgaagcagcatgatttcttgaagcaatccgaatccccccagtttaatgtggcttctaatgctcagtctgcgaaagtaccatattctgttgctgttactggctccagtagttcatacctcaaaggatccccaacgtcgggattgaatggtggaggtggcgtactgtctcagtatccccatttggatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14579" stop="15375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14879" g_stop="15075" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E738562" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>197</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14879" e_stop="15075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATAGTACGAAGCAGCATGATTTCTTGAAGCAATCCGAATCCCCCCAGTTTAATGTGGCTTCTAATGCTCAGTCTGCGAAAGTACCATATTCTGTTGCTGTTACTGGCTCCAGTAGTTCATACCTCAAAGGATCCCCAACGTCGGGATTGAATGGTGGAGGTGGCGTACTGTCTCAGTATCCCCATTTGGATAG</genome_strand>
        <mrna_strand>CAGAATAGTACGAAGCAGCATGATTTCTTGAAGCAATCCGAATCCCCCCAGTTTAATGTGGCTTCTAATGCTCAGTCTGCGAAAGTACCATATTCTGTTGCTGTTACTGGCTCCAGTAGTTCATACCTCAAAGGATCCCCAACGTCGGGATTGAATGGTGGAGGTGGCGTACTGTCTCAGTATCCCCATTTGGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739547" ref_strand="+" ref_description="SGN-E739547 [LC17DE09]">
      <seq>cagaatagtacgaagcagcatgatttcttgaagcaatccgaatccccccagtttaatgtggcttctaatgctcagtctgcgaaagtaccatattctgttgctgttactggctccagtagttcatacctcaaaggatccccaacgtcgggattgaatggtggaggtggcgtactgtctcagtatccccatttggatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14579" stop="15375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14879" g_stop="15075" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E739547" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>197</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14879" e_stop="15075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATAGTACGAAGCAGCATGATTTCTTGAAGCAATCCGAATCCCCCCAGTTTAATGTGGCTTCTAATGCTCAGTCTGCGAAAGTACCATATTCTGTTGCTGTTACTGGCTCCAGTAGTTCATACCTCAAAGGATCCCCAACGTCGGGATTGAATGGTGGAGGTGGCGTACTGTCTCAGTATCCCCATTTGGATAG</genome_strand>
        <mrna_strand>CAGAATAGTACGAAGCAGCATGATTTCTTGAAGCAATCCGAATCCCCCCAGTTTAATGTGGCTTCTAATGCTCAGTCTGCGAAAGTACCATATTCTGTTGCTGTTACTGGCTCCAGTAGTTCATACCTCAAAGGATCCCCAACGTCGGGATTGAATGGTGGAGGTGGCGTACTGTCTCAGTATCCCCATTTGGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706091" ref_strand="+" ref_description="SGN-E706091 [FA28DH11]">
      <seq>ccttggacaggaactatatgggtaattcatatgtggacttgtttcagaaagcttatctcagtagtgtgctacctcagaaatctcaatatggggtcccattaaatagcaagactagcggttcaggtcatcctggctattatggaaattctgcatttggagttggtctatcatatcctgggagtcctttagcaagtccagtctctccagtaggacctggtagtcctatgaggcatagtgattataatatgagatttcctggtagaataagaaacatagctggaggtgtcatgggaccatatcacttggataacatggagaacagcgtcgcatcctccctactggaggagttcaaaagcaacaaggccaagtgttttgaactttcagaaattgcaggtcacgttgttgagttcagtgctgaccagtatgggagccgattcattcaacaaaaactcgaaactgcaaccactgaggaaaaaaacatggttttccaggaaattttcccccaagctcttactttgatgactgatgtctttgggaattatgtaatccagaagttttttgaacatggaatggcatctcagaggagagaattggctagcatactctttgggcatgttctaacgctgagccttcaaatgtatggttgtcgtgtgatacaaaaggcaatagaagtagttgacgtggaccagaaaattanaatggttgaggagcttgatggtcatgttatgcgctgtgtacgagatcagaatggtaatcatgtcattcagaaatgtattgaatgcgtaccagaacttcatatccaatttatcgtctcaacattttttggacaagttattactctctcaacccatccatatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15087" stop="16938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15387" g_stop="15798" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15799" i_stop="15884" i_length="86">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15885" g_stop="16026" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="554" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16027" i_stop="16139" i_length="113">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16140" g_stop="16247" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="662" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16248" i_stop="16440" i_length="193">
            <donor d_prob="0.789" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16441" g_stop="16638" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="860" r_length="198" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E706091" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15387" e_stop="15798"/>
          <exon e_start="15885" e_stop="16026"/>
          <exon e_start="16140" e_stop="16247"/>
          <exon e_start="16441" e_stop="16638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGGACAGGAACTATATGGGTAATTCATATGTGGACTTGTTTCAGAAAGCTTATCTCAGTAGTGTGCTACCTCAGAAATCTCAATATGGGGTCCCATTAAATAGCAAGACTAGCGGTTCAGGTCATCCTGGCTATTATGGAAATTCTGCATTTGGAGTTGGTCTATCATATCCTGGGAGTCCTTTAGCAAGTCCAGTCTCTCCAGTAGGACCTGGTAGTCCTATGAGGCATAGTGATTATAATATGAGATTTCCTGGTAGAATAAGAAACATAGCTGGAGGTGTCATGGGACCATATCACTTGGATAACATGGAGAACAGCGTCGCATCCTCCCTACTGGAGGAGTTCAAAAGCAACAAGGCCAAGTGTTTTGAACTTTCAGAAATTGCAGGTCACGTTGTTGAGTTCAGGTATGTATCATTAATTTTGTTCTACTTGGTCTTTACCTACTTAAACTAGCCTCACTTCTAAAACTATAAATATCACCTGTGATCAGTGCTGACCAGTATGGGAGCCGATTCATTCAACAAAAACTCGAAACTGCAACCACTGAGGAAAAAAACATGGTTTTCCAGGAAATTTTCCCCCAAGCTCTTACTTTGATGACTGATGTCTTTGGGAATTATGTAATCCAGAAGGTATCTCTAACTTTGGTTGTTCTATGGAGTATATATTGATGTTGAGGTGCATGATCTCCAAGTCTGCTTTGTTTCTCTTTAAATGGGTTATAATGCATCTATTTCTCGTGCAGTTTTTTGAACATGGAATGGCATCTCAGAGGAGAGAATTGGCTAGCATACTCTTTGGGCATGTTCTAACGCTGAGCCTTCAAATGTATGGTTGTCGTGTGATACAAAAGGTATGCCAAAGTGAATCTAGGAATGCTCATACATGCTCAAGTGTTATCTGCTAGATTAATCTTTTGTTTTGGTTTTTATTCTGATACACTAAAAGTTAGCACCAACCAGTGGGCTCTCTGGGCTGATTATCAGCTTCTTCTCAATAACATGAGTTATATTGAGATGAAAATTGTGGTATGGTTGACTCTGCAGGCAATAGAAGTAGTTGACGTGGACCAGAAAATTAAAATGGTTGAGGAGCTTGATGGTCATGTTATGCGCTGTGTACGAGATCAGAATGGTAATCATGTCATTCAGAAATGTATTGAATGCGTACCAGAACTTCATATCCAATTTATCGTCTCAACATTTTTTGGACAAGTTATTACTCTCTCAACCCATCCATATGGC</genome_strand>
        <mrna_strand>CCTTGGACAGGAACTATATGGGTAATTCATATGTGGACTTGTTTCAGAAAGCTTATCTCAGTAGTGTGCTACCTCAGAAATCTCAATATGGGGTCCCATTAAATAGCAAGACTAGCGGTTCAGGTCATCCTGGCTATTATGGAAATTCTGCATTTGGAGTTGGTCTATCATATCCTGGGAGTCCTTTAGCAAGTCCAGTCTCTCCAGTAGGACCTGGTAGTCCTATGAGGCATAGTGATTATAATATGAGATTTCCTGGTAGAATAAGAAACATAGCTGGAGGTGTCATGGGACCATATCACTTGGATAACATGGAGAACAGCGTCGCATCCTCCCTACTGGAGGAGTTCAAAAGCAACAAGGCCAAGTGTTTTGAACTTTCAGAAATTGCAGGTCACGTTGTTGAGTTCAG......................................................................................TGCTGACCAGTATGGGAGCCGATTCATTCAACAAAAACTCGAAACTGCAACCACTGAGGAAAAAAACATGGTTTTCCAGGAAATTTTCCCCCAAGCTCTTACTTTGATGACTGATGTCTTTGGGAATTATGTAATCCAGAAG.................................................................................................................TTTTTTGAACATGGAATGGCATCTCAGAGGAGAGAATTGGCTAGCATACTCTTTGGGCATGTTCTAACGCTGAGCCTTCAAATGTATGGTTGTCGTGTGATACAAAAG.................................................................................................................................................................................................GCAATAGAAGTAGTTGACGTGGACCAGAAAATTANAATGGTTGAGGAGCTTGATGGTCATGTTATGCGCTGTGTACGAGATCAGAATGGTAATCATGTCATTCAGAAATGTATTGAATGCGTACCAGAACTTCATATCCAATTTATCGTCTCAACATTTTTTGGACAAGTTATTACTCTCTCAACCCATCCATATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708609" ref_strand="+" ref_description="SGN-E708609 [FA36AH11]">
      <seq>gcgctgtgtacgagatcagaatggtaatcatgtcattcagaaatgtattgaatgcgtaccagaacttcatatccaatttatcgtctcaacattttttggacaagttattactctctcaacccatccatatggctgtcgagttatacagagagtattggaacactgtgacaatccagaaactcaaagtaaagtgatggaagaaatccttggatctgtaagcatgttggcacaagatcaatatggcaattatgttgttcagcatgtattggagcacgggaagccggatgagcgctctactataattcaggaactagctgggaagattgtacaaatgagccagcagaaatttgcttcgaacgttgttgagaagtgtttaactttctgtaattccagtgaacgacagctattggtgaatgagatgcttggcacaactgatgaaaatgagcctcttcaggctatgatgaaagatcagtttgcaaattatgtagtacagaaggttctggaaacttgtagtgatcagcaacgcgagctgatcatgtcgagaattaaagttcacttgaatgctctgaagaaatatacttactgaaagcatattgtcgcccgtgttgaaaagctagttgctgctggggaaaggaggattgctgcgcagtccctaagtactgcttagtcatgtaggaaaagaaagttgtacagctaactgaggctagtttgagctacctatcttccacatctgtgttttgttatttgcaaataaaagttgttgcatgtactagaggagatgtacattgtgtagttaaaaaaaataaatatcaggtatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16206" stop="20200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16506" g_stop="16653" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16654" i_stop="16737" i_length="84">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16738" g_stop="16848" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="259" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16849" i_stop="17674" i_length="826">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17675" g_stop="17869" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="454" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17870" i_stop="19285" i_length="1416">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19286" g_stop="19460" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="629" r_length="175" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19461" i_stop="19708" i_length="248">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19709" g_stop="19900" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="820" r_length="191" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E708609" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16506" e_stop="16653"/>
          <exon e_start="16738" e_stop="16848"/>
          <exon e_start="17675" e_stop="17869"/>
          <exon e_start="19286" e_stop="19460"/>
          <exon e_start="19709" e_stop="19900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCTGTGTACGAGATCAGAATGGTAATCATGTCATTCAGAAATGTATTGAATGCGTACCAGAACTTCATATCCAATTTATCGTCTCAACATTTTTTGGACAAGTTATTACTCTCTCAACCCATCCATATGGCTGTCGAGTTATACAGGTAGATAAGTGATGTTTCTTACCCATTTGTCATTGTAATTTACTTTGATATAGTACTAATATTCCTTGATCCTTGATCTTTCAGAGAGTATTGGAACACTGTGACAATCCAGAAACTCAAAGTAAAGTGATGGAAGAAATCCTTGGATCTGTAAGCATGTTGGCACAAGATCAATATGGCAATTATGTTGTTCAGGTATGTAATATTCACTACTCAGCAATTTGCTGCAGCTGGCGTGTGGACTATCGTATTTAGAAGTAACTATTTTTTGGTTCTTTTTCTTGAATTAGTTGTTTTTTGTACACACTATCTTCACTTCTTGACTAGTATGGAGCAATGCATAAAATGTACCCGAGTTGGGAATTCCTGATTTTATTTTGATAAGGTAAAAGTTGATTACTGTAATGAAGTACCAAGATGTACAAAGACATTACAGGGAAATACAGAACTCCCTGAACATCTAACCCTCCCAGCAGACACAAGAAGTTCTGTTATGAGCATATACTTTGCTTATTTTTAAATATGGAATATCACACATTTCATTCCATTGATTGATGGCTCTGTCAGTTTCGCAACTTTAGTTGTTTGCGATGTCGTTAATTTTTTTTTTTACTTCTTTGAAAACTAGAAGTTAGAAAATTGAAAAACTATTCACAAAAAATTTCAACCATATGCACGCACATACACATTCACGTGGTTCTCTAGTGTTACCAATGTATGCCGTCACCCTTAACAGGATGCTAAATGGGGAACCTAGTACCTGTTCTGGCTAGAAGAAAAAGGTTATTAAGAAATGGTATTCCCCTCTATTATAAGACAGAAGCCCTTCTTGAGTTCTTATTTGCTTCCTTTGATTTTGTTTTAATAGAGTATTAGTGAGTGAAAGCGCTCTTTTATTCGGTTAAAAGTTTGCTTGTAAAAATTTAGCAAAGATGTCTTGCATCCCTATACTGAGGTACAATTCGACCTTTTTTCCTTGTACTTATTCATCCCTCTGTTGTTTCAAATGCAATACTTCCAGCATGTATTGGAGCACGGGAAGCCGGATGAGCGCTCTACTATAATTCAGGAACTAGCTGGGAAGATTGTACAAATGAGCCAGCAGAAATTTGCTTCGAACGTTGTTGAGAAGTGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGAAAATGAGCCTCTTCAGGTTTGTCTAAATTTTATTCAACATTTTACCATTTAAGCAGGATTTTGATTTGCATATGGCTACTGGGTTCATAATATTCAGTACTGCTTCAAGATAACCTATATGGGAACTTCAATTTTTTTATTATTGTAAGCAACTTCTCTATCTTCACAAGATGGGGGTAAGATTGCTTACACATCACCTTGGGCAGACCCAGACCCAGTTACACTAGGTATGATGTTGCTGCTGCATCAGGGTGGAGTATAATCCACCTATGTTGAGCATTTGTTGAACTTTTAAACTCTTGCATGCACCTGCCTGAATTTCCAAATTCCGGGGTAGCAAGCTTGGTTGAGGATATGTTGGAGCTTCTGGATAGGATGTTTGAGCCTAGAGATTGCTGAACTAATGATTGTTGTCTTTTGGTGGGCCTCTATTGAGATACAACCCTATCAAGTTCTTTACCTCTGTTTATGTTCCTGTTCCTGTTGAGATGCATGGCATTGCAGTCTCAGATTAATCGCTAAGGTTCCCAGCTGTTTTAATTTTAGGATGTAGCTTGAATGGGACATCAGTCTCTTAAGAAAGGTTGAACTTGGAAGAAAAAATTGGTATAACCGATATTTTGTGGCACTTGTTTTTGAAAGGCAAGAAGTGGTTGAAGATGAAGTTACCAAACAATCATTCATTAATCCCGATTCTTCTATTATTCAGTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTCTTTGCATCTTTGGGAATAGAGTTTATCTAAGAAGTACTACCACATGTACCTATGGTTTTGATTTTGGTAGCAGTTGTAACATATAAACTTTTAAATAGTCTTGTTTCTCTTCTCTCTTCTCTAATTGAAATCAGTTGTGCATTGTGTTTTCACATCTTTCTTCTTTTTATCCAGGCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACGGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGGGTGAGCTCTTTTTCTGTTTGTACTTGTCTAGATGGTGTTTTTGGCCATAACTTTACATGCAAATACAGCACTATTGAAAAAAAAAATTCACTTATAAATCTTCCAACCTTTTTTCCAAGTGATACAATTCCAACTTACAAAGACTCGTTCTCCAACTTCCGACTTCAATAACTTGTTTTGTTTTGAGGTTTCAACTGAATATTGTCCGAACGTCTGCTAAATGATTTTTGTATGCTGTTGTTTTGCAGAAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGTACAGCTAACTGAGGCTAGTTTGAGCTACCTATCTTCCACATCTGTGTTTTGTTATTTGCAAATAAAAGTTGTTGCATGTACTAGAGGAGATGTACATTGTGTAGTTAAAAAAACATAAATATCAGGTATGCT</genome_strand>
        <mrna_strand>GCGCTGTGTACGAGATCAGAATGGTAATCATGTCATTCAGAAATGTATTGAATGCGTACCAGAACTTCATATCCAATTTATCGTCTCAACATTTTTTGGACAAGTTATTACTCTCTCAACCCATCCATATGGCTGTCGAGTTATACAG....................................................................................AGAGTATTGGAACACTGTGACAATCCAGAAACTCAAAGTAAAGTGATGGAAGAAATCCTTGGATCTGTAAGCATGTTGGCACAAGATCAATATGGCAATTATGTTGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTATTGGAGCACGGGAAGCCGGATGAGCGCTCTACTATAATTCAGGAACTAGCTGGGAAGATTGTACAAATGAGCCAGCAGAAATTTGCTTCGAACGTTGTTGAGAAGTGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGAAAATGAGCCTCTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACTGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGG........................................................................................................................................................................................................................................................AAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGTACAGCTAACTGAGGCTAGTTTGAGCTACCTATCTTCCACATCTGTGTTTTGTTATTTGCAAATAAAAGTTGTTGCATGTACTAGAGGAGATGTACATTGTGTAGTTAAAAAAA-ATAAATATCAGGTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599416" ref_strand="+" ref_description="SGN-E599416 [52404]">
      <seq>gtcattcagaaatgtattgaatgtgtaccagaagttcatatccaatttatcgtctcaacattttttggacaagttattactctctctactcatccatatggctgtcgagtaatacagagagtattggaacactctggcgatccagaaactcaaagtaaagtgatggaagaaatccttggatctgtaagcatgttggcacaagatcaatatggcaattatgttgttcagcatgtattggagcacgggaagccggatgagcgctctactataattaaggaactggctgggaagatcgtgcaaatgagccagcagaagtttgcctctaacgttgttgagaagtgtttaactttctgtaattccagtgaacgacagctattggtgaatgagatgcttggcacaactgatgaaaatgagcctcttcaggctatgatgaaagatcagtttgcaaattatgtagtacagaaagttctggaaacttgtagtgatcagcaacgcgagctgatcatgtcgagaataaaagttcacttgaatgctctgaagaaatacacttacggaaagcatattgtcgcccgtgttgaaaagctagttgctgctggggaaaggaggattgctgcgcagtccctaagtactgctttagtcttgttaggaccaagacagttgtacagctaacttgaggctagttgagctacctatcttccacatctgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16237" stop="20115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16537" g_stop="16653" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16654" i_stop="16737" i_length="84">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16738" g_stop="16848" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="228" r_length="111" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16849" i_stop="17674" i_length="826">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17675" g_stop="17869" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="423" r_length="195" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17870" i_stop="19285" i_length="1416">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19286" g_stop="19460" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="598" r_length="175" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19461" i_stop="19708" i_length="248">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19709" g_stop="19815" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="708" r_length="110" r_score="0.888"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E599416" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16537" e_stop="16653"/>
          <exon e_start="16738" e_stop="16848"/>
          <exon e_start="17675" e_stop="17869"/>
          <exon e_start="19286" e_stop="19460"/>
          <exon e_start="19709" e_stop="19815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATTCAGAAATGTATTGAATGCGTACCAGAACTTCATATCCAATTTATCGTCTCAACATTTTTTGGACAAGTTATTACTCTCTCAACCCATCCATATGGCTGTCGAGTTATACAGGTAGATAAGTGATGTTTCTTACCCATTTGTCATTGTAATTTACTTTGATATAGTACTAATATTCCTTGATCCTTGATCTTTCAGAGAGTATTGGAACACTGTGACAATCCAGAAACTCAAAGTAAAGTGATGGAAGAAATCCTTGGATCTGTAAGCATGTTGGCACAAGATCAATATGGCAATTATGTTGTTCAGGTATGTAATATTCACTACTCAGCAATTTGCTGCAGCTGGCGTGTGGACTATCGTATTTAGAAGTAACTATTTTTTGGTTCTTTTTCTTGAATTAGTTGTTTTTTGTACACACTATCTTCACTTCTTGACTAGTATGGAGCAATGCATAAAATGTACCCGAGTTGGGAATTCCTGATTTTATTTTGATAAGGTAAAAGTTGATTACTGTAATGAAGTACCAAGATGTACAAAGACATTACAGGGAAATACAGAACTCCCTGAACATCTAACCCTCCCAGCAGACACAAGAAGTTCTGTTATGAGCATATACTTTGCTTATTTTTAAATATGGAATATCACACATTTCATTCCATTGATTGATGGCTCTGTCAGTTTCGCAACTTTAGTTGTTTGCGATGTCGTTAATTTTTTTTTTTACTTCTTTGAAAACTAGAAGTTAGAAAATTGAAAAACTATTCACAAAAAATTTCAACCATATGCACGCACATACACATTCACGTGGTTCTCTAGTGTTACCAATGTATGCCGTCACCCTTAACAGGATGCTAAATGGGGAACCTAGTACCTGTTCTGGCTAGAAGAAAAAGGTTATTAAGAAATGGTATTCCCCTCTATTATAAGACAGAAGCCCTTCTTGAGTTCTTATTTGCTTCCTTTGATTTTGTTTTAATAGAGTATTAGTGAGTGAAAGCGCTCTTTTATTCGGTTAAAAGTTTGCTTGTAAAAATTTAGCAAAGATGTCTTGCATCCCTATACTGAGGTACAATTCGACCTTTTTTCCTTGTACTTATTCATCCCTCTGTTGTTTCAAATGCAATACTTCCAGCATGTATTGGAGCACGGGAAGCCGGATGAGCGCTCTACTATAATTCAGGAACTAGCTGGGAAGATTGTACAAATGAGCCAGCAGAAATTTGCTTCGAACGTTGTTGAGAAGTGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGAAAATGAGCCTCTTCAGGTTTGTCTAAATTTTATTCAACATTTTACCATTTAAGCAGGATTTTGATTTGCATATGGCTACTGGGTTCATAATATTCAGTACTGCTTCAAGATAACCTATATGGGAACTTCAATTTTTTTATTATTGTAAGCAACTTCTCTATCTTCACAAGATGGGGGTAAGATTGCTTACACATCACCTTGGGCAGACCCAGACCCAGTTACACTAGGTATGATGTTGCTGCTGCATCAGGGTGGAGTATAATCCACCTATGTTGAGCATTTGTTGAACTTTTAAACTCTTGCATGCACCTGCCTGAATTTCCAAATTCCGGGGTAGCAAGCTTGGTTGAGGATATGTTGGAGCTTCTGGATAGGATGTTTGAGCCTAGAGATTGCTGAACTAATGATTGTTGTCTTTTGGTGGGCCTCTATTGAGATACAACCCTATCAAGTTCTTTACCTCTGTTTATGTTCCTGTTCCTGTTGAGATGCATGGCATTGCAGTCTCAGATTAATCGCTAAGGTTCCCAGCTGTTTTAATTTTAGGATGTAGCTTGAATGGGACATCAGTCTCTTAAGAAAGGTTGAACTTGGAAGAAAAAATTGGTATAACCGATATTTTGTGGCACTTGTTTTTGAAAGGCAAGAAGTGGTTGAAGATGAAGTTACCAAACAATCATTCATTAATCCCGATTCTTCTATTATTCAGTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTCTTTGCATCTTTGGGAATAGAGTTTATCTAAGAAGTACTACCACATGTACCTATGGTTTTGATTTTGGTAGCAGTTGTAACATATAAACTTTTAAATAGTCTTGTTTCTCTTCTCTCTTCTCTAATTGAAATCAGTTGTGCATTGTGTTTTCACATCTTTCTTCTTTTTATCCAGGCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACGGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGGGTGAGCTCTTTTTCTGTTTGTACTTGTCTAGATGGTGTTTTTGGCCATAACTTTACATGCAAATACAGCACTATTGAAAAAAAAAATTCACTTATAAATCTTCCAACCTTTTTTCCAAGTGATACAATTCCAACTTACAAAGACTCGTTCTCCAACTTCCGACTTCAATAACTTGTTTTGTTTTGAGGTTTCAACTGAATATTGTCCGAACGTCTGCTAAATGATTTTTGTATGCTGTTGTTTTGCAGAAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGC-TTAGTCATG-TAGGA-AAAGAAAGTTGTACAGCTAAC-TGAGGCTAGTTTGAGCTACCTATCTTCCACATCTGTGT</genome_strand>
        <mrna_strand>GTCATTCAGAAATGTATTGAATGTGTACCAGAAGTTCATATCCAATTTATCGTCTCAACATTTTTTGGACAAGTTATTACTCTCTCTACTCATCCATATGGCTGTCGAGTAATACAG....................................................................................AGAGTATTGGAACACTCTGGCGATCCAGAAACTCAAAGTAAAGTGATGGAAGAAATCCTTGGATCTGTAAGCATGTTGGCACAAGATCAATATGGCAATTATGTTGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTATTGGAGCACGGGAAGCCGGATGAGCGCTCTACTATAATTAAGGAACTGGCTGGGAAGATCGTGCAAATGAGCCAGCAGAAGTTTGCCTCTAACGTTGTTGAGAAGTGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGAAAATGAGCCTCTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAAGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATAAAAGTTCACTTGAATGCTCTGAAGAAATACACTTACGGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGG........................................................................................................................................................................................................................................................AAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTTAGTCTTGTTAGGACCAAGACAGTTGTACAGCTAACTTGAGGCTAG-TTGAGCTACCTATCTTCCACATCTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204681" ref_strand="+" ref_description="SGN-E204681 [cLEC-14-F21]">
      <seq>ttactctctcaacccatccatatggctgtcgagttatacagagagtattggaacactgtgacaatccagaaactcaaagtaaagtgatggaagaaatccttggatctgtaagcatgttggcacaagatcaatatggcaattatgttgttcagcatgtattggagcacgggaagccggatgagcgctctactataattcaggaactagctgggaagattgtacaaatgagccagcagaaatttgcttcgaacgttgttgagaagtgtttaactttctgtaattccagtgaacgacagctattggtgaatgagatgcttggcacaactgatgaaaatgagcctcttcaggctatgatgaaagatcagtttgcaaattatgtattacagaaggttctggaaacttgtagtgatcagcaacgcgagctgatcatgtcgagaattaaagttcacttgaatgctctgaagaaatatacttacggaaagcatattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16313" stop="19727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16613" g_stop="16653" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16654" i_stop="16737" i_length="84">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16738" g_stop="16848" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="152" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16849" i_stop="17674" i_length="826">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17675" g_stop="17869" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="347" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17870" i_stop="19285" i_length="1416">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19286" g_stop="19427" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="489" r_length="142" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E204681" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16613" e_stop="16653"/>
          <exon e_start="16738" e_stop="16848"/>
          <exon e_start="17675" e_stop="17869"/>
          <exon e_start="19286" e_stop="19427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTCTCTCAACCCATCCATATGGCTGTCGAGTTATACAGGTAGATAAGTGATGTTTCTTACCCATTTGTCATTGTAATTTACTTTGATATAGTACTAATATTCCTTGATCCTTGATCTTTCAGAGAGTATTGGAACACTGTGACAATCCAGAAACTCAAAGTAAAGTGATGGAAGAAATCCTTGGATCTGTAAGCATGTTGGCACAAGATCAATATGGCAATTATGTTGTTCAGGTATGTAATATTCACTACTCAGCAATTTGCTGCAGCTGGCGTGTGGACTATCGTATTTAGAAGTAACTATTTTTTGGTTCTTTTTCTTGAATTAGTTGTTTTTTGTACACACTATCTTCACTTCTTGACTAGTATGGAGCAATGCATAAAATGTACCCGAGTTGGGAATTCCTGATTTTATTTTGATAAGGTAAAAGTTGATTACTGTAATGAAGTACCAAGATGTACAAAGACATTACAGGGAAATACAGAACTCCCTGAACATCTAACCCTCCCAGCAGACACAAGAAGTTCTGTTATGAGCATATACTTTGCTTATTTTTAAATATGGAATATCACACATTTCATTCCATTGATTGATGGCTCTGTCAGTTTCGCAACTTTAGTTGTTTGCGATGTCGTTAATTTTTTTTTTTACTTCTTTGAAAACTAGAAGTTAGAAAATTGAAAAACTATTCACAAAAAATTTCAACCATATGCACGCACATACACATTCACGTGGTTCTCTAGTGTTACCAATGTATGCCGTCACCCTTAACAGGATGCTAAATGGGGAACCTAGTACCTGTTCTGGCTAGAAGAAAAAGGTTATTAAGAAATGGTATTCCCCTCTATTATAAGACAGAAGCCCTTCTTGAGTTCTTATTTGCTTCCTTTGATTTTGTTTTAATAGAGTATTAGTGAGTGAAAGCGCTCTTTTATTCGGTTAAAAGTTTGCTTGTAAAAATTTAGCAAAGATGTCTTGCATCCCTATACTGAGGTACAATTCGACCTTTTTTCCTTGTACTTATTCATCCCTCTGTTGTTTCAAATGCAATACTTCCAGCATGTATTGGAGCACGGGAAGCCGGATGAGCGCTCTACTATAATTCAGGAACTAGCTGGGAAGATTGTACAAATGAGCCAGCAGAAATTTGCTTCGAACGTTGTTGAGAAGTGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGAAAATGAGCCTCTTCAGGTTTGTCTAAATTTTATTCAACATTTTACCATTTAAGCAGGATTTTGATTTGCATATGGCTACTGGGTTCATAATATTCAGTACTGCTTCAAGATAACCTATATGGGAACTTCAATTTTTTTATTATTGTAAGCAACTTCTCTATCTTCACAAGATGGGGGTAAGATTGCTTACACATCACCTTGGGCAGACCCAGACCCAGTTACACTAGGTATGATGTTGCTGCTGCATCAGGGTGGAGTATAATCCACCTATGTTGAGCATTTGTTGAACTTTTAAACTCTTGCATGCACCTGCCTGAATTTCCAAATTCCGGGGTAGCAAGCTTGGTTGAGGATATGTTGGAGCTTCTGGATAGGATGTTTGAGCCTAGAGATTGCTGAACTAATGATTGTTGTCTTTTGGTGGGCCTCTATTGAGATACAACCCTATCAAGTTCTTTACCTCTGTTTATGTTCCTGTTCCTGTTGAGATGCATGGCATTGCAGTCTCAGATTAATCGCTAAGGTTCCCAGCTGTTTTAATTTTAGGATGTAGCTTGAATGGGACATCAGTCTCTTAAGAAAGGTTGAACTTGGAAGAAAAAATTGGTATAACCGATATTTTGTGGCACTTGTTTTTGAAAGGCAAGAAGTGGTTGAAGATGAAGTTACCAAACAATCATTCATTAATCCCGATTCTTCTATTATTCAGTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTCTTTGCATCTTTGGGAATAGAGTTTATCTAAGAAGTACTACCACATGTACCTATGGTTTTGATTTTGGTAGCAGTTGTAACATATAAACTTTTAAATAGTCTTGTTTCTCTTCTCTCTTCTCTAATTGAAATCAGTTGTGCATTGTGTTTTCACATCTTTCTTCTTTTTATCCAGGCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACGGAAAGCATATTG</genome_strand>
        <mrna_strand>TTACTCTCTCAACCCATCCATATGGCTGTCGAGTTATACAG....................................................................................AGAGTATTGGAACACTGTGACAATCCAGAAACTCAAAGTAAAGTGATGGAAGAAATCCTTGGATCTGTAAGCATGTTGGCACAAGATCAATATGGCAATTATGTTGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTATTGGAGCACGGGAAGCCGGATGAGCGCTCTACTATAATTCAGGAACTAGCTGGGAAGATTGTACAAATGAGCCAGCAGAAATTTGCTTCGAACGTTGTTGAGAAGTGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGAAAATGAGCCTCTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGATGAAAGATCAGTTTGCAAATTATGTATTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACGGAAAGCATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212554" ref_strand="+" ref_description="SGN-E212554 [cLEC-74-D15]">
      <seq>gaaatccttggatctgtaagcatgttggcacaagatcaatatggcaattatgttgttcagcatgtattggagcacgggaagccggatgagcgctctactataattcaggaactagctgggaagattgtacaaatgagccagcagaaatttgcttcgaacgttgttgagaagtgtttaactttctgtaattccagtgaacgacagctattggtgaatgagatgcttggcacaactgatgaaaatgagcctcttcaggctatgatgaaagatcagtttgcaaattatgtagtacagaaggttctggaaacttgtagtgatcagcaacgcgagctgatcatgtcgagaattaaagttcacttgaatgctctgaagaaatatacttacggaaagcatattgtcgcccgtgttgaaaagctagttgctgctggggaaaggaggattgctgcgcagtccctaagtactgcttagtcatgtaggaaaagaaagttgtacagctaactgaggctagtttgagctacctatcttccacatctgtgttttgttatttgcaaataaaagttgttgcatgtactagaggagatgtacattgtgtagttaaaaaaacataaatatcaggtatgctgaagctcagatgtcaaatattcgagatggctgtgcagatggaagttgaggtgtaaaaaaaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16489" stop="20265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16789" g_stop="16848" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16849" i_stop="17674" i_length="826">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17675" g_stop="17869" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="255" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17870" i_stop="19285" i_length="1416">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19286" g_stop="19460" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="430" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19461" i_stop="19708" i_length="248">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19709" g_stop="19965" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="686" r_length="256" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E212554" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16789" e_stop="16848"/>
          <exon e_start="17675" e_stop="17869"/>
          <exon e_start="19286" e_stop="19460"/>
          <exon e_start="19709" e_stop="19965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCCTTGGATCTGTAAGCATGTTGGCACAAGATCAATATGGCAATTATGTTGTTCAGGTATGTAATATTCACTACTCAGCAATTTGCTGCAGCTGGCGTGTGGACTATCGTATTTAGAAGTAACTATTTTTTGGTTCTTTTTCTTGAATTAGTTGTTTTTTGTACACACTATCTTCACTTCTTGACTAGTATGGAGCAATGCATAAAATGTACCCGAGTTGGGAATTCCTGATTTTATTTTGATAAGGTAAAAGTTGATTACTGTAATGAAGTACCAAGATGTACAAAGACATTACAGGGAAATACAGAACTCCCTGAACATCTAACCCTCCCAGCAGACACAAGAAGTTCTGTTATGAGCATATACTTTGCTTATTTTTAAATATGGAATATCACACATTTCATTCCATTGATTGATGGCTCTGTCAGTTTCGCAACTTTAGTTGTTTGCGATGTCGTTAATTTTTTTTTTTACTTCTTTGAAAACTAGAAGTTAGAAAATTGAAAAACTATTCACAAAAAATTTCAACCATATGCACGCACATACACATTCACGTGGTTCTCTAGTGTTACCAATGTATGCCGTCACCCTTAACAGGATGCTAAATGGGGAACCTAGTACCTGTTCTGGCTAGAAGAAAAAGGTTATTAAGAAATGGTATTCCCCTCTATTATAAGACAGAAGCCCTTCTTGAGTTCTTATTTGCTTCCTTTGATTTTGTTTTAATAGAGTATTAGTGAGTGAAAGCGCTCTTTTATTCGGTTAAAAGTTTGCTTGTAAAAATTTAGCAAAGATGTCTTGCATCCCTATACTGAGGTACAATTCGACCTTTTTTCCTTGTACTTATTCATCCCTCTGTTGTTTCAAATGCAATACTTCCAGCATGTATTGGAGCACGGGAAGCCGGATGAGCGCTCTACTATAATTCAGGAACTAGCTGGGAAGATTGTACAAATGAGCCAGCAGAAATTTGCTTCGAACGTTGTTGAGAAGTGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGAAAATGAGCCTCTTCAGGTTTGTCTAAATTTTATTCAACATTTTACCATTTAAGCAGGATTTTGATTTGCATATGGCTACTGGGTTCATAATATTCAGTACTGCTTCAAGATAACCTATATGGGAACTTCAATTTTTTTATTATTGTAAGCAACTTCTCTATCTTCACAAGATGGGGGTAAGATTGCTTACACATCACCTTGGGCAGACCCAGACCCAGTTACACTAGGTATGATGTTGCTGCTGCATCAGGGTGGAGTATAATCCACCTATGTTGAGCATTTGTTGAACTTTTAAACTCTTGCATGCACCTGCCTGAATTTCCAAATTCCGGGGTAGCAAGCTTGGTTGAGGATATGTTGGAGCTTCTGGATAGGATGTTTGAGCCTAGAGATTGCTGAACTAATGATTGTTGTCTTTTGGTGGGCCTCTATTGAGATACAACCCTATCAAGTTCTTTACCTCTGTTTATGTTCCTGTTCCTGTTGAGATGCATGGCATTGCAGTCTCAGATTAATCGCTAAGGTTCCCAGCTGTTTTAATTTTAGGATGTAGCTTGAATGGGACATCAGTCTCTTAAGAAAGGTTGAACTTGGAAGAAAAAATTGGTATAACCGATATTTTGTGGCACTTGTTTTTGAAAGGCAAGAAGTGGTTGAAGATGAAGTTACCAAACAATCATTCATTAATCCCGATTCTTCTATTATTCAGTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTCTTTGCATCTTTGGGAATAGAGTTTATCTAAGAAGTACTACCACATGTACCTATGGTTTTGATTTTGGTAGCAGTTGTAACATATAAACTTTTAAATAGTCTTGTTTCTCTTCTCTCTTCTCTAATTGAAATCAGTTGTGCATTGTGTTTTCACATCTTTCTTCTTTTTATCCAGGCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACGGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGGGTGAGCTCTTTTTCTGTTTGTACTTGTCTAGATGGTGTTTTTGGCCATAACTTTACATGCAAATACAGCACTATTGAAAAAAAAAATTCACTTATAAATCTTCCAACCTTTTTTCCAAGTGATACAATTCCAACTTACAAAGACTCGTTCTCCAACTTCCGACTTCAATAACTTGTTTTGTTTTGAGGTTTCAACTGAATATTGTCCGAACGTCTGCTAAATGATTTTTGTATGCTGTTGTTTTGCAGAAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGTACAGCTAACTGAGGCTAGTTTGAGCTACCTATCTTCCACATCTGTGTTTTGTTATTTGCAAATAAAAGTTGTTGCATGTACTAGAGGAGATGTACATTGTGTAGTTAAAAAAACATAAATATCAGGTATGCTGAAGCTCAGATGTCAAATATTCGAGATGGCTGTGCAGATGGAAGTTGAGGTGTAAAAAAAAAGGA</genome_strand>
        <mrna_strand>GAAATCCTTGGATCTGTAAGCATGTTGGCACAAGATCAATATGGCAATTATGTTGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTATTGGAGCACGGGAAGCCGGATGAGCGCTCTACTATAATTCAGGAACTAGCTGGGAAGATTGTACAAATGAGCCAGCAGAAATTTGCTTCGAACGTTGTTGAGAAGTGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGAAAATGAGCCTCTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACGGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGG........................................................................................................................................................................................................................................................AAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGTACAGCTAACTGAGGCTAGTTTGAGCTACCTATCTTCCACATCTGTGTTTTGTTATTTGCAAATAAAAGTTGTTGCATGTACTAGAGGAGATGTACATTGTGTAGTTAAAAAAACATAAATATCAGGTATGCTGAAGCTCAGATGTCAAATATTCGAGATGGCTGTGCAGATGGAAGTTGAGGTGT-AAAAAAAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408729" ref_strand="+" ref_description="SGN-E408729 [PPI-12-E3]">
      <seq>aaaattgaaaaaactatttacaaaagtttcaaccatatgcacgcacatacacattcacgtggttctctagggttaccaatatatgctgccacctttaacaggatgctaaatggggaacctagtacctgttctggctggaagaaaaagttattaagtaatggtattcccctcttttataagacagaagcccttcttgagttcttatttgctgcctttgattttgttttactagagtattagtgaatgaaagcgctcttttagtcggttaaaagtttgcttcttgtaaaaatgtagcaaagatgtcttgcatcgctttactgaggtacaattcgaccttttttccccttgtacttattcatccctctgttgttttaaatgcaatacttccagcatgtattggagcacgggaagccggatgagcgctctactataattaaggaactggctgggaagatcgtgcaaatgagccagcagaagtttgcctctaacgttgttgagaagtgtttaactttctgtaattccagtgaacgacagctattggtgaatgagatgcttggcacaactgatganaatgagagcctcttcaggctatgatgaaagatcagtttgcaaattatgtagtacagaaagttctggaaacttgtagtgatcagcaacgcgagctgatcatgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16989" stop="19672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17289" g_stop="17869" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17870" i_stop="19285" i_length="1416">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19286" g_stop="19372" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="674" r_length="87" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E408729" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17289" e_stop="17869"/>
          <exon e_start="19286" e_stop="19372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTG-AAAAACTATTCACAAAAAATTTCAACCATATGCACGCACATACACATTCACGTGGTTCTCTAGTGTTACCAATGTATGCCGTCACCCTTAACAGGATGCTAAATGGGGAACCTAGTACCTGTTCTGGCTAGAAGAAAAAGGTTATTAAGAAATGGTATTCCCCTCTATTATAAGACAGAAGCCCTTCTTGAGTTCTTATTTGCTTCCTTTGATTTTGTTTTAATAGAGTATTAGTGAGTGAAAGCGCTCTTTTATTCGGTTAAAAGTTTG---CTTGTAAAAATTTAGCAAAGATGTCTTGCATCCCTATACTGAGGTACAATTCGACCTTTTTT--CCTTGTACTTATTCATCCCTCTGTTGTTTCAAATGCAATACTTCCAGCATGTATTGGAGCACGGGAAGCCGGATGAGCGCTCTACTATAATTCAGGAACTAGCTGGGAAGATTGTACAAATGAGCCAGCAGAAATTTGCTTCGAACGTTGTTGAGAAGTGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGAAAAT--GAGCCTCTTCAGGTTTGTCTAAATTTTATTCAACATTTTACCATTTAAGCAGGATTTTGATTTGCATATGGCTACTGGGTTCATAATATTCAGTACTGCTTCAAGATAACCTATATGGGAACTTCAATTTTTTTATTATTGTAAGCAACTTCTCTATCTTCACAAGATGGGGGTAAGATTGCTTACACATCACCTTGGGCAGACCCAGACCCAGTTACACTAGGTATGATGTTGCTGCTGCATCAGGGTGGAGTATAATCCACCTATGTTGAGCATTTGTTGAACTTTTAAACTCTTGCATGCACCTGCCTGAATTTCCAAATTCCGGGGTAGCAAGCTTGGTTGAGGATATGTTGGAGCTTCTGGATAGGATGTTTGAGCCTAGAGATTGCTGAACTAATGATTGTTGTCTTTTGGTGGGCCTCTATTGAGATACAACCCTATCAAGTTCTTTACCTCTGTTTATGTTCCTGTTCCTGTTGAGATGCATGGCATTGCAGTCTCAGATTAATCGCTAAGGTTCCCAGCTGTTTTAATTTTAGGATGTAGCTTGAATGGGACATCAGTCTCTTAAGAAAGGTTGAACTTGGAAGAAAAAATTGGTATAACCGATATTTTGTGGCACTTGTTTTTGAAAGGCAAGAAGTGGTTGAAGATGAAGTTACCAAACAATCATTCATTAATCCCGATTCTTCTATTATTCAGTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTCTTTGCATCTTTGGGAATAGAGTTTATCTAAGAAGTACTACCACATGTACCTATGGTTTTGATTTTGGTAGCAGTTGTAACATATAAACTTTTAAATAGTCTTGTTTCTCTTCTCTCTTCTCTAATTGAAATCAGTTGTGCATTGTGTTTTCACATCTTTCTTCTTTTTATCCAGGCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCG</genome_strand>
        <mrna_strand>AAAATTGAAAAAACTATTTAC-AAAAGTTTCAACCATATGCACGCACATACACATTCACGTGGTTCTCTAGGGTTACCAATATATGCTGCCACCTTTAACAGGATGCTAAATGGGGAACCTAGTACCTGTTCTGGCTGGAAGAAAAA-GTTATTAAGTAATGGTATTCCCCTCTTTTATAAGACAGAAGCCCTTCTTGAGTTCTTATTTGCTGCCTTTGATTTTGTTTTACTAGAGTATTAGTGAATGAAAGCGCTCTTTTAGTCGGTTAAAAGTTTGCTTCTTGTAAAAATGTAGCAAAGATGTCTTGCATCGCTTTACTGAGGTACAATTCGACCTTTTTTCCCCTTGTACTTATTCATCCCTCTGTTGTTTTAAATGCAATACTTCCAGCATGTATTGGAGCACGGGAAGCCGGATGAGCGCTCTACTATAATTAAGGAACTGGCTGGGAAGATCGTGCAAATGAGCCAGCAGAAGTTTGCCTCTAACGTTGTTGAGAAGTGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGANAATGAGAGCCTCTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAAGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434997" ref_strand="+" ref_description="SGN-E434997 [STM-60-F24]">
      <seq>aaaattgaaaaaactatttacaaaagtttcaaccatatgcacgcacatacacattcacgtggttctctagggttaccaatatatgctgccacctttaacaggatgctaaatggggaacctagtacctgttctggctggaagaaaaagttattaagtaatggtattcccctcttttataagacagaagcccttcttgagttcttatttgctgcctttgattttgttttactagagtattagtgaatgaaagcgctcttttagtcggttaaaagtttgcttcttgtaaaaatgtagcaaagatgtcttgcatcgctttactgaggtacaattcgaccttttttccccttgtacttattcatccctctgttgttttaaatgcaatacttccagcatgtattggagcacgggaagccggatgagcgctctactataattaaggaactggctgggaagatcgtgcaaatgagccagcagaagtttgcctctaacgttgttgagaagtgtttaactttctgtaattccagtgaacgacagctattggtgaatgagatgcttggcacaactgatgaaaatgagcctcttcaggctatgatgaaagatcagtttgcaaattatgtagtacaaagtctgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16989" stop="19636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17289" g_stop="17869" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17870" i_stop="19285" i_length="1416">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19286" g_stop="19336" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="633" r_length="48" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E434997" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E434997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17289" e_stop="17869"/>
          <exon e_start="19286" e_stop="19336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTG-AAAAACTATTCACAAAAAATTTCAACCATATGCACGCACATACACATTCACGTGGTTCTCTAGTGTTACCAATGTATGCCGTCACCCTTAACAGGATGCTAAATGGGGAACCTAGTACCTGTTCTGGCTAGAAGAAAAAGGTTATTAAGAAATGGTATTCCCCTCTATTATAAGACAGAAGCCCTTCTTGAGTTCTTATTTGCTTCCTTTGATTTTGTTTTAATAGAGTATTAGTGAGTGAAAGCGCTCTTTTATTCGGTTAAAAGTTTG---CTTGTAAAAATTTAGCAAAGATGTCTTGCATCCCTATACTGAGGTACAATTCGACCTTTTTT--CCTTGTACTTATTCATCCCTCTGTTGTTTCAAATGCAATACTTCCAGCATGTATTGGAGCACGGGAAGCCGGATGAGCGCTCTACTATAATTCAGGAACTAGCTGGGAAGATTGTACAAATGAGCCAGCAGAAATTTGCTTCGAACGTTGTTGAGAAGTGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGAAAATGAGCCTCTTCAGGTTTGTCTAAATTTTATTCAACATTTTACCATTTAAGCAGGATTTTGATTTGCATATGGCTACTGGGTTCATAATATTCAGTACTGCTTCAAGATAACCTATATGGGAACTTCAATTTTTTTATTATTGTAAGCAACTTCTCTATCTTCACAAGATGGGGGTAAGATTGCTTACACATCACCTTGGGCAGACCCAGACCCAGTTACACTAGGTATGATGTTGCTGCTGCATCAGGGTGGAGTATAATCCACCTATGTTGAGCATTTGTTGAACTTTTAAACTCTTGCATGCACCTGCCTGAATTTCCAAATTCCGGGGTAGCAAGCTTGGTTGAGGATATGTTGGAGCTTCTGGATAGGATGTTTGAGCCTAGAGATTGCTGAACTAATGATTGTTGTCTTTTGGTGGGCCTCTATTGAGATACAACCCTATCAAGTTCTTTACCTCTGTTTATGTTCCTGTTCCTGTTGAGATGCATGGCATTGCAGTCTCAGATTAATCGCTAAGGTTCCCAGCTGTTTTAATTTTAGGATGTAGCTTGAATGGGACATCAGTCTCTTAAGAAAGGTTGAACTTGGAAGAAAAAATTGGTATAACCGATATTTTGTGGCACTTGTTTTTGAAAGGCAAGAAGTGGTTGAAGATGAAGTTACCAAACAATCATTCATTAATCCCGATTCTTCTATTATTCAGTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTCTTTGCATCTTTGGGAATAGAGTTTATCTAAGAAGTACTACCACATGTACCTATGGTTTTGATTTTGGTAGCAGTTGTAACATATAAACTTTTAAATAGTCTTGTTTCTCTTCTCTCTTCTCTAATTGAAATCAGTTGTGCATTGTGTTTTCACATCTTTCTTCTTTTTATCCAGGCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAA</genome_strand>
        <mrna_strand>AAAATTGAAAAAACTATTTAC-AAAAGTTTCAACCATATGCACGCACATACACATTCACGTGGTTCTCTAGGGTTACCAATATATGCTGCCACCTTTAACAGGATGCTAAATGGGGAACCTAGTACCTGTTCTGGCTGGAAGAAAAA-GTTATTAAGTAATGGTATTCCCCTCTTTTATAAGACAGAAGCCCTTCTTGAGTTCTTATTTGCTGCCTTTGATTTTGTTTTACTAGAGTATTAGTGAATGAAAGCGCTCTTTTAGTCGGTTAAAAGTTTGCTTCTTGTAAAAATGTAGCAAAGATGTCTTGCATCGCTTTACTGAGGTACAATTCGACCTTTTTTCCCCTTGTACTTATTCATCCCTCTGTTGTTTTAAATGCAATACTTCCAGCATGTATTGGAGCACGGGAAGCCGGATGAGCGCTCTACTATAATTAAGGAACTGGCTGGGAAGATCGTGCAAATGAGCCAGCAGAAGTTTGCCTCTAACGTTGTTGAGAAGTGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGAAAATGAGCCTCTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACA-AA-G-TCTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379803" ref_strand="+" ref_description="SGN-E379803 [TUS-1-N20](-)">
      <seq>gggaagccggatgagcgctctactataattcaggaactagctgggaagattgtacaaatgagccagcagaaatttgcttcgaacgttgttgagaagtgtttaactttctgtaattccagtgaacgacagctattggtgaatgagatgcttggcacaactgatgaaaatgagcctcttcaggctatgatgaaagatcagtttgcaaattatgtagtacagaaggttctggaaacttgtagtgatcagcaacgcgagctgatcatgtcgagaattaaagttcacttgaatgctctgaagaaatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17390" stop="19712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17690" g_stop="17869" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17870" i_stop="19285" i_length="1416">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19286" g_stop="19412" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="307" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E379803" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17690" e_stop="17869"/>
          <exon e_start="19286" e_stop="19412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAGCCGGATGAGCGCTCTACTATAATTCAGGAACTAGCTGGGAAGATTGTACAAATGAGCCAGCAGAAATTTGCTTCGAACGTTGTTGAGAAGTGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGAAAATGAGCCTCTTCAGGTTTGTCTAAATTTTATTCAACATTTTACCATTTAAGCAGGATTTTGATTTGCATATGGCTACTGGGTTCATAATATTCAGTACTGCTTCAAGATAACCTATATGGGAACTTCAATTTTTTTATTATTGTAAGCAACTTCTCTATCTTCACAAGATGGGGGTAAGATTGCTTACACATCACCTTGGGCAGACCCAGACCCAGTTACACTAGGTATGATGTTGCTGCTGCATCAGGGTGGAGTATAATCCACCTATGTTGAGCATTTGTTGAACTTTTAAACTCTTGCATGCACCTGCCTGAATTTCCAAATTCCGGGGTAGCAAGCTTGGTTGAGGATATGTTGGAGCTTCTGGATAGGATGTTTGAGCCTAGAGATTGCTGAACTAATGATTGTTGTCTTTTGGTGGGCCTCTATTGAGATACAACCCTATCAAGTTCTTTACCTCTGTTTATGTTCCTGTTCCTGTTGAGATGCATGGCATTGCAGTCTCAGATTAATCGCTAAGGTTCCCAGCTGTTTTAATTTTAGGATGTAGCTTGAATGGGACATCAGTCTCTTAAGAAAGGTTGAACTTGGAAGAAAAAATTGGTATAACCGATATTTTGTGGCACTTGTTTTTGAAAGGCAAGAAGTGGTTGAAGATGAAGTTACCAAACAATCATTCATTAATCCCGATTCTTCTATTATTCAGTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTCTTTGCATCTTTGGGAATAGAGTTTATCTAAGAAGTACTACCACATGTACCTATGGTTTTGATTTTGGTAGCAGTTGTAACATATAAACTTTTAAATAGTCTTGTTTCTCTTCTCTCTTCTCTAATTGAAATCAGTTGTGCATTGTGTTTTCACATCTTTCTTCTTTTTATCCAGGCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTT</genome_strand>
        <mrna_strand>GGGAAGCCGGATGAGCGCTCTACTATAATTCAGGAACTAGCTGGGAAGATTGTACAAATGAGCCAGCAGAAATTTGCTTCGAACGTTGTTGAGAAGTGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGAAAATGAGCCTCTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349060" ref_strand="+" ref_description="SGN-E349060 [cTOS-2-C12]">
      <seq>tgtttaactttctgtaattccagtgaacgacagctattggtgaatgagatgcttggcacaactgatgaaaatgagcctcttcaggctatgatgaaagatcagtttgcaaattatgtagtacagaaggttctggaaacttgtagtgatcagcaacgcgagctgatcatgtcgagaattaaagttcacttgaatgctctgaagaaatatacttacggaaagcatattgtcgcccgtgttgaaaagctagttgctgctggggaaaggaggattgctgcgcagtccctaagtactgcttagtcatgtaggaaaagaaagttgtacagctaactgaggctagtttgagctacctatcttccacatctgtgttttgttatttgcaaataaaagttgttgcatgtactagaggagatgtacattgtgtagttaaaaaaacataaatatcaggtatgctgaagctcagatgtcaaatattcgagatggctgtgcagatggaagttgaggtgtaaaaaaaaaggaagataaaaaaggcgaggtagttttacatcgacgcgactgtacaaatgttgccttttgttggagagttgatgttttaggggaaggtcagaattttattgtatggtatttcgacaattttatttcttttatggccaagtatattctacttcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17486" stop="20415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17786" g_stop="17869" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17870" i_stop="19285" i_length="1416">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19286" g_stop="19460" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="259" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19461" i_stop="19708" i_length="248">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19709" g_stop="20122" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="673" r_length="414" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E349060" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17786" e_stop="17869"/>
          <exon e_start="19286" e_stop="19460"/>
          <exon e_start="19709" e_stop="20122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGAAAATGAGCCTCTTCAGGTTTGTCTAAATTTTATTCAACATTTTACCATTTAAGCAGGATTTTGATTTGCATATGGCTACTGGGTTCATAATATTCAGTACTGCTTCAAGATAACCTATATGGGAACTTCAATTTTTTTATTATTGTAAGCAACTTCTCTATCTTCACAAGATGGGGGTAAGATTGCTTACACATCACCTTGGGCAGACCCAGACCCAGTTACACTAGGTATGATGTTGCTGCTGCATCAGGGTGGAGTATAATCCACCTATGTTGAGCATTTGTTGAACTTTTAAACTCTTGCATGCACCTGCCTGAATTTCCAAATTCCGGGGTAGCAAGCTTGGTTGAGGATATGTTGGAGCTTCTGGATAGGATGTTTGAGCCTAGAGATTGCTGAACTAATGATTGTTGTCTTTTGGTGGGCCTCTATTGAGATACAACCCTATCAAGTTCTTTACCTCTGTTTATGTTCCTGTTCCTGTTGAGATGCATGGCATTGCAGTCTCAGATTAATCGCTAAGGTTCCCAGCTGTTTTAATTTTAGGATGTAGCTTGAATGGGACATCAGTCTCTTAAGAAAGGTTGAACTTGGAAGAAAAAATTGGTATAACCGATATTTTGTGGCACTTGTTTTTGAAAGGCAAGAAGTGGTTGAAGATGAAGTTACCAAACAATCATTCATTAATCCCGATTCTTCTATTATTCAGTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTCTTTGCATCTTTGGGAATAGAGTTTATCTAAGAAGTACTACCACATGTACCTATGGTTTTGATTTTGGTAGCAGTTGTAACATATAAACTTTTAAATAGTCTTGTTTCTCTTCTCTCTTCTCTAATTGAAATCAGTTGTGCATTGTGTTTTCACATCTTTCTTCTTTTTATCCAGGCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACGGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGGGTGAGCTCTTTTTCTGTTTGTACTTGTCTAGATGGTGTTTTTGGCCATAACTTTACATGCAAATACAGCACTATTGAAAAAAAAAATTCACTTATAAATCTTCCAACCTTTTTTCCAAGTGATACAATTCCAACTTACAAAGACTCGTTCTCCAACTTCCGACTTCAATAACTTGTTTTGTTTTGAGGTTTCAACTGAATATTGTCCGAACGTCTGCTAAATGATTTTTGTATGCTGTTGTTTTGCAGAAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGTACAGCTAACTGAGGCTAGTTTGAGCTACCTATCTTCCACATCTGTGTTTTGTTATTTGCAAATAAAAGTTGTTGCATGTACTAGAGGAGATGTACATTGTGTAGTTAAAAAAACATAAATATCAGGTATGCTGAAGCTCAGATGTCAAATATTCGAGATGGCTGTGCAGATGGAAGTTGAGGTGTAAAAAAAAAGGAAGATAAAAAAGGCGAGGTAGTTTTACATCGACGCGACTGTACAAATGTTGCCTTTTGTTGGAGAGTTGATGTTTTAGGGGAAGGTCAGAATTTTATTGTATGGTATTTCGACAATTTTATTTCTTTTATGGCCAAGTATATTCTACTTCATCTCAAA</genome_strand>
        <mrna_strand>TGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGAAAATGAGCCTCTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACGGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGG........................................................................................................................................................................................................................................................AAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGTACAGCTAACTGAGGCTAGTTTGAGCTACCTATCTTCCACATCTGTGTTTTGTTATTTGCAAATAAAAGTTGTTGCATGTACTAGAGGAGATGTACATTGTGTAGTTAAAAAAACATAAATATCAGGTATGCTGAAGCTCAGATGTCAAATATTCGAGATGGCTGTGCAGATGGAAGTTGAGGTGTAAAAAAAAAGGAAGATAAAAAAGGCGAGGTAGTTTTACATCGACGCGACTGTACAAATGTTGCCTTTTGTTGGAGAGTTGATGTTTTAGGGGAAGGTCAGAATTTTATTGTATGGTATTTCGACAATTTTATTTCTTTTATGGCCAAGTATATTCTACTTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349096" ref_strand="+" ref_description="SGN-E349096 [cTOS-2-D13]">
      <seq>tgtttaactttctgtaattccagtgaacgacagctattggtgaatgagatgcttggcacaactgatgaaaatgagcctcttcaagctatgatgaaagatcagtttgcaaattatgtagtacagaaggttctggaaacttgtagtgatcaacaacgcaagctgatcatgtcgagaattaaagttcacttgaatgctctgaataaatatacttacggaaagcatattgtctcccgtgttgaaaagctagatgctgctggggaaaggaggattgctgcgcaatccctaagtactgcttactcatgtaggaaaagaaagttgtgcagctaactgatgctagtttgagctacctatcttccacatctgcgttgtgttatttgcaaataaaagttgtcgcatgtactataggagatgtacattgtgtatctaaaaaaacataaatatcagcgtgtgctgaagctcagatgtcaaatattcgagatggctgagcatatggaatttgatgtgtaaaaaataaggaagattaaaaaggcgaggtagttttacatcgacgcgactgtacaaatgttgcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17486" stop="20319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17786" g_stop="17869" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17870" i_stop="19285" i_length="1416">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19286" g_stop="19460" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="259" r_length="175" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19461" i_stop="19708" i_length="248">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19709" g_stop="20019" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="571" r_length="312" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E349096" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17786" e_stop="17869"/>
          <exon e_start="19286" e_stop="19460"/>
          <exon e_start="19709" e_stop="20019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGAAAATGAGCCTCTTCAGGTTTGTCTAAATTTTATTCAACATTTTACCATTTAAGCAGGATTTTGATTTGCATATGGCTACTGGGTTCATAATATTCAGTACTGCTTCAAGATAACCTATATGGGAACTTCAATTTTTTTATTATTGTAAGCAACTTCTCTATCTTCACAAGATGGGGGTAAGATTGCTTACACATCACCTTGGGCAGACCCAGACCCAGTTACACTAGGTATGATGTTGCTGCTGCATCAGGGTGGAGTATAATCCACCTATGTTGAGCATTTGTTGAACTTTTAAACTCTTGCATGCACCTGCCTGAATTTCCAAATTCCGGGGTAGCAAGCTTGGTTGAGGATATGTTGGAGCTTCTGGATAGGATGTTTGAGCCTAGAGATTGCTGAACTAATGATTGTTGTCTTTTGGTGGGCCTCTATTGAGATACAACCCTATCAAGTTCTTTACCTCTGTTTATGTTCCTGTTCCTGTTGAGATGCATGGCATTGCAGTCTCAGATTAATCGCTAAGGTTCCCAGCTGTTTTAATTTTAGGATGTAGCTTGAATGGGACATCAGTCTCTTAAGAAAGGTTGAACTTGGAAGAAAAAATTGGTATAACCGATATTTTGTGGCACTTGTTTTTGAAAGGCAAGAAGTGGTTGAAGATGAAGTTACCAAACAATCATTCATTAATCCCGATTCTTCTATTATTCAGTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTCTTTGCATCTTTGGGAATAGAGTTTATCTAAGAAGTACTACCACATGTACCTATGGTTTTGATTTTGGTAGCAGTTGTAACATATAAACTTTTAAATAGTCTTGTTTCTCTTCTCTCTTCTCTAATTGAAATCAGTTGTGCATTGTGTTTTCACATCTTTCTTCTTTTTATCCAGGCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACGGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGGGTGAGCTCTTTTTCTGTTTGTACTTGTCTAGATGGTGTTTTTGGCCATAACTTTACATGCAAATACAGCACTATTGAAAAAAAAAATTCACTTATAAATCTTCCAACCTTTTTTCCAAGTGATACAATTCCAACTTACAAAGACTCGTTCTCCAACTTCCGACTTCAATAACTTGTTTTGTTTTGAGGTTTCAACTGAATATTGTCCGAACGTCTGCTAAATGATTTTTGTATGCTGTTGTTTTGCAGAAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGTACAGCTAACTGAGGCTAGTTTGAGCTACCTATCTTCCACATCTGTGTTTTGTTATTTGCAAATAAAAGTTGTTGCATGTACTAGAGGAGATGTACATTGTGTAGTTAAAAAAACATAAATATCAG-GTATGCTGAAGCTCAGATGTCAAATATTCGAGATGGCTGTGCAGATGGAAGTTGAGGTGTAAAAAAAAAGGAAGATAAAAAAGGCGAGGTAGTTTTACATCGACGCGACTGTACAAATGTTGCCTT</genome_strand>
        <mrna_strand>TGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGAAAATGAGCCTCTTCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAACAACGCAAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAATAAATATACTTACGGAAAGCATATTGTCTCCCGTGTTGAAAAGCTAGATGCTGCTGGGG........................................................................................................................................................................................................................................................AAAGGAGGATTGCTGCGCAATCCCTAAGTACTGCTTACTCATGTAGGAAAAGAAAGTTGTGCAGCTAACTGATGCTAGTTTGAGCTACCTATCTTCCACATCTGCGTTGTGTTATTTGCAAATAAAAGTTGTCGCATGTACTATAGGAGATGTACATTGTGTATCTAAAAAAACATAAATATCAGCGTGTGCTGAAGCTCAGATGTCAAATATTCGAGATGGCTGAGCATATGGAATTTGATGTGTAAAAAATAAGGAAGATTAAAAAGGCGAGGTAGTTTTACATCGACGCGACTGTACAAATGTTGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378828" ref_strand="+" ref_description="SGN-E378828 [TUS-1-N20]">
      <seq>atgaaaatgagcctcttcaggctatgatgaaagatcagtttgcaaattatgtggtacggaggttctggaaacttgtagtgacagcnnacgcgcagactgatcatgtcgagaattaaagttcacttgaatgctctgaagaaatatacttacggaaagcatattgtcgcccgtgttgaaaagctagttgctgctggggaaaggaggattgctgcgcagtccctaagtactgcttagtcatgtaggaaaagaaagttgtacagctaactgaggctagtttgagctacctatcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17550" stop="20104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17850" g_stop="17869" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17870" i_stop="19285" i_length="1416">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19286" g_stop="19460" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="196" r_length="176" r_score="0.937"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19461" i_stop="19708" i_length="248">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19709" g_stop="19804" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="292" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E378828" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17850" e_stop="17869"/>
          <exon e_start="19286" e_stop="19460"/>
          <exon e_start="19709" e_stop="19804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAAATGAGCCTCTTCAGGTTTGTCTAAATTTTATTCAACATTTTACCATTTAAGCAGGATTTTGATTTGCATATGGCTACTGGGTTCATAATATTCAGTACTGCTTCAAGATAACCTATATGGGAACTTCAATTTTTTTATTATTGTAAGCAACTTCTCTATCTTCACAAGATGGGGGTAAGATTGCTTACACATCACCTTGGGCAGACCCAGACCCAGTTACACTAGGTATGATGTTGCTGCTGCATCAGGGTGGAGTATAATCCACCTATGTTGAGCATTTGTTGAACTTTTAAACTCTTGCATGCACCTGCCTGAATTTCCAAATTCCGGGGTAGCAAGCTTGGTTGAGGATATGTTGGAGCTTCTGGATAGGATGTTTGAGCCTAGAGATTGCTGAACTAATGATTGTTGTCTTTTGGTGGGCCTCTATTGAGATACAACCCTATCAAGTTCTTTACCTCTGTTTATGTTCCTGTTCCTGTTGAGATGCATGGCATTGCAGTCTCAGATTAATCGCTAAGGTTCCCAGCTGTTTTAATTTTAGGATGTAGCTTGAATGGGACATCAGTCTCTTAAGAAAGGTTGAACTTGGAAGAAAAAATTGGTATAACCGATATTTTGTGGCACTTGTTTTTGAAAGGCAAGAAGTGGTTGAAGATGAAGTTACCAAACAATCATTCATTAATCCCGATTCTTCTATTATTCAGTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTCTTTGCATCTTTGGGAATAGAGTTTATCTAAGAAGTACTACCACATGTACCTATGGTTTTGATTTTGGTAGCAGTTGTAACATATAAACTTTTAAATAGTCTTGTTTCTCTTCTCTCTTCTCTAATTGAAATCAGTTGTGCATTGTGTTTTCACATCTTTCTTCTTTTTATCCAGGCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCA-ACGCG-AG-CTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACGGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGGGTGAGCTCTTTTTCTGTTTGTACTTGTCTAGATGGTGTTTTTGGCCATAACTTTACATGCAAATACAGCACTATTGAAAAAAAAAATTCACTTATAAATCTTCCAACCTTTTTTCCAAGTGATACAATTCCAACTTACAAAGACTCGTTCTCCAACTTCCGACTTCAATAACTTGTTTTGTTTTGAGGTTTCAACTGAATATTGTCCGAACGTCTGCTAAATGATTTTTGTATGCTGTTGTTTTGCAGAAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGTACAGCTAACTGAGGCTAGTTTGAGCTACCTATCTTC</genome_strand>
