<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 11:54:50"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E428265" ref_strand="+" ref_description="SGN-E428265 [STM-50-C11]">
      <seq>cagcatcaggaagatgctaaatttacaagatatggcatttgagcttacaaaaaaatctctggctaactatacaaactatctaagccagagctaatgagctagtaaaatcctgaagttgttctgcattaacagcaggatacaagttggtccaactaaacaaattttcaatgcaccgagtcttcaaaatgtctaaagcagttgactctccatcaaaacatctcttgttcctctctaaccaaatacaccaaaaaatacaagcaggtatcataatccagatcttcttgatggctttgtcaactttccattgcctccaactctcatatgcatccttaacagtgaggggtgtggtccaattgatgccagagagacaaaaaaacatgctccataattctgaggccagctcacaatgaagaagaaggtgtctgggggtttagcctcttttttgcacatatagcatctgtttgggaattggatttttcttttctttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22865" stop="23950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23164" g_stop="23650" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E428265" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E428265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23164" e_stop="23650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACCAAGAAGATGCAAGATTTACAA-ATATGGCATTTGAGCTTACAAAAAAATCTCTGGCTAACTATACAAACTATCTAAGCCAGAACTATTGAGTTAGTAAAATCCTGAAGTTGTTCTGCATTAACAGTAGGATACAAGTTGGACCAAATAAACAAATTTGCAATGCACCTAGTCTTCAAAATACCTAAGGCAGTTGATTCTCCATTGAAACATCTGTTGTTCCTCTCTAACCAAATACACCAAAAAACACAACCAGGTATCATAAT-CAAATCTTCTTGATAGCTTTGTCAACTTTCCATAGGCTCCAACTCTCATATGCATCCGTAACTGTGAGGGGTGTGGTCCAACTGATGCCAGAGAGACAAAACAA-ATACTCCATAATTCTAAGGCCACATCACAATGAAGAAGAAGGTGTCTGGGGGTTTCAGCCTCTTTTTTGCACATATAGCATCTGTTTGGGAACTGGATTTTTCTTTTCTTTAT</genome_strand>
        <mrna_strand>CAGCATCAGGAAGATGCTAAATTTACAAGATATGGCATTTGAGCTTACAAAAAAATCTCTGGCTAACTATACAAACTATCTAAGCCAGAGCTAATGAGCTAGTAAAATCCTGAAGTTGTTCTGCATTAACAGCAGGATACAAGTTGGTCCAACTAAACAAATTTTCAATGCACCGAGTCTTCAAAATGTCTAAAGCAGTTGACTCTCCATCAAAACATCTCTTGTTCCTCTCTAACCAAATACACCAAAAAATACAAGCAGGTATCATAATCCAGATCTTCTTGATGGCTTTGTCAACTTTCCATTGCCTCCAACTCTCATATGCATCCTTAACAGTGAGGGGTGTGGTCCAATTGATGCCAGAGAGACAAAAAAACATGCTCCATAATTCTGAGGCCAGCTCACAATGAAGAAGAAGGTGTCTGGGGGTTT-AGCCTCTTTTTTGCACATATAGCATCTGTTTGGGAATTGGATTTTTCTTTTCTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E426861" ref_strand="+" ref_description="SGN-E426861 [STM-47-E12]">
      <seq>gctaactatacaaactatctaagccagagttaatgagttagtaaaatcttgaagttgttctgcattaacagcaggatacaagttggtccaactaaacaaattttcagtgcacctagtcttcaaaatgcctaaagcagttgactctccatcaaaacatctcttgttcctctctaaccaaatacaccaaaaaatacaagcaggtatcataatccagatcttcttgatggctttgtcaactttccatagactccaactctcatatgcatccttaacagtgaggggtgtggtccaattgatgccagagagacaaaaaaacatgctccataattctgaggccacctcacaatgaagaagaaggtgtctgggggtttcagcctcttttttgcacatatagcatctgtttgggaaattggattttctttgtctttcatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22924" stop="23950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23224" g_stop="23654" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E426861" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23224" e_stop="23654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAACTATACAAACTATCTAAGCCAGAACTATTGAGTTAGTAAAATCCTGAAGTTGTTCTGCATTAACAGTAGGATACAAGTTGGACCAAATAAACAAATTTGCAATGCACCTAGTCTTCAAAATACCTAAGGCAGTTGATTCTCCATTGAAACATCTGTTGTTCCTCTCTAACCAAATACACCAAAAAACACAACCAGGTATCATAAT-CAAATCTTCTTGATAGCTTTGTCAACTTTCCATAGGCTCCAACTCTCATATGCATCCGTAACTGTGAGGGGTGTGGTCCAACTGATGCCAGAGAGACAAAACAA-ATACTCCATAATTCTAAGGCCACATCACAATGAAGAAGAAGGTGTCTGGGGGTTTCAGCCTCTTTTTTGCACATATAGCATCTGTTTGGG-AACTGGATTTTTCTTTTCTTT-ATGTTG</genome_strand>
        <mrna_strand>GCTAACTATACAAACTATCTAAGCCAGAGTTAATGAGTTAGTAAAATCTTGAAGTTGTTCTGCATTAACAGCAGGATACAAGTTGGTCCAACTAAACAAATTTTCAGTGCACCTAGTCTTCAAAATGCCTAAAGCAGTTGACTCTCCATCAAAACATCTCTTGTTCCTCTCTAACCAAATACACCAAAAAATACAAGCAGGTATCATAATCCAGATCTTCTTGATGGCTTTGTCAACTTTCCATAGACTCCAACTCTCATATGCATCCTTAACAGTGAGGGGTGTGGTCCAATTGATGCCAGAGAGACAAAAAAACATGCTCCATAATTCTGAGGCCACCTCACAATGAAGAAGAAGGTGTCTGGGGGTTTCAGCCTCTTTTTTGCACATATAGCATCTGTTTGGGAAATTGGATTTTCTTTGTCTTTCATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315755" ref_strand="+" ref_description="SGN-E315755 [cTOA-26-K18]">
      <seq>agcacttcctagggagtctgaagttaccagtgttgatgctgaagaagaactagtagaatctttgatttcagtttctttatcagatgtccatgattccctggttcctaaagttgaaccagataacaatattgaaacattgccggctatcggatctgatgattttgtgagggtaacatctgatgaggctaaattttccccaagagcaatgacagctcccagggggggaaatacagtatgtctgcaagaggcatcaaatagcagagagaaaagttgtgcagtgtgtgatttgtcaaaaatgtctcccaaggttcaaactgttgctgatccgatctccactaagttggctgccattcatcatgtatctcaagctattaagtctctaaggtggaaacgtcaactgcaaagcaacagaatggatctgcagaatagtgctaaaaatcaggatgagctgccttcagctccgagtttttctgtctgtgcatgtggggataccgactgtattgaagtttgtgatattcgagaatggcttccgacttcaaaattggatgataagttgtggaaactagttctattgcttggagaatcatatttggcgcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43864" stop="45063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44164" g_stop="44763" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E315755" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44164" e_stop="44763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACTTCCTAGGGAGTCTGAAGTTACCAGTGTTGATGCTGAAGAAGAACTAGTAGAATCTTTGATTTCAGTTTCTTTATCAGATGTCCATGATTCCCTGGTTCCTAAAGTTGAACCAGATAACAATATTGAAACATTGCCGGCTATCGGATCTGATGATTTTGTGAGGGTAACATCTGATGAGGCTAAATTTTCCCCAAGAGCAATGACAGCTCCCAGGGGGGGAAATACAGTATGTCTGCAAGAGGCATCAAATAGCAGAGAGAAAAGTTGTGCAGTGTGTGATTTGTCAAAAATGTCTCCCAAGGTTCAAACTGTTGCTGATCCGATCTCCACTAAGTTGGCTGCCATTCATCATGTATCTCAAGCTATTAAGTCTCTAAGGTGGAAACGTCAACTGCAAAGCAACAGAATGGATCTGCAGAATAGTGCTAAAAATCAGGATGAGCTGCCTTCAGCTCCGAGTTTTTCTGTCTGTGCATGTGGGGATACCGACTGTATTGAAGTTTGTGATATTCGAGAATGGCTTCCGACTTCAAAATTGGATGATAAGTTGTGGAAACTAGTTCTATTGCTTGGAGAATCATATTTGGCGCTTGG</genome_strand>
        <mrna_strand>AGCACTTCCTAGGGAGTCTGAAGTTACCAGTGTTGATGCTGAAGAAGAACTAGTAGAATCTTTGATTTCAGTTTCTTTATCAGATGTCCATGATTCCCTGGTTCCTAAAGTTGAACCAGATAACAATATTGAAACATTGCCGGCTATCGGATCTGATGATTTTGTGAGGGTAACATCTGATGAGGCTAAATTTTCCCCAAGAGCAATGACAGCTCCCAGGGGGGGAAATACAGTATGTCTGCAAGAGGCATCAAATAGCAGAGAGAAAAGTTGTGCAGTGTGTGATTTGTCAAAAATGTCTCCCAAGGTTCAAACTGTTGCTGATCCGATCTCCACTAAGTTGGCTGCCATTCATCATGTATCTCAAGCTATTAAGTCTCTAAGGTGGAAACGTCAACTGCAAAGCAACAGAATGGATCTGCAGAATAGTGCTAAAAATCAGGATGAGCTGCCTTCAGCTCCGAGTTTTTCTGTCTGTGCATGTGGGGATACCGACTGTATTGAAGTTTGTGATATTCGAGAATGGCTTCCGACTTCAAAATTGGATGATAAGTTGTGGAAACTAGTTCTATTGCTTGGAGAATCATATTTGGCGCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471971" ref_strand="+" ref_description="SGN-E471971 [cSTB-27-C1]">
      <seq>gtttatggatcaatgcctcaacatcgggaagactcaaaatttggttcttccatgttcgtttgttcattacctgaggttgaaagtgatgataaaagtgaaaaagctgggtcttcactatctgatgattgtttcatgtatgatcagtcatctgacagctacctcttttgggccaaggcttggacactagttggggacgtgtatgtagaattccattcgacagatggtgataagatgccagtacagtcagagcaaaagcccttaactaaagagttaaagatgtcatctgaagttttgagggaggttgaaaggctcaagaaaatgcttggacagtctaatcaaaactgcagctcatgttctttattaaactgcagctgccatagtgatagggccatcagtggaagcagtgcgagcagcagtaatagagatttacgttcaaaaagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44528" stop="45570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44828" g_stop="45270" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E471971" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44828" e_stop="45270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATGGATCAATGCCTCAACATCGACAAGACTCAAAATTTGTTTCTTCCATGTTAGTTTGTTCATTACCTGAGGTCGAAAGTGATGATAAAAGTGAAAAGGCTGGGTCTTCACTATCTGATGGTTGTTTCATGTATGATCAGTCATCTGACAGCTACCTCTTTTGGGCCAAGGCTTGGACACTAGTTGGGGACGTGTATGTAGAATTCCATTCGACAGATGGTGATAAGATGCCAGTACAGTCAGAGCAAAAGCCCTTAACTAAAGAGTTGAAGATGTCATCTGAAGTTTTGAGGGAGGTTGAGAGGCTCAAGAAGACGCTTGGACAGTCTAGTCAAAACTGCAGCTCATGTTCTTTATTGAACTGCAGCTGTCAGAGTGATAGGGCCAGCAGTGGAAGCAGTGCTAGCAGCAGTAATAGAGATTCACGTTCAAAAAGTTA</genome_strand>
        <mrna_strand>GTTTATGGATCAATGCCTCAACATCGGGAAGACTCAAAATTTGGTTCTTCCATGTTCGTTTGTTCATTACCTGAGGTTGAAAGTGATGATAAAAGTGAAAAAGCTGGGTCTTCACTATCTGATGATTGTTTCATGTATGATCAGTCATCTGACAGCTACCTCTTTTGGGCCAAGGCTTGGACACTAGTTGGGGACGTGTATGTAGAATTCCATTCGACAGATGGTGATAAGATGCCAGTACAGTCAGAGCAAAAGCCCTTAACTAAAGAGTTAAAGATGTCATCTGAAGTTTTGAGGGAGGTTGAAAGGCTCAAGAAAATGCTTGGACAGTCTAATCAAAACTGCAGCTCATGTTCTTTATTAAACTGCAGCTGCCATAGTGATAGGGCCATCAGTGGAAGCAGTGCGAGCAGCAGTAATAGAGATTTACGTTCAAAAAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471976" ref_strand="+" ref_description="SGN-E471976 [cSTB-27-C13]">
      <seq>gtttatggatcaatgcctcaacatcgggaagactcaaaatttgtttcttccatgttcgtttgttcattacctgaggttgaaagtgatgataaaagtgaaaaagctgggtcttcactatctgatgattgtttcatgtatgatcagtcatctgacagctacctcttttgggccaaggcttggacactagttggggacgtgtatgtagaattccattcgacagatggtgataagatgccagtacagtcagagcaaaagcccttaactaaagagttaaagatgtcatctgaagttttgagggaggttgaaaggctcaagaagatgcttggacagtctagtcaaaactgcagctcatgttctttattaaactgcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44528" stop="45500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44828" g_stop="45200" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E471976" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44828" e_stop="45200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATGGATCAATGCCTCAACATCGACAAGACTCAAAATTTGTTTCTTCCATGTTAGTTTGTTCATTACCTGAGGTCGAAAGTGATGATAAAAGTGAAAAGGCTGGGTCTTCACTATCTGATGGTTGTTTCATGTATGATCAGTCATCTGACAGCTACCTCTTTTGGGCCAAGGCTTGGACACTAGTTGGGGACGTGTATGTAGAATTCCATTCGACAGATGGTGATAAGATGCCAGTACAGTCAGAGCAAAAGCCCTTAACTAAAGAGTTGAAGATGTCATCTGAAGTTTTGAGGGAGGTTGAGAGGCTCAAGAAGACGCTTGGACAGTCTAGTCAAAACTGCAGCTCATGTTCTTTATTGAACTGCAGCT</genome_strand>
        <mrna_strand>GTTTATGGATCAATGCCTCAACATCGGGAAGACTCAAAATTTGTTTCTTCCATGTTCGTTTGTTCATTACCTGAGGTTGAAAGTGATGATAAAAGTGAAAAAGCTGGGTCTTCACTATCTGATGATTGTTTCATGTATGATCAGTCATCTGACAGCTACCTCTTTTGGGCCAAGGCTTGGACACTAGTTGGGGACGTGTATGTAGAATTCCATTCGACAGATGGTGATAAGATGCCAGTACAGTCAGAGCAAAAGCCCTTAACTAAAGAGTTAAAGATGTCATCTGAAGTTTTGAGGGAGGTTGAAAGGCTCAAGAAGATGCTTGGACAGTCTAGTCAAAACTGCAGCTCATGTTCTTTATTAAACTGCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203614" ref_strand="+" ref_description="SGN-E203614 [cLEC-15-H19]">
      <seq>ggaatcagatgtggattcaagctacttgagaaatgaagtatatactcagtttgctcatacatatttaaggcttgggatgctactggccagtgaagatacatttgctgaggtttacgagaactgtgtccttgaggattctttcaactcctctgttagtagaccgaagatagaccgtagaaagcatgagatttcagctaatgatgccattagagaggctttatctgtctatgagtcactgggtgagttacggaaacaggaatctgcatatgcatacattcagttggcttgctaccaaagggattgctgcttgaaatttttggagcaagatcagaagaaacacggttcatccaagggggaaaaaagctttcttcatagagtaaagcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45721" stop="46705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46021" g_stop="46404" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E203614" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46021" e_stop="46404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATCAGATGTGGATTCAAGCTACTTGAGAAATGAAGTATATACTCAGTTTGCTCATACATATTTAAGGCTTGGGATGCTACTGGCCAGTGAAGATACATTTGCTGAGGTTTACGAGAACTGTGTCCTTGAGGATTCTTTCAACTCCTCTGTTAGTAGACCGAAGATAGACCGTAGAAAGCATGAGATTTCAGCTAATGATGCCATTAGAGAGGCTTTATCTGTCTATGAGTCACTGGGTGAGTTACGGAAACAGGAATCTGCATATGCATACTTTCAGTTGGCTTGCTACCAAAGGGATTGCTGCTTGAAATTTTTGGAGCAAGATCAGAAGAAACACGGTTCATCCAAGGGGGAAAAAAGCTTTCTTCATAGAGTAAAGCA</genome_strand>
        <mrna_strand>GGAATCAGATGTGGATTCAAGCTACTTGAGAAATGAAGTATATACTCAGTTTGCTCATACATATTTAAGGCTTGGGATGCTACTGGCCAGTGAAGATACATTTGCTGAGGTTTACGAGAACTGTGTCCTTGAGGATTCTTTCAACTCCTCTGTTAGTAGACCGAAGATAGACCGTAGAAAGCATGAGATTTCAGCTAATGATGCCATTAGAGAGGCTTTATCTGTCTATGAGTCACTGGGTGAGTTACGGAAACAGGAATCTGCATATGCATACATTCAGTTGGCTTGCTACCAAAGGGATTGCTGCTTGAAATTTTTGGAGCAAGATCAGAAGAAACACGGTTCATCCAAGGGGGAAAAAAGCTTTCTTCATAGAGTAAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353368" ref_strand="+" ref_description="SGN-E353368 [cTOS-15-K18]">
      <seq>gaaacttggtcattaaggagaaaaagcccaaaaatatccttttgtttttataaatagtgcctaaaaatgatgaagaaagatcaaatactttcttcaattctcttgtttttcttcttgtttacagcctttatcacaacaatggcagattcacaagcttcatcacaaccctctaatgagtctaaagttcatatagtgtatactgagcaacctaaagatcaagaacctgaagagtatcatatcaaaaccctaacttctgttcttggcagtgaggaggctgcaaaagaggcattgttatacagttacaagcacgcagctagtggattctcagcaaagctgactgctgagcaggtttctgagctctcaaagttacctggagtgctgcaagttgttccaagccaaacagttcagttgcacactggacgcgtctgaaagactacttttgagacctcatctcaaaaacaagtttccttgatgtgtataaacttgctatctatgcttgtttcaatggtgttttgaacttagattgaaagactatccctactccctaatgtaattgtggtacttgtcgctgtaacgctcgttttaactatatgaaaataaagtcgtctgcttaatatacttgtacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53051" stop="56723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53351" g_stop="53616" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53617" i_stop="54663" i_length="1047">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54664" g_stop="54761" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="364" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54762" i_stop="56157" i_length="1396">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56158" g_stop="56428" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="635" r_length="271" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E353368" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53351" e_stop="53616"/>
          <exon e_start="54664" e_stop="54761"/>
          <exon e_start="56158" e_stop="56428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTTGGTCATTAAGGAGAAAAAGCCCAAAAATATCCTTTTGTTTTTATAAATAGTGCCTAAAAATGATGAAGAAAGATCAAATACTTTCTTCAATTCTCTTGTTTTTCTTCTTGTTTACAGCCTTTATCACAACAATGGCAGATTCACAAGCTTCATCACAACCCTCTAATGAGTCTAAAGTTCATATAGTGTATACTGAGCAACCTAAAGATCAAGAACCTGAAGAGTATCATATCAAAACCCTAACTTCTGTTCTTGGCAGGTTCGAATTATTTTTCCAATTCTATCCTTTTTTTCTGTTTTGAATTGCAATATAGGAAGATGGGGTTGTGGGTAGGTTTGGATTGACCCTGTTTCTAATCAATTTCATCAAAGATTTGATCTTTTTGTAAGATAATAAATTTGATTTTTTTTTCCATATGGGGTTGGACTTTGTCTTTGTTTTCATGCTGAATTTAGTTTTAGGGGGTTAGACTTTTTTTTTTCTGAATTCATTTTCTATATGTTTGATTATTAAGAATGTGAGAGGTTGTCTGATGGGGCTAAGGAGATGTAGAGGTTGGCCAAAGAATACTGGGTGAGGTGATTAGAATGTACATAGCGTAACTTCAGTTTATTGAGGACATGACGCACCATAGATAGGAGGTTTTGGGGGTTTGGTAGTCTGAGTGTTGTCTCTGTGCATTCCAATAGCATTAGCACTAATCTTGTGGTTTCTTGCCCTTCGATTTCTCTTAATACCTGTTGTTCTTTGCTTCGATTATTGCATTTTATGAATGCTAGGTAATGATTGCATGCTTGGACATTTCTTAAGGGAATGGTGAGGGACAAAGTGATTAGATCAACTAGTTCAAAAGTTATAGGAGGAGTAATATGATTTAAAGGATTTTGTTAGTTTATTGTTTTAAATTATAGCTCTGTTACTGCAAAAATTTATGCAATGTATACTCGAACTTTAGGAACATGTAGTGGTTCATACCAAGTTTATTTTCTGCAAGTAGTTAATTTGGACAATCAAAATTACTATCTAGTCTAATTGACTTTTGTGATCTTAATTTGAATAGCGTATGGAACTTTTCAAAGCAAACTTTCCAATATTCATTCAATCACATATTGTAGTAATGAATGAATAACGGTTTCAAGATCATTTGTTGTATTCTTTGGTGAGGAAAGAAGGGACAGAAAATGCTTGCTATCAATTATCAATTTTATGTAATTGTCATGATTATTGTACGGTAATGTATTGTATACTACAAATTTTTGGAGTAAAAATCCTGATATTCTGTGTATACTTGTGGTAATCAAAAAGTGAGGAGGCTGCAAAAGAGGCATTGTTATACAGTTACAAGCACGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAAGTAAGAATTGACTTACTACTCTTTCAGTATTATTGATTAAATTATCTTGGTATATGGTTGGTCTGTATCTTCTTGTGAGATCAGTAATTAGTATGGTGAATTTAAATATGACAGCCATAACGCTTGTCTGTTGAAGTACTTGGCATTCATGTTGAAAAGTTGAACATAGTTTTTCATGTTCAAGGGATTGTTGACAATTAAGCACATTTCTTGTTTCTTGCTAAATCTCAAATTCAAAATATGTTTTTAATTTCATCATTAATAGTTTAACCATCAGAAAATAGAGTGAGGATGTTTGTCATGAATTATGTAAGAATCGTTTGGATTTTATTTTTTTTAGCTTAAGAAAGGGGCAGGGGTTATTTTAGGACAGGTTTAATGGTTTTATATGGAGCATATTCTTGACCAAGATGGTCCACTATTGATAGGCATGGTTTCCTTTTCTTTTGTTCTTTTTTTTAATGCAATCAATACTTTCTTAGTGCTGGATTTGATAACAATAATATCTTACCACTTTAAAAAAGACTATGTGAAGAAGCACAATAGGAATGGCAATGTTAATGTAGGACTTCCAACTTTCATGAAAAGTATGAGAGGAATCATTCGTTATTGATCAATTTTCAACTTTACATGATAAAAGGACAAGAGGAATGATGTTAGGTGTACATTTTTTGGGAATAATTTTGGGAAGGAAATGCCCTGAGACAATAGGTTACTTATCAAAATATGTGTAAGTTCCTTTATTTGGAAAAATAAATTCCCAGTCATAGAAATGTTACTCCTAGTGGTCCAATACCTTCATGTTGCAGTGATGCAACTGGTGCTTTGATATTCAGCAACCCTTACTAAAATTGCTGAATTTATAGCCTTCCTTCCTTTAGAATGCTTGCCCTTTGCTACAATGATCAACTTACTGGTGCTTGGATATTTTCTCTTTTCAGTTTCAAAAACAAAATACTTACTGTTGATGTCTTCTCCTAAGTATCTCTACGTCATACAGATTCATCTTTGTTTTACATCCTTGAGTATCTCTACGTCATATCGATTCATCTTTGATTTACATCCTTGATGTCTATCAAAAAGTCAGCATTGTAGTTCTGGAGTCTGTTTTCCAGGATGTCTAAAATGCAACAGATGCCTTAATTTTTATATGTTCTTTATGCAAAGTCCGACAATTCTTGAAGTTGAGCAATGTTCCAACATTAAGTCAAATCCCTCCTATGATATGGTCATTGTGTCTATTTTGGCTTCCGCTTAAACCTGAGTTTTGTAATTCAATAATGCATCAGTTTTTGCATGTACCTTCCTGGAAAATATGTTCTACGATAATTTTGCATCGTTCTATTCGGGGGTTTTATGCTCTAAGACTAGCCTAACTAAGATATCACTTTTGCAGAGTTACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTGGACGCGTCTGAAAGACTACTTTTGAGACCTCATCTCAAAAACAAGTTTCCTTGATGTGTATAAACTTGCTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTACTCCCTAATGTAATTGTGGTACTTGTCGCTGTAACGCTCGTTTTAACTATATGAAAATAAAGTCGTCTGCTTAATATACTTGTACAAATAGTTGT</genome_strand>
        <mrna_strand>GAAACTTGGTCATTAAGGAGAAAAAGCCCAAAAATATCCTTTTGTTTTTATAAATAGTGCCTAAAAATGATGAAGAAAGATCAAATACTTTCTTCAATTCTCTTGTTTTTCTTCTTGTTTACAGCCTTTATCACAACAATGGCAGATTCACAAGCTTCATCACAACCCTCTAATGAGTCTAAAGTTCATATAGTGTATACTGAGCAACCTAAAGATCAAGAACCTGAAGAGTATCATATCAAAACCCTAACTTCTGTTCTTGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGCTGCAAAAGAGGCATTGTTATACAGTTACAAGCACGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTGGACGCGTCTGAAAGACTACTTTTGAGACCTCATCTCAAAAACAAGTTTCCTTGATGTGTATAAACTTGCTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTACTCCCTAATGTAATTGTGGTACTTGTCGCTGTAACGCTCGTTTTAACTATATGAAAATAAAGTCGTCTGCTTAATATACTTGTACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254242" ref_strand="+" ref_description="SGN-E254242 [cLEG-27-A4]">