        <mrna_strand>ATGAAAATGAGCCTCTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGATGAAAGATCAGTTTGCAAATTATGTGGTAC-GGAGGTTCTGGAAACTTGTAGTGA-CAGCNNACGCGCAGACTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACGGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGG........................................................................................................................................................................................................................................................AAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGTACAGCTAACTGAGGCTAGTTTGAGCTACCTATCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700489" ref_strand="+" ref_description="SGN-E700489 [FA13BB03]">
      <seq>cctatagattgctaaactaatgattgttgtcttttggtgggcctctattgagatacaaccctatcaagttctttacctctgtttatgttcctgttcctgttgagatgcatggcattgcagtctcagattaatcgctaaggttcccagctgttttaattttaggatgtagcttgaatgggacatcagtctcttaagtaaggttgaacttggaagaaaaaattggtataaccgatattttgtggcacttgtttttgaaaggcaagaagtggttgaagatgaagttaccaaacaatcattcatcaatcccgattcttctattattcagtttcctagctccaaaaattaacccagaaaaacctcaaaaccaactgttgccgaattgaagataagatattggactctcttgctttattcaaactaaaatcatggattatgttgaattcaaaataagcacaaaagtgatatgtgttggctataatttctaaacttctcttagaactagctgcactgtgaccagcattgacttgcccttgacagttgctaaaaggcatttgaaactgaggcaaatggtgatgttgcataagtttttggttgttaatttattcaccgttccaaacatatcatggttggcgggcagaggtagctgtctcttctgacctttatattttgtttgtgctttttgacatcttgacatgtttggtcccatttaaacaaaactactcgactttggatgcttagactgatgtgttggaactcttctcaaaaaaagatggaagcagtggggtgggtgttcgcccggagtgttttctctatgtcaagataccccgagttttctatataattattggacctcaacaatatcatgctataactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17938" stop="19411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18238" g_stop="19111" g_length="874"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="874" r_length="874" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E700489" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18238" e_stop="19111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGAGATTGCTGAACTAATGATTGTTGTCTTTTGGTGGGCCTCTATTGAGATACAACCCTATCAAGTTCTTTACCTCTGTTTATGTTCCTGTTCCTGTTGAGATGCATGGCATTGCAGTCTCAGATTAATCGCTAAGGTTCCCAGCTGTTTTAATTTTAGGATGTAGCTTGAATGGGACATCAGTCTCTTAAGAAAGGTTGAACTTGGAAGAAAAAATTGGTATAACCGATATTTTGTGGCACTTGTTTTTGAAAGGCAAGAAGTGGTTGAAGATGAAGTTACCAAACAATCATTCATTAATCCCGATTCTTCTATTATTCAGTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTC</genome_strand>
        <mrna_strand>CCTATAGATTGCTAAACTAATGATTGTTGTCTTTTGGTGGGCCTCTATTGAGATACAACCCTATCAAGTTCTTTACCTCTGTTTATGTTCCTGTTCCTGTTGAGATGCATGGCATTGCAGTCTCAGATTAATCGCTAAGGTTCCCAGCTGTTTTAATTTTAGGATGTAGCTTGAATGGGACATCAGTCTCTTAAGTAAGGTTGAACTTGGAAGAAAAAATTGGTATAACCGATATTTTGTGGCACTTGTTTTTGAAAGGCAAGAAGTGGTTGAAGATGAAGTTACCAAACAATCATTCATCAATCCCGATTCTTCTATTATTCAGTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGGACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTGGCTATAATTTCTAAACTTCTCTTAGAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTATATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTAAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAAGCAGTGGGGTGGGTGTTCGCCCGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTGGACCTCAACAATATCATGCTATAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389770" ref_strand="+" ref_description="SGN-E389770 [TUS-4-D4]">
      <seq>agtttcctagctccaaaaattaacccagaaaaacctcaaaaccaactgttgccgaattgaagataagatattgaactctcttgctttattcaaactaaaatcatggattatgttgaattcaaaataagcacaaaagtgatatgtgttagctataatttctaaacttctcttaaaactagctgcactgtgaccagcattgacttgcccttgacagttgctaaaaggcatttgaaactgaggcaaatggtgatgttgcataagtttttggttgttaatttattcaccgttccaaacatatcatggttggcgggcagaggtagctgtctcttctgacctttgtattttgtttgtgctttttgacatcttgacatgtttggtcccattttaacaaaactactcgactttggatgcttagactgatgtgttggaactcttctcaaaaaaagatggagcaagtggggtgggtgttcgcctggagtgttttctctatgtcaagataccccgagttttctatataattattttacctcaacaatatcatgctattactctttgcatctttgggaatagagtttatctaagaagtactaccacatgtacctatggttttgattttggtagcagttgtaacatataaacttttaaatagncttgtttctcttctctcttctctaattgaaatcagttgtgcattgtgttttcacatctttcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18261" stop="19577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18561" g_stop="19277" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="717" r_length="717" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E389770" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18561" e_stop="19277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTCTTTGCATCTTTGGGAATAGAGTTTATCTAAGAAGTACTACCACATGTACCTATGGTTTTGATTTTGGTAGCAGTTGTAACATATAAACTTTTAAATAGTCTTGTTTCTCTTCTCTCTTCTCTAATTGAAATCAGTTGTGCATTGTGTTTTCACATCTTTCTTCTTT</genome_strand>
        <mrna_strand>AGTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTCTTTGCATCTTTGGGAATAGAGTTTATCTAAGAAGTACTACCACATGTACCTATGGTTTTGATTTTGGTAGCAGTTGTAACATATAAACTTTTAAATAGNCTTGTTTCTCTTCTCTCTTCTCTAATTGAAATCAGTTGTGCATTGTGTTTTCACATCTTTCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550164" ref_strand="+" ref_description="SGN-E550164 [TUS-5-D4]">
      <seq>agtttcctagctccaaaaattaacccagaaaaacctcaaaaccaactgttgccgaattgaagataagatattgaactctcttgctttattcaaactaaaatcatggattatgttgaattcaaaataagcacaaaagtgatatgtgttagctataatttctaaacttctcttaaaactagctgcactgtgaccagcattgacttgcccttgacagttgctaaaaggcatttgaaactgaggcaaatggtgatgttgcataagtttttggttgttaatttattcaccgttccaaacatatcatggttggcgggcagaggtagctgtctcttctgacctttgtattttgtttgtgctttttgacatcttgacatgtttggtcccattttaacaaaactactcgactttggatgcttagactgatgtgttggaactcttctcaaaaaaagatggagcaagtggggtgggtgttcgcctggagtgttttctctatgtcaagataccccgagttttctatataattattttacctcaacaatatcatgctattactctttgcatctttgggaataagttttatctaagaagtactaccacatgtacctatggttttgattttggtagcagttgtaacatataaacttttaaatagncttgtttctcttctctcttctctaatngaaatcagttgtgcattgtgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18261" stop="19561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18561" g_stop="19261" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E550164" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18561" e_stop="19261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTCTTTGCATCTTTGGGAATAGAGTTTATCTAAGAAGTACTACCACATGTACCTATGGTTTTGATTTTGGTAGCAGTTGTAACATATAAACTTTTAAATAGTCTTGTTTCTCTTCTCTCTTCTCTAATTGAAATCAGTTGTGCATTGTGTTTT</genome_strand>
        <mrna_strand>AGTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTCTTTGCATCTTTGGGAATAAGTTTTATCTAAGAAGTACTACCACATGTACCTATGGTTTTGATTTTGGTAGCAGTTGTAACATATAAACTTTTAAATAGNCTTGTTTCTCTTCTCTCTTCTCTAATNGAAATCAGTTGTGCATTGTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235530" ref_strand="+" ref_description="SGN-E235530 [cLED-11-J17]">
      <seq>gtttcctagctccaaaaattaacccagaaaaacctcaaaaccaactgttgccgaattgaagataagatattgaactctcttgctttattcaaactaaaatcatggattatgttgaattcaaaataagcacaaaagtgatatgtgttagctataatttctaaacttctcttaaaactagctgcactgtgaccagcattgacttgcccttgacagttgctaaaaggcatttgaaactgaggcaaatggtgatgttgcataagtttttggttgttaatttattcaccgttccaaacatatcatggttggcgggcagaggtagctgtctcttctgacctttgtattttgtttgtgctttttgacatcttgacatgtttggtcccattttaacaaaactactcgactttggatgcttagactgatgtgttggaactcttctcaaaaaaagatggagcaagtggggtgggtgttcgcctggagtgttttctctatgtcaagataccccgagttttctatataattattttacctcaacaatatcatgctattactctttgcatctttgggaatagagtttatctaagaagtactaccacatgtacctatggttttgattttggtagcagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18262" stop="19486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18562" g_stop="19186" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E235530" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18562" e_stop="19186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTCTTTGCATCTTTGGGAATAGAGTTTATCTAAGAAGTACTACCACATGTACCTATGGTTTTGATTTTGGTAGCAGTT</genome_strand>
        <mrna_strand>GTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTCTTTGCATCTTTGGGAATAGAGTTTATCTAAGAAGTACTACCACATGTACCTATGGTTTTGATTTTGGTAGCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550415" ref_strand="+" ref_description="SGN-E550415 [TUS-5-D4](-)">
      <seq>cagttgtgcattgtgttttcacatctttcttctttttatccaggctatgatgaaagatcagtttgcaaattatgtagtacagaaggttctggaaacttgtagtgatcagcaacgcgagctgatcatgtcgagaattaaagttcacttgaatgctctgaagaaatatacttacggaaagcatattgtcgcccgtgttgaaaagctagttgctgctggggaaaggaggattgctgcgcagtccctaagtactgcttagtcatgtaggaaaagaaagttgtacagctaactgaggctagtttgagctacctatcttccacatctgtgttttgttatttgcaaataaaagttgttgcatgtactagaggagatgtacattgtgtagttaaaaaaacataaatatcaggtatgctgaagctcagatgtcaaatattcgagatggctgtgcagatggaagttgaggtgtaaaaaaaaaggaagataaaaaaggcgaggtagttttacatcgacgcgactgtacaaatgttgccttttgttggagagttgatgttttaggggaaggtcagaattttattgtatggtatttcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18943" stop="20377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19243" g_stop="19460" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19461" i_stop="19708" i_length="248">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19709" g_stop="20077" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="587" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E550415" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19243" e_stop="19460"/>
          <exon e_start="19709" e_stop="20077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTGTGCATTGTGTTTTCACATCTTTCTTCTTTTTATCCAGGCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACGGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGGGTGAGCTCTTTTTCTGTTTGTACTTGTCTAGATGGTGTTTTTGGCCATAACTTTACATGCAAATACAGCACTATTGAAAAAAAAAATTCACTTATAAATCTTCCAACCTTTTTTCCAAGTGATACAATTCCAACTTACAAAGACTCGTTCTCCAACTTCCGACTTCAATAACTTGTTTTGTTTTGAGGTTTCAACTGAATATTGTCCGAACGTCTGCTAAATGATTTTTGTATGCTGTTGTTTTGCAGAAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGTACAGCTAACTGAGGCTAGTTTGAGCTACCTATCTTCCACATCTGTGTTTTGTTATTTGCAAATAAAAGTTGTTGCATGTACTAGAGGAGATGTACATTGTGTAGTTAAAAAAACATAAATATCAGGTATGCTGAAGCTCAGATGTCAAATATTCGAGATGGCTGTGCAGATGGAAGTTGAGGTGTAAAAAAAAAGGAAGATAAAAAAGGCGAGGTAGTTTTACATCGACGCGACTGTACAAATGTTGCCTTTTGTTGGAGAGTTGATGTTTTAGGGGAAGGTCAGAATTTTATTGTATGGTATTTCGAC</genome_strand>
        <mrna_strand>CAGTTGTGCATTGTGTTTTCACATCTTTCTTCTTTTTATCCAGGCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACGGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGG........................................................................................................................................................................................................................................................AAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGTACAGCTAACTGAGGCTAGTTTGAGCTACCTATCTTCCACATCTGTGTTTTGTTATTTGCAAATAAAAGTTGTTGCATGTACTAGAGGAGATGTACATTGTGTAGTTAAAAAAACATAAATATCAGGTATGCTGAAGCTCAGATGTCAAATATTCGAGATGGCTGTGCAGATGGAAGTTGAGGTGTAAAAAAAAAGGAAGATAAAAAAGGCGAGGTAGTTTTACATCGACGCGACTGTACAAATGTTGCCTTTTGTTGGAGAGTTGATGTTTTAGGGGAAGGTCAGAATTTTATTGTATGGTATTTCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389508" ref_strand="+" ref_description="SGN-E389508 [TUS-4-D4](-)">
      <seq>agaaatatacttacggaaagcatattgtcgcccgtgttgaaaagctagttgctgctggggaaaggaggattgctgcgcagtccctaagtactgcttagtcatgtaggaaaagaaagttgtacagctaactgaggctagtttgagctacctatcttccacatctgtgttttgttatttgcaaataaaagttgttgcatgtactagaggagatgtacattgtgtagttaaaaaaacataaatatcaggtatgctgaagctcagatgtcaaatattcgagatggctgtgcagatggaagttgaggtgtaaaaaaaaaggaagataaaaaaggcgaggtagttttacatcgacgcgactgtacaaatgttgccttttgttggagagttgatgttgtaaaggaaggtcagaattttattgtatggtatttcgacaattttatttcttttatgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19101" stop="20395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19401" g_stop="19460" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19461" i_stop="19708" i_length="248">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19709" g_stop="20097" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="449" r_length="389" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E389508" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19401" e_stop="19460"/>
          <exon e_start="19709" e_stop="20097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATATACTTACGGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGGGTGAGCTCTTTTTCTGTTTGTACTTGTCTAGATGGTGTTTTTGGCCATAACTTTACATGCAAATACAGCACTATTGAAAAAAAAAATTCACTTATAAATCTTCCAACCTTTTTTCCAAGTGATACAATTCCAACTTACAAAGACTCGTTCTCCAACTTCCGACTTCAATAACTTGTTTTGTTTTGAGGTTTCAACTGAATATTGTCCGAACGTCTGCTAAATGATTTTTGTATGCTGTTGTTTTGCAGAAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGTACAGCTAACTGAGGCTAGTTTGAGCTACCTATCTTCCACATCTGTGTTTTGTTATTTGCAAATAAAAGTTGTTGCATGTACTAGAGGAGATGTACATTGTGTAGTTAAAAAAACATAAATATCAGGTATGCTGAAGCTCAGATGTCAAATATTCGAGATGGCTGTGCAGATGGAAGTTGAGGTGTAAAAAAAAAGGAAGATAAAAAAGGCGAGGTAGTTTTACATCGACGCGACTGTACAAATGTTGCCTTTTGTTGGAGAGTTGATGTTTTAGGGGAAGGTCAGAATTTTATTGTATGGTATTTCGACAATTTTATTTCTTTTATGGC</genome_strand>
        <mrna_strand>AGAAATATACTTACGGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGG........................................................................................................................................................................................................................................................AAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGTACAGCTAACTGAGGCTAGTTTGAGCTACCTATCTTCCACATCTGTGTTTTGTTATTTGCAAATAAAAGTTGTTGCATGTACTAGAGGAGATGTACATTGTGTAGTTAAAAAAACATAAATATCAGGTATGCTGAAGCTCAGATGTCAAATATTCGAGATGGCTGTGCAGATGGAAGTTGAGGTGTAAAAAAAAAGGAAGATAAAAAAGGCGAGGTAGTTTTACATCGACGCGACTGTACAAATGTTGCCTTTTGTTGGAGAGTTGATGTTGTAAAGGAAGGTCAGAATTTTATTGTATGGTATTTCGACAATTTTATTTCTTTTATGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478599" ref_strand="+" ref_description="SGN-E478599 [cSTD-6-G13]">
      <seq>atcaaatgccagcagatatagaatttcattattttttaaaaacacaaattttttcatgcaaaatatagtaactaaatagaaagagttagcaattcatctgctatctctttccaaaaataaaataaaattcatatctcatggctccaactcttacttcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcactgtttctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgctacctgctagcacgaacacatcttctggtttgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgatcttggtgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgcctgaatgcagttgcatccacatttcaagatgcagaatcgattgcaaaagcaatcggaaatgctagcaaagttgtggttactattggtaagggagaaaacggtcctgcgactgaagtcccacaacagatgctgtacaagttatacaagctgcacaattagcntggtgtggggcatgtggccatagtctatgatgaatctactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43990" stop="46405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44235" g_stop="44536" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44537" i_stop="45334" i_length="798">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45335" g_stop="45567" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="527" r_length="233" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45568" i_stop="45877" i_length="310">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45878" g_stop="46106" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="756" r_length="229" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E478599" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44235" e_stop="44536"/>
          <exon e_start="45335" e_stop="45567"/>
          <exon e_start="45878" e_stop="46106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAATGCCA-CAGATATACAATTTCATATATTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGC-TGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTC</genome_strand>
        <mrna_strand>ATCAAATGCCAGCAGATATAGAATTTCAT-TA--TTTTTT-AAAAACACAA-A-TTTTTTCATGCAAAATATAGTAACTAAATAGAAAGAGTTAGCAATTCATCTGCTATCTCTTTC--CAAAAATAAAAT-AAAATTCATATCTCATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCACTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGCTACCTGCTAGCACGAACACATCTTCTGGTTTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGATCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGCCTGAATGCAGTTGCATCCACATTTCAAGATGCAGAATCGATTGCAAAAGCAATCGGAAATGCTAGCAAAGTTGTGGTTACTATTGGTAAGGGAGAAAACGGTCCTGCGACTGAAGTC-CCACAACAGATGCTGTACAAGTTATACAAGCTGCACAATTAGCNTGGTGTGGGGCATGTGGCCATAGTCTATGATGAATCTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725934" ref_strand="+" ref_description="SGN-E725934 [LA08DB07]">
      <seq>cgagactagttccaatttcatatattgtttttaaaagagagaacacaattttcatgcaaaatatagtaactaaatagaaagaattagcaattcatctgctatttctttcaaaaaaaataaaataaaaattcatatcctatggctccaactcttacttcaaattcattgctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcattgtttctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattggcttttggaaggcaaagggcaaaggatcctggaacggtgtttgatgctggtgcaactgggcaagctggtatccgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43945" stop="45771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44241" g_stop="44536" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44537" i_stop="45334" i_length="798">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45335" g_stop="45471" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="432" r_length="137" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E725934" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44241" e_stop="44536"/>
          <exon e_start="45335" e_stop="45471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCACAGATATACAATTTCATATATTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATT</genome_strand>
        <mrna_strand>CGAGAC-TAGTTCCAATTTCATATATTGTTTTTAAAAGAGAGAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTGCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGGCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGATGCTGGTGCAACTGGGCAAGCTGGTATCCGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284451" ref_strand="+" ref_description="SGN-E284451 [cLER-16-B4]">
      <seq>agatatacaatttcatatattttttttaaaaaaaaaaacacaattttcatgcaaaatatagtaactaaatagaaagaattagcaattcatctgctatttctttcaaaaaaaataaaataaaaattcatatcctatggctccaactcttacttcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcattgtttctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatttcaagatgcagaatcgattgcaaaggcaatcggaaatgctaacaaagttgtggttactattagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43947" stop="46291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44247" g_stop="44536" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44537" i_stop="45334" i_length="798">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45335" g_stop="45567" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="523" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45568" i_stop="45877" i_length="310">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45878" g_stop="45991" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="637" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E284451" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44247" e_stop="44536"/>
          <exon e_start="45335" e_stop="45567"/>
          <exon e_start="45878" e_stop="45991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATATACAATTTCATATATTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGT</genome_strand>
        <mrna_strand>AGATATACAATTTCATATATTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348094" ref_strand="+" ref_description="SGN-E348094 [cTOF-31-D24]">
      <seq>acaatttcatatattttttttaaaaaaaaaaaacaattttcatgcaaaatatagtaactaaatagaaagaattagcaattcatctgctatttctttcaaaaaaaataaaataaaaattcatatcctatggctccaactcttacttcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcattgtttctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggntgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtaaaaacgtctgaatgcagttgcatcatcatttcaagatgcagaatcgattgcaaaggcaatcggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43953" stop="46264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44253" g_stop="44536" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44537" i_stop="45334" i_length="798">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45335" g_stop="45567" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="517" r_length="234" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45568" i_stop="45877" i_length="310">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45878" g_stop="45964" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="604" r_length="87" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E348094" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44253" e_stop="44536"/>
          <exon e_start="45335" e_stop="45567"/>
          <exon e_start="45878" e_stop="45964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTTCATATATTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGG-TGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAAT</genome_strand>
        <mrna_strand>ACAATTTCATATATTTTTTTTAAAAAAAAAAA-ACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGNTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTAAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731810" ref_strand="+" ref_description="SGN-E731810 [LA28BA06]">
      <seq>caatttcatatattttttttaaaaaaaaaaacacaattttcatgcaaaatatagtaactaaatagaaagaattagcaattcatctgctatttctttcaaaaaaaataaaataaaaattcatatcctatggctccaactcttacttcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcattgtttctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcaaagctggagtttctgaccttggtgctgcacaaaagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatttcaagatgcagaatcgattgcaaaggcaatcggaaatgctaacaaagttgtggttactattagtaagggagaggacggtcctgcgactgaagtcaccacaacagatgctgtacaagttatagaagcagcacaattagctggcgttggacatgtggccatagtctatgatgaatcttctccagtaggctctacatacaatgtgctcgacggaattacatcattcttcaacaatctgttctcaaaatctcaaccgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43954" stop="46484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44254" g_stop="44536" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44537" i_stop="45334" i_length="798">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45335" g_stop="45567" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="516" r_length="233" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45568" i_stop="45877" i_length="310">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45878" g_stop="46184" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="823" r_length="307" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E731810" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44254" e_stop="44536"/>
          <exon e_start="45335" e_stop="45567"/>
          <exon e_start="45878" e_stop="46184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTCATATATTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGA</genome_strand>
        <mrna_strand>CAATTTCATATATTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAAAGCTGGAGTTTCTGACCTTGGTGCTGCACAAAAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727027" ref_strand="+" ref_description="SGN-E727027 [LA13CB01]">
      <seq>caatttcatatattttttttaaaaaaaaaaacacaattttcatgcaaaatatagtaactaaatagaaagaattagcaattcatctgctatttctttcaaaaaaaataaaataaaaattcatatcctatggctccaactcttacttcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcattgtttctgctaaaaaatctggacaaaatcaaaaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcaaagctggagtttctgaccttggtgctgcacaaaagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatttcaagatgcaaaatcgattgcaaaggcaatcggaaatgctaacaaagttgtggttactattagtaagggagaggacggtcctgcgactgaagtcaccacaacagatgctgtacaagttatagaagcagcacaattagctggcgttggacatgtggccatagtctatgatgaatcttctccagtaggctctacatacaatgtgctcgacggaattacatcattcttcaacaatctgttctcaaaatctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43954" stop="46476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44254" g_stop="44536" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44537" i_stop="45334" i_length="798">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45335" g_stop="45567" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="516" r_length="233" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45568" i_stop="45877" i_length="310">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45878" g_stop="46176" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="815" r_length="299" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E727027" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44254" e_stop="44536"/>
          <exon e_start="45335" e_stop="45567"/>
          <exon e_start="45878" e_stop="46176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTCATATATTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCA</genome_strand>
        <mrna_strand>CAATTTCATATATTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAAAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAAAGCTGGAGTTTCTGACCTTGGTGCTGCACAAAAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAAAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731107" ref_strand="+" ref_description="SGN-E731107 [LA26AF10]">
      <seq>atttcatatattttttttaaaaaaaaaaacacaattttcatgcaaaatatagtaactaaatagaaagaattagcaattcatctgctatttctttcaaaaaaaataaaataaaaattcatatcctatggctccaactcttacttcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcattgtttctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcgcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggggctgcacaaaagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatttcaagatgcagaatcgattgcaaaggcaatcggaaatgctaacaaagttgtggttactattagtaagggagaggacggtcctgcgactgaagtcaccacaacagatgctgtacaagttatagaagcagcacaattagctggcgttggacatgtggccatagtctatgatgaatcttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43956" stop="46407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44256" g_stop="44536" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44537" i_stop="45371" i_length="835">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45372" g_stop="45567" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="477" r_length="196" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45568" i_stop="45877" i_length="310">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45878" g_stop="46107" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="707" r_length="230" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E731107" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44256" e_stop="44536"/>
          <exon e_start="45372" e_stop="45567"/>
          <exon e_start="45878" e_stop="46107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATATATTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCC</genome_strand>
        <mrna_strand>ATTTCATATATTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGGGCTGCACAAAAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746251" ref_strand="-" ref_description="SGN-E746251 [GI|47104803]">
      <seq>ttttttttttttttttttttcatatattttttttaaaaaaaaaaacacaaaattttcatgcaaaatatagtaactaaatagaaagaattagcaattcatctgctatttctttccaaaaataaaataaaaattcatatcctatggctccaactcttacttcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcattgtttctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttgctgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgcctgaatgcagttgcatccacatttcaagatgcagaatcgattgcaaaagcaataggaaatgctagcaaagttgtggttactattggtaagggagaggacggtcctgcgactgaagtcaccacaacagatgctgtacaagttatagaagcagcacaattagctggcgttggacatgtggcgatagtctatgatgaatcttctccagtaggctcaacatacaatgtgctcgatggaattacatcattcttcaacaatctgttctcaaaatctcaaccgttgacgatagcagagtttctgcagaagatagtagagacagacctaagctatacactcataaaaaccagattaactgacgatttctcccctgagagctcatacaaaatcgtcgtttcagctgaaggaagtgctggtgctgacgcctataaagtggggaagtctcagatagctaagctcgttgtagatgttttctccaacacagcggtggcagaaaataaggttgtcgaagtctttgctgatccatcagcaccaccaaagacagtggatgaactttttagcgtcattcctgaggatggtcggagaaaggcctatgcagaagcccttgaaaaatcgaaagctgaggaagaagctcgaggagttgctgaagcatccaagaggcaggaacaagaagcaaagaagctcgaaaagaaagaagcaaaggctgctgctaccatcgcaaaggaacctgaagagaaggcgtcatcaccttccgttccttctgttgaaagtctactagacaaagcaaaagactttagtacaggattttcatttgaaaaactcagctcacagctcaaatcagctgttgaaaaggctaacgaggaatcagacgctcaagttgctaccgttaggggacaggccaaggctaaaaatttgcctgctcagaaagcagtggtgaaaactactccaaggaaaccatctgcttcgaaaacgaacaaggaggctccgaaaccagctaaacaaacagaggttgcttcaacagagaagaggaagatttttggtggactgtttcaacaagaaaccatctatgttgatgactaagatgaatgaataagagaaagccaaaatattaattttctatatatcattttagcctaattatgaggttaaaacaatggtttaactgaggctgagtaagaaagcatgtaaatccctgcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43957" stop="48365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44257" g_stop="44536" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="297" r_length="280" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44537" i_stop="45334" i_length="798">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45335" g_stop="45567" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="530" r_length="233" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45568" i_stop="45877" i_length="310">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45878" g_stop="46330" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="983" r_length="453" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46331" i_stop="46499" i_length="169">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46500" g_stop="46568" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="984" r_stop="1052" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46569" i_stop="46826" i_length="258">
            <donor d_prob="0.368" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46827" g_stop="46885" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1053" r_stop="1111" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46886" i_stop="47425" i_length="540">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47426" g_stop="48050" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1112" r_stop="1735" r_length="624" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1748" polyA_stop="1761"/>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E746251" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>1719</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746251" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44257" e_stop="44536"/>
          <exon e_start="45335" e_stop="45567"/>
          <exon e_start="45878" e_stop="46330"/>
          <exon e_start="46500" e_stop="46568"/>
          <exon e_start="46827" e_stop="46885"/>
          <exon e_start="47426" e_stop="48050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATATATTTTTTTTAAAAAAAAAAACAC--AATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAAGTAATGTAATGTATGCAATTTCTTTTAATGTTGAACATGTTCATATATTCTATTGTGGATTTAGTCACATGACATACTCTTCGGTTTATTGTTTCCTTTTTCTGCTTTCTAAGCATGTTAAATAGATCGAAATAAACTAAATCATCTCTTGTTTTATGTGAATTATCAGGTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAGGTAGTGACTGCTCCCCCTTTTAAGTAAAGCAACATTACAACAACAACTACACGTTGGGGTCGGTTATATGAAGTCTCACTCTCATATTGCTCCATTTCAGCCTGTTACATTACAGTAAACGTTGATTACCGGATTTAAATTGACAAGTTTACTAAGATAAGAAAGAGTTCAAATGAAATGAATTTATGCAAATGAACCTGTACTGGTCTTCTTTGGTGTAATGTGGATGTTCAACAACTGGAATTATTTTTTGTACAGGTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAGGTAAATACCTCTTTCCTCAGTTGCTGCATTTCCAAATTTCGGTGATACTAGTGCTCGTAAGAATGATTTCTCTATGTGTTTAACTTCTATGTACTAAATCTGAAAGTAATAAACGAATCATCAGAACATCTAAAAGATAGCTACAAGTAAGCGTCCATAAAAAGTGGGATCAGTAACGGGGAAAATAAGATAAGAGTTCCGGCTATGAAACAGGTTAAACTATTTCTTTTCACTCTGTCAGCAAAACAACAACATGGTCCCAACATAGTGTCGTCTAGGGAAGGTAGAGTGTATGCAAAACTTACCCCTACCTTATAGGTAGAGAGTCCATTTCCGATAAACCATTAGCTCAAGAAAATAAAAAGTTCAAAGAAAGAAATAACGGAAGTACAAGAAGTAACAAATAATAACAAAAACAACAGATAGTAACATAACAAAAACTACAACAAAACAATATTATAATTATATACAAAGATTTATCCTCTTTCTACAAGTTCTGGATGCGATATAATCTAAATGAGTGAAACATTATATACACAGCGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCTACTAGACAAAGCAAAAGACTTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACTAAGATGAATGAATAAGAGAAAGCCAAAATATTAATTTTCTATATATCATTTTAGCCTAATTATGAGGTTACAAACAATGGTTTAACTGAGGCTGAGTGAGAAAGCAT</genome_strand>
        <mrna_strand>TTTCATATATTTTTTTTAAAAAAAAAAACACAAAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTC--CAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGCTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGCCTGAATGCAGTTGCATCCACATTTCAAGATGCAGAATCGATTGCAAAAGCAATAGGAAATGCTAGCAAAGTTGTGGTTACTATTGGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCGATAGTCTATGATGAATCTTCTCCAGTAGGCTCAACATACAATGTGCTCGATGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGGTGCTGACGCCTATAAA.........................................................................................................................................................................GTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTAGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAG..................................................................................................................................................................................................................................................................GTTGTCGAAGTCTTTGCTGATCCATCAGCACCACCAAAGACAGTGGATGAACTTTTTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTCGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCTACTAGACAAAGCAAAAGACTTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTACTCCAAGGAAACCATCTGCTTCGAAAACGAACAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACTAAGATGAATGAATAAGAGAAAGCCAAAATATTAATTTTCTATATATCATTTTAGCCTAATTATGAGGTTA-AAACAATGGTTTAACTGAGGCTGAGTAAGAAAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477274" ref_strand="+" ref_description="SGN-E477274 [cSTB-47-P9]">
      <seq>tttcattttaaaaaaaacacaaaattttcatgcaaaatatagtaactaaatagaaagagttagcaattcatctgctatctctttccaaaaataaaataaaattcatatctcatggctccaactcttacttcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcactgtttctgctaaaaaatctggacaaaatcaagaaactacaaacaattctggcaaccccttcaactttgatttcggtaagttgcctgatgtgacgtctttgatacctgctagcaagaacacatcttctggattgtccttcggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtgatttctaacgatgagtcaaaacgcctgaatgcagttgcatccacatttcaagatgcagaatcgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43966" stop="46246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44266" g_stop="44536" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44537" i_stop="45334" i_length="798">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45335" g_stop="45567" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="501" r_length="233" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45568" i_stop="45877" i_length="310">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45878" g_stop="45946" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="570" r_length="69" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E477274" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44266" e_stop="44536"/>
          <exon e_start="45335" e_stop="45567"/>
          <exon e_start="45878" e_stop="45946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATT</genome_strand>
        <mrna_strand>TTTCATTTTAAAAAAAACACAAAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAGTTAGCAATTCATCTGCTATCTCTTTCCAA-AA-ATAAAAT-AAAATTCATATCTCATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCACTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAAACAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTGCCTGATGTGACGTCTTTGATACCTGCTAGCAAGAACACATCTTCTGGATTGTCCTTCGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTGATTTCTAACGATGAGTCAAAACGCCTGAATGCAGTTGCATCCACATTTCAAGATGCAGAATCGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244213" ref_strand="+" ref_description="SGN-E244213 [cLEF-37-A15]">
      <seq>aaatatagtaactaaatagaaagaattagcaattcatctgctatttctttcaaaaaaaataaaataaaaattcatatcctatggctccaactcttacttcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcattgtttctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44000" stop="45756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44300" g_stop="44536" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44537" i_stop="45334" i_length="798">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45335" g_stop="45456" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="359" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E244213" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44300" e_stop="44536"/>
          <exon e_start="45335" e_stop="45456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAA</genome_strand>
        <mrna_strand>AAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727913" ref_strand="+" ref_description="SGN-E727913 [LA16AE06]">
      <seq>ctacatagaaagaattagcaattcatctgctatttctttcaaaaaaaataaaataaaaattcatatcctatggctccaactcttacttcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcattgtttctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatttcaagatgcagaatcgattgcaaaggcaatcggaaatgctaacaaagttgtggttactattagtaagggagaggacggtcctgcgactgaagtcaccacaacagatgctgtacaagttatagaagcagcacaattagctggcgttggacatgtggccatagtctatgatgaatcttctccagtaggctctacatacaatgtgctcgacggaattacatcattcttcaacaatctgttctcaaaatctcaacggttgacgatagcagagtttctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44011" stop="46502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44311" g_stop="44536" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44537" i_stop="45334" i_length="798">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45335" g_stop="45567" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="459" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45568" i_stop="45877" i_length="310">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45878" g_stop="46202" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="784" r_length="325" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E727913" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44311" e_stop="44536"/>
          <exon e_start="45335" e_stop="45567"/>
          <exon e_start="45878" e_stop="46202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGC</genome_strand>
        <mrna_strand>CTACATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACGGTTGACGATAGCAGAGTTTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404641" ref_strand="+" ref_description="SGN-E404641 [PPC-14-B12]">
      <seq>aagattagcaattcatctgctatctctttccaaaataaaataaaattcatatctcatggctccaactcttacttcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcactgtttctgctaaaaaatctggacaaaatcaagaaactacaaacaattctggcaaccccttcaactttgatttcggtaagttgcctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacagtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaagtaatctctaacgatgagtcaaaacgcctgaatgcagttgcatccacatttcaagatgcagaatcgattgcaaaggcaatcggaaatgctagcaaagntgtggttactattggtaagggagaaaacggtcctgcgactgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44055" stop="46318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44320" g_stop="44536" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44537" i_stop="45334" i_length="798">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45335" g_stop="45567" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="445" r_length="233" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45568" i_stop="45877" i_length="310">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45878" g_stop="46018" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="586" r_length="141" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E404641" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44320" e_stop="44536"/>
          <exon e_start="45335" e_stop="45567"/>
          <exon e_start="45878" e_stop="46018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAA</genome_strand>
        <mrna_strand>AAGA-TTAGCAATTCATCTGCTATCTCTTTC---CAAAATAAAAT-AAAATTCATATCTCATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCACTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAAACAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTGCCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACAGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAA......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGCCTGAATGCAGTTGCATCCACATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAGCAAAGNTGTGGTTACTATTGGTAAGGGAGAAAACGGTCCTGCGACTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288958" ref_strand="+" ref_description="SGN-E288958 [cLES-17-M4]">
      <seq>ttcatctgctatttctttcaaaaaaaaaataaaataaaaattcatatcctatggctccaactcttacttcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcattgtttctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatttcaagatgcagaatcgattgcaaaggcaatcggaaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44032" stop="46267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44332" g_stop="44536" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44537" i_stop="45334" i_length="798">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45335" g_stop="45567" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="440" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45568" i_stop="45877" i_length="310">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45878" g_stop="45967" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="530" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E288958" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44332" e_stop="44536"/>
          <exon e_start="45335" e_stop="45567"/>
          <exon e_start="45878" e_stop="45967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCTGCTATTTCTTTC--AAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCT</genome_strand>
        <mrna_strand>TTCATCTGCTATTTCTTTCAAAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476473" ref_strand="+" ref_description="SGN-E476473 [cSTB-44-P16]">
      <seq>caaaaataaaataaaattcatatctcatggctccaactcttacttcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcactgtttctgctaaaaaatctggacaaaatcaagaaactacaaacaattctggcaaccccttcaactttgatttcggtaagttgcctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacagtgtttgttgctggtgcaactgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44054" stop="45754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44353" g_stop="44536" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44537" i_stop="45334" i_length="798">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45335" g_stop="45454" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="303" r_length="120" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E476473" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44353" e_stop="44536"/>
          <exon e_start="45335" e_stop="45454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGC</genome_strand>
        <mrna_strand>CAAAAATAAAAT-AAAATTCATATCTCATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCACTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAAACAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTGCCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACAGTGTTTGTTGCTGGTGCAACTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725634" ref_strand="+" ref_description="SGN-E725634 [LA04BF01]">
      <seq>taaaaattcatatcctatggctccaactcttacttcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcattgtttctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatttcaagatgcagaaatcgattgcaaggctatcggaaatgctaacaagttgtggttactatttagtagggagaggacgggtctgcgactngagtcacccacacagatgctgtacagtatagagcagcacattagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44064" stop="46367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44364" g_stop="44536" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44537" i_stop="45334" i_length="798">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45335" g_stop="45567" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="406" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45568" i_stop="45877" i_length="310">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45878" g_stop="46067" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="591" r_length="185" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E725634" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44364" e_stop="44536"/>
          <exon e_start="45335" e_stop="45567"/>
          <exon e_start="45878" e_stop="46067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAG-AATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTG</genome_strand>
        <mrna_strand>TAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAAATCGATTGC-AAGGCTATCGGAAATGCTAAC-AAGTTGTGGTTACTATTTAGTAGGGAGAGGACGGGTCTGCGACTNGAGTCACCCACACAGATGCTGTAC-AG-TATAG-AGCAGCAC-ATTAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472436" ref_strand="+" ref_description="SGN-E472436 [cSTB-28-P17]">
      <seq>aaaattcatatctcatggctccaactcttacttcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcactgtgtctgctaaaaaatctggacaaaatcaagaaactacaaacaattctggcaaccccttcaactttgatttcggtaagttgcctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacagtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctggaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgcctgaatgcagttgcatccacatttcaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44066" stop="46235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44366" g_stop="44536" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44537" i_stop="45334" i_length="798">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45335" g_stop="45567" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="405" r_length="234" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45568" i_stop="45877" i_length="310">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45878" g_stop="45935" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="463" r_length="58" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E472436" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44366" e_stop="44536"/>
          <exon e_start="45335" e_stop="45567"/>
          <exon e_start="45878" e_stop="45935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCT-GACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATG</genome_strand>
        <mrna_strand>AAAATTCATATCTCATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCACTGTGTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAAACAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTGCCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACAGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGCCTGAATGCAGTTGCATCCACATTTCAAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310470" ref_strand="+" ref_description="SGN-E310470 [cTOA-9-O13]">
      <seq>ttacttcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcattgtttctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatttcaagatgcagaatcgattgcaaaggcaatcggaaatgctaacaaagttgtggttactattagtaagggagaggacggtcctgcgactgaagtcaccacaacagatgctgtacaagttatagaagcagcacaattagctggcgttggacatgtggccatagtctatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44093" stop="46397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44393" g_stop="44536" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44537" i_stop="45334" i_length="798">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45335" g_stop="45567" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="377" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45568" i_stop="45877" i_length="310">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45878" g_stop="46097" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="597" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E310470" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44393" e_stop="44536"/>
          <exon e_start="45335" e_stop="45567"/>
          <exon e_start="45878" e_stop="46097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATG</genome_strand>
        <mrna_strand>TTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293193" ref_strand="+" ref_description="SGN-E293193 [cLET-12-I23]">
      <seq>tacttcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcattgtttctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatttcaagatgcagaatcgattgcaaaggcaatcggaaatgctaacaaagttgtggttacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44094" stop="46286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44394" g_stop="44536" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44537" i_stop="45334" i_length="798">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45335" g_stop="45567" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="376" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45568" i_stop="45877" i_length="310">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45878" g_stop="45986" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="485" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E293193" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44394" e_stop="44536"/>
          <exon e_start="45335" e_stop="45567"/>
          <exon e_start="45878" e_stop="45986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTA</genome_strand>
        <mrna_strand>TACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282426" ref_strand="+" ref_description="SGN-E282426 [cLER-18-H4]">
      <seq>tcaaattcaatattcctttcaacttcacctcatccaattattatcattcaaaaatccaagattcattgattctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgacttttggaaggcaaagggcaaaggatcctggaacggcgtttgttgctggtgcaactgggcaagctggtattcgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44098" stop="46227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44398" g_stop="44536" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44537" i_stop="45334" i_length="798">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45335" g_stop="45567" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="373" r_length="233" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45568" i_stop="45877" i_length="310">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45878" g_stop="45927" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="423" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E282426" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44398" e_stop="44536"/>
          <exon e_start="45335" e_stop="45567"/>
          <exon e_start="45878" e_stop="45927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATTCATTTCTCCTTTCAACTACACCTCATCCAA-GATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATT</genome_strand>
        <mrna_strand>TCAAATTCAATATTCCTTTCAACTTCACCTCATCCAATTATTATCATTCAAAAATCCAAGATTCATTGATTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGACTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGCGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATTCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313689" ref_strand="+" ref_description="SGN-E313689 [cTOA-12-P8]">
      <seq>tcaaattcatttctcctttcaactacacctcatccaagattatcattcaaaaatccaagattcattgtttctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44098" stop="46227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44398" g_stop="44536" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44537" i_stop="45334" i_length="798">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45335" g_stop="45567" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="372" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45568" i_stop="45877" i_length="310">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45878" g_stop="45927" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="422" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E313689" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44398" e_stop="44536"/>
          <exon e_start="45335" e_stop="45567"/>
          <exon e_start="45878" e_stop="45927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATT</genome_strand>
        <mrna_strand>TCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203096" ref_strand="+" ref_description="SGN-E203096 [cLEB-3-J11]">
      <seq>gcacgagattatcattcaaaaatccaagattcattgtttctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatttcaagatgcagaatcgattgcaaaggcaatcggaaatgctaacaaagttgtggttactattagtaagggagaggacggtcctgcgactgaagtcaccacaacagatgctgtacaagttatagaagcagcacaattagctggcgttggacatgtggccatagtctatgatgaatcttctccagtaggctctacatacaatgtgctcgacggaattacatcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44132" stop="46450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44429" g_stop="44536" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44537" i_stop="45334" i_length="798">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45335" g_stop="45567" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="341" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45568" i_stop="45877" i_length="310">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45878" g_stop="46150" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="614" r_length="273" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E203096" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44429" e_stop="44536"/>
          <exon e_start="45335" e_stop="45567"/>
          <exon e_start="45878" e_stop="46150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTC</genome_strand>
        <mrna_strand>GCACGAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406856" ref_strand="+" ref_description="SGN-E406856 [PPI-5-O17]">
      <seq>tcattcaaaaatccaagaattcactgtttctgctaaaaaatctggacaaaatcaagaaactacaaccaattctggcaaccccttcaactttgatttcggtaagttacctgatgtgacgtctttgcttacctgctagcacgaacacatcttctggtttgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgatcttggtgctgcacaagagctagctcgtctagccgttagctacaangtaatctctaacgatgagtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44140" stop="46199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44440" g_stop="44536" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44537" i_stop="45334" i_length="798">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45335" g_stop="45567" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="332" r_length="234" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45568" i_stop="45877" i_length="310">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45878" g_stop="45899" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="354" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E406856" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44440" e_stop="44536"/>
          <exon e_start="45335" e_stop="45567"/>
          <exon e_start="45878" e_stop="45899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCAAAAATCCAAG-ATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTG-ATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAA</genome_strand>
        <mrna_strand>TCATTCAAAAATCCAAGAATTCACTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGCTTACCTGCTAGCACGAACACATCTTCTGGTTTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGATCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAN......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401342" ref_strand="+" ref_description="SGN-E401342 [PPC-3-J20]">
      <seq>caaaaatccaagattcactgtttctgctaaaaaatctggacaaaatcaagaaactacaaacaattctggcaaccccttcaactttgatttcggtaagttgcctgatgtgacgtctttgatacctgctagcaagaacacatcttctggattgtccttcggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtgatttctaacgatgagtcaaaacgcctgaatgcagttgcatccacatttcaagatgcagaatcgattgcaaaggcaatcggaaatgctagcaaagttgtggttactattggtaagggagaaaacggtcctgcgactgaagtcaccacaacagatgctgtacaagttttacaagctgcacaattagctggtgttgggcatgtggccatagtctatgatgaatcttcttcaggaggctctacatacaatgtgctcgacggaattacatctttcttcaacaatctgttctcaaaatctcaaccgttgacgatagcagagtttctgcagaagatagtggagacagatctaagctatacactcataaaaaccaaattaacagaggatttctcccctgagagctcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44145" stop="46582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44445" g_stop="44536" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44537" i_stop="45334" i_length="798">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45335" g_stop="45567" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="325" r_length="233" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45568" i_stop="45877" i_length="310">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45878" g_stop="46282" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="730" r_length="405" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E401342" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44445" e_stop="44536"/>
          <exon e_start="45335" e_stop="45567"/>
          <exon e_start="45878" e_stop="46282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATAC</genome_strand>
        <mrna_strand>CAAAAATCCAAGATTCACTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAAACAATTCTGGCAACCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTGCCTGATGTGACGTCTTTGATACCTGCTAGCAAGAACACATCTTCTGGATTGTCCTTCGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTGATTTCTAACGATGAGTCAAAACGCCTGAATGCAGTTGCATCCACATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAGCAAAGTTGTGGTTACTATTGGTAAGGGAGAAAACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTTTACAAGCTGCACAATTAGCTGGTGTTGGGCATGTGGCCATAGTCTATGATGAATCTTCTTCAGGAGGCTCTACATACAATGTGCTCGACGGAATTACATCTTTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTGGAGACAGATCTAAGCTATACACTCATAAAAACCAAATTAACAGAGGATTTCTCCCCTGAGAGCTCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313592" ref_strand="+" ref_description="SGN-E313592 [cTOA-12-P10]">
      <seq>aaaaatctggacaaaatcaagaaactacaaccacttctggcaaccccttcaactttgatctcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44174" stop="45732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44474" g_stop="44536" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44537" i_stop="45334" i_length="798">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45335" g_stop="45432" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="161" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E313592" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>161</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44474" e_stop="44536"/>
          <exon e_start="45335" e_stop="45432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTG</genome_strand>
        <mrna_strand>AAAAATCTGGACAAAATCAAGAAACTACAACCACTTCTGGCAACCCCTTCAACTTTGATCTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285596" ref_strand="+" ref_description="SGN-E285596 [cLES-5-A24]">
      <seq>ccccttcaactttgatttcggtaagttacctgatgtgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatttcaagatgcagaatcgattgcaaaggcaatcggaaatgctaacaaagttgtggttactattagtaagggagaggacggtcctgcgactgaagtcaccacaacagatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44217" stop="46336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44517" g_stop="44536" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44537" i_stop="45334" i_length="798">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45335" g_stop="45567" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="253" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45568" i_stop="45877" i_length="310">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45878" g_stop="46036" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="412" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E285596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44517" e_stop="44536"/>
          <exon e_start="45335" e_stop="45567"/>
          <exon e_start="45878" e_stop="46036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTTCAACTTTGATTTCGGTAATGTTCGGAACTGTGTGATCATTTCATCTAATATTTGATCTGTTTTATTTTTGGATAATGTTGAACTGTGTGACCATTTCATTTCAATTTACTTAATTATGTATGTGGAGTTGTTTTTCTTATAATGTGTGATAGTGAGTCTTGAATGCAAGCCTTGCTAGGCGTCTGCTTGTTCTAATACCATGTTGAATTGTGCGATCATTTCATCTGACTTTTTACTTAATTATATTCGTAGAAGTTTTTTTTTTTAATTTGATAATGGGTGACGGTAAGACTTGGACGCAAGACTTATGTTTGCTCTAATGCCATATTTGAGACTTGAACACTAGAAGTAAGTTTGTTTGTTCTGATACCATGTTTAATTATGTATGCGTCTCATCTAAATTGACTTTGTTATTTTCGTATAGTTTCTGTTTTATTATGGGTGACAGTGAGACTTGAAAGCAGAACTTGTGTTTTTTCTATTGTCAAGTTGAAAATTGAATGTGAAACTACGTCTTAGGCCTGACTCACACTCCAAAAAATAGCTCTAATGGAAAGGATTGTCCAAACCTTATAAGGAGTCCATCCATCTCATTAACCACCGATGTGGTCTTTTCTCCGTCTTTAACATTGAACTCTAGGCGTTTGCTTGCTCTAATACTATATTGAATTGTGCGGTCATTTCATTTGAATTTACTTAATTATGTCTGTAAAAGTGTGTTCTGGTGTTTATTGAATTGTGTTAGTGTATTATCTGAAAGATTAGAAGACGAACACACTTTTAGTTACTCAATTACACTGTGTATTCAACAGGTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCT</genome_strand>
        <mrna_strand>CCCCTTCAACTTTGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325839" ref_strand="+" ref_description="SGN-E325839 [cTOC-12-H13]">
      <seq>tgacgtctttgatacctgctagcacgaacacatcttctggattgtcttttggaaggcaaagggcaaaggatcctggaacggtgtttgttgctggtgcaactgggcaagctggtatccgcattgcacagttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatttcaagatgcagaatcgattgcaaaggcaatcggaaatgctaacaaagttgtggttactattagtaagggagaggacggtcctgcgactgaagtcaccacaacagatgctgtacaagttatagaagcagcacaattagctggcgttggacatgtggccatagtctatgatgaatcttctccagtaggctctacatacaatgtgctcgacggaattacatcattcttcaacaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45050" stop="46460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45350" g_stop="45567" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45568" i_stop="45877" i_length="310">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45878" g_stop="46160" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="501" r_length="283" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E325839" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45350" e_stop="45567"/>
          <exon e_start="45878" e_stop="46160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATC</genome_strand>
        <mrna_strand>TGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730013" ref_strand="+" ref_description="SGN-E730013 [LA22DB06]">
      <seq>agttgctgttgcgtgaaggttatagtgtcagagctggagtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatttcaagatgcagaatcgattgcaaaggcaatcggaaatgctaacaaagttgtggttactattagtaagggagaggacggtcctgcgactgaagtcaccacaacagatgctgtacaagttatagaagcagcacaattagctggcgttggacatgtggccatagtctatgatgaatcttctccagtaggctctacatacaatgtgctcgacggaattacatcattcttcaacaatctgttctcaaaatctcaaccgttgacgatagcagagtttctgcagaagatagtagagacagacctaagctatacactcataaaaaccagattaactgacgatttctcccctgagagctcatacaaaatcgtcgtttcagctgaaggaagtgctgatgctgacgcctataaagtaatgtggggaagtctcagatagctaagctcgttgtggatgttttctccaacacagcggtggcagaaaataaggttgtcgaagtctttgctgatccatcagcaccgccaaagactgtggatgaactttttagcgtcattcctgaggatggtcggagaaaggcctatgcagaagcccttgaaaaatcgaaagctgaggaagaagctcgaggagttgctgaagcatccaagaggcaggaacaagaagcaaagaagcttgaaaagaaagaagcaaaggctgctgctaccatcgcaaaggaacctgaagagaaggcgtcatcaccttccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45176" stop="47920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45476" g_stop="45567" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45568" i_stop="45877" i_length="310">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45878" g_stop="46335" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="550" r_length="458" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46336" i_stop="46499" i_length="164">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46500" g_stop="46568" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="619" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46569" i_stop="46826" i_length="258">
            <donor d_prob="0.368" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46827" g_stop="46885" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="678" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46886" i_stop="47425" i_length="540">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47426" g_stop="47620" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="873" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E730013" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45476" e_stop="45567"/>
          <exon e_start="45878" e_stop="46335"/>
          <exon e_start="46500" e_stop="46568"/>
          <exon e_start="46827" e_stop="46885"/>
          <exon e_start="47426" e_stop="47620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAAGTAATGTAATGTATGCAATTTCTTTTAATGTTGAACATGTTCATATATTCTATTGTGGATTTAGTCACATGACATACTCTTCGGTTTATTGTTTCCTTTTTCTGCTTTCTAAGCATGTTAAATAGATCGAAATAAACTAAATCATCTCTTGTTTTATGTGAATTATCAGGTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAGGTAGTGACTGCTCCCCCTTTTAAGTAAAGCAACATTACAACAACAACTACACGTTGGGGTCGGTTATATGAAGTCTCACTCTCATATTGCTCCATTTCAGCCTGTTACATTACAGTAAACGTTGATTACCGGATTTAAATTGACAAGTTTACTAAGATAAGAAAGAGTTCAAATGAAATGAATTTATGCAAATGAACCTGTACTGGTCTTCTTTGGTGTAATGTGGATGTTCAACAACTGGAATTATTTTTTGTACAGGTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAGGTAAATACCTCTTTCCTCAGTTGCTGCATTTCCAAATTTCGGTGATACTAGTGCTCGTAAGAATGATTTCTCTATGTGTTTAACTTCTATGTACTAAATCTGAAAGTAATAAACGAATCATCAGAACATCTAAAAGATAGCTACAAGTAAGCGTCCATAAAAAGTGGGATCAGTAACGGGGAAAATAAGATAAGAGTTCCGGCTATGAAACAGGTTAAACTATTTCTTTTCACTCTGTCAGCAAAACAACAACATGGTCCCAACATAGTGTCGTCTAGGGAAGGTAGAGTGTATGCAAAACTTACCCCTACCTTATAGGTAGAGAGTCCATTTCCGATAAACCATTAGCTCAAGAAAATAAAAAGTTCAAAGAAAGAAATAACGGAAGTACAAGAAGTAACAAATAATAACAAAAACAACAGATAGTAACATAACAAAAACTACAACAAAACAATATTATAATTATATACAAAGATTTATCCTCTTTCTACAAGTTCTGGATGCGATATAATCTAAATGAGTGAAACATTATATACACAGCGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGT</genome_strand>
        <mrna_strand>AGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAAGTAAT....................................................................................................................................................................GTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAG..................................................................................................................................................................................................................................................................GTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725526" ref_strand="+" ref_description="SGN-E725526 [LA03DF08]">
      <seq>ggagtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatttcaagatgcagaatcgattgcaaaggcaatcggaaatgctaacaaagttgtggatactattagtaagggagaggacggtactgcgactgaagtcaccacaacagatgctgtacaagttatagaagcagcacaattagctggcgttggacatgtggccatagtctatgatgaatcttctccagtaggctctacatacaatgtgctcgacggaattacatcattcttcaacaatgtgttctcaaaatctcaaccgttgacgatagcagagtttctgcagaagatagtagagacagacctaatctatacactcataaaaaccagattaactgacgatgtctgccctgagagctcatacaagatcgtcgtttcagctgaaggaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45211" stop="46610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45511" g_stop="45567" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45568" i_stop="45877" i_length="310">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45878" g_stop="46310" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="490" r_length="433" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E725526" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45511" e_stop="45567"/>
          <exon e_start="45878" e_stop="46310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTG</genome_strand>
        <mrna_strand>GGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGATACTATTAGTAAGGGAGAGGACGGTACTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATGTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAATCTATACACTCATAAAAACCAGATTAACTGACGATGTCTGCCCTGAGAGCTCATACAAGATCGTCGTTTCAGCTGAAGGAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202828" ref_strand="+" ref_description="SGN-E202828 [cLEB-1-E6]">
      <seq>agtttctgaccttggtgctgcacaagagctagctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtctgaatgcagttgcatcatcatttcaagatgcagaatcgattgcaaaggcaatcggaaatgctaacaaagttgtggttactattagtaagggagaggacggtcctgcgactgaagtcaccacaacagatgctgtacaagttatagaagcagcacaattagctggcgttggacatgtggccatagtctatgatgaatcttctccagtaggctctacatacaatgtgctcgacggaattacatcattcttcaacaatctgttctcaaaatctcaaccgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45213" stop="46482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45513" g_stop="45567" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45568" i_stop="45877" i_length="310">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45878" g_stop="46182" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="360" r_length="305" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E202828" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45513" e_stop="45567"/>
          <exon e_start="45878" e_stop="46182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTT</genome_strand>
        <mrna_strand>AGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281302" ref_strand="-" ref_description="SGN-E281302 [cLEL-1-D17](-)">
      <seq>agtttctgaccttggtgctgcacaagagctatctcgtctagccgttagctacaaggtaatctctaacgatgagtcaaaacgtccgaatgcagttgcatcatcatttcaagatgcagaatcgattgcaaaggcaatcggaaatgctaacaaagttgtggttactattagtaagggagaggacggtcctgcgactgaagtcaccacaacagatgctgtacaagttatagaagcagcacaattagctggcgttggacatgtggccatagtctatgatgaatcttctccagtaggctctacatacaatgtgctcgacggaattacatcattcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45213" stop="46453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45513" g_stop="45567" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45568" i_stop="45877" i_length="310">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45878" g_stop="46153" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="331" r_length="276" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E281302" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281302" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="45513" e_stop="45567"/>
          <exon e_start="45878" e_stop="46153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAGGTCAGTCTCTTTGTCCTTGCAAAATATGGAACTTGTTAGAGTATCCGACATTGGTTGTGGGAATGAACTATTGTCATATATGGTTTTGTGCAATATTAACTCTTGAGCCAACGTTTTGGTTGAATTAGGTTCAAGGTCCATTTTTTTCTATCAGAGCCATCTTTTCTTTGTTGTGTTTCACAATATTAAGCCTGGATGTTATATCGTCCACGATCTAGATGTCCAACTTCATGAGGGAGTGTTAGAGCGTCTCACATTGGTTGAGGGAATGGGTTGTTGTTTTCTGATTATAAATGTTAAATTATTGCAGGTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTC</genome_strand>
        <mrna_strand>AGTTTCTGACCTTGGTGCTGCACAAGAGCTATCTCGTCTAGCCGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................GTAATCTCTAACGATGAGTCAAAACGTCCGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726228" ref_strand="+" ref_description="SGN-E726228 [LA11AH01]">
      <seq>aacgcctgaatgcagttgcatcatcatttcaagatgcagaatcgatcgcaaaggcaatcggaaatgctagcaaagttgtggttactattagtaagggagaggacggtcctacgactgaagtcaccacaacagatgctgtacaagttatagaagcagcacaattagctggcgttggacatgtggccatagtctatgatgaatcttctccagtaggctcaacatacaatgtgctcgacggaattacgtcattcttcaacaatctgttctcaaaatctcaaccgttgacgatagcagagtttctgcagaagatagtagagacagacctaagctatacactcataaaaaccagattaactgacgatttctcccctgagagctcatacaaaatcgtcgtttcagctgaaggaagtgctggtgctgacgcctataaagtggggaagtctcagatagctaagctcgttgtggatgttttctccaacacagcggtggcagaaaataaggttgtcgaagtctttgctgatccatcagcaccgccaaagactgtggatgaactttttagcgtcattcctgaggatggtcggagaaaggcctatgcagaagcccttgaaaaatcgaaagctgaggaagaagctcgaggagttgctgaagcatccaagaggcaggaacaagaagcaaagaagcttgaaaagaaagaagcaaaggctgctgctaccatcgcaaaggaacctgaagagaaggcgtcatcaccttccgttccttctgttgaaagtctactagacaaagcaaaagactttagtacaggattttcatttgaaaaactcagctcacagctcaaatcagctgttgaaaaggctaacgaggaatcagacgctcaagttgctaccgttagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45600" stop="48058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45900" g_stop="46330" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46331" i_stop="46499" i_length="169">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46500" g_stop="46568" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="500" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46569" i_stop="46826" i_length="258">
            <donor d_prob="0.368" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46827" g_stop="46885" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="559" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46886" i_stop="47425" i_length="540">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47426" g_stop="47758" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="892" r_length="333" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E726228" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>892</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45900" e_stop="46330"/>
          <exon e_start="46500" e_stop="46568"/>
          <exon e_start="46827" e_stop="46885"/>
          <exon e_start="47426" e_stop="47758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAAGTAATGTAATGTATGCAATTTCTTTTAATGTTGAACATGTTCATATATTCTATTGTGGATTTAGTCACATGACATACTCTTCGGTTTATTGTTTCCTTTTTCTGCTTTCTAAGCATGTTAAATAGATCGAAATAAACTAAATCATCTCTTGTTTTATGTGAATTATCAGGTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAGGTAGTGACTGCTCCCCCTTTTAAGTAAAGCAACATTACAACAACAACTACACGTTGGGGTCGGTTATATGAAGTCTCACTCTCATATTGCTCCATTTCAGCCTGTTACATTACAGTAAACGTTGATTACCGGATTTAAATTGACAAGTTTACTAAGATAAGAAAGAGTTCAAATGAAATGAATTTATGCAAATGAACCTGTACTGGTCTTCTTTGGTGTAATGTGGATGTTCAACAACTGGAATTATTTTTTGTACAGGTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAGGTAAATACCTCTTTCCTCAGTTGCTGCATTTCCAAATTTCGGTGATACTAGTGCTCGTAAGAATGATTTCTCTATGTGTTTAACTTCTATGTACTAAATCTGAAAGTAATAAACGAATCATCAGAACATCTAAAAGATAGCTACAAGTAAGCGTCCATAAAAAGTGGGATCAGTAACGGGGAAAATAAGATAAGAGTTCCGGCTATGAAACAGGTTAAACTATTTCTTTTCACTCTGTCAGCAAAACAACAACATGGTCCCAACATAGTGTCGTCTAGGGAAGGTAGAGTGTATGCAAAACTTACCCCTACCTTATAGGTAGAGAGTCCATTTCCGATAAACCATTAGCTCAAGAAAATAAAAAGTTCAAAGAAAGAAATAACGGAAGTACAAGAAGTAACAAATAATAACAAAAACAACAGATAGTAACATAACAAAAACTACAACAAAACAATATTATAATTATATACAAAGATTTATCCTCTTTCTACAAGTTCTGGATGCGATATAATCTAAATGAGTGAAACATTATATACACAGCGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCTACTAGACAAAGCAAAAGACTTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGG</genome_strand>
        <mrna_strand>AACGCCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATCGCAAAGGCAATCGGAAATGCTAGCAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTACGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCAACATACAATGTGCTCGACGGAATTACGTCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGGTGCTGACGCCTATAAA.........................................................................................................................................................................GTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAG..................................................................................................................................................................................................................................................................GTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCTACTAGACAAAGCAAAAGACTTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475926" ref_strand="+" ref_description="SGN-E475926 [cSTB-42-D4]">
      <seq>aaaacggtcctgcgactgaagtcaccacaacagatgctgtacaagttatacaagctgcacaattagctggtgttgggcatgtggccatagtctatgatgaatcttcttcaggaggttctacatacaatgtgctcgacggaattacatctttcttcaacaatctgttctcaaaatctcaaccgttgacgatagcagagtttctgcagaagatagtggagacagatctaagctatacactcataaaaaccaaattaacagaggatttctcccctgagagctcatacaaaattgttgtttcagctgaaggaagtgctggtgctgacgcctataaagtggggaagtctcagatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45702" stop="46819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45999" g_stop="46330" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46331" i_stop="46499" i_length="169">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46500" g_stop="46519" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="352" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E475926" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45999" e_stop="46330"/>
          <exon e_start="46500" e_stop="46519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAAGTAATGTAATGTATGCAATTTCTTTTAATGTTGAACATGTTCATATATTCTATTGTGGATTTAGTCACATGACATACTCTTCGGTTTATTGTTTCCTTTTTCTGCTTTCTAAGCATGTTAAATAGATCGAAATAAACTAAATCATCTCTTGTTTTATGTGAATTATCAGGTGGGGAAGTCTCAGATAGC</genome_strand>
        <mrna_strand>AAAACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATACAAGCTGCACAATTAGCTGGTGTTGGGCATGTGGCCATAGTCTATGATGAATCTTCTTCAGGAGGTTCTACATACAATGTGCTCGACGGAATTACATCTTTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTGGAGACAGATCTAAGCTATACACTCATAAAAACCAAATTAACAGAGGATTTCTCCCCTGAGAGCTCATACAAAATTGTTGTTTCAGCTGAAGGAAGTGCTGGTGCTGACGCCTATAAA.........................................................................................................................................................................GTGGGGAAGTCTCAGATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727791" ref_strand="+" ref_description="SGN-E727791 [LA15DA04]">
      <seq>caccacaacagatgctgtacaagttatccaagcagcacaattagctggcgattggacatgtggccatagtctatgatgaatcttctccagtaggctctacatacaatgtgctcgacggaattacatcattcttcaacaatctgttctcaaaatctcaaccgttgacgatatcatagtttctgcagaagatagtatagacagacctaagctatacactcataaaaaccagattaactgacgatttctcccctgagagctcatacaaaatcgtcgtttcagctgaaggaagtgctgatgctgacgcctataaagtggggaagtctcagatagctaagctcgttgtggatgttttctccaacacagcggtggcacaaaataaggttgtcgaagtctttgctgatccatcaacaccgccaaagactgtggatgaactttttagcgtcattcctgaggatggtcggagaaaggcctatgcacaagcccttgaaaaatcgaaagctgaggaagaagctcgaggagttgctgaagcatccaagaggcaggaacaagaagcaaagaatcttgaaaagaaagaaacaaaggctgctgctaccatcgcaaaggaacctgaagagaaggcgtaatcaccttccgtctcttctgttgaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45721" stop="47936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46021" g_stop="46330" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46331" i_stop="46499" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46500" g_stop="46568" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="380" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46569" i_stop="46826" i_length="258">
            <donor d_prob="0.368" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46827" g_stop="46885" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="439" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46886" i_stop="47425" i_length="540">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.913" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47426" g_stop="47636" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="650" r_length="211" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E727791" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46021" e_stop="46330"/>
          <exon e_start="46500" e_stop="46568"/>
          <exon e_start="46827" e_stop="46885"/>
          <exon e_start="47426" e_stop="47636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCG-TTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAAGTAATGTAATGTATGCAATTTCTTTTAATGTTGAACATGTTCATATATTCTATTGTGGATTTAGTCACATGACATACTCTTCGGTTTATTGTTTCCTTTTTCTGCTTTCTAAGCATGTTAAATAGATCGAAATAAACTAAATCATCTCTTGTTTTATGTGAATTATCAGGTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAGGTAGTGACTGCTCCCCCTTTTAAGTAAAGCAACATTACAACAACAACTACACGTTGGGGTCGGTTATATGAAGTCTCACTCTCATATTGCTCCATTTCAGCCTGTTACATTACAGTAAACGTTGATTACCGGATTTAAATTGACAAGTTTACTAAGATAAGAAAGAGTTCAAATGAAATGAATTTATGCAAATGAACCTGTACTGGTCTTCTTTGGTGTAATGTGGATGTTCAACAACTGGAATTATTTTTTGTACAGGTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAGGTAAATACCTCTTTCCTCAGTTGCTGCATTTCCAAATTTCGGTGATACTAGTGCTCGTAAGAATGATTTCTCTATGTGTTTAACTTCTATGTACTAAATCTGAAAGTAATAAACGAATCATCAGAACATCTAAAAGATAGCTACAAGTAAGCGTCCATAAAAAGTGGGATCAGTAACGGGGAAAATAAGATAAGAGTTCCGGCTATGAAACAGGTTAAACTATTTCTTTTCACTCTGTCAGCAAAACAACAACATGGTCCCAACATAGTGTCGTCTAGGGAAGGTAGAGTGTATGCAAAACTTACCCCTACCTTATAGGTAGAGAGTCCATTTCCGATAAACCATTAGCTCAAGAAAATAAAAAGTTCAAAGAAAGAAATAACGGAAGTACAAGAAGTAACAAATAATAACAAAAACAACAGATAGTAACATAACAAAAACTACAACAAAACAATATTATAATTATATACAAAGATTTATCCTCTTTCTACAAGTTCTGGATGCGATATAATCTAAATGAGTGAAACATTATATACACAGCGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGT</genome_strand>
        <mrna_strand>CACCACAACAGATGCTGTACAAGTTATCCAAGCAGCACAATTAGCTGGCGATTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATATCATAGTTTCTGCAGAAGATAGTATAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAA.........................................................................................................................................................................GTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCACAAAATAAG..................................................................................................................................................................................................................................................................GTTGTCGAAGTCTTTGCTGATCCATCAACACCGCCAAAGACTGTGGATGAACTTTTTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCACAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAATCTTGAAAAGAAAGAAACAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTAATCACCTTCCGTCTCTTCTGTTGAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730986" ref_strand="+" ref_description="SGN-E730986 [LA25DC05]">
      <seq>cgcttcagtaggctctacatacaatgtgctcgacggaattacatcattcttcaacaatctgttctcaaaatctcaaccgttgacgatagcagagtttctgcagaagatagtagagacagacctaagctatacactcataaaaaccagattaactgacgatttctcccctgagagctcatacaaaatcgtcgtttcagctgaaggaagtgctgatgctgacgcctataaagtggggaagtctcagatagctaagctcgttgtggatgttttctccaacacagcggtggcagaaaataaggttgtcgaagtctttgctgatccatcagcaccgccaaagactgtggatgaactttttagcgtcattcctgaggatggtcggagaaaggcctatgcagaagcccttgaaaaatcgaaagctgaggaagaagctcgaggagttgctgaagcatccaagaggcaggaacaagaagcaaagaagcttgaaaagaaagaagcaaaggctgctgctaccatcgcaaaggaacctgaagagaaggcgtcatcaccttccgttccttctgttgaaagtctactagacaaagcaaaagactttagtacaggattttcatttgaaaaactcagctcacagctcaaatcagctgttgaaaaggctaacgaggaatcagacgctcaagttgctaccgttaggggacaggccaaggctaaaaatttgcctgctcagaaagcagtggtgaaaactcctccaaggaaaccatttgcttcgaaaacgaagaaggaggctccgaaaccagctaaacaaacagaggttgcttcaacagagaagaggaagatttttggtggactgtttcaacagaaaccatctatgttgatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45804" stop="48243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46102" g_stop="46330" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46331" i_stop="46499" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46500" g_stop="46568" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="298" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46569" i_stop="46826" i_length="258">
            <donor d_prob="0.368" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46827" g_stop="46885" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="357" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46886" i_stop="47425" i_length="540">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47426" g_stop="47943" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="874" r_length="517" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E730986" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46102" e_stop="46330"/>
          <exon e_start="46500" e_stop="46568"/>
          <exon e_start="46827" e_stop="46885"/>
          <exon e_start="47426" e_stop="47943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAAGTAATGTAATGTATGCAATTTCTTTTAATGTTGAACATGTTCATATATTCTATTGTGGATTTAGTCACATGACATACTCTTCGGTTTATTGTTTCCTTTTTCTGCTTTCTAAGCATGTTAAATAGATCGAAATAAACTAAATCATCTCTTGTTTTATGTGAATTATCAGGTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAGGTAGTGACTGCTCCCCCTTTTAAGTAAAGCAACATTACAACAACAACTACACGTTGGGGTCGGTTATATGAAGTCTCACTCTCATATTGCTCCATTTCAGCCTGTTACATTACAGTAAACGTTGATTACCGGATTTAAATTGACAAGTTTACTAAGATAAGAAAGAGTTCAAATGAAATGAATTTATGCAAATGAACCTGTACTGGTCTTCTTTGGTGTAATGTGGATGTTCAACAACTGGAATTATTTTTTGTACAGGTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAGGTAAATACCTCTTTCCTCAGTTGCTGCATTTCCAAATTTCGGTGATACTAGTGCTCGTAAGAATGATTTCTCTATGTGTTTAACTTCTATGTACTAAATCTGAAAGTAATAAACGAATCATCAGAACATCTAAAAGATAGCTACAAGTAAGCGTCCATAAAAAGTGGGATCAGTAACGGGGAAAATAAGATAAGAGTTCCGGCTATGAAACAGGTTAAACTATTTCTTTTCACTCTGTCAGCAAAACAACAACATGGTCCCAACATAGTGTCGTCTAGGGAAGGTAGAGTGTATGCAAAACTTACCCCTACCTTATAGGTAGAGAGTCCATTTCCGATAAACCATTAGCTCAAGAAAATAAAAAGTTCAAAGAAAGAAATAACGGAAGTACAAGAAGTAACAAATAATAACAAAAACAACAGATAGTAACATAACAAAAACTACAACAAAACAATATTATAATTATATACAAAGATTTATCCTCTTTCTACAAGTTCTGGATGCGATATAATCTAAATGAGTGAAACATTATATACACAGCGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCTACTAGACAAAGCAAAAGACTTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACT</genome_strand>
        <mrna_strand>CGCTTCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAA.........................................................................................................................................................................GTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAG..................................................................................................................................................................................................................................................................GTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCTACTAGACAAAGCAAAAGACTTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAAC-AGAAACCATCTATGTTGATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367077" ref_strand="+" ref_description="SGN-E367077 [cLPT-5-C6]">
      <seq>tcgacggaattaccttattcttcaacaatctgttctcaaaatctcaaccgttgacgatagcagagtttctgcagaagatagtagagacagacctaagctatacactcataaaaaccagattaactgacgatttctcccctgagagctcatacaaaatcgtcgtttcagctgaaggaagtgctgatgctgacgcctataaagtggggaagtctcagatagctaagctcgttgtagatgttttctccaacacagcggtggcagaaaataaggttgtcgaagtctttgctgatccatcagcaccgccaaagactgtggatgaactttttagcgtcattcctgaggatggtcggagaaaggcctatgcagaagcccttgaaaaatcgaaagctgaggaagaagctcgaggagttgctgaagcatccaagaggcaggaacaagaagcaaagaagcttgaaaagaaagaagcaaaggctgctgctaccatcgcaaaggaacctgaagagaaggcgtcatcactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45831" stop="47916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46131" g_stop="46330" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46331" i_stop="46499" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46500" g_stop="46568" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="269" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46569" i_stop="46826" i_length="258">
            <donor d_prob="0.368" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46827" g_stop="46885" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="328" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46886" i_stop="47425" i_length="540">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47426" g_stop="47615" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="518" r_length="190" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E367077" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46131" e_stop="46330"/>
          <exon e_start="46500" e_stop="46568"/>
          <exon e_start="46827" e_stop="46885"/>
          <exon e_start="47426" e_stop="47615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAAGTAATGTAATGTATGCAATTTCTTTTAATGTTGAACATGTTCATATATTCTATTGTGGATTTAGTCACATGACATACTCTTCGGTTTATTGTTTCCTTTTTCTGCTTTCTAAGCATGTTAAATAGATCGAAATAAACTAAATCATCTCTTGTTTTATGTGAATTATCAGGTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAGGTAGTGACTGCTCCCCCTTTTAAGTAAAGCAACATTACAACAACAACTACACGTTGGGGTCGGTTATATGAAGTCTCACTCTCATATTGCTCCATTTCAGCCTGTTACATTACAGTAAACGTTGATTACCGGATTTAAATTGACAAGTTTACTAAGATAAGAAAGAGTTCAAATGAAATGAATTTATGCAAATGAACCTGTACTGGTCTTCTTTGGTGTAATGTGGATGTTCAACAACTGGAATTATTTTTTGTACAGGTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAGGTAAATACCTCTTTCCTCAGTTGCTGCATTTCCAAATTTCGGTGATACTAGTGCTCGTAAGAATGATTTCTCTATGTGTTTAACTTCTATGTACTAAATCTGAAAGTAATAAACGAATCATCAGAACATCTAAAAGATAGCTACAAGTAAGCGTCCATAAAAAGTGGGATCAGTAACGGGGAAAATAAGATAAGAGTTCCGGCTATGAAACAGGTTAAACTATTTCTTTTCACTCTGTCAGCAAAACAACAACATGGTCCCAACATAGTGTCGTCTAGGGAAGGTAGAGTGTATGCAAAACTTACCCCTACCTTATAGGTAGAGAGTCCATTTCCGATAAACCATTAGCTCAAGAAAATAAAAAGTTCAAAGAAAGAAATAACGGAAGTACAAGAAGTAACAAATAATAACAAAAACAACAGATAGTAACATAACAAAAACTACAACAAAACAATATTATAATTATATACAAAGATTTATCCTCTTTCTACAAGTTCTGGATGCGATATAATCTAAATGAGTGAAACATTATATACACAGCGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCT</genome_strand>
        <mrna_strand>TCGACGGAATTACCTTATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAA.........................................................................................................................................................................GTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTAGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAG..................................................................................................................................................................................................................................................................GTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727216" ref_strand="+" ref_description="SGN-E727216 [LA14AC08]">
      <seq>ccgttgacgatagcagagtttctgcagaagatagtagagacagacctaagctatacactcataaaaaccagattaactgacgatttctcccctgagagctcatacaaaatcgtcgtttcagctgaaggaagtgctgatgctgacgcctataaagtggggaagtctcagatagctaagctcgttgtggatgttttctccaacacagcggtggcagaaaataaggttgtcgaagtctttgctgatccatcagcaccgccaaagactgtggatgaactttttagcgtcattcctgaggatggtcggagaaaggcctatgcagaagcccttgaaaaatcgaaagctgaggaagaagctcgaggagttgctgaagcatccaagaggcaggaacaagaagcaaagaagcttgaaaagaaagaagcaaaggctgctgctaccatcgcaaaggaacctgaagagaaggcgtcatcaccttccgttccttctgttgaaagtctactagacaaagcaaaagactttagtacaggattttcatttgaaaaactcagctcacagctcaaatcagctgttgaaaaggctaacgaggaatcagacgctcaagttgctaccgttaggggacaggccaaggctaaaaatttgcctgctcagaaagcagtggtgaaaactcctccaaggaaaaccatttgcttcgaaaacgaagaaggaggctccgaaaccagctaaacaaacagaggttgcttcaacagagaagaggaagatttttggtggactgtttcaacaagaaaccatctatgttgatgactaagatgaatgaataagagaaagccaaaatattaattttctatatatcattttagccctattatgaggttacaaacaatgggttaactgaagctgagtgagaaaacatgtaaatccctgcacattttctgtggaatcttagtgtatatttgcctccaatggcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45878" stop="48406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46178" g_stop="46330" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46331" i_stop="46499" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46500" g_stop="46568" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="222" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46569" i_stop="46826" i_length="258">
            <donor d_prob="0.368" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46827" g_stop="46885" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="281" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46886" i_stop="47425" i_length="540">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47426" g_stop="48100" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="958" r_length="677" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="962" polyA_stop="972"/>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E727216" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>956</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46178" e_stop="46330"/>
          <exon e_start="46500" e_stop="46568"/>
          <exon e_start="46827" e_stop="46885"/>
          <exon e_start="47426" e_stop="48100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAAGTAATGTAATGTATGCAATTTCTTTTAATGTTGAACATGTTCATATATTCTATTGTGGATTTAGTCACATGACATACTCTTCGGTTTATTGTTTCCTTTTTCTGCTTTCTAAGCATGTTAAATAGATCGAAATAAACTAAATCATCTCTTGTTTTATGTGAATTATCAGGTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAGGTAGTGACTGCTCCCCCTTTTAAGTAAAGCAACATTACAACAACAACTACACGTTGGGGTCGGTTATATGAAGTCTCACTCTCATATTGCTCCATTTCAGCCTGTTACATTACAGTAAACGTTGATTACCGGATTTAAATTGACAAGTTTACTAAGATAAGAAAGAGTTCAAATGAAATGAATTTATGCAAATGAACCTGTACTGGTCTTCTTTGGTGTAATGTGGATGTTCAACAACTGGAATTATTTTTTGTACAGGTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAGGTAAATACCTCTTTCCTCAGTTGCTGCATTTCCAAATTTCGGTGATACTAGTGCTCGTAAGAATGATTTCTCTATGTGTTTAACTTCTATGTACTAAATCTGAAAGTAATAAACGAATCATCAGAACATCTAAAAGATAGCTACAAGTAAGCGTCCATAAAAAGTGGGATCAGTAACGGGGAAAATAAGATAAGAGTTCCGGCTATGAAACAGGTTAAACTATTTCTTTTCACTCTGTCAGCAAAACAACAACATGGTCCCAACATAGTGTCGTCTAGGGAAGGTAGAGTGTATGCAAAACTTACCCCTACCTTATAGGTAGAGAGTCCATTTCCGATAAACCATTAGCTCAAGAAAATAAAAAGTTCAAAGAAAGAAATAACGGAAGTACAAGAAGTAACAAATAATAACAAAAACAACAGATAGTAACATAACAAAAACTACAACAAAACAATATTATAATTATATACAAAGATTTATCCTCTTTCTACAAGTTCTGGATGCGATATAATCTAAATGAGTGAAACATTATATACACAGCGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCTACTAGACAAAGCAAAAGACTTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGG-AAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACTAAGATGAATGAATAAGAGAAAGCCAAAATATTAATTTTCTATATATCATTTTAGCCTAATTATGAGGTTACAAACAATGGTTTAACTGAGGCTGAGTGAGAAAGCATGTAAATCCCTGCACATTTTCTGTGG-ATCTTAGTGTATATTTGCCTCAAAT</genome_strand>
        <mrna_strand>CCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAA.........................................................................................................................................................................GTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAG..................................................................................................................................................................................................................................................................GTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCTACTAGACAAAGCAAAAGACTTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACTAAGATGAATGAATAAGAGAAAGCCAAAATATTAATTTTCTATATATCATTTTAGCCCTATTATGAGGTTACAAACAATGGGTTAACTGAAGCTGAGTGAGAAAACATGTAAATCCCTGCACATTTTCTGTGGAATCTTAGTGTATATTTGCCTCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725786" ref_strand="+" ref_description="SGN-E725786 [LA05CG03]">
      <seq>ataaaaaccagataactgacgatttgtggggtgggagccatacaatatcgtcgtttcagggtgaaggaagtgctggtgctgacgcctataaagtggggaagtctcagatagctaagctcgttgtggatgttttctccaacacagcggtggcagaaaataaggttgtcgaagtctttgctgatccatcagcaccgccaaagactgtggatgaactttttagcgtcattcctgaggatggtcggagaaaggcctatgcagaagcccttgaaaaatcgaaagctgaggaagaagctcgaggagttgctgaagcatccaagaggcaggaacaagaagcaaagaagcttgaaaagaaagaagcaaaggctgctgctaccatcgcaaaggaacctgaagagaaggcgtcatcaccttccgttccttctgttgaaagtctnactagacaagcaaaagactntagtacaggattttcatttgaaaaactcagctcacagctcatatcagctgttgaaaaggctaacgaggaatcagacgctcaagttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45970" stop="48048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46238" g_stop="46330" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.860"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46331" i_stop="46499" i_length="169">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46500" g_stop="46568" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="161" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46569" i_stop="46826" i_length="258">
            <donor d_prob="0.368" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46827" g_stop="46885" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="220" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46886" i_stop="47425" i_length="540">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47426" g_stop="47748" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="543" r_length="323" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E725786" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46238" e_stop="46330"/>
          <exon e_start="46500" e_stop="46568"/>
          <exon e_start="46827" e_stop="46885"/>
          <exon e_start="47426" e_stop="47748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCA-GCTGAAGGAAGTGCTGATGCTGACGCCTATAAAGTAATGTAATGTATGCAATTTCTTTTAATGTTGAACATGTTCATATATTCTATTGTGGATTTAGTCACATGACATACTCTTCGGTTTATTGTTTCCTTTTTCTGCTTTCTAAGCATGTTAAATAGATCGAAATAAACTAAATCATCTCTTGTTTTATGTGAATTATCAGGTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAGGTAGTGACTGCTCCCCCTTTTAAGTAAAGCAACATTACAACAACAACTACACGTTGGGGTCGGTTATATGAAGTCTCACTCTCATATTGCTCCATTTCAGCCTGTTACATTACAGTAAACGTTGATTACCGGATTTAAATTGACAAGTTTACTAAGATAAGAAAGAGTTCAAATGAAATGAATTTATGCAAATGAACCTGTACTGGTCTTCTTTGGTGTAATGTGGATGTTCAACAACTGGAATTATTTTTTGTACAGGTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAGGTAAATACCTCTTTCCTCAGTTGCTGCATTTCCAAATTTCGGTGATACTAGTGCTCGTAAGAATGATTTCTCTATGTGTTTAACTTCTATGTACTAAATCTGAAAGTAATAAACGAATCATCAGAACATCTAAAAGATAGCTACAAGTAAGCGTCCATAAAAAGTGGGATCAGTAACGGGGAAAATAAGATAAGAGTTCCGGCTATGAAACAGGTTAAACTATTTCTTTTCACTCTGTCAGCAAAACAACAACATGGTCCCAACATAGTGTCGTCTAGGGAAGGTAGAGTGTATGCAAAACTTACCCCTACCTTATAGGTAGAGAGTCCATTTCCGATAAACCATTAGCTCAAGAAAATAAAAAGTTCAAAGAAAGAAATAACGGAAGTACAAGAAGTAACAAATAATAACAAAAACAACAGATAGTAACATAACAAAAACTACAACAAAACAATATTATAATTATATACAAAGATTTATCCTCTTTCTACAAGTTCTGGATGCGATATAATCTAAATGAGTGAAACATTATATACACAGCGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCT-ACTAGACAAAGCAAAAGACTTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTA</genome_strand>
        <mrna_strand>ATAAAAACCAGA-TAACTGACGATTTGTGGGGTGGGAGC-CATACAATATCGTCGTTTCAGGGTGAAGGAAGTGCTGGTGCTGACGCCTATAAA.........................................................................................................................................................................GTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAG..................................................................................................................................................................................................................................................................GTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCTNACTAGAC-AAGCAAAAGACTNTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCATATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615186" ref_strand="+" ref_description="SGN-E615186 [64982]">
      <seq>gaaagaagcaaaggctgctgctagcattgcaaaggaacctgaagagaaggcgtcatcaccttctattccttctgttgaaagtctactagacaaagcaaaaggcttaagtacaggattttcatttgaaaaattcagctcacaactcaaatcagctgttgaaaaggccaacgaggaatcagacgctcaagttgctaccgttaggggacgtgccaaggccaagaatttgcctgctcagaaagcagtggtgaaaactcctccaaggaatccatttgcttcgaaaacgaaggaggctccgaaaccagctaaacaaacagaggttgctgcaacagagaagaggaagattttttggtggactgtttcaacaagaaaccatctatgttgatgattaagatgaatggataagagaaggccaaaatattaattttctatatatcattttagcctaattatgaggttaaaacaatggcttaactgaggctgagtgaggaaagcatgtaaatccctgcacattttctgtggatcttagtgtatatttgcctcaaatgcaacatttaaggcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47255" stop="48415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47555" g_stop="48115" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E615186" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E615186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47555" e_stop="48115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCTACTAGACAAAGCAAAAGACTTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGA-TTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACTAAGATGAATGAATAAGAGAAAGCCAAAATATTAATTTTCTATATATCATTTTAGCCTAATTATGAGGTTACAAACAATGGTTTAACTGAGGCTGAGTGA-GAAAGCATGTAAATCCCTGCACATTTTCTGTGGATCTTAGTGTATATTTGCCTCAAATGCAACA-TTCAGGCAC</genome_strand>
        <mrna_strand>GAAAGAAGCAAAGGCTGCTGCTAGCATTGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCTATTCCTTCTGTTGAAAGTCTACTAGACAAAGCAAAAGGCTTAAGTACAGGATTTTCATTTGAAAAATTCAGCTCACAACTCAAATCAGCTGTTGAAAAGGCCAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACGTGCCAAGGCCAAGAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAATCCATTTGCTTCGAAAAC---GAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTGCAACAGAGAAGAGGAAGATTTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGATTAAGATGAATGGATAAGAGAAGGCCAAAATATTAATTTTCTATATATCATTTTAGCCTAATTATGAGGTTA-AAACAATGGCTTAACTGAGGCTGAGTGAGGAAAGCATGTAAATCCCTGCACATTTTCTGTGGATCTTAGTGTATATTTGCCTCAAATGCAACATTTAAGGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290882" ref_strand="+" ref_description="SGN-E290882 [cLET-10-J7]">
      <seq>gcaaaggaacctgaagagaaggcgtcatcaccttccgttccttctgttgaaagtctactagacaaagcaaaagactttagtacaggattttcatttgaaaaactcagctcacagctcaaatcagctgttgaaaaggctaacgaggaatcagacgctcaagttgctaccgttaggggacaggccaaggctaaaaatttgcctgctcagaaagcagtggtgaaaactcctccaaggaaaccatttgcttcgaaaacgaagaaggaggctccgaaaccagctaaacaaacagaggttgcttcaacagagaagaggaagatttttggtggactgtttcaacaagaaaccatctatgttgatgactaagatgaatgaataagagaaagccaaaatattaattttctatatatcattttagcctaattatgaggttacaaacaatggtttaactgaggctgagtgagaaagcatgtaaatccctgcacattttctgtggatcttagtgtatatttgcctcaaatgcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47283" stop="48406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47583" g_stop="48111" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E290882" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47583" e_stop="48111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCTACTAGACAAAGCAAAAGACTTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACTAAGATGAATGAATAAGAGAAAGCCAAAATATTAATTTTCTATATATCATTTTAGCCTAATTATGAGGTTACAAACAATGGTTTAACTGAGGCTGAGTGAGAAAGCATGTAAATCCCTGCACATTTTCTGTGGATCTTAGTGTATATTTGCCTCAAATGCAACATTCAG</genome_strand>
        <mrna_strand>GCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCTACTAGACAAAGCAAAAGACTTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACTAAGATGAATGAATAAGAGAAAGCCAAAATATTAATTTTCTATATATCATTTTAGCCTAATTATGAGGTTACAAACAATGGTTTAACTGAGGCTGAGTGAGAAAGCATGTAAATCCCTGCACATTTTCTGTGGATCTTAGTGTATATTTGCCTCAAATGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E616121" ref_strand="+" ref_description="SGN-E616121 [65927]">
      <seq>ctgaagagaaggcgtcatcaccttctattccttctgttgaaagtctactagacaaagcaaaaggcttaagtacaggattttcatttgaaaaattcagctcacaactcaaatcagctgttgaaaaggccaacgaggaatcagacgctcaagttgctaccgttaggggacgtgccaaggccaagaatttgcctgctcagaaagcagtggtgaaaactcctccaaggaatccatttgcttcgaaaacgaaggaggctccgaaaccagctaaacaaacagaggttgctgcaacagagaagaggaagatttttggtggactgtttcaacaagaaaccatctatgttgatgattaagatgaatggataagagaaggccaaaatattaattttctatatatcattttagcctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47293" stop="48302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47593" g_stop="48003" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E616121" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E616121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47593" e_stop="48003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCTACTAGACAAAGCAAAAGACTTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACTAAGATGAATGAATAAGAGAAAGCCAAAATATTAATTTTCTATATATCATTTTAGCCTAAT</genome_strand>