      <seq>ggtcattaaggagaaaagcccaaaatatccttttgtttttataaatagtgcctaaaaatgatgaagaaagatcaaatactttcttcaattctcttgtttttcttcttgtttacagcctttatcacaacaatggcagattcacaagcttcatcacaaccctctaatgagtctaaagttcatatagtgtatactgagcaacctaaagatcaagaacctgaagagtatcatatcaaaaccctaacttctgttcttggcagtgaggaggctgcaaaagaggcattgttatacagttacaagcacgcagctagtggattctcagcaaagctgactgctgagcaggtttctgagctctcaaagttacctggagtgctgcaagttgttccaagccaaacagttcagttgcacactggacgcgtctgaaagactacttttgagacctcatctcaaaaacaagtttccttgatgtgtataaacttgctatctatgcttgtttcaatggtgttttgaacttagattgaaagactatccctactccctaatgtaattgtggtacttgtcgctgtaacgctcgttntaactatatgaaaataaagtcgtctgcttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53058" stop="56711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53358" g_stop="53616" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53617" i_stop="54663" i_length="1047">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54664" g_stop="54761" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="355" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54762" i_stop="56157" i_length="1396">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56158" g_stop="56406" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="604" r_length="249" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E254242" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53358" e_stop="53616"/>
          <exon e_start="54664" e_stop="54761"/>
          <exon e_start="56158" e_stop="56406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCATTAAGGAGAAAAAGCCCAAAAATATCCTTTTGTTTTTATAAATAGTGCCTAAAAATGATGAAGAAAGATCAAATACTTTCTTCAATTCTCTTGTTTTTCTTCTTGTTTACAGCCTTTATCACAACAATGGCAGATTCACAAGCTTCATCACAACCCTCTAATGAGTCTAAAGTTCATATAGTGTATACTGAGCAACCTAAAGATCAAGAACCTGAAGAGTATCATATCAAAACCCTAACTTCTGTTCTTGGCAGGTTCGAATTATTTTTCCAATTCTATCCTTTTTTTCTGTTTTGAATTGCAATATAGGAAGATGGGGTTGTGGGTAGGTTTGGATTGACCCTGTTTCTAATCAATTTCATCAAAGATTTGATCTTTTTGTAAGATAATAAATTTGATTTTTTTTTCCATATGGGGTTGGACTTTGTCTTTGTTTTCATGCTGAATTTAGTTTTAGGGGGTTAGACTTTTTTTTTTCTGAATTCATTTTCTATATGTTTGATTATTAAGAATGTGAGAGGTTGTCTGATGGGGCTAAGGAGATGTAGAGGTTGGCCAAAGAATACTGGGTGAGGTGATTAGAATGTACATAGCGTAACTTCAGTTTATTGAGGACATGACGCACCATAGATAGGAGGTTTTGGGGGTTTGGTAGTCTGAGTGTTGTCTCTGTGCATTCCAATAGCATTAGCACTAATCTTGTGGTTTCTTGCCCTTCGATTTCTCTTAATACCTGTTGTTCTTTGCTTCGATTATTGCATTTTATGAATGCTAGGTAATGATTGCATGCTTGGACATTTCTTAAGGGAATGGTGAGGGACAAAGTGATTAGATCAACTAGTTCAAAAGTTATAGGAGGAGTAATATGATTTAAAGGATTTTGTTAGTTTATTGTTTTAAATTATAGCTCTGTTACTGCAAAAATTTATGCAATGTATACTCGAACTTTAGGAACATGTAGTGGTTCATACCAAGTTTATTTTCTGCAAGTAGTTAATTTGGACAATCAAAATTACTATCTAGTCTAATTGACTTTTGTGATCTTAATTTGAATAGCGTATGGAACTTTTCAAAGCAAACTTTCCAATATTCATTCAATCACATATTGTAGTAATGAATGAATAACGGTTTCAAGATCATTTGTTGTATTCTTTGGTGAGGAAAGAAGGGACAGAAAATGCTTGCTATCAATTATCAATTTTATGTAATTGTCATGATTATTGTACGGTAATGTATTGTATACTACAAATTTTTGGAGTAAAAATCCTGATATTCTGTGTATACTTGTGGTAATCAAAAAGTGAGGAGGCTGCAAAAGAGGCATTGTTATACAGTTACAAGCACGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAAGTAAGAATTGACTTACTACTCTTTCAGTATTATTGATTAAATTATCTTGGTATATGGTTGGTCTGTATCTTCTTGTGAGATCAGTAATTAGTATGGTGAATTTAAATATGACAGCCATAACGCTTGTCTGTTGAAGTACTTGGCATTCATGTTGAAAAGTTGAACATAGTTTTTCATGTTCAAGGGATTGTTGACAATTAAGCACATTTCTTGTTTCTTGCTAAATCTCAAATTCAAAATATGTTTTTAATTTCATCATTAATAGTTTAACCATCAGAAAATAGAGTGAGGATGTTTGTCATGAATTATGTAAGAATCGTTTGGATTTTATTTTTTTTAGCTTAAGAAAGGGGCAGGGGTTATTTTAGGACAGGTTTAATGGTTTTATATGGAGCATATTCTTGACCAAGATGGTCCACTATTGATAGGCATGGTTTCCTTTTCTTTTGTTCTTTTTTTTAATGCAATCAATACTTTCTTAGTGCTGGATTTGATAACAATAATATCTTACCACTTTAAAAAAGACTATGTGAAGAAGCACAATAGGAATGGCAATGTTAATGTAGGACTTCCAACTTTCATGAAAAGTATGAGAGGAATCATTCGTTATTGATCAATTTTCAACTTTACATGATAAAAGGACAAGAGGAATGATGTTAGGTGTACATTTTTTGGGAATAATTTTGGGAAGGAAATGCCCTGAGACAATAGGTTACTTATCAAAATATGTGTAAGTTCCTTTATTTGGAAAAATAAATTCCCAGTCATAGAAATGTTACTCCTAGTGGTCCAATACCTTCATGTTGCAGTGATGCAACTGGTGCTTTGATATTCAGCAACCCTTACTAAAATTGCTGAATTTATAGCCTTCCTTCCTTTAGAATGCTTGCCCTTTGCTACAATGATCAACTTACTGGTGCTTGGATATTTTCTCTTTTCAGTTTCAAAAACAAAATACTTACTGTTGATGTCTTCTCCTAAGTATCTCTACGTCATACAGATTCATCTTTGTTTTACATCCTTGAGTATCTCTACGTCATATCGATTCATCTTTGATTTACATCCTTGATGTCTATCAAAAAGTCAGCATTGTAGTTCTGGAGTCTGTTTTCCAGGATGTCTAAAATGCAACAGATGCCTTAATTTTTATATGTTCTTTATGCAAAGTCCGACAATTCTTGAAGTTGAGCAATGTTCCAACATTAAGTCAAATCCCTCCTATGATATGGTCATTGTGTCTATTTTGGCTTCCGCTTAAACCTGAGTTTTGTAATTCAATAATGCATCAGTTTTTGCATGTACCTTCCTGGAAAATATGTTCTACGATAATTTTGCATCGTTCTATTCGGGGGTTTTATGCTCTAAGACTAGCCTAACTAAGATATCACTTTTGCAGAGTTACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTGGACGCGTCTGAAAGACTACTTTTGAGACCTCATCTCAAAAACAAGTTTCCTTGATGTGTATAAACTTGCTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTACTCCCTAATGTAATTGTGGTACTTGTCGCTGTAACGCTCGTTTTAACTATATGAAAATAAAGTCGTCTGCTTA</genome_strand>
        <mrna_strand>GGTCATTAAGGAG-AAAAGCCC-AAAATATCCTTTTGTTTTTATAAATAGTGCCTAAAAATGATGAAGAAAGATCAAATACTTTCTTCAATTCTCTTGTTTTTCTTCTTGTTTACAGCCTTTATCACAACAATGGCAGATTCACAAGCTTCATCACAACCCTCTAATGAGTCTAAAGTTCATATAGTGTATACTGAGCAACCTAAAGATCAAGAACCTGAAGAGTATCATATCAAAACCCTAACTTCTGTTCTTGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGCTGCAAAAGAGGCATTGTTATACAGTTACAAGCACGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTGGACGCGTCTGAAAGACTACTTTTGAGACCTCATCTCAAAAACAAGTTTCCTTGATGTGTATAAACTTGCTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTACTCCCTAATGTAATTGTGGTACTTGTCGCTGTAACGCTCGTTNTAACTATATGAAAATAAAGTCGTCTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274613" ref_strand="+" ref_description="SGN-E274613 [cLEN-11-H19]">
      <seq>atatccttttgtttttataaatagtgcctaaaaatgatgaagaaagatcaaatactttcttcaattctcttgtttttcttcttgtttacagcctttatcacaacaatggcagattcacaagcttcatcacaaccctctaatgagtctaaagttcatatagtgtatactgagcaacctaaagatcaagaacctgaagagtatcatatcaaaaccctaacttctgttcttggcagtgaggaggctgcaaaagaggcattgttatacagttacaagcacgcagctagtggattctcagcaaagctgactgctgagcaggtttctgagctctcaaagttacctggagtgctgcaagttgttccaagccaaacagttcagttgcacactggacgcgtctgaaagactacttttgagacctcatctcaaaaacaagtttccttgatgtgtataaacttgctatctatgcttgtttcaatggtgttttgaacttagattgaaagactatccctactccctaatgtaattgtggtacttgtcgctgtaacgctcgttttaactatatgaaaataaagtcgtctgcttaatataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53084" stop="56711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53384" g_stop="53616" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53617" i_stop="54663" i_length="1047">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54664" g_stop="54761" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="331" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54762" i_stop="56157" i_length="1396">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56158" g_stop="56406" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="580" r_length="249" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="585" polyA_stop="597"/>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E274613" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53384" e_stop="53616"/>
          <exon e_start="54664" e_stop="54761"/>
          <exon e_start="56158" e_stop="56406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCCTTTTGTTTTTATAAATAGTGCCTAAAAATGATGAAGAAAGATCAAATACTTTCTTCAATTCTCTTGTTTTTCTTCTTGTTTACAGCCTTTATCACAACAATGGCAGATTCACAAGCTTCATCACAACCCTCTAATGAGTCTAAAGTTCATATAGTGTATACTGAGCAACCTAAAGATCAAGAACCTGAAGAGTATCATATCAAAACCCTAACTTCTGTTCTTGGCAGGTTCGAATTATTTTTCCAATTCTATCCTTTTTTTCTGTTTTGAATTGCAATATAGGAAGATGGGGTTGTGGGTAGGTTTGGATTGACCCTGTTTCTAATCAATTTCATCAAAGATTTGATCTTTTTGTAAGATAATAAATTTGATTTTTTTTTCCATATGGGGTTGGACTTTGTCTTTGTTTTCATGCTGAATTTAGTTTTAGGGGGTTAGACTTTTTTTTTTCTGAATTCATTTTCTATATGTTTGATTATTAAGAATGTGAGAGGTTGTCTGATGGGGCTAAGGAGATGTAGAGGTTGGCCAAAGAATACTGGGTGAGGTGATTAGAATGTACATAGCGTAACTTCAGTTTATTGAGGACATGACGCACCATAGATAGGAGGTTTTGGGGGTTTGGTAGTCTGAGTGTTGTCTCTGTGCATTCCAATAGCATTAGCACTAATCTTGTGGTTTCTTGCCCTTCGATTTCTCTTAATACCTGTTGTTCTTTGCTTCGATTATTGCATTTTATGAATGCTAGGTAATGATTGCATGCTTGGACATTTCTTAAGGGAATGGTGAGGGACAAAGTGATTAGATCAACTAGTTCAAAAGTTATAGGAGGAGTAATATGATTTAAAGGATTTTGTTAGTTTATTGTTTTAAATTATAGCTCTGTTACTGCAAAAATTTATGCAATGTATACTCGAACTTTAGGAACATGTAGTGGTTCATACCAAGTTTATTTTCTGCAAGTAGTTAATTTGGACAATCAAAATTACTATCTAGTCTAATTGACTTTTGTGATCTTAATTTGAATAGCGTATGGAACTTTTCAAAGCAAACTTTCCAATATTCATTCAATCACATATTGTAGTAATGAATGAATAACGGTTTCAAGATCATTTGTTGTATTCTTTGGTGAGGAAAGAAGGGACAGAAAATGCTTGCTATCAATTATCAATTTTATGTAATTGTCATGATTATTGTACGGTAATGTATTGTATACTACAAATTTTTGGAGTAAAAATCCTGATATTCTGTGTATACTTGTGGTAATCAAAAAGTGAGGAGGCTGCAAAAGAGGCATTGTTATACAGTTACAAGCACGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAAGTAAGAATTGACTTACTACTCTTTCAGTATTATTGATTAAATTATCTTGGTATATGGTTGGTCTGTATCTTCTTGTGAGATCAGTAATTAGTATGGTGAATTTAAATATGACAGCCATAACGCTTGTCTGTTGAAGTACTTGGCATTCATGTTGAAAAGTTGAACATAGTTTTTCATGTTCAAGGGATTGTTGACAATTAAGCACATTTCTTGTTTCTTGCTAAATCTCAAATTCAAAATATGTTTTTAATTTCATCATTAATAGTTTAACCATCAGAAAATAGAGTGAGGATGTTTGTCATGAATTATGTAAGAATCGTTTGGATTTTATTTTTTTTAGCTTAAGAAAGGGGCAGGGGTTATTTTAGGACAGGTTTAATGGTTTTATATGGAGCATATTCTTGACCAAGATGGTCCACTATTGATAGGCATGGTTTCCTTTTCTTTTGTTCTTTTTTTTAATGCAATCAATACTTTCTTAGTGCTGGATTTGATAACAATAATATCTTACCACTTTAAAAAAGACTATGTGAAGAAGCACAATAGGAATGGCAATGTTAATGTAGGACTTCCAACTTTCATGAAAAGTATGAGAGGAATCATTCGTTATTGATCAATTTTCAACTTTACATGATAAAAGGACAAGAGGAATGATGTTAGGTGTACATTTTTTGGGAATAATTTTGGGAAGGAAATGCCCTGAGACAATAGGTTACTTATCAAAATATGTGTAAGTTCCTTTATTTGGAAAAATAAATTCCCAGTCATAGAAATGTTACTCCTAGTGGTCCAATACCTTCATGTTGCAGTGATGCAACTGGTGCTTTGATATTCAGCAACCCTTACTAAAATTGCTGAATTTATAGCCTTCCTTCCTTTAGAATGCTTGCCCTTTGCTACAATGATCAACTTACTGGTGCTTGGATATTTTCTCTTTTCAGTTTCAAAAACAAAATACTTACTGTTGATGTCTTCTCCTAAGTATCTCTACGTCATACAGATTCATCTTTGTTTTACATCCTTGAGTATCTCTACGTCATATCGATTCATCTTTGATTTACATCCTTGATGTCTATCAAAAAGTCAGCATTGTAGTTCTGGAGTCTGTTTTCCAGGATGTCTAAAATGCAACAGATGCCTTAATTTTTATATGTTCTTTATGCAAAGTCCGACAATTCTTGAAGTTGAGCAATGTTCCAACATTAAGTCAAATCCCTCCTATGATATGGTCATTGTGTCTATTTTGGCTTCCGCTTAAACCTGAGTTTTGTAATTCAATAATGCATCAGTTTTTGCATGTACCTTCCTGGAAAATATGTTCTACGATAATTTTGCATCGTTCTATTCGGGGGTTTTATGCTCTAAGACTAGCCTAACTAAGATATCACTTTTGCAGAGTTACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTGGACGCGTCTGAAAGACTACTTTTGAGACCTCATCTCAAAAACAAGTTTCCTTGATGTGTATAAACTTGCTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTACTCCCTAATGTAATTGTGGTACTTGTCGCTGTAACGCTCGTTTTAACTATATGAAAATAAAGTCGTCTGCTTA</genome_strand>
        <mrna_strand>ATATCCTTTTGTTTTTATAAATAGTGCCTAAAAATGATGAAGAAAGATCAAATACTTTCTTCAATTCTCTTGTTTTTCTTCTTGTTTACAGCCTTTATCACAACAATGGCAGATTCACAAGCTTCATCACAACCCTCTAATGAGTCTAAAGTTCATATAGTGTATACTGAGCAACCTAAAGATCAAGAACCTGAAGAGTATCATATCAAAACCCTAACTTCTGTTCTTGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGCTGCAAAAGAGGCATTGTTATACAGTTACAAGCACGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTGGACGCGTCTGAAAGACTACTTTTGAGACCTCATCTCAAAAACAAGTTTCCTTGATGTGTATAAACTTGCTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTACTCCCTAATGTAATTGTGGTACTTGTCGCTGTAACGCTCGTTTTAACTATATGAAAATAAAGTCGTCTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714020" ref_strand="+" ref_description="SGN-E714020 [FB10BB12]">
      <seq>gtttttcttcttgtttacagcctttatcacaacaatggcagattcacaagcttcatcacaaccctctaatgagtctaaagttcatatagtgtatactgagcaacctaaagatcaagaacctgaagagtatcatatcaaaaccctaacttctgttcttggcagtgaggaggctgcaaaagaggcattgttatacagttacaagcacgcagctagtggattctcagcaaagctgactgctgagcaggtttctgagctctcaaagttacctggagtgctgcaagttgttccaagccaaacagttcagttgcacactggacgcgtctgaaagactacttttgagacctcatctcaaaaacaagtttccttgatgtgtataaacttgctatctatgcttgtttcaatggtgttttgaacttagattgaaagactatccctactccctaatgtaattgtggtacttgtcgctgtaacgctcgttttaactatatgaaaataaagtcgtctgcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53155" stop="56711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53455" g_stop="53616" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53617" i_stop="54663" i_length="1047">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54664" g_stop="54761" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="260" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54762" i_stop="56157" i_length="1396">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56158" g_stop="56406" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="509" r_length="249" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="510" polyA_stop="525"/>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E714020" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53455" e_stop="53616"/>
          <exon e_start="54664" e_stop="54761"/>
          <exon e_start="56158" e_stop="56406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTCTTCTTGTTTACAGCCTTTATCACAACAATGGCAGATTCACAAGCTTCATCACAACCCTCTAATGAGTCTAAAGTTCATATAGTGTATACTGAGCAACCTAAAGATCAAGAACCTGAAGAGTATCATATCAAAACCCTAACTTCTGTTCTTGGCAGGTTCGAATTATTTTTCCAATTCTATCCTTTTTTTCTGTTTTGAATTGCAATATAGGAAGATGGGGTTGTGGGTAGGTTTGGATTGACCCTGTTTCTAATCAATTTCATCAAAGATTTGATCTTTTTGTAAGATAATAAATTTGATTTTTTTTTCCATATGGGGTTGGACTTTGTCTTTGTTTTCATGCTGAATTTAGTTTTAGGGGGTTAGACTTTTTTTTTTCTGAATTCATTTTCTATATGTTTGATTATTAAGAATGTGAGAGGTTGTCTGATGGGGCTAAGGAGATGTAGAGGTTGGCCAAAGAATACTGGGTGAGGTGATTAGAATGTACATAGCGTAACTTCAGTTTATTGAGGACATGACGCACCATAGATAGGAGGTTTTGGGGGTTTGGTAGTCTGAGTGTTGTCTCTGTGCATTCCAATAGCATTAGCACTAATCTTGTGGTTTCTTGCCCTTCGATTTCTCTTAATACCTGTTGTTCTTTGCTTCGATTATTGCATTTTATGAATGCTAGGTAATGATTGCATGCTTGGACATTTCTTAAGGGAATGGTGAGGGACAAAGTGATTAGATCAACTAGTTCAAAAGTTATAGGAGGAGTAATATGATTTAAAGGATTTTGTTAGTTTATTGTTTTAAATTATAGCTCTGTTACTGCAAAAATTTATGCAATGTATACTCGAACTTTAGGAACATGTAGTGGTTCATACCAAGTTTATTTTCTGCAAGTAGTTAATTTGGACAATCAAAATTACTATCTAGTCTAATTGACTTTTGTGATCTTAATTTGAATAGCGTATGGAACTTTTCAAAGCAAACTTTCCAATATTCATTCAATCACATATTGTAGTAATGAATGAATAACGGTTTCAAGATCATTTGTTGTATTCTTTGGTGAGGAAAGAAGGGACAGAAAATGCTTGCTATCAATTATCAATTTTATGTAATTGTCATGATTATTGTACGGTAATGTATTGTATACTACAAATTTTTGGAGTAAAAATCCTGATATTCTGTGTATACTTGTGGTAATCAAAAAGTGAGGAGGCTGCAAAAGAGGCATTGTTATACAGTTACAAGCACGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAAGTAAGAATTGACTTACTACTCTTTCAGTATTATTGATTAAATTATCTTGGTATATGGTTGGTCTGTATCTTCTTGTGAGATCAGTAATTAGTATGGTGAATTTAAATATGACAGCCATAACGCTTGTCTGTTGAAGTACTTGGCATTCATGTTGAAAAGTTGAACATAGTTTTTCATGTTCAAGGGATTGTTGACAATTAAGCACATTTCTTGTTTCTTGCTAAATCTCAAATTCAAAATATGTTTTTAATTTCATCATTAATAGTTTAACCATCAGAAAATAGAGTGAGGATGTTTGTCATGAATTATGTAAGAATCGTTTGGATTTTATTTTTTTTAGCTTAAGAAAGGGGCAGGGGTTATTTTAGGACAGGTTTAATGGTTTTATATGGAGCATATTCTTGACCAAGATGGTCCACTATTGATAGGCATGGTTTCCTTTTCTTTTGTTCTTTTTTTTAATGCAATCAATACTTTCTTAGTGCTGGATTTGATAACAATAATATCTTACCACTTTAAAAAAGACTATGTGAAGAAGCACAATAGGAATGGCAATGTTAATGTAGGACTTCCAACTTTCATGAAAAGTATGAGAGGAATCATTCGTTATTGATCAATTTTCAACTTTACATGATAAAAGGACAAGAGGAATGATGTTAGGTGTACATTTTTTGGGAATAATTTTGGGAAGGAAATGCCCTGAGACAATAGGTTACTTATCAAAATATGTGTAAGTTCCTTTATTTGGAAAAATAAATTCCCAGTCATAGAAATGTTACTCCTAGTGGTCCAATACCTTCATGTTGCAGTGATGCAACTGGTGCTTTGATATTCAGCAACCCTTACTAAAATTGCTGAATTTATAGCCTTCCTTCCTTTAGAATGCTTGCCCTTTGCTACAATGATCAACTTACTGGTGCTTGGATATTTTCTCTTTTCAGTTTCAAAAACAAAATACTTACTGTTGATGTCTTCTCCTAAGTATCTCTACGTCATACAGATTCATCTTTGTTTTACATCCTTGAGTATCTCTACGTCATATCGATTCATCTTTGATTTACATCCTTGATGTCTATCAAAAAGTCAGCATTGTAGTTCTGGAGTCTGTTTTCCAGGATGTCTAAAATGCAACAGATGCCTTAATTTTTATATGTTCTTTATGCAAAGTCCGACAATTCTTGAAGTTGAGCAATGTTCCAACATTAAGTCAAATCCCTCCTATGATATGGTCATTGTGTCTATTTTGGCTTCCGCTTAAACCTGAGTTTTGTAATTCAATAATGCATCAGTTTTTGCATGTACCTTCCTGGAAAATATGTTCTACGATAATTTTGCATCGTTCTATTCGGGGGTTTTATGCTCTAAGACTAGCCTAACTAAGATATCACTTTTGCAGAGTTACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTGGACGCGTCTGAAAGACTACTTTTGAGACCTCATCTCAAAAACAAGTTTCCTTGATGTGTATAAACTTGCTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTACTCCCTAATGTAATTGTGGTACTTGTCGCTGTAACGCTCGTTTTAACTATATGAAAATAAAGTCGTCTGCTTA</genome_strand>
        <mrna_strand>GTTTTTCTTCTTGTTTACAGCCTTTATCACAACAATGGCAGATTCACAAGCTTCATCACAACCCTCTAATGAGTCTAAAGTTCATATAGTGTATACTGAGCAACCTAAAGATCAAGAACCTGAAGAGTATCATATCAAAACCCTAACTTCTGTTCTTGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGCTGCAAAAGAGGCATTGTTATACAGTTACAAGCACGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTGGACGCGTCTGAAAGACTACTTTTGAGACCTCATCTCAAAAACAAGTTTCCTTGATGTGTATAAACTTGCTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTACTCCCTAATGTAATTGTGGTACTTGTCGCTGTAACGCTCGTTTTAACTATATGAAAATAAAGTCGTCTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714266" ref_strand="+" ref_description="SGN-E714266 [FB10DH04]">
      <seq>gtttttcttcttgtttacagcctttatcacaacaatggcagattcacaagcttcatcacaaccctctaatgagtctaaagttcatatagtgtatactgagcaacctaaagatcaagaacctgaagagtatcatatcaaaaccctaacttctgttcttggcagtgaggaggctgcaaaagaggcattgttatacagttacaagcacgcagctagtggattctcagcaaagctgactgctgagcaggtttctgagctctcaaagttacctggagtgctgcaagttgttccaagccaaacagttcagttgcacactggacgcgtctgaaagactacttttgagacctcatctcaaaaacaagtttccttgatgtgtataaacttgctatctatgcttgtttcaatggtgttttgaacttagattgaaagactatccctactccctaatgtaattgtggtacttgtcgctgtaacgctcgttttaactatatgaaaataaagtcgtctgcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53155" stop="56711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53455" g_stop="53616" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53617" i_stop="54663" i_length="1047">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54664" g_stop="54761" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="260" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54762" i_stop="56157" i_length="1396">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56158" g_stop="56406" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="509" r_length="249" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E714266" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53455" e_stop="53616"/>
          <exon e_start="54664" e_stop="54761"/>