        <mrna_strand>CTGAAGAGAAGGCGTCATCACCTTCTATTCCTTCTGTTGAAAGTCTACTAGACAAAGCAAAAGGCTTAAGTACAGGATTTTCATTTGAAAAATTCAGCTCACAACTCAAATCAGCTGTTGAAAAGGCCAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACGTGCCAAGGCCAAGAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAATCCATTTGCTTCGAAAAC---GAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTGCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGATTAAGATGAATGGATAAGAGAAGGCCAAAATATTAATTTTCTATATATCATTTTAGCCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296399" ref_strand="+" ref_description="SGN-E296399 [cLET-19-B4]">
      <seq>tttagtacaggattttcatttgaaaaactcatctctcagctcaaatcagctgttgaaaaggctaacgaggaatcagacgctcaagttgctaccgttaggggacaggccaaggctaaaaatttgcctgctcagaaagcagtggtgaaaactcctccaaggaaaccatttgcttcgaaaacgaagaaggaggctccgaaaccagctaaacaaacagaggttgcttcaacagagaagaggaagatttttggtggactgtttcaacaagaaaccatctatgttgatgactaagatgaatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47358" stop="48256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47658" g_stop="47956" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E296399" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47658" e_stop="47956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACTAAGATGAATGAAT</genome_strand>
        <mrna_strand>TTTAGTACAGGATTTTCATTTGAAAAACTCATCTCTCAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACTAAGATGAATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203097" ref_strand="+" ref_description="SGN-E203097 [cLEB-3-J11](-)">
      <seq>tttcatttgaaaaactcagctcacagctcaaatcggctgttgaaaaggctaacgaggaatcagacgctcaagttgctaccgttaggggacaggccaaggctaaaaatttgcctgctcagaaagcagtggtgaaaactcctccaaggaaaccatttgcttcgaaaacgaagaaggaggctccgaaaccagctaaacaaacagaggttgcttcaacagagaagaggaagatttttggtggactgtttcaacaagaaaccatctatgttgatgactaagatgaatgaataagagaaagccaaaatattaattttctatatatcattttagcctaattatgaggttacaaacaatggtttaactgaggctgagtgagaaagcatgtaaatccctgcacattttctgtggatcttagtgtatatttgcctcaaatgcaacattcaggcacttgttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47371" stop="48422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47671" g_stop="48121" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="452" polyA_stop="468"/>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E203097" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47671" e_stop="48121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACTAAGATGAATGAATAAGAGAAAGCCAAAATATTAATTTTCTATATATCATTTTAGCCTAATTATGAGGTTACAAACAATGGTTTAACTGAGGCTGAGTGAGAAAGCATGTAAATCCCTGCACATTTTCTGTGGATCTTAGTGTATATTTGCCTCAAATGCAACATTCAGGCACTTGTTC</genome_strand>
        <mrna_strand>TTTCATTTGAAAAACTCAGCTCACAGCTCAAATCGGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACTAAGATGAATGAATAAGAGAAAGCCAAAATATTAATTTTCTATATATCATTTTAGCCTAATTATGAGGTTACAAACAATGGTTTAACTGAGGCTGAGTGAGAAAGCATGTAAATCCCTGCACATTTTCTGTGGATCTTAGTGTATATTTGCCTCAAATGCAACATTCAGGCACTTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E614943" ref_strand="+" ref_description="SGN-E614943 [64736]">
      <seq>ctcaaatcagctgttgaaaaggccaacgaggaatcagacgctcaagttgctaccgttaggggacgtgccaaggccaagaatttgcctgctcagaaagcagtggtgaaaactcctccaaggaatccatttgcttcgaaaacgaaggaggctccgaaaccagctaaacaaacagaggttgctgcaacagagaagaggaagatttttggtggactgtttcaacaagaaaccatctatgttgatgattaagatgaatggataagagaaggccaaaatattaattttctatatatcattttagcctaattatgaggttaaaacaatggcttaactgaggctgagtgagaaagcatgtaaatccctgcacattttctgtggatcttagtgtatatttgcctcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47397" stop="48399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47697" g_stop="48098" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="399" polyA_stop="412"/>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E614943" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E614943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47697" e_stop="48098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACTAAGATGAATGAATAAGAGAAAGCCAAAATATTAATTTTCTATATATCATTTTAGCCTAATTATGAGGTTACAAACAATGGTTTAACTGAGGCTGAGTGAGAAAGCATGTAAATCCCTGCACATTTTCTGTGGATCTTAGTGTATATTTGCCTCAA</genome_strand>
        <mrna_strand>CTCAAATCAGCTGTTGAAAAGGCCAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACGTGCCAAGGCCAAGAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAATCCATTTGCTTCGAAAAC---GAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTGCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGATTAAGATGAATGGATAAGAGAAGGCCAAAATATTAATTTTCTATATATCATTTTAGCCTAATTATGAGGTTA-AAACAATGGCTTAACTGAGGCTGAGTGAGAAAGCATGTAAATCCCTGCACATTTTCTGTGGATCTTAGTGTATATTTGCCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230327" ref_strand="+" ref_description="SGN-E230327 [cLEL-33-J3](-)">
      <seq>atatgaagggtctgattttcataattaccatcatcgactgctctacacaaagtctggaaactactcatcgactttcgtttacatggactggttatttggtactgataagggttacagaaagttgaagatgctgaaggagcaagagggcaaagcaatgtaaacaagatgggaaagtaaagggggaataaaattacatgtttgtttgagtgtataagaaatagtactgaacagattctattagtaatgatgagattaataacgtaaggattagttatgttggcattattaatgcaagaagtagttataacatgcactacataattctatctacaaaaaatatttgtttacaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50662" stop="49132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50450" g_stop="50442" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50441" i_stop="50362" i_length="80">
            <donor d_prob="0.971" d_score="0.00"/>
            <acceptor a_prob="0.724" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50361" g_stop="50281" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="90" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50280" i_stop="49695" i_length="586">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49694" g_stop="49432" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="353" r_length="263" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="354" polyA_stop="366"/>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E230327" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50450" e_stop="50442"/>
          <exon e_start="50361" e_stop="50281"/>
          <exon e_start="49694" e_stop="49432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGAGGGTCTGTACATAGCTTTACGTATTCATCTGTTTTACACGTCGTGAATGATGTTCTTATAGTTGCTAGTGTTTTGTTCCCAGGTCTGATTTTCATGATTACCATCATCGACTGCTCTACACAAAGTCTGGAAACTACTCATCGACTTTCGTTTACATGGACTGGTAAGGCTTCCATACATTGCCTTTTACACTAGTACTCTAGTAAACAGATAACTCTGTACATATTCAAAGCTACTAGGTTCGGCTGATCCTGTGACTAATACTCTAGCTCCGCCCCTAGTTCCAAAACTTATACATCTCCCTGCTTATCCTCAAGACAACTTGGTCTTTTGCAGAATTTCTCTTAGCAATTCTTGATCGTTGCTGTTGTTTTTGTTGTTGTTCTGCTTCCCAACTAATATTGACTGTGGGAGTTCAAAATTTTAGTATATATATCTCTTTCAGAAGTTTTTTTTACCTACACTACTAGAAAATATAGAATTAGTGACGGAAATTGTCGATAATCCCTAATTAATCTGTAGCTAAAAAGCTCGATAACTAATCATAGCTTAATAGGATTAGCATGCAATTTGCTGTTTAGCTATGAAATTTTGTCCATCACTAATTCCTTGTATTCTAGCAATGCTGTATACGTACTATTACTTTCTGTATACACTGTATAATTTTTTGATGAAATGTGTTCGAGTGACCGCTCTTGGATCGATATGTCGCTAGGCCGCTAAGACCTATATCTCTCTTTTTTATTTAGGTTATTTGGTACTGATAAGGGTTACAGAAAGTTGAAGATGCTGAAGGAGCAAGAGGGCAAAGCAATGTAAACAAGATGGGAAAGTAGAGGGGGAATAAAATTACATGTTTGTTTGAGTGTATAAGAAATAGTACTGAACAGATTCTATTAGTAATGATGAGATTAATAACGTAAGGATTAGTTATGTTGGCATTATTAATGCAAGAAGTAGTTATAACATGCACTACATAATTCTATCTACAAAAAATATTTGTTTACAAAAA</genome_strand>
        <mrna_strand>ATATGAAGG................................................................................GTCTGATTTTCATAATTACCATCATCGACTGCTCTACACAAAGTCTGGAAACTACTCATCGACTTTCGTTTACATGGACTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTGGTACTGATAAGGGTTACAGAAAGTTGAAGATGCTGAAGGAGCAAGAGGGCAAAGCAATGTAAACAAGATGGGAAAGTAAAGGGGGAATAAAATTACATGTTTGTTTGAGTGTATAAGAAATAGTACTGAACAGATTCTATTAGTAATGATGAGATTAATAACGTAAGGATTAGTTATGTTGGCATTATTAATGCAAGAAGTAGTTATAACATGCACTACATAATTCTATCTACAAAAAATATTTGTTTACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223713" ref_strand="+" ref_description="SGN-E223713 [cLEL-19-G15](-)">
      <seq>acattatatctatggatctctcttagaatcctcgagacagtcgaggcacattctggataccatttcccctggagcccgtcaaacttcttgccattatatggagggtctgattttcatgattaccatcatcgactgctctacacaaagtctggaaactactcatcgactttcgtttacatggactggttatttggtactgataagggttacagaaagttgaagatgctgaaggagcaagagggcaaagcaatgtaaacaagatgggaaagtagagggggaataaaattacatgtttgtttgagtgtataagaaatagtactgaacagattctattagtaatgatgagattaataacgtaaggattagttatgttggcattattaatgcaagaagtagttataacatgcactacataattctatctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50845" stop="49146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50545" g_stop="50442" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50441" i_stop="50362" i_length="80">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.724" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50361" g_stop="50281" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="185" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50280" i_stop="49695" i_length="586">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49694" g_stop="49449" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="431" r_length="246" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="432" polyA_stop="441"/>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E223713" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50545" e_stop="50442"/>
          <exon e_start="50361" e_stop="50281"/>
          <exon e_start="49694" e_stop="49449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTATATCTATGGATCTCTCTTAGAATCCTCGAGACAGTCGAGGCACATTCTGGATACCATTTCCCCTGGAGCCCGTCAAACTTCTTGCCATTATATGGAGGGTCTGTACATAGCTTTACGTATTCATCTGTTTTACACGTCGTGAATGATGTTCTTATAGTTGCTAGTGTTTTGTTCCCAGGTCTGATTTTCATGATTACCATCATCGACTGCTCTACACAAAGTCTGGAAACTACTCATCGACTTTCGTTTACATGGACTGGTAAGGCTTCCATACATTGCCTTTTACACTAGTACTCTAGTAAACAGATAACTCTGTACATATTCAAAGCTACTAGGTTCGGCTGATCCTGTGACTAATACTCTAGCTCCGCCCCTAGTTCCAAAACTTATACATCTCCCTGCTTATCCTCAAGACAACTTGGTCTTTTGCAGAATTTCTCTTAGCAATTCTTGATCGTTGCTGTTGTTTTTGTTGTTGTTCTGCTTCCCAACTAATATTGACTGTGGGAGTTCAAAATTTTAGTATATATATCTCTTTCAGAAGTTTTTTTTACCTACACTACTAGAAAATATAGAATTAGTGACGGAAATTGTCGATAATCCCTAATTAATCTGTAGCTAAAAAGCTCGATAACTAATCATAGCTTAATAGGATTAGCATGCAATTTGCTGTTTAGCTATGAAATTTTGTCCATCACTAATTCCTTGTATTCTAGCAATGCTGTATACGTACTATTACTTTCTGTATACACTGTATAATTTTTTGATGAAATGTGTTCGAGTGACCGCTCTTGGATCGATATGTCGCTAGGCCGCTAAGACCTATATCTCTCTTTTTTATTTAGGTTATTTGGTACTGATAAGGGTTACAGAAAGTTGAAGATGCTGAAGGAGCAAGAGGGCAAAGCAATGTAAACAAGATGGGAAAGTAGAGGGGGAATAAAATTACATGTTTGTTTGAGTGTATAAGAAATAGTACTGAACAGATTCTATTAGTAATGATGAGATTAATAACGTAAGGATTAGTTATGTTGGCATTATTAATGCAAGAAGTAGTTATAACATGCACTACATAATTCTATCTACAAAAA</genome_strand>
        <mrna_strand>ACATTATATCTATGGATCTCTCTTAGAATCCTCGAGACAGTCGAGGCACATTCTGGATACCATTTCCCCTGGAGCCCGTCAAACTTCTTGCCATTATATGGAGG................................................................................GTCTGATTTTCATGATTACCATCATCGACTGCTCTACACAAAGTCTGGAAACTACTCATCGACTTTCGTTTACATGGACTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTGGTACTGATAAGGGTTACAGAAAGTTGAAGATGCTGAAGGAGCAAGAGGGCAAAGCAATGTAAACAAGATGGGAAAGTAGAGGGGGAATAAAATTACATGTTTGTTTGAGTGTATAAGAAATAGTACTGAACAGATTCTATTAGTAATGATGAGATTAATAACGTAAGGATTAGTTATGTTGGCATTATTAATGCAAGAAGTAGTTATAACATGCACTACATAATTCTATCTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224081" ref_strand="+" ref_description="SGN-E224081 [cLEL-19-G15](-)">
      <seq>atggatctctcttagaatcctcgagacagtcgaggcacattctggataccatttcccctggagcccgtcaaacttcttgccattatatggagggtctgattttcatgattaccatcatcgactgctctacacaaagtctggaaactactcatcgactttcgtttacatggactggttatttggtactgataagggttacagaaagttgaagatgctgaaggagcaagagggcaaagcaatgtaaacaagatgggaaagtagagggggaataaaattacatgtttgtttgagtgtataagaaatagtactgaacagattctattagtaatgatgagattaataacgtaaggattagttatgttggcattattaatgcaagaagtagttataacatgcactacataattctatctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50834" stop="49146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50534" g_stop="50442" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50441" i_stop="50362" i_length="80">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.724" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50361" g_stop="50281" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="174" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50280" i_stop="49695" i_length="586">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49694" g_stop="49449" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="420" r_length="246" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="421" polyA_stop="430"/>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E224081" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50534" e_stop="50442"/>
          <exon e_start="50361" e_stop="50281"/>
          <exon e_start="49694" e_stop="49449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGATCTCTCTTAGAATCCTCGAGACAGTCGAGGCACATTCTGGATACCATTTCCCCTGGAGCCCGTCAAACTTCTTGCCATTATATGGAGGGTCTGTACATAGCTTTACGTATTCATCTGTTTTACACGTCGTGAATGATGTTCTTATAGTTGCTAGTGTTTTGTTCCCAGGTCTGATTTTCATGATTACCATCATCGACTGCTCTACACAAAGTCTGGAAACTACTCATCGACTTTCGTTTACATGGACTGGTAAGGCTTCCATACATTGCCTTTTACACTAGTACTCTAGTAAACAGATAACTCTGTACATATTCAAAGCTACTAGGTTCGGCTGATCCTGTGACTAATACTCTAGCTCCGCCCCTAGTTCCAAAACTTATACATCTCCCTGCTTATCCTCAAGACAACTTGGTCTTTTGCAGAATTTCTCTTAGCAATTCTTGATCGTTGCTGTTGTTTTTGTTGTTGTTCTGCTTCCCAACTAATATTGACTGTGGGAGTTCAAAATTTTAGTATATATATCTCTTTCAGAAGTTTTTTTTACCTACACTACTAGAAAATATAGAATTAGTGACGGAAATTGTCGATAATCCCTAATTAATCTGTAGCTAAAAAGCTCGATAACTAATCATAGCTTAATAGGATTAGCATGCAATTTGCTGTTTAGCTATGAAATTTTGTCCATCACTAATTCCTTGTATTCTAGCAATGCTGTATACGTACTATTACTTTCTGTATACACTGTATAATTTTTTGATGAAATGTGTTCGAGTGACCGCTCTTGGATCGATATGTCGCTAGGCCGCTAAGACCTATATCTCTCTTTTTTATTTAGGTTATTTGGTACTGATAAGGGTTACAGAAAGTTGAAGATGCTGAAGGAGCAAGAGGGCAAAGCAATGTAAACAAGATGGGAAAGTAGAGGGGGAATAAAATTACATGTTTGTTTGAGTGTATAAGAAATAGTACTGAACAGATTCTATTAGTAATGATGAGATTAATAACGTAAGGATTAGTTATGTTGGCATTATTAATGCAAGAAGTAGTTATAACATGCACTACATAATTCTATCTACAAAAA</genome_strand>
        <mrna_strand>ATGGATCTCTCTTAGAATCCTCGAGACAGTCGAGGCACATTCTGGATACCATTTCCCCTGGAGCCCGTCAAACTTCTTGCCATTATATGGAGG................................................................................GTCTGATTTTCATGATTACCATCATCGACTGCTCTACACAAAGTCTGGAAACTACTCATCGACTTTCGTTTACATGGACTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTGGTACTGATAAGGGTTACAGAAAGTTGAAGATGCTGAAGGAGCAAGAGGGCAAAGCAATGTAAACAAGATGGGAAAGTAGAGGGGGAATAAAATTACATGTTTGTTTGAGTGTATAAGAAATAGTACTGAACAGATTCTATTAGTAATGATGAGATTAATAACGTAAGGATTAGTTATGTTGGCATTATTAATGCAAGAAGTAGTTATAACATGCACTACATAATTCTATCTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707782" ref_strand="+" ref_description="SGN-E707782 [FA33DH03]">
      <seq>cggcgtttcttcttgcaaattttagtgatttccaattgacttctcttggaggtttcattgttcatgagagcgccttcttcttgtctggaatccctttcatccttttcgaaaaggcagggtggtttggcaagtacaaaattcagaaaaagaccaacaccccggaagcccagcagaaatgtattactcgtctgctgatatttcatttttgtgttaatcttccaatcctgattgttacgtatccgctctttaaattcatggggatgcgatctactcttccattgccatcctggaaagtggtttcaacccaagttttattctatttcatcttggaggatttcgtattttactggggacacagagttttacatacgaaatggctctacaagcacgtccacagtgtccatcatgagtacgcgacaccatttggtttgacatctgagtatgctcaccctgctgaaattctcttccttggatttgctacggtcattggtcctgcaatcaccgggccacatttgataacattatatctatggatctctcttagaatcctcgagacagtcgaggcacattctggataccatttcccctggagcccgtcaaacttcttgccattatatggagggtctgattttcatgattaccatcatcgactgctctacacaaagtctggaaactactcatcgactttcgtttacatggactggttatttggtactgataagggttacagaaagttgaagatgctgaaggagcaagagggcaaagcaatgtaaacaagatgggaaagtagagggggaataaaattacatgtttgtttgagtgtataagaaatagtactgaacagattctattagtaatgatgagaataataacgtaaggattagttatgttggcattattaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52262" stop="49192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51961" g_stop="51824" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="143" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51823" i_stop="51667" i_length="157">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51666" g_stop="51521" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="289" r_length="146" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51520" i_stop="50854" i_length="667">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50853" g_stop="50734" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="409" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50733" i_stop="50655" i_length="79">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50654" g_stop="50442" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="622" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50441" i_stop="50362" i_length="80">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.724" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50361" g_stop="50281" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="703" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50280" i_stop="49695" i_length="586">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49694" g_stop="49495" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="903" r_length="200" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E707782" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>898</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51961" e_stop="51824"/>
          <exon e_start="51666" e_stop="51521"/>
          <exon e_start="50853" e_stop="50734"/>
          <exon e_start="50654" e_stop="50442"/>
          <exon e_start="50361" e_stop="50281"/>
          <exon e_start="49694" e_stop="49495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTGCAAATTTTAGTGATTTCCAATTGACTTCTCTTGGAGGTTTCATTGTTCATGAGAGCGCTTTCTTCTTGTCTGGAATCCCTTTCATCCTTTTCGAAAAGGCAGGGTGGTTTGGCAAGTACAAAATTCAGGTAATGGAATGATGTTTCTTGTTCAAAATGATCCCAAACATCAACGATATTCGACTCAAGACTAGTACTAGTACTCGTGCACGAGTACGTAGTTCATTCCTATCATTATTCACATGAATTTTCATTTTGTTGCACTGTCGACCTATTTGTGTTGCAGAAAAAGACCAACACCCCGGAAGCTCAGCAGAAATGTATTACTCGTCTGCTGATATTTCATTTTTGTGTTAATCTTCCAATCCTGATAGTTACGTATCCGCTCTTTAAATTCATGGGGATGCGATCTACTCTTCCATTGCCATCCTGGTATTTTCTGCTTCTCTGTATACTAAGCTTTACTTGTGTGATTGCATACCTTTTACTGATCTTGCAATCTTCGTTTCTTTTGTTTTGCTTTCTACTTCTTTACGGTTCTCTTTTTAGAATCAATAACCATTTTGTTAGCCTGATGCATTGCATGTTTAGGCTATGGTTATCAAAATAGGCTAACTGAATGGGAGAAGTAGTACAACAAGATTATATGTACAGTTGTTAGATTGACAACGTTATGCAGAAGTGAATGTTGTGAACCTCTATGGTCCAACATATTCGATAGAAGGTGCACGTAGCCTCACATAGAGAATAAGTTTTCTCTGACTCATGTCCTACAGGGACATCGAGATCAGATCACTGGTATATAGATGGGCAAAATCATGGTGGTTGAACAGGAGAAGGTAGATCTAAAATCATACGGAATGAAGTTGTCTTGAAAGACCTATCATCCCTTTAGATTTCATGCAAACATTGAGAAACATATGAAACAAACAACGGAAAAGAACATACCTGTATTGGTGATACCAATTAATTGATAAATGAGGATTCATGCAATCGACTCCAACTAGCTTGGAATTGAGGCGTAGTAGTTGTATAATTTCGCAAGTATCTTTTCTGCTTATTGATCAGAGTAAATTGCAAATACTTCTTTTTTCTGCAGGAAAGTGGTTTCAACCCAAGTTTTATTCTATTTCATCTTGGAGGATTTCGTATTTTACTGGGGACACAGAGTTTTACATACGAAATGGCTCTACAAGCACGTCCACAGTGTCCATCATGAGTATGTGAACTACTTAAATTCTTCGAGTTTCACTTTTTCTCCCCATGAAATTCACAACTTTCTGCTTTTGTTACACTAGGTACGCGACACCATTTGGTTTGACATCTGAGTATGCTCACCCTGCTGAAATTCTCTTCCTTGGATTTGCTACGGTCATTGGTCCTGCAATCACCGGGCCACATTTGATAACATTATATCTATGGATCTCTCTTAGAATCCTCGAGACAGTCGAGGCACATTCTGGATACCATTTCCCCTGGAGCCCGTCAAACTTCTTGCCATTATATGGAGGGTCTGTACATAGCTTTACGTATTCATCTGTTTTACACGTCGTGAATGATGTTCTTATAGTTGCTAGTGTTTTGTTCCCAGGTCTGATTTTCATGATTACCATCATCGACTGCTCTACACAAAGTCTGGAAACTACTCATCGACTTTCGTTTACATGGACTGGTAAGGCTTCCATACATTGCCTTTTACACTAGTACTCTAGTAAACAGATAACTCTGTACATATTCAAAGCTACTAGGTTCGGCTGATCCTGTGACTAATACTCTAGCTCCGCCCCTAGTTCCAAAACTTATACATCTCCCTGCTTATCCTCAAGACAACTTGGTCTTTTGCAGAATTTCTCTTAGCAATTCTTGATCGTTGCTGTTGTTTTTGTTGTTGTTCTGCTTCCCAACTAATATTGACTGTGGGAGTTCAAAATTTTAGTATATATATCTCTTTCAGAAGTTTTTTTTACCTACACTACTAGAAAATATAGAATTAGTGACGGAAATTGTCGATAATCCCTAATTAATCTGTAGCTAAAAAGCTCGATAACTAATCATAGCTTAATAGGATTAGCATGCAATTTGCTGTTTAGCTATGAAATTTTGTCCATCACTAATTCCTTGTATTCTAGCAATGCTGTATACGTACTATTACTTTCTGTATACACTGTATAATTTTTTGATGAAATGTGTTCGAGTGACCGCTCTTGGATCGATATGTCGCTAGGCCGCTAAGACCTATATCTCTCTTTTTTATTTAGGTTATTTGGTACTGATAAGGGTTACAGAAAGTTGAAGATGCTGAAGGAGCAAGAGGGCAAAGCAATGTAAACAAGATGGGAAAGTAGAGGGGGAATAAAATTACATGTTTGTTTGAGTGTATAAGAAATAGTACTGAACAGATTCTATTAGTAATGATGAGATTAATAACGTAAGGATTAGTTATGTTGGCATTATTAAT</genome_strand>
        <mrna_strand>TTTCTTCTTGCAAATTTTAGTGATTTCCAATTGACTTCTCTTGGAGGTTTCATTGTTCATGAGAGCGCCTTCTTCTTGTCTGGAATCCCTTTCATCCTTTTCGAAAAGGCAGGGTGGTTTGGCAAGTACAAAATTCAG.............................................................................................................................................................AAAAAGACCAACACCCCGGAAGCCCAGCAGAAATGTATTACTCGTCTGCTGATATTTCATTTTTGTGTTAATCTTCCAATCCTGATTGTTACGTATCCGCTCTTTAAATTCATGGGGATGCGATCTACTCTTCCATTGCCATCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTGGTTTCAACCCAAGTTTTATTCTATTTCATCTTGGAGGATTTCGTATTTTACTGGGGACACAGAGTTTTACATACGAAATGGCTCTACAAGCACGTCCACAGTGTCCATCATGA...............................................................................GTACGCGACACCATTTGGTTTGACATCTGAGTATGCTCACCCTGCTGAAATTCTCTTCCTTGGATTTGCTACGGTCATTGGTCCTGCAATCACCGGGCCACATTTGATAACATTATATCTATGGATCTCTCTTAGAATCCTCGAGACAGTCGAGGCACATTCTGGATACCATTTCCCCTGGAGCCCGTCAAACTTCTTGCCATTATATGGAGG................................................................................GTCTGATTTTCATGATTACCATCATCGACTGCTCTACACAAAGTCTGGAAACTACTCATCGACTTTCGTTTACATGGACTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTGGTACTGATAAGGGTTACAGAAAGTTGAAGATGCTGAAGGAGCAAGAGGGCAAAGCAATGTAAACAAGATGGGAAAGTAGAGGGGGAATAAAATTACATGTTTGTTTGAGTGTATAAGAAATAGTACTGAACAGATTCTATTAGTAATGATGAGAATAATAACGTAAGGATTAGTTATGTTGGCATTATTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706128" ref_strand="+" ref_description="SGN-E706128 [FA29AD04]">
      <seq>atggcttccatgatcgaatctgcttgggcgtttcttcttgcaaattttagtgatttccaattgacttctcttggaggtttcattgttcatgagagcgccttcttcttgtctggaatccctttcatccttttcgaaaaggcagggtggtttggcaagtacaaaattcagaaaaagaccaacaccccggaagcccagcagaaatgtattactcgtctgctgatatttcatttttgtgttaatcttccaatcctgattgttacgtatccgctctttaaattcatggggatgcgatctactcttccattgccatcctggaaagtggtttcaacccaagttttattctatttcatcttggaggatttcgtattttactggggacacagagttttacatacgaaatggctctacaagcacgtccacagtgtccatcatgagtacgcgacaccatttggtttgacatctgagtatgctcaccctgctgaaattctcttccttggatttgctacggtcattggtcctgcaatcaccgggccacatttgataacattatatctatggatctctcttagaatcctcgagacagtcgaggcacattctggataccatttcccctggagcccgtcaaacttcttgccattatatggagggtctgattttcatgattaccatcatcgactgctctacacaaagtctggaaactactcatcgactttcgtttacatggactggttatttggtactgataagggttacagaaagttgaaaatgctgaaagagcaagagggcaaaacaatgtaaacaagatgggaaagtagagggggaataaaattacatgtttgtttgagtgtataaaaaatagtactgaacagattctattaataatgatgaaattaataccgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52262" stop="49221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51961" g_stop="51824" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="168" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51823" i_stop="51667" i_length="157">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51666" g_stop="51521" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="314" r_length="146" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51520" i_stop="50854" i_length="667">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50853" g_stop="50734" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="434" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50733" i_stop="50655" i_length="79">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50654" g_stop="50442" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="647" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50441" i_stop="50362" i_length="80">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.724" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50361" g_stop="50281" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="728" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50280" i_stop="49695" i_length="586">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49694" g_stop="49525" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="898" r_length="170" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="901" polyA_stop="914"/>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E706128" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51961" e_stop="51824"/>
          <exon e_start="51666" e_stop="51521"/>
          <exon e_start="50853" e_stop="50734"/>
          <exon e_start="50654" e_stop="50442"/>
          <exon e_start="50361" e_stop="50281"/>
          <exon e_start="49694" e_stop="49525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTGCAAATTTTAGTGATTTCCAATTGACTTCTCTTGGAGGTTTCATTGTTCATGAGAGCGCTTTCTTCTTGTCTGGAATCCCTTTCATCCTTTTCGAAAAGGCAGGGTGGTTTGGCAAGTACAAAATTCAGGTAATGGAATGATGTTTCTTGTTCAAAATGATCCCAAACATCAACGATATTCGACTCAAGACTAGTACTAGTACTCGTGCACGAGTACGTAGTTCATTCCTATCATTATTCACATGAATTTTCATTTTGTTGCACTGTCGACCTATTTGTGTTGCAGAAAAAGACCAACACCCCGGAAGCTCAGCAGAAATGTATTACTCGTCTGCTGATATTTCATTTTTGTGTTAATCTTCCAATCCTGATAGTTACGTATCCGCTCTTTAAATTCATGGGGATGCGATCTACTCTTCCATTGCCATCCTGGTATTTTCTGCTTCTCTGTATACTAAGCTTTACTTGTGTGATTGCATACCTTTTACTGATCTTGCAATCTTCGTTTCTTTTGTTTTGCTTTCTACTTCTTTACGGTTCTCTTTTTAGAATCAATAACCATTTTGTTAGCCTGATGCATTGCATGTTTAGGCTATGGTTATCAAAATAGGCTAACTGAATGGGAGAAGTAGTACAACAAGATTATATGTACAGTTGTTAGATTGACAACGTTATGCAGAAGTGAATGTTGTGAACCTCTATGGTCCAACATATTCGATAGAAGGTGCACGTAGCCTCACATAGAGAATAAGTTTTCTCTGACTCATGTCCTACAGGGACATCGAGATCAGATCACTGGTATATAGATGGGCAAAATCATGGTGGTTGAACAGGAGAAGGTAGATCTAAAATCATACGGAATGAAGTTGTCTTGAAAGACCTATCATCCCTTTAGATTTCATGCAAACATTGAGAAACATATGAAACAAACAACGGAAAAGAACATACCTGTATTGGTGATACCAATTAATTGATAAATGAGGATTCATGCAATCGACTCCAACTAGCTTGGAATTGAGGCGTAGTAGTTGTATAATTTCGCAAGTATCTTTTCTGCTTATTGATCAGAGTAAATTGCAAATACTTCTTTTTTCTGCAGGAAAGTGGTTTCAACCCAAGTTTTATTCTATTTCATCTTGGAGGATTTCGTATTTTACTGGGGACACAGAGTTTTACATACGAAATGGCTCTACAAGCACGTCCACAGTGTCCATCATGAGTATGTGAACTACTTAAATTCTTCGAGTTTCACTTTTTCTCCCCATGAAATTCACAACTTTCTGCTTTTGTTACACTAGGTACGCGACACCATTTGGTTTGACATCTGAGTATGCTCACCCTGCTGAAATTCTCTTCCTTGGATTTGCTACGGTCATTGGTCCTGCAATCACCGGGCCACATTTGATAACATTATATCTATGGATCTCTCTTAGAATCCTCGAGACAGTCGAGGCACATTCTGGATACCATTTCCCCTGGAGCCCGTCAAACTTCTTGCCATTATATGGAGGGTCTGTACATAGCTTTACGTATTCATCTGTTTTACACGTCGTGAATGATGTTCTTATAGTTGCTAGTGTTTTGTTCCCAGGTCTGATTTTCATGATTACCATCATCGACTGCTCTACACAAAGTCTGGAAACTACTCATCGACTTTCGTTTACATGGACTGGTAAGGCTTCCATACATTGCCTTTTACACTAGTACTCTAGTAAACAGATAACTCTGTACATATTCAAAGCTACTAGGTTCGGCTGATCCTGTGACTAATACTCTAGCTCCGCCCCTAGTTCCAAAACTTATACATCTCCCTGCTTATCCTCAAGACAACTTGGTCTTTTGCAGAATTTCTCTTAGCAATTCTTGATCGTTGCTGTTGTTTTTGTTGTTGTTCTGCTTCCCAACTAATATTGACTGTGGGAGTTCAAAATTTTAGTATATATATCTCTTTCAGAAGTTTTTTTTACCTACACTACTAGAAAATATAGAATTAGTGACGGAAATTGTCGATAATCCCTAATTAATCTGTAGCTAAAAAGCTCGATAACTAATCATAGCTTAATAGGATTAGCATGCAATTTGCTGTTTAGCTATGAAATTTTGTCCATCACTAATTCCTTGTATTCTAGCAATGCTGTATACGTACTATTACTTTCTGTATACACTGTATAATTTTTTGATGAAATGTGTTCGAGTGACCGCTCTTGGATCGATATGTCGCTAGGCCGCTAAGACCTATATCTCTCTTTTTTATTTAGGTTATTTGGTACTGATAAGGGTTACAGAAAGTTGAAGATGCTGAAGGAGCAAGAGGGCAAAGCAATGTAAACAAGATGGGAAAGTAGAGGGGGAATAAAATTACATGTTTGTTTGAGTGTATAAGAAATAGTACTGAACAGATTCTATTAGTAATGATGAGATTAATAAC</genome_strand>
        <mrna_strand>TTTCTTCTTGCAAATTTTAGTGATTTCCAATTGACTTCTCTTGGAGGTTTCATTGTTCATGAGAGCGCCTTCTTCTTGTCTGGAATCCCTTTCATCCTTTTCGAAAAGGCAGGGTGGTTTGGCAAGTACAAAATTCAG.............................................................................................................................................................AAAAAGACCAACACCCCGGAAGCCCAGCAGAAATGTATTACTCGTCTGCTGATATTTCATTTTTGTGTTAATCTTCCAATCCTGATTGTTACGTATCCGCTCTTTAAATTCATGGGGATGCGATCTACTCTTCCATTGCCATCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTGGTTTCAACCCAAGTTTTATTCTATTTCATCTTGGAGGATTTCGTATTTTACTGGGGACACAGAGTTTTACATACGAAATGGCTCTACAAGCACGTCCACAGTGTCCATCATGA...............................................................................GTACGCGACACCATTTGGTTTGACATCTGAGTATGCTCACCCTGCTGAAATTCTCTTCCTTGGATTTGCTACGGTCATTGGTCCTGCAATCACCGGGCCACATTTGATAACATTATATCTATGGATCTCTCTTAGAATCCTCGAGACAGTCGAGGCACATTCTGGATACCATTTCCCCTGGAGCCCGTCAAACTTCTTGCCATTATATGGAGG................................................................................GTCTGATTTTCATGATTACCATCATCGACTGCTCTACACAAAGTCTGGAAACTACTCATCGACTTTCGTTTACATGGACTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTGGTACTGATAAGGGTTACAGAAAGTTGAAAATGCTGAAAGAGCAAGAGGGCAAAACAATGTAAACAAGATGGGAAAGTAGAGGGGGAATAAAATTACATGTTTGTTTGAGTGTATAAAAAATAGTACTGAACAGATTCTATTAATAATGATGAAATTAATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285528" ref_strand="+" ref_description="SGN-E285528 [cLES-10-O7]">
      <seq>ttttctgcaggaaagtggtttcaacccaagttttattctatttcatcttggaggatttcgtattttactggggacacagagttttacatacgaaatggctctacaagcacgtccacagtgtccatcatgagtacgcgacaccatttggttagacatctgagtatgctcaccctgctgaaattctcttccttggatttgctacggtcattggtcctgcaatcaccgggccacatttgataacattatatctatggatctctcttagaatcctcgagacagtcgaggcacattctggataccatttcccctggagcccgtcaaacttcttgccattatatggagggtctgattttcatgattaccatcatcgactgctctacacaaagtctggaaactactcatcgactgtcgtttacatggactggttatttggtactgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51163" stop="49977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50863" g_stop="50734" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50733" i_stop="50655" i_length="79">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50654" g_stop="50442" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="343" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50441" i_stop="50362" i_length="80">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.724" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50361" g_stop="50281" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="424" r_length="81" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E285528" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50863" e_stop="50734"/>
          <exon e_start="50654" e_stop="50442"/>
          <exon e_start="50361" e_stop="50281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTGCAGGAAAGTGGTTTCAACCCAAGTTTTATTCTATTTCATCTTGGAGGATTTCGTATTTTACTGGGGACACAGAGTTTTACATACGAAATGGCTCTACAAGCACGTCCACAGTGTCCATCATGAGTATGTGAACTACTTAAATTCTTCGAGTTTCACTTTTTCTCCCCATGAAATTCACAACTTTCTGCTTTTGTTACACTAGGTACGCGACACCATTTGGTTTGACATCTGAGTATGCTCACCCTGCTGAAATTCTCTTCCTTGGATTTGCTACGGTCATTGGTCCTGCAATCACCGGGCCACATTTGATAACATTATATCTATGGATCTCTCTTAGAATCCTCGAGACAGTCGAGGCACATTCTGGATACCATTTCCCCTGGAGCCCGTCAAACTTCTTGCCATTATATGGAGGGTCTGTACATAGCTTTACGTATTCATCTGTTTTACACGTCGTGAATGATGTTCTTATAGTTGCTAGTGTTTTGTTCCCAGGTCTGATTTTCATGATTACCATCATCGACTGCTCTACACAAAGTCTGGAAACTACTCATCGACTTTCGTTTACATGGACTG</genome_strand>
        <mrna_strand>TTTTCTGCAGGAAAGTGGTTTCAACCCAAGTTTTATTCTATTTCATCTTGGAGGATTTCGTATTTTACTGGGGACACAGAGTTTTACATACGAAATGGCTCTACAAGCACGTCCACAGTGTCCATCATGA...............................................................................GTACGCGACACCATTTGGTTAGACATCTGAGTATGCTCACCCTGCTGAAATTCTCTTCCTTGGATTTGCTACGGTCATTGGTCCTGCAATCACCGGGCCACATTTGATAACATTATATCTATGGATCTCTCTTAGAATCCTCGAGACAGTCGAGGCACATTCTGGATACCATTTCCCCTGGAGCCCGTCAAACTTCTTGCCATTATATGGAGG................................................................................GTCTGATTTTCATGATTACCATCATCGACTGCTCTACACAAAGTCTGGAAACTACTCATCGACTGTCGTTTACATGGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285524" ref_strand="+" ref_description="SGN-E285524 [cLES-10-M23]">
      <seq>ttttctgcaggaaagtggtttcaacccaagttttattctatttcatcttggaggatttcgtattttactggggacacagagttttacatacgaaatggctctacaagcacgtccacagtgtccatcatgagtacgcgacaccatttggtttgacatctgagtatgctcaccctgctgaaattctcttccttggatttgctacggtcattggtcctgcaatcaccgggccacatttgataacattatatctatggatctctcttagaatcctcgagacagtcgaggcacattctggataccatttcccctggagcccgtcaaacttcttgccattatatggagggtctgattttcatgattaccatcatcgactgctctacacaaagtctggaaactactcatcgactttcgtttacatggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51163" stop="49982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50863" g_stop="50734" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50733" i_stop="50655" i_length="79">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50654" g_stop="50442" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="343" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50441" i_stop="50362" i_length="80">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.724" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50361" g_stop="50282" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="423" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E285524" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50863" e_stop="50734"/>
          <exon e_start="50654" e_stop="50442"/>
          <exon e_start="50361" e_stop="50282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTGCAGGAAAGTGGTTTCAACCCAAGTTTTATTCTATTTCATCTTGGAGGATTTCGTATTTTACTGGGGACACAGAGTTTTACATACGAAATGGCTCTACAAGCACGTCCACAGTGTCCATCATGAGTATGTGAACTACTTAAATTCTTCGAGTTTCACTTTTTCTCCCCATGAAATTCACAACTTTCTGCTTTTGTTACACTAGGTACGCGACACCATTTGGTTTGACATCTGAGTATGCTCACCCTGCTGAAATTCTCTTCCTTGGATTTGCTACGGTCATTGGTCCTGCAATCACCGGGCCACATTTGATAACATTATATCTATGGATCTCTCTTAGAATCCTCGAGACAGTCGAGGCACATTCTGGATACCATTTCCCCTGGAGCCCGTCAAACTTCTTGCCATTATATGGAGGGTCTGTACATAGCTTTACGTATTCATCTGTTTTACACGTCGTGAATGATGTTCTTATAGTTGCTAGTGTTTTGTTCCCAGGTCTGATTTTCATGATTACCATCATCGACTGCTCTACACAAAGTCTGGAAACTACTCATCGACTTTCGTTTACATGGACT</genome_strand>
        <mrna_strand>TTTTCTGCAGGAAAGTGGTTTCAACCCAAGTTTTATTCTATTTCATCTTGGAGGATTTCGTATTTTACTGGGGACACAGAGTTTTACATACGAAATGGCTCTACAAGCACGTCCACAGTGTCCATCATGA...............................................................................GTACGCGACACCATTTGGTTTGACATCTGAGTATGCTCACCCTGCTGAAATTCTCTTCCTTGGATTTGCTACGGTCATTGGTCCTGCAATCACCGGGCCACATTTGATAACATTATATCTATGGATCTCTCTTAGAATCCTCGAGACAGTCGAGGCACATTCTGGATACCATTTCCCCTGGAGCCCGTCAAACTTCTTGCCATTATATGGAGG................................................................................GTCTGATTTTCATGATTACCATCATCGACTGCTCTACACAAAGTCTGGAAACTACTCATCGACTTTCGTTTACATGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322919" ref_strand="+" ref_description="SGN-E322919 [cTOB-30-A4]">
      <seq>gtggtttggcaagtacaaaattcagaaaaagaccaacaccccggaagctcagcagaaatgtattactcgtctgctgatatttcatttttgtgttaatcttccaatcctgatagttacgtatccgctctttaaattcatggggatgcgatctactcttccattgccatcctggaaagtggtttcaacccaagttttattctatttcatcttggaggatttcgtattttactggggacacagagttttacatacgaaatggctctacaagcacgtccacagtgtccatcatgagtacgcgacaccatttggtttgacatctgagtatgctcaccctgctgaaattctcttccttggatttgctacggtcattggtcctgcaatcaccgggccacatttgataacattatatctatggatctctcttagaatcctcgagacagtcgaggcacattctggataccatttcccctggagcccgtcaaacttcttgccattatatgganggtctgattttcatgattaccatcatcgactgctctacacaaagtctggaaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52148" stop="50008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51848" g_stop="51824" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51823" i_stop="51667" i_length="157">
            <donor d_prob="0.874" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51666" g_stop="51521" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="171" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51520" i_stop="50854" i_length="667">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50853" g_stop="50734" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="291" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50733" i_stop="50655" i_length="79">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50654" g_stop="50442" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="504" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50441" i_stop="50362" i_length="80">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.724" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50361" g_stop="50308" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="558" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E322919" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51848" e_stop="51824"/>
          <exon e_start="51666" e_stop="51521"/>
          <exon e_start="50853" e_stop="50734"/>
          <exon e_start="50654" e_stop="50442"/>
          <exon e_start="50361" e_stop="50308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTTTGGCAAGTACAAAATTCAGGTAATGGAATGATGTTTCTTGTTCAAAATGATCCCAAACATCAACGATATTCGACTCAAGACTAGTACTAGTACTCGTGCACGAGTACGTAGTTCATTCCTATCATTATTCACATGAATTTTCATTTTGTTGCACTGTCGACCTATTTGTGTTGCAGAAAAAGACCAACACCCCGGAAGCTCAGCAGAAATGTATTACTCGTCTGCTGATATTTCATTTTTGTGTTAATCTTCCAATCCTGATAGTTACGTATCCGCTCTTTAAATTCATGGGGATGCGATCTACTCTTCCATTGCCATCCTGGTATTTTCTGCTTCTCTGTATACTAAGCTTTACTTGTGTGATTGCATACCTTTTACTGATCTTGCAATCTTCGTTTCTTTTGTTTTGCTTTCTACTTCTTTACGGTTCTCTTTTTAGAATCAATAACCATTTTGTTAGCCTGATGCATTGCATGTTTAGGCTATGGTTATCAAAATAGGCTAACTGAATGGGAGAAGTAGTACAACAAGATTATATGTACAGTTGTTAGATTGACAACGTTATGCAGAAGTGAATGTTGTGAACCTCTATGGTCCAACATATTCGATAGAAGGTGCACGTAGCCTCACATAGAGAATAAGTTTTCTCTGACTCATGTCCTACAGGGACATCGAGATCAGATCACTGGTATATAGATGGGCAAAATCATGGTGGTTGAACAGGAGAAGGTAGATCTAAAATCATACGGAATGAAGTTGTCTTGAAAGACCTATCATCCCTTTAGATTTCATGCAAACATTGAGAAACATATGAAACAAACAACGGAAAAGAACATACCTGTATTGGTGATACCAATTAATTGATAAATGAGGATTCATGCAATCGACTCCAACTAGCTTGGAATTGAGGCGTAGTAGTTGTATAATTTCGCAAGTATCTTTTCTGCTTATTGATCAGAGTAAATTGCAAATACTTCTTTTTTCTGCAGGAAAGTGGTTTCAACCCAAGTTTTATTCTATTTCATCTTGGAGGATTTCGTATTTTACTGGGGACACAGAGTTTTACATACGAAATGGCTCTACAAGCACGTCCACAGTGTCCATCATGAGTATGTGAACTACTTAAATTCTTCGAGTTTCACTTTTTCTCCCCATGAAATTCACAACTTTCTGCTTTTGTTACACTAGGTACGCGACACCATTTGGTTTGACATCTGAGTATGCTCACCCTGCTGAAATTCTCTTCCTTGGATTTGCTACGGTCATTGGTCCTGCAATCACCGGGCCACATTTGATAACATTATATCTATGGATCTCTCTTAGAATCCTCGAGACAGTCGAGGCACATTCTGGATACCATTTCCCCTGGAGCCCGTCAAACTTCTTGCCATTATATGGAGGGTCTGTACATAGCTTTACGTATTCATCTGTTTTACACGTCGTGAATGATGTTCTTATAGTTGCTAGTGTTTTGTTCCCAGGTCTGATTTTCATGATTACCATCATCGACTGCTCTACACAAAGTCTGGAAACTA</genome_strand>
        <mrna_strand>GTGGTTTGGCAAGTACAAAATTCAG.............................................................................................................................................................AAAAAGACCAACACCCCGGAAGCTCAGCAGAAATGTATTACTCGTCTGCTGATATTTCATTTTTGTGTTAATCTTCCAATCCTGATAGTTACGTATCCGCTCTTTAAATTCATGGGGATGCGATCTACTCTTCCATTGCCATCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTGGTTTCAACCCAAGTTTTATTCTATTTCATCTTGGAGGATTTCGTATTTTACTGGGGACACAGAGTTTTACATACGAAATGGCTCTACAAGCACGTCCACAGTGTCCATCATGA...............................................................................GTACGCGACACCATTTGGTTTGACATCTGAGTATGCTCACCCTGCTGAAATTCTCTTCCTTGGATTTGCTACGGTCATTGGTCCTGCAATCACCGGGCCACATTTGATAACATTATATCTATGGATCTCTCTTAGAATCCTCGAGACAGTCGAGGCACATTCTGGATACCATTTCCCCTGGAGCCCGTCAAACTTCTTGCCATTATATGGANG................................................................................GTCTGATTTTCATGATTACCATCATCGACTGCTCTACACAAAGTCTGGAAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347615" ref_strand="+" ref_description="SGN-E347615 [cTOF-26-H3]">
      <seq>tgatcgaatctgcttgggcgtttcttcttgcaaattttagtgatttccaattgacttctcttggaggtttcattgttcatgagagcgctttcttcttgtctggaatccctttcatccttttcgaaaaggcagggtggtttggcaagtacaaaattcagaaaaagaccaacaccccggaagctcagcagaaatgtattactcgtctgctgatatttcatttttgtgttaatcttccaatcctgatagttacgtatccgctctttaaattcatggggatgcgatctactcttccattgccatcctggaaagtggtttcaacccaagttttattctatttcatcttggaggatttcgtattttactggggacacagagttttacatacgaaatggctctacaagcacgtccacagtgtccatcatgagtacgcgacaccatttggtttgacatctgagtatgctcaccctgctgaaattctcttccttggatttgctacggtcattggtcctgcaatcaccgggccacatttgataacattatatctatggatctctcttagaatcctcgagacagtcgaggcacattctggataccatttcccctgnagcccgtcaaacttcttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52262" stop="50154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51961" g_stop="51824" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="158" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51823" i_stop="51667" i_length="157">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51666" g_stop="51521" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="304" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51520" i_stop="50854" i_length="667">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50853" g_stop="50734" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="424" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50733" i_stop="50655" i_length="79">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50654" g_stop="50454" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="625" r_length="201" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E347615" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51961" e_stop="51824"/>
          <exon e_start="51666" e_stop="51521"/>
          <exon e_start="50853" e_stop="50734"/>
          <exon e_start="50654" e_stop="50454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTGCAAATTTTAGTGATTTCCAATTGACTTCTCTTGGAGGTTTCATTGTTCATGAGAGCGCTTTCTTCTTGTCTGGAATCCCTTTCATCCTTTTCGAAAAGGCAGGGTGGTTTGGCAAGTACAAAATTCAGGTAATGGAATGATGTTTCTTGTTCAAAATGATCCCAAACATCAACGATATTCGACTCAAGACTAGTACTAGTACTCGTGCACGAGTACGTAGTTCATTCCTATCATTATTCACATGAATTTTCATTTTGTTGCACTGTCGACCTATTTGTGTTGCAGAAAAAGACCAACACCCCGGAAGCTCAGCAGAAATGTATTACTCGTCTGCTGATATTTCATTTTTGTGTTAATCTTCCAATCCTGATAGTTACGTATCCGCTCTTTAAATTCATGGGGATGCGATCTACTCTTCCATTGCCATCCTGGTATTTTCTGCTTCTCTGTATACTAAGCTTTACTTGTGTGATTGCATACCTTTTACTGATCTTGCAATCTTCGTTTCTTTTGTTTTGCTTTCTACTTCTTTACGGTTCTCTTTTTAGAATCAATAACCATTTTGTTAGCCTGATGCATTGCATGTTTAGGCTATGGTTATCAAAATAGGCTAACTGAATGGGAGAAGTAGTACAACAAGATTATATGTACAGTTGTTAGATTGACAACGTTATGCAGAAGTGAATGTTGTGAACCTCTATGGTCCAACATATTCGATAGAAGGTGCACGTAGCCTCACATAGAGAATAAGTTTTCTCTGACTCATGTCCTACAGGGACATCGAGATCAGATCACTGGTATATAGATGGGCAAAATCATGGTGGTTGAACAGGAGAAGGTAGATCTAAAATCATACGGAATGAAGTTGTCTTGAAAGACCTATCATCCCTTTAGATTTCATGCAAACATTGAGAAACATATGAAACAAACAACGGAAAAGAACATACCTGTATTGGTGATACCAATTAATTGATAAATGAGGATTCATGCAATCGACTCCAACTAGCTTGGAATTGAGGCGTAGTAGTTGTATAATTTCGCAAGTATCTTTTCTGCTTATTGATCAGAGTAAATTGCAAATACTTCTTTTTTCTGCAGGAAAGTGGTTTCAACCCAAGTTTTATTCTATTTCATCTTGGAGGATTTCGTATTTTACTGGGGACACAGAGTTTTACATACGAAATGGCTCTACAAGCACGTCCACAGTGTCCATCATGAGTATGTGAACTACTTAAATTCTTCGAGTTTCACTTTTTCTCCCCATGAAATTCACAACTTTCTGCTTTTGTTACACTAGGTACGCGACACCATTTGGTTTGACATCTGAGTATGCTCACCCTGCTGAAATTCTCTTCCTTGGATTTGCTACGGTCATTGGTCCTGCAATCACCGGGCCACATTTGATAACATTATATCTATGGATCTCTCTTAGAATCCTCGAGACAGTCGAGGCACATTCTGGATACCATTTCCCCTGGAGCCCGTCAAACTTCTTGCC</genome_strand>
        <mrna_strand>TTTCTTCTTGCAAATTTTAGTGATTTCCAATTGACTTCTCTTGGAGGTTTCATTGTTCATGAGAGCGCTTTCTTCTTGTCTGGAATCCCTTTCATCCTTTTCGAAAAGGCAGGGTGGTTTGGCAAGTACAAAATTCAG.............................................................................................................................................................AAAAAGACCAACACCCCGGAAGCTCAGCAGAAATGTATTACTCGTCTGCTGATATTTCATTTTTGTGTTAATCTTCCAATCCTGATAGTTACGTATCCGCTCTTTAAATTCATGGGGATGCGATCTACTCTTCCATTGCCATCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTGGTTTCAACCCAAGTTTTATTCTATTTCATCTTGGAGGATTTCGTATTTTACTGGGGACACAGAGTTTTACATACGAAATGGCTCTACAAGCACGTCCACAGTGTCCATCATGA...............................................................................GTACGCGACACCATTTGGTTTGACATCTGAGTATGCTCACCCTGCTGAAATTCTCTTCCTTGGATTTGCTACGGTCATTGGTCCTGCAATCACCGGGCCACATTTGATAACATTATATCTATGGATCTCTCTTAGAATCCTCGAGACAGTCGAGGCACATTCTGGATACCATTTCCCCTGNAGCCCGTCAAACTTCTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336940" ref_strand="+" ref_description="SGN-E336940 [cTOE-5-M5]">
      <seq>tttcttcttgcaaattttagtgatttccaattgacttctcttggaggtttcattgttcatgagagcgctttcttcttgtctggaatccctttcatccttttcgaaaaggcagggtggtttggcaagtacaaaattcagaaaaagaccaacaccccggaagctcagcagaaatgtattactcgtctgctgatatttcatttttgtgttaatcttccaatcctgatagttacgtatccgctctttaaattcatggggatgcgatctactcttccattgccatcctggaaagtggtttcaacccaagttttattctatttcatcttggaggatttcgtattttactggggacacagagttttacatacgaaatggctctacaagcacgtccacagtgtccatcatgagtacgcgacaccatttggtttgacatctgagtatgctcaccctgctgaaattctcttccttggatttgctacggtcattggtcctgcaatcaccgggccacatttgataacattatatctatggatctctcttagaatcctcgagacagtcgaggcacattctggataccattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52261" stop="50181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51961" g_stop="51824" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51823" i_stop="51667" i_length="157">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51666" g_stop="51521" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="284" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51520" i_stop="50854" i_length="667">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50853" g_stop="50734" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="404" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50733" i_stop="50655" i_length="79">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50654" g_stop="50481" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="578" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E336940" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51961" e_stop="51824"/>
          <exon e_start="51666" e_stop="51521"/>
          <exon e_start="50853" e_stop="50734"/>
          <exon e_start="50654" e_stop="50481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTGCAAATTTTAGTGATTTCCAATTGACTTCTCTTGGAGGTTTCATTGTTCATGAGAGCGCTTTCTTCTTGTCTGGAATCCCTTTCATCCTTTTCGAAAAGGCAGGGTGGTTTGGCAAGTACAAAATTCAGGTAATGGAATGATGTTTCTTGTTCAAAATGATCCCAAACATCAACGATATTCGACTCAAGACTAGTACTAGTACTCGTGCACGAGTACGTAGTTCATTCCTATCATTATTCACATGAATTTTCATTTTGTTGCACTGTCGACCTATTTGTGTTGCAGAAAAAGACCAACACCCCGGAAGCTCAGCAGAAATGTATTACTCGTCTGCTGATATTTCATTTTTGTGTTAATCTTCCAATCCTGATAGTTACGTATCCGCTCTTTAAATTCATGGGGATGCGATCTACTCTTCCATTGCCATCCTGGTATTTTCTGCTTCTCTGTATACTAAGCTTTACTTGTGTGATTGCATACCTTTTACTGATCTTGCAATCTTCGTTTCTTTTGTTTTGCTTTCTACTTCTTTACGGTTCTCTTTTTAGAATCAATAACCATTTTGTTAGCCTGATGCATTGCATGTTTAGGCTATGGTTATCAAAATAGGCTAACTGAATGGGAGAAGTAGTACAACAAGATTATATGTACAGTTGTTAGATTGACAACGTTATGCAGAAGTGAATGTTGTGAACCTCTATGGTCCAACATATTCGATAGAAGGTGCACGTAGCCTCACATAGAGAATAAGTTTTCTCTGACTCATGTCCTACAGGGACATCGAGATCAGATCACTGGTATATAGATGGGCAAAATCATGGTGGTTGAACAGGAGAAGGTAGATCTAAAATCATACGGAATGAAGTTGTCTTGAAAGACCTATCATCCCTTTAGATTTCATGCAAACATTGAGAAACATATGAAACAAACAACGGAAAAGAACATACCTGTATTGGTGATACCAATTAATTGATAAATGAGGATTCATGCAATCGACTCCAACTAGCTTGGAATTGAGGCGTAGTAGTTGTATAATTTCGCAAGTATCTTTTCTGCTTATTGATCAGAGTAAATTGCAAATACTTCTTTTTTCTGCAGGAAAGTGGTTTCAACCCAAGTTTTATTCTATTTCATCTTGGAGGATTTCGTATTTTACTGGGGACACAGAGTTTTACATACGAAATGGCTCTACAAGCACGTCCACAGTGTCCATCATGAGTATGTGAACTACTTAAATTCTTCGAGTTTCACTTTTTCTCCCCATGAAATTCACAACTTTCTGCTTTTGTTACACTAGGTACGCGACACCATTTGGTTTGACATCTGAGTATGCTCACCCTGCTGAAATTCTCTTCCTTGGATTTGCTACGGTCATTGGTCCTGCAATCACCGGGCCACATTTGATAACATTATATCTATGGATCTCTCTTAGAATCCTCGAGACAGTCGAGGCACATTCTGGATACCATTT</genome_strand>
        <mrna_strand>TTTCTTCTTGCAAATTTTAGTGATTTCCAATTGACTTCTCTTGGAGGTTTCATTGTTCATGAGAGCGCTTTCTTCTTGTCTGGAATCCCTTTCATCCTTTTCGAAAAGGCAGGGTGGTTTGGCAAGTACAAAATTCAG.............................................................................................................................................................AAAAAGACCAACACCCCGGAAGCTCAGCAGAAATGTATTACTCGTCTGCTGATATTTCATTTTTGTGTTAATCTTCCAATCCTGATAGTTACGTATCCGCTCTTTAAATTCATGGGGATGCGATCTACTCTTCCATTGCCATCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTGGTTTCAACCCAAGTTTTATTCTATTTCATCTTGGAGGATTTCGTATTTTACTGGGGACACAGAGTTTTACATACGAAATGGCTCTACAAGCACGTCCACAGTGTCCATCATGA...............................................................................GTACGCGACACCATTTGGTTTGACATCTGAGTATGCTCACCCTGCTGAAATTCTCTTCCTTGGATTTGCTACGGTCATTGGTCCTGCAATCACCGGGCCACATTTGATAACATTATATCTATGGATCTCTCTTAGAATCCTCGAGACAGTCGAGGCACATTCTGGATACCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313936" ref_strand="+" ref_description="SGN-E313936 [cTOA-19-I3]">
      <seq>tggcttccatgatcgaatctgcttgggcgtttcttcttgcaaattttagtgatttccaattgacttctcttggaggtttcattgttcatgagagcgctttcttcttgtctggaatccctttcatccttttcgaaaaggcagggtggtttggcaagtacaaaattcagaaaaagaccaacaccccggaagctcagcagaaatgtattactcgtctgctgatatttcatttttgtgttaatcttccaatcctgatagttacgtatccgctctttaaattcatggggatgcgatctactcttccattgccatcctggaaagtggtttcaacccaagttttattctatttcatcttggaggatttcgtattttactggggacacagagttttacatacgaaatggctctacaagcacgtccacagtgtccatcatgagtacgcgacaccatttggtttgacatctgagtatgctcaccctgctgaaattctcttccttggatttgctacggtcattggtcctgcaatcaccgggccacatttgataacattatatctatggatctctcttagaatcctcgagacagtcgaggcacattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52262" stop="50191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51961" g_stop="51824" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="167" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51823" i_stop="51667" i_length="157">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51666" g_stop="51521" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="313" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51520" i_stop="50854" i_length="667">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50853" g_stop="50734" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="433" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50733" i_stop="50655" i_length="79">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50654" g_stop="50491" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="597" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E313936" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51961" e_stop="51824"/>
          <exon e_start="51666" e_stop="51521"/>
          <exon e_start="50853" e_stop="50734"/>
          <exon e_start="50654" e_stop="50491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTGCAAATTTTAGTGATTTCCAATTGACTTCTCTTGGAGGTTTCATTGTTCATGAGAGCGCTTTCTTCTTGTCTGGAATCCCTTTCATCCTTTTCGAAAAGGCAGGGTGGTTTGGCAAGTACAAAATTCAGGTAATGGAATGATGTTTCTTGTTCAAAATGATCCCAAACATCAACGATATTCGACTCAAGACTAGTACTAGTACTCGTGCACGAGTACGTAGTTCATTCCTATCATTATTCACATGAATTTTCATTTTGTTGCACTGTCGACCTATTTGTGTTGCAGAAAAAGACCAACACCCCGGAAGCTCAGCAGAAATGTATTACTCGTCTGCTGATATTTCATTTTTGTGTTAATCTTCCAATCCTGATAGTTACGTATCCGCTCTTTAAATTCATGGGGATGCGATCTACTCTTCCATTGCCATCCTGGTATTTTCTGCTTCTCTGTATACTAAGCTTTACTTGTGTGATTGCATACCTTTTACTGATCTTGCAATCTTCGTTTCTTTTGTTTTGCTTTCTACTTCTTTACGGTTCTCTTTTTAGAATCAATAACCATTTTGTTAGCCTGATGCATTGCATGTTTAGGCTATGGTTATCAAAATAGGCTAACTGAATGGGAGAAGTAGTACAACAAGATTATATGTACAGTTGTTAGATTGACAACGTTATGCAGAAGTGAATGTTGTGAACCTCTATGGTCCAACATATTCGATAGAAGGTGCACGTAGCCTCACATAGAGAATAAGTTTTCTCTGACTCATGTCCTACAGGGACATCGAGATCAGATCACTGGTATATAGATGGGCAAAATCATGGTGGTTGAACAGGAGAAGGTAGATCTAAAATCATACGGAATGAAGTTGTCTTGAAAGACCTATCATCCCTTTAGATTTCATGCAAACATTGAGAAACATATGAAACAAACAACGGAAAAGAACATACCTGTATTGGTGATACCAATTAATTGATAAATGAGGATTCATGCAATCGACTCCAACTAGCTTGGAATTGAGGCGTAGTAGTTGTATAATTTCGCAAGTATCTTTTCTGCTTATTGATCAGAGTAAATTGCAAATACTTCTTTTTTCTGCAGGAAAGTGGTTTCAACCCAAGTTTTATTCTATTTCATCTTGGAGGATTTCGTATTTTACTGGGGACACAGAGTTTTACATACGAAATGGCTCTACAAGCACGTCCACAGTGTCCATCATGAGTATGTGAACTACTTAAATTCTTCGAGTTTCACTTTTTCTCCCCATGAAATTCACAACTTTCTGCTTTTGTTACACTAGGTACGCGACACCATTTGGTTTGACATCTGAGTATGCTCACCCTGCTGAAATTCTCTTCCTTGGATTTGCTACGGTCATTGGTCCTGCAATCACCGGGCCACATTTGATAACATTATATCTATGGATCTCTCTTAGAATCCTCGAGACAGTCGAGGCACATTCTG</genome_strand>
        <mrna_strand>TTTCTTCTTGCAAATTTTAGTGATTTCCAATTGACTTCTCTTGGAGGTTTCATTGTTCATGAGAGCGCTTTCTTCTTGTCTGGAATCCCTTTCATCCTTTTCGAAAAGGCAGGGTGGTTTGGCAAGTACAAAATTCAG.............................................................................................................................................................AAAAAGACCAACACCCCGGAAGCTCAGCAGAAATGTATTACTCGTCTGCTGATATTTCATTTTTGTGTTAATCTTCCAATCCTGATAGTTACGTATCCGCTCTTTAAATTCATGGGGATGCGATCTACTCTTCCATTGCCATCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTGGTTTCAACCCAAGTTTTATTCTATTTCATCTTGGAGGATTTCGTATTTTACTGGGGACACAGAGTTTTACATACGAAATGGCTCTACAAGCACGTCCACAGTGTCCATCATGA...............................................................................GTACGCGACACCATTTGGTTTGACATCTGAGTATGCTCACCCTGCTGAAATTCTCTTCCTTGGATTTGCTACGGTCATTGGTCCTGCAATCACCGGGCCACATTTGATAACATTATATCTATGGATCTCTCTTAGAATCCTCGAGACAGTCGAGGCACATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313972" ref_strand="+" ref_description="SGN-E313972 [cTOA-19-I16]">
      <seq>tggcttccatgatcgaatctgcttgggcgttgcttcttgcaaattttagtgatttccaattgacttctcttggaggtttcattgttcatgagagcgctttcttcttgtctggaatccctttcatccttttcgaaaaggcagggtggtttggcaagtacaaaattcagaaaaagaccaacaccccggaagctcagcagaaatgtattactcgtctgctgatatttcatttttgtgttaatcttccaatcctgatagttacgtatccgctctttaaattcatggggatgcgatctactcttccattgccatcctggaaagtggtttcaacccaagttttattctatttcatcttggaggatttcgtattttactggggacacagagttttacatacgaaatggctctacaagcacgtccacagtgtccatcatgagtacgcgacaccatttggtttgacatctgagtatgctcaccctgctgaaattctcttccttggatttgctacggtcattggtcctgcaatcaccgggccacatttgataacattatatctatggatctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52262" stop="50224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51961" g_stop="51824" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="167" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51823" i_stop="51667" i_length="157">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51666" g_stop="51521" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="313" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51520" i_stop="50854" i_length="667">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50853" g_stop="50734" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="433" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50733" i_stop="50655" i_length="79">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50654" g_stop="50524" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="564" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E313972" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51961" e_stop="51824"/>
          <exon e_start="51666" e_stop="51521"/>
          <exon e_start="50853" e_stop="50734"/>
          <exon e_start="50654" e_stop="50524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTGCAAATTTTAGTGATTTCCAATTGACTTCTCTTGGAGGTTTCATTGTTCATGAGAGCGCTTTCTTCTTGTCTGGAATCCCTTTCATCCTTTTCGAAAAGGCAGGGTGGTTTGGCAAGTACAAAATTCAGGTAATGGAATGATGTTTCTTGTTCAAAATGATCCCAAACATCAACGATATTCGACTCAAGACTAGTACTAGTACTCGTGCACGAGTACGTAGTTCATTCCTATCATTATTCACATGAATTTTCATTTTGTTGCACTGTCGACCTATTTGTGTTGCAGAAAAAGACCAACACCCCGGAAGCTCAGCAGAAATGTATTACTCGTCTGCTGATATTTCATTTTTGTGTTAATCTTCCAATCCTGATAGTTACGTATCCGCTCTTTAAATTCATGGGGATGCGATCTACTCTTCCATTGCCATCCTGGTATTTTCTGCTTCTCTGTATACTAAGCTTTACTTGTGTGATTGCATACCTTTTACTGATCTTGCAATCTTCGTTTCTTTTGTTTTGCTTTCTACTTCTTTACGGTTCTCTTTTTAGAATCAATAACCATTTTGTTAGCCTGATGCATTGCATGTTTAGGCTATGGTTATCAAAATAGGCTAACTGAATGGGAGAAGTAGTACAACAAGATTATATGTACAGTTGTTAGATTGACAACGTTATGCAGAAGTGAATGTTGTGAACCTCTATGGTCCAACATATTCGATAGAAGGTGCACGTAGCCTCACATAGAGAATAAGTTTTCTCTGACTCATGTCCTACAGGGACATCGAGATCAGATCACTGGTATATAGATGGGCAAAATCATGGTGGTTGAACAGGAGAAGGTAGATCTAAAATCATACGGAATGAAGTTGTCTTGAAAGACCTATCATCCCTTTAGATTTCATGCAAACATTGAGAAACATATGAAACAAACAACGGAAAAGAACATACCTGTATTGGTGATACCAATTAATTGATAAATGAGGATTCATGCAATCGACTCCAACTAGCTTGGAATTGAGGCGTAGTAGTTGTATAATTTCGCAAGTATCTTTTCTGCTTATTGATCAGAGTAAATTGCAAATACTTCTTTTTTCTGCAGGAAAGTGGTTTCAACCCAAGTTTTATTCTATTTCATCTTGGAGGATTTCGTATTTTACTGGGGACACAGAGTTTTACATACGAAATGGCTCTACAAGCACGTCCACAGTGTCCATCATGAGTATGTGAACTACTTAAATTCTTCGAGTTTCACTTTTTCTCCCCATGAAATTCACAACTTTCTGCTTTTGTTACACTAGGTACGCGACACCATTTGGTTTGACATCTGAGTATGCTCACCCTGCTGAAATTCTCTTCCTTGGATTTGCTACGGTCATTGGTCCTGCAATCACCGGGCCACATTTGATAACATTATATCTATGGATCTCTC</genome_strand>
        <mrna_strand>TTGCTTCTTGCAAATTTTAGTGATTTCCAATTGACTTCTCTTGGAGGTTTCATTGTTCATGAGAGCGCTTTCTTCTTGTCTGGAATCCCTTTCATCCTTTTCGAAAAGGCAGGGTGGTTTGGCAAGTACAAAATTCAG.............................................................................................................................................................AAAAAGACCAACACCCCGGAAGCTCAGCAGAAATGTATTACTCGTCTGCTGATATTTCATTTTTGTGTTAATCTTCCAATCCTGATAGTTACGTATCCGCTCTTTAAATTCATGGGGATGCGATCTACTCTTCCATTGCCATCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTGGTTTCAACCCAAGTTTTATTCTATTTCATCTTGGAGGATTTCGTATTTTACTGGGGACACAGAGTTTTACATACGAAATGGCTCTACAAGCACGTCCACAGTGTCCATCATGA...............................................................................GTACGCGACACCATTTGGTTTGACATCTGAGTATGCTCACCCTGCTGAAATTCTCTTCCTTGGATTTGCTACGGTCATTGGTCCTGCAATCACCGGGCCACATTTGATAACATTATATCTATGGATCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322761" ref_strand="+" ref_description="SGN-E322761 [cTOB-30-A5]">
      <seq>gtggtttggcaagtacaaaattcagaaaaagaccaacaccccggaagctcagcagaaatgtattactcgtctgctgatatttcatttttgtgttaatcttccaatcctgatagttacgtatccgctctttaaattcatggggatgcgatctactcttccattgccatcctggaaagtggtttcaacccaagttttattctatttcatcttggaggatttcgtattttactggggacacagagttttacatacgaaatggctctacaagcacgtccacagtgtccatcatgagtacgcgacaccatttggtttgacatctgagtatgctcaccctgctgaaattctcttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52148" stop="50294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51848" g_stop="51824" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51823" i_stop="51667" i_length="157">
            <donor d_prob="0.874" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51666" g_stop="51521" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="171" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51520" i_stop="50854" i_length="667">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50853" g_stop="50734" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="291" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50733" i_stop="50655" i_length="79">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50654" g_stop="50594" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="352" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E322761" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51848" e_stop="51824"/>
          <exon e_start="51666" e_stop="51521"/>
          <exon e_start="50853" e_stop="50734"/>
          <exon e_start="50654" e_stop="50594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTTTGGCAAGTACAAAATTCAGGTAATGGAATGATGTTTCTTGTTCAAAATGATCCCAAACATCAACGATATTCGACTCAAGACTAGTACTAGTACTCGTGCACGAGTACGTAGTTCATTCCTATCATTATTCACATGAATTTTCATTTTGTTGCACTGTCGACCTATTTGTGTTGCAGAAAAAGACCAACACCCCGGAAGCTCAGCAGAAATGTATTACTCGTCTGCTGATATTTCATTTTTGTGTTAATCTTCCAATCCTGATAGTTACGTATCCGCTCTTTAAATTCATGGGGATGCGATCTACTCTTCCATTGCCATCCTGGTATTTTCTGCTTCTCTGTATACTAAGCTTTACTTGTGTGATTGCATACCTTTTACTGATCTTGCAATCTTCGTTTCTTTTGTTTTGCTTTCTACTTCTTTACGGTTCTCTTTTTAGAATCAATAACCATTTTGTTAGCCTGATGCATTGCATGTTTAGGCTATGGTTATCAAAATAGGCTAACTGAATGGGAGAAGTAGTACAACAAGATTATATGTACAGTTGTTAGATTGACAACGTTATGCAGAAGTGAATGTTGTGAACCTCTATGGTCCAACATATTCGATAGAAGGTGCACGTAGCCTCACATAGAGAATAAGTTTTCTCTGACTCATGTCCTACAGGGACATCGAGATCAGATCACTGGTATATAGATGGGCAAAATCATGGTGGTTGAACAGGAGAAGGTAGATCTAAAATCATACGGAATGAAGTTGTCTTGAAAGACCTATCATCCCTTTAGATTTCATGCAAACATTGAGAAACATATGAAACAAACAACGGAAAAGAACATACCTGTATTGGTGATACCAATTAATTGATAAATGAGGATTCATGCAATCGACTCCAACTAGCTTGGAATTGAGGCGTAGTAGTTGTATAATTTCGCAAGTATCTTTTCTGCTTATTGATCAGAGTAAATTGCAAATACTTCTTTTTTCTGCAGGAAAGTGGTTTCAACCCAAGTTTTATTCTATTTCATCTTGGAGGATTTCGTATTTTACTGGGGACACAGAGTTTTACATACGAAATGGCTCTACAAGCACGTCCACAGTGTCCATCATGAGTATGTGAACTACTTAAATTCTTCGAGTTTCACTTTTTCTCCCCATGAAATTCACAACTTTCTGCTTTTGTTACACTAGGTACGCGACACCATTTGGTTTGACATCTGAGTATGCTCACCCTGCTGAAATTCTCTTCCTT</genome_strand>
        <mrna_strand>GTGGTTTGGCAAGTACAAAATTCAG.............................................................................................................................................................AAAAAGACCAACACCCCGGAAGCTCAGCAGAAATGTATTACTCGTCTGCTGATATTTCATTTTTGTGTTAATCTTCCAATCCTGATAGTTACGTATCCGCTCTTTAAATTCATGGGGATGCGATCTACTCTTCCATTGCCATCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTGGTTTCAACCCAAGTTTTATTCTATTTCATCTTGGAGGATTTCGTATTTTACTGGGGACACAGAGTTTTACATACGAAATGGCTCTACAAGCACGTCCACAGTGTCCATCATGA...............................................................................GTACGCGACACCATTTGGTTTGACATCTGAGTATGCTCACCCTGCTGAAATTCTCTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313096" ref_strand="+" ref_description="SGN-E313096 [cTOA-14-D22]">
      <seq>ggcttccatgatcgaatctgcttgggcgtttcttcttgcaaattttagtgatttccaattgacttctcttggaggtttcattgttcatgagagcgctttcttcttgtctggaatccctttcatccttttcgaaaaggcagggtggtttggcaagtacaaaattcagaaaaagaccaacaccccggaagctcagcagaaatgtattacttgtctgctgatatttcatttttgtgttaatcttccaatcctgatagttacgtatccgctctttaaattcatggggatgcgatctactcttccattgccatcctggaaagtggtttcaacccaagttttattctatttcatcttggaggatttcgtattttactggggacacagagttttacatacgaaatggctctacaagcacgtccacagtgtccatcatgagtacgcgacaccatttggtttgacatctgagtatgctcaccctgctgaaattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52262" stop="50301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51961" g_stop="51824" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="166" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51823" i_stop="51667" i_length="157">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51666" g_stop="51521" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="312" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51520" i_stop="50854" i_length="667">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50853" g_stop="50734" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="432" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50733" i_stop="50655" i_length="79">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50654" g_stop="50601" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="486" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E313096" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51961" e_stop="51824"/>
          <exon e_start="51666" e_stop="51521"/>
          <exon e_start="50853" e_stop="50734"/>
          <exon e_start="50654" e_stop="50601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTGCAAATTTTAGTGATTTCCAATTGACTTCTCTTGGAGGTTTCATTGTTCATGAGAGCGCTTTCTTCTTGTCTGGAATCCCTTTCATCCTTTTCGAAAAGGCAGGGTGGTTTGGCAAGTACAAAATTCAGGTAATGGAATGATGTTTCTTGTTCAAAATGATCCCAAACATCAACGATATTCGACTCAAGACTAGTACTAGTACTCGTGCACGAGTACGTAGTTCATTCCTATCATTATTCACATGAATTTTCATTTTGTTGCACTGTCGACCTATTTGTGTTGCAGAAAAAGACCAACACCCCGGAAGCTCAGCAGAAATGTATTACTCGTCTGCTGATATTTCATTTTTGTGTTAATCTTCCAATCCTGATAGTTACGTATCCGCTCTTTAAATTCATGGGGATGCGATCTACTCTTCCATTGCCATCCTGGTATTTTCTGCTTCTCTGTATACTAAGCTTTACTTGTGTGATTGCATACCTTTTACTGATCTTGCAATCTTCGTTTCTTTTGTTTTGCTTTCTACTTCTTTACGGTTCTCTTTTTAGAATCAATAACCATTTTGTTAGCCTGATGCATTGCATGTTTAGGCTATGGTTATCAAAATAGGCTAACTGAATGGGAGAAGTAGTACAACAAGATTATATGTACAGTTGTTAGATTGACAACGTTATGCAGAAGTGAATGTTGTGAACCTCTATGGTCCAACATATTCGATAGAAGGTGCACGTAGCCTCACATAGAGAATAAGTTTTCTCTGACTCATGTCCTACAGGGACATCGAGATCAGATCACTGGTATATAGATGGGCAAAATCATGGTGGTTGAACAGGAGAAGGTAGATCTAAAATCATACGGAATGAAGTTGTCTTGAAAGACCTATCATCCCTTTAGATTTCATGCAAACATTGAGAAACATATGAAACAAACAACGGAAAAGAACATACCTGTATTGGTGATACCAATTAATTGATAAATGAGGATTCATGCAATCGACTCCAACTAGCTTGGAATTGAGGCGTAGTAGTTGTATAATTTCGCAAGTATCTTTTCTGCTTATTGATCAGAGTAAATTGCAAATACTTCTTTTTTCTGCAGGAAAGTGGTTTCAACCCAAGTTTTATTCTATTTCATCTTGGAGGATTTCGTATTTTACTGGGGACACAGAGTTTTACATACGAAATGGCTCTACAAGCACGTCCACAGTGTCCATCATGAGTATGTGAACTACTTAAATTCTTCGAGTTTCACTTTTTCTCCCCATGAAATTCACAACTTTCTGCTTTTGTTACACTAGGTACGCGACACCATTTGGTTTGACATCTGAGTATGCTCACCCTGCTGAAATTCT</genome_strand>
        <mrna_strand>TTTCTTCTTGCAAATTTTAGTGATTTCCAATTGACTTCTCTTGGAGGTTTCATTGTTCATGAGAGCGCTTTCTTCTTGTCTGGAATCCCTTTCATCCTTTTCGAAAAGGCAGGGTGGTTTGGCAAGTACAAAATTCAG.............................................................................................................................................................AAAAAGACCAACACCCCGGAAGCTCAGCAGAAATGTATTACTTGTCTGCTGATATTTCATTTTTGTGTTAATCTTCCAATCCTGATAGTTACGTATCCGCTCTTTAAATTCATGGGGATGCGATCTACTCTTCCATTGCCATCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTGGTTTCAACCCAAGTTTTATTCTATTTCATCTTGGAGGATTTCGTATTTTACTGGGGACACAGAGTTTTACATACGAAATGGCTCTACAAGCACGTCCACAGTGTCCATCATGA...............................................................................GTACGCGACACCATTTGGTTTGACATCTGAGTATGCTCACCCTGCTGAAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464196" ref_strand="+" ref_description="SGN-E464196 [cPRO-17-C12]">
      <seq>cttccatgatcgaatctgcttgggcgtttcttcttgcaaattttagtgatttccaattgacttctcttggaggtttcattgttcatgagagtgccttcttcttgtctggaatcccattcatcctttttgaaagggcagggtggtttggcaagtacaaaattcagaaaaagaccaacaccccggaagctcagcagaaatgtattactcgtctgctgatgtttcatttttgtgttaatcttccaatcctgattgttacgtatccgctctttaaattcatggggatgcgatctactctttcattgccgtcctggaaagcagattcaaccccagctttattctatttcatcttggaggatttcgtattttactggggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52262" stop="50488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51961" g_stop="51824" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="164" r_length="138" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51823" i_stop="51667" i_length="157">
            <donor d_prob="0.874" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51666" g_stop="51521" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="310" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51520" i_stop="50854" i_length="667">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.975" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50853" g_stop="50788" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="376" r_length="66" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E464196" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51961" e_stop="51824"/>
          <exon e_start="51666" e_stop="51521"/>
          <exon e_start="50853" e_stop="50788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTGCAAATTTTAGTGATTTCCAATTGACTTCTCTTGGAGGTTTCATTGTTCATGAGAGCGCTTTCTTCTTGTCTGGAATCCCTTTCATCCTTTTCGAAAAGGCAGGGTGGTTTGGCAAGTACAAAATTCAGGTAATGGAATGATGTTTCTTGTTCAAAATGATCCCAAACATCAACGATATTCGACTCAAGACTAGTACTAGTACTCGTGCACGAGTACGTAGTTCATTCCTATCATTATTCACATGAATTTTCATTTTGTTGCACTGTCGACCTATTTGTGTTGCAGAAAAAGACCAACACCCCGGAAGCTCAGCAGAAATGTATTACTCGTCTGCTGATATTTCATTTTTGTGTTAATCTTCCAATCCTGATAGTTACGTATCCGCTCTTTAAATTCATGGGGATGCGATCTACTCTTCCATTGCCATCCTGGTATTTTCTGCTTCTCTGTATACTAAGCTTTACTTGTGTGATTGCATACCTTTTACTGATCTTGCAATCTTCGTTTCTTTTGTTTTGCTTTCTACTTCTTTACGGTTCTCTTTTTAGAATCAATAACCATTTTGTTAGCCTGATGCATTGCATGTTTAGGCTATGGTTATCAAAATAGGCTAACTGAATGGGAGAAGTAGTACAACAAGATTATATGTACAGTTGTTAGATTGACAACGTTATGCAGAAGTGAATGTTGTGAACCTCTATGGTCCAACATATTCGATAGAAGGTGCACGTAGCCTCACATAGAGAATAAGTTTTCTCTGACTCATGTCCTACAGGGACATCGAGATCAGATCACTGGTATATAGATGGGCAAAATCATGGTGGTTGAACAGGAGAAGGTAGATCTAAAATCATACGGAATGAAGTTGTCTTGAAAGACCTATCATCCCTTTAGATTTCATGCAAACATTGAGAAACATATGAAACAAACAACGGAAAAGAACATACCTGTATTGGTGATACCAATTAATTGATAAATGAGGATTCATGCAATCGACTCCAACTAGCTTGGAATTGAGGCGTAGTAGTTGTATAATTTCGCAAGTATCTTTTCTGCTTATTGATCAGAGTAAATTGCAAATACTTCTTTTTTCTGCAGGAAAGTGGTTTCAACCCAAGTTTTATTCTATTTCATCTTGGAGGATTTCGTATTTTACTGGGGACA</genome_strand>
        <mrna_strand>TTTCTTCTTGCAAATTTTAGTGATTTCCAATTGACTTCTCTTGGAGGTTTCATTGTTCATGAGAGTGCCTTCTTCTTGTCTGGAATCCCATTCATCCTTTTTGAAAGGGCAGGGTGGTTTGGCAAGTACAAAATTCAG.............................................................................................................................................................AAAAAGACCAACACCCCGGAAGCTCAGCAGAAATGTATTACTCGTCTGCTGATGTTTCATTTTTGTGTTAATCTTCCAATCCTGATTGTTACGTATCCGCTCTTTAAATTCATGGGGATGCGATCTACTCTTTCATTGCCGTCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCAGATTCAACCCCAGCTTTATTCTATTTCATCTTGGAGGATTTCGTATTTTACTGGGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567770" ref_strand="+" ref_description="SGN-E567770 [11947]">
      <seq>ggcgtttcttcttgcaaatttcagtgatttccaattgacttctcttggaggtttcattgttcatgagagtgccttcttcttgtctggaatcccatttatcctttttgaaagggcagggtggtttggcaagtacaaaattcagaaaaagaccaacaccccggaagctcagcagaaatgtattactcgtctgctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52262" stop="51314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51961" g_stop="51824" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="142" r_length="138" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51823" i_stop="51667" i_length="157">
            <donor d_prob="0.874" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51666" g_stop="51614" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="195" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E567770" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>191</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51961" e_stop="51824"/>
          <exon e_start="51666" e_stop="51614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTGCAAATTTTAGTGATTTCCAATTGACTTCTCTTGGAGGTTTCATTGTTCATGAGAGCGCTTTCTTCTTGTCTGGAATCCCTTTCATCCTTTTCGAAAAGGCAGGGTGGTTTGGCAAGTACAAAATTCAGGTAATGGAATGATGTTTCTTGTTCAAAATGATCCCAAACATCAACGATATTCGACTCAAGACTAGTACTAGTACTCGTGCACGAGTACGTAGTTCATTCCTATCATTATTCACATGAATTTTCATTTTGTTGCACTGTCGACCTATTTGTGTTGCAGAAAAAGACCAACACCCCGGAAGCTCAGCAGAAATGTATTACTCGTCTGCTGAT</genome_strand>
        <mrna_strand>TTTCTTCTTGCAAATTTCAGTGATTTCCAATTGACTTCTCTTGGAGGTTTCATTGTTCATGAGAGTGCCTTCTTCTTGTCTGGAATCCCATTTATCCTTTTTGAAAGGGCAGGGTGGTTTGGCAAGTACAAAATTCAG.............................................................................................................................................................AAAAAGACCAACACCCCGGAAGCTCAGCAGAAATGTATTACTCGTCTGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279247" ref_strand="+" ref_description="SGN-E279247 [cLEL-4-A10](-)">
      <seq>gtaatacatttctgctgagcttccggggtgttggtctttttctgcaacacaaataggtcgacagtgcaacaaaatgaaaattcatgtgaataatgataggaatgaactaccgtactcgtgcacgagtactagtactagtcttgagtcgaatatcgttgatgtttgggatcattttgaacaagaaacatcattccattacctgaattttgtacttgccaaaccaccctgccttttcgaaaaggatgaaagggattccagacaagaagaaagcgctctcatgaacaatgaaacctccaagggaagtcaattggaaatcactaccatttgcaagaagaaacgcccaagcagattcgatcatggaagctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51326" stop="52262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51626" g_stop="51962" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E279247" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51626" e_stop="51962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATACATTTCTGCTGAGCTTCCGGGGTGTTGGTCTTTTTCTGCAACACAAATAGGTCGACAGTGCAACAAAATGAAAATTCATGTGAATAATGATAGGAATGAACTA-CGTACTCGTGCACGAGTACTAGTACTAGTCTTGAGTCGAATATCGTTGATGTTTGGGATCATTTTGAACAAGAAACATCATTCCATTACCTGAATTTTGTACTTGCCAAACCACCCTGCCTTTTCGAAAAGGATGAAAGGGATTCCAGACAAGAAGAAAGCGCTCTCATGAACAATGAAACCTCCAAGAGAAGTCAATTGGAAATCACTAAAATTTGCAAGAAGAAAC</genome_strand>
        <mrna_strand>GTAATACATTTCTGCTGAGCTTCCGGGGTGTTGGTCTTTTTCTGCAACACAAATAGGTCGACAGTGCAACAAAATGAAAATTCATGTGAATAATGATAGGAATGAACTACCGTACTCGTGCACGAGTACTAGTACTAGTCTTGAGTCGAATATCGTTGATGTTTGGGATCATTTTGAACAAGAAACATCATTCCATTACCTGAATTTTGTACTTGCCAAACCACCCTGCCTTTTCGAAAAGGATGAAAGGGATTCCAGACAAGAAGAAAGCGCTCTCATGAACAATGAAACCTCCAAGGGAAGTCAATTGGAAATCACTACCATTTGCAAGAAGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365266" ref_strand="+" ref_description="SGN-E365266 [cLPT-16-I7]">
      <seq>ttcgccttctctgaagttcaaatttcaaattccaaaacctagaaattgggcatggatgaacaagtacagctcaattcgatgtgccgggaaagtcaatcgatggtcccttgatggcatgaatgcccttgtcactggtggtactagaggcattgggcatgcaatagtggaggaattgtgtggactgggagccactgtgcatacgtgtgcccggaatgaagatgagcttggaacatgtttgaggagctggaaagatgagggctttacagtttctggttccttatgtgatgtgtcttctcaagttgatcgccaaaacttaatggaggttgtttcgtctacattcaatgggaagctcgacattcttataaacaacgcggggaccaatattcgcaaagctatggtggattttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65561" stop="62241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65261" g_stop="65109" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65108" i_stop="63543" i_length="1566">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63542" g_stop="63335" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="361" r_length="208" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63334" i_stop="62589" i_length="746">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.882" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62588" g_stop="62541" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="409" r_length="48" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E365266" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65261" e_stop="65109"/>
          <exon e_start="63542" e_stop="63335"/>
          <exon e_start="62588" e_stop="62541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCCTTCTGTGAAGTTCAAATTTCAAATTCCAAAACCTAGAAATTGGTCATGGATGAACAAGTACAGCTCAATCCGATGTGCCGGAAAAGTCAATCGATGGTCCCTTGATGGCATGAATGCCCTTGTCACTGGTGGTACTAGAGGCATTGGGTCCGTTTTCACTTATCCCTTTTCATTTACTTGTGCTTTTTTTTAGGATACTATATCTTTATAGCCATGTGATATAAAGAAATAACGATTCATATAGCCGATTCAAAATTGTTTGGGATTGAGGTGTAGATATTGTTATTATTGTTGTTGTATTTCTTAATATCCATTTGATATGAGCTTAAATGAAGAAATGGAGATTTAATACAGCTGGATCCAAATTGTTTGGGACTATCTTTATATCCATGGTATTTGAGCTTAAATGAAGATATGAGGATTCATATAGTCAATTTCAACTAGTTGTTGTCATTATATATCTTTATATGCATGATATTTGAGCTTAAATAAAGAAATGAGGATGCACATAGCTGATTCCAAATTGTTTGGGACTGAGGTGTAGTTGTCGTTATTATTGATGTGGTATATCTTCATATCCACGATATTTGAGCTTAAATGAAGATATGAGGATTCATATAGGCAATTTCAACTTGTTTGAAATTGAGGATTAGTGGTTGTAATTGTCATTGTATATCTTTATATCCATGGGATTTGAGCTTAAATAAAGAAATGAGGATTCACTTAGCTGATTCGAAAACTTTTAGGACTTAGGTGTAGTTTTTGTTATTGTCATTGTATATCCACCGGATATGAATTTAAATGAAGAAATGTGGATTCATATAGCCAATTTCAATTTGTTTAAGATTGAGATGTAGTTGTTTTTATTGTCGTTGTATATCTTGATATTCATGGGATATGATATTAAATGAAGAAATGAGGATTCAGTATAGCTGATAACAACTTGTTTGGGACTGAGATGTAGTTGTTGTCATTGTATATCTTTATATCCATGGGGCCTAAATGAAAAAATGGAGATTCATATAGTGGCTATTCCAACTTGTTTGAGACTGAGGCATAATTGTTGTTATTATCCTTGTATATAATCTTATATCCATTCACATATTAATTGAGTTTTTACATAATTACTGTAGAATGTTGCTTGCTTTGTTTTGAGCCTTATAATTTCATTTACTATGGGTAGTTATACCATTACTTTAATGTACAACAACAACATAAACAGTGTTATCTCAAAAAGTGGGTTTGAAGTGGGTAGGTGTACATAGACCTTACCGTTACCTAGTAATTTAAATACATAAATGTGACTTGTAATATCCTTTTAAACTCATTTTTTTTCAGTTATGACTTCTATTGTAGAAGATGTGACAGAGTAGTTTTTTTGGAATGATCTTGTAAGTAGTATTCACATTTCAGATTGAGGATACATGTTCGATTCTATTGTAAATTTTTTGAGGTGGAGTGGCTTTTGTGTAGTTTCTATAATATACATTTTATTTCAAGACAACCAAGGATTTCATGTACATTTCACATGATGAAGTTATATGCTTTGATCTTGTACTCCGAATCATCATTTGTTTTGAGACAGAAGTAATAACCAATATAGCCACAAGCCCAGTGCTTTTTTTTTTTTTTTAATTTTTAAAATCTAGTTTTTTGAAAATCTGAGTATAACTACGCATTTGTATTTGATAATGTGAATTGTTGTATAATTAGGCATGCGATAGTGGAGGAATTGTGTGGACTGGGAGCCACCGTGCATACGTGTGCCCGTAATGAAGATGAGCTTGAAATTTGTTTGAGGAGCTGGAAAGATGAGGGCTTTACAGTTTCTGGTTCCTTATGTGATGTGTCTTCTCAAGTTGATCGCCAAAAGTTAATGGAGGTTGTTTCGTCTACATTCAATGGGAAGCTCGACATTCTTGTAGGTATCTTTCTTTTTGATTGTTTATTCTCGTAGGTATCTTATGAGCTTAAGCACTTCTTAAAAGCTTTATATTTCAATGATATCTCTGTGGAGGACTTGGAGGCTAAGGAAAAGTTTTTCTTTTAAAATTATGACTGTCTTGAGCCTAATGGATATCATATAATCGACCTCAACCAGTTGGAACAAATAGATGATTTATGGAAAGTTTTTTTATCTTCCACAAAATGATTTTGTCTCATAGATGTTTCTAGAAAGCTTACAGATAACTATCCTTTACCACCAAGAAATCCTAGAGGCCCAATGGTGTGCGGTTCAAATTTCTTTGGATAATTATTCCAGATTAGCACCAGTGTATGTATGACTGTTGCCGGTGCATATAGAACTCATATATCAACATTAGATTGATAATTGGGTTAATTTGCAACAGATGCAGCTGAATTGTTTTTCAGTGTTGAACCTAGAAATAATTTGGCAAGCTGGCATTTCTCCAGCAGCCTATAAGAAAAAACTAATTGAATAGGAGGTTTTGTGGTATTGGGATCATTGTTGGATAATACATTGCATCATATATCTCTTTTCTCCTCAAGTTATACATGATGTCGAATTAACTAATCATTCATAATGTTGGACCTGGCACGTCAGTGTTAAAATAAATATCTTTGACGTATGATGCATCTAGCTTCATTGGATGGATTGCATGCACTAATAGATGAACTAATTGGCTTTCTTTCATTGCTCAGTAGATAAACAACGTGGGGACCAATATTCGCAAAGCTATGGTGGATTTTACT</genome_strand>
        <mrna_strand>TTCGCCTTCTCTGAAGTTCAAATTTCAAATTCCAAAACCTAGAAATTGGGCATGGATGAACAAGTACAGCTCAATTCGATGTGCCGGGAAAGTCAATCGATGGTCCCTTGATGGCATGAATGCCCTTGTCACTGGTGGTACTAGAGGCATTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCAATAGTGGAGGAATTGTGTGGACTGGGAGCCACTGTGCATACGTGTGCCCGGAATGAAGATGAGCTTGGAACATGTTTGAGGAGCTGGAAAGATGAGGGCTTTACAGTTTCTGGTTCCTTATGTGATGTGTCTTCTCAAGTTGATCGCCAAAACTTAATGGAGGTTGTTTCGTCTACATTCAATGGGAAGCTCGACATTCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAACAACGCGGGGACCAATATTCGCAAAGCTATGGTGGATTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233534" ref_strand="+" ref_description="SGN-E233534 [cLED-9-I4]">
      <seq>aaggagggatttcgaaagtgtacaaatgaacatactctttacataaaaagagaatgtgtaggggtcttaatggtgtgtttatatgtggatgacttaatttataccggaagtaatatgtctatgattaaaaactttaagaagtccatgatggttgagtttgacacgtcagatttgaggcatggtgcattatttccttggtttagaagtgaatcaatccgctgatggtatttttgtttctcaaaagaaatatgtgcaagatattctggacagattccagatgaaaaataacaacactgtgagcacaccaatggagaagggtccgaagctcgtcaaagaacctgaagggagaaaagtggacaacatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68219" stop="67253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67919" g_stop="67553" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E233534" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67919" e_stop="67553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAGGGATTTCGAAAGTGTACAAATGAACATACTCTTTACATAAAAAGAGAATGTGTAGGGGTCTTAATGGTGTGTTTATATGTGGATGACTTAATTTATACCGGAAGTAATATGTCTATGATTAAAAACTTTAAGAAGTCCATGATGGTTGAGTTTGACACGTCAGATTTGAGGCATGGTGCATTATTTCCTTGGTTTAGAAGTGAATCAATCCGCTGATGGTATTTTTGTTTCTCAAAAGAAATATGTGCAAGATATTCTGGACAGATTCCAGATGAAAAATAACAACACTGTGAGCACACCAATGGAGAAGGGTCCGAAGCTCGTCAAAGAACCTGAAGGGAGAAAAGTGGACAACATTTTA</genome_strand>
        <mrna_strand>AAGGAGGGATTTCGAAAGTGTACAAATGAACATACTCTTTACATAAAAAGAGAATGTGTAGGGGTCTTAATGGTGTGTTTATATGTGGATGACTTAATTTATACCGGAAGTAATATGTCTATGATTAAAAACTTTAAGAAGTCCATGATGGTTGAGTTTGACACGTCAGATTTGAGGCATGGTGCATTATTTCCTTGGTTTAGAAGTGAATCAATCCGCTGATGGTATTTTTGTTTCTCAAAAGAAATATGTGCAAGATATTCTGGACAGATTCCAGATGAAAAATAACAACACTGTGAGCACACCAATGGAGAAGGGTCCGAAGCTCGTCAAAGAACCTGAAGGGAGAAAAGTGGACAACATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82401" stop="81566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82101" g_stop="81866" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82101" e_stop="81866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGCAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAACATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTT-TCTTCTTTGTTATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTATCTTC-TTGTTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242359" ref_strand="+" ref_description="SGN-E242359 [cLEE-3-K21]">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82852" stop="81657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82551" g_stop="82466" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82465" i_stop="82389" i_length="77">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82388" g_stop="81957" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="515" r_length="429" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E242359" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82551" e_stop="82466"/>
          <exon e_start="82388" e_stop="81957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAATGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTATCACGTTCCGACACCAGGATAATATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCAACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGGTAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAATATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATTTTGAAAGATGTTAATATGTTCAATCTAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGCAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAACATATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCAC.............................................................................GTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATAT--GGATCGG-GTGCCACGTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377359" ref_strand="+" ref_description="SGN-E377359 [TUS-21-I24]">
      <seq>aggagtcgaagtgtatcttcaagcacttcaatattcagtaggtatttgagaagaagcagaagaaattgggtacctgaagaacgtaatggagtaacaagatggtaattacttagtcggaaaacgccaattttcaattattatttttatagagcagtcgactagaagcagaagacgataacccccgatgccaagtgtaaggcaatgtgtgattggtagagcagtcgactagaagaagaagacaataatgtcgttctttaaattattacctgttgagtgggaagggagcactaaaaaaagagaaagttcggttctagagcagtcgactagaagtagaagattgatggctaagagagcggcctatatggcatagagaaaagatgccattttgttgggaatatgtaaatagagaaggctttgatatgaaattcaatacatttttagtgtcattttgttgaatttgtagcagtaattataagtaatagaaagaccattgtttttttttataaaaaaaaaaaaaaaaaaaaaaaagagggaaaaaaatacctcgagggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93076" stop="91968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92776" g_stop="92272" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="508" polyA_stop="530"/>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E377359" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92776" e_stop="92272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGAGCAGTCGACTAGAAGAAGAAGACAATAATGTCGTTCTTTAAATTATTACCTGTTGAGTGGGAAGGGAGCACTAAAAAAAGAGAAAGTTCGGTTCTAGAGCAGTCGACTAGAAGTAGAAGATTGATGGCTAAGAGAGCGGCCTATATGGCATAGAGAAAAGATGCCATTTTGTTGGGAATATGTAAATAGAGAAGGCTTTGATATGAAATTCAATACATTTTTAGTGTCATTTTGTTGAATTTGTAGCAGTAATTATAAGTAATAGAAAGACCATTGTTTTTTTTTATA</genome_strand>
        <mrna_strand>AGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGAGCAGTCGACTAGAAGAAGAAGACAATAATGTCGTTCTTTAAATTATTACCTGTTGAGTGGGAAGGGAGCACTAAAAAAAGAGAAAGTTCGGTTCTAGAGCAGTCGACTAGAAGTAGAAGATTGATGGCTAAGAGAGCGGCCTATATGGCATAGAGAAAAGATGCCATTTTGTTGGGAATATGTAAATAGAGAAGGCTTTGATATGAAATTCAATACATTTTTAGTGTCATTTTGTTGAATTTGTAGCAGTAATTATAAGTAATAGAAAGACCATTGTTTTTTTTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236510" ref_strand="+" ref_description="SGN-E236510 [cLED-13-C21]">
      <seq>aggagtcgaagtgtatcttcaagcacttcaatattcagtaggtatttgagaagaagcagaagaaattgggtacctgaagaacgtaatggagtaacaagatggtaattacttagtcggaaaacgccaattttcaattattatttttatagagcagtcgactagaagcagaagacgataacccccgatgccaagtgtaaggcaatgtgtgattggtagagcagtcgactagaagaagaagacaataatgtcgttctttaaattattacctgttgagtgggaagggagcactaaaaaaagagaaagttcggttctagaagcagcgactagaagtagaagattgatggctaagagagcggcctatatggcatagagaaaagatgccattttgttgggaatatgtaaatagagaaggctttgatatgaaattcaatacatttttagtgtcattttgttgaatttgtagcagtaattataagtaatagaaagaccattgttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93076" stop="91975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92776" g_stop="92275" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E236510" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92776" e_stop="92275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGAGCAGTCGACTAGAAGAAGAAGACAATAATGTCGTTCTTTAAATTATTACCTGTTGAGTGGGAAGGGAGCACTAAAAAAAGAGAAAGTTCGGTTCTAG-AGCAGTCGACTAGAAGTAGAAGATTGATGGCTAAGAGAGCGGCCTATATGGCATAGAGAAAAGATGCCATTTTGTTGGGAATATGTAAATAGAGAAGGCTTTGATATGAAATTCAATACATTTTTAGTGTCATTTTGTTGAATTTGTAGCAGTAATTATAAGTAATAGAAAGACCATTGTTTTTTTTT</genome_strand>
        <mrna_strand>AGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGAGCAGTCGACTAGAAGAAGAAGACAATAATGTCGTTCTTTAAATTATTACCTGTTGAGTGGGAAGGGAGCACTAAAAAAAGAGAAAGTTCGGTTCTAGAAGCAG-CGACTAGAAGTAGAAGATTGATGGCTAAGAGAGCGGCCTATATGGCATAGAGAAAAGATGCCATTTTGTTGGGAATATGTAAATAGAGAAGGCTTTGATATGAAATTCAATACATTTTTAGTGTCATTTTGTTGAATTTGTAGCAGTAATTATAAGTAATAGAAAGACCATTGTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379209" ref_strand="+" ref_description="SGN-E379209 [TUS-1-N16](-)">
      <seq>agatcaagaagaagcaacacaggtcgaaatggcaacggaataagccgaattttcaacaacttcacatcatttttccggcgattaacaccatcttctcaacatcgatctctatccatacattccagtagttcagaatcatccggttctggttctggatctgctgtattcaggagtcgaagtgtatcttcaagcacttcaatattcagtaggtatttgagaagaagcagaagaaattgggtacctgaagaacgtaatggagtaacaagatggtaattacttagtcggaaaacgccaattttcaattattatttttatagagcagtcgactagaagcagaagacgataacccccgatgccaagtgtaaggcaatgtgtgattggtagagcagtcgactagaagaagaagacaataatgtcgttctttaaattattacctgttgagtgggaagggagcactaaaaaaagagaaagttcggttctagagcagtcgactagaagtagaagattgatggctaagagagcggcctatatggcatagagaaaagatgccattttgttgggaatatgtaaatagagaaggctttgatatgaaattcaatacatttttagtgtcattttgttgaatgagtagcagtaattataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93244" stop="92002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92944" g_stop="92302" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E379209" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92944" e_stop="92302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGAGCAGTCGACTAGAAGAAGAAGACAATAATGTCGTTCTTTAAATTATTACCTGTTGAGTGGGAAGGGAGCACTAAAAAAAGAGAAAGTTCGGTTCTAGAGCAGTCGACTAGAAGTAGAAGATTGATGGCTAAGAGAGCGGCCTATATGGCATAGAGAAAAGATGCCATTTTGTTGGGAATATGTAAATAGAGAAGGCTTTGATATGAAATTCAATACATTTTTAGTGTCATTTTGTTGAATTTGTAGCAGTAATTATAA</genome_strand>
        <mrna_strand>AGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGAGCAGTCGACTAGAAGAAGAAGACAATAATGTCGTTCTTTAAATTATTACCTGTTGAGTGGGAAGGGAGCACTAAAAAAAGAGAAAGTTCGGTTCTAGAGCAGTCGACTAGAAGTAGAAGATTGATGGCTAAGAGAGCGGCCTATATGGCATAGAGAAAAGATGCCATTTTGTTGGGAATATGTAAATAGAGAAGGCTTTGATATGAAATTCAATACATTTTTAGTGTCATTTTGTTGAATGAGTAGCAGTAATTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389452" ref_strand="+" ref_description="SGN-E389452 [TUS-4-A3](-)">
      <seq>aagaagaagacaataatgtcgttttttaaattattacctgttgagtgggaagggagcactaaaaaaagagaaagttcggttctagagcagtcgactagaagtagaagattgatggctaagagagcggcctatatggcatagagaaaattttatcattttgttggcgataaataaatagagaaggctttgatatgaaattcaatacatttttagtgtcattttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92847" stop="92025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92547" g_stop="92325" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E389452" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>223</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92547" e_stop="92325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAGACAATAATGTCGTTCTTTAAATTATTACCTGTTGAGTGGGAAGGGAGCACTAAAAAAAGAGAAAGTTCGGTTCTAGAGCAGTCGACTAGAAGTAGAAGATTGATGGCTAAGAGAGCGGCCTATATGGCATAGAGAAAA-GATGCCATTTTGTTGGGAATATGTAAATAGAGAAGGCTTTGATATGAAATTCAATACATTTTTAGTGTCATTTTGT</genome_strand>
        <mrna_strand>AAGAAGAAGACAATAATGTCGTTTTTTAAATTATTACCTGTTGAGTGGGAAGGGAGCACTAAAAAAAGAGAAAGTTCGGTTCTAGAGCAGTCGACTAGAAGTAGAAGATTGATGGCTAAGAGAGCGGCCTATATGGCATAGAGAAAATTTTATCATTTTGTTGGCGATAAATAAATAGAGAAGGCTTTGATATGAAATTCAATACATTTTTAGTGTCATTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303411" ref_strand="+" ref_description="SGN-E303411 [cLEX-2-D18]">
      <seq>aagacgaggcaatgggattgacaatatggagacttccgggaggtgggttcgccgtaggaagattttccggtggaagaagaggagctgagagagagcttccagtagtgtatacagaaatggacggtggatttaacaatggggtacctagaagaatagcttggagatcaagaagaagcaacacaggtcgaaatggcaacggaataagccgaattttcaacaacttcacatcatttttccggcgattaacaccatcttctcaacatcgatctctatccatacattccagtagttcagaatcatccggttctggttctggatctgctgtattcaggagtcgaagtgtatcttcaagcacttcaatattcagtaggtatttgagaagaagcagaagaaattgggtacctgaagaacgtaatggagtaacaagatggtaattacttagtcggaaaacgccaattttcaattattatttttatagagcagtcgactagaagcagaagacgataacccccgatgccaagtgtaaggcaatgtgtgattggtagagcagtcgactagaagaagaagacaataatgtcgttctttaaattattacctgttgagtgggaagggagcactaaaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93405" stop="92179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93105" g_stop="92479" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E303411" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93105" e_stop="92479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGAGCAGTCGACTAGAAGAAGAAGACAATAATGTCGTTCTTTAAATTATTACCTGTTGAGTGGGAAGGGAGCACTAAAAAAAGA</genome_strand>
        <mrna_strand>AAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGAGCAGTCGACTAGAAGAAGAAGACAATAATGTCGTTCTTTAAATTATTACCTGTTGAGTGGGAAGGGAGCACTAAAAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230973" ref_strand="+" ref_description="SGN-E230973 [cLED-5-K7]">
      <seq>agattttccggtggaagaagaggagctgagagagagcttccagtagtgtatacagaaatggacggtggatttaacaatggggtacctagaagaatagcttggagatcaagaagaagcaacacaggtcgaaatggcaacggaataagccgaattttcaacaacttcacatcatttttccggcgattaacaccatcttctcaacatcgatctctatccatacattccagtagttcagaatcatccggttctggttctggatctgctgtattcaggagtcgaagtgtatcttcaagcacttcaatattcagtaggtatttgagaagaagcagaagaaattgggtacctgaagaacgtaatggagtaacaagatggtaattacttagtcggaaaacgccaattttcaattattatttttatagagcagtcgactagaagcagaagacgataacccccgatgccaagtgtaaggcaatgtgtgattggtagagcagtcgactagaagaagaagacaataatgtcgttctttaaattattacctgttgagtgggaagggagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93346" stop="92189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93046" g_stop="92489" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E230973" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93046" e_stop="92489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGAGCAGTCGACTAGAAGAAGAAGACAATAATGTCGTTCTTTAAATTATTACCTGTTGAGTGGGAAGGGAGCAC</genome_strand>
        <mrna_strand>AGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGAGCAGTCGACTAGAAGAAGAAGACAATAATGTCGTTCTTTAAATTATTACCTGTTGAGTGGGAAGGGAGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235778" ref_strand="+" ref_description="SGN-E235778 [cLED-15-O19]">
      <seq>aagattttccggtggaagaagaggagctgagagagagcttccagtagtgtatacagaaatggacggtggatttaacaatggggtacctagaagaatagcttggagatcaagaagaagcaacacaggtcgaaatggcaacggaataagccgaattttcaacaacttcacatcatttttccggcgattaacaccatcttctcaacatcgatctctatccatacattccagtagttcagaatcatccggttctggttctggatctgctgtattcaggagtcgaagtgtatcttcaagcacttcaatattcagtaggtatttgagaagaagcagaagaaattgggtacctgaagaacgtaatggagtaacaagatggtaattacttagtcggaaaacgccaattttcaattattatttttatagagcagtcgactagaagcagaagacgataacccccgatgccaagtgtaaggcaatgtgtgattggtagagcagtcgactagaagaagaagacaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93347" stop="92233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93047" g_stop="92533" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E235778" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93047" e_stop="92533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGAGCAGTCGACTAGAAGAAGAAGACAATA</genome_strand>
        <mrna_strand>AAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGAGCAGTCGACTAGAAGAAGAAGACAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301410" ref_strand="+" ref_description="SGN-E301410 [cLEX-8-C8]">
      <seq>agaagaatagcttggagatcaagaagaagcaacacaggtcgaaatggcaacggaataagccgaattttcaacaacttcacatcatttttccggcgattaacaccatcttctcaacatcgatctctatccatacattccagtagttcagaatcatccggttctggttctggatctgctgtattcaggagtcgaagtgtatcttcaagcacttcaatattcagtaggtatttgagaagaagcagaagaaattgggtacctgaagaacgtaatggagtaacaagatggtaattacttagtcggaaaacgccaattttcaattattatttttatagagcagtcgactagaagcagaagacgataacccccgatgccaagtgtaaggcaatgtgtgattggtagagcagtcgactagaagaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93259" stop="92239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92959" g_stop="92539" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E301410" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92959" e_stop="92539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGAGCAGTCGACTAGAAGAAGAAG</genome_strand>
        <mrna_strand>AGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGAGCAGTCGACTAGAAGAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237593" ref_strand="+" ref_description="SGN-E237593 [cLED-19-P14]">
      <seq>cgacaacatttctagacccagaaacgaagacgaggcaatgggattgacaatatggagacttccgggaggtgggttcgccgtaggaagattttccggtggaagaagaggagctgagagagagcttccagtagtgtatacagaaatggacggtggatttaacaatggggtacctagaagaatagcttggagatcaagaagaagcaacacaggtcgaaatggcaacggaataagccgaattttcaacaacttcacatcatttttccggcgattaacaccatcttctcaacatcgatctctatccatacattccagtagttcagaatcatccggttctggttctggatctgctgtattcaggagtcgaagtgtatcttcaagcacttcaatattcagtaggtatttgagaagaagcagaagaaattgggtacctgaagaacgtaatggagtaacaagatggtaattacttagtcggaaaacgccaattttcaattattatttttattaggcagtcgactagaaacagaagacgataacccccgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93431" stop="92291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93131" g_stop="92591" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E237593" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93131" e_stop="92591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGAT</genome_strand>
        <mrna_strand>CGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATTAGGCAGTCGACTAGAAACAGAAGACGATAACCCCCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340963" ref_strand="+" ref_description="SGN-E340963 [cTOF-5-B11]">
      <seq>ggggtgatagatctccgtttaatccggttattgttcttcgtagtccatctgaagcacctggggaggatgaagctgctgcagctgcagaggagcggagttatgagctttattatgatgatggtgaaggttcaggtctcaggccgttgccgccgacgatgtcggagtttttgatgggatctgggtttgatcggttacttgatcagttagcacagatcgaggtgaacggttttggtcgcccggaaaatccaccggcgtcgaaatcagcgattgagtcgatgccgattattcaaatagcttcaaatcacgtaaattccgagacccattgcgctgtttgtaaagaagctttcgatttaggatctgaagctcgagaaatggacggtggatttaacaatggggtacctagaagaatagcttggagatcaagaagaagcaacacaggtcgaaatggcaacggaataagccgaattttcaacaacttcacatcatttttccggcgattaacaccatcttctcaacatcgatctctatccatacattccagtagttcagaatcatccggttctggttctggatctgctgtattcaggagtcgaagtgtatcttcaagcacttcaatattcagtaggtatttgagaagaagcagaagaaattgggtacctgaagaacgtaatggagtaacaagatggtaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93918" stop="92370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93618" g_stop="93241" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93240" i_stop="92984" i_length="257">
            <donor d_prob="0.547" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92983" g_stop="92670" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="691" r_length="314" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E340963" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93618" e_stop="93241"/>
          <exon e_start="92983" e_stop="92670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATT</genome_strand>
        <mrna_strand>GGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGGAC-.................................................................................................................................................................................................................................................................GGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346740" ref_strand="+" ref_description="SGN-E346740 [cTOF-28-F24]">
      <seq>cggttttggtcgcccggaaaatccaccggcgtcgaaatcagcgattgagtcgatgccgattattcaaatagcttcaaatcacgtaaattccgagacccattgcgctgtttgtaaagaagctttcgatttaggatctgaagctcgagaaatgccctgtaaacacatctaccattccgattgtatcctcccatggctatctcttcgaaattcgtgccccgtttgccgacacgaattaccaacggaatcaactgaaactacaaactccgacaacatttctagacccagaaacgaagacgaggcaatgggattgacaatatggagacttccgggagggtgggttcgccgtaggaagattttccggtggaagaagaggagctgagagagagcttccagtagtgtatacagaaatggacggtggatttaacaatggggtacctagaagaatangcttggagatcaagaagaagcaacacagggtcgaaatggcaacggaataagccgaattttcaacaacttcacatcatttttccggcgattaacaccatcttctaacnatcgatctctatccatacattccagtagttcagatcatcccgtttctggttctggatctgctgtattcaagagtcgnaagtgtatcttcaagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93695" stop="92451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93395" g_stop="92751" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E346740" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93395" e_stop="92751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGA-GGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATA-GCTTGGAGATCAAGAAGAAGCAACACA-GGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCAT-CCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCG-AAGTGTATCTTCAAGCAC</genome_strand>
        <mrna_strand>CGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATANGCTTGGAGATCAAGAAGAAGCAACACAGGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTAACNATCGATCTCTATCCATACATTCCAGTAGTTCAG-ATCATCCCGTTTCTGGTTCTGGATCTGCTGTATTCAAGAGTCGNAAGTGTATCTTCAAGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214348" ref_strand="+" ref_description="SGN-E214348 [cLEC-77-G17]">
      <seq>acggttttggtcgcccggaaaatccaccggcgtcgaaatcagcgattgagtcgatgccgattattcaaatagcttcaaatcacgtaaattccgagacccattgcgctgtttgtaaagaagctttcgatttaggatctgaagctcgagaaatgccctgtaaacacatctaccattccgattgtatcctcccatggctatctcttcgaaattcgtgccccgtttgccgacacgaattaccaacggaatcaactgaaactacaaactccgacaacatttctagacccagaaacgaagacgaggcaatgggattgacaatatggagacttccgggaggtgggttcgccgtaggaagattttccggtggaagaagaggagctgagagagagcttccagtagtgtatacagaaatggacggtggatttaacaatggggtacctagaagaatagcttggagatcaagaagaagcaacacaggtcgaaatggcaacggaataagccgaattttcaacaacttcacatcatttttccggcgattaacaccatcttctcaacatcgatctctatccatacattccagtagttcagaatcatccggttctggttctggatctgctgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93696" stop="92479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93396" g_stop="92779" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E214348" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93396" e_stop="92779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTAT</genome_strand>
        <mrna_strand>ACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707926" ref_strand="+" ref_description="SGN-E707926 [FA34BD10]">
      <seq>cgttctcgacggagcaggcgtaatcggggtgatagatctccgtttaatccggttattgttcttcgtagtccatctgaagcacctggggaggatgaagctgctgcagctgcagaggagcggagttatgagctttattatgatgatggtgaaggttcaggtctcaggccgttgccgccgacgatgtcggagtttttgatgggatctgggtttgatcggttacttgatcagttagcacagatcgaggtgaacggttttggtcgcccggaaaatccaccggcgtcgaaatcagcgattgagtcgatgccgattattcaaatagcttcaaatcacgtaaattccgagacccattgcgctgtttgtaaagaagctttcgatttaggatctgaagctcgagaaatgccctgtaaacacatctaccattccgattgtatcctcccatggctatctcttcgaaattcgtgccccgtttgccgacacgaattaccaacggaatcaactgaaactacaaactccgacaacatttctagacccagaaacgaagacgaggcaatgggattgacaatatggagacttccgggaggtgggttcgccgtaggaagattttccggtggaagaagaggagctgagagagagcttccagtagtgtatacagaaatggacggtggatttaacaatggggtacctagaagaatagcttggagatcaagaagaagcaacacaggtcgaaatggcaacggaataagccgaattttcaacaacttcacatcatttttccggcgattaacaccatcttctcaacatcgatctctatccatacattccagtagttcagaatcatccggttctggttctggatctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93942" stop="92482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93643" g_stop="92782" g_length="862"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="862" r_length="862" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E707926" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93643" e_stop="92782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTG</genome_strand>
        <mrna_strand>CGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235290" ref_strand="+" ref_description="SGN-E235290 [cLED-11-O15]">
      <seq>tgggatctgggtttgatcggttacttgatcagttagcacagatcgaggtgaacggttttggtcgcccggaaaatccaccggcgtcgaaatcagcgattgagtccatgccgattattcaaatagcttcaaatcacgtaaattccgagacccattgcgctgattgtaaagaagctttcgatttaggatctgaagctcgagaaatgccctgtaaacacatataccattccgattgtatcctcccatggctatctcttcgaaattcgtgccccgtttgccgacacgaattaccatctgactcaactgaaactacaaactccgacaacatttctagacccagaaacgtagacgaggcaatgggattgacaatatggagacttccgggaggtggattcgccgtaggaagattttccggtggaagaagaggagctgagagagagcttacagtagtgtatacagaaatggacggtggatttaacaatggggtacctagaagaatagcttggagatcaagaagaagctacacaggtcgaaatggcaacggaataagccgaattttcaacaacttcacatcatttttccggcgattaacaccatcttgtcaacatcgatctctatccatacattccagtagttcagaatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93747" stop="92505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93447" g_stop="92805" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E235290" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93447" e_stop="92805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATC</genome_strand>
        <mrna_strand>TGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCCATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGATTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATATACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCATCTGACTCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGTAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGATTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTACAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCTACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTGTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389716" ref_strand="+" ref_description="SGN-E389716 [TUS-4-A3]">
      <seq>cttcgtagtccatctgaagcacctggggaggatgaagctgctgcagctgcagaggagcggagttatgagctttattatgatgatggtgaaggttcaggtctcaggccgttgccgccgacgatgtcggagtttttgatgggatctgggtttgatcggttacttgatcagttagcacagatcgaggtgaacggttttggtcgcccggaaaatccaccggcgtcgaaatcagcgattgagtcgatgccgattattcaaatagcttcaaatcacgtaaattccgagacccattgcgctgtttgtaaagaagctttcgatttaggatctgaagctcgagaaatgccctgtaaacacatctaccattccgattgtatcctcccatggctatctcttcgaaattcgtgccccgtttgccgacacgaattaccaacggaatcaactgaaactacaaactccgacaacatttctagacccagaaacgaagacgaggcaatgggattgacaatatggagacttccgggaggtgggttcgccgtaggaagattttccggtggaagaagaggagctgagagagagcttccagtagtgtatacagaaatggacggtggnatttacaatggggtacctagaagaatagcttgggagatcagaagaaagcacacaggtcgaaatgggcacggaaatagccgaattttcacaacttcacatcatttttccggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93883" stop="92565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93583" g_stop="92865" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E389716" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93583" e_stop="92865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTG-GAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCG</genome_strand>
        <mrna_strand>CTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGNATTTACAATGGGGTACCTAGAAGAATAGCTTGGGAGATC-AGAAGAAAGCACACAGGTCGAAATGGGCACGGAAATAGCCGAATTTTC-ACAACTTCACATCATTTTTCCGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550068" ref_strand="+" ref_description="SGN-E550068 [TUS-5-A3]">
      <seq>cttcgtagtccatctgaagcacctggggaggatgaagctgctgcagctgcagaggagcggagttatgagctttattatgatgatggtgaaggttcaggtctcaggccgttgccgccgacgatgtcggagtttttgatgggatctgggtttgatcggttacttgatcagttagcacagatcgaggtgaacggttttggtcgcccggaaaatccaccggcgtcgaaatcagcgattgagtcgatgccgattattcaaatagcttcaaatcacgtaaattccgagacccattgcgctgtttgtaaagaagctttcgatttaggatctgaagctcgagaaatgccctgtaaacacatctaccattccgattgtatcctcccatggctatctcttcgaaattcgtgccccgtttgccgacacgaattaccaacggaatcaactgaaactacaaactccgacaacatttctagacccagaaacgaagacgaggcaatgggattgacaatatggagacttccgggaggtgggttcgccgtacgaagattttccggtggaagaagaggagctgaagaaaagcttccagtagtgtatacagaaatggacggtggatttaacaatggggtacctagaagaatagcttggagatcaagaagaagcaacacaggtcgaaatggcaacggaataagccgaatttcaacaacttcacatcattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93883" stop="92571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93583" g_stop="92871" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E550068" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93583" e_stop="92871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTT</genome_strand>
        <mrna_strand>CTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTACGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAAGAAAAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAA-TTTCAACAACTTCACATCATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204890" ref_strand="+" ref_description="SGN-E204890 [cLEC-14-F24]">
      <seq>agctttcgatttaggatctgaagctcgagaaatgccctgtaaacacatctaccattccgattgtatcctcccatggctatctcttcgaaattcgtgccccgtttgccgacacgaattaccaacggaatcaactgaaactacaaactccgacaacatttctagacccagaaacgaagacgaggcaatgggattgacaatatggagacttccgggaggtgggttcgccgtaggaagattttccggtggaagaagaggagctgagagagagcttccagtagtgtatacagaaatggacggtggatttaacaatggggtacctagaagaatagcttggagatcaagaagaagcaacacaggtcgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93578" stop="92615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93278" g_stop="92915" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E204890" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93278" e_stop="92915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAAT</genome_strand>