          <exon e_start="56158" e_stop="56406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTCTTCTTGTTTACAGCCTTTATCACAACAATGGCAGATTCACAAGCTTCATCACAACCCTCTAATGAGTCTAAAGTTCATATAGTGTATACTGAGCAACCTAAAGATCAAGAACCTGAAGAGTATCATATCAAAACCCTAACTTCTGTTCTTGGCAGGTTCGAATTATTTTTCCAATTCTATCCTTTTTTTCTGTTTTGAATTGCAATATAGGAAGATGGGGTTGTGGGTAGGTTTGGATTGACCCTGTTTCTAATCAATTTCATCAAAGATTTGATCTTTTTGTAAGATAATAAATTTGATTTTTTTTTCCATATGGGGTTGGACTTTGTCTTTGTTTTCATGCTGAATTTAGTTTTAGGGGGTTAGACTTTTTTTTTTCTGAATTCATTTTCTATATGTTTGATTATTAAGAATGTGAGAGGTTGTCTGATGGGGCTAAGGAGATGTAGAGGTTGGCCAAAGAATACTGGGTGAGGTGATTAGAATGTACATAGCGTAACTTCAGTTTATTGAGGACATGACGCACCATAGATAGGAGGTTTTGGGGGTTTGGTAGTCTGAGTGTTGTCTCTGTGCATTCCAATAGCATTAGCACTAATCTTGTGGTTTCTTGCCCTTCGATTTCTCTTAATACCTGTTGTTCTTTGCTTCGATTATTGCATTTTATGAATGCTAGGTAATGATTGCATGCTTGGACATTTCTTAAGGGAATGGTGAGGGACAAAGTGATTAGATCAACTAGTTCAAAAGTTATAGGAGGAGTAATATGATTTAAAGGATTTTGTTAGTTTATTGTTTTAAATTATAGCTCTGTTACTGCAAAAATTTATGCAATGTATACTCGAACTTTAGGAACATGTAGTGGTTCATACCAAGTTTATTTTCTGCAAGTAGTTAATTTGGACAATCAAAATTACTATCTAGTCTAATTGACTTTTGTGATCTTAATTTGAATAGCGTATGGAACTTTTCAAAGCAAACTTTCCAATATTCATTCAATCACATATTGTAGTAATGAATGAATAACGGTTTCAAGATCATTTGTTGTATTCTTTGGTGAGGAAAGAAGGGACAGAAAATGCTTGCTATCAATTATCAATTTTATGTAATTGTCATGATTATTGTACGGTAATGTATTGTATACTACAAATTTTTGGAGTAAAAATCCTGATATTCTGTGTATACTTGTGGTAATCAAAAAGTGAGGAGGCTGCAAAAGAGGCATTGTTATACAGTTACAAGCACGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAAGTAAGAATTGACTTACTACTCTTTCAGTATTATTGATTAAATTATCTTGGTATATGGTTGGTCTGTATCTTCTTGTGAGATCAGTAATTAGTATGGTGAATTTAAATATGACAGCCATAACGCTTGTCTGTTGAAGTACTTGGCATTCATGTTGAAAAGTTGAACATAGTTTTTCATGTTCAAGGGATTGTTGACAATTAAGCACATTTCTTGTTTCTTGCTAAATCTCAAATTCAAAATATGTTTTTAATTTCATCATTAATAGTTTAACCATCAGAAAATAGAGTGAGGATGTTTGTCATGAATTATGTAAGAATCGTTTGGATTTTATTTTTTTTAGCTTAAGAAAGGGGCAGGGGTTATTTTAGGACAGGTTTAATGGTTTTATATGGAGCATATTCTTGACCAAGATGGTCCACTATTGATAGGCATGGTTTCCTTTTCTTTTGTTCTTTTTTTTAATGCAATCAATACTTTCTTAGTGCTGGATTTGATAACAATAATATCTTACCACTTTAAAAAAGACTATGTGAAGAAGCACAATAGGAATGGCAATGTTAATGTAGGACTTCCAACTTTCATGAAAAGTATGAGAGGAATCATTCGTTATTGATCAATTTTCAACTTTACATGATAAAAGGACAAGAGGAATGATGTTAGGTGTACATTTTTTGGGAATAATTTTGGGAAGGAAATGCCCTGAGACAATAGGTTACTTATCAAAATATGTGTAAGTTCCTTTATTTGGAAAAATAAATTCCCAGTCATAGAAATGTTACTCCTAGTGGTCCAATACCTTCATGTTGCAGTGATGCAACTGGTGCTTTGATATTCAGCAACCCTTACTAAAATTGCTGAATTTATAGCCTTCCTTCCTTTAGAATGCTTGCCCTTTGCTACAATGATCAACTTACTGGTGCTTGGATATTTTCTCTTTTCAGTTTCAAAAACAAAATACTTACTGTTGATGTCTTCTCCTAAGTATCTCTACGTCATACAGATTCATCTTTGTTTTACATCCTTGAGTATCTCTACGTCATATCGATTCATCTTTGATTTACATCCTTGATGTCTATCAAAAAGTCAGCATTGTAGTTCTGGAGTCTGTTTTCCAGGATGTCTAAAATGCAACAGATGCCTTAATTTTTATATGTTCTTTATGCAAAGTCCGACAATTCTTGAAGTTGAGCAATGTTCCAACATTAAGTCAAATCCCTCCTATGATATGGTCATTGTGTCTATTTTGGCTTCCGCTTAAACCTGAGTTTTGTAATTCAATAATGCATCAGTTTTTGCATGTACCTTCCTGGAAAATATGTTCTACGATAATTTTGCATCGTTCTATTCGGGGGTTTTATGCTCTAAGACTAGCCTAACTAAGATATCACTTTTGCAGAGTTACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTGGACGCGTCTGAAAGACTACTTTTGAGACCTCATCTCAAAAACAAGTTTCCTTGATGTGTATAAACTTGCTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTACTCCCTAATGTAATTGTGGTACTTGTCGCTGTAACGCTCGTTTTAACTATATGAAAATAAAGTCGTCTGCTTA</genome_strand>
        <mrna_strand>GTTTTTCTTCTTGTTTACAGCCTTTATCACAACAATGGCAGATTCACAAGCTTCATCACAACCCTCTAATGAGTCTAAAGTTCATATAGTGTATACTGAGCAACCTAAAGATCAAGAACCTGAAGAGTATCATATCAAAACCCTAACTTCTGTTCTTGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGCTGCAAAAGAGGCATTGTTATACAGTTACAAGCACGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTGGACGCGTCTGAAAGACTACTTTTGAGACCTCATCTCAAAAACAAGTTTCCTTGATGTGTATAAACTTGCTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTACTCCCTAATGTAATTGTGGTACTTGTCGCTGTAACGCTCGTTTTAACTATATGAAAATAAAGTCGTCTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733931" ref_strand="+" ref_description="SGN-E733931 [LB11BD01]">
      <seq>tttttcttcttgtttacagcctttatcacaacaatggcagattcacaagcttcatcacaaccctctaatgagtctaaagttcatatagtgtatactgagcaacctaaagatcaagaacctgaagagtatcatatcaaaaccctaacttctgttcttggcagtgaggaggctgcaaaagaggcattgttatacagttacaagcacgcagctagtggattctcagcaaagctgactgctgagcaggtttctgagctctcaaagttacctggagtgctgcaagttgttccaagccaaacagttcagttgcacactggacgcgtctgaaagactacttttgagacctcatctcaaaaacaagtttccttgatgtgtataaacttgctatctatgcttgtttcaatggtgttttgaacttagattgaaagactatccctactccctaatgtaattgtggtacttgtcgctgtaacgctcgttttaactatatgaaaataaagtcgtctgcttaatataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53156" stop="56711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53456" g_stop="53616" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53617" i_stop="54663" i_length="1047">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54664" g_stop="54761" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="259" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54762" i_stop="56157" i_length="1396">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56158" g_stop="56406" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="508" r_length="249" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="513" polyA_stop="524"/>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E733931" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53456" e_stop="53616"/>
          <exon e_start="54664" e_stop="54761"/>
          <exon e_start="56158" e_stop="56406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTCTTGTTTACAGCCTTTATCACAACAATGGCAGATTCACAAGCTTCATCACAACCCTCTAATGAGTCTAAAGTTCATATAGTGTATACTGAGCAACCTAAAGATCAAGAACCTGAAGAGTATCATATCAAAACCCTAACTTCTGTTCTTGGCAGGTTCGAATTATTTTTCCAATTCTATCCTTTTTTTCTGTTTTGAATTGCAATATAGGAAGATGGGGTTGTGGGTAGGTTTGGATTGACCCTGTTTCTAATCAATTTCATCAAAGATTTGATCTTTTTGTAAGATAATAAATTTGATTTTTTTTTCCATATGGGGTTGGACTTTGTCTTTGTTTTCATGCTGAATTTAGTTTTAGGGGGTTAGACTTTTTTTTTTCTGAATTCATTTTCTATATGTTTGATTATTAAGAATGTGAGAGGTTGTCTGATGGGGCTAAGGAGATGTAGAGGTTGGCCAAAGAATACTGGGTGAGGTGATTAGAATGTACATAGCGTAACTTCAGTTTATTGAGGACATGACGCACCATAGATAGGAGGTTTTGGGGGTTTGGTAGTCTGAGTGTTGTCTCTGTGCATTCCAATAGCATTAGCACTAATCTTGTGGTTTCTTGCCCTTCGATTTCTCTTAATACCTGTTGTTCTTTGCTTCGATTATTGCATTTTATGAATGCTAGGTAATGATTGCATGCTTGGACATTTCTTAAGGGAATGGTGAGGGACAAAGTGATTAGATCAACTAGTTCAAAAGTTATAGGAGGAGTAATATGATTTAAAGGATTTTGTTAGTTTATTGTTTTAAATTATAGCTCTGTTACTGCAAAAATTTATGCAATGTATACTCGAACTTTAGGAACATGTAGTGGTTCATACCAAGTTTATTTTCTGCAAGTAGTTAATTTGGACAATCAAAATTACTATCTAGTCTAATTGACTTTTGTGATCTTAATTTGAATAGCGTATGGAACTTTTCAAAGCAAACTTTCCAATATTCATTCAATCACATATTGTAGTAATGAATGAATAACGGTTTCAAGATCATTTGTTGTATTCTTTGGTGAGGAAAGAAGGGACAGAAAATGCTTGCTATCAATTATCAATTTTATGTAATTGTCATGATTATTGTACGGTAATGTATTGTATACTACAAATTTTTGGAGTAAAAATCCTGATATTCTGTGTATACTTGTGGTAATCAAAAAGTGAGGAGGCTGCAAAAGAGGCATTGTTATACAGTTACAAGCACGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAAGTAAGAATTGACTTACTACTCTTTCAGTATTATTGATTAAATTATCTTGGTATATGGTTGGTCTGTATCTTCTTGTGAGATCAGTAATTAGTATGGTGAATTTAAATATGACAGCCATAACGCTTGTCTGTTGAAGTACTTGGCATTCATGTTGAAAAGTTGAACATAGTTTTTCATGTTCAAGGGATTGTTGACAATTAAGCACATTTCTTGTTTCTTGCTAAATCTCAAATTCAAAATATGTTTTTAATTTCATCATTAATAGTTTAACCATCAGAAAATAGAGTGAGGATGTTTGTCATGAATTATGTAAGAATCGTTTGGATTTTATTTTTTTTAGCTTAAGAAAGGGGCAGGGGTTATTTTAGGACAGGTTTAATGGTTTTATATGGAGCATATTCTTGACCAAGATGGTCCACTATTGATAGGCATGGTTTCCTTTTCTTTTGTTCTTTTTTTTAATGCAATCAATACTTTCTTAGTGCTGGATTTGATAACAATAATATCTTACCACTTTAAAAAAGACTATGTGAAGAAGCACAATAGGAATGGCAATGTTAATGTAGGACTTCCAACTTTCATGAAAAGTATGAGAGGAATCATTCGTTATTGATCAATTTTCAACTTTACATGATAAAAGGACAAGAGGAATGATGTTAGGTGTACATTTTTTGGGAATAATTTTGGGAAGGAAATGCCCTGAGACAATAGGTTACTTATCAAAATATGTGTAAGTTCCTTTATTTGGAAAAATAAATTCCCAGTCATAGAAATGTTACTCCTAGTGGTCCAATACCTTCATGTTGCAGTGATGCAACTGGTGCTTTGATATTCAGCAACCCTTACTAAAATTGCTGAATTTATAGCCTTCCTTCCTTTAGAATGCTTGCCCTTTGCTACAATGATCAACTTACTGGTGCTTGGATATTTTCTCTTTTCAGTTTCAAAAACAAAATACTTACTGTTGATGTCTTCTCCTAAGTATCTCTACGTCATACAGATTCATCTTTGTTTTACATCCTTGAGTATCTCTACGTCATATCGATTCATCTTTGATTTACATCCTTGATGTCTATCAAAAAGTCAGCATTGTAGTTCTGGAGTCTGTTTTCCAGGATGTCTAAAATGCAACAGATGCCTTAATTTTTATATGTTCTTTATGCAAAGTCCGACAATTCTTGAAGTTGAGCAATGTTCCAACATTAAGTCAAATCCCTCCTATGATATGGTCATTGTGTCTATTTTGGCTTCCGCTTAAACCTGAGTTTTGTAATTCAATAATGCATCAGTTTTTGCATGTACCTTCCTGGAAAATATGTTCTACGATAATTTTGCATCGTTCTATTCGGGGGTTTTATGCTCTAAGACTAGCCTAACTAAGATATCACTTTTGCAGAGTTACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTGGACGCGTCTGAAAGACTACTTTTGAGACCTCATCTCAAAAACAAGTTTCCTTGATGTGTATAAACTTGCTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTACTCCCTAATGTAATTGTGGTACTTGTCGCTGTAACGCTCGTTTTAACTATATGAAAATAAAGTCGTCTGCTTA</genome_strand>
        <mrna_strand>TTTTTCTTCTTGTTTACAGCCTTTATCACAACAATGGCAGATTCACAAGCTTCATCACAACCCTCTAATGAGTCTAAAGTTCATATAGTGTATACTGAGCAACCTAAAGATCAAGAACCTGAAGAGTATCATATCAAAACCCTAACTTCTGTTCTTGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGCTGCAAAAGAGGCATTGTTATACAGTTACAAGCACGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTGGACGCGTCTGAAAGACTACTTTTGAGACCTCATCTCAAAAACAAGTTTCCTTGATGTGTATAAACTTGCTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTACTCCCTAATGTAATTGTGGTACTTGTCGCTGTAACGCTCGTTTTAACTATATGAAAATAAAGTCGTCTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E592844" ref_strand="+" ref_description="SGN-E592844 [36062]">
      <seq>gttgtttacagctttataacaacaatggcagatccaccaagtttcacaaccctctaatgaatccaaagtncatatagtgtatactgagcaacctaaagatcaagaacctgaggagtatcatatcaaaaccctaacttctgttcttggcagtgaggaggctgcaaaagaggcattgatatacagttacaagcacgcagctagtggattctcagcaaaagctgactgctgagcaggtttttgagctctcaaagcaacctggagtgctgcaagttgttccaagccaaacagttcagttgcacactcgacgcgtctgaaagacaatacttgagacctcatctccaaaacaagtttccttgatgtgtataaacttgttatctatgcttgtttcaatggtgttttgaacttagattgaaagactatccctattccttaatgtaattgtggtacttatcgctgtaacgcttgttttaactatatgaaaataaaatcgtctgcttaaaaaaaaaaaaaataaaacaaaacagacaaggaacacaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53210" stop="56711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53464" g_stop="53616" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53617" i_stop="54663" i_length="1047">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54664" g_stop="54761" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="249" r_length="99" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54762" i_stop="56157" i_length="1396">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.599" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56158" g_stop="56406" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="498" r_length="249" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="499" polyA_stop="516"/>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E592844" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53464" e_stop="53616"/>
          <exon e_start="54664" e_stop="54761"/>
          <exon e_start="56158" e_stop="56406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTTACAGCCTTTATCACAACAATGGCAGATTCACAAGCTTCATCACAACCCTCTAATGAGTCTAAAGTTCATATAGTGTATACTGAGCAACCTAAAGATCAAGAACCTGAAGAGTATCATATCAAAACCCTAACTTCTGTTCTTGGCAGGTTCGAATTATTTTTCCAATTCTATCCTTTTTTTCTGTTTTGAATTGCAATATAGGAAGATGGGGTTGTGGGTAGGTTTGGATTGACCCTGTTTCTAATCAATTTCATCAAAGATTTGATCTTTTTGTAAGATAATAAATTTGATTTTTTTTTCCATATGGGGTTGGACTTTGTCTTTGTTTTCATGCTGAATTTAGTTTTAGGGGGTTAGACTTTTTTTTTTCTGAATTCATTTTCTATATGTTTGATTATTAAGAATGTGAGAGGTTGTCTGATGGGGCTAAGGAGATGTAGAGGTTGGCCAAAGAATACTGGGTGAGGTGATTAGAATGTACATAGCGTAACTTCAGTTTATTGAGGACATGACGCACCATAGATAGGAGGTTTTGGGGGTTTGGTAGTCTGAGTGTTGTCTCTGTGCATTCCAATAGCATTAGCACTAATCTTGTGGTTTCTTGCCCTTCGATTTCTCTTAATACCTGTTGTTCTTTGCTTCGATTATTGCATTTTATGAATGCTAGGTAATGATTGCATGCTTGGACATTTCTTAAGGGAATGGTGAGGGACAAAGTGATTAGATCAACTAGTTCAAAAGTTATAGGAGGAGTAATATGATTTAAAGGATTTTGTTAGTTTATTGTTTTAAATTATAGCTCTGTTACTGCAAAAATTTATGCAATGTATACTCGAACTTTAGGAACATGTAGTGGTTCATACCAAGTTTATTTTCTGCAAGTAGTTAATTTGGACAATCAAAATTACTATCTAGTCTAATTGACTTTTGTGATCTTAATTTGAATAGCGTATGGAACTTTTCAAAGCAAACTTTCCAATATTCATTCAATCACATATTGTAGTAATGAATGAATAACGGTTTCAAGATCATTTGTTGTATTCTTTGGTGAGGAAAGAAGGGACAGAAAATGCTTGCTATCAATTATCAATTTTATGTAATTGTCATGATTATTGTACGGTAATGTATTGTATACTACAAATTTTTGGAGTAAAAATCCTGATATTCTGTGTATACTTGTGGTAATCAAAAAGTGAGGAGGCTGCAAAAGAGGCATTGTTATACAGTTACAAGCACGCAGCTAGTGGATTCTCAGC-AAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAAGTAAGAATTGACTTACTACTCTTTCAGTATTATTGATTAAATTATCTTGGTATATGGTTGGTCTGTATCTTCTTGTGAGATCAGTAATTAGTATGGTGAATTTAAATATGACAGCCATAACGCTTGTCTGTTGAAGTACTTGGCATTCATGTTGAAAAGTTGAACATAGTTTTTCATGTTCAAGGGATTGTTGACAATTAAGCACATTTCTTGTTTCTTGCTAAATCTCAAATTCAAAATATGTTTTTAATTTCATCATTAATAGTTTAACCATCAGAAAATAGAGTGAGGATGTTTGTCATGAATTATGTAAGAATCGTTTGGATTTTATTTTTTTTAGCTTAAGAAAGGGGCAGGGGTTATTTTAGGACAGGTTTAATGGTTTTATATGGAGCATATTCTTGACCAAGATGGTCCACTATTGATAGGCATGGTTTCCTTTTCTTTTGTTCTTTTTTTTAATGCAATCAATACTTTCTTAGTGCTGGATTTGATAACAATAATATCTTACCACTTTAAAAAAGACTATGTGAAGAAGCACAATAGGAATGGCAATGTTAATGTAGGACTTCCAACTTTCATGAAAAGTATGAGAGGAATCATTCGTTATTGATCAATTTTCAACTTTACATGATAAAAGGACAAGAGGAATGATGTTAGGTGTACATTTTTTGGGAATAATTTTGGGAAGGAAATGCCCTGAGACAATAGGTTACTTATCAAAATATGTGTAAGTTCCTTTATTTGGAAAAATAAATTCCCAGTCATAGAAATGTTACTCCTAGTGGTCCAATACCTTCATGTTGCAGTGATGCAACTGGTGCTTTGATATTCAGCAACCCTTACTAAAATTGCTGAATTTATAGCCTTCCTTCCTTTAGAATGCTTGCCCTTTGCTACAATGATCAACTTACTGGTGCTTGGATATTTTCTCTTTTCAGTTTCAAAAACAAAATACTTACTGTTGATGTCTTCTCCTAAGTATCTCTACGTCATACAGATTCATCTTTGTTTTACATCCTTGAGTATCTCTACGTCATATCGATTCATCTTTGATTTACATCCTTGATGTCTATCAAAAAGTCAGCATTGTAGTTCTGGAGTCTGTTTTCCAGGATGTCTAAAATGCAACAGATGCCTTAATTTTTATATGTTCTTTATGCAAAGTCCGACAATTCTTGAAGTTGAGCAATGTTCCAACATTAAGTCAAATCCCTCCTATGATATGGTCATTGTGTCTATTTTGGCTTCCGCTTAAACCTGAGTTTTGTAATTCAATAATGCATCAGTTTTTGCATGTACCTTCCTGGAAAATATGTTCTACGATAATTTTGCATCGTTCTATTCGGGGGTTTTATGCTCTAAGACTAGCCTAACTAAGATATCACTTTTGCAGAGTTACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTGGACGCGTCTGAAAGACTACTTTTGAGACCTCATCTCAAAAACAAGTTTCCTTGATGTGTATAAACTTGCTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTACTCCCTAATGTAATTGTGGTACTTGTCGCTGTAACGCTCGTTTTAACTATATGAAAATAAAGTCGTCTGCTTA</genome_strand>
        <mrna_strand>GTTGTTTACAG-CTTTATAACAACAATGGCAGATCCACCAAGTT--TCACAACCCTCTAATGAATCCAAAGTNCATATAGTGTATACTGAGCAACCTAAAGATCAAGAACCTGAGGAGTATCATATCAAAACCCTAACTTCTGTTCTTGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGCTGCAAAAGAGGCATTGATATACAGTTACAAGCACGCAGCTAGTGGATTCTCAGCAAAAGCTGACTGCTGAGCAGGTTTTTGAGCTCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTCGACGCGTCTGAAAGACAATACTTGAGACCTCATCTCCAAAACAAGTTTCCTTGATGTGTATAAACTTGTTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTATTCCTTAATGTAATTGTGGTACTTATCGCTGTAACGCTTGTTTTAACTATATGAAAATAAAATCGTCTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600452" ref_strand="+" ref_description="SGN-E600452 [53463]">
      <seq>gttgtttacagcttttataacaacaatggcagattcacaagtttcacaaccctctaatgaatccaaagttcatatagtgtatactgagcaacctaaagatcaagaacctgaggagtatcatatcaaaaccctaacttctgttcttggcagtgaggaggctgcaaaagaggcattgatatacagttacaagcacgcagctagtggattctcagcaaagctgactgctgagcaggtttttgagctctcaaagcaacctggagtgctgcaagttgttccaagccaaacagttcagttgcacactcgacgcgtctgaaagacaatacttgagacctcatctccaaaacaagtttccttgatgtgtataaacttgttatctatgcttgtttcaatggtgttttgaacttagattgaaagactatccctattccttaatgtaattgtggtacttatcgctgtaacgcttgttttaactatatgaaaataaaatcgtctgcttaatatccttgtacaaaaaaaagggggacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53165" stop="56723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53464" g_stop="53616" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53617" i_stop="54663" i_length="1047">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54664" g_stop="54761" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="248" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54762" i_stop="56157" i_length="1396">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.599" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56158" g_stop="56406" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="497" r_length="249" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E600452" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E600452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53464" e_stop="53616"/>
          <exon e_start="54664" e_stop="54761"/>
          <exon e_start="56158" e_stop="56406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTTACAGCCTTTATCACAACAATGGCAGATTCACAAGCTTCATCACAACCCTCTAATGAGTCTAAAGTTCATATAGTGTATACTGAGCAACCTAAAGATCAAGAACCTGAAGAGTATCATATCAAAACCCTAACTTCTGTTCTTGGCAGGTTCGAATTATTTTTCCAATTCTATCCTTTTTTTCTGTTTTGAATTGCAATATAGGAAGATGGGGTTGTGGGTAGGTTTGGATTGACCCTGTTTCTAATCAATTTCATCAAAGATTTGATCTTTTTGTAAGATAATAAATTTGATTTTTTTTTCCATATGGGGTTGGACTTTGTCTTTGTTTTCATGCTGAATTTAGTTTTAGGGGGTTAGACTTTTTTTTTTCTGAATTCATTTTCTATATGTTTGATTATTAAGAATGTGAGAGGTTGTCTGATGGGGCTAAGGAGATGTAGAGGTTGGCCAAAGAATACTGGGTGAGGTGATTAGAATGTACATAGCGTAACTTCAGTTTATTGAGGACATGACGCACCATAGATAGGAGGTTTTGGGGGTTTGGTAGTCTGAGTGTTGTCTCTGTGCATTCCAATAGCATTAGCACTAATCTTGTGGTTTCTTGCCCTTCGATTTCTCTTAATACCTGTTGTTCTTTGCTTCGATTATTGCATTTTATGAATGCTAGGTAATGATTGCATGCTTGGACATTTCTTAAGGGAATGGTGAGGGACAAAGTGATTAGATCAACTAGTTCAAAAGTTATAGGAGGAGTAATATGATTTAAAGGATTTTGTTAGTTTATTGTTTTAAATTATAGCTCTGTTACTGCAAAAATTTATGCAATGTATACTCGAACTTTAGGAACATGTAGTGGTTCATACCAAGTTTATTTTCTGCAAGTAGTTAATTTGGACAATCAAAATTACTATCTAGTCTAATTGACTTTTGTGATCTTAATTTGAATAGCGTATGGAACTTTTCAAAGCAAACTTTCCAATATTCATTCAATCACATATTGTAGTAATGAATGAATAACGGTTTCAAGATCATTTGTTGTATTCTTTGGTGAGGAAAGAAGGGACAGAAAATGCTTGCTATCAATTATCAATTTTATGTAATTGTCATGATTATTGTACGGTAATGTATTGTATACTACAAATTTTTGGAGTAAAAATCCTGATATTCTGTGTATACTTGTGGTAATCAAAAAGTGAGGAGGCTGCAAAAGAGGCATTGTTATACAGTTACAAGCACGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAAGTAAGAATTGACTTACTACTCTTTCAGTATTATTGATTAAATTATCTTGGTATATGGTTGGTCTGTATCTTCTTGTGAGATCAGTAATTAGTATGGTGAATTTAAATATGACAGCCATAACGCTTGTCTGTTGAAGTACTTGGCATTCATGTTGAAAAGTTGAACATAGTTTTTCATGTTCAAGGGATTGTTGACAATTAAGCACATTTCTTGTTTCTTGCTAAATCTCAAATTCAAAATATGTTTTTAATTTCATCATTAATAGTTTAACCATCAGAAAATAGAGTGAGGATGTTTGTCATGAATTATGTAAGAATCGTTTGGATTTTATTTTTTTTAGCTTAAGAAAGGGGCAGGGGTTATTTTAGGACAGGTTTAATGGTTTTATATGGAGCATATTCTTGACCAAGATGGTCCACTATTGATAGGCATGGTTTCCTTTTCTTTTGTTCTTTTTTTTAATGCAATCAATACTTTCTTAGTGCTGGATTTGATAACAATAATATCTTACCACTTTAAAAAAGACTATGTGAAGAAGCACAATAGGAATGGCAATGTTAATGTAGGACTTCCAACTTTCATGAAAAGTATGAGAGGAATCATTCGTTATTGATCAATTTTCAACTTTACATGATAAAAGGACAAGAGGAATGATGTTAGGTGTACATTTTTTGGGAATAATTTTGGGAAGGAAATGCCCTGAGACAATAGGTTACTTATCAAAATATGTGTAAGTTCCTTTATTTGGAAAAATAAATTCCCAGTCATAGAAATGTTACTCCTAGTGGTCCAATACCTTCATGTTGCAGTGATGCAACTGGTGCTTTGATATTCAGCAACCCTTACTAAAATTGCTGAATTTATAGCCTTCCTTCCTTTAGAATGCTTGCCCTTTGCTACAATGATCAACTTACTGGTGCTTGGATATTTTCTCTTTTCAGTTTCAAAAACAAAATACTTACTGTTGATGTCTTCTCCTAAGTATCTCTACGTCATACAGATTCATCTTTGTTTTACATCCTTGAGTATCTCTACGTCATATCGATTCATCTTTGATTTACATCCTTGATGTCTATCAAAAAGTCAGCATTGTAGTTCTGGAGTCTGTTTTCCAGGATGTCTAAAATGCAACAGATGCCTTAATTTTTATATGTTCTTTATGCAAAGTCCGACAATTCTTGAAGTTGAGCAATGTTCCAACATTAAGTCAAATCCCTCCTATGATATGGTCATTGTGTCTATTTTGGCTTCCGCTTAAACCTGAGTTTTGTAATTCAATAATGCATCAGTTTTTGCATGTACCTTCCTGGAAAATATGTTCTACGATAATTTTGCATCGTTCTATTCGGGGGTTTTATGCTCTAAGACTAGCCTAACTAAGATATCACTTTTGCAGAGTTACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTGGACGCGTCTGAAAGACTACTTTTGAGACCTCATCTCAAAAACAAGTTTCCTTGATGTGTATAAACTTGCTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTACTCCCTAATGTAATTGTGGTACTTGTCGCTGTAACGCTCGTTTTAACTATATGAAAATAAAGTCGTCTGCTTA</genome_strand>