        <mrna_strand>AGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367405" ref_strand="+" ref_description="SGN-E367405 [cLPT-7-F21]">
      <seq>acagatcgaggtgatcggttttggtcggccggaaaatccaccggcgtcgaaatcagcgattgagtcgatgccgattattcaaatagcttcaaatcacgtaaattccgagacccattgcgctgtttgtaaagaagctttcgatttaggatctgaagctcgagaaatgccctgtaacacatctaccattccgattgtatcctcccatggctatctcttcgaaattcggccccgtttgccgacacgaattaccatcggaatcaactgaaactacaaactccgacaacatttctagacccagaaacgaagacgaagcaatgggattgacaatatggagacttccgggaggtgggttcgccgtacgaagattttccggtggaagaagaggagctgagagagaacttccagtagtgtatacagaaatggacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93710" stop="92683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93410" g_stop="92983" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E367405" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93410" e_stop="92983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACG</genome_strand>
        <mrna_strand>ACAGATCGAGGTGATCGGTTTTGGTCGGCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGT-AACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCG-GCCCCGTTTGCCGACACGAATTACCATCGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAAGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTACGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAACTTCCAGTAGTGTATACAGAAATGGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258359" ref_strand="+" ref_description="SGN-E258359 [cLEG-49-L24]">
      <seq>ttgtcctcactgtgatagtggatttatagaagttgctgagggaaatattgggtcgccggaatctcgccggaggtttcccatgtggaacgaacggccagagtcagatcggagtgtgaacatgggttctcgacggagcaggcgtaatcggggtgatagatctccgtttaatccggttattgttcttcgtagtccatctgaagcacctggggaggatgaagctgctgcagctgcagaggagcggagttatgagctttattatgatgatggtgaaggttcaggtctcaggccgttgccgccgacgatgtcggagtttttgatgggatctgggtttgatcggttacttgatcagttagcacagatcgaggtgaacggttttggtcgcccggaaaatccaccggcgtcgaaatcagcgattgagtcgatgccgattattcaaatagcttcaaatcacgtaaattccgagacccattgcgctgtttgtaaagaagctttcgatttaggatctgaagctcgagaaatgccctgtaaacacatctaccattccgattgtatcctcccatggctatctcttcgaaattcgtgccccgtttgccgacacgaattaccaacggaatcaactgaaactacaaactccgacaacatttctagacccagaaacgaagacgaggcaatgggattgacaatatggagacttccggggagtgggttcgccgtaggaagattttccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94064" stop="92737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93764" g_stop="93037" g_length="728"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="728" r_length="728" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E258359" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93764" e_stop="93037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCG</genome_strand>
        <mrna_strand>TTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGGAGTGGGTTCGCCGTAGGAAGATTTTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206896" ref_strand="+" ref_description="SGN-E206896 [cLEC-33-J8]">
      <seq>ttaatccggttattgttcttcgtagtccatctgaagcacctggggaggatgaagctgctgcagctgcagaggagcggagttatgagctttattatgatgatggtgaaggttcaggtctcaggccgttgccgccgacgatgtcggagtttttgatgggatctgggtttgatcggttacttgatcagttagcacagatcgaggtgaacggttttggtcgcccggaaaatccaccggcgtcgaaatcagcgattgagtcgatgccgattattcaaatagcttcaaatcacgtaaattccgagacccattgcgctgtttgtaaagaagctttcgatttaggatctgaagctcgagaaatgccctgtaaacacatctaccattccgattgtatcctcccatggctatctcttcgaaattcgtgccccgtttgccgacacgaattaccaacggaatcaactgaaactacaaactccgacaacatttctagacccagaaacgaagacgaggcaatgggattgacaatatggagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93900" stop="92773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93600" g_stop="93073" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E206896" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93600" e_stop="93073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGAC</genome_strand>
        <mrna_strand>TTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205039" ref_strand="+" ref_description="SGN-E205039 [cLEC-16-N7]">
      <seq>gtaatctgtgtgatagatctccgtttaatccggttattgttctgcgtagtccatctgaagcaccgggggaggatgaagctgctgcagctgcagaggagcggagttatgagctttattatgatgatggtgaaggttcaggtctcaggccgttgccgccgacgatgtcggagtttttgatgggatctgggtttgatcggttacttgatcagttagcacagatcgaggtgaacggttttggtcgcccggaaaatccaccggcgtcgaaatcagcgattgagtcgatgccgattattcaaatagcttcaaatcacgtaaattccgagacccattgcgctgtttgtaaagaagctttcgatttaggatctgaagctcgagaaatgccctgtaaacacatctaccattccgattgtatcctcccatggctatctcttcgaaattcgtgccccgtttgccgacacgaattaccaacggaatcaactgaaactacaaactccgacaacatttctagacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93924" stop="92814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93624" g_stop="93114" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E205039" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93624" e_stop="93114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACC</genome_strand>
        <mrna_strand>GTAATCTGTGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTGCGTAGTCCATCTGAAGCACCGGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405143" ref_strand="+" ref_description="SGN-E405143 [PPC-16-P17]">
      <seq>agtctcgacggagcaggcgtaatcggggagatagatctccgtttaatccggttattgttcttcgtagtccatcggaagctcctggggaggatgaagctgctgcagctgcagaggagcggagttacgagctttattatgatgatggtgaaggttcaggtctcaggccgttgccgccgacgatgtcggagtttttgatgggatctgggtttgatcggttacttgatcagttagcacagatcgaggtgaacggttttggtcggccggaaaatccaccggcgtcgaaatcagcgattgaatcgatgccgattattcaaatagcttgtactcacgtaaattctgagaaccattgcgctgtttgtaaagaagctttcgatttaagatctgaagctcgagaaatgccctgtaaacacatctaccattccgattgtattcttccatggctatctcttcgaaattcgtgccccgtttgccgacacgaattaccggcggaatcaacggaaactacaaactccgacaacattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93940" stop="92820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93642" g_stop="93120" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E405143" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93642" e_stop="93120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTC</genome_strand>
        <mrna_strand>AGTCTCGACGGAGCAGGCGTAATCGGGGAGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCGGAAGCTCCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTACGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGGCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAATCGATGCCGATTATTCAAATAGCTTGTACTCACGTAAATTCTGAGAACCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAAGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATTCTTCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCGGCGGAATCAACGGAAACTACAAACTCCGACAACATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334125" ref_strand="+" ref_description="SGN-E334125 [cTOD-21-K9]">
      <seq>tttattgggttgagttttgactgatctccggcgactgcagatgtcttcgtactggtgttatcggtgtacaaggtttgttagaatttcagttggaaacgatgttgtttgtcctcactgtgatagtggatttatagaagttgctgagggaaatattgggtcgccggaatctcgccggaggtttcccatgtggaacgaacggccagagtcagatcggagtgtgaacatgggttctcgacggagcaggcgtaatcggggtgatagatctccgtttaatccggttattgttcttcgtagtccatctgaagcacctggggaggatgaagctgctgcagctgcagaggagcggagttatgagctttattatgatgatggtgaaggttcaggtctcaggccgttgccgccgacgatgtcggagtttttgatgggatctgggtttgatcggttacttgatcagttagcacagatcgaggtgaacggttttggtcgcccggaaaatccaccggcgtcgaaatcagcgattgagtcgatgccgattattcaaatagcttcaaatcacgtaaattccgagacccattgcgctgtttgtaaagaagctttcgatttaggatctgaagctcgagaaatgcccctgtaacacatctaccattccgattgtatccctccatggctatctcttcgaaattcgtgccccgtttgccgacacgaattacaacgggaatcactgaaactacaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94169" stop="92832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93869" g_stop="93132" g_length="738"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="737" r_length="737" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E334125" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93869" e_stop="93132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATG-CCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTC</genome_strand>
        <mrna_strand>TTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCCTGT-AACACATCTACCATTCCGATTGTATCCCTCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACAACGGGAATC-ACTGAAACTACAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336061" ref_strand="+" ref_description="SGN-E336061 [cTOE-12-K11]">
      <seq>gcgactgcagatgtcttcgtactggtgttatcggtgtacaaggtttgttagaatttcagttggaaacgatgttgtttgtcctcactgtgatagtggatttatagaagttgctgagggaaatattgggtcgccggaatctcgccggaggtttcccatgtggaacgaacggccagagtcagatcggagtgtgaacatgggttctcgacggagcaggcgtaatcggggtgatagatctccgtttaatccggttattgttcttcgtagtccatctgaagcacctggggaggatgaagctgctgcagctgcagaggagcggagttatgagctttattatgatgatggtgaaggttcacgtctcaggccgttgccgccgacgatgtcggagtttttgatgggatctgggtttgatcggttacttgatcagttagcacagatcgaggtgaacggttttggtcgcccggaaaatccaccggcgtcgaaatcagcgattgagtcgatgccgattattcaaatagcttcaaatcacgtaaattccgagacccattgcgctgtttgtaaagaagctttcgatttaggatctgaagctcgagaaatgccctgtaaacacatctaccattccgattgtatcctcccatggctatctcttcgaaattcgtgccccgtttgccgacacgaattaccaacgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94139" stop="92854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93839" g_stop="93154" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="686" r_length="686" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E336061" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93839" e_stop="93154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGG</genome_strand>
        <mrna_strand>GCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCACGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E435083" ref_strand="+" ref_description="SGN-E435083 [STM-60-P10]">
      <seq>ctcttttctcttacgagaccttttttttattctccggcgagcctaatcggagcataatttggggttctgagttatcggatctaaccgggtttattgggttaagttttgacggatctccggcggctgcagatgtcttcgtactggtgttaccggtgtacaaggtttgttagaatttcagttgggaacgatgttgtttgtcctcactgtgatagtggatttatagaagttgctgaggcaaatattgggtcgccggaatctcgccggaggtttcccatgtggaacgaacggccagagtcagatcggagtgtgaacatgggttctcgacggagcaggcgtaatcggggtgataaatctccgtttaatccgggtattggtcttcctaatccatctgaagctcctggggaagatgaagctgctgcagctgcagaagagcggagttacgagctttattatgatgattgtgaaaggtcaggtctcaggccgttgccgccgacgatgtcngagtttttgatgggatctggggtttgatcggttacttgatcagttagcacagatcgaggtgaacggttttagtcggccggaaaatccaccggcgtcgaaatcagcgattgaatcgatgccgattattcaaatagcttgtactcacgtaaattccgagacccattgcgctgtttgtaaagaagctttcgatttaggatctgaagctcgagaaatgccctgtaaaacatctaccattccgattgtattcttccatggctatctcttcgaaattcgtgccccgtttgccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94258" stop="92871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93959" g_stop="93171" g_length="789"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="788" r_length="788" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E435083" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E435083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93959" e_stop="93171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTCTCTTAGGAAACCTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCT-GGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCG</genome_strand>
        <mrna_strand>CTCTTTTCTCTTACGAGACCTTTTTTTTATTCTCCGGCGAGCCTAATCGGAGCATAATTT-GGGGTTCTGAGTTATCGGATCTAACCGGGTTTATTGGGTTAAGTTTTGACGGATCTCCGGCGGCTGCAGATGTCTTCGTACTGGTGTTACCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGGAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGCAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAAATCTCCGTTTAATCCGGGTATTGGTCTTCCTAATCCATCTGAAGCTCCTGGGGAAGATGAAGCTGCTGCAGCTGCAGAAGAGCGGAGTTACGAGCTTTATTATGATGATTGTGAAAGGTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCNGAGTTTTTGATGGGATCTGGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTAGTCGGCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAATCGATGCCGATTATTCAAATAGCTTGTACTCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAA-ACATCTACCATTCCGATTGTATTCTTCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407799" ref_strand="+" ref_description="SGN-E407799 [PPI-8-H15]">
      <seq>cttttttttattctccggcgagccctaatcggagcataatttggggttctgagttatcggaactaaccgggtttattgggttaagttttgaccggatctccggcggctgcagatgtcttcgtacctggtgttaccggtgtacaaggtttgttagaatttcagttgggaacgatgttgtttgtcctcactgtgatagtggatttatagaagttgatgagggaaatattgcgtcgccggaatctcgccggaggtttcccatgtggaaccaacggccagagtcagatcggagtgtgaacatgggttctcgacggagcaggcgtaatcggggagatagatctccgtttaatccggttattgttcttcgtagtccatcggaagctcctggggaggatgaagctgctgcagctgcagaggagcggagttacgagctttattatgatgatggtgaaggttcaggtctcaggccgttgccgccgacgatgtcggagtttttgatgggatctgggtttgatcggttacttgatcagttagcacagatcgaggtgaacgggttttggtcggccggaaaatcaccggcgtcgaaatcagcgattgaatcgatgccgattattcaaatagcttgtactcacgtaaattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94240" stop="93004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93940" g_stop="93304" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E407799" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93940" e_stop="93304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTATATTCTCCGGCGAG-CCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTG-ATCTCCGGCGACTGCAGATGTCTTCGTA-CTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAAC-GGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCG</genome_strand>
        <mrna_strand>CTTTTTTTTATTCTCCGGCGAGCCCTAATCGGAGCATAATTT-GGGGTTCTGAGTTATCGGAACTAACCGGGTTTATTGGGTTAAGTTTTGACCGGATCTCCGGCGGCTGCAGATGTCTTCGTACCTGGTGTTACCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGGAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGATGAGGGAAATATTGCGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACCAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGAGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCGGAAGCTCCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTACGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGGTTTTGGTCGGCCGGAAAAT-CACCGGCGTCGAAATCAGCGATTGAATCGATGCCGATTATTCAAATAGCTTGTACTCACGTAAATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410135" ref_strand="-" ref_description="SGN-E410135 [PPI-16-K13]">
      <seq>gaatttacgtgagtacaagctatttgaataatcggcatcgattcaatcgctgatttcgacgccggtggattttccggccgactaaaaccgttcacctcgatctgtgctaactgatcaagtaaccgatcaaacccagatcccatcaaaaactccgacatcgtcggcggcaacggcctgagacctgaaccttcaccatcatcataataaagctcgtaactccgctcctctgcagctgcagcagcttcatcctccccaggagcttcagatggactacgaagaacaataaccggattaaacggagatctatcaccccgattacgcctgctccgtcgagaacccatgttcacactccgatctgactctggccgttcgttccacatgggaaacctccggcgagattccggcgacccaatatttgcctcagcaacttctataaatccactatcacagtgaggacaaacaacatcgttcccaactgaaattctaacaaaccttgtacaccggtaacaccagtacgaagacatctgcagccgccggagatccgtcaaaacttaacccaataaacccggttagatccgataactcagaaccccaaattatgctccgattaggctcgccggagaataaaaaaaaggtctcgtaagagaaaaaaaaaaaaaaaaaaaaaaaaactcgagactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="+" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93006" stop="94277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93306" g_stop="93965" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="660" polyA_stop="672"/>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="+" ref_id="SGN-E410135" ref_strand="-">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410135" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93306" e_stop="93965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTACGTGATTTGAAGCTATTTGAATAATCGGCATCGACTCAATCGCTGATTTCGACGCCGGTGGATTTTCCGGGCGACCAAAACCGTTCACCTCGATCTGTGCTAACTGATCAAGTAACCGATCAAACCCAGATCCCATCAAAAACTCCGACATCGTCGGCGGCAACGGCCTGAGACCTGAACCTTCACCATCATCATAATAAAGCTCATAACTCCGCTCCTCTGCAGCTGCAGCAGCTTCATCCTCCCCAGGTGCTTCAGATGGACTACGAAGAACAATAACCGGATTAAACGGAGATCTATCACCCCGATTACGCCTGCTCCGTCGAGAACCCATGTTCACACTCCGATCTGACTCTGGCCGTTCGTTCCACATGGGAAACCTCCGGCGAGATTCCGGCGACCCAATATTTCCCTCAGCAACTTCTATAAATCCACTATCACAGTGAGGACAAACAACATCGTTTCCAACTGAAATTCTAACAAACCTTGTACACCGATAACACCAGTACGAAGACATCTGCAGTCGCCGGAGATCAGTCAAAACTCAACCCAATAAACCCGGTTAGATCCAATAACTCAAAACCCCCAAATTATGCTCCGATTTGGCTCGCCGGAGAATATAAAAAAGGTTTCCTAAGAGAAAAAAAGAAAAA</genome_strand>
        <mrna_strand>GAATTTACGTGAGTACAAGCTATTTGAATAATCGGCATCGATTCAATCGCTGATTTCGACGCCGGTGGATTTTCCGGCCGACTAAAACCGTTCACCTCGATCTGTGCTAACTGATCAAGTAACCGATCAAACCCAGATCCCATCAAAAACTCCGACATCGTCGGCGGCAACGGCCTGAGACCTGAACCTTCACCATCATCATAATAAAGCTCGTAACTCCGCTCCTCTGCAGCTGCAGCAGCTTCATCCTCCCCAGGAGCTTCAGATGGACTACGAAGAACAATAACCGGATTAAACGGAGATCTATCACCCCGATTACGCCTGCTCCGTCGAGAACCCATGTTCACACTCCGATCTGACTCTGGCCGTTCGTTCCACATGGGAAACCTCCGGCGAGATTCCGGCGACCCAATATTTGCCTCAGCAACTTCTATAAATCCACTATCACAGTGAGGACAAACAACATCGTTCCCAACTGAAATTCTAACAAACCTTGTACACCGGTAACACCAGTACGAAGACATCTGCAGCCGCCGGAGATCCGTCAAAACTTAACCCAATAAACCCGGTTAGATCCGATAACTCAGAA-CCCCAAATTATGCTCCGATTAGGCTCGCCGGAGAATAAAAAAAAGGTCTCGTAAGAGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210905" ref_strand="+" ref_description="SGN-E210905 [cLEC-69-E4]">
      <seq>tttatagaagttgctgagggaaatattgggtcgccggaatctcgccggaggtttcccatgtggaacgaacggccagagtcagatcggagtgtgaacatgggttctcgacggagcaggcgtaatcggggtgatagatctccgtttaatccggttattgttcttcgtagtccatctgaagcacctggggaggatgaagctgctgcagctgcagaggagcggagttatgagctttattatgatgatggtgaaggttcaggtctcaggccgttgccgccgacgatgtcggagtttttgatgggatctgggtttgatcggttacttgatcagttagcacagatcgaggtgaacggttttggtcgcccggaaaatccaccggcgtcgaaatcagcgattgagtcgatgccgattattcaaatagcttcaaatcacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94042" stop="93013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93742" g_stop="93313" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E210905" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93742" e_stop="93313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACG</genome_strand>
        <mrna_strand>TTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297776" ref_strand="+" ref_description="SGN-E297776 [cLET-38-I14]">
      <seq>gtgtacaaggtttgttagaatttcagttggaaacgatgttgtttgtcctcactgtgatagtggatttatagaagttgctgagggaaatattgggtcgccggaatctcgccggaggtttcccatgtggaacgaacggccagagtcagatcggagtgtgaacatgggttctcgacggagcaggcgtaatcggggtgatagatctccgtttaatccggttattgttcttcgtagtccatctgaagcacctggggaggatgaagctgctgcagctgcagaggagcggagttatgagctttattatgatgatggtgaaggttcaggtctcaggccgttgccgccgacgatgtcggagtttttgatgggatctgggtttgatcggttacttgatcagttagcacagatcgaggtgaacggttttggtcgcccggaaaatccaccggcgtcgaaatcagcgattgagtcgatgccgattattcaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94106" stop="93026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93806" g_stop="93326" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E297776" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93806" e_stop="93326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATA</genome_strand>
        <mrna_strand>GTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271916" ref_strand="+" ref_description="SGN-E271916 [cLEM-8-P6]">
      <seq>cattttcttctctctgtgctttttctttttttctcttaagaaaccttttttatattctccggcgagccaaatcggagcataatttgggggttttgagttattggatctaaccgggtttattgggttgagttttgactgatctccggcgactgcagatgtcttcgtactggtgttatcggtgtacaaggtttgttagaatttcagttggaaacgatgttgtttgtcctcactgtgatagtggatttatagaagttgctgagggaaatattgggtcgccggaatctcgccggaagtttcccatgtggaacgaacggccagagtcagatcggagtgtgaacatgggttctcgacggagcaggcgtaatcggggtgatagatctccgtttaatccggttattgttcttcgtagtccatctgaagcacctggggaggatgaagctgctgcaactgcagaggagcggagttatgagctttattatgatgatggtgaaggttcaagtctcaagccgttgccgccgacgatgtcggagtttttgatgggatctgggtttgatcggttacttgatcagttagcacagatcgaggtgaacggttttggtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94284" stop="93084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93984" g_stop="93384" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E271916" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93984" e_stop="93384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCTTCTCTCTGTGCTTTTTCTTTTTTTCTCTTAGGAAACCTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCG</genome_strand>
        <mrna_strand>CATTTTCTTCTCTCTGTGCTTTTTCTTTTTTTCTCTTAAGAAACCTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAAGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAACTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAAGTCTCAAGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E564199" ref_strand="+" ref_description="SGN-E564199 [2448]">
      <seq>caacgttcccccattttcctctgtactttttctttttttctcttacgagaccttttttttattctccggcgagcctaatcggagcataatttgcggttctgagttatcggatctaaccgggtttgttgggttaagttttgacggatctccggcggctgcagatgtcttcgtactggtgttaccggtgtacaaggtttgttagaatttcagttgggaacgatgttgtttgtcctcactgtgatagtggatttatagaagttgatgagccggaatctcgccggaggtttcccatgctgaacagacggccagagtcagatcggagtgtgaacatgggttctcgacggagcaggcgtaatcggggtgatagatctccgtttaatccggttattgttcttcgtagtccatctgaagctcctggggaggatgaagctgctgcagctgcagaggagcggagttacgagctttattatgatgatggtgaaggttcaggtctcaggccgttgccgccgacgatgtcggagttttgatgggatctgggtttgatcggttacttgatcagttagcacagatccgaggtgaacgggttttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94280" stop="93089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93996" g_stop="93385" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E564199" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.036" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E564199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93996" e_stop="93385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGCTACCCCCATTTTCTTCTCTCTGTGCTTTTTCTTTTTTTCTCTTAGGAAACCTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGAT-CGAGGTGAACGGTTTTGGTC</genome_strand>
        <mrna_strand>CAACGTT-CCCCCA-TT--TTC-CTCTGTACTTTTTCTTTTTTTCTCTTACGAGACCTTTTTTTTATTCTCCGGCGAGCCTAATCGGAGCATAATTTGCGG-TTCTGAGTTATCGGATCTAACCGGGTTTGTTGGGTTAAGTTTTGACGGATCTCCGGCGGCTGCAGATGTCTTCGTACTGGTGTTACCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGGAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAG-T--T----G----A-T--G-AGCCGGAATCTCGCCGGAGGTTTCCCATGCTGAACAGACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCTCCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTACGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAG-TTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCCGAGGTGAACGGGTTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341510" ref_strand="+" ref_description="SGN-E341510 [cTOE-23-P4]">
      <seq>cttctctctgtgctttttctttttttctcttaggaaaccttttttatattctccggcgagccaaatcggagcataatttgggggttttgagttattggatctaaccgggtttattgggttgagttttgactgatctccggcgactgcagatgtcttcgtactggtgttatcggtgtacaaggtttgttagaatttcagttggaaacgatgttgtttgtcctcactgtgatagtggatttatagaagttgctgagggaaatattgggtcgccggaatctcgccggaggtttcccatgtggaacgaacggccagagtcagatcggagtgtgaacatgggttctcgacggagcaggcgtaatcggggtgatagatctccgtttaatccggttattgttcttcgtagtccatctgaagcacctggggaggatgaagctgctgcagctgcagaggagcggagttatgagctttattatgatgatggtgaaggttcaggtctcaagccgttgccgccgacgatgtcggagtttttgatgggatctgggtttgatcggttacttgatcagttagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94278" stop="93109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93978" g_stop="93409" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E341510" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93978" e_stop="93409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTCTGTGCTTTTTCTTTTTTTCTCTTAGGAAACCTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCAC</genome_strand>
        <mrna_strand>CTTCTCTCTGTGCTTTTTCTTTTTTTCTCTTAGGAAACCTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAAGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443472" ref_strand="+" ref_description="SGN-E443472 [cSTA-38-C13]">
      <seq>tctaaccgggtttgttgggttaagttttgacggatctccggcggctgcagatgtcttcgtactggtgttaccggtgtacaaggtttgttagaatttcagttgggaacgatgttgtttgtcctcactgtgatagtggatttatagaagttgatgagccggaatctcgccggaggtttcccatgctgaacagacggccagagtcagatcggagtgtgaacatgggttctcgacggagcaggcgtaatcggggtgatagatctccgtttaatccggttattgttcttcgtagtccatctgaagctcctggggaggatgaagctgctgcagctgcagaggagcggagttacgagctttattatgatgatggtgaaggttcaggtctcaggccgttgccgccgacgatgtcggagtttttgatgggatctgggtttgatcggttacttgatcagttagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94179" stop="93111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93879" g_stop="93411" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E443472" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.033" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93879" e_stop="93411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGC</genome_strand>
        <mrna_strand>TCTAACCGGGTTTGTTGGGTTAAGTTTTGACGGATCTCCGGCGGCTGCAGATGTCTTCGTACTGGTGTTACCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGGAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAG-T--T----G----A-T--G-AGCCGGAATCTCGCCGGAGGTTTCCCATGCTGAACAGACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCTCCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTACGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E421404" ref_strand="+" ref_description="SGN-E421404 [STM-32-H6]">
      <seq>cccccattttcctctctgtactttttcttttttctcttacgagaccttttttttattctccggcgagcctaatcggagcataatttggggttctgagttatcggatctaaccgggtttattgggttaagttttgacggatctccggcggctgcagatgtcttcgtactggtgttaccggtgtacaaggtttgttagaatttcagttgggaacgatgttgtttgtcctcactgtgatagtggatttatagaagttgatgagggaaatattgcgtcgccggaatctcgccggaggtttcccatgtggaaccaacggccagagtcagatcggagtgtgaacatgggttctcgacggagcaggcgtaatcggggagatagatctccgtttaatccggttattgttcttcgtagtccatcggaagctcctgnggaggatgaagctgctgcagctgcagaggagcggagttacgagctttattatgatgatggtgaaggttcaggtctcaggccgttgccgccgacgatgtcngagtttttgatgggatctgggtttgatcggttacttgatcagttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94288" stop="93112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93988" g_stop="93412" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E421404" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93988" e_stop="93412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCATTTTCTTCTCTCTGTGCTTTTTCTTTTTTTCTCTTAGGAAACCTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAG</genome_strand>
        <mrna_strand>CCCCCATTTTC--CTCTCTGTACTTTTTCTT-TTTTCTCTTACGAGACCTTTTTTTTATTCTCCGGCGAGCCTAATCGGAGCATAATTTGGG-GTTCTGAGTTATCGGATCTAACCGGGTTTATTGGGTTAAGTTTTGACGGATCTCCGGCGGCTGCAGATGTCTTCGTACTGGTGTTACCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGGAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGATGAGGGAAATATTGCGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACCAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGAGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCGGAAGCTCCTGNGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTACGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCNGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726105" ref_strand="+" ref_description="SGN-E726105 [LA10BD03]">
      <seq>cttttttatattctccggcgagccaaatcggagcataatttgggggttttgagttattggatctaaccgggtttattgggttgagttttgactgatctccggcgactgcagatgtcttcgtactggtgttatcggtgtacaaggtttgttagaatttcagttggaaacgatgttgtttgtcctcactgtgatagtggatttatagaagttgctgagggaaatattgggtcgccggaatctcgccggaggtttcccatgtggaacgaacggccagagtcagatcggagtgtgaacatgggttctcgacggagcaggcgtaatcggggtgatagatctccgtttaatccggttattgttcttcgtagtccatctgaagcacctggggaggatgaagctgctgcagctgcagaggagcggagttatgagctttattatgatgatggtgaaggttcaggtctcaggccgttgccgccgacgatgtcggagtttttgatgggatctgggtttgatcggntacttgatcagttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94240" stop="93112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93940" g_stop="93412" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E726105" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93940" e_stop="93412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAG</genome_strand>
        <mrna_strand>CTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGNTACTTGATCAGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255400" ref_strand="+" ref_description="SGN-E255400 [cLEG-30-P5]">
      <seq>ttaaatataaaataattaattaacgatgaaatagtatttaccgctttactaacaggctcccacgcgtcttcgtgtttataaactctcttttttctcctttcttctttacctttcacgttcttcaacgctacccccattttcttctctctgtgctttttcttttttttctcttaggaaaccttttttatattctccggcgagccaaatcggagcataatttgggggttttgagttattggatctaaccgggtttattgggttgagttttgactgatctccggcgactgcagatgtcttcgtactggtgttatcggtgtacaaggtttgttagaatttcagttggaaacgatgttgtttgtcctcactgtgatagtggatttatagaagttgctgagggaaatattgggtcgccggaatctcgccggaggtttcccatgtggaacgaacggccagagtcagatcggagtgtgaacatgggttctcgacggagcaggcgtaatcggggtgatagatctccgtttaatccggttattgttcttcgtagtccatctgaagcacctggggaggatgaagctgctgcagctgcagaggagcggagttatgagctttattatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94418" stop="93201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94118" g_stop="93501" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E255400" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94118" e_stop="93501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATATAAAATAATTAATTAACGATGAAATAGTATTTACCGCTTTACTAACAGGCTCCCACGCGTCTTCGTGTTTATAAACTCTCTTTTTTCTCCTTTCTTCTTTACCTTTCACGTTCTTCAACGCTACCCCCATTTTCTTCTCTCTGTGCTTTTTC-TTTTTTTCTCTTAGGAAACCTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGA</genome_strand>
        <mrna_strand>TTAAATATAAAATAATTAATTAACGATGAAATAGTATTTACCGCTTTACTAACAGGCTCCCACGCGTCTTCGTGTTTATAAACTCTCTTTTTTCTCCTTTCTTCTTTACCTTTCACGTTCTTCAACGCTACCCCCATTTTCTTCTCTCTGTGCTTTTTCTTTTTTTTCTCTTAGGAAACCTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202184" ref_strand="+" ref_description="SGN-E202184 [cLEC-7-L13]">
      <seq>cgctacccccattttcttctctctgtgctttttctttttttctcttaggaaaccttttttatattctccggcgagccaaatcggagcataatttgggggttttgagttattggatctaaccgggtttattgggttgagttttgactgatctccggcgactgcagatgtcttcgtactggtgttatcggtgtacaaggtttgttagaatttcagttggaaacgatgttgtttgtcctcactgtgatagtggatttatagaagttgctgagggaaatattgggtcgccggaatctcgccggaggtttcccatgtggaacgaacggccagagtcagatcggagtgtgaacatgggttctcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94293" stop="93334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93993" g_stop="93634" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E202184" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93993" e_stop="93634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTACCCCCATTTTCTTCTCTCTGTGCTTTTTCTTTTTTTCTCTTAGGAAACCTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGAC</genome_strand>
        <mrna_strand>CGCTACCCCCATTTTCTTCTCTCTGTGCTTTTTCTTTTTTTCTCTTAGGAAACCTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258662" ref_strand="+" ref_description="SGN-E258662 [cLEG-50-K24]">
      <seq>gtttaaatataaaataattaattaacgatgaaatagtatttaccgctttactaacaggctcccacgcgtcttcgtgtttataaactctcttttttctcctttcttctttacctttcacgttcttcaacgctacccccattttcttctctctgtgctttttcttttttttctcttaggaaaccttttttatattctccggcgagccaaatcggagcataatttgggggttttgagttattggatctaaccgggtttattgggttgagttttgactgatctccggcgactgcagatgtcttcgtactggtgttatcggtgtacaaggtttgttagaatttcagttggaaacgatgttgtttgtcctcactgtgatagtggatttatagaagttgctgagggaaatattggggcgccggaatctcgccggaggtttcccatgtggaacgaacggccagagtcagatcggagtgtgaacatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94419" stop="93343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94120" g_stop="93643" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E258662" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94120" e_stop="93643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAAATATAAAATAATTAATTAACGATGAAATAGTATTTACCGCTTTACTAACAGGCTCCCACGCGTCTTCGTGTTTATAAACTCTCTTTTTTCTCCTTTCTTCTTTACCTTTCACGTTCTTCAACGCTACCCCCATTTTCTTCTCTCTGTGCTTTTTC-TTTTTTTCTCTTAGGAAACCTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGG</genome_strand>
        <mrna_strand>GTTTAAATATAAAATAATTAATTAACGATGAAATAGTATTTACCGCTTTACTAACAGGCTCCCACGCGTCTTCGTGTTTATAAACTCTCTTTTTTCTCCTTTCTTCTTTACCTTTCACGTTCTTCAACGCTACCCCCATTTTCTTCTCTCTGTGCTTTTTCTTTTTTTTCTCTTAGGAAACCTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGGCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303892" ref_strand="+" ref_description="SGN-E303892 [cLEX-4-O5]">
      <seq>ttatattctccggcgagccaaatcggagcataatttgggggttttgagttattggatctaaccgggtttattgggttgagttttgactgatctccggcgactgcagatgtcttcgtactggtgttatcggtgtacaaggtttgttagaatttcaattggaaacgatgttgtttgtcctcactgagatagtggatttatagaagttgctgacggaaacattgggtcgccagaatctctccggaggtttcccatgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0158P14-tliQa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0158P14.2" temp_strand="-" temp_description="C06HBa0158P14.2  AC211056.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0158P14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94235" stop="93379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93935" g_stop="93679" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0158P14.2" gen_strand="-" ref_id="SGN-E303892" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>257</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0158P14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93935" e_stop="93679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGA</genome_strand>
        <mrna_strand>TTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAATTGGAAACGATGTTGTTTGTCCTCACTGAGATAGTGGATTTATAGAAGTTGCTGACGGAAACATTGGGTCGCCAGAATCTCTCCGGAGGTTTCCCATGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>122</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="14879" PGL_stop="15075"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14879" e_stop="15075"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14879" e_stop="15075" e_length="197"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14879" stop="15075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14879" stop="15075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739547" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAATAGTACGAAGCAGCATGATTTCTTGAAGCAATCCGAATCCCCCCAGTTTAATGTGGCTTCTAATGCTCAGTCTGCGAAAGTACCATATTCTGTTGCTGTTACTGGCTCCAGTAGTTCATACCTCAAAGGATCCCCAACGTCGGGATTGAATGGTGGAGGTGGCGTACTGTCTCAGTATCCCCATTTGGATAG</gDNA_template>
            <first_frame> Q  N  S  T  K  Q  H  D  F  L  K  Q  S  E  S  P  Q  F  N  V  A  S  N  A  Q  S  A  K  V  P  Y  S  V  A  V  T  G  S  S  S  S  Y  L  K  G  S  P  T  S  G  L  N  G  G  G  G  V  L  S  Q  Y  P  H  L  D   </first_frame>
            <second_frame>  R  I  V  R  S  S  M  I  S  *  S  N  P  N  P  P  S  L  M  W  L  L  M  L  S  L  R  K  Y  H  I  L  L  L  L  L  A  P  V  V  H  T  S  K  D  P  Q  R  R  D  *  M  V  E  V  A  Y  C  L  S  I  P  I  W  I  </second_frame>
            <third_frame>   E  *  Y  E  A  A  *  F  L  E  A  I  R  I  P  P  V  *  C  G  F  *  C  S  V  C  E  S  T  I  F  C  C  C  Y  W  L  Q  *  F  I  P  Q  R  I  P  N  V  G  I  E  W  W  R  W  R  T  V  S  V  S  P  F  G  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0158P14.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14879" stop="15073"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNSTKQHDFLKQSESPQFNVASNAQSAKVPYSVAVTGSSSSYLKGSPTSGLNGGGGVLSQYPHLD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="15387" PGL_stop="20122"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15387" e_stop="15798"/>
            <exon e_start="15885" e_stop="16026"/>
            <exon e_start="16140" e_stop="16247"/>
            <exon e_start="16441" e_stop="16653"/>
            <exon e_start="16738" e_stop="16848"/>
            <exon e_start="17675" e_stop="17869"/>
            <exon e_start="19286" e_stop="19460"/>
            <exon e_start="19709" e_stop="20122"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.789" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="0.995"/>
          <exon-intron don_prob="0.923" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15387" e_stop="15798" e_length="412"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.959">
            <gDNA_intron_boundary i_start="15799" i_stop="15884" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15885" e_stop="16026" e_length="142"/>
          </exon>
          <intron i_serial="2" don_prob="0.926" acc_prob="0.991">
            <gDNA_intron_boundary i_start="16027" i_stop="16139" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16140" e_stop="16247" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.789" acc_prob="0.998">
            <gDNA_intron_boundary i_start="16248" i_stop="16440" i_length="193"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="16441" e_stop="16653" e_length="213"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="16654" i_stop="16737" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16738" e_stop="16848" e_length="111"/>
          </exon>
          <intron i_serial="5" don_prob="0.923" acc_prob="0.961">
            <gDNA_intron_boundary i_start="16849" i_stop="17674" i_length="826"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17675" e_stop="17869" e_length="195"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="17870" i_stop="19285" i_length="1416"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="19286" e_stop="19460" e_length="175"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19461" i_stop="19708" i_length="248"/>
          </intron>
          <exon e_serial="8" e_score="0.990">
            <gDNA_exon_boundary e_start="19709" e_stop="20122" e_length="414"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15387" stop="15798"/>
              <exon start="15885" stop="16026"/>
              <exon start="16140" stop="16247"/>
              <exon start="16441" stop="16638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16506" stop="16653"/>
              <exon start="16738" stop="16848"/>
              <exon start="17675" stop="17869"/>
              <exon start="19286" stop="19460"/>
              <exon start="19709" stop="19900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16537" stop="16653"/>
              <exon start="16738" stop="16848"/>
              <exon start="17675" stop="17869"/>
              <exon start="19286" stop="19460"/>
              <exon start="19709" stop="19815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16613" stop="16653"/>
              <exon start="16738" stop="16848"/>
              <exon start="17675" stop="17869"/>
              <exon start="19286" stop="19427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16789" stop="16848"/>
              <exon start="17675" stop="17869"/>
              <exon start="19286" stop="19460"/>
              <exon start="19709" stop="19965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17690" stop="17869"/>
              <exon start="19286" stop="19412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17786" stop="17869"/>
              <exon start="19286" stop="19460"/>
              <exon start="19709" stop="20122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17786" stop="17869"/>
              <exon start="19286" stop="19460"/>
              <exon start="19709" stop="20019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17850" stop="17869"/>
              <exon start="19286" stop="19460"/>
              <exon start="19709" stop="19804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19401" stop="19460"/>
              <exon start="19709" stop="20097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389508" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTTGGACAGGAACTATATGGGTAATTCATATGTGGACTTGTTTCAGAAAGCTTATCTCAGTAGTGTGCTACCTCAGAAATCTCAATATGGGGTCCCATTAAATAGCAAGACTAGCGGTTCAGGTCATCCTGGCTATTATGGAAATTCTGCATTTGGAGTTGGTCTATCATATCCTGGGAGTCCTTTAGCAAGTCCAGTCTCTCCAGTAGGACCTGGTAGTCCTATGAGGCATAGTGATTATAATATGAGATTTCCTGGTAGAATAAGAAACATAGCTGGAGGTGTCATGGGACCATATCACTTGGATAACATGGAGAACAGCGTCGCATCCTCCCTACTGGAGGAGTTCAAAAGCAACAAGGCCAAGTGTTTTGAACTTTCAGAAATTGCAGGTCACGTTGTTGAGTTCAG : TGCTGACCAGTATGGGAGCCGATTCATTCAACAAAAACTCGAAACTGCAACCACTGAGGAAAAAAACATGGTTTTCCAGGAAATTTTCCCCCAAGCTCTTACTTTGATGACTGATGTCTTTGGGAATTATGTAATCCAGAAG : TTTTTTGAACATGGAATGGCATCTCAGAGGAGAGAATTGGCTAGCATACTCTTTGGGCATGTTCTAACGCTGAGCCTTCAAATGTATGGTTGTCGTGTGATACAAAAG : GCAATAGAAGTAGTTGACGTGGACCAGAAAATTAAAATGGTTGAGGAGCTTGATGGTCATGTTATGCGCTGTGTACGAGATCAGAATGGTAATCATGTCATTCAGAAATGTATTGAATGCGTACCAGAACTTCATATCCAATTTATCGTCTCAACATTTTTTGGACAAGTTATTACTCTCTCAACCCATCCATATGGCTGTCGAGTTATACAG : AGAGTATTGGAACACTGTGACAATCCAGAAACTCAAAGTAAAGTGATGGAAGAAATCCTTGGATCTGTAAGCATGTTGGCACAAGATCAATATGGCAATTATGTTGTTCAG : CATGTATTGGAGCACGGGAAGCCGGATGAGCGCTCTACTATAATTCAGGAACTAGCTGGGAAGATTGTACAAATGAGCCAGCAGAAATTTGCTTCGAACGTTGTTGAGAAGTGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGAAAATGAGCCTCTTCAG : GCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACGGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGG : AAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGTACAGCTAACTGAGGCTAGTTTGAGCTACCTATCTTCCACATCTGTGTTTTGTTATTTGCAAATAAAAGTTGTTGCATGTACTAGAGGAGATGTACATTGTGTAGTTAAAAAAACATAAATATCAGGTATGCTGAAGCTCAGATGTCAAATATTCGAGATGGCTGTGCAGATGGAAGTTGAGGTGTAAAAAAAAAGGAAGATAAAAAAGGCGAGGTAGTTTTACATCGACGCGACTGTACAAATGTTGCCTTTTGTTGGAGAGTTGATGTTTTAGGGGAAGGTCAGAATTTTATTGTATGGTATTTCGACAATTTTATTTCTTTTATGGCCAAGTATATTCTACTTCATCTCAAA</gDNA_template>
            <first_frame> P  W  T  G  T  I  W  V  I  H  M  W  T  C  F  R  K  L  I  S  V  V  C  Y  L  R  N  L  N  M  G  S  H  *  I  A  R  L  A  V  Q  V  I  L  A  I  M  E  I  L  H  L  E  L  V  Y  H  I  L  G  V  L  *  Q  V  Q  S  L  Q  *  D  L  V  V  L  *  G  I  V  I  I  I  *  D  F  L  V  E  *  E  T  *  L  E  V  S  W  D  H  I  T  W  I  T  W  R  T  A  S  H  P  P  Y  W  R  S  S  K  A  T  R  P  S  V  L  N  F  Q  K  L  Q  V  T  L  L  S  S   : V  L  T  S  M  G  A  D  S  F  N  K  N  S  K  L  Q  P  L  R  K  K  T  W  F  S  R  K  F  S  P  K  L  L  L  *  *  L  M  S  L  G  I  M  *  S  R  S :   F  L  N  M  E  W  H  L  R  G  E  N  W  L  A  Y  S  L  G  M  F  *  R  *  A  F  K  C  M  V  V  V  *  Y  K  R :   Q  *  K  *  L  T  W  T  R  K  L  K  W  L  R  S  L  M  V  M  L  C  A  V  Y  E  I  R  M  V  I  M  S  F  R  N  V  L  N  A  Y  Q  N  F  I  S  N  L  S  S  Q  H  F  L  D  K  L  L  L  S  Q  P  I  H  M  A  V  E  L  Y  R :   E  Y  W  N  T  V  T  I  Q  K  L  K  V  K  *  W  K  K  S  L  D  L  *  A  C  W  H  K  I  N  M  A  I  M  L  F  S :   M  Y  W  S  T  G  S  R  M  S  A  L  L  *  F  R  N  *  L  G  R  L  Y  K  *  A  S  R  N  L  L  R  T  L  L  R  S  V  *  L  S  V  I  P  V  N  D  S  Y  W  *  M  R  C  L  A  Q  L  M  K  M  S  L  F  R :   L  *  *  K  I  S  L  Q  I  M  *  Y  R  R  F  W  K  L  V  V  I  S  N  A  S  *  S  C  R  E  L  K  F  T  *  M  L  *  R  N  I  L  T  E  S  I  L  S  P  V  L  K  S  *  L  L  L  G  :  K  G  G  L  L  R  S  P  *  V  L  L  S  H  V  G  K  E  S  C  T  A  N  *  G  *  F  E  L  P  I  F  H  I  C  V  L  L  F  A  N  K  S  C  C  M  Y  *  R  R  C  T  L  C  S  *  K  N  I  N  I  R  Y  A  E  A  Q  M  S  N  I  R  D  G  C  A  D  G  S  *  G  V  K  K  K  E  D  K  K  G  E  V  V  L  H  R  R  D  C  T  N  V  A  F  C  W  R  V  D  V  L  G  E  G  Q  N  F  I  V  W  Y  F  D  N  F  I  S  F  M  A  K  Y  I  L  L  H  L  K </first_frame>
            <second_frame>  L  G  Q  E  L  Y  G  *  F  I  C  G  L  V  S  E  S  L  S  Q  *  C  A  T  S  E  I  S  I  W  G  P  I  K  *  Q  D  *  R  F  R  S  S  W  L  L  W  K  F  C  I  W  S  W  S  I  I  S  W  E  S  F  S  K  S  S  L  S  S  R  T  W  *  S  Y  E  A  *  *  L  *  Y  E  I  S  W  *  N  K  K  H  S  W  R  C  H  G  T  I  S  L  G  *  H  G  E  Q  R  R  I  L  P  T  G  G  V  Q  K  Q  Q  G  Q  V  F  *  T  F  R  N  C  R  S  R  C  *  V  Q  :  C  *  P  V  W  E  P  I  H  S  T  K  T  R  N  C  N  H  *  G  K  K  H  G  F  P  G  N  F  P  P  S  S  Y  F  D  D  *  C  L  W  E  L  C  N  P  E   : V  F  *  T  W  N  G  I  S  E  E  R  I  G  *  H  T  L  W  A  C  S  N  A  E  P  S  N  V  W  L  S  C  D  T  K   : G  N  R  S  S  *  R  G  P  E  N  *  N  G  *  G  A  *  W  S  C  Y  A  L  C  T  R  S  E  W  *  S  C  H  S  E  M  Y  *  M  R  T  R  T  S  Y  P  I  Y  R  L  N  I  F  W  T  S  Y  Y  S  L  N  P  S  I  W  L  S  S  Y  T   : E  S  I  G  T  L  *  Q  S  R  N  S  K  *  S  D  G  R  N  P  W  I  C  K  H  V  G  T  R  S  I  W  Q  L  C  C  S   : A  C  I  G  A  R  E  A  G  *  A  L  Y  Y  N  S  G  T  S  W  E  D  C  T  N  E  P  A  E  I  C  F  E  R  C  *  E  V  F  N  F  L  *  F  Q  *  T  T  A  I  G  E  *  D  A  W  H  N  *  *  K  *  A  S  S   : G  Y  D  E  R  S  V  C  K  L  C  S  T  E  G  S  G  N  L  *  *  S  A  T  R  A  D  H  V  E  N  *  S  S  L  E  C  S  E  E  I  Y  L  R  K  A  Y  C  R  P  C  *  K  A  S  C  C  W  G :   K  E  D  C  C  A  V  P  K  Y  C  L  V  M  *  E  K  K  V  V  Q  L  T  E  A  S  L  S  Y  L  S  S  T  S  V  F  C  Y  L  Q  I  K  V  V  A  C  T  R  G  D  V  H  C  V  V  K  K  T  *  I  S  G  M  L  K  L  R  C  Q  I  F  E  M  A  V  Q  M  E  V  E  V  *  K  K  R  K  I  K  K  A  R  *  F  Y  I  D  A  T  V  Q  M  L  P  F  V  G  E  L  M  F  *  G  K  V  R  I  L  L  Y  G  I  S  T  I  L  F  L  L  W  P  S  I  F  Y  F  I  S   </second_frame>
            <third_frame>   L  D  R  N  Y  M  G  N  S  Y  V  D  L  F  Q  K  A  Y  L  S  S  V  L  P  Q  K  S  Q  Y  G  V  P  L  N  S  K  T  S  G  S  G  H  P  G  Y  Y  G  N  S  A  F  G  V  G  L  S  Y  P  G  S  P  L  A  S  P  V  S  P  V  G  P  G  S  P  M  R  H  S  D  Y  N  M  R  F  P  G  R  I  R  N  I  A  G  G  V  M  G  P  Y  H  L  D  N  M  E  N  S  V  A  S  S  L  L  E  E  F  K  S  N  K  A  K  C  F  E  L  S  E  I  A  G  H  V  V  E  F  S :   A  D  Q  Y  G  S  R  F  I  Q  Q  K  L  E  T  A  T  T  E  E  K  N  M  V  F  Q  E  I  F  P  Q  A  L  T  L  M  T  D  V  F  G  N  Y  V  I  Q  K  :  F  F  E  H  G  M  A  S  Q  R  R  E  L  A  S  I  L  F  G  H  V  L  T  L  S  L  Q  M  Y  G  C  R  V  I  Q  K  :  A  I  E  V  V  D  V  D  Q  K  I  K  M  V  E  E  L  D  G  H  V  M  R  C  V  R  D  Q  N  G  N  H  V  I  Q  K  C  I  E  C  V  P  E  L  H  I  Q  F  I  V  S  T  F  F  G  Q  V  I  T  L  S  T  H  P  Y  G  C  R  V  I  Q  :  R  V  L  E  H  C  D  N  P  E  T  Q  S  K  V  M  E  E  I  L  G  S  V  S  M  L  A  Q  D  Q  Y  G  N  Y  V  V  Q  :  H  V  L  E  H  G  K  P  D  E  R  S  T  I  I  Q  E  L  A  G  K  I  V  Q  M  S  Q  Q  K  F  A  S  N  V  V  E  K  C  L  T  F  C  N  S  S  E  R  Q  L  L  V  N  E  M  L  G  T  T  D  E  N  E  P  L  Q  :  A  M  M  K  D  Q  F  A  N  Y  V  V  Q  K  V  L  E  T  C  S  D  Q  Q  R  E  L  I  M  S  R  I  K  V  H  L  N  A  L  K  K  Y  T  Y  G  K  H  I  V  A  R  V  E  K  L  V  A  A  G   : E  R  R  I  A  A  Q  S  L  S  T  A  *  S  C  R  K  R  K  L  Y  S  *  L  R  L  V  *  A  T  Y  L  P  H  L  C  F  V  I  C  K  *  K  L  L  H  V  L  E  E  M  Y  I  V  *  L  K  K  H  K  Y  Q  V  C  *  S  S  D  V  K  Y  S  R  W  L  C  R  W  K  L  R  C  K  K  K  G  R  *  K  R  R  G  S  F  T  S  T  R  L  Y  K  C  C  L  L  L  E  S  *  C  F  R  G  R  S  E  F  Y  C  M  V  F  R  Q  F  Y  F  F  Y  G  Q  V  Y  S  T  S  S  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0158P14.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15389" stop="15798"/>
                    <exon start="15885" stop="16026"/>
                    <exon start="16140" stop="16247"/>
                    <exon start="16441" stop="16653"/>
                    <exon start="16738" stop="16848"/>
                    <exon start="17675" stop="17869"/>
                    <exon start="19286" stop="19460"/>
                    <exon start="19709" stop="19746"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1389</number_coding_nucleotides>
                  <number_encoded_amino_acids>463</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDRNYMGNSYVDLFQKAYLSSVLPQKSQYGVPLNSKTSGSGHPGYYGNSAFGVGLSYPGSPLASPVSPVGPGSPMRHSDYNMRFPGRIRNIAGGVMGPYHLDNMENSVASSLLEEFKSNKAKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIFPQALTLMTDVFGNYVIQKFFEHGMASQRRELASILFGHVLTLSLQMYGCRVIQKAIEVVDVDQKIKMVEELDGHVMRCVRDQNGNHVIQKCIECVPELHIQFIVSTFFGQVITLSTHPYGCRVIQRVLEHCDNPETQSKVMEEILGSVSMLAQDQYGNYVVQHVLEHGKPDERSTIIQELAGKIVQMSQQKFASNVVEKCLTFCNSSERQLLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCSDQQRELIMSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSLSTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="17289" e_stop="17869"/>
            <exon e_start="19286" e_stop="19460"/>
            <exon e_start="19709" e_stop="20122"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="0.933"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="17289" e_stop="17869" e_length="581"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="17870" i_stop="19285" i_length="1416"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19286" e_stop="19460" e_length="175"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19461" i_stop="19708" i_length="248"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="19709" e_stop="20122" e_length="414"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17289" stop="17869"/>
              <exon start="19286" stop="19372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17289" stop="17869"/>
              <exon start="19286" stop="19336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17690" stop="17869"/>
              <exon start="19286" stop="19412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17786" stop="17869"/>
              <exon start="19286" stop="19460"/>
              <exon start="19709" stop="20122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17786" stop="17869"/>
              <exon start="19286" stop="19460"/>
              <exon start="19709" stop="20019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17850" stop="17869"/>
              <exon start="19286" stop="19460"/>
              <exon start="19709" stop="19804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19401" stop="19460"/>
              <exon start="19709" stop="20097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389508" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATTGAAAAACTATTCACAAAAAATTTCAACCATATGCACGCACATACACATTCACGTGGTTCTCTAGTGTTACCAATGTATGCCGTCACCCTTAACAGGATGCTAAATGGGGAACCTAGTACCTGTTCTGGCTAGAAGAAAAAGGTTATTAAGAAATGGTATTCCCCTCTATTATAAGACAGAAGCCCTTCTTGAGTTCTTATTTGCTTCCTTTGATTTTGTTTTAATAGAGTATTAGTGAGTGAAAGCGCTCTTTTATTCGGTTAAAAGTTTGCTTGTAAAAATTTAGCAAAGATGTCTTGCATCCCTATACTGAGGTACAATTCGACCTTTTTTCCTTGTACTTATTCATCCCTCTGTTGTTTCAAATGCAATACTTCCAGCATGTATTGGAGCACGGGAAGCCGGATGAGCGCTCTACTATAATTCAGGAACTAGCTGGGAAGATTGTACAAATGAGCCAGCAGAAATTTGCTTCGAACGTTGTTGAGAAGTGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTGAATGAGATGCTTGGCACAACTGATGAAAATGAGCCTCTTCAG : GCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACGGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGG : AAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGTACAGCTAACTGAGGCTAGTTTGAGCTACCTATCTTCCACATCTGTGTTTTGTTATTTGCAAATAAAAGTTGTTGCATGTACTAGAGGAGATGTACATTGTGTAGTTAAAAAAACATAAATATCAGGTATGCTGAAGCTCAGATGTCAAATATTCGAGATGGCTGTGCAGATGGAAGTTGAGGTGTAAAAAAAAAGGAAGATAAAAAAGGCGAGGTAGTTTTACATCGACGCGACTGTACAAATGTTGCCTTTTGTTGGAGAGTTGATGTTTTAGGGGAAGGTCAGAATTTTATTGTATGGTATTTCGACAATTTTATTTCTTTTATGGCCAAGTATATTCTACTTCATCTCAAA</gDNA_template>
            <first_frame> K  I  E  K  L  F  T  K  N  F  N  H  M  H  A  H  T  H  S  R  G  S  L  V  L  P  M  Y  A  V  T  L  N  R  M  L  N  G  E  P  S  T  C  S  G  *  K  K  K  V  I  K  K  W  Y  S  P  L  L  *  D  R  S  P  S  *  V  L  I  C  F  L  *  F  C  F  N  R  V  L  V  S  E  S  A  L  L  F  G  *  K  F  A  C  K  N  L  A  K  M  S  C  I  P  I  L  R  Y  N  S  T  F  F  P  C  T  Y  S  S  L  C  C  F  K  C  N  T  S  S  M  Y  W  S  T  G  S  R  M  S  A  L  L  *  F  R  N  *  L  G  R  L  Y  K  *  A  S  R  N  L  L  R  T  L  L  R  S  V  *  L  S  V  I  P  V  N  D  S  Y  W  *  M  R  C  L  A  Q  L  M  K  M  S  L  F  R :   L  *  *  K  I  S  L  Q  I  M  *  Y  R  R  F  W  K  L  V  V  I  S  N  A  S  *  S  C  R  E  L  K  F  T  *  M  L  *  R  N  I  L  T  E  S  I  L  S  P  V  L  K  S  *  L  L  L  G  :  K  G  G  L  L  R  S  P  *  V  L  L  S  H  V  G  K  E  S  C  T  A  N  *  G  *  F  E  L  P  I  F  H  I  C  V  L  L  F  A  N  K  S  C  C  M  Y  *  R  R  C  T  L  C  S  *  K  N  I  N  I  R  Y  A  E  A  Q  M  S  N  I  R  D  G  C  A  D  G  S  *  G  V  K  K  K  E  D  K  K  G  E  V  V  L  H  R  R  D  C  T  N  V  A  F  C  W  R  V  D  V  L  G  E  G  Q  N  F  I  V  W  Y  F  D  N  F  I  S  F  M  A  K  Y  I  L  L  H  L  K </first_frame>
            <second_frame>  K  L  K  N  Y  S  Q  K  I  S  T  I  C  T  H  I  H  I  H  V  V  L  *  C  Y  Q  C  M  P  S  P  L  T  G  C  *  M  G  N  L  V  P  V  L  A  R  R  K  R  L  L  R  N  G  I  P  L  Y  Y  K  T  E  A  L  L  E  F  L  F  A  S  F  D  F  V  L  I  E  Y  *  *  V  K  A  L  F  Y  S  V  K  S  L  L  V  K  I  *  Q  R  C  L  A  S  L  Y  *  G  T  I  R  P  F  F  L  V  L  I  H  P  S  V  V  S  N  A  I  L  P  A  C  I  G  A  R  E  A  G  *  A  L  Y  Y  N  S  G  T  S  W  E  D  C  T  N  E  P  A  E  I  C  F  E  R  C  *  E  V  F  N  F  L  *  F  Q  *  T  T  A  I  G  E  *  D  A  W  H  N  *  *  K  *  A  S  S   : G  Y  D  E  R  S  V  C  K  L  C  S  T  E  G  S  G  N  L  *  *  S  A  T  R  A  D  H  V  E  N  *  S  S  L  E  C  S  E  E  I  Y  L  R  K  A  Y  C  R  P  C  *  K  A  S  C  C  W  G :   K  E  D  C  C  A  V  P  K  Y  C  L  V  M  *  E  K  K  V  V  Q  L  T  E  A  S  L  S  Y  L  S  S  T  S  V  F  C  Y  L  Q  I  K  V  V  A  C  T  R  G  D  V  H  C  V  V  K  K  T  *  I  S  G  M  L  K  L  R  C  Q  I  F  E  M  A  V  Q  M  E  V  E  V  *  K  K  R  K  I  K  K  A  R  *  F  Y  I  D  A  T  V  Q  M  L  P  F  V  G  E  L  M  F  *  G  K  V  R  I  L  L  Y  G  I  S  T  I  L  F  L  L  W  P  S  I  F  Y  F  I  S   </second_frame>
            <third_frame>   N  *  K  T  I  H  K  K  F  Q  P  Y  A  R  T  Y  T  F  T  W  F  S  S  V  T  N  V  C  R  H  P  *  Q  D  A  K  W  G  T  *  Y  L  F  W  L  E  E  K  G  Y  *  E  M  V  F  P  S  I  I  R  Q  K  P  F  L  S  S  Y  L  L  P  L  I  L  F  *  *  S  I  S  E  *  K  R  S  F  I  R  L  K  V  C  L  *  K  F  S  K  D  V  L  H  P  Y  T  E  V  Q  F  D  L  F  S  L  Y  L  F  I  P  L  L  F  Q  M  Q  Y  F  Q  H  V  L  E  H  G  K  P  D  E  R  S  T  I  I  Q  E  L  A  G  K  I  V  Q  M  S  Q  Q  K  F  A  S  N  V  V  E  K  C  L  T  F  C  N  S  S  E  R  Q  L  L  V  N  E  M  L  G  T  T  D  E  N  E  P  L  Q  :  A  M  M  K  D  Q  F  A  N  Y  V  V  Q  K  V  L  E  T  C  S  D  Q  Q  R  E  L  I  M  S  R  I  K  V  H  L  N  A  L  K  K  Y  T  Y  G  K  H  I  V  A  R  V  E  K  L  V  A  A  G   : E  R  R  I  A  A  Q  S  L  S  T  A  *  S  C  R  K  R  K  L  Y  S  *  L  R  L  V  *  A  T  Y  L  P  H  L  C  F  V  I  C  K  *  K  L  L  H  V  L  E  E  M  Y  I  V  *  L  K  K  H  K  Y  Q  V  C  *  S  S  D  V  K  Y  S  R  W  L  C  R  W  K  L  R  C  K  K  K  G  R  *  K  R  R  G  S  F  T  S  T  R  L  Y  K  C  C  L  L  L  E  S  *  C  F  R  G  R  S  E  F  Y  C  M  V  F  R  Q  F  Y  F  F  Y  G  Q  V  Y  S  T  S  S  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0158P14.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17573" stop="17869"/>
                    <exon start="19286" stop="19460"/>
                    <exon start="19709" stop="19746"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFSKDVLHPYTEVQFDLFSLYLFIPLLFQMQYFQHVLEHGKPDERSTIIQELAGKIVQMSQQKFASNVVEKCLTFCNSSERQLLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCSDQQRELIMSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSLSTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="18238" e_stop="19460"/>
            <exon e_start="19709" e_stop="20097"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.982"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="18238" e_stop="19460" e_length="1223"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19461" i_stop="19708" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19709" e_stop="20097" e_length="389"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18238" stop="19111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18561" stop="19277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18561" stop="19261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18562" stop="19186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19243" stop="19460"/>
              <exon start="19709" stop="20077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19401" stop="19460"/>
              <exon start="19709" stop="20097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389508" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTAGAGATTGCTGAACTAATGATTGTTGTCTTTTGGTGGGCCTCTATTGAGATACAACCCTATCAAGTTCTTTACCTCTGTTTATGTTCCTGTTCCTGTTGAGATGCATGGCATTGCAGTCTCAGATTAATCGCTAAGGTTCCCAGCTGTTTTAATTTTAGGATGTAGCTTGAATGGGACATCAGTCTCTTAAGAAAGGTTGAACTTGGAAGAAAAAATTGGTATAACCGATATTTTGTGGCACTTGTTTTTGAAAGGCAAGAAGTGGTTGAAGATGAAGTTACCAAACAATCATTCATTAATCCCGATTCTTCTATTATTCAGTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGAAGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTCAAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGCTGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGGCAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCATGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGACATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGATGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTGTTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCATGCTATTACTCTTTGCATCTTTGGGAATAGAGTTTATCTAAGAAGTACTACCACATGTACCTATGGTTTTGATTTTGGTAGCAGTTGTAACATATAAACTTTTAAATAGTCTTGTTTCTCTTCTCTCTTCTCTAATTGAAATCAGTTGTGCATTGTGTTTTCACATCTTTCTTCTTTTTATCCAGGCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACGGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGG : AAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGTACAGCTAACTGAGGCTAGTTTGAGCTACCTATCTTCCACATCTGTGTTTTGTTATTTGCAAATAAAAGTTGTTGCATGTACTAGAGGAGATGTACATTGTGTAGTTAAAAAAACATAAATATCAGGTATGCTGAAGCTCAGATGTCAAATATTCGAGATGGCTGTGCAGATGGAAGTTGAGGTGTAAAAAAAAAGGAAGATAAAAAAGGCGAGGTAGTTTTACATCGACGCGACTGTACAAATGTTGCCTTTTGTTGGAGAGTTGATGTTTTAGGGGAAGGTCAGAATTTTATTGTATGGTATTTCGACAATTTTATTTCTTTTATGGC</gDNA_template>
            <first_frame> P  R  D  C  *  T  N  D  C  C  L  L  V  G  L  Y  *  D  T  T  L  S  S  S  L  P  L  F  M  F  L  F  L  L  R  C  M  A  L  Q  S  Q  I  N  R  *  G  S  Q  L  F  *  F  *  D  V  A  *  M  G  H  Q  S  L  K  K  G  *  T  W  K  K  K  L  V  *  P  I  F  C  G  T  C  F  *  K  A  R  S  G  *  R  *  S  Y  Q  T  I  I  H  *  S  R  F  F  Y  Y  S  V  S  *  L  Q  K  L  T  Q  K  N  L  K  T  N  C  C  R  I  E  D  K  I  L  N  S  L  A  L  F  K  L  K  S  W  I  M  L  N  S  K  *  A  Q  K  *  Y  V  L  A  I  I  S  K  L  L  L  K  L  A  A  L  *  P  A  L  T  C  P  *  Q  L  L  K  G  I  *  N  *  G  K  W  *  C  C  I  S  F  W  L  L  I  Y  S  P  F  Q  T  Y  H  G  W  R  A  E  V  A  V  S  S  D  L  C  I  L  F  V  L  F  D  I  L  T  C  L  V  P  F  *  Q  N  Y  S  T  L  D  A  *  T  D  V  L  E  L  F  S  K  K  D  G  A  S  G  V  G  V  R  L  E  C  F  L  Y  V  K  I  P  R  V  F  Y  I  I  I  L  P  Q  Q  Y  H  A  I  T  L  C  I  F  G  N  R  V  Y  L  R  S  T  T  T  C  T  Y  G  F  D  F  G  S  S  C  N  I  *  T  F  K  *  S  C  F  S  S  L  F  S  N  *  N  Q  L  C  I  V  F  S  H  L  S  S  F  Y  P  G  Y  D  E  R  S  V  C  K  L  C  S  T  E  G  S  G  N  L  *  *  S  A  T  R  A  D  H  V  E  N  *  S  S  L  E  C  S  E  E  I  Y  L  R  K  A  Y  C  R  P  C  *  K  A  S  C  C  W  G :   K  E  D  C  C  A  V  P  K  Y  C  L  V  M  *  E  K  K  V  V  Q  L  T  E  A  S  L  S  Y  L  S  S  T  S  V  F  C  Y  L  Q  I  K  V  V  A  C  T  R  G  D  V  H  C  V  V  K  K  T  *  I  S  G  M  L  K  L  R  C  Q  I  F  E  M  A  V  Q  M  E  V  E  V  *  K  K  R  K  I  K  K  A  R  *  F  Y  I  D  A  T  V  Q  M  L  P  F  V  G  E  L  M  F  *  G  K  V  R  I  L  L  Y  G  I  S  T  I  L  F  L  L  W  </first_frame>
            <second_frame>  L  E  I  A  E  L  M  I  V  V  F  W  W  A  S  I  E  I  Q  P  Y  Q  V  L  Y  L  C  L  C  S  C  S  C  *  D  A  W  H  C  S  L  R  L  I  A  K  V  P  S  C  F  N  F  R  M  *  L  E  W  D  I  S  L  L  R  K  V  E  L  G  R  K  N  W  Y  N  R  Y  F  V  A  L  V  F  E  R  Q  E  V  V  E  D  E  V  T  K  Q  S  F  I  N  P  D  S  S  I  I  Q  F  P  S  S  K  N  *  P  R  K  T  S  K  P  T  V  A  E  L  K  I  R  Y  *  T  L  L  L  Y  S  N  *  N  H  G  L  C  *  I  Q  N  K  H  K  S  D  M  C  *  L  *  F  L  N  F  S  *  N  *  L  H  C  D  Q  H  *  L  A  L  D  S  C  *  K  A  F  E  T  E  A  N  G  D  V  A  *  V  F  G  C  *  F  I  H  R  S  K  H  I  M  V  G  G  Q  R  *  L  S  L  L  T  F  V  F  C  L  C  F  L  T  S  *  H  V  W  S  H  F  N  K  T  T  R  L  W  M  L  R  L  M  C  W  N  S  S  Q  K  K  M  E  Q  V  G  W  V  F  A  W  S  V  F  S  M  S  R  Y  P  E  F  S  I  *  L  F  Y  L  N  N  I  M  L  L  L  F  A  S  L  G  I  E  F  I  *  E  V  L  P  H  V  P  M  V  L  I  L  V  A  V  V  T  Y  K  L  L  N  S  L  V  S  L  L  S  S  L  I  E  I  S  C  A  L  C  F  H  I  F  L  L  F  I  Q  A  M  M  K  D  Q  F  A  N  Y  V  V  Q  K  V  L  E  T  C  S  D  Q  Q  R  E  L  I  M  S  R  I  K  V  H  L  N  A  L  K  K  Y  T  Y  G  K  H  I  V  A  R  V  E  K  L  V  A  A  G   : E  R  R  I  A  A  Q  S  L  S  T  A  *  S  C  R  K  R  K  L  Y  S  *  L  R  L  V  *  A  T  Y  L  P  H  L  C  F  V  I  C  K  *  K  L  L  H  V  L  E  E  M  Y  I  V  *  L  K  K  H  K  Y  Q  V  C  *  S  S  D  V  K  Y  S  R  W  L  C  R  W  K  L  R  C  K  K  K  G  R  *  K  R  R  G  S  F  T  S  T  R  L  Y  K  C  C  L  L  L  E  S  *  C  F  R  G  R  S  E  F  Y  C  M  V  F  R  Q  F  Y  F  F  Y  G </second_frame>
            <third_frame>   *  R  L  L  N  *  *  L  L  S  F  G  G  P  L  L  R  Y  N  P  I  K  F  F  T  S  V  Y  V  P  V  P  V  E  M  H  G  I  A  V  S  D  *  S  L  R  F  P  A  V  L  I  L  G  C  S  L  N  G  T  S  V  S  *  E  R  L  N  L  E  E  K  I  G  I  T  D  I  L  W  H  L  F  L  K  G  K  K  W  L  K  M  K  L  P  N  N  H  S  L  I  P  I  L  L  L  F  S  F  L  A  P  K  I  N  P  E  K  P  Q  N  Q  L  L  P  N  *  R  *  D  I  E  L  S  C  F  I  Q  T  K  I  M  D  Y  V  E  F  K  I  S  T  K  V  I  C  V  S  Y  N  F  *  T  S  L  K  T  S  C  T  V  T  S  I  D  L  P  L  T  V  A  K  R  H  L  K  L  R  Q  M  V  M  L  H  K  F  L  V  V  N  L  F  T  V  P  N  I  S  W  L  A  G  R  G  S  C  L  F  *  P  L  Y  F  V  C  A  F  *  H  L  D  M  F  G  P  I  L  T  K  L  L  D  F  G  C  L  D  *  C  V  G  T  L  L  K  K  R  W  S  K  W  G  G  C  S  P  G  V  F  S  L  C  Q  D  T  P  S  F  L  Y  N  Y  F  T  S  T  I  S  C  Y  Y  S  L  H  L  W  E  *  S  L  S  K  K  Y  Y  H  M  Y  L  W  F  *  F  W  *  Q  L  *  H  I  N  F  *  I  V  L  F  L  F  S  L  L  *  L  K  S  V  V  H  C  V  F  T  S  F  F  F  L  S  R  L  *  *  K  I  S  L  Q  I  M  *  Y  R  R  F  W  K  L  V  V  I  S  N  A  S  *  S  C  R  E  L  K  F  T  *  M  L  *  R  N  I  L  T  E  S  I  L  S  P  V  L  K  S  *  L  L  L  G  :  K  G  G  L  L  R  S  P  *  V  L  L  S  H  V  G  K  E  S  C  T  A  N  *  G  *  F  E  L  P  I  F  H  I  C  V  L  L  F  A  N  K  S  C  C  M  Y  *  R  R  C  T  L  C  S  *  K  N  I  N  I  R  Y  A  E  A  Q  M  S  N  I  R  D  G  C  A  D  G  S  *  G  V  K  K  K  E  D  K  K  G  E  V  V  L  H  R  R  D  C  T  N  V  A  F  C  W  R  V  D  V  L  G  E  G  Q  N  F  I  V  W  Y  F  D  N  F  I  S  F  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0158P14.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19142" stop="19460"/>
                    <exon start="19709" stop="19746"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVLPHVPMVLILVAVVTYKLLNSLVSLLSSLIEISCALCFHIFLLFIQAMMKDQFANYVVQKVLETCSDQQRELIMSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSLSTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="44235" PGL_stop="48121"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44235" e_stop="44536"/>
            <exon e_start="45335" e_stop="45567"/>
            <exon e_start="45878" e_stop="46330"/>
            <exon e_start="46500" e_stop="46568"/>
            <exon e_start="46827" e_stop="46885"/>
            <exon e_start="47426" e_stop="48121"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="0.984"/>
          <exon-intron don_prob="0.368" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.913" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44235" e_stop="44536" e_length="302"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="44537" i_stop="45334" i_length="798"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45335" e_stop="45567" e_length="233"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="45568" i_stop="45877" i_length="310"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="45878" e_stop="46330" e_length="453"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="46331" i_stop="46499" i_length="169"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46500" e_stop="46568" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.368" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46569" i_stop="46826" i_length="258"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="46827" e_stop="46885" e_length="59"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.913">
            <gDNA_intron_boundary i_start="46886" i_stop="47425" i_length="540"/>
          </intron>
          <exon e_serial="6" e_score="0.985">
            <gDNA_exon_boundary e_start="47426" e_stop="48121" e_length="696"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44235" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="46106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44241" stop="44536"/>
              <exon start="45335" stop="45471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44247" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="45991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44253" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="45964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44254" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="46184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44254" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="46176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44257" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="46330"/>
              <exon start="46500" stop="46568"/>
              <exon start="46827" stop="46885"/>
              <exon start="47426" stop="48050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746251" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44266" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="45946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44300" stop="44536"/>
              <exon start="45335" stop="45456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44311" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="46202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44320" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="46018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44332" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="45967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44353" stop="44536"/>
              <exon start="45335" stop="45454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44364" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="46067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44366" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="45935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44393" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="46097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44394" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="45986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44398" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="45927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44398" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="45927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44429" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="46150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44440" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="45899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44445" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="46282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44474" stop="44536"/>
              <exon start="45335" stop="45432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44517" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="46036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45350" stop="45567"/>
              <exon start="45878" stop="46160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45511" stop="45567"/>
              <exon start="45878" stop="46310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45513" stop="45567"/>
              <exon start="45878" stop="46182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45513" stop="45567"/>
              <exon start="45878" stop="46153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281302" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45900" stop="46330"/>
              <exon start="46500" stop="46568"/>
              <exon start="46827" stop="46885"/>
              <exon start="47426" stop="47758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45999" stop="46330"/>
              <exon start="46500" stop="46519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46021" stop="46330"/>
              <exon start="46500" stop="46568"/>
              <exon start="46827" stop="46885"/>
              <exon start="47426" stop="47636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46102" stop="46330"/>
              <exon start="46500" stop="46568"/>
              <exon start="46827" stop="46885"/>
              <exon start="47426" stop="47943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46131" stop="46330"/>
              <exon start="46500" stop="46568"/>
              <exon start="46827" stop="46885"/>
              <exon start="47426" stop="47615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46178" stop="46330"/>
              <exon start="46500" stop="46568"/>
              <exon start="46827" stop="46885"/>
              <exon start="47426" stop="48100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46238" stop="46330"/>
              <exon start="46500" stop="46568"/>
              <exon start="46827" stop="46885"/>
              <exon start="47426" stop="47748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47555" stop="48115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47583" stop="48111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47593" stop="48003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47658" stop="47956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47671" stop="48121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47697" stop="48098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614943" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCAAATGCCACAGATATACAATTTCATATATTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG : GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG : GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAA : GTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAG : GTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAG : CGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCTACTAGACAAAGCAAAAGACTTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACTAAGATGAATGAATAAGAGAAAGCCAAAATATTAATTTTCTATATATCATTTTAGCCTAATTATGAGGTTACAAACAATGGTTTAACTGAGGCTGAGTGAGAAAGCATGTAAATCCCTGCACATTTTCTGTGGATCTTAGTGTATATTTGCCTCAAATGCAACATTCAGGCACTTGTTC</gDNA_template>
            <first_frame> I  K  C  H  R  Y  T  I  S  Y  I  F  F  K  K  K  N  T  I  F  M  Q  N  I  V  T  K  *  K  E  L  A  I  H  L  L  F  L  S  K  K  I  K  *  K  F  I  S  Y  G  S  N  S  Y  F  K  F  I  S  P  F  N  Y  T  S  S  K  I  I  I  Q  K  S  K  I  H  C  F  C  *  K  I  W  T  K  S  R  N  Y  N  Q  F  W  Q  P  L  Q  L  *  F  R :   *  V  T  *  C  D  V  F  D  T  C  *  H  E  H  I  F  W  I  V  F  W  K  A  K  G  K  G  S  W  N  G  V  C  C  W  C  N  W  A  S  W  Y  P  H  C  T  V  A  V  A  *  R  L  *  C  Q  S  W  S  F  *  P  W  C  C  T  R  A  S  S  S  S  R  *  L  Q   : G  N  L  *  R  *  V  K  T  S  E  C  S  C  I  I  I  S  R  C  R  I  D  C  K  G  N  R  K  C  *  Q  S  C  G  Y  Y  *  *  G  R  G  R  S  C  D  *  S  H  H  N  R  C  C  T  S  Y  R  S  S  T  I  S  W  R  W  T  C  G  H  S  L  *  *  I  F  S  S  R  L  Y  I  Q  C  A  R  R  N  Y  I  I  L  Q  Q  S  V  L  K  I  S  T  V  D  D  S  R  V  S  A  E  D  S  R  D  R  P  K  L  Y  T  H  K  N  Q  I  N  *  R  F  L  P  *  E  L  I  Q  N  R  R  F  S  *  R  K  C  *  C  *  R  L  *   : S  G  E  V  S  D  S  *  A  R  C  G  C  F  L  Q  H  S  G  G  R  K  *   : G  C  R  S  L  C  *  S  I  S  T  A  K  D  C  G  *  T  F  *  :  R  H  S  *  G  W  S  E  K  G  L  C  R  S  P  *  K  I  E  S  *  G  R  S  S  R  S  C  *  S  I  Q  E  A  G  T  R  S  K  E  A  *  K  E  R  S  K  G  C  C  Y  H  R  K  G  T  *  R  E  G  V  I  T  F  R  S  F  C  *  K  S  T  R  Q  S  K  R  L  *  Y  R  I  F  I  *  K  T  Q  L  T  A  Q  I  S  C  *  K  G  *  R  G  I  R  R  S  S  C  Y  R  *  G  T  G  Q  G  *  K  F  A  C  S  E  S  S  G  E  N  S  S  K  E  T  I  C  F  E  N  E  E  G  G  S  E  T  S  *  T  N  R  G  C  F  N  R  E  E  E  D  F  W  W  T  V  S  T  R  N  H  L  C  *  *  L  R  *  M  N  K  R  K  P  K  Y  *  F  S  I  Y  H  F  S  L  I  M  R  L  Q  T  M  V  *  L  R  L  S  E  K  A  C  K  S  L  H  I  F  C  G  S  *  C  I  F  A  S  N  A  T  F  R  H  L  F </first_frame>
            <second_frame>  S  N  A  T  D  I  Q  F  H  I  F  F  L  K  K  K  T  Q  F  S  C  K  I  *  *  L  N  R  K  N  *  Q  F  I  C  Y  F  F  Q  K  K  *  N  K  N  S  Y  P  M  A  P  T  L  T  S  N  S  F  L  L  S  T  T  P  H  P  R  L  S  F  K  N  P  R  F  I  V  S  A  K  K  S  G  Q  N  Q  E  T  T  T  N  S  G  N  P  F  N  F  D  F   : G  K  L  P  D  V  T  S  L  I  P  A  S  T  N  T  S  S  G  L  S  F  G  R  Q  R  A  K  D  P  G  T  V  F  V  A  G  A  T  G  Q  A  G  I  R  I  A  Q  L  L  L  R  E  G  Y  S  V  R  A  G  V  S  D  L  G  A  A  Q  E  L  A  R  L  A  V  S  Y  K  :  V  I  S  N  D  E  S  K  R  L  N  A  V  A  S  S  F  Q  D  A  E  S  I  A  K  A  I  G  N  A  N  K  V  V  V  T  I  S  K  G  E  D  G  P  A  T  E  V  T  T  T  D  A  V  Q  V  I  E  A  A  Q  L  A  G  V  G  H  V  A  I  V  Y  D  E  S  S  P  V  G  S  T  Y  N  V  L  D  G  I  T  S  F  F  N  N  L  F  S  K  S  Q  P  L  T  I  A  E  F  L  Q  K  I  V  E  T  D  L  S  Y  T  L  I  K  T  R  L  T  D  D  F  S  P  E  S  S  Y  K  I  V  V  S  A  E  G  S  A  D  A  D  A  Y  K  :  V  G  K  S  Q  I  A  K  L  V  V  D  V  F  S  N  T  A  V  A  E  N  K  :  V  V  E  V  F  A  D  P  S  A  P  P  K  T  V  D  E  L  F  S :   V  I  P  E  D  G  R  R  K  A  Y  A  E  A  L  E  K  S  K  A  E  E  E  A  R  G  V  A  E  A  S  K  R  Q  E  Q  E  A  K  K  L  E  K  K  E  A  K  A  A  A  T  I  A  K  E  P  E  E  K  A  S  S  P  S  V  P  S  V  E  S  L  L  D  K  A  K  D  F  S  T  G  F  S  F  E  K  L  S  S  Q  L  K  S  A  V  E  K  A  N  E  E  S  D  A  Q  V  A  T  V  R  G  Q  A  K  A  K  N  L  P  A  Q  K  A  V  V  K  T  P  P  R  K  P  F  A  S  K  T  K  K  E  A  P  K  P  A  K  Q  T  E  V  A  S  T  E  K  R  K  I  F  G  G  L  F  Q  Q  E  T  I  Y  V  D  D  *  D  E  *  I  R  E  S  Q  N  I  N  F  L  Y  I  I  L  A  *  L  *  G  Y  K  Q  W  F  N  *  G  *  V  R  K  H  V  N  P  C  T  F  S  V  D  L  S  V  Y  L  P  Q  M  Q  H  S  G  T  C   </second_frame>
            <third_frame>   Q  M  P  Q  I  Y  N  F  I  Y  F  F  *  K  K  K  H  N  F  H  A  K  Y  S  N  *  I  E  R  I  S  N  S  S  A  I  S  F  K  K  N  K  I  K  I  H  I  L  W  L  Q  L  L  L  Q  I  H  F  S  F  Q  L  H  L  I  Q  D  Y  H  S  K  I  Q  D  S  L  F  L  L  K  N  L  D  K  I  K  K  L  Q  P  I  L  A  T  P  S  T  L  I  S  :  V  S  Y  L  M  *  R  L  *  Y  L  L  A  R  T  H  L  L  D  C  L  L  E  G  K  G  Q  R  I  L  E  R  C  L  L  L  V  Q  L  G  K  L  V  S  A  L  H  S  C  C  C  V  K  V  I  V  S  E  L  E  F  L  T  L  V  L  H  K  S  *  L  V  *  P  L  A  T  R :   *  S  L  T  M  S  Q  N  V  *  M  Q  L  H  H  H  F  K  M  Q  N  R  L  Q  R  Q  S  E  M  L  T  K  L  W  L  L  L  V  R  E  R  T  V  L  R  L  K  S  P  Q  Q  M  L  Y  K  L  *  K  Q  H  N  *  L  A  L  D  M  W  P  *  S  M  M  N  L  L  Q  *  A  L  H  T  M  C  S  T  E  L  H  H  S  S  T  I  C  S  Q  N  L  N  R  *  R  *  Q  S  F  C  R  R  *  *  R  Q  T  *  A  I  H  S  *  K  P  D  *  L  T  I  S  P  L  R  A  H  T  K  S  S  F  Q  L  K  E  V  L  M  L  T  P  I  K :   W  G  S  L  R  *  L  S  S  L  W  M  F  S  P  T  Q  R  W  Q  K  I  R :   L  S  K  S  L  L  I  H  Q  H  R  Q  R  L  W  M  N  F  L   : A  S  F  L  R  M  V  G  E  R  P  M  Q  K  P  L  K  N  R  K  L  R  K  K  L  E  E  L  L  K  H  P  R  G  R  N  K  K  Q  R  S  L  K  R  K  K  Q  R  L  L  L  P  S  Q  R  N  L  K  R  R  R  H  H  L  P  F  L  L  L  K  V  Y  *  T  K  Q  K  T  L  V  Q  D  F  H  L  K  N  S  A  H  S  S  N  Q  L  L  K  R  L  T  R  N  Q  T  L  K  L  L  P  L  G  D  R  P  R  L  K  I  C  L  L  R  K  Q  W  *  K  L  L  Q  G  N  H  L  L  R  K  R  R  R  R  L  R  N  Q  L  N  K  Q  R  L  L  Q  Q  R  R  G  R  F  L  V  D  C  F  N  K  K  P  S  M  L  M  T  K  M  N  E  *  E  K  A  K  I  L  I  F  Y  I  S  F  *  P  N  Y  E  V  T  N  N  G  L  T  E  A  E  *  E  S  M  *  I  P  A  H  F  L  W  I  L  V  Y  I  C  L  K  C  N  I  Q  A  L  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0158P14.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44362" stop="44536"/>
                    <exon start="45335" stop="45567"/>
                    <exon start="45878" stop="46330"/>
                    <exon start="46500" stop="46568"/>
                    <exon start="46827" stop="46885"/>
                    <exon start="47426" stop="47945"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1506</number_coding_nucleotides>
                  <number_encoded_amino_acids>502</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKNSYPMAPTLTSNSFLLSTTPHPRLSFKNPRFIVSAKKSGQNQETTTNSGNPFNFDFGKLPDVTSLIPASTNTSSGLSFGRQRAKDPGTVFVAGATGQAGIRIAQLLLREGYSVRAGVSDLGAAQELARLAVSYKVISNDESKRLNAVASSFQDAESIAKAIGNANKVVVTISKGEDGPATEVTTTDAVQVIEAAQLAGVGHVAIVYDESSPVGSTYNVLDGITSFFNNLFSKSQPLTIAEFLQKIVETDLSYTLIKTRLTDDFSPESSYKIVVSAEGSADADAYKVGKSQIAKLVVDVFSNTAVAENKVVEVFADPSAPPKTVDELFSVIPEDGRRKAYAEALEKSKAEEEARGVAEASKRQEQEAKKLEKKEAKAAATIAKEPEEKASSPSVPSVESLLDKAKDFSTGFSFEKLSSQLKSAVEKANEESDAQVATVRGQAKAKNLPAQKAVVKTPPRKPFASKTKKEAPKPAKQTEVASTEKRKIFGGLFQQETIYVDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="44235" e_stop="44536"/>
            <exon e_start="45335" e_stop="45567"/>
            <exon e_start="45878" e_stop="46335"/>
            <exon e_start="46500" e_stop="46568"/>
            <exon e_start="46827" e_stop="46885"/>
            <exon e_start="47426" e_stop="48121"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.368" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.913" e_score="1.000"/>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44235" e_stop="44536" e_length="302"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="44537" i_stop="45334" i_length="798"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45335" e_stop="45567" e_length="233"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="45568" i_stop="45877" i_length="310"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45878" e_stop="46335" e_length="458"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="46336" i_stop="46499" i_length="164"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46500" e_stop="46568" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.368" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46569" i_stop="46826" i_length="258"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="46827" e_stop="46885" e_length="59"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.913">
            <gDNA_intron_boundary i_start="46886" i_stop="47425" i_length="540"/>
          </intron>
          <exon e_serial="6" e_score="0.947">
            <gDNA_exon_boundary e_start="47426" e_stop="48121" e_length="696"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44235" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="46106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44241" stop="44536"/>
              <exon start="45335" stop="45471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44247" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="45991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44253" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="45964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44254" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="46184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44254" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="46176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44266" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="45946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44300" stop="44536"/>
              <exon start="45335" stop="45456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44311" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="46202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44320" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="46018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44332" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="45967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44353" stop="44536"/>
              <exon start="45335" stop="45454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44364" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="46067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44366" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="45935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44393" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="46097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44394" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="45986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44398" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="45927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44398" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="45927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44429" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="46150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44440" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="45899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44445" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="46282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44474" stop="44536"/>
              <exon start="45335" stop="45432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44517" stop="44536"/>
              <exon start="45335" stop="45567"/>
              <exon start="45878" stop="46036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45350" stop="45567"/>
              <exon start="45878" stop="46160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45476" stop="45567"/>
              <exon start="45878" stop="46335"/>
              <exon start="46500" stop="46568"/>
              <exon start="46827" stop="46885"/>
              <exon start="47426" stop="47620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45511" stop="45567"/>
              <exon start="45878" stop="46310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45513" stop="45567"/>
              <exon start="45878" stop="46182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45513" stop="45567"/>
              <exon start="45878" stop="46153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281302" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47555" stop="48115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47583" stop="48111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47593" stop="48003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47658" stop="47956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47671" stop="48121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47697" stop="48098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614943" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCAAATGCCACAGATATACAATTTCATATATTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG : GTAAGTTACCTGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG : GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAAGTAAT : GTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAG : GTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAG : CGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCTACTAGACAAAGCAAAAGACTTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACTAAGATGAATGAATAAGAGAAAGCCAAAATATTAATTTTCTATATATCATTTTAGCCTAATTATGAGGTTACAAACAATGGTTTAACTGAGGCTGAGTGAGAAAGCATGTAAATCCCTGCACATTTTCTGTGGATCTTAGTGTATATTTGCCTCAAATGCAACATTCAGGCACTTGTTC</gDNA_template>
            <first_frame> I  K  C  H  R  Y  T  I  S  Y  I  F  F  K  K  K  N  T  I  F  M  Q  N  I  V  T  K  *  K  E  L  A  I  H  L  L  F  L  S  K  K  I  K  *  K  F  I  S  Y  G  S  N  S  Y  F  K  F  I  S  P  F  N  Y  T  S  S  K  I  I  I  Q  K  S  K  I  H  C  F  C  *  K  I  W  T  K  S  R  N  Y  N  Q  F  W  Q  P  L  Q  L  *  F  R :   *  V  T  *  C  D  V  F  D  T  C  *  H  E  H  I  F  W  I  V  F  W  K  A  K  G  K  G  S  W  N  G  V  C  C  W  C  N  W  A  S  W  Y  P  H  C  T  V  A  V  A  *  R  L  *  C  Q  S  W  S  F  *  P  W  C  C  T  R  A  S  S  S  S  R  *  L  Q   : G  N  L  *  R  *  V  K  T  S  E  C  S  C  I  I  I  S  R  C  R  I  D  C  K  G  N  R  K  C  *  Q  S  C  G  Y  Y  *  *  G  R  G  R  S  C  D  *  S  H  H  N  R  C  C  T  S  Y  R  S  S  T  I  S  W  R  W  T  C  G  H  S  L  *  *  I  F  S  S  R  L  Y  I  Q  C  A  R  R  N  Y  I  I  L  Q  Q  S  V  L  K  I  S  T  V  D  D  S  R  V  S  A  E  D  S  R  D  R  P  K  L  Y  T  H  K  N  Q  I  N  *  R  F  L  P  *  E  L  I  Q  N  R  R  F  S  *  R  K  C  *  C  *  R  L  *  S  N  :  V  G  K  S  Q  I  A  K  L  V  V  D  V  F  S  N  T  A  V  A  E  N  K  :  V  V  E  V  F  A  D  P  S  A  P  P  K  T  V  D  E  L  F  S :   V  I  P  E  D  G  R  R  K  A  Y  A  E  A  L  E  K  S  K  A  E  E  E  A  R  G  V  A  E  A  S  K  R  Q  E  Q  E  A  K  K  L  E  K  K  E  A  K  A  A  A  T  I  A  K  E  P  E  E  K  A  S  S  P  S  V  P  S  V  E  S  L  L  D  K  A  K  D  F  S  T  G  F  S  F  E  K  L  S  S  Q  L  K  S  A  V  E  K  A  N  E  E  S  D  A  Q  V  A  T  V  R  G  Q  A  K  A  K  N  L  P  A  Q  K  A  V  V  K  T  P  P  R  K  P  F  A  S  K  T  K  K  E  A  P  K  P  A  K  Q  T  E  V  A  S  T  E  K  R  K  I  F  G  G  L  F  Q  Q  E  T  I  Y  V  D  D  *  D  E  *  I  R  E  S  Q  N  I  N  F  L  Y  I  I  L  A  *  L  *  G  Y  K  Q  W  F  N  *  G  *  V  R  K  H  V  N  P  C  T  F  S  V  D  L  S  V  Y  L  P  Q  M  Q  H  S  G  T  C   </first_frame>
            <second_frame>  S  N  A  T  D  I  Q  F  H  I  F  F  L  K  K  K  T  Q  F  S  C  K  I  *  *  L  N  R  K  N  *  Q  F  I  C  Y  F  F  Q  K  K  *  N  K  N  S  Y  P  M  A  P  T  L  T  S  N  S  F  L  L  S  T  T  P  H  P  R  L  S  F  K  N  P  R  F  I  V  S  A  K  K  S  G  Q  N  Q  E  T  T  T  N  S  G  N  P  F  N  F  D  F   : G  K  L  P  D  V  T  S  L  I  P  A  S  T  N  T  S  S  G  L  S  F  G  R  Q  R  A  K  D  P  G  T  V  F  V  A  G  A  T  G  Q  A  G  I  R  I  A  Q  L  L  L  R  E  G  Y  S  V  R  A  G  V  S  D  L  G  A  A  Q  E  L  A  R  L  A  V  S  Y  K  :  V  I  S  N  D  E  S  K  R  L  N  A  V  A  S  S  F  Q  D  A  E  S  I  A  K  A  I  G  N  A  N  K  V  V  V  T  I  S  K  G  E  D  G  P  A  T  E  V  T  T  T  D  A  V  Q  V  I  E  A  A  Q  L  A  G  V  G  H  V  A  I  V  Y  D  E  S  S  P  V  G  S  T  Y  N  V  L  D  G  I  T  S  F  F  N  N  L  F  S  K  S  Q  P  L  T  I  A  E  F  L  Q  K  I  V  E  T  D  L  S  Y  T  L  I  K  T  R  L  T  D  D  F  S  P  E  S  S  Y  K  I  V  V  S  A  E  G  S  A  D  A  D  A  Y  K  V  M :   W  G  S  L  R  *  L  S  S  L  W  M  F  S  P  T  Q  R  W  Q  K  I  R :   L  S  K  S  L  L  I  H  Q  H  R  Q  R  L  W  M  N  F  L   : A  S  F  L  R  M  V  G  E  R  P  M  Q  K  P  L  K  N  R  K  L  R  K  K  L  E  E  L  L  K  H  P  R  G  R  N  K  K  Q  R  S  L  K  R  K  K  Q  R  L  L  L  P  S  Q  R  N  L  K  R  R  R  H  H  L  P  F  L  L  L  K  V  Y  *  T  K  Q  K  T  L  V  Q  D  F  H  L  K  N  S  A  H  S  S  N  Q  L  L  K  R  L  T  R  N  Q  T  L  K  L  L  P  L  G  D  R  P  R  L  K  I  C  L  L  R  K  Q  W  *  K  L  L  Q  G  N  H  L  L  R  K  R  R  R  R  L  R  N  Q  L  N  K  Q  R  L  L  Q  Q  R  R  G  R  F  L  V  D  C  F  N  K  K  P  S  M  L  M  T  K  M  N  E  *  E  K  A  K  I  L  I  F  Y  I  S  F  *  P  N  Y  E  V  T  N  N  G  L  T  E  A  E  *  E  S  M  *  I  P  A  H  F  L  W  I  L  V  Y  I  C  L  K  C  N  I  Q  A  L  V  </second_frame>
            <third_frame>   Q  M  P  Q  I  Y  N  F  I  Y  F  F  *  K  K  K  H  N  F  H  A  K  Y  S  N  *  I  E  R  I  S  N  S  S  A  I  S  F  K  K  N  K  I  K  I  H  I  L  W  L  Q  L  L  L  Q  I  H  F  S  F  Q  L  H  L  I  Q  D  Y  H  S  K  I  Q  D  S  L  F  L  L  K  N  L  D  K  I  K  K  L  Q  P  I  L  A  T  P  S  T  L  I  S  :  V  S  Y  L  M  *  R  L  *  Y  L  L  A  R  T  H  L  L  D  C  L  L  E  G  K  G  Q  R  I  L  E  R  C  L  L  L  V  Q  L  G  K  L  V  S  A  L  H  S  C  C  C  V  K  V  I  V  S  E  L  E  F  L  T  L  V  L  H  K  S  *  L  V  *  P  L  A  T  R :   *  S  L  T  M  S  Q  N  V  *  M  Q  L  H  H  H  F  K  M  Q  N  R  L  Q  R  Q  S  E  M  L  T  K  L  W  L  L  L  V  R  E  R  T  V  L  R  L  K  S  P  Q  Q  M  L  Y  K  L  *  K  Q  H  N  *  L  A  L  D  M  W  P  *  S  M  M  N  L  L  Q  *  A  L  H  T  M  C  S  T  E  L  H  H  S  S  T  I  C  S  Q  N  L  N  R  *  R  *  Q  S  F  C  R  R  *  *  R  Q  T  *  A  I  H  S  *  K  P  D  *  L  T  I  S  P  L  R  A  H  T  K  S  S  F  Q  L  K  E  V  L  M  L  T  P  I  K  *   : C  G  E  V  S  D  S  *  A  R  C  G  C  F  L  Q  H  S  G  G  R  K  *   : G  C  R  S  L  C  *  S  I  S  T  A  K  D  C  G  *  T  F  *  :  R  H  S  *  G  W  S  E  K  G  L  C  R  S  P  *  K  I  E  S  *  G  R  S  S  R  S  C  *  S  I  Q  E  A  G  T  R  S  K  E  A  *  K  E  R  S  K  G  C  C  Y  H  R  K  G  T  *  R  E  G  V  I  T  F  R  S  F  C  *  K  S  T  R  Q  S  K  R  L  *  Y  R  I  F  I  *  K  T  Q  L  T  A  Q  I  S  C  *  K  G  *  R  G  I  R  R  S  S  C  Y  R  *  G  T  G  Q  G  *  K  F  A  C  S  E  S  S  G  E  N  S  S  K  E  T  I  C  F  E  N  E  E  G  G  S  E  T  S  *  T  N  R  G  C  F  N  R  E  E  E  D  F  W  W  T  V  S  T  R  N  H  L  C  *  *  L  R  *  M  N  K  R  K  P  K  Y  *  F  S  I  Y  H  F  S  L  I  M  R  L  Q  T  M  V  *  L  R  L  S  E  K  A  C  K  S  L  H  I  F  C  G  S  *  C  I  F  A  S  N  A  T  F  R  H  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0158P14.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44362" stop="44536"/>
                    <exon start="45335" stop="45567"/>
                    <exon start="45878" stop="46335"/>
                    <exon start="46500" stop="46518"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>882</number_coding_nucleotides>
                  <number_encoded_amino_acids>294</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKNSYPMAPTLTSNSFLLSTTPHPRLSFKNPRFIVSAKKSGQNQETTTNSGNPFNFDFGKLPDVTSLIPASTNTSSGLSFGRQRAKDPGTVFVAGATGQAGIRIAQLLLREGYSVRAGVSDLGAAQELARLAVSYKVISNDESKRLNAVASSFQDAESIAKAIGNANKVVVTISKGEDGPATEVTTTDAVQVIEAAQLAGVGHVAIVYDESSPVGSTYNVLDGITSFFNNLFSKSQPLTIAEFLQKIVETDLSYTLIKTRLTDDFSPESSYKIVVSAEGSADADAYKVMWGSLR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0158P14.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46330" stop="46335"/>
                    <exon start="46500" stop="46568"/>
                    <exon start="46827" stop="46885"/>
                    <exon start="47426" stop="47945"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNVGKSQIAKLVVDVFSNTAVAENKVVEVFADPSAPPKTVDELFSVIPEDGRRKAYAEALEKSKAEEEARGVAEASKRQEQEAKKLEKKEAKAAATIAKEPEEKASSPSVPSVESLLDKAKDFSTGFSFEKLSSQLKSAVEKANEESDAQVATVRGQAKAKNLPAQKAVVKTPPRKPFASKTKKEAPKPAKQTEVASTEKRKIFGGLFQQETIYVDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="44256" e_stop="44536"/>
            <exon e_start="45372" e_stop="45567"/>
            <exon e_start="45878" e_stop="46330"/>
            <exon e_start="46500" e_stop="46568"/>
            <exon e_start="46827" e_stop="46885"/>
            <exon e_start="47426" e_stop="48121"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.990"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="0.984"/>
          <exon-intron don_prob="0.368" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.913" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44256" e_stop="44536" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44537" i_stop="45371" i_length="835"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="45372" e_stop="45567" e_length="196"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="45568" i_stop="45877" i_length="310"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="45878" e_stop="46330" e_length="453"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="46331" i_stop="46499" i_length="169"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46500" e_stop="46568" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.368" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46569" i_stop="46826" i_length="258"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="46827" e_stop="46885" e_length="59"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.913">
            <gDNA_intron_boundary i_start="46886" i_stop="47425" i_length="540"/>
          </intron>
          <exon e_serial="6" e_score="0.985">
            <gDNA_exon_boundary e_start="47426" e_stop="48121" e_length="696"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44256" stop="44536"/>
              <exon start="45372" stop="45567"/>
              <exon start="45878" stop="46107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45511" stop="45567"/>
              <exon start="45878" stop="46310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45513" stop="45567"/>
              <exon start="45878" stop="46182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45513" stop="45567"/>
              <exon start="45878" stop="46153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281302" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45900" stop="46330"/>
              <exon start="46500" stop="46568"/>
              <exon start="46827" stop="46885"/>
              <exon start="47426" stop="47758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45999" stop="46330"/>
              <exon start="46500" stop="46519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46021" stop="46330"/>
              <exon start="46500" stop="46568"/>
              <exon start="46827" stop="46885"/>
              <exon start="47426" stop="47636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46102" stop="46330"/>
              <exon start="46500" stop="46568"/>
              <exon start="46827" stop="46885"/>
              <exon start="47426" stop="47943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46131" stop="46330"/>
              <exon start="46500" stop="46568"/>
              <exon start="46827" stop="46885"/>
              <exon start="47426" stop="47615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46178" stop="46330"/>
              <exon start="46500" stop="46568"/>
              <exon start="46827" stop="46885"/>
              <exon start="47426" stop="48100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46238" stop="46330"/>
              <exon start="46500" stop="46568"/>
              <exon start="46827" stop="46885"/>
              <exon start="47426" stop="47748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47555" stop="48115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47583" stop="48111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47593" stop="48003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47658" stop="47956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47671" stop="48121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47697" stop="48098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614943" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTCATATATTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATAGTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAAAAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACCTCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACAAAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG : CACGAACACATCTTCTGGATTGTCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTATCCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG : GTAATCTCTAACGATGAGTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGCAATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGACTGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGGACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGACGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTTGACGATAGCAGAGTTTCTGCAGAAGATAGTAGAGACAGACCTAAGCTATACACTCATAAAAACCAGATTAACTGACGATTTCTCCCCTGAGAGCTCATACAAAATCGTCGTTTCAGCTGAAGGAAGTGCTGATGCTGACGCCTATAAA : GTGGGGAAGTCTCAGATAGCTAAGCTCGTTGTGGATGTTTTCTCCAACACAGCGGTGGCAGAAAATAAG : GTTGTCGAAGTCTTTGCTGATCCATCAGCACCGCCAAAGACTGTGGATGAACTTTTTAG : CGTCATTCCTGAGGATGGTCGGAGAAAGGCCTATGCAGAAGCCCTTGAAAAATCGAAAGCTGAGGAAGAAGCTCGAGGAGTTGCTGAAGCATCCAAGAGGCAGGAACAAGAAGCAAAGAAGCTTGAAAAGAAAGAAGCAAAGGCTGCTGCTACCATCGCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCTACTAGACAAAGCAAAAGACTTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAATCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAGGCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAACCATTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCAACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGACTAAGATGAATGAATAAGAGAAAGCCAAAATATTAATTTTCTATATATCATTTTAGCCTAATTATGAGGTTACAAACAATGGTTTAACTGAGGCTGAGTGAGAAAGCATGTAAATCCCTGCACATTTTCTGTGGATCTTAGTGTATATTTGCCTCAAATGCAACATTCAGGCACTTGTTC</gDNA_template>
            <first_frame> I  S  Y  I  F  F  K  K  K  N  T  I  F  M  Q  N  I  V  T  K  *  K  E  L  A  I  H  L  L  F  L  S  K  K  I  K  *  K  F  I  S  Y  G  S  N  S  Y  F  K  F  I  S  P  F  N  Y  T  S  S  K  I  I  I  Q  K  S  K  I  H  C  F  C  *  K  I  W  T  K  S  R  N  Y  N  Q  F  W  Q  P  L  Q  L  *  F  R :   T  N  T  S  S  G  L  S  F  G  R  Q  R  A  K  D  P  G  T  V  F  V  A  G  A  T  G  Q  A  G  I  R  I  A  Q  L  L  L  R  E  G  Y  S  V  R  A  G  V  S  D  L  G  A  A  Q  E  L  A  R  L  A  V  S  Y  K  :  V  I  S  N  D  E  S  K  R  L  N  A  V  A  S  S  F  Q  D  A  E  S  I  A  K  A  I  G  N  A  N  K  V  V  V  T  I  S  K  G  E  D  G  P  A  T  E  V  T  T  T  D  A  V  Q  V  I  E  A  A  Q  L  A  G  V  G  H  V  A  I  V  Y  D  E  S  S  P  V  G  S  T  Y  N  V  L  D  G  I  T  S  F  F  N  N  L  F  S  K  S  Q  P  L  T  I  A  E  F  L  Q  K  I  V  E  T  D  L  S  Y  T  L  I  K  T  R  L  T  D  D  F  S  P  E  S  S  Y  K  I  V  V  S  A  E  G  S  A  D  A  D  A  Y  K  :  V  G  K  S  Q  I  A  K  L  V  V  D  V  F  S  N  T  A  V  A  E  N  K  :  V  V  E  V  F  A  D  P  S  A  P  P  K  T  V  D  E  L  F  S :   V  I  P  E  D  G  R  R  K  A  Y  A  E  A  L  E  K  S  K  A  E  E  E  A  R  G  V  A  E  A  S  K  R  Q  E  Q  E  A  K  K  L  E  K  K  E  A  K  A  A  A  T  I  A  K  E  P  E  E  K  A  S  S  P  S  V  P  S  V  E  S  L  L  D  K  A  K  D  F  S  T  G  F  S  F  E  K  L  S  S  Q  L  K  S  A  V  E  K  A  N  E  E  S  D  A  Q  V  A  T  V  R  G  Q  A  K  A  K  N  L  P  A  Q  K  A  V  V  K  T  P  P  R  K  P  F  A  S  K  T  K  K  E  A  P  K  P  A  K  Q  T  E  V  A  S  T  E  K  R  K  I  F  G  G  L  F  Q  Q  E  T  I  Y  V  D  D  *  D  E  *  I  R  E  S  Q  N  I  N  F  L  Y  I  I  L  A  *  L  *  G  Y  K  Q  W  F  N  *  G  *  V  R  K  H  V  N  P  C  T  F  S  V  D  L  S  V  Y  L  P  Q  M  Q  H  S  G  T  C   </first_frame>
            <second_frame>  F  H  I  F  F  L  K  K  K  T  Q  F  S  C  K  I  *  *  L  N  R  K  N  *  Q  F  I  C  Y  F  F  Q  K  K  *  N  K  N  S  Y  P  M  A  P  T  L  T  S  N  S  F  L  L  S  T  T  P  H  P  R  L  S  F  K  N  P  R  F  I  V  S  A  K  K  S  G  Q  N  Q  E  T  T  T  N  S  G  N  P  F  N  F  D  F   : A  R  T  H  L  L  D  C  L  L  E  G  K  G  Q  R  I  L  E  R  C  L  L  L  V  Q  L  G  K  L  V  S  A  L  H  S  C  C  C  V  K  V  I  V  S  E  L  E  F  L  T  L  V  L  H  K  S  *  L  V  *  P  L  A  T  R :   *  S  L  T  M  S  Q  N  V  *  M  Q  L  H  H  H  F  K  M  Q  N  R  L  Q  R  Q  S  E  M  L  T  K  L  W  L  L  L  V  R  E  R  T  V  L  R  L  K  S  P  Q  Q  M  L  Y  K  L  *  K  Q  H  N  *  L  A  L  D  M  W  P  *  S  M  M  N  L  L  Q  *  A  L  H  T  M  C  S  T  E  L  H  H  S  S  T  I  C  S  Q  N  L  N  R  *  R  *  Q  S  F  C  R  R  *  *  R  Q  T  *  A  I  H  S  *  K  P  D  *  L  T  I  S  P  L  R  A  H  T  K  S  S  F  Q  L  K  E  V  L  M  L  T  P  I  K :   W  G  S  L  R  *  L  S  S  L  W  M  F  S  P  T  Q  R  W  Q  K  I  R :   L  S  K  S  L  L  I  H  Q  H  R  Q  R  L  W  M  N  F  L   : A  S  F  L  R  M  V  G  E  R  P  M  Q  K  P  L  K  N  R  K  L  R  K  K  L  E  E  L  L  K  H  P  R  G  R  N  K  K  Q  R  S  L  K  R  K  K  Q  R  L  L  L  P  S  Q  R  N  L  K  R  R  R  H  H  L  P  F  L  L  L  K  V  Y  *  T  K  Q  K  T  L  V  Q  D  F  H  L  K  N  S  A  H  S  S  N  Q  L  L  K  R  L  T  R  N  Q  T  L  K  L  L  P  L  G  D  R  P  R  L  K  I  C  L  L  R  K  Q  W  *  K  L  L  Q  G  N  H  L  L  R  K  R  R  R  R  L  R  N  Q  L  N  K  Q  R  L  L  Q  Q  R  R  G  R  F  L  V  D  C  F  N  K  K  P  S  M  L  M  T  K  M  N  E  *  E  K  A  K  I  L  I  F  Y  I  S  F  *  P  N  Y  E  V  T  N  N  G  L  T  E  A  E  *  E  S  M  *  I  P  A  H  F  L  W  I  L  V  Y  I  C  L  K  C  N  I  Q  A  L  V  </second_frame>
            <third_frame>   F  I  Y  F  F  *  K  K  K  H  N  F  H  A  K  Y  S  N  *  I  E  R  I  S  N  S  S  A  I  S  F  K  K  N  K  I  K  I  H  I  L  W  L  Q  L  L  L  Q  I  H  F  S  F  Q  L  H  L  I  Q  D  Y  H  S  K  I  Q  D  S  L  F  L  L  K  N  L  D  K  I  K  K  L  Q  P  I  L  A  T  P  S  T  L  I  S  :  H  E  H  I  F  W  I  V  F  W  K  A  K  G  K  G  S  W  N  G  V  C  C  W  C  N  W  A  S  W  Y  P  H  C  T  V  A  V  A  *  R  L  *  C  Q  S  W  S  F  *  P  W  C  C  T  R  A  S  S  S  S  R  *  L  Q   : G  N  L  *  R  *  V  K  T  S  E  C  S  C  I  I  I  S  R  C  R  I  D  C  K  G  N  R  K  C  *  Q  S  C  G  Y  Y  *  *  G  R  G  R  S  C  D  *  S  H  H  N  R  C  C  T  S  Y  R  S  S  T  I  S  W  R  W  T  C  G  H  S  L  *  *  I  F  S  S  R  L  Y  I  Q  C  A  R  R  N  Y  I  I  L  Q  Q  S  V  L  K  I  S  T  V  D  D  S  R  V  S  A  E  D  S  R  D  R  P  K  L  Y  T  H  K  N  Q  I  N  *  R  F  L  P  *  E  L  I  Q  N  R  R  F  S  *  R  K  C  *  C  *  R  L  *   : S  G  E  V  S  D  S  *  A  R  C  G  C  F  L  Q  H  S  G  G  R  K  *   : G  C  R  S  L  C  *  S  I  S  T  A  K  D  C  G  *  T  F  *  :  R  H  S  *  G  W  S  E  K  G  L  C  R  S  P  *  K  I  E  S  *  G  R  S  S  R  S  C  *  S  I  Q  E  A  G  T  R  S  K  E  A  *  K  E  R  S  K  G  C  C  Y  H  R  K  G  T  *  R  E  G  V  I  T  F  R  S  F  C  *  K  S  T  R  Q  S  K  R  L  *  Y  R  I  F  I  *  K  T  Q  L  T  A  Q  I  S  C  *  K  G  *  R  G  I  R  R  S  S  C  Y  R  *  G  T  G  Q  G  *  K  F  A  C  S  E  S  S  G  E  N  S  S  K  E  T  I  C  F  E  N  E  E  G  G  S  E  T  S  *  T  N  R  G  C  F  N  R  E  E  E  D  F  W  W  T  V  S  T  R  N  H  L  C  *  *  L  R  *  M  N  K  R  K  P  K  Y  *  F  S  I  Y  H  F  S  L  I  M  R  L  Q  T  M  V  *  L  R  L  S  E  K  A  C  K  S  L  H  I  F  C  G  S  *  C  I  F  A  S  N  A  T  F  R  H  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0158P14.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44532" stop="44536"/>