        <mrna_strand>GTTGTTTACAGCTTTTATAACAACAATGGCAGATTCACAAG-TT--TCACAACCCTCTAATGAATCCAAAGTTCATATAGTGTATACTGAGCAACCTAAAGATCAAGAACCTGAGGAGTATCATATCAAAACCCTAACTTCTGTTCTTGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGCTGCAAAAGAGGCATTGATATACAGTTACAAGCACGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTTTGAGCTCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTCGACGCGTCTGAAAGACAATACTTGAGACCTCATCTCCAAAACAAGTTTCCTTGATGTGTATAAACTTGTTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTATTCCTTAATGTAATTGTGGTACTTATCGCTGTAACGCTTGTTTTAACTATATGAAAATAAAATCGTCTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544938" ref_strand="+" ref_description="SGN-E544938 [TUS-67-I12](-)">
      <seq>caacaatggcagattcacaagcttcatcacaaccctctaatgagtctaaagttcatatagtgtatactgagcaacctaaagatcaagaacctgaagagtatcatatcaaaaccctaacttctgttcttggcagtgaggaggctgcaaaagaggcattgttatacagttacaagcacgcagctagtggattctcagcaaagctgactgctgagcaggtttctgagctctcaaagttacctggagtgctgcaagttgttccaagccaaacagttcagttgcacactggacgcgtctgaaagactacttttgagacctcatctcaaaaacaagtttccttgatgtgtataaacttgctatctatgcttgtttcaatggtgttttgaacttagattgaaagactatccctactccctaatgtaattgtggtacttgtcgctgtaacgctcgttttaactatatgaaaataaagtcgtctgcttaatatacttgtacaaatagttgtcttgtgatggtgaataatttaggcaaaaaatgccaccaaagcagcaatgaactttgcatctcatataaaacatcacatgaacttagtttatgtttgttttggcgtgagaattttccaagatataatagtaattgggaacagttttataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53184" stop="56876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53484" g_stop="53616" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53617" i_stop="54663" i_length="1047">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54664" g_stop="54761" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="231" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54762" i_stop="56157" i_length="1396">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56158" g_stop="56577" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="651" r_length="420" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="652" polyA_stop="661"/>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E544938" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53484" e_stop="53616"/>
          <exon e_start="54664" e_stop="54761"/>
          <exon e_start="56158" e_stop="56577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATGGCAGATTCACAAGCTTCATCACAACCCTCTAATGAGTCTAAAGTTCATATAGTGTATACTGAGCAACCTAAAGATCAAGAACCTGAAGAGTATCATATCAAAACCCTAACTTCTGTTCTTGGCAGGTTCGAATTATTTTTCCAATTCTATCCTTTTTTTCTGTTTTGAATTGCAATATAGGAAGATGGGGTTGTGGGTAGGTTTGGATTGACCCTGTTTCTAATCAATTTCATCAAAGATTTGATCTTTTTGTAAGATAATAAATTTGATTTTTTTTTCCATATGGGGTTGGACTTTGTCTTTGTTTTCATGCTGAATTTAGTTTTAGGGGGTTAGACTTTTTTTTTTCTGAATTCATTTTCTATATGTTTGATTATTAAGAATGTGAGAGGTTGTCTGATGGGGCTAAGGAGATGTAGAGGTTGGCCAAAGAATACTGGGTGAGGTGATTAGAATGTACATAGCGTAACTTCAGTTTATTGAGGACATGACGCACCATAGATAGGAGGTTTTGGGGGTTTGGTAGTCTGAGTGTTGTCTCTGTGCATTCCAATAGCATTAGCACTAATCTTGTGGTTTCTTGCCCTTCGATTTCTCTTAATACCTGTTGTTCTTTGCTTCGATTATTGCATTTTATGAATGCTAGGTAATGATTGCATGCTTGGACATTTCTTAAGGGAATGGTGAGGGACAAAGTGATTAGATCAACTAGTTCAAAAGTTATAGGAGGAGTAATATGATTTAAAGGATTTTGTTAGTTTATTGTTTTAAATTATAGCTCTGTTACTGCAAAAATTTATGCAATGTATACTCGAACTTTAGGAACATGTAGTGGTTCATACCAAGTTTATTTTCTGCAAGTAGTTAATTTGGACAATCAAAATTACTATCTAGTCTAATTGACTTTTGTGATCTTAATTTGAATAGCGTATGGAACTTTTCAAAGCAAACTTTCCAATATTCATTCAATCACATATTGTAGTAATGAATGAATAACGGTTTCAAGATCATTTGTTGTATTCTTTGGTGAGGAAAGAAGGGACAGAAAATGCTTGCTATCAATTATCAATTTTATGTAATTGTCATGATTATTGTACGGTAATGTATTGTATACTACAAATTTTTGGAGTAAAAATCCTGATATTCTGTGTATACTTGTGGTAATCAAAAAGTGAGGAGGCTGCAAAAGAGGCATTGTTATACAGTTACAAGCACGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAAGTAAGAATTGACTTACTACTCTTTCAGTATTATTGATTAAATTATCTTGGTATATGGTTGGTCTGTATCTTCTTGTGAGATCAGTAATTAGTATGGTGAATTTAAATATGACAGCCATAACGCTTGTCTGTTGAAGTACTTGGCATTCATGTTGAAAAGTTGAACATAGTTTTTCATGTTCAAGGGATTGTTGACAATTAAGCACATTTCTTGTTTCTTGCTAAATCTCAAATTCAAAATATGTTTTTAATTTCATCATTAATAGTTTAACCATCAGAAAATAGAGTGAGGATGTTTGTCATGAATTATGTAAGAATCGTTTGGATTTTATTTTTTTTAGCTTAAGAAAGGGGCAGGGGTTATTTTAGGACAGGTTTAATGGTTTTATATGGAGCATATTCTTGACCAAGATGGTCCACTATTGATAGGCATGGTTTCCTTTTCTTTTGTTCTTTTTTTTAATGCAATCAATACTTTCTTAGTGCTGGATTTGATAACAATAATATCTTACCACTTTAAAAAAGACTATGTGAAGAAGCACAATAGGAATGGCAATGTTAATGTAGGACTTCCAACTTTCATGAAAAGTATGAGAGGAATCATTCGTTATTGATCAATTTTCAACTTTACATGATAAAAGGACAAGAGGAATGATGTTAGGTGTACATTTTTTGGGAATAATTTTGGGAAGGAAATGCCCTGAGACAATAGGTTACTTATCAAAATATGTGTAAGTTCCTTTATTTGGAAAAATAAATTCCCAGTCATAGAAATGTTACTCCTAGTGGTCCAATACCTTCATGTTGCAGTGATGCAACTGGTGCTTTGATATTCAGCAACCCTTACTAAAATTGCTGAATTTATAGCCTTCCTTCCTTTAGAATGCTTGCCCTTTGCTACAATGATCAACTTACTGGTGCTTGGATATTTTCTCTTTTCAGTTTCAAAAACAAAATACTTACTGTTGATGTCTTCTCCTAAGTATCTCTACGTCATACAGATTCATCTTTGTTTTACATCCTTGAGTATCTCTACGTCATATCGATTCATCTTTGATTTACATCCTTGATGTCTATCAAAAAGTCAGCATTGTAGTTCTGGAGTCTGTTTTCCAGGATGTCTAAAATGCAACAGATGCCTTAATTTTTATATGTTCTTTATGCAAAGTCCGACAATTCTTGAAGTTGAGCAATGTTCCAACATTAAGTCAAATCCCTCCTATGATATGGTCATTGTGTCTATTTTGGCTTCCGCTTAAACCTGAGTTTTGTAATTCAATAATGCATCAGTTTTTGCATGTACCTTCCTGGAAAATATGTTCTACGATAATTTTGCATCGTTCTATTCGGGGGTTTTATGCTCTAAGACTAGCCTAACTAAGATATCACTTTTGCAGAGTTACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTGGACGCGTCTGAAAGACTACTTTTGAGACCTCATCTCAAAAACAAGTTTCCTTGATGTGTATAAACTTGCTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTACTCCCTAATGTAATTGTGGTACTTGTCGCTGTAACGCTCGTTTTAACTATATGAAAATAAAGTCGTCTGCTTAATATACTTGTACAAATAGTTGTCTTGTGATGGTGAATAATTTAGGCAAAAAATGCCACCAAAGCAGCAATGAACTTTGCATCTCATATAAAACATCACATGAACTTAGTTTATGTTTGTTTTGGCGTGAGAATTTTCCAAGATATAATAGTAATTGGGAACAGTTTTATAG</genome_strand>
        <mrna_strand>CAACAATGGCAGATTCACAAGCTTCATCACAACCCTCTAATGAGTCTAAAGTTCATATAGTGTATACTGAGCAACCTAAAGATCAAGAACCTGAAGAGTATCATATCAAAACCCTAACTTCTGTTCTTGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGCTGCAAAAGAGGCATTGTTATACAGTTACAAGCACGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTGGACGCGTCTGAAAGACTACTTTTGAGACCTCATCTCAAAAACAAGTTTCCTTGATGTGTATAAACTTGCTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTACTCCCTAATGTAATTGTGGTACTTGTCGCTGTAACGCTCGTTTTAACTATATGAAAATAAAGTCGTCTGCTTAATATACTTGTACAAATAGTTGTCTTGTGATGGTGAATAATTTAGGCAAAAAATGCCACCAAAGCAGCAATGAACTTTGCATCTCATATAAAACATCACATGAACTTAGTTTATGTTTGTTTTGGCGTGAGAATTTTCCAAGATATAATAGTAATTGGGAACAGTTTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309329" ref_strand="+" ref_description="SGN-E309329 [cLEY-22-N22]">
      <seq>aacaatggcagattcacaagcttcatcacaaccctctaatgagtctaaagttcatatagtgtatactgagcaacctaaagatcaagaacctgaagagtatcatatcaaaaccctaacttctgttcttggcagtgaggaggctgcaaaagaggcattgttatacagttacaagcacgcagctagtggattctcagcaaagctgactgctgagcaggtttctgagctctcaaagttacctggagtgctgcaagttgttccaagccaaacagttcagttgcacactggacgcgtctgaaagactacttttgagacctcatctcaaaaacaagtttccttgatgtgtataaacttgctatctatgcttgtttcaatggtgttttgaacttagattgaaagactatccctactccctaatgtaattgtggtacttgtcgctgtaacgctcgttttaactatatgaaaataaagtcgtctgcttaatatacttgtacaaatagttgtcttgtgatggtgaataatttaggcaaaaaatgccaccaaagcagcaatgaactttgcatctcatataaaacatcacatgaacttagtttatgtttgtttttggcgtgagaattttccaagatataatagtaattgggaacagttttataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53185" stop="56876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53485" g_stop="53616" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53617" i_stop="54663" i_length="1047">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54664" g_stop="54761" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="230" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54762" i_stop="56157" i_length="1396">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56158" g_stop="56577" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="651" r_length="421" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="652" polyA_stop="661"/>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E309329" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53485" e_stop="53616"/>
          <exon e_start="54664" e_stop="54761"/>
          <exon e_start="56158" e_stop="56577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCAGATTCACAAGCTTCATCACAACCCTCTAATGAGTCTAAAGTTCATATAGTGTATACTGAGCAACCTAAAGATCAAGAACCTGAAGAGTATCATATCAAAACCCTAACTTCTGTTCTTGGCAGGTTCGAATTATTTTTCCAATTCTATCCTTTTTTTCTGTTTTGAATTGCAATATAGGAAGATGGGGTTGTGGGTAGGTTTGGATTGACCCTGTTTCTAATCAATTTCATCAAAGATTTGATCTTTTTGTAAGATAATAAATTTGATTTTTTTTTCCATATGGGGTTGGACTTTGTCTTTGTTTTCATGCTGAATTTAGTTTTAGGGGGTTAGACTTTTTTTTTTCTGAATTCATTTTCTATATGTTTGATTATTAAGAATGTGAGAGGTTGTCTGATGGGGCTAAGGAGATGTAGAGGTTGGCCAAAGAATACTGGGTGAGGTGATTAGAATGTACATAGCGTAACTTCAGTTTATTGAGGACATGACGCACCATAGATAGGAGGTTTTGGGGGTTTGGTAGTCTGAGTGTTGTCTCTGTGCATTCCAATAGCATTAGCACTAATCTTGTGGTTTCTTGCCCTTCGATTTCTCTTAATACCTGTTGTTCTTTGCTTCGATTATTGCATTTTATGAATGCTAGGTAATGATTGCATGCTTGGACATTTCTTAAGGGAATGGTGAGGGACAAAGTGATTAGATCAACTAGTTCAAAAGTTATAGGAGGAGTAATATGATTTAAAGGATTTTGTTAGTTTATTGTTTTAAATTATAGCTCTGTTACTGCAAAAATTTATGCAATGTATACTCGAACTTTAGGAACATGTAGTGGTTCATACCAAGTTTATTTTCTGCAAGTAGTTAATTTGGACAATCAAAATTACTATCTAGTCTAATTGACTTTTGTGATCTTAATTTGAATAGCGTATGGAACTTTTCAAAGCAAACTTTCCAATATTCATTCAATCACATATTGTAGTAATGAATGAATAACGGTTTCAAGATCATTTGTTGTATTCTTTGGTGAGGAAAGAAGGGACAGAAAATGCTTGCTATCAATTATCAATTTTATGTAATTGTCATGATTATTGTACGGTAATGTATTGTATACTACAAATTTTTGGAGTAAAAATCCTGATATTCTGTGTATACTTGTGGTAATCAAAAAGTGAGGAGGCTGCAAAAGAGGCATTGTTATACAGTTACAAGCACGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAAGTAAGAATTGACTTACTACTCTTTCAGTATTATTGATTAAATTATCTTGGTATATGGTTGGTCTGTATCTTCTTGTGAGATCAGTAATTAGTATGGTGAATTTAAATATGACAGCCATAACGCTTGTCTGTTGAAGTACTTGGCATTCATGTTGAAAAGTTGAACATAGTTTTTCATGTTCAAGGGATTGTTGACAATTAAGCACATTTCTTGTTTCTTGCTAAATCTCAAATTCAAAATATGTTTTTAATTTCATCATTAATAGTTTAACCATCAGAAAATAGAGTGAGGATGTTTGTCATGAATTATGTAAGAATCGTTTGGATTTTATTTTTTTTAGCTTAAGAAAGGGGCAGGGGTTATTTTAGGACAGGTTTAATGGTTTTATATGGAGCATATTCTTGACCAAGATGGTCCACTATTGATAGGCATGGTTTCCTTTTCTTTTGTTCTTTTTTTTAATGCAATCAATACTTTCTTAGTGCTGGATTTGATAACAATAATATCTTACCACTTTAAAAAAGACTATGTGAAGAAGCACAATAGGAATGGCAATGTTAATGTAGGACTTCCAACTTTCATGAAAAGTATGAGAGGAATCATTCGTTATTGATCAATTTTCAACTTTACATGATAAAAGGACAAGAGGAATGATGTTAGGTGTACATTTTTTGGGAATAATTTTGGGAAGGAAATGCCCTGAGACAATAGGTTACTTATCAAAATATGTGTAAGTTCCTTTATTTGGAAAAATAAATTCCCAGTCATAGAAATGTTACTCCTAGTGGTCCAATACCTTCATGTTGCAGTGATGCAACTGGTGCTTTGATATTCAGCAACCCTTACTAAAATTGCTGAATTTATAGCCTTCCTTCCTTTAGAATGCTTGCCCTTTGCTACAATGATCAACTTACTGGTGCTTGGATATTTTCTCTTTTCAGTTTCAAAAACAAAATACTTACTGTTGATGTCTTCTCCTAAGTATCTCTACGTCATACAGATTCATCTTTGTTTTACATCCTTGAGTATCTCTACGTCATATCGATTCATCTTTGATTTACATCCTTGATGTCTATCAAAAAGTCAGCATTGTAGTTCTGGAGTCTGTTTTCCAGGATGTCTAAAATGCAACAGATGCCTTAATTTTTATATGTTCTTTATGCAAAGTCCGACAATTCTTGAAGTTGAGCAATGTTCCAACATTAAGTCAAATCCCTCCTATGATATGGTCATTGTGTCTATTTTGGCTTCCGCTTAAACCTGAGTTTTGTAATTCAATAATGCATCAGTTTTTGCATGTACCTTCCTGGAAAATATGTTCTACGATAATTTTGCATCGTTCTATTCGGGGGTTTTATGCTCTAAGACTAGCCTAACTAAGATATCACTTTTGCAGAGTTACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTGGACGCGTCTGAAAGACTACTTTTGAGACCTCATCTCAAAAACAAGTTTCCTTGATGTGTATAAACTTGCTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTACTCCCTAATGTAATTGTGGTACTTGTCGCTGTAACGCTCGTTTTAACTATATGAAAATAAAGTCGTCTGCTTAATATACTTGTACAAATAGTTGTCTTGTGATGGTGAATAATTTAGGCAAAAAATGCCACCAAAGCAGCAATGAACTTTGCATCTCATATAAAACATCACATGAACTTAGTTTATGTTTG-TTTTGGCGTGAGAATTTTCCAAGATATAATAGTAATTGGGAACAGTTTTATAG</genome_strand>
        <mrna_strand>AACAATGGCAGATTCACAAGCTTCATCACAACCCTCTAATGAGTCTAAAGTTCATATAGTGTATACTGAGCAACCTAAAGATCAAGAACCTGAAGAGTATCATATCAAAACCCTAACTTCTGTTCTTGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGCTGCAAAAGAGGCATTGTTATACAGTTACAAGCACGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTGGACGCGTCTGAAAGACTACTTTTGAGACCTCATCTCAAAAACAAGTTTCCTTGATGTGTATAAACTTGCTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTACTCCCTAATGTAATTGTGGTACTTGTCGCTGTAACGCTCGTTTTAACTATATGAAAATAAAGTCGTCTGCTTAATATACTTGTACAAATAGTTGTCTTGTGATGGTGAATAATTTAGGCAAAAAATGCCACCAAAGCAGCAATGAACTTTGCATCTCATATAAAACATCACATGAACTTAGTTTATGTTTGTTTTTGGCGTGAGAATTTTCCAAGATATAATAGTAATTGGGAACAGTTTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285291" ref_strand="+" ref_description="SGN-E285291 [cLER-20-K1]">
      <seq>aagcttcatcacaaccctctaatgagtctaaagttcatatagtgtatactgagcaacctaaagatcaagaacctgaagagtatcatatcaaaaccctaacttctgttcttggcagtgaggaggctgcaaaagaggcattgttatacagttacaagcacgcagctagtggattctcagcaaagctgactgctgagcaggtttctgagctctcaaagttacctggagtgctgcaagttgttccaagccaaacagttcagttgcacactggacgcgtctgaaagactacttttgagacctcatctcaaaaacaagtttccttgatgtgtataaacttgctatctatgcttgtttcaatggtgttttgaacttagattgaaagactatccctactccctaatgtaattgtggtacttatcgctgtaacgctcgttttaactatatgaaaataaagtcgtctgcttaatataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53202" stop="56711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53502" g_stop="53616" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53617" i_stop="54663" i_length="1047">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54664" g_stop="54761" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="213" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54762" i_stop="56157" i_length="1396">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56158" g_stop="56406" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="462" r_length="249" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="467" polyA_stop="476"/>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E285291" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53502" e_stop="53616"/>
          <exon e_start="54664" e_stop="54761"/>
          <exon e_start="56158" e_stop="56406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCATCACAACCCTCTAATGAGTCTAAAGTTCATATAGTGTATACTGAGCAACCTAAAGATCAAGAACCTGAAGAGTATCATATCAAAACCCTAACTTCTGTTCTTGGCAGGTTCGAATTATTTTTCCAATTCTATCCTTTTTTTCTGTTTTGAATTGCAATATAGGAAGATGGGGTTGTGGGTAGGTTTGGATTGACCCTGTTTCTAATCAATTTCATCAAAGATTTGATCTTTTTGTAAGATAATAAATTTGATTTTTTTTTCCATATGGGGTTGGACTTTGTCTTTGTTTTCATGCTGAATTTAGTTTTAGGGGGTTAGACTTTTTTTTTTCTGAATTCATTTTCTATATGTTTGATTATTAAGAATGTGAGAGGTTGTCTGATGGGGCTAAGGAGATGTAGAGGTTGGCCAAAGAATACTGGGTGAGGTGATTAGAATGTACATAGCGTAACTTCAGTTTATTGAGGACATGACGCACCATAGATAGGAGGTTTTGGGGGTTTGGTAGTCTGAGTGTTGTCTCTGTGCATTCCAATAGCATTAGCACTAATCTTGTGGTTTCTTGCCCTTCGATTTCTCTTAATACCTGTTGTTCTTTGCTTCGATTATTGCATTTTATGAATGCTAGGTAATGATTGCATGCTTGGACATTTCTTAAGGGAATGGTGAGGGACAAAGTGATTAGATCAACTAGTTCAAAAGTTATAGGAGGAGTAATATGATTTAAAGGATTTTGTTAGTTTATTGTTTTAAATTATAGCTCTGTTACTGCAAAAATTTATGCAATGTATACTCGAACTTTAGGAACATGTAGTGGTTCATACCAAGTTTATTTTCTGCAAGTAGTTAATTTGGACAATCAAAATTACTATCTAGTCTAATTGACTTTTGTGATCTTAATTTGAATAGCGTATGGAACTTTTCAAAGCAAACTTTCCAATATTCATTCAATCACATATTGTAGTAATGAATGAATAACGGTTTCAAGATCATTTGTTGTATTCTTTGGTGAGGAAAGAAGGGACAGAAAATGCTTGCTATCAATTATCAATTTTATGTAATTGTCATGATTATTGTACGGTAATGTATTGTATACTACAAATTTTTGGAGTAAAAATCCTGATATTCTGTGTATACTTGTGGTAATCAAAAAGTGAGGAGGCTGCAAAAGAGGCATTGTTATACAGTTACAAGCACGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAAGTAAGAATTGACTTACTACTCTTTCAGTATTATTGATTAAATTATCTTGGTATATGGTTGGTCTGTATCTTCTTGTGAGATCAGTAATTAGTATGGTGAATTTAAATATGACAGCCATAACGCTTGTCTGTTGAAGTACTTGGCATTCATGTTGAAAAGTTGAACATAGTTTTTCATGTTCAAGGGATTGTTGACAATTAAGCACATTTCTTGTTTCTTGCTAAATCTCAAATTCAAAATATGTTTTTAATTTCATCATTAATAGTTTAACCATCAGAAAATAGAGTGAGGATGTTTGTCATGAATTATGTAAGAATCGTTTGGATTTTATTTTTTTTAGCTTAAGAAAGGGGCAGGGGTTATTTTAGGACAGGTTTAATGGTTTTATATGGAGCATATTCTTGACCAAGATGGTCCACTATTGATAGGCATGGTTTCCTTTTCTTTTGTTCTTTTTTTTAATGCAATCAATACTTTCTTAGTGCTGGATTTGATAACAATAATATCTTACCACTTTAAAAAAGACTATGTGAAGAAGCACAATAGGAATGGCAATGTTAATGTAGGACTTCCAACTTTCATGAAAAGTATGAGAGGAATCATTCGTTATTGATCAATTTTCAACTTTACATGATAAAAGGACAAGAGGAATGATGTTAGGTGTACATTTTTTGGGAATAATTTTGGGAAGGAAATGCCCTGAGACAATAGGTTACTTATCAAAATATGTGTAAGTTCCTTTATTTGGAAAAATAAATTCCCAGTCATAGAAATGTTACTCCTAGTGGTCCAATACCTTCATGTTGCAGTGATGCAACTGGTGCTTTGATATTCAGCAACCCTTACTAAAATTGCTGAATTTATAGCCTTCCTTCCTTTAGAATGCTTGCCCTTTGCTACAATGATCAACTTACTGGTGCTTGGATATTTTCTCTTTTCAGTTTCAAAAACAAAATACTTACTGTTGATGTCTTCTCCTAAGTATCTCTACGTCATACAGATTCATCTTTGTTTTACATCCTTGAGTATCTCTACGTCATATCGATTCATCTTTGATTTACATCCTTGATGTCTATCAAAAAGTCAGCATTGTAGTTCTGGAGTCTGTTTTCCAGGATGTCTAAAATGCAACAGATGCCTTAATTTTTATATGTTCTTTATGCAAAGTCCGACAATTCTTGAAGTTGAGCAATGTTCCAACATTAAGTCAAATCCCTCCTATGATATGGTCATTGTGTCTATTTTGGCTTCCGCTTAAACCTGAGTTTTGTAATTCAATAATGCATCAGTTTTTGCATGTACCTTCCTGGAAAATATGTTCTACGATAATTTTGCATCGTTCTATTCGGGGGTTTTATGCTCTAAGACTAGCCTAACTAAGATATCACTTTTGCAGAGTTACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTGGACGCGTCTGAAAGACTACTTTTGAGACCTCATCTCAAAAACAAGTTTCCTTGATGTGTATAAACTTGCTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTACTCCCTAATGTAATTGTGGTACTTGTCGCTGTAACGCTCGTTTTAACTATATGAAAATAAAGTCGTCTGCTTA</genome_strand>
        <mrna_strand>AAGCTTCATCACAACCCTCTAATGAGTCTAAAGTTCATATAGTGTATACTGAGCAACCTAAAGATCAAGAACCTGAAGAGTATCATATCAAAACCCTAACTTCTGTTCTTGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGCTGCAAAAGAGGCATTGTTATACAGTTACAAGCACGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTGGACGCGTCTGAAAGACTACTTTTGAGACCTCATCTCAAAAACAAGTTTCCTTGATGTGTATAAACTTGCTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTACTCCCTAATGTAATTGTGGTACTTATCGCTGTAACGCTCGTTTTAACTATATGAAAATAAAGTCGTCTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620246" ref_strand="+" ref_description="SGN-E620246 [70945]">
      <seq>tgaatccaaagttcatatagtgtatactgagcaacctaaagatcaagaacctgaggagtatcatatcaaaaccctaacttctgttcttggcagtgaggaggctgcaaaagaggcattgatatacagttacaagcacgcagctagtggattctcagcaaagctgactgctgagcaggtttttgagctctcaaagcaacctggagtgctgcaagttgttccaagccaaacagttcagttgcacactcgacgcgtctgaaagacaatacttgagacctcatctccaaaacaagtttccttgatgtgtataaacttgttatctatgcttgtttcaatggtgttttgaacttagattgaaagactatccctattccttaatgtaattgtggtacttatcgctgtaacgcttgttttaactatatgaaaataaaatcgtctgcttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53224" stop="56711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53524" g_stop="53616" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53617" i_stop="54663" i_length="1047">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54664" g_stop="54761" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="191" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54762" i_stop="56157" i_length="1396">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.599" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56158" g_stop="56406" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="440" r_length="249" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E620246" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53524" e_stop="53616"/>
          <exon e_start="54664" e_stop="54761"/>
          <exon e_start="56158" e_stop="56406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTCTAAAGTTCATATAGTGTATACTGAGCAACCTAAAGATCAAGAACCTGAAGAGTATCATATCAAAACCCTAACTTCTGTTCTTGGCAGGTTCGAATTATTTTTCCAATTCTATCCTTTTTTTCTGTTTTGAATTGCAATATAGGAAGATGGGGTTGTGGGTAGGTTTGGATTGACCCTGTTTCTAATCAATTTCATCAAAGATTTGATCTTTTTGTAAGATAATAAATTTGATTTTTTTTTCCATATGGGGTTGGACTTTGTCTTTGTTTTCATGCTGAATTTAGTTTTAGGGGGTTAGACTTTTTTTTTTCTGAATTCATTTTCTATATGTTTGATTATTAAGAATGTGAGAGGTTGTCTGATGGGGCTAAGGAGATGTAGAGGTTGGCCAAAGAATACTGGGTGAGGTGATTAGAATGTACATAGCGTAACTTCAGTTTATTGAGGACATGACGCACCATAGATAGGAGGTTTTGGGGGTTTGGTAGTCTGAGTGTTGTCTCTGTGCATTCCAATAGCATTAGCACTAATCTTGTGGTTTCTTGCCCTTCGATTTCTCTTAATACCTGTTGTTCTTTGCTTCGATTATTGCATTTTATGAATGCTAGGTAATGATTGCATGCTTGGACATTTCTTAAGGGAATGGTGAGGGACAAAGTGATTAGATCAACTAGTTCAAAAGTTATAGGAGGAGTAATATGATTTAAAGGATTTTGTTAGTTTATTGTTTTAAATTATAGCTCTGTTACTGCAAAAATTTATGCAATGTATACTCGAACTTTAGGAACATGTAGTGGTTCATACCAAGTTTATTTTCTGCAAGTAGTTAATTTGGACAATCAAAATTACTATCTAGTCTAATTGACTTTTGTGATCTTAATTTGAATAGCGTATGGAACTTTTCAAAGCAAACTTTCCAATATTCATTCAATCACATATTGTAGTAATGAATGAATAACGGTTTCAAGATCATTTGTTGTATTCTTTGGTGAGGAAAGAAGGGACAGAAAATGCTTGCTATCAATTATCAATTTTATGTAATTGTCATGATTATTGTACGGTAATGTATTGTATACTACAAATTTTTGGAGTAAAAATCCTGATATTCTGTGTATACTTGTGGTAATCAAAAAGTGAGGAGGCTGCAAAAGAGGCATTGTTATACAGTTACAAGCACGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAAGTAAGAATTGACTTACTACTCTTTCAGTATTATTGATTAAATTATCTTGGTATATGGTTGGTCTGTATCTTCTTGTGAGATCAGTAATTAGTATGGTGAATTTAAATATGACAGCCATAACGCTTGTCTGTTGAAGTACTTGGCATTCATGTTGAAAAGTTGAACATAGTTTTTCATGTTCAAGGGATTGTTGACAATTAAGCACATTTCTTGTTTCTTGCTAAATCTCAAATTCAAAATATGTTTTTAATTTCATCATTAATAGTTTAACCATCAGAAAATAGAGTGAGGATGTTTGTCATGAATTATGTAAGAATCGTTTGGATTTTATTTTTTTTAGCTTAAGAAAGGGGCAGGGGTTATTTTAGGACAGGTTTAATGGTTTTATATGGAGCATATTCTTGACCAAGATGGTCCACTATTGATAGGCATGGTTTCCTTTTCTTTTGTTCTTTTTTTTAATGCAATCAATACTTTCTTAGTGCTGGATTTGATAACAATAATATCTTACCACTTTAAAAAAGACTATGTGAAGAAGCACAATAGGAATGGCAATGTTAATGTAGGACTTCCAACTTTCATGAAAAGTATGAGAGGAATCATTCGTTATTGATCAATTTTCAACTTTACATGATAAAAGGACAAGAGGAATGATGTTAGGTGTACATTTTTTGGGAATAATTTTGGGAAGGAAATGCCCTGAGACAATAGGTTACTTATCAAAATATGTGTAAGTTCCTTTATTTGGAAAAATAAATTCCCAGTCATAGAAATGTTACTCCTAGTGGTCCAATACCTTCATGTTGCAGTGATGCAACTGGTGCTTTGATATTCAGCAACCCTTACTAAAATTGCTGAATTTATAGCCTTCCTTCCTTTAGAATGCTTGCCCTTTGCTACAATGATCAACTTACTGGTGCTTGGATATTTTCTCTTTTCAGTTTCAAAAACAAAATACTTACTGTTGATGTCTTCTCCTAAGTATCTCTACGTCATACAGATTCATCTTTGTTTTACATCCTTGAGTATCTCTACGTCATATCGATTCATCTTTGATTTACATCCTTGATGTCTATCAAAAAGTCAGCATTGTAGTTCTGGAGTCTGTTTTCCAGGATGTCTAAAATGCAACAGATGCCTTAATTTTTATATGTTCTTTATGCAAAGTCCGACAATTCTTGAAGTTGAGCAATGTTCCAACATTAAGTCAAATCCCTCCTATGATATGGTCATTGTGTCTATTTTGGCTTCCGCTTAAACCTGAGTTTTGTAATTCAATAATGCATCAGTTTTTGCATGTACCTTCCTGGAAAATATGTTCTACGATAATTTTGCATCGTTCTATTCGGGGGTTTTATGCTCTAAGACTAGCCTAACTAAGATATCACTTTTGCAGAGTTACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTGGACGCGTCTGAAAGACTACTTTTGAGACCTCATCTCAAAAACAAGTTTCCTTGATGTGTATAAACTTGCTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTACTCCCTAATGTAATTGTGGTACTTGTCGCTGTAACGCTCGTTTTAACTATATGAAAATAAAGTCGTCTGCTTA</genome_strand>
        <mrna_strand>TGAATCCAAAGTTCATATAGTGTATACTGAGCAACCTAAAGATCAAGAACCTGAGGAGTATCATATCAAAACCCTAACTTCTGTTCTTGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGCTGCAAAAGAGGCATTGATATACAGTTACAAGCACGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTTTGAGCTCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTCGACGCGTCTGAAAGACAATACTTGAGACCTCATCTCCAAAACAAGTTTCCTTGATGTGTATAAACTTGTTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTATTCCTTAATGTAATTGTGGTACTTATCGCTGTAACGCTTGTTTTAACTATATGAAAATAAAATCGTCTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619153" ref_strand="+" ref_description="SGN-E619153 [69839]">
      <seq>ctaacttctgttcttggcagtgaggaggctgcaaaagaggcattgatatacagttacaagcatgcagctagtggattctcagcaaagctgactgctgagcaggtttctgagctctcaaagcaacctggagtgctgcaagttgttccaagccaaacagttcagttacacactcgacgcgtctgaaagacaatacttgagacctcatctccaaaacaagtttccttgatgtgtataaacttgttatctatgcttgtttcaatggtgttttgaacttagattgaaagactatccctattccctaatgtaattgtggtacttatcgctgtaacgcttgttttaactgtatgaaaataaaattgtccgcttaatatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53297" stop="56710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53597" g_stop="53616" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53617" i_stop="54663" i_length="1047">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54664" g_stop="54761" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="118" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54762" i_stop="56157" i_length="1396">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56158" g_stop="56406" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="367" r_length="249" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="373" polyA_stop="382"/>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E619153" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E619153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53597" e_stop="53616"/>
          <exon e_start="54664" e_stop="54761"/>
          <exon e_start="56158" e_stop="56406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACTTCTGTTCTTGGCAGGTTCGAATTATTTTTCCAATTCTATCCTTTTTTTCTGTTTTGAATTGCAATATAGGAAGATGGGGTTGTGGGTAGGTTTGGATTGACCCTGTTTCTAATCAATTTCATCAAAGATTTGATCTTTTTGTAAGATAATAAATTTGATTTTTTTTTCCATATGGGGTTGGACTTTGTCTTTGTTTTCATGCTGAATTTAGTTTTAGGGGGTTAGACTTTTTTTTTTCTGAATTCATTTTCTATATGTTTGATTATTAAGAATGTGAGAGGTTGTCTGATGGGGCTAAGGAGATGTAGAGGTTGGCCAAAGAATACTGGGTGAGGTGATTAGAATGTACATAGCGTAACTTCAGTTTATTGAGGACATGACGCACCATAGATAGGAGGTTTTGGGGGTTTGGTAGTCTGAGTGTTGTCTCTGTGCATTCCAATAGCATTAGCACTAATCTTGTGGTTTCTTGCCCTTCGATTTCTCTTAATACCTGTTGTTCTTTGCTTCGATTATTGCATTTTATGAATGCTAGGTAATGATTGCATGCTTGGACATTTCTTAAGGGAATGGTGAGGGACAAAGTGATTAGATCAACTAGTTCAAAAGTTATAGGAGGAGTAATATGATTTAAAGGATTTTGTTAGTTTATTGTTTTAAATTATAGCTCTGTTACTGCAAAAATTTATGCAATGTATACTCGAACTTTAGGAACATGTAGTGGTTCATACCAAGTTTATTTTCTGCAAGTAGTTAATTTGGACAATCAAAATTACTATCTAGTCTAATTGACTTTTGTGATCTTAATTTGAATAGCGTATGGAACTTTTCAAAGCAAACTTTCCAATATTCATTCAATCACATATTGTAGTAATGAATGAATAACGGTTTCAAGATCATTTGTTGTATTCTTTGGTGAGGAAAGAAGGGACAGAAAATGCTTGCTATCAATTATCAATTTTATGTAATTGTCATGATTATTGTACGGTAATGTATTGTATACTACAAATTTTTGGAGTAAAAATCCTGATATTCTGTGTATACTTGTGGTAATCAAAAAGTGAGGAGGCTGCAAAAGAGGCATTGTTATACAGTTACAAGCACGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAAGTAAGAATTGACTTACTACTCTTTCAGTATTATTGATTAAATTATCTTGGTATATGGTTGGTCTGTATCTTCTTGTGAGATCAGTAATTAGTATGGTGAATTTAAATATGACAGCCATAACGCTTGTCTGTTGAAGTACTTGGCATTCATGTTGAAAAGTTGAACATAGTTTTTCATGTTCAAGGGATTGTTGACAATTAAGCACATTTCTTGTTTCTTGCTAAATCTCAAATTCAAAATATGTTTTTAATTTCATCATTAATAGTTTAACCATCAGAAAATAGAGTGAGGATGTTTGTCATGAATTATGTAAGAATCGTTTGGATTTTATTTTTTTTAGCTTAAGAAAGGGGCAGGGGTTATTTTAGGACAGGTTTAATGGTTTTATATGGAGCATATTCTTGACCAAGATGGTCCACTATTGATAGGCATGGTTTCCTTTTCTTTTGTTCTTTTTTTTAATGCAATCAATACTTTCTTAGTGCTGGATTTGATAACAATAATATCTTACCACTTTAAAAAAGACTATGTGAAGAAGCACAATAGGAATGGCAATGTTAATGTAGGACTTCCAACTTTCATGAAAAGTATGAGAGGAATCATTCGTTATTGATCAATTTTCAACTTTACATGATAAAAGGACAAGAGGAATGATGTTAGGTGTACATTTTTTGGGAATAATTTTGGGAAGGAAATGCCCTGAGACAATAGGTTACTTATCAAAATATGTGTAAGTTCCTTTATTTGGAAAAATAAATTCCCAGTCATAGAAATGTTACTCCTAGTGGTCCAATACCTTCATGTTGCAGTGATGCAACTGGTGCTTTGATATTCAGCAACCCTTACTAAAATTGCTGAATTTATAGCCTTCCTTCCTTTAGAATGCTTGCCCTTTGCTACAATGATCAACTTACTGGTGCTTGGATATTTTCTCTTTTCAGTTTCAAAAACAAAATACTTACTGTTGATGTCTTCTCCTAAGTATCTCTACGTCATACAGATTCATCTTTGTTTTACATCCTTGAGTATCTCTACGTCATATCGATTCATCTTTGATTTACATCCTTGATGTCTATCAAAAAGTCAGCATTGTAGTTCTGGAGTCTGTTTTCCAGGATGTCTAAAATGCAACAGATGCCTTAATTTTTATATGTTCTTTATGCAAAGTCCGACAATTCTTGAAGTTGAGCAATGTTCCAACATTAAGTCAAATCCCTCCTATGATATGGTCATTGTGTCTATTTTGGCTTCCGCTTAAACCTGAGTTTTGTAATTCAATAATGCATCAGTTTTTGCATGTACCTTCCTGGAAAATATGTTCTACGATAATTTTGCATCGTTCTATTCGGGGGTTTTATGCTCTAAGACTAGCCTAACTAAGATATCACTTTTGCAGAGTTACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTGGACGCGTCTGAAAGACTACTTTTGAGACCTCATCTCAAAAACAAGTTTCCTTGATGTGTATAAACTTGCTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTACTCCCTAATGTAATTGTGGTACTTGTCGCTGTAACGCTCGTTTTAACTATATGAAAATAAAGTCGTCTGCTTA</genome_strand>
        <mrna_strand>CTAACTTCTGTTCTTGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGCTGCAAAAGAGGCATTGATATACAGTTACAAGCATGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTACACACTCGACGCGTCTGAAAGACAATACTTGAGACCTCATCTCCAAAACAAGTTTCCTTGATGTGTATAAACTTGTTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTATTCCCTAATGTAATTGTGGTACTTATCGCTGTAACGCTTGTTTTAACTGTATGAAAATAAAATTGTCCGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586751" ref_strand="+" ref_description="SGN-E586751 [75585]">
      <seq>ctgcaaaagaggcattgatatacagttacaagcatgcagctagtggattctcagcaaagctgactgctgagcaggtttttgagctctcaaagcaacctggagtgctgcaagttgttccaagccaaacagttcagttgcacactcgacgcgtctgaaagacaatacttgagacctcatctccaaaacaagtttccttgatgtgtatacacttgttatctatgcttgtttcaatggtattttgaacttagattgaaagactatccctattccctaatgtaattgtggtacttatcgctgtaacgcttgttttaactgtatgaaaataaaattgtccgcttaatatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54372" stop="56710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54672" g_stop="54761" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54762" i_stop="56157" i_length="1396">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.599" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56158" g_stop="56406" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="339" r_length="249" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="345" polyA_stop="355"/>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E586751" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E586751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54672" e_stop="54761"/>
          <exon e_start="56158" e_stop="56406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAAAAGAGGCATTGTTATACAGTTACAAGCACGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAAGTAAGAATTGACTTACTACTCTTTCAGTATTATTGATTAAATTATCTTGGTATATGGTTGGTCTGTATCTTCTTGTGAGATCAGTAATTAGTATGGTGAATTTAAATATGACAGCCATAACGCTTGTCTGTTGAAGTACTTGGCATTCATGTTGAAAAGTTGAACATAGTTTTTCATGTTCAAGGGATTGTTGACAATTAAGCACATTTCTTGTTTCTTGCTAAATCTCAAATTCAAAATATGTTTTTAATTTCATCATTAATAGTTTAACCATCAGAAAATAGAGTGAGGATGTTTGTCATGAATTATGTAAGAATCGTTTGGATTTTATTTTTTTTAGCTTAAGAAAGGGGCAGGGGTTATTTTAGGACAGGTTTAATGGTTTTATATGGAGCATATTCTTGACCAAGATGGTCCACTATTGATAGGCATGGTTTCCTTTTCTTTTGTTCTTTTTTTTAATGCAATCAATACTTTCTTAGTGCTGGATTTGATAACAATAATATCTTACCACTTTAAAAAAGACTATGTGAAGAAGCACAATAGGAATGGCAATGTTAATGTAGGACTTCCAACTTTCATGAAAAGTATGAGAGGAATCATTCGTTATTGATCAATTTTCAACTTTACATGATAAAAGGACAAGAGGAATGATGTTAGGTGTACATTTTTTGGGAATAATTTTGGGAAGGAAATGCCCTGAGACAATAGGTTACTTATCAAAATATGTGTAAGTTCCTTTATTTGGAAAAATAAATTCCCAGTCATAGAAATGTTACTCCTAGTGGTCCAATACCTTCATGTTGCAGTGATGCAACTGGTGCTTTGATATTCAGCAACCCTTACTAAAATTGCTGAATTTATAGCCTTCCTTCCTTTAGAATGCTTGCCCTTTGCTACAATGATCAACTTACTGGTGCTTGGATATTTTCTCTTTTCAGTTTCAAAAACAAAATACTTACTGTTGATGTCTTCTCCTAAGTATCTCTACGTCATACAGATTCATCTTTGTTTTACATCCTTGAGTATCTCTACGTCATATCGATTCATCTTTGATTTACATCCTTGATGTCTATCAAAAAGTCAGCATTGTAGTTCTGGAGTCTGTTTTCCAGGATGTCTAAAATGCAACAGATGCCTTAATTTTTATATGTTCTTTATGCAAAGTCCGACAATTCTTGAAGTTGAGCAATGTTCCAACATTAAGTCAAATCCCTCCTATGATATGGTCATTGTGTCTATTTTGGCTTCCGCTTAAACCTGAGTTTTGTAATTCAATAATGCATCAGTTTTTGCATGTACCTTCCTGGAAAATATGTTCTACGATAATTTTGCATCGTTCTATTCGGGGGTTTTATGCTCTAAGACTAGCCTAACTAAGATATCACTTTTGCAGAGTTACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTGGACGCGTCTGAAAGACTACTTTTGAGACCTCATCTCAAAAACAAGTTTCCTTGATGTGTATAAACTTGCTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTACTCCCTAATGTAATTGTGGTACTTGTCGCTGTAACGCTCGTTTTAACTATATGAAAATAAAGTCGTCTGCTTA</genome_strand>
        <mrna_strand>CTGCAAAAGAGGCATTGATATACAGTTACAAGCATGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTTTGAGCTCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTCGACGCGTCTGAAAGACAATACTTGAGACCTCATCTCCAAAACAAGTTTCCTTGATGTGTATACACTTGTTATCTATGCTTGTTTCAATGGTATTTTGAACTTAGATTGAAAGACTATCCCTATTCCCTAATGTAATTGTGGTACTTATCGCTGTAACGCTTGTTTTAACTGTATGAAAATAAAATTGTCCGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E607126" ref_strand="+" ref_description="SGN-E607126 [23085]">
      <seq>gcaaaagaggcattgatatacagttacaagcatgcagctagtggattctcagcaaagctgactgctgagcaggtttctgagctctcaaagcaacctggagtgctgcaagttgttccaagccaaacagttcagttacacactcgacgcgtctgaaagacaatacttgagacctcatctccaaaacaagtttccttgatgtgtataaacttgttatctatgcttgtttcaatggtgttttgaacttagattgaaagactatccctattccctaatgtaattgtggtacttatcgctgtaacgcttgttttaactgtatgaaaataaaattgtccgcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54374" stop="56711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54674" g_stop="54761" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54762" i_stop="56157" i_length="1396">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56158" g_stop="56406" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="337" r_length="249" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E607126" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E607126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54674" e_stop="54761"/>
          <exon e_start="56158" e_stop="56406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAAGAGGCATTGTTATACAGTTACAAGCACGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAAGTAAGAATTGACTTACTACTCTTTCAGTATTATTGATTAAATTATCTTGGTATATGGTTGGTCTGTATCTTCTTGTGAGATCAGTAATTAGTATGGTGAATTTAAATATGACAGCCATAACGCTTGTCTGTTGAAGTACTTGGCATTCATGTTGAAAAGTTGAACATAGTTTTTCATGTTCAAGGGATTGTTGACAATTAAGCACATTTCTTGTTTCTTGCTAAATCTCAAATTCAAAATATGTTTTTAATTTCATCATTAATAGTTTAACCATCAGAAAATAGAGTGAGGATGTTTGTCATGAATTATGTAAGAATCGTTTGGATTTTATTTTTTTTAGCTTAAGAAAGGGGCAGGGGTTATTTTAGGACAGGTTTAATGGTTTTATATGGAGCATATTCTTGACCAAGATGGTCCACTATTGATAGGCATGGTTTCCTTTTCTTTTGTTCTTTTTTTTAATGCAATCAATACTTTCTTAGTGCTGGATTTGATAACAATAATATCTTACCACTTTAAAAAAGACTATGTGAAGAAGCACAATAGGAATGGCAATGTTAATGTAGGACTTCCAACTTTCATGAAAAGTATGAGAGGAATCATTCGTTATTGATCAATTTTCAACTTTACATGATAAAAGGACAAGAGGAATGATGTTAGGTGTACATTTTTTGGGAATAATTTTGGGAAGGAAATGCCCTGAGACAATAGGTTACTTATCAAAATATGTGTAAGTTCCTTTATTTGGAAAAATAAATTCCCAGTCATAGAAATGTTACTCCTAGTGGTCCAATACCTTCATGTTGCAGTGATGCAACTGGTGCTTTGATATTCAGCAACCCTTACTAAAATTGCTGAATTTATAGCCTTCCTTCCTTTAGAATGCTTGCCCTTTGCTACAATGATCAACTTACTGGTGCTTGGATATTTTCTCTTTTCAGTTTCAAAAACAAAATACTTACTGTTGATGTCTTCTCCTAAGTATCTCTACGTCATACAGATTCATCTTTGTTTTACATCCTTGAGTATCTCTACGTCATATCGATTCATCTTTGATTTACATCCTTGATGTCTATCAAAAAGTCAGCATTGTAGTTCTGGAGTCTGTTTTCCAGGATGTCTAAAATGCAACAGATGCCTTAATTTTTATATGTTCTTTATGCAAAGTCCGACAATTCTTGAAGTTGAGCAATGTTCCAACATTAAGTCAAATCCCTCCTATGATATGGTCATTGTGTCTATTTTGGCTTCCGCTTAAACCTGAGTTTTGTAATTCAATAATGCATCAGTTTTTGCATGTACCTTCCTGGAAAATATGTTCTACGATAATTTTGCATCGTTCTATTCGGGGGTTTTATGCTCTAAGACTAGCCTAACTAAGATATCACTTTTGCAGAGTTACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTGGACGCGTCTGAAAGACTACTTTTGAGACCTCATCTCAAAAACAAGTTTCCTTGATGTGTATAAACTTGCTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTACTCCCTAATGTAATTGTGGTACTTGTCGCTGTAACGCTCGTTTTAACTATATGAAAATAAAGTCGTCTGCTTA</genome_strand>
        <mrna_strand>GCAAAAGAGGCATTGATATACAGTTACAAGCATGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTACACACTCGACGCGTCTGAAAGACAATACTTGAGACCTCATCTCCAAAACAAGTTTCCTTGATGTGTATAAACTTGTTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTATTCCCTAATGTAATTGTGGTACTTATCGCTGTAACGCTTGTTTTAACTGTATGAAAATAAAATTGTCCGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690213" ref_strand="+" ref_description="SGN-E690213 [LH_Ea02O19]">