                    <exon start="45372" stop="45567"/>
                    <exon start="45878" stop="46330"/>
                    <exon start="46500" stop="46568"/>
                    <exon start="46827" stop="46885"/>
                    <exon start="47426" stop="47945"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1299</number_coding_nucleotides>
                  <number_encoded_amino_acids>433</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRTNTSSGLSFGRQRAKDPGTVFVAGATGQAGIRIAQLLLREGYSVRAGVSDLGAAQELARLAVSYKVISNDESKRLNAVASSFQDAESIAKAIGNANKVVVTISKGEDGPATEVTTTDAVQVIEAAQLAGVGHVAIVYDESSPVGSTYNVLDGITSFFNNLFSKSQPLTIAEFLQKIVETDLSYTLIKTRLTDDFSPESSYKIVVSAEGSADADAYKVGKSQIAKLVVDVFSNTAVAENKVVEVFADPSAPPKTVDELFSVIPEDGRRKAYAEALEKSKAEEEARGVAEASKRQEQEAKKLEKKEAKAAATIAKEPEEKASSPSVPSVESLLDKAKDFSTGFSFEKLSSQLKSAVEKANEESDAQVATVRGQAKAKNLPAQKAVVKTPPRKPFASKTKKEAPKPAKQTEVASTEKRKIFGGLFQQETIYVDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="51961" PGL_stop="49432"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51961" e_stop="51824"/>
            <exon e_start="51666" e_stop="51521"/>
            <exon e_start="50853" e_stop="50734"/>
            <exon e_start="50654" e_stop="50442"/>
            <exon e_start="50361" e_stop="50281"/>
            <exon e_start="49694" e_stop="49432"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.874" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.724" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.898" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51961" e_stop="51824" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.874" acc_prob="0.996">
            <gDNA_intron_boundary i_start="51823" i_stop="51667" i_length="157"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51666" e_stop="51521" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.975">
            <gDNA_intron_boundary i_start="51520" i_stop="50854" i_length="667"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50853" e_stop="50734" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.966" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50733" i_stop="50655" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="50654" e_stop="50442" e_length="213"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="0.724">
            <gDNA_intron_boundary i_start="50441" i_stop="50362" i_length="80"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="50361" e_stop="50281" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.898">
            <gDNA_intron_boundary i_start="50280" i_stop="49695" i_length="586"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="49694" e_stop="49432" e_length="263"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51961" stop="51824"/>
              <exon start="51666" stop="51521"/>
              <exon start="50853" stop="50734"/>
              <exon start="50654" stop="50442"/>
              <exon start="50361" stop="50281"/>
              <exon start="49694" stop="49495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51961" stop="51824"/>
              <exon start="51666" stop="51521"/>
              <exon start="50853" stop="50734"/>
              <exon start="50654" stop="50442"/>
              <exon start="50361" stop="50281"/>
              <exon start="49694" stop="49525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51961" stop="51824"/>
              <exon start="51666" stop="51521"/>
              <exon start="50853" stop="50734"/>
              <exon start="50654" stop="50454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51961" stop="51824"/>
              <exon start="51666" stop="51521"/>
              <exon start="50853" stop="50734"/>
              <exon start="50654" stop="50481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51961" stop="51824"/>
              <exon start="51666" stop="51521"/>
              <exon start="50853" stop="50734"/>
              <exon start="50654" stop="50491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51961" stop="51824"/>
              <exon start="51666" stop="51521"/>
              <exon start="50853" stop="50734"/>
              <exon start="50654" stop="50524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51961" stop="51824"/>
              <exon start="51666" stop="51521"/>
              <exon start="50853" stop="50734"/>
              <exon start="50654" stop="50601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51961" stop="51824"/>
              <exon start="51666" stop="51521"/>
              <exon start="50853" stop="50788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51961" stop="51824"/>
              <exon start="51666" stop="51614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51848" stop="51824"/>
              <exon start="51666" stop="51521"/>
              <exon start="50853" stop="50734"/>
              <exon start="50654" stop="50442"/>
              <exon start="50361" stop="50308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51848" stop="51824"/>
              <exon start="51666" stop="51521"/>
              <exon start="50853" stop="50734"/>
              <exon start="50654" stop="50594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50545" stop="50442"/>
              <exon start="50361" stop="50281"/>
              <exon start="49694" stop="49449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50534" stop="50442"/>
              <exon start="50361" stop="50281"/>
              <exon start="49694" stop="49449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50450" stop="50442"/>
              <exon start="50361" stop="50281"/>
              <exon start="49694" stop="49432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230327" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTTCTTGCAAATTTTAGTGATTTCCAATTGACTTCTCTTGGAGGTTTCATTGTTCATGAGAGCGCTTTCTTCTTGTCTGGAATCCCTTTCATCCTTTTCGAAAAGGCAGGGTGGTTTGGCAAGTACAAAATTCAG : AAAAAGACCAACACCCCGGAAGCTCAGCAGAAATGTATTACTCGTCTGCTGATATTTCATTTTTGTGTTAATCTTCCAATCCTGATAGTTACGTATCCGCTCTTTAAATTCATGGGGATGCGATCTACTCTTCCATTGCCATCCTG : GAAAGTGGTTTCAACCCAAGTTTTATTCTATTTCATCTTGGAGGATTTCGTATTTTACTGGGGACACAGAGTTTTACATACGAAATGGCTCTACAAGCACGTCCACAGTGTCCATCATGA : GTACGCGACACCATTTGGTTTGACATCTGAGTATGCTCACCCTGCTGAAATTCTCTTCCTTGGATTTGCTACGGTCATTGGTCCTGCAATCACCGGGCCACATTTGATAACATTATATCTATGGATCTCTCTTAGAATCCTCGAGACAGTCGAGGCACATTCTGGATACCATTTCCCCTGGAGCCCGTCAAACTTCTTGCCATTATATGGAGG : GTCTGATTTTCATGATTACCATCATCGACTGCTCTACACAAAGTCTGGAAACTACTCATCGACTTTCGTTTACATGGACTG : GTTATTTGGTACTGATAAGGGTTACAGAAAGTTGAAGATGCTGAAGGAGCAAGAGGGCAAAGCAATGTAAACAAGATGGGAAAGTAGAGGGGGAATAAAATTACATGTTTGTTTGAGTGTATAAGAAATAGTACTGAACAGATTCTATTAGTAATGATGAGATTAATAACGTAAGGATTAGTTATGTTGGCATTATTAATGCAAGAAGTAGTTATAACATGCACTACATAATTCTATCTACAAAAAATATTTGTTTACAAAAA</gDNA_template>
            <first_frame> F  L  L  A  N  F  S  D  F  Q  L  T  S  L  G  G  F  I  V  H  E  S  A  F  F  L  S  G  I  P  F  I  L  F  E  K  A  G  W  F  G  K  Y  K  I  Q  :  K  K  T  N  T  P  E  A  Q  Q  K  C  I  T  R  L  L  I  F  H  F  C  V  N  L  P  I  L  I  V  T  Y  P  L  F  K  F  M  G  M  R  S  T  L  P  L  P  S  W :   K  V  V  S  T  Q  V  L  F  Y  F  I  L  E  D  F  V  F  Y  W  G  H  R  V  L  H  T  K  W  L  Y  K  H  V  H  S  V  H  H  E :   Y  A  T  P  F  G  L  T  S  E  Y  A  H  P  A  E  I  L  F  L  G  F  A  T  V  I  G  P  A  I  T  G  P  H  L  I  T  L  Y  L  W  I  S  L  R  I  L  E  T  V  E  A  H  S  G  Y  H  F  P  W  S  P  S  N  F  L  P  L  Y  G  G :   S  D  F  H  D  Y  H  H  R  L  L  Y  T  K  S  G  N  Y  S  S  T  F  V  Y  M  D  W :   L  F  G  T  D  K  G  Y  R  K  L  K  M  L  K  E  Q  E  G  K  A  M  *  T  R  W  E  S  R  G  G  I  K  L  H  V  C  L  S  V  *  E  I  V  L  N  R  F  Y  *  *  *  *  D  *  *  R  K  D  *  L  C  W  H  Y  *  C  K  K  *  L  *  H  A  L  H  N  S  I  Y  K  K  Y  L  F  T  K  </first_frame>
            <second_frame>  F  F  L  Q  I  L  V  I  S  N  *  L  L  L  E  V  S  L  F  M  R  A  L  S  S  C  L  E  S  L  S  S  F  S  K  R  Q  G  G  L  A  S  T  K  F  R :   K  R  P  T  P  R  K  L  S  R  N  V  L  L  V  C  *  Y  F  I  F  V  L  I  F  Q  S  *  *  L  R  I  R  S  L  N  S  W  G  C  D  L  L  F  H  C  H  P   : G  K  W  F  Q  P  K  F  Y  S  I  S  S  W  R  I  S  Y  F  T  G  D  T  E  F  Y  I  R  N  G  S  T  S  T  S  T  V  S  I  M   : S  T  R  H  H  L  V  *  H  L  S  M  L  T  L  L  K  F  S  S  L  D  L  L  R  S  L  V  L  Q  S  P  G  H  I  *  *  H  Y  I  Y  G  S  L  L  E  S  S  R  Q  S  R  H  I  L  D  T  I  S  P  G  A  R  Q  T  S  C  H  Y  M  E   : G  L  I  F  M  I  T  I  I  D  C  S  T  Q  S  L  E  T  T  H  R  L  S  F  T  W  T   : G  Y  L  V  L  I  R  V  T  E  S  *  R  C  *  R  S  K  R  A  K  Q  C  K  Q  D  G  K  V  E  G  E  *  N  Y  M  F  V  *  V  Y  K  K  *  Y  *  T  D  S  I  S  N  D  E  I  N  N  V  R  I  S  Y  V  G  I  I  N  A  R  S  S  Y  N  M  H  Y  I  I  L  S  T  K  N  I  C  L  Q  K </second_frame>
            <third_frame>   S  S  C  K  F  *  *  F  P  I  D  F  S  W  R  F  H  C  S  *  E  R  F  L  L  V  W  N  P  F  H  P  F  R  K  G  R  V  V  W  Q  V  Q  N  S   : E  K  D  Q  H  P  G  S  S  A  E  M  Y  Y  S  S  A  D  I  S  F  L  C  *  S  S  N  P  D  S  Y  V  S  A  L  *  I  H  G  D  A  I  Y  S  S  I  A  I  L  :  E  S  G  F  N  P  S  F  I  L  F  H  L  G  G  F  R  I  L  L  G  T  Q  S  F  T  Y  E  M  A  L  Q  A  R  P  Q  C  P  S  *  :  V  R  D  T  I  W  F  D  I  *  V  C  S  P  C  *  N  S  L  P  W  I  C  Y  G  H  W  S  C  N  H  R  A  T  F  D  N  I  I  S  M  D  L  S  *  N  P  R  D  S  R  G  T  F  W  I  P  F  P  L  E  P  V  K  L  L  A  I  I  W  R  :  V  *  F  S  *  L  P  S  S  T  A  L  H  K  V  W  K  L  L  I  D  F  R  L  H  G  L  :  V  I  W  Y  *  *  G  L  Q  K  V  E  D  A  E  G  A  R  G  Q  S  N  V  N  K  M  G  K  *  R  G  N  K  I  T  C  L  F  E  C  I  R  N  S  T  E  Q  I  L  L  V  M  M  R  L  I  T  *  G  L  V  M  L  A  L  L  M  Q  E  V  V  I  T  C  T  T  *  F  Y  L  Q  K  I  F  V  Y  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0158P14.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51961" stop="51824"/>
                    <exon start="51666" stop="51521"/>
                    <exon start="50853" stop="50734"/>
                    <exon start="50654" stop="50442"/>
                    <exon start="50361" stop="50281"/>
                    <exon start="49694" stop="49625"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLLANFSDFQLTSLGGFIVHESAFFLSGIPFILFEKAGWFGKYKIQKKTNTPEAQQKCITRLLIFHFCVNLPILIVTYPLFKFMGMRSTLPLPSWKVVSTQVLFYFILEDFVFYWGHRVLHTKWLYKHVHSVHHEYATPFGLTSEYAHPAEILFLGFATVIGPAITGPHLITLYLWISLRILETVEAHSGYHFPWSPSNFLPLYGGSDFHDYHHRLLYTKSGNYSSTFVYMDWLFGTDKGYRKLKMLKEQEGKAM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="50863" e_stop="50734"/>
            <exon e_start="50654" e_stop="50442"/>
            <exon e_start="50361" e_stop="50281"/>
            <exon e_start="49694" e_stop="49432"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.724" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.898" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50863" e_stop="50734" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50733" i_stop="50655" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50654" e_stop="50442" e_length="213"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.724">
            <gDNA_intron_boundary i_start="50441" i_stop="50362" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50361" e_stop="50281" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.898">
            <gDNA_intron_boundary i_start="50280" i_stop="49695" i_length="586"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="49694" e_stop="49432" e_length="263"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50863" stop="50734"/>
              <exon start="50654" stop="50442"/>
              <exon start="50361" stop="50281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50863" stop="50734"/>
              <exon start="50654" stop="50442"/>
              <exon start="50361" stop="50282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50545" stop="50442"/>
              <exon start="50361" stop="50281"/>
              <exon start="49694" stop="49449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50534" stop="50442"/>
              <exon start="50361" stop="50281"/>
              <exon start="49694" stop="49449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50450" stop="50442"/>
              <exon start="50361" stop="50281"/>
              <exon start="49694" stop="49432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230327" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCTGCAGGAAAGTGGTTTCAACCCAAGTTTTATTCTATTTCATCTTGGAGGATTTCGTATTTTACTGGGGACACAGAGTTTTACATACGAAATGGCTCTACAAGCACGTCCACAGTGTCCATCATGA : GTACGCGACACCATTTGGTTTGACATCTGAGTATGCTCACCCTGCTGAAATTCTCTTCCTTGGATTTGCTACGGTCATTGGTCCTGCAATCACCGGGCCACATTTGATAACATTATATCTATGGATCTCTCTTAGAATCCTCGAGACAGTCGAGGCACATTCTGGATACCATTTCCCCTGGAGCCCGTCAAACTTCTTGCCATTATATGGAGG : GTCTGATTTTCATGATTACCATCATCGACTGCTCTACACAAAGTCTGGAAACTACTCATCGACTTTCGTTTACATGGACTG : GTTATTTGGTACTGATAAGGGTTACAGAAAGTTGAAGATGCTGAAGGAGCAAGAGGGCAAAGCAATGTAAACAAGATGGGAAAGTAGAGGGGGAATAAAATTACATGTTTGTTTGAGTGTATAAGAAATAGTACTGAACAGATTCTATTAGTAATGATGAGATTAATAACGTAAGGATTAGTTATGTTGGCATTATTAATGCAAGAAGTAGTTATAACATGCACTACATAATTCTATCTACAAAAAATATTTGTTTACAAAAA</gDNA_template>
            <first_frame> F  S  A  G  K  W  F  Q  P  K  F  Y  S  I  S  S  W  R  I  S  Y  F  T  G  D  T  E  F  Y  I  R  N  G  S  T  S  T  S  T  V  S  I  M   : S  T  R  H  H  L  V  *  H  L  S  M  L  T  L  L  K  F  S  S  L  D  L  L  R  S  L  V  L  Q  S  P  G  H  I  *  *  H  Y  I  Y  G  S  L  L  E  S  S  R  Q  S  R  H  I  L  D  T  I  S  P  G  A  R  Q  T  S  C  H  Y  M  E   : G  L  I  F  M  I  T  I  I  D  C  S  T  Q  S  L  E  T  T  H  R  L  S  F  T  W  T   : G  Y  L  V  L  I  R  V  T  E  S  *  R  C  *  R  S  K  R  A  K  Q  C  K  Q  D  G  K  V  E  G  E  *  N  Y  M  F  V  *  V  Y  K  K  *  Y  *  T  D  S  I  S  N  D  E  I  N  N  V  R  I  S  Y  V  G  I  I  N  A  R  S  S  Y  N  M  H  Y  I  I  L  S  T  K  N  I  C  L  Q  K </first_frame>
            <second_frame>  F  L  Q  E  S  G  F  N  P  S  F  I  L  F  H  L  G  G  F  R  I  L  L  G  T  Q  S  F  T  Y  E  M  A  L  Q  A  R  P  Q  C  P  S  *  :  V  R  D  T  I  W  F  D  I  *  V  C  S  P  C  *  N  S  L  P  W  I  C  Y  G  H  W  S  C  N  H  R  A  T  F  D  N  I  I  S  M  D  L  S  *  N  P  R  D  S  R  G  T  F  W  I  P  F  P  L  E  P  V  K  L  L  A  I  I  W  R  :  V  *  F  S  *  L  P  S  S  T  A  L  H  K  V  W  K  L  L  I  D  F  R  L  H  G  L  :  V  I  W  Y  *  *  G  L  Q  K  V  E  D  A  E  G  A  R  G  Q  S  N  V  N  K  M  G  K  *  R  G  N  K  I  T  C  L  F  E  C  I  R  N  S  T  E  Q  I  L  L  V  M  M  R  L  I  T  *  G  L  V  M  L  A  L  L  M  Q  E  V  V  I  T  C  T  T  *  F  Y  L  Q  K  I  F  V  Y  K   </second_frame>
            <third_frame>   F  C  R  K  V  V  S  T  Q  V  L  F  Y  F  I  L  E  D  F  V  F  Y  W  G  H  R  V  L  H  T  K  W  L  Y  K  H  V  H  S  V  H  H  E :   Y  A  T  P  F  G  L  T  S  E  Y  A  H  P  A  E  I  L  F  L  G  F  A  T  V  I  G  P  A  I  T  G  P  H  L  I  T  L  Y  L  W  I  S  L  R  I  L  E  T  V  E  A  H  S  G  Y  H  F  P  W  S  P  S  N  F  L  P  L  Y  G  G :   S  D  F  H  D  Y  H  H  R  L  L  Y  T  K  S  G  N  Y  S  S  T  F  V  Y  M  D  W :   L  F  G  T  D  K  G  Y  R  K  L  K  M  L  K  E  Q  E  G  K  A  M  *  T  R  W  E  S  R  G  G  I  K  L  H  V  C  L  S  V  *  E  I  V  L  N  R  F  Y  *  *  *  *  D  *  *  R  K  D  *  L  C  W  H  Y  *  C  K  K  *  L  *  H  A  L  H  N  S  I  Y  K  K  Y  L  F  T  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0158P14.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50861" stop="50734"/>
                    <exon start="50654" stop="50442"/>
                    <exon start="50361" stop="50281"/>
                    <exon start="49694" stop="49625"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCRKVVSTQVLFYFILEDFVFYWGHRVLHTKWLYKHVHSVHHEYATPFGLTSEYAHPAEILFLGFATVIGPAITGPHLITLYLWISLRILETVEAHSGYHFPWSPSNFLPLYGGSDFHDYHHRLLYTKSGNYSSTFVYMDWLFGTDKGYRKLKMLKEQEGKAM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="51626" PGL_stop="51962"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51626" e_stop="51962"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="51626" e_stop="51962" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51626" stop="51962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279247" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAATACATTTCTGCTGAGCTTCCGGGGTGTTGGTCTTTTTCTGCAACACAAATAGGTCGACAGTGCAACAAAATGAAAATTCATGTGAATAATGATAGGAATGAACTACGTACTCGTGCACGAGTACTAGTACTAGTCTTGAGTCGAATATCGTTGATGTTTGGGATCATTTTGAACAAGAAACATCATTCCATTACCTGAATTTTGTACTTGCCAAACCACCCTGCCTTTTCGAAAAGGATGAAAGGGATTCCAGACAAGAAGAAAGCGCTCTCATGAACAATGAAACCTCCAAGAGAAGTCAATTGGAAATCACTAAAATTTGCAAGAAGAAAC</gDNA_template>
            <first_frame> V  I  H  F  C  *  A  S  G  V  L  V  F  F  C  N  T  N  R  S  T  V  Q  Q  N  E  N  S  C  E  *  *  *  E  *  T  T  Y  S  C  T  S  T  S  T  S  L  E  S  N  I  V  D  V  W  D  H  F  E  Q  E  T  S  F  H  Y  L  N  F  V  L  A  K  P  P  C  L  F  E  K  D  E  R  D  S  R  Q  E  E  S  A  L  M  N  N  E  T  S  K  R  S  Q  L  E  I  T  K  I  C  K  K  K  </first_frame>
            <second_frame>  *  Y  I  S  A  E  L  P  G  C  W  S  F  S  A  T  Q  I  G  R  Q  C  N  K  M  K  I  H  V  N  N  D  R  N  E  L  R  T  R  A  R  V  L  V  L  V  L  S  R  I  S  L  M  F  G  I  I  L  N  K  K  H  H  S  I  T  *  I  L  Y  L  P  N  H  P  A  F  S  K  R  M  K  G  I  P  D  K  K  K  A  L  S  *  T  M  K  P  P  R  E  V  N  W  K  S  L  K  F  A  R  R  N </second_frame>
            <third_frame>   N  T  F  L  L  S  F  R  G  V  G  L  F  L  Q  H  K  *  V  D  S  A  T  K  *  K  F  M  *  I  M  I  G  M  N  Y  V  L  V  H  E  Y  *  Y  *  S  *  V  E  Y  R  *  C  L  G  S  F  *  T  R  N  I  I  P  L  P  E  F  C  T  C  Q  T  T  L  P  F  R  K  G  *  K  G  F  Q  T  R  R  K  R  S  H  E  Q  *  N  L  Q  E  K  S  I  G  N  H  *  N  L  Q  E  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0158P14.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51731" stop="51961"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTYSCTSTSTSLESNIVDVWDHFEQETSFHYLNFVLAKPPCLFEKDERDSRQEESALMNNETSKRSQLEITKICKKK</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0158P14.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51630" stop="51827"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YISAELPGCWSFSATQIGRQCNKMKIHVNNDRNELRTRARVLVLVLSRISLMFGIILNKKHHSIT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="65261" PGL_stop="62541"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65261" e_stop="65109"/>
            <exon e_start="63542" e_stop="63335"/>
            <exon e_start="62588" e_stop="62541"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.974"/>
          <exon-intron don_prob="0.900" acc_prob="0.882" e_score="0.966"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="65261" e_stop="65109" e_length="153"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="65108" i_stop="63543" i_length="1566"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="63542" e_stop="63335" e_length="208"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.882">
            <gDNA_intron_boundary i_start="63334" i_stop="62589" i_length="746"/>
          </intron>
          <exon e_serial="3" e_score="0.979">
            <gDNA_exon_boundary e_start="62588" e_stop="62541" e_length="48"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65261" stop="65109"/>
              <exon start="63542" stop="63335"/>
              <exon start="62588" stop="62541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365266" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCGCCTTCTGTGAAGTTCAAATTTCAAATTCCAAAACCTAGAAATTGGTCATGGATGAACAAGTACAGCTCAATCCGATGTGCCGGAAAAGTCAATCGATGGTCCCTTGATGGCATGAATGCCCTTGTCACTGGTGGTACTAGAGGCATTGG : GCATGCGATAGTGGAGGAATTGTGTGGACTGGGAGCCACCGTGCATACGTGTGCCCGTAATGAAGATGAGCTTGAAATTTGTTTGAGGAGCTGGAAAGATGAGGGCTTTACAGTTTCTGGTTCCTTATGTGATGTGTCTTCTCAAGTTGATCGCCAAAAGTTAATGGAGGTTGTTTCGTCTACATTCAATGGGAAGCTCGACATTCTT : ATAAACAACGTGGGGACCAATATTCGCAAAGCTATGGTGGATTTTACT</gDNA_template>
            <first_frame> F  A  F  C  E  V  Q  I  S  N  S  K  T  *  K  L  V  M  D  E  Q  V  Q  L  N  P  M  C  R  K  S  Q  S  M  V  P  *  W  H  E  C  P  C  H  W  W  Y  *  R  H  W  :  A  C  D  S  G  G  I  V  W  T  G  S  H  R  A  Y  V  C  P  *  *  R  *  A  *  N  L  F  E  E  L  E  R  *  G  L  Y  S  F  W  F  L  M  *  C  V  F  S  S  *  S  P  K  V  N  G  G  C  F  V  Y  I  Q  W  E  A  R  H  S   : Y  K  Q  R  G  D  Q  Y  S  Q  S  Y  G  G  F  Y  </first_frame>
            <second_frame>  S  P  S  V  K  F  K  F  Q  I  P  K  P  R  N  W  S  W  M  N  K  Y  S  S  I  R  C  A  G  K  V  N  R  W  S  L  D  G  M  N  A  L  V  T  G  G  T  R  G  I  G :   H  A  I  V  E  E  L  C  G  L  G  A  T  V  H  T  C  A  R  N  E  D  E  L  E  I  C  L  R  S  W  K  D  E  G  F  T  V  S  G  S  L  C  D  V  S  S  Q  V  D  R  Q  K  L  M  E  V  V  S  S  T  F  N  G  K  L  D  I  L  :  I  N  N  V  G  T  N  I  R  K  A  M  V  D  F  T </second_frame>
            <third_frame>   R  L  L  *  S  S  N  F  K  F  Q  N  L  E  I  G  H  G  *  T  S  T  A  Q  S  D  V  P  E  K  S  I  D  G  P  L  M  A  *  M  P  L  S  L  V  V  L  E  A  L   : G  M  R  *  W  R  N  C  V  D  W  E  P  P  C  I  R  V  P  V  M  K  M  S  L  K  F  V  *  G  A  G  K  M  R  A  L  Q  F  L  V  P  Y  V  M  C  L  L  K  L  I  A  K  S  *  W  R  L  F  R  L  H  S  M  G  S  S  T  F  L :   *  T  T  W  G  P  I  F  A  K  L  W  W  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0158P14.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65260" stop="65109"/>
                    <exon start="63542" stop="63335"/>
                    <exon start="62588" stop="62541"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPSVKFKFQIPKPRNWSWMNKYSSIRCAGKVNRWSLDGMNALVTGGTRGIGHAIVEELCGLGATVHTCARNEDELEICLRSWKDEGFTVSGSLCDVSSQVDRQKLMEVVSSTFNGKLDILINNVGTNIRKAMVDFT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="67919" PGL_stop="67553"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67919" e_stop="67553"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67919" e_stop="67553" e_length="367"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67919" stop="67553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233534" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGGAGGGATTTCGAAAGTGTACAAATGAACATACTCTTTACATAAAAAGAGAATGTGTAGGGGTCTTAATGGTGTGTTTATATGTGGATGACTTAATTTATACCGGAAGTAATATGTCTATGATTAAAAACTTTAAGAAGTCCATGATGGTTGAGTTTGACACGTCAGATTTGAGGCATGGTGCATTATTTCCTTGGTTTAGAAGTGAATCAATCCGCTGATGGTATTTTTGTTTCTCAAAAGAAATATGTGCAAGATATTCTGGACAGATTCCAGATGAAAAATAACAACACTGTGAGCACACCAATGGAGAAGGGTCCGAAGCTCGTCAAAGAACCTGAAGGGAGAAAAGTGGACAACATTTTA</gDNA_template>
            <first_frame> K  E  G  F  R  K  C  T  N  E  H  T  L  Y  I  K  R  E  C  V  G  V  L  M  V  C  L  Y  V  D  D  L  I  Y  T  G  S  N  M  S  M  I  K  N  F  K  K  S  M  M  V  E  F  D  T  S  D  L  R  H  G  A  L  F  P  W  F  R  S  E  S  I  R  *  W  Y  F  C  F  S  K  E  I  C  A  R  Y  S  G  Q  I  P  D  E  K  *  Q  H  C  E  H  T  N  G  E  G  S  E  A  R  Q  R  T  *  R  E  K  S  G  Q  H  F  </first_frame>
            <second_frame>  R  R  D  F  E  S  V  Q  M  N  I  L  F  T  *  K  E  N  V  *  G  S  *  W  C  V  Y  M  W  M  T  *  F  I  P  E  V  I  C  L  *  L  K  T  L  R  S  P  *  W  L  S  L  T  R  Q  I  *  G  M  V  H  Y  F  L  G  L  E  V  N  Q  S  A  D  G  I  F  V  S  Q  K  K  Y  V  Q  D  I  L  D  R  F  Q  M  K  N  N  N  T  V  S  T  P  M  E  K  G  P  K  L  V  K  E  P  E  G  R  K  V  D  N  I  L </second_frame>
            <third_frame>   G  G  I  S  K  V  Y  K  *  T  Y  S  L  H  K  K  R  M  C  R  G  L  N  G  V  F  I  C  G  *  L  N  L  Y  R  K  *  Y  V  Y  D  *  K  L  *  E  V  H  D  G  *  V  *  H  V  R  F  E  A  W  C  I  I  S  L  V  *  K  *  I  N  P  L  M  V  F  L  F  L  K  R  N  M  C  K  I  F  W  T  D  S  R  *  K  I  T  T  L  *  A  H  Q  W  R  R  V  R  S  S  S  K  N  L  K  G  E  K  W  T  T  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0158P14.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67919" stop="67698"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEGFRKCTNEHTLYIKRECVGVLMVCLYVDDLIYTGSNMSMIKNFKKSMMVEFDTSDLRHGALFPWFRSESIR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0158P14.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67744" stop="67553"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMVHYFLGLEVNQSADGIFVSQKKYVQDILDRFQMKNNNTVSTPMEKGPKLVKEPEGRKVDNIL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="82551" PGL_stop="81866"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82551" e_stop="82466"/>
            <exon e_start="82388" e_stop="81866"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.953"/>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="82551" e_stop="82466" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="82465" i_stop="82389" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="0.919">
            <gDNA_exon_boundary e_start="82388" e_stop="81866" e_length="523"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82551" stop="82466"/>
              <exon start="82388" stop="81957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82101" stop="81866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAATGAAAGTAGTGAGATTAGGGGATCGGGTGCCAC : GTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCAACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGGTAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAATATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATTTTGAAAGATGTTAATATGTTCAATCTAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGCAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAACATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTTGTTATTTGTG</gDNA_template>
            <first_frame> H  N  L  L  C  *  *  *  C  L  G  I  K  E  G  L  M  N  E  S  S  E  I  R  G  S  G  A  T :   F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  V  E  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  Y  M  R  I  G  V  S  R  S  D  T  R  I  V  Y  *  G  A  E  C  H  V  P  T  R  G  E  *  R  *  *  I  L  K  D  V  N  M  F  N  L  M  N  L  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  H  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  L  L  F  V </first_frame>
            <second_frame>  I  I  Y  F  V  N  D  D  A  L  V  *  K  K  A  *  *  M  K  V  V  R  L  G  D  R  V  P   : R  S  G  T  R  I  E  Y  G  S  G  V  T  F  Q  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  N  I  *  G  S  E  C  H  V  P  T  P  G  *  Y  I  E  E  R  S  V  T  Y  R  H  E  G  N  K  D  N  E  F  *  K  M  L  I  C  S  I  *  *  T  *  F  P  N  E  Y  D  E  E  A  *  V  L  I  D  V  L  G  V  A  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  C  Y  L   </second_frame>
            <third_frame>   *  S  T  L  L  M  M  M  P  W  Y  K  R  R  L  D  E  *  K  *  *  D  *  G  I  G  C  H  :  V  P  V  P  G  *  N  M  D  R  V  S  R  S  N  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  G  R  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  I  Y  E  D  R  S  V  T  F  R  H  Q  D  S  I  L  R  S  G  V  S  R  T  D  T  R  G  I  K  I  M  N  F  E  R  C  *  Y  V  Q  S  N  E  P  N  S  Q  M  S  M  M  R  R  R  E  S  S  L  M  C  L  V  L  Q  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  T  Y  T  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  F  V  I  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0158P14.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="94120" PGL_stop="92272"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94120" e_stop="92272"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="94120" e_stop="92272" e_length="1849"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94120" stop="93643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94118" stop="93501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93996" stop="93385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93993" stop="93634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93988" stop="93412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93984" stop="93384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93978" stop="93409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93959" stop="93171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93940" stop="93304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93940" stop="93412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93935" stop="93679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93879" stop="93411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93869" stop="93132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93839" stop="93154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93806" stop="93326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93764" stop="93037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93742" stop="93313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93643" stop="92782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93642" stop="93120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93624" stop="93114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93600" stop="93073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93583" stop="92865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93583" stop="92871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93447" stop="92805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93410" stop="92983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93396" stop="92779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93395" stop="92751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93278" stop="92915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93131" stop="92591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93105" stop="92479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93047" stop="92533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93046" stop="92489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92959" stop="92539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92944" stop="92302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92776" stop="92272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92776" stop="92275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92547" stop="92325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389452" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTAAATATAAAATAATTAATTAACGATGAAATAGTATTTACCGCTTTACTAACAGGCTCCCACGCGTCTTCGTGTTTATAAACTCTCTTTTTTCTCCTTTCTTCTTTACCTTTCACGTTCTTCAACGCTACCCCCATTTTCTTCTCTCTGTGCTTTTTCTTTTTTTCTCTTAGGAAACCTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCGATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACGAGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTTCCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGAGCAGTCGACTAGAAGAAGAAGACAATAATGTCGTTCTTTAAATTATTACCTGTTGAGTGGGAAGGGAGCACTAAAAAAAGAGAAAGTTCGGTTCTAGAGCAGTCGACTAGAAGTAGAAGATTGATGGCTAAGAGAGCGGCCTATATGGCATAGAGAAAAGATGCCATTTTGTTGGGAATATGTAAATAGAGAAGGCTTTGATATGAAATTCAATACATTTTTAGTGTCATTTTGTTGAATTTGTAGCAGTAATTATAAGTAATAGAAAGACCATTGTTTTTTTTTATA</gDNA_template>
            <first_frame> I  *  I  *  N  N  *  L  T  M  K  *  Y  L  P  L  Y  *  Q  A  P  T  R  L  R  V  Y  K  L  S  F  F  S  F  L  L  Y  L  S  R  S  S  T  L  P  P  F  S  S  L  C  A  F  S  F  F  L  L  G  N  L  F  Y  I  L  R  R  A  K  S  E  H  N  L  G  V  L  S  Y  W  I  *  P  G  L  L  G  *  V  L  T  D  L  R  R  L  Q  M  S  S  Y  W  C  Y  R  C  T  R  F  V  R  I  S  V  G  N  D  V  V  C  P  H  C  D  S  G  F  I  E  V  A  E  G  N  I  G  S  P  E  S  R  R  R  F  P  M  W  N  E  R  P  E  S  D  R  S  V  N  M  G  S  R  R  S  R  R  N  R  G  D  R  S  P  F  N  P  V  I  V  L  R  S  P  S  E  A  P  G  E  D  E  A  A  A  A  A  E  E  R  S  Y  E  L  Y  Y  D  D  G  E  G  S  G  L  R  P  L  P  P  T  M  S  E  F  L  M  G  S  G  F  D  R  L  L  D  Q  L  A  Q  I  E  V  N  G  F  G  R  P  E  N  P  P  A  S  K  S  A  I  E  S  M  P  I  I  Q  I  A  S  N  H  V  N  S  E  T  H  C  A  V  C  K  E  A  F  D  L  G  S  E  A  R  E  M  P  C  K  H  I  Y  H  S  D  C  I  L  P  W  L  S  L  R  N  S  C  P  V  C  R  H  E  L  P  T  E  S  T  E  T  T  N  S  D  N  I  S  R  P  R  N  E  D  E  A  M  G  L  T  I  W  R  L  P  G  G  G  F  A  V  G  R  F  S  G  G  R  R  G  A  E  R  E  L  P  V  V  Y  T  E  M  D  G  G  F  N  N  G  V  P  R  R  I  A  W  R  S  R  R  S  N  T  G  R  N  G  N  G  I  S  R  I  F  N  N  F  T  S  F  F  R  R  L  T  P  S  S  Q  H  R  S  L  S  I  H  S  S  S  S  E  S  S  G  S  G  S  G  S  A  V  F  R  S  R  S  V  S  S  S  T  S  I  F  S  R  Y  L  R  R  S  R  R  N  W  V  P  E  E  R  N  G  V  T  R  W  *  L  L  S  R  K  T  P  I  F  N  Y  Y  F  Y  R  A  V  D  *  K  Q  K  T  I  T  P  D  A  K  C  K  A  M  C  D  W  *  S  S  R  L  E  E  E  D  N  N  V  V  L  *  I  I  T  C  *  V  G  R  E  H  *  K  K  R  K  F  G  S  R  A  V  D  *  K  *  K  I  D  G  *  E  S  G  L  Y  G  I  E  K  R  C  H  F  V  G  N  M  *  I  E  K  A  L  I  *  N  S  I  H  F  *  C  H  F  V  E  F  V  A  V  I  I  S  N  R  K  T  I  V  F  F  Y  </first_frame>
            <second_frame>  F  K  Y  K  I  I  N  *  R  *  N  S  I  Y  R  F  T  N  R  L  P  R  V  F  V  F  I  N  S  L  F  S  P  F  F  F  T  F  H  V  L  Q  R  Y  P  H  F  L  L  S  V  L  F  L  F  F  S  *  E  T  F  F  I  F  S  G  E  P  N  R  S  I  I  W  G  F  *  V  I  G  S  N  R  V  Y  W  V  E  F  *  L  I  S  G  D  C  R  C  L  R  T  G  V  I  G  V  Q  G  L  L  E  F  Q  L  E  T  M  L  F  V  L  T  V  I  V  D  L  *  K  L  L  R  E  I  L  G  R  R  N  L  A  G  G  F  P  C  G  T  N  G  Q  S  Q  I  G  V  *  T  W  V  L  D  G  A  G  V  I  G  V  I  D  L  R  L  I  R  L  L  F  F  V  V  H  L  K  H  L  G  R  M  K  L  L  Q  L  Q  R  S  G  V  M  S  F  I  M  M  M  V  K  V  Q  V  S  G  R  C  R  R  R  C  R  S  F  *  W  D  L  G  L  I  G  Y  L  I  S  *  H  R  S  R  *  T  V  L  V  A  R  K  I  H  R  R  R  N  Q  R  L  S  R  C  R  L  F  K  *  L  Q  I  T  *  I  P  R  P  I  A  L  F  V  K  K  L  S  I  *  D  L  K  L  E  K  C  P  V  N  T  S  T  I  P  I  V  S  S  H  G  Y  L  F  E  I  R  A  P  F  A  D  T  N  Y  Q  R  N  Q  L  K  L  Q  T  P  T  T  F  L  D  P  E  T  K  T  R  Q  W  D  *  Q  Y  G  D  F  R  E  V  G  S  P  *  E  D  F  P  V  E  E  E  E  L  R  E  S  F  Q  *  C  I  Q  K  W  T  V  D  L  T  M  G  Y  L  E  E  *  L  G  D  Q  E  E  A  T  Q  V  E  M  A  T  E  *  A  E  F  S  T  T  S  H  H  F  S  G  D  *  H  H  L  L  N  I  D  L  Y  P  Y  I  P  V  V  Q  N  H  P  V  L  V  L  D  L  L  Y  S  G  V  E  V  Y  L  Q  A  L  Q  Y  S  V  G  I  *  E  E  A  E  E  I  G  Y  L  K  N  V  M  E  *  Q  D  G  N  Y  L  V  G  K  R  Q  F  S  I  I  I  F  I  E  Q  S  T  R  S  R  R  R  *  P  P  M  P  S  V  R  Q  C  V  I  G  R  A  V  D  *  K  K  K  T  I  M  S  F  F  K  L  L  P  V  E  W  E  G  S  T  K  K  R  E  S  S  V  L  E  Q  S  T  R  S  R  R  L  M  A  K  R  A  A  Y  M  A  *  R  K  D  A  I  L  L  G  I  C  K  *  R  R  L  *  Y  E  I  Q  Y  I  F  S  V  I  L  L  N  L  *  Q  *  L  *  V  I  E  R  P  L  F  F  F  I </second_frame>
            <third_frame>   L  N  I  K  *  L  I  N  D  E  I  V  F  T  A  L  L  T  G  S  H  A  S  S  C  L  *  T  L  F  F  L  L  S  S  L  P  F  T  F  F  N  A  T  P  I  F  F  S  L  C  F  F  F  F  S  L  R  K  P  F  L  Y  S  P  A  S  Q  I  G  A  *  F  G  G  F  E  L  L  D  L  T  G  F  I  G  L  S  F  D  *  S  P  A  T  A  D  V  F  V  L  V  L  S  V  Y  K  V  C  *  N  F  S  W  K  R  C  C  L  S  S  L  *  *  W  I  Y  R  S  C  *  G  K  Y  W  V  A  G  I  S  P  E  V  S  H  V  E  R  T  A  R  V  R  S  E  C  E  H  G  F  S  T  E  Q  A  *  S  G  *  *  I  S  V  *  S  G  Y  C  S  S  *  S  I  *  S  T  W  G  G  *  S  C  C  S  C  R  G  A  E  L  *  A  L  L  *  *  W  *  R  F  R  S  Q  A  V  A  A  D  D  V  G  V  F  D  G  I  W  V  *  S  V  T  *  S  V  S  T  D  R  G  E  R  F  W  S  P  G  K  S  T  G  V  E  I  S  D  *  V  D  A  D  Y  S  N  S  F  K  S  R  K  F  R  D  P  L  R  C  L  *  R  S  F  R  F  R  I  *  S  S  R  N  A  L  *  T  H  L  P  F  R  L  Y  P  P  M  A  I  S  S  K  F  V  P  R  L  P  T  R  I  T  N  G  I  N  *  N  Y  K  L  R  Q  H  F  *  T  Q  K  R  R  R  G  N  G  I  D  N  M  E  T  S  G  R  W  V  R  R  R  K  I  F  R  W  K  K  R  S  *  E  R  A  S  S  S  V  Y  R  N  G  R  W  I  *  Q  W  G  T  *  K  N  S  L  E  I  K  K  K  Q  H  R  S  K  W  Q  R  N  K  P  N  F  Q  Q  L  H  I  I  F  P  A  I  N  T  I  F  S  T  S  I  S  I  H  T  F  Q  *  F  R  I  I  R  F  W  F  W  I  C  C  I  Q  E  S  K  C  I  F  K  H  F  N  I  Q  *  V  F  E  K  K  Q  K  K  L  G  T  *  R  T  *  W  S  N  K  M  V  I  T  *  S  E  N  A  N  F  Q  L  L  F  L  *  S  S  R  L  E  A  E  D  D  N  P  R  C  Q  V  *  G  N  V  *  L  V  E  Q  S  T  R  R  R  R  Q  *  C  R  S  L  N  Y  Y  L  L  S  G  K  G  A  L  K  K  E  K  V  R  F  *  S  S  R  L  E  V  E  D  *  W  L  R  E  R  P  I  W  H  R  E  K  M  P  F  C  W  E  Y  V  N  R  E  G  F  D  M  K  F  N  T  F  L  V  S  F  C  *  I  C  S  S  N  Y  K  *  *  K  D  H  C  F  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0158P14.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93856" stop="92672"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1182</number_coding_nucleotides>
                  <number_encoded_amino_acids>394</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLTDLRRLQMSSYWCYRCTRFVRISVGNDVVCPHCDSGFIEVAEGNIGSPESRRRFPMWNERPESDRSVNMGSRRSRRNRGDRSPFNPVIVLRSPSEAPGEDEAAAAAEERSYELYYDDGEGSGLRPLPPTMSEFLMGSGFDRLLDQLAQIEVNGFGRPENPPASKSAIESMPIIQIASNHVNSETHCAVCKEAFDLGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPTESTETTNSDNISRPRNEDEAMGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGVPRRIAWRSRRSNTGRNGNGISRIFNNFTSFFRRLTPSSQHRSLSIHSSSSESSGSGSGSAVFRSRSVSSSTSIFSRYLRRSRRNWVPEERNGVTRW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="94120" e_stop="93241"/>
            <exon e_start="92983" e_stop="92272"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.547" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="94120" e_stop="93241" e_length="880"/>
          </exon>
          <intron i_serial="1" don_prob="0.547" acc_prob="0.000">
            <gDNA_intron_boundary i_start="93240" i_stop="92984" i_length="257"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="92983" e_stop="92272" e_length="712"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94120" stop="93643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94118" stop="93501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93996" stop="93385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93993" stop="93634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93988" stop="93412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93984" stop="93384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93978" stop="93409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93940" stop="93304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93940" stop="93412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93935" stop="93679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93879" stop="93411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93806" stop="93326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93742" stop="93313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93618" stop="93241"/>
              <exon start="92983" stop="92670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92959" stop="92539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92944" stop="92302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92776" stop="92272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92776" stop="92275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92547" stop="92325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389452" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTAAATATAAAATAATTAATTAACGATGAAATAGTATTTACCGCTTTACTAACAGGCTCCCACGCGTCTTCGTGTTTATAAACTCTCTTTTTTCTCCTTTCTTCTTTACCTTTCACGTTCTTCAACGCTACCCCCATTTTCTTCTCTCTGTGCTTTTTCTTTTTTTCTCTTAGGAAACCTTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGATCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGTACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTCCTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTCGCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTTCTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCT : GGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAAGATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCGACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGAGCAGTCGACTAGAAGAAGAAGACAATAATGTCGTTCTTTAAATTATTACCTGTTGAGTGGGAAGGGAGCACTAAAAAAAGAGAAAGTTCGGTTCTAGAGCAGTCGACTAGAAGTAGAAGATTGATGGCTAAGAGAGCGGCCTATATGGCATAGAGAAAAGATGCCATTTTGTTGGGAATATGTAAATAGAGAAGGCTTTGATATGAAATTCAATACATTTTTAGTGTCATTTTGTTGAATTTGTAGCAGTAATTATAAGTAATAGAAAGACCATTGTTTTTTTTTATA</gDNA_template>
            <first_frame> I  *  I  *  N  N  *  L  T  M  K  *  Y  L  P  L  Y  *  Q  A  P  T  R  L  R  V  Y  K  L  S  F  F  S  F  L  L  Y  L  S  R  S  S  T  L  P  P  F  S  S  L  C  A  F  S  F  F  L  L  G  N  L  F  Y  I  L  R  R  A  K  S  E  H  N  L  G  V  L  S  Y  W  I  *  P  G  L  L  G  *  V  L  T  D  L  R  R  L  Q  M  S  S  Y  W  C  Y  R  C  T  R  F  V  R  I  S  V  G  N  D  V  V  C  P  H  C  D  S  G  F  I  E  V  A  E  G  N  I  G  S  P  E  S  R  R  R  F  P  M  W  N  E  R  P  E  S  D  R  S  V  N  M  G  S  R  R  S  R  R  N  R  G  D  R  S  P  F  N  P  V  I  V  L  R  S  P  S  E  A  P  G  E  D  E  A  A  A  A  A  E  E  R  S  Y  E  L  Y  Y  D  D  G  E  G  S  G  L  R  P  L  P  P  T  M  S  E  F  L  M  G  S  G  F  D  R  L  L  D  Q  L  A  Q  I  E  V  N  G  F  G  R  P  E  N  P  P  A  S  K  S  A  I  E  S  M  P  I  I  Q  I  A  S  N  H  V  N  S  E  T  H  C  A  V  C  K  E  A  F  D  L  G  S  E  A  R  E  M  P   : W  W  I  *  Q  W  G  T  *  K  N  S  L  E  I  K  K  K  Q  H  R  S  K  W  Q  R  N  K  P  N  F  Q  Q  L  H  I  I  F  P  A  I  N  T  I  F  S  T  S  I  S  I  H  T  F  Q  *  F  R  I  I  R  F  W  F  W  I  C  C  I  Q  E  S  K  C  I  F  K  H  F  N  I  Q  *  V  F  E  K  K  Q  K  K  L  G  T  *  R  T  *  W  S  N  K  M  V  I  T  *  S  E  N  A  N  F  Q  L  L  F  L  *  S  S  R  L  E  A  E  D  D  N  P  R  C  Q  V  *  G  N  V  *  L  V  E  Q  S  T  R  R  R  R  Q  *  C  R  S  L  N  Y  Y  L  L  S  G  K  G  A  L  K  K  E  K  V  R  F  *  S  S  R  L  E  V  E  D  *  W  L  R  E  R  P  I  W  H  R  E  K  M  P  F  C  W  E  Y  V  N  R  E  G  F  D  M  K  F  N  T  F  L  V  S  F  C  *  I  C  S  S  N  Y  K  *  *  K  D  H  C  F  F  L   </first_frame>
            <second_frame>  F  K  Y  K  I  I  N  *  R  *  N  S  I  Y  R  F  T  N  R  L  P  R  V  F  V  F  I  N  S  L  F  S  P  F  F  F  T  F  H  V  L  Q  R  Y  P  H  F  L  L  S  V  L  F  L  F  F  S  *  E  T  F  F  I  F  S  G  E  P  N  R  S  I  I  W  G  F  *  V  I  G  S  N  R  V  Y  W  V  E  F  *  L  I  S  G  D  C  R  C  L  R  T  G  V  I  G  V  Q  G  L  L  E  F  Q  L  E  T  M  L  F  V  L  T  V  I  V  D  L  *  K  L  L  R  E  I  L  G  R  R  N  L  A  G  G  F  P  C  G  T  N  G  Q  S  Q  I  G  V  *  T  W  V  L  D  G  A  G  V  I  G  V  I  D  L  R  L  I  R  L  L  F  F  V  V  H  L  K  H  L  G  R  M  K  L  L  Q  L  Q  R  S  G  V  M  S  F  I  M  M  M  V  K  V  Q  V  S  G  R  C  R  R  R  C  R  S  F  *  W  D  L  G  L  I  G  Y  L  I  S  *  H  R  S  R  *  T  V  L  V  A  R  K  I  H  R  R  R  N  Q  R  L  S  R  C  R  L  F  K  *  L  Q  I  T  *  I  P  R  P  I  A  L  F  V  K  K  L  S  I  *  D  L  K  L  E  K  C  P  :  G  G  F  N  N  G  V  P  R  R  I  A  W  R  S  R  R  S  N  T  G  R  N  G  N  G  I  S  R  I  F  N  N  F  T  S  F  F  R  R  L  T  P  S  S  Q  H  R  S  L  S  I  H  S  S  S  S  E  S  S  G  S  G  S  G  S  A  V  F  R  S  R  S  V  S  S  S  T  S  I  F  S  R  Y  L  R  R  S  R  R  N  W  V  P  E  E  R  N  G  V  T  R  W  *  L  L  S  R  K  T  P  I  F  N  Y  Y  F  Y  R  A  V  D  *  K  Q  K  T  I  T  P  D  A  K  C  K  A  M  C  D  W  *  S  S  R  L  E  E  E  D  N  N  V  V  L  *  I  I  T  C  *  V  G  R  E  H  *  K  K  R  K  F  G  S  R  A  V  D  *  K  *  K  I  D  G  *  E  S  G  L  Y  G  I  E  K  R  C  H  F  V  G  N  M  *  I  E  K  A  L  I  *  N  S  I  H  F  *  C  H  F  V  E  F  V  A  V  I  I  S  N  R  K  T  I  V  F  F  Y  </second_frame>
            <third_frame>   L  N  I  K  *  L  I  N  D  E  I  V  F  T  A  L  L  T  G  S  H  A  S  S  C  L  *  T  L  F  F  L  L  S  S  L  P  F  T  F  F  N  A  T  P  I  F  F  S  L  C  F  F  F  F  S  L  R  K  P  F  L  Y  S  P  A  S  Q  I  G  A  *  F  G  G  F  E  L  L  D  L  T  G  F  I  G  L  S  F  D  *  S  P  A  T  A  D  V  F  V  L  V  L  S  V  Y  K  V  C  *  N  F  S  W  K  R  C  C  L  S  S  L  *  *  W  I  Y  R  S  C  *  G  K  Y  W  V  A  G  I  S  P  E  V  S  H  V  E  R  T  A  R  V  R  S  E  C  E  H  G  F  S  T  E  Q  A  *  S  G  *  *  I  S  V  *  S  G  Y  C  S  S  *  S  I  *  S  T  W  G  G  *  S  C  C  S  C  R  G  A  E  L  *  A  L  L  *  *  W  *  R  F  R  S  Q  A  V  A  A  D  D  V  G  V  F  D  G  I  W  V  *  S  V  T  *  S  V  S  T  D  R  G  E  R  F  W  S  P  G  K  S  T  G  V  E  I  S  D  *  V  D  A  D  Y  S  N  S  F  K  S  R  K  F  R  D  P  L  R  C  L  *  R  S  F  R  F  R  I  *  S  S  R  N  A  L :   V  D  L  T  M  G  Y  L  E  E  *  L  G  D  Q  E  E  A  T  Q  V  E  M  A  T  E  *  A  E  F  S  T  T  S  H  H  F  S  G  D  *  H  H  L  L  N  I  D  L  Y  P  Y  I  P  V  V  Q  N  H  P  V  L  V  L  D  L  L  Y  S  G  V  E  V  Y  L  Q  A  L  Q  Y  S  V  G  I  *  E  E  A  E  E  I  G  Y  L  K  N  V  M  E  *  Q  D  G  N  Y  L  V  G  K  R  Q  F  S  I  I  I  F  I  E  Q  S  T  R  S  R  R  R  *  P  P  M  P  S  V  R  Q  C  V  I  G  R  A  V  D  *  K  K  K  T  I  M  S  F  F  K  L  L  P  V  E  W  E  G  S  T  K  K  R  E  S  S  V  L  E  Q  S  T  R  S  R  R  L  M  A  K  R  A  A  Y  M  A  *  R  K  D  A  I  L  L  G  I  C  K  *  R  R  L  *  Y  E  I  Q  Y  I  F  S  V  I  L  L  N  L  *  Q  *  L  *  V  I  E  R  P  L  F  F  F  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0158P14.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93856" stop="93241"/>
                    <exon start="92983" stop="92973"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLTDLRRLQMSSYWCYRCTRFVRISVGNDVVCPHCDSGFIEVAEGNIGSPESRRRFPMWNERPESDRSVNMGSRRSRRNRGDRSPFNPVIVLRSPSEAPGEDEAAAAAEERSYELYYDDGEGSGLRPLPPTMSEFLMGSGFDRLLDQLAQIEVNGFGRPENPPASKSAIESMPIIQIASNHVNSETHCAVCKEAFDLGSEAREMPWWI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="93306" PGL_stop="93965"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93306" e_stop="93965"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="93306" e_stop="93965" e_length="660"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93306" stop="93965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410135" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATTTACGTGATTTGAAGCTATTTGAATAATCGGCATCGACTCAATCGCTGATTTCGACGCCGGTGGATTTTCCGGGCGACCAAAACCGTTCACCTCGATCTGTGCTAACTGATCAAGTAACCGATCAAACCCAGATCCCATCAAAAACTCCGACATCGTCGGCGGCAACGGCCTGAGACCTGAACCTTCACCATCATCATAATAAAGCTCATAACTCCGCTCCTCTGCAGCTGCAGCAGCTTCATCCTCCCCAGGTGCTTCAGATGGACTACGAAGAACAATAACCGGATTAAACGGAGATCTATCACCCCGATTACGCCTGCTCCGTCGAGAACCCATGTTCACACTCCGATCTGACTCTGGCCGTTCGTTCCACATGGGAAACCTCCGGCGAGATTCCGGCGACCCAATATTTCCCTCAGCAACTTCTATAAATCCACTATCACAGTGAGGACAAACAACATCGTTTCCAACTGAAATTCTAACAAACCTTGTACACCGATAACACCAGTACGAAGACATCTGCAGTCGCCGGAGATCAGTCAAAACTCAACCCAATAAACCCGGTTAGATCCAATAACTCAAAACCCCCAAATTATGCTCCGATTTGGCTCGCCGGAGAATATAAAAAAGGTTTCCTAAGAGAAAAAAAGAAAAA</gDNA_template>
            <first_frame> E  F  T  *  F  E  A  I  *  I  I  G  I  D  S  I  A  D  F  D  A  G  G  F  S  G  R  P  K  P  F  T  S  I  C  A  N  *  S  S  N  R  S  N  P  D  P  I  K  N  S  D  I  V  G  G  N  G  L  R  P  E  P  S  P  S  S  *  *  S  S  *  L  R  S  S  A  A  A  A  A  S  S  S  P  G  A  S  D  G  L  R  R  T  I  T  G  L  N  G  D  L  S  P  R  L  R  L  L  R  R  E  P  M  F  T  L  R  S  D  S  G  R  S  F  H  M  G  N  L  R  R  D  S  G  D  P  I  F  P  S  A  T  S  I  N  P  L  S  Q  *  G  Q  T  T  S  F  P  T  E  I  L  T  N  L  V  H  R  *  H  Q  Y  E  D  I  C  S  R  R  R  S  V  K  T  Q  P  N  K  P  G  *  I  Q  *  L  K  T  P  K  L  C  S  D  L  A  R  R  R  I  *  K  R  F  P  K  R  K  K  E  K </first_frame>
            <second_frame>  N  L  R  D  L  K  L  F  E  *  S  A  S  T  Q  S  L  I  S  T  P  V  D  F  P  G  D  Q  N  R  S  P  R  S  V  L  T  D  Q  V  T  D  Q  T  Q  I  P  S  K  T  P  T  S  S  A  A  T  A  *  D  L  N  L  H  H  H  H  N  K  A  H  N  S  A  P  L  Q  L  Q  Q  L  H  P  P  Q  V  L  Q  M  D  Y  E  E  Q  *  P  D  *  T  E  I  Y  H  P  D  Y  A  C  S  V  E  N  P  C  S  H  S  D  L  T  L  A  V  R  S  T  W  E  T  S  G  E  I  P  A  T  Q  Y  F  P  Q  Q  L  L  *  I  H  Y  H  S  E  D  K  Q  H  R  F  Q  L  K  F  *  Q  T  L  Y  T  D  N  T  S  T  K  T  S  A  V  A  G  D  Q  S  K  L  N  P  I  N  P  V  R  S  N  N  S  K  P  P  N  Y  A  P  I  W  L  A  G  E  Y  K  K  G  F  L  R  E  K  K  K   </second_frame>
            <third_frame>   I  Y  V  I  *  S  Y  L  N  N  R  H  R  L  N  R  *  F  R  R  R  W  I  F  R  A  T  K  T  V  H  L  D  L  C  *  L  I  K  *  P  I  K  P  R  S  H  Q  K  L  R  H  R  R  R  Q  R  P  E  T  *  T  F  T  I  I  I  I  K  L  I  T  P  L  L  C  S  C  S  S  F  I  L  P  R  C  F  R  W  T  T  K  N  N  N  R  I  K  R  R  S  I  T  P  I  T  P  A  P  S  R  T  H  V  H  T  P  I  *  L  W  P  F  V  P  H  G  K  P  P  A  R  F  R  R  P  N  I  S  L  S  N  F  Y  K  S  T  I  T  V  R  T  N  N  I  V  S  N  *  N  S  N  K  P  C  T  P  I  T  P  V  R  R  H  L  Q  S  P  E  I  S  Q  N  S  T  Q  *  T  R  L  D  P  I  T  Q  N  P  Q  I  M  L  R  F  G  S  P  E  N  I  K  K  V  S  *  E  K  K  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0158P14.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93522" stop="93758"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRSSAAAAASSSPGASDGLRRTITGLNGDLSPRLRLLRREPMFTLRSDSGRSFHMGNLRRDSGDPIFPSATSINPLSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 259 chains have been computed
$ 
$ memory statistics:
$ 256736 bytes spliced alignments in total
$ 122 spliced alignments have been stored
$ 2104 bytes was the average size of a spliced alignment
$ 19552 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1955 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 284 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 14:27:18
-->