      <seq>cgctgttatacagttacaagcatgcagctagtggattctcagcaaagctgactgctgagcaggtttctgagctctcaaagttacctggagtgctgcaagttgttccaagccaaacagttcagttgcacactggacgcttctgaaagacaacacttgagacctcatctcaaaaataagtttccttgatgtgtataaacttgctatctatgcttgtttcaatggtgttttgaacttagattgaaagactatccctactccctaatgtaattgtggtacttatcgctgtaacgctcgttctaactatataaaaataaagtcgtctgcttaatatccttgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54387" stop="56723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54684" g_stop="54761" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54762" i_stop="56157" i_length="1396">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56158" g_stop="56426" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="347" r_length="269" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E690213" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54684" e_stop="54761"/>
          <exon e_start="56158" e_stop="56426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGTTATACAGTTACAAGCACGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAAGTAAGAATTGACTTACTACTCTTTCAGTATTATTGATTAAATTATCTTGGTATATGGTTGGTCTGTATCTTCTTGTGAGATCAGTAATTAGTATGGTGAATTTAAATATGACAGCCATAACGCTTGTCTGTTGAAGTACTTGGCATTCATGTTGAAAAGTTGAACATAGTTTTTCATGTTCAAGGGATTGTTGACAATTAAGCACATTTCTTGTTTCTTGCTAAATCTCAAATTCAAAATATGTTTTTAATTTCATCATTAATAGTTTAACCATCAGAAAATAGAGTGAGGATGTTTGTCATGAATTATGTAAGAATCGTTTGGATTTTATTTTTTTTAGCTTAAGAAAGGGGCAGGGGTTATTTTAGGACAGGTTTAATGGTTTTATATGGAGCATATTCTTGACCAAGATGGTCCACTATTGATAGGCATGGTTTCCTTTTCTTTTGTTCTTTTTTTTAATGCAATCAATACTTTCTTAGTGCTGGATTTGATAACAATAATATCTTACCACTTTAAAAAAGACTATGTGAAGAAGCACAATAGGAATGGCAATGTTAATGTAGGACTTCCAACTTTCATGAAAAGTATGAGAGGAATCATTCGTTATTGATCAATTTTCAACTTTACATGATAAAAGGACAAGAGGAATGATGTTAGGTGTACATTTTTTGGGAATAATTTTGGGAAGGAAATGCCCTGAGACAATAGGTTACTTATCAAAATATGTGTAAGTTCCTTTATTTGGAAAAATAAATTCCCAGTCATAGAAATGTTACTCCTAGTGGTCCAATACCTTCATGTTGCAGTGATGCAACTGGTGCTTTGATATTCAGCAACCCTTACTAAAATTGCTGAATTTATAGCCTTCCTTCCTTTAGAATGCTTGCCCTTTGCTACAATGATCAACTTACTGGTGCTTGGATATTTTCTCTTTTCAGTTTCAAAAACAAAATACTTACTGTTGATGTCTTCTCCTAAGTATCTCTACGTCATACAGATTCATCTTTGTTTTACATCCTTGAGTATCTCTACGTCATATCGATTCATCTTTGATTTACATCCTTGATGTCTATCAAAAAGTCAGCATTGTAGTTCTGGAGTCTGTTTTCCAGGATGTCTAAAATGCAACAGATGCCTTAATTTTTATATGTTCTTTATGCAAAGTCCGACAATTCTTGAAGTTGAGCAATGTTCCAACATTAAGTCAAATCCCTCCTATGATATGGTCATTGTGTCTATTTTGGCTTCCGCTTAAACCTGAGTTTTGTAATTCAATAATGCATCAGTTTTTGCATGTACCTTCCTGGAAAATATGTTCTACGATAATTTTGCATCGTTCTATTCGGGGGTTTTATGCTCTAAGACTAGCCTAACTAAGATATCACTTTTGCAGAGTTACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTGGACGCGTCTGAAAGACTACTTTTGAGACCTCATCTCAAAAACAAGTTTCCTTGATGTGTATAAACTTGCTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTACTCCCTAATGTAATTGTGGTACTTGTCGCTGTAACGCTCGTTTTAACTATATGAAAATAAAGTCGTCTGCTTAATATACTTGTACAAATAGTT</genome_strand>
        <mrna_strand>CGCTGTTATACAGTTACAAGCATGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTGGACGCTTCTGAAAGACAACACTTGAGACCTCATCTCAAAAATAAGTTTCCTTGATGTGTATAAACTTGCTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTACTCCCTAATGTAATTGTGGTACTTATCGCTGTAACGCTCGTTCTAACTATATAAAAATAAAGTCGTCTGCTTAATATCCTTGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E607032" ref_strand="+" ref_description="SGN-E607032 [22989]">
      <seq>ttgatatacagttacaagcatgcagctagtggattctcagcaaagctgactgctgagcaggtttctgagctctcaaagcaacctgggagtgctgcaagttgttccaagccaaacagttcagttacacactcgacgcgtctgaaagacaatacttgagacctcatctccaaaacaagtttccttggatgtgtataaacttgttatctatgcttgtttcaatggtgttttgaacttagattgaaagactatccctattccctaatgtaattgtggtacttatcgctgtaacgcttgttttaactgtatgaaaataaaattgtccgcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54386" stop="56711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54686" g_stop="54761" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54762" i_stop="56157" i_length="1396">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56158" g_stop="56406" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="327" r_length="251" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E607032" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E607032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54686" e_stop="54761"/>
          <exon e_start="56158" e_stop="56406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTATACAGTTACAAGCACGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAAGTAAGAATTGACTTACTACTCTTTCAGTATTATTGATTAAATTATCTTGGTATATGGTTGGTCTGTATCTTCTTGTGAGATCAGTAATTAGTATGGTGAATTTAAATATGACAGCCATAACGCTTGTCTGTTGAAGTACTTGGCATTCATGTTGAAAAGTTGAACATAGTTTTTCATGTTCAAGGGATTGTTGACAATTAAGCACATTTCTTGTTTCTTGCTAAATCTCAAATTCAAAATATGTTTTTAATTTCATCATTAATAGTTTAACCATCAGAAAATAGAGTGAGGATGTTTGTCATGAATTATGTAAGAATCGTTTGGATTTTATTTTTTTTAGCTTAAGAAAGGGGCAGGGGTTATTTTAGGACAGGTTTAATGGTTTTATATGGAGCATATTCTTGACCAAGATGGTCCACTATTGATAGGCATGGTTTCCTTTTCTTTTGTTCTTTTTTTTAATGCAATCAATACTTTCTTAGTGCTGGATTTGATAACAATAATATCTTACCACTTTAAAAAAGACTATGTGAAGAAGCACAATAGGAATGGCAATGTTAATGTAGGACTTCCAACTTTCATGAAAAGTATGAGAGGAATCATTCGTTATTGATCAATTTTCAACTTTACATGATAAAAGGACAAGAGGAATGATGTTAGGTGTACATTTTTTGGGAATAATTTTGGGAAGGAAATGCCCTGAGACAATAGGTTACTTATCAAAATATGTGTAAGTTCCTTTATTTGGAAAAATAAATTCCCAGTCATAGAAATGTTACTCCTAGTGGTCCAATACCTTCATGTTGCAGTGATGCAACTGGTGCTTTGATATTCAGCAACCCTTACTAAAATTGCTGAATTTATAGCCTTCCTTCCTTTAGAATGCTTGCCCTTTGCTACAATGATCAACTTACTGGTGCTTGGATATTTTCTCTTTTCAGTTTCAAAAACAAAATACTTACTGTTGATGTCTTCTCCTAAGTATCTCTACGTCATACAGATTCATCTTTGTTTTACATCCTTGAGTATCTCTACGTCATATCGATTCATCTTTGATTTACATCCTTGATGTCTATCAAAAAGTCAGCATTGTAGTTCTGGAGTCTGTTTTCCAGGATGTCTAAAATGCAACAGATGCCTTAATTTTTATATGTTCTTTATGCAAAGTCCGACAATTCTTGAAGTTGAGCAATGTTCCAACATTAAGTCAAATCCCTCCTATGATATGGTCATTGTGTCTATTTTGGCTTCCGCTTAAACCTGAGTTTTGTAATTCAATAATGCATCAGTTTTTGCATGTACCTTCCTGGAAAATATGTTCTACGATAATTTTGCATCGTTCTATTCGGGGGTTTTATGCTCTAAGACTAGCCTAACTAAGATATCACTTTTGCAGAGTTACCTGG-AGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTGGACGCGTCTGAAAGACTACTTTTGAGACCTCATCTCAAAAACAAGTTTCCTT-GATGTGTATAAACTTGCTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTACTCCCTAATGTAATTGTGGTACTTGTCGCTGTAACGCTCGTTTTAACTATATGAAAATAAAGTCGTCTGCTTA</genome_strand>
        <mrna_strand>TTGATATACAGTTACAAGCATGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACCTGGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTACACACTCGACGCGTCTGAAAGACAATACTTGAGACCTCATCTCCAAAACAAGTTTCCTTGGATGTGTATAAACTTGTTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTATTCCCTAATGTAATTGTGGTACTTATCGCTGTAACGCTTGTTTTAACTGTATGAAAATAAAATTGTCCGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596106" ref_strand="+" ref_description="SGN-E596106 [39393]">
      <seq>gttacaagcacgcagctagtggattctcagcaaagctgactgctgagcaggtttttgagctctcaaagcaacctggagtgctgcaagttgttccaagccaaacagttcagttgcacactcgacgcgtctgaaagacaatacttgagacctcatctccaaaacaagtttccttgatgtgtataaacttgttatctatgcttgtttcaatggtgttttgaacttagattgaaagactatccctattccttaatgtaattgtggtacttatcgctgtaacgcttgttttaactatatgaaaataaaatcgtctgcttaatatccttgtacagataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54396" stop="56723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54696" g_stop="54761" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54762" i_stop="56157" i_length="1396">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.599" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56158" g_stop="56406" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="315" r_length="249" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="330" polyA_stop="344"/>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E596106" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E596106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54696" e_stop="54761"/>
          <exon e_start="56158" e_stop="56406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACAAGCACGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAAGTAAGAATTGACTTACTACTCTTTCAGTATTATTGATTAAATTATCTTGGTATATGGTTGGTCTGTATCTTCTTGTGAGATCAGTAATTAGTATGGTGAATTTAAATATGACAGCCATAACGCTTGTCTGTTGAAGTACTTGGCATTCATGTTGAAAAGTTGAACATAGTTTTTCATGTTCAAGGGATTGTTGACAATTAAGCACATTTCTTGTTTCTTGCTAAATCTCAAATTCAAAATATGTTTTTAATTTCATCATTAATAGTTTAACCATCAGAAAATAGAGTGAGGATGTTTGTCATGAATTATGTAAGAATCGTTTGGATTTTATTTTTTTTAGCTTAAGAAAGGGGCAGGGGTTATTTTAGGACAGGTTTAATGGTTTTATATGGAGCATATTCTTGACCAAGATGGTCCACTATTGATAGGCATGGTTTCCTTTTCTTTTGTTCTTTTTTTTAATGCAATCAATACTTTCTTAGTGCTGGATTTGATAACAATAATATCTTACCACTTTAAAAAAGACTATGTGAAGAAGCACAATAGGAATGGCAATGTTAATGTAGGACTTCCAACTTTCATGAAAAGTATGAGAGGAATCATTCGTTATTGATCAATTTTCAACTTTACATGATAAAAGGACAAGAGGAATGATGTTAGGTGTACATTTTTTGGGAATAATTTTGGGAAGGAAATGCCCTGAGACAATAGGTTACTTATCAAAATATGTGTAAGTTCCTTTATTTGGAAAAATAAATTCCCAGTCATAGAAATGTTACTCCTAGTGGTCCAATACCTTCATGTTGCAGTGATGCAACTGGTGCTTTGATATTCAGCAACCCTTACTAAAATTGCTGAATTTATAGCCTTCCTTCCTTTAGAATGCTTGCCCTTTGCTACAATGATCAACTTACTGGTGCTTGGATATTTTCTCTTTTCAGTTTCAAAAACAAAATACTTACTGTTGATGTCTTCTCCTAAGTATCTCTACGTCATACAGATTCATCTTTGTTTTACATCCTTGAGTATCTCTACGTCATATCGATTCATCTTTGATTTACATCCTTGATGTCTATCAAAAAGTCAGCATTGTAGTTCTGGAGTCTGTTTTCCAGGATGTCTAAAATGCAACAGATGCCTTAATTTTTATATGTTCTTTATGCAAAGTCCGACAATTCTTGAAGTTGAGCAATGTTCCAACATTAAGTCAAATCCCTCCTATGATATGGTCATTGTGTCTATTTTGGCTTCCGCTTAAACCTGAGTTTTGTAATTCAATAATGCATCAGTTTTTGCATGTACCTTCCTGGAAAATATGTTCTACGATAATTTTGCATCGTTCTATTCGGGGGTTTTATGCTCTAAGACTAGCCTAACTAAGATATCACTTTTGCAGAGTTACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTGGACGCGTCTGAAAGACTACTTTTGAGACCTCATCTCAAAAACAAGTTTCCTTGATGTGTATAAACTTGCTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTACTCCCTAATGTAATTGTGGTACTTGTCGCTGTAACGCTCGTTTTAACTATATGAAAATAAAGTCGTCTGCTTA</genome_strand>
        <mrna_strand>GTTACAAGCACGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTTTGAGCTCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTCGACGCGTCTGAAAGACAATACTTGAGACCTCATCTCCAAAACAAGTTTCCTTGATGTGTATAAACTTGTTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTATTCCTTAATGTAATTGTGGTACTTATCGCTGTAACGCTTGTTTTAACTATATGAAAATAAAATCGTCTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612804" ref_strand="+" ref_description="SGN-E612804 [62571]">
      <seq>gtggattctcagcaaagctgactgctgagcaggtttttgagctctcaaagcaacctggagtgctgcaagttgttccaagccaaacagttcagttgcacactcgacgcgtctgaaagacaatacttgagacctcatctccaaaacaagtttccttgatgtgtataaacttgttatctatgcttgtttcaatggtgttttgaacttagattgaaagactatccctattccttaatgtaattgtggtacttatcgctgtaacgcttgttttaactatatgaaaataaaatcgtctgcttaatatccttgtacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54414" stop="56723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54714" g_stop="54761" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54762" i_stop="56157" i_length="1396">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.599" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56158" g_stop="56428" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="319" r_length="271" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E612804" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54714" e_stop="54761"/>
          <exon e_start="56158" e_stop="56428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAAGTAAGAATTGACTTACTACTCTTTCAGTATTATTGATTAAATTATCTTGGTATATGGTTGGTCTGTATCTTCTTGTGAGATCAGTAATTAGTATGGTGAATTTAAATATGACAGCCATAACGCTTGTCTGTTGAAGTACTTGGCATTCATGTTGAAAAGTTGAACATAGTTTTTCATGTTCAAGGGATTGTTGACAATTAAGCACATTTCTTGTTTCTTGCTAAATCTCAAATTCAAAATATGTTTTTAATTTCATCATTAATAGTTTAACCATCAGAAAATAGAGTGAGGATGTTTGTCATGAATTATGTAAGAATCGTTTGGATTTTATTTTTTTTAGCTTAAGAAAGGGGCAGGGGTTATTTTAGGACAGGTTTAATGGTTTTATATGGAGCATATTCTTGACCAAGATGGTCCACTATTGATAGGCATGGTTTCCTTTTCTTTTGTTCTTTTTTTTAATGCAATCAATACTTTCTTAGTGCTGGATTTGATAACAATAATATCTTACCACTTTAAAAAAGACTATGTGAAGAAGCACAATAGGAATGGCAATGTTAATGTAGGACTTCCAACTTTCATGAAAAGTATGAGAGGAATCATTCGTTATTGATCAATTTTCAACTTTACATGATAAAAGGACAAGAGGAATGATGTTAGGTGTACATTTTTTGGGAATAATTTTGGGAAGGAAATGCCCTGAGACAATAGGTTACTTATCAAAATATGTGTAAGTTCCTTTATTTGGAAAAATAAATTCCCAGTCATAGAAATGTTACTCCTAGTGGTCCAATACCTTCATGTTGCAGTGATGCAACTGGTGCTTTGATATTCAGCAACCCTTACTAAAATTGCTGAATTTATAGCCTTCCTTCCTTTAGAATGCTTGCCCTTTGCTACAATGATCAACTTACTGGTGCTTGGATATTTTCTCTTTTCAGTTTCAAAAACAAAATACTTACTGTTGATGTCTTCTCCTAAGTATCTCTACGTCATACAGATTCATCTTTGTTTTACATCCTTGAGTATCTCTACGTCATATCGATTCATCTTTGATTTACATCCTTGATGTCTATCAAAAAGTCAGCATTGTAGTTCTGGAGTCTGTTTTCCAGGATGTCTAAAATGCAACAGATGCCTTAATTTTTATATGTTCTTTATGCAAAGTCCGACAATTCTTGAAGTTGAGCAATGTTCCAACATTAAGTCAAATCCCTCCTATGATATGGTCATTGTGTCTATTTTGGCTTCCGCTTAAACCTGAGTTTTGTAATTCAATAATGCATCAGTTTTTGCATGTACCTTCCTGGAAAATATGTTCTACGATAATTTTGCATCGTTCTATTCGGGGGTTTTATGCTCTAAGACTAGCCTAACTAAGATATCACTTTTGCAGAGTTACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTGGACGCGTCTGAAAGACTACTTTTGAGACCTCATCTCAAAAACAAGTTTCCTTGATGTGTATAAACTTGCTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTACTCCCTAATGTAATTGTGGTACTTGTCGCTGTAACGCTCGTTTTAACTATATGAAAATAAAGTCGTCTGCTTAATATACTTGTACAAATAGTTGT</genome_strand>
        <mrna_strand>GTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTTTGAGCTCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTCGACGCGTCTGAAAGACAATACTTGAGACCTCATCTCCAAAACAAGTTTCCTTGATGTGTATAAACTTGTTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTATTCCTTAATGTAATTGTGGTACTTATCGCTGTAACGCTTGTTTTAACTATATGAAAATAAAATCGTCTGCTTAATATCCTTGTACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596486" ref_strand="-" ref_description="SGN-E596486 [39969]">
      <seq>gcacactcgacgcgtctgaaagacaatacttgagacctcatctccaaaacaagtttccttgatgtgtatacacttgttatctatgcttgtttcaatggtattttgaacttagattgaaagactatccctattccctaatgtaattgtggtacttatcgctgtaacgcttgttttaactgtatgaacataaaattgtccgcttaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55904" stop="56711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56204" g_stop="56406" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="204" polyA_stop="221"/>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E596486" ref_strand="-">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>203</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E596486" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56204" e_stop="56406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACACTGGACGCGTCTGAAAGACTACTTTTGAGACCTCATCTCAAAAACAAGTTTCCTTGATGTGTATAAACTTGCTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTACTCCCTAATGTAATTGTGGTACTTGTCGCTGTAACGCTCGTTTTAACTATATGAAAATAAAGTCGTCTGCTTA</genome_strand>
        <mrna_strand>GCACACTCGACGCGTCTGAAAGACAATACTTGAGACCTCATCTCCAAAACAAGTTTCCTTGATGTGTATACACTTGTTATCTATGCTTGTTTCAATGGTATTTTGAACTTAGATTGAAAGACTATCCCTATTCCCTAATGTAATTGTGGTACTTATCGCTGTAACGCTTGTTTTAACTGTATGAACATAAAATTGTCCGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419575" ref_strand="+" ref_description="SGN-E419575 [STM-29-J2]">
      <seq>aagaaacctctcactctccacaatggcaaccctttccctgtgttctacatcttccccctcaacagcactttccaagaaccaaactttcctaaacaccctttctgttcccaaagcaaattccaatgttacttttctatctcactcattttcctctctcaatctccgtttctccaagcccaattctttatcctcttttgtacctaaatactctgaatctgaagctccagtagctgaaattgaagctgacccagaagagcctgttgcaaccccagttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtttttcctgggaggtatatctacacccagaggcttaaaggagcaaatgtcaatgacaaaattatcctaaacaaggtgttactagtgggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccatgctgttgttgaagagcagttgaaagataagaaggttatcgtcttcaagtataagaagaaaaagaactacagaaggaacattggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61969" stop="65395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62249" g_stop="62565" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="409" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="0.96"/>
            <acceptor a_prob="0.731" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64593" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="511" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64686" g_stop="64760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="586" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65031" g_stop="65095" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="651" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E419575" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62249" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64593"/>
          <exon e_start="64686" e_stop="64760"/>
          <exon e_start="65031" e_stop="65095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACCTCTCACTCTCTAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCC---T---------GTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGC</genome_strand>
        <mrna_strand>AAGAAACCTCTCACTCTC-CACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTCCTAAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCTAAATACTCTGAATCTGAAGCTCCAGTAGCTGAAATTGAAGCTGACCCAGAAGAGCCTGTTGCAACCCCAGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTTTTTCCTGGGAGGTATATCTACACCCAGAGGCTTAAAGGAGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTAGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCATGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAACATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444422" ref_strand="+" ref_description="SGN-E444422 [cSTA-42-J8]">
      <seq>aagaaacctctcactctccaacaatggcaaccctttccctgtgttctacatcttccccctcaacagcactttccaagaaccaaactttcctaaacaccctttctgttcccaaagcaaattccaatgttacttttctatctcactcattttcctctctcaatctccgtttctccaagcccaattctttatcctcttttgtacctaaatactctgaatctgaagctccagtagctgaaattgaagctgacccagaagagcctgttgcaaccccagttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtttttcctgggaggtatatctacacccagaggcttaaaggagcaaatgtcaatgacaaaattatcctaaacaaggtgttactagtgggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccatgctgttgttgaagagcagttgaaagataagaaggttatcgtcttcaagtataagaagaaaaagaactacagaaggaacattggtcacagacagccaattactcggataagaataatgggcattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61950" stop="65363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62249" g_stop="62565" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.899"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="410" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="0.96"/>
            <acceptor a_prob="0.731" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64593" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="512" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64686" g_stop="64760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="587" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65031" g_stop="65063" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="620" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E444422" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62249" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64593"/>
          <exon e_start="64686" e_stop="64760"/>
          <exon e_start="65031" e_stop="65063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACCTCTCACTCTCTAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCC---T---------GTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACT</genome_strand>
        <mrna_strand>AAGAAACCTCTCACTCTCCAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTCCTAAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCTAAATACTCTGAATCTGAAGCTCCAGTAGCTGAAATTGAAGCTGACCCAGAAGAGCCTGTTGCAACCCCAGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTTTTTCCTGGGAGGTATATCTACACCCAGAGGCTTAAAGGAGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTAGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCATGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAACATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290157" ref_strand="+" ref_description="SGN-E290157 [cLET-5-A13]">
      <seq>acctctcactctctaacaatggcaaccctttccctgtgttctacatcttccccctcaacagcactttccaagaaccaaacttttcttaacaccctttctgttcccaaagcaaattccaatgttacttttctatctcactcattttcctctctcaatctccgtttctccaagcccaattctttatcctcttttgtacccaaatactcagaatctgaagctccagtagctgaagttgaagctgaccaagaagagcctgttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtttttcctgggcggtatatctacacccagaggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggtgttacttgtgggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccacgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61954" stop="64878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62254" g_stop="62565" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="393" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64578" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="480" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E290157" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62254" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCTCACTCTCTAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCT</genome_strand>
        <mrna_strand>ACCTCTCACTCTCTAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687864" ref_strand="+" ref_description="SGN-E687864 [T3_tus_81_G01]">
      <seq>cggtactctctaacaatggcaaccctttccctgtgttctacatcttccccctcaacagcactttccaagaaccaaacttttcttaacaccctttctgttcccaaagcaaattccaatgttacttttctatctcactcattttcctctctcaatctccgtttctccaagcccaattctttatcctcttttgtacccaaatactcagaatctgaagctccagtagctgaagttgaagctgaccaagaagagcctgttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggtgacgactcacttccattcatgtttaaatttgtgtagacatatctgtttgttttcaatttcgaaatcaatgtgagggtacaatttagatttttattgaaaaaattatgaggtcccaaatgaaaatttgaaaattcagcggaaaatgtttcagttgtctgttaccttgaatttttttctcgaaggaaataggaaattgatctattccctcaaaaggaatgttactttgttgtatagagatcacaactttggttcaagattgtcatgtgctcaacctttgatatcacaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61961" stop="63155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62256" g_stop="62857" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E687864" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62256" e_stop="62857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCACTCTCTAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGC</genome_strand>
        <mrna_strand>CGGT-ACTCTCTAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCAAAAGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418868" ref_strand="+" ref_description="SGN-E418868 [STM-28-B17]">
      <seq>tcactctccaacaatggcaaccctttccctgtgttctacatcttccccctcaacagcactttccaagaaccaaacttttcttaacaccctttctgttcccaaagcaaattccaatgttgcttttctatctcactcactttcttctctcaatctccgtttctccaaacccaattctttttcctcttttgtacccaaattctctgaatctgaagctccagtagctgaagttgaagctgacccagaagagcctgatgcaaccccagttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtctttcctgggcggtatatctacacccagaggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggtgttactagtgggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccatgctgttgttgaagagcagttgaaagataagaaggttatcgtcttcaagtttaagaagaaaaagaactacagaaggaacattggtcacagacagccaattactcggataagaataatgggcattactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61959" stop="65364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62259" g_stop="62565" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="400" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64593" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="502" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64686" g_stop="64760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="577" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="0.96"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65031" g_stop="65064" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="611" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E418868" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62259" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64593"/>
          <exon e_start="64686" e_stop="64760"/>
          <exon e_start="65031" e_stop="65064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCTCTAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCC---T---------GTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTG</genome_strand>
        <mrna_strand>TCACTCTCCAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTGCTTTTCTATCTCACTCACTTTCTTCTCTCAATCTCCGTTTCTCCAAACCCAATTCTTTTTCCTCTTTTGTACCCAAATTCTCTGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCCAGAAGAGCCTGATGCAACCCCAGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTCTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTAGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCATGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTCTTCAAGTTTAAGAAGAAAAAGAACTACAGAAGGAACATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442986" ref_strand="+" ref_description="SGN-E442986 [cSTA-35-D14]">
      <seq>tcactctccaacaatggcaaccctttccctgtgttctacatcttccccctcaacagcactttccaagaaccaaacttttcttaacaccctttctgttcccaaagcaaattccaatgttgcttttctatctcactcactttcttctctcaatctccgtttctccaaacccaattctttttcctcttttgtacccaaattctctgaatctgaagctccagtagctgaagttgaagctgaccccagaagagcctgatgcaaccccagttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtctttcctgggcggtatatctaccacccagaggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggtgttactagtgggaacaaaaacaagtacttgggttggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61959" stop="64848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62259" g_stop="62565" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.886"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="402" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="0.96"/>
            <acceptor a_prob="0.731" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64548" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="459" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E442986" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62259" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCTCTAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGA-CCAAGAAGAGCC---T---------GTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTA-CACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAA</genome_strand>
        <mrna_strand>TCACTCTCCAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTGCTTTTCTATCTCACTCACTTTCTTCTCTCAATCTCCGTTTCTCCAAACCCAATTCTTTTTCCTCTTTTGTACCCAAATTCTCTGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCCCAGAAGAGCCTGATGCAACCCCAGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTCTTTCCTGGGCGGTATATCTACCACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTAGTGGGAACAAAAACAAGTACTTGGGTTGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327464" ref_strand="+" ref_description="SGN-E327464 [cTOC-19-N3]">
      <seq>cactctctaacaatggcaaccctttccctgtgttctacatcttccccctcaacagcactttccaagaaccaaacttttcttaacaccctttctgttcccaaagcaaattccaatgttacttttctatctcactcattttcctctctcaatctccgtttctccaagcccaattctttatcctcttttgtacccaaatactcagaatctgaagctccagtagctgaagttgaagctgaccaagaagagcctgttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggtgacgactcacttccattcatgtttaaatttgtgtagacatatctgtttgttttcaatttcgaaatcaatgtgagggtacaatttagatttttattgaaaaaattatgaggtcccaaatgaaaatttgaaaattcagcggaaaatgtttcagttgtctgttaccttgaatttttttctcgaaggaaataggaaattgatctattccctctaagggaatgttactttgttgtatagagatcacaactttggttcaagattgtcatgtgctcaacctttgatatcacaaaagcagtcggaattttaataaggggaattcaaaattactcagacctattattgaagcaatttctcgaattaacctttgccactagaacgaaaacttcctttatgtcaaacggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61960" stop="63268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62260" g_stop="62968" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E327464" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62260" e_stop="62968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTCTAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATT</genome_strand>
        <mrna_strand>CACTCTCTAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326066" ref_strand="+" ref_description="SGN-E326066 [cTOC-16-O13]">
      <seq>cactctctaacaatggcaaccctttccctgtgttctacatcttccccctcaacagcactttccaagaaccaaacttttcttaacaccctttctgttcccaaagcaaattccaatgttacttttctatctcactcattttcctctctcaatctccgtttctccaagcccaattctttatcctcttttgtacccaaatactcagaatctgaagctccagtagctgaagttgaagctgaccaagaagagcctgttgtggaagccactagcttggaaccaaaaccggaaaaaatctttgctgttgttatggtgacgactcacttccattcatgtttaaattttgtgtagacatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61960" stop="62911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62260" g_stop="62611" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E326066" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62260" e_stop="62611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTCTAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAA-TTTGTGTAGACATATCT</genome_strand>
        <mrna_strand>CACTCTCTAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACCGGAAAAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTTGTGTAGACATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348146" ref_strand="+" ref_description="SGN-E348146 [cTOF-27-O9]">
      <seq>ctctctaacaatggcaaccctttccctgtgttctacatcttccccctcaacagcactttccaagaaccaaacttttcttaacaccctttctgttcccaaagcaaattccaatgttacttttctatctcactcattttcctctctcaatctccgtttctccaagcccaattctttatcctcttttgtacccaaatactcagaatctgaagctccagtagctgaagttgaagctgaccaagaagagcctgttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtttttcctgggcggtatatctacacccagaggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggtgttacttgtgggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccacgctgttgttgaagagcagttgaaagataagaaggttatcgtcttcaagtataagaagaaaaagaactacagaaggaatattggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcccccttgcagacctagaagcagccaagtgacttttaggctcaaaattacgtccaaattgctgntttctaacatctgctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61962" stop="65468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62262" g_stop="62565" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="385" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64593" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="487" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64686" g_stop="64760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="562" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65031" g_stop="65168" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="699" r_length="137" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E348146" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62262" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64593"/>
          <exon e_start="64686" e_stop="64760"/>
          <exon e_start="65031" e_stop="65168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTA</genome_strand>
        <mrna_strand>CTCTCTAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCCCCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGNTTTCT-AACATCTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348898" ref_strand="+" ref_description="SGN-E348898 [cTOF-29-G17]">
      <seq>ctctctaaccatggcaaccctttccctggtgttctacactcttccccctcaacagcactttccaagaaccaaacttttcttaaacaccctttctgttcccaaagcaaattccaatgttacttttctatctcactcattttcctctctcaatctccgtttctccaagcccaattctttatcctcttttgtacccaaatactcagaatctgaagctccagtagctgaagttgaagctgaccaagaagagcctgttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtttttcctgggcggtatatctacacccagaggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggtgttacttgtgggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccacngctgttgttgaagagcagttgaaagataagaaggttatcgttttcaagtataagaagaaaaagaactacagaaggaatatttggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61962" stop="65396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62262" g_stop="62565" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="388" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64593" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="491" r_length="103" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64686" g_stop="64760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="567" r_length="76" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="0.96"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65031" g_stop="65096" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="633" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E348898" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62262" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64593"/>
          <exon e_start="64686" e_stop="64760"/>
          <exon e_start="65031" e_stop="65096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTAACAATGGCAACCCTTTCCCT-GTGTTCTACA-TCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTT-AACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCAC-GCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATAT-TGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCA</genome_strand>
        <mrna_strand>CTCTCTAACCATGGCAACCCTTTCCCTGGTGTTCTACACTCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACNGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTTTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484932" ref_strand="+" ref_description="SGN-E484932 [cSTE-15-L22]">
      <seq>ctccaacaatggcaaccctttccctgtgttctacatcttccccctcaacagcactttccaagaaccaaactttcctaaacaccctttctgttcccaaagcaaattccaatgttacttttctatctcactcattttcctctctcaatctccgtttctccaagcccaattctttatcctcttttgtacccaaatactctgaatctgaagctccagtagctgaaattgaagctgacccagaagatcctgttgcaaccccagttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtttttcctgggaggtatatctacacccagaggcttaaaggagcaaatgtcaatgacaaaattatcctaaacaaggtgttactagtgggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccatgctgttgttgaagagcagttgaaagataagaaggttatcgtcttcaagtataagaagaaaaagaactacagaaggaacattggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgcagacctagaagcagccaagtgacttttaggctcaagattacatccaaattactgttttctcaggattatgtagttttgtatagaccgaggaagcaatgacagaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61964" stop="65526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62264" g_stop="62565" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="395" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="0.96"/>
            <acceptor a_prob="0.731" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64593" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="497" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64686" g_stop="64760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="572" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65031" g_stop="65157" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="699" r_length="127" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E484932" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62264" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64593"/>
          <exon e_start="64686" e_stop="64760"/>
          <exon e_start="65031" e_stop="65157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGA-------G-----CCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCA</genome_strand>
        <mrna_strand>CTCCAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTCCTAAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCTGAATCTGAAGCTCCAGTAGCTGAAATTGAAGCTGACCCAGAAGATCCTGTTGCAACCCCAGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTTTTTCCTGGGAGGTATATCTACACCCAGAGGCTTAAAGGAGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTAGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCATGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAACATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAGATTACATCCAAATTACTGTTTTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603872" ref_strand="+" ref_description="SGN-E603872 [67061]">
      <seq>ctccaacaatggcaaccctttccctgtgttctacatcttccccctcaacagcactttccaagaaccaaacttttcttaacaccctttctgttcccaaagcaaattccaatgttgcttttctatctcactcactttcttctctcaatctccgtttctccaaacccaattctttttcctcttttgtacccaaattctctgaatctgaagctccagtagctgaagttgaagctgacccagaagagcctgatgcaaccccagttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtctttcctgggcggtatatctacacccagaggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggtgttactagtgggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccatgctgttgttgaagagcagttgaaagataagaaggttatcgtcttcaagtataagaagaaacagaactacagaaggaacattggtcacagacaggcaattactcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61964" stop="65066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62264" g_stop="62565" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="395" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64593" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="497" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64686" g_stop="64760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="572" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="0.96"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65031" g_stop="65043" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="585" r_length="13" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E603872" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E603872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62264" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64593"/>
          <exon e_start="64686" e_stop="64760"/>
          <exon e_start="65031" e_stop="65043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCC---T---------GTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGA</genome_strand>
        <mrna_strand>CTCCAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTGCTTTTCTATCTCACTCACTTTCTTCTCTCAATCTCCGTTTCTCCAAACCCAATTCTTTTTCCTCTTTTGTACCCAAATTCTCTGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCCAGAAGAGCCTGATGCAACCCCAGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTCTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTAGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCATGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAACAGAACTACAGAAGGAACATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................GCAATTACTCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343361" ref_strand="+" ref_description="SGN-E343361 [cTOF-19-I19]">
      <seq>tctaacaatggcaaccctttccctgtgttctacatcttccccctcaacagcactttccaagaaccaaacttttcttaacaccctttctgttcccaaagcaaattccaatgttacttttctatctcactcattttcctctctcaatctccgtttctccaagcccaattctttatcctcttttgtacccaaatactcagaatctgaagctccagtagctgaagttgaagctgaccaagaagagcctgttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtttttcctgggcggtatatctacacccagaggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggtgttacttgtgggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccacgctgttgttgaagagcagttgaaagataagaaggttatcgtcttcaagtataagaagaaaaagaactacagaaggaatattggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgcagacctagaagcagccaagtgacttttaggctcaaaattacgtccaaattgctgttttctcaacatctgcttaatagtgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61965" stop="65477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62265" g_stop="62565" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="382" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64593" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="484" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64686" g_stop="64760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="559" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65031" g_stop="65177" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="706" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E343361" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62265" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64593"/>
          <exon e_start="64686" e_stop="64760"/>
          <exon e_start="65031" e_stop="65177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCT</genome_strand>
        <mrna_strand>TCTAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268950" ref_strand="+" ref_description="SGN-E268950 [cLEI-16-C13]">
      <seq>tctaacaatggcaaccctttccctgtgttctacatcttccccctcaacagcactttccaagaaccaaacttttcttaacaccctttctgttcccaaagcaaattccaatgttacttttctatctcactcattttcctctctcaatctccgtttctccaagcccaattctttatcctcttttgtacccaaatactcagaatctgaagctccagtagctgaagttgaagctgaccaagaagagcctgttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtttttcctgggcggtatatctacacccagaggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggtgttacttgtgggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccacgctgttgttgaagagcagttgaaagataagaaggttatcgtcttcaagtttaagaagaaaaagaactacagaaggaatattggtcacagacagccaattactcggataagaataatgggcattactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61965" stop="65364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62265" g_stop="62565" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="382" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64593" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="484" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64686" g_stop="64760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="559" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65031" g_stop="65064" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="593" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E268950" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62265" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64593"/>
          <exon e_start="64686" e_stop="64760"/>
          <exon e_start="65031" e_stop="65064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTG</genome_strand>
        <mrna_strand>TCTAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTCTTCAAGTTTAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268473" ref_strand="+" ref_description="SGN-E268473 [cLEI-13-A11]">
      <seq>tctaacaatggcaaccctttccctgtgttctacatgttccccctcaacagcactttccaagaaccaaacttttcttaacaccctttctgttcccaaagcaaattccaatgttacttttctatctcactcattttcctctctcaatctccgtttctccaagcccaattctttatcctcttttgtacccaaatactcagaatctgaagctccagtagctgaagttgaagctgaccaagaagagcctgttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtttttcctgggcggtatatctacacccagaggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggtgttacttgtgggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccacgctgttgttgaagagcagttgaaagataagaaggttatcgtcttcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61965" stop="65016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62265" g_stop="62565" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="382" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64593" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="484" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64686" g_stop="64716" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="515" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E268473" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62265" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64593"/>
          <exon e_start="64686" e_stop="64716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGT</genome_strand>
        <mrna_strand>TCTAACAATGGCAACCCTTTCCCTGTGTTCTACATGTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTCTTCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203321" ref_strand="+" ref_description="SGN-E203321 [cLEB-3-J1]">
      <seq>gcacgagtggcaaccctttccctgtgttctacatcttccccctcaacagcactttccaagaaccaaacttttcttaacaccctttctgttcccaaagcaaattccaatgttacttttctatctcactcattttcctctctcaatctccgtttctccaagcccaattctttatcctcttttgtacccaaatactcagaatctgaagctccagtagctgaagttgaagctgaccaagaagagcctgttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtttttcctgggcggtatatctacacccagaggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggtgttacttgtgggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccacgctgttgttgaagagcagttgaaagataagaaggttatcgtcttcaagtataagaagaaaaagaactacagaaggaatattggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61969" stop="65392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62266" g_stop="62565" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="381" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64593" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="483" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64686" g_stop="64760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="558" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65031" g_stop="65092" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="620" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E203321" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62266" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64593"/>
          <exon e_start="64686" e_stop="64760"/>
          <exon e_start="65031" e_stop="65092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCT</genome_strand>
        <mrna_strand>GCACGAGTGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272066" ref_strand="+" ref_description="SGN-E272066 [cLEM-8-F18]">
      <seq>ctaacaatggcaaccctttccctgtgttctacatcttccccctcaacagcactttccaagaaccaaacttttcttaacaccctttctgttcccaaagcaaattccaatgttacttttctatctcactcattttcctctctcaatctccgtttctccaagcccaattctttatcctcttttgtacccaaatactcagaatctgaagctccagtagctgaagttgaagctgaccaagaagagcctgttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtttttcctgggcggtatatctacacccagaggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggtgttacttgtgggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccacgctgttgttgaagagcagttgaaagataagaaggttatcgtcttcaagtataagaagaaaaagaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61966" stop="65035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62266" g_stop="62565" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="381" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64593" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="483" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64686" g_stop="64735" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="533" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E272066" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62266" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64593"/>
          <exon e_start="64686" e_stop="64735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTA</genome_strand>
        <mrna_strand>CTAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604823" ref_strand="+" ref_description="SGN-E604823 [74962]">
      <seq>caacaatggcaaccctttccctgtgttctacatcttccccctcaacagcactttccaagaaccaaacttttcttaacaccctttctgttcccaaagcaaattccaatgttgcttttctatctcactcactttcttctctcaatctccgtttctccaaacccaattctttttcctcttttgtacccaaattctctgaatctgaagctccagtagctgaagttgaagctgacccagaagagcctgatgcaaccccagttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtctttcctgggcggtatatctacacccagaggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggtgttactagtgggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccatgctgttgttgaagagcagttgaaagataagaaggttatcgtcttcaagtataagaagaaaaagaactacagaaggaacattggtcacagacagcaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgcatgacctagaagcagccaagtgacttttaggctcaagattacatccaaattactgtttctcaggattatgtagtttgtatagaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61968" stop="65506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62267" g_stop="62565" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="392" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64593" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="494" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64686" g_stop="64760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="569" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65031" g_stop="65148" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="687" r_length="118" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E604823" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62267" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64593"/>
          <exon e_start="64686" e_stop="64760"/>
          <exon e_start="65031" e_stop="65148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCC---T---------GTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCA-GACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCT</genome_strand>
        <mrna_strand>CAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTGCTTTTCTATCTCACTCACTTTCTTCTCTCAATCTCCGTTTCTCCAAACCCAATTCTTTTTCCTCTTTTGTACCCAAATTCTCTGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCCAGAAGAGCCTGATGCAACCCCAGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTCTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTAGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCATGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAACATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................-CAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCATGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAGATTACATCCAAATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E616052" ref_strand="+" ref_description="SGN-E616052 [65857]">
      <seq>caacaatggcaaccctttccctgtgttctacatcttccccctcaacagcactttccaagaaccaaacttttcttaacaccctttctgttcccaaagcaaattccaatgttgcttttctatctcactcactttcttctctcaatctccgtttctccaaacccaattctttttcctcttttgtacccaaattctctgaatctgaagctccagtagctgaagttgaagctgacccagaagagcctgatgcaaccccagttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtctttcctgggcggtatatctacacccagaggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggtgttactagtgggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccatgctgttgttgaagagcagttgaaagataagaaggttatcgtcttcaagtataagaagaaaaagaactacagaaggaacattggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgcagacctagaagcagccaagtgacttttaggctcaagattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61968" stop="65436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62267" g_stop="62565" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="392" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64593" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="494" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64686" g_stop="64760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="569" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65031" g_stop="65136" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="675" r_length="106" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E616052" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E616052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62267" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64593"/>
          <exon e_start="64686" e_stop="64760"/>
          <exon e_start="65031" e_stop="65136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCC---T---------GTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTAC</genome_strand>
        <mrna_strand>CAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTGCTTTTCTATCTCACTCACTTTCTTCTCTCAATCTCCGTTTCTCCAAACCCAATTCTTTTTCCTCTTTTGTACCCAAATTCTCTGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCCAGAAGAGCCTGATGCAACCCCAGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTCTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTAGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCATGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAACATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342248" ref_strand="+" ref_description="SGN-E342248 [cTOF-8-G23]">
      <seq>aacaatggcaaccctttccctgtgttctacatcttccccctcaacagcactttccaagaaccaaacttttcttaacaccctttctgttcccaaagcaaattccaatgttacttttctatctcactcattttcctctctcaatctccgtttctccaagcccaattctttatcctcttttgtacccaaatactcagaatctgaagctccagtagctgaagttgaagctgaccaagaagagcctgttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtttttcctgggcggtatatctacacccagaggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggtgttacttgtgggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccacgctgttgttgaagagcagttgaaagataagaaggttatcgtcttcaagtataagaagaaaaagaactacagaaggaatattggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61968" stop="65396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62268" g_stop="62565" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="379" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64593" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="481" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64686" g_stop="64760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="556" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65031" g_stop="65096" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="622" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E342248" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62268" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64593"/>
          <exon e_start="64686" e_stop="64760"/>
          <exon e_start="65031" e_stop="65096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCA</genome_strand>
        <mrna_strand>AACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342718" ref_strand="+" ref_description="SGN-E342718 [cTOF-7-C15]">
      <seq>aacaatggcaaccctttccctgtgttctacatcttccccctcaacagcactttccaagaaccaaacttttcttaacaccctttctgttcccaaagcaaattccaatgttacttttctatctcactcattttcctctctcaatctccgtttctccaagcccaattctttatcctcttttgtacccaaatactcagaatctgaagctccagtagctgaagttgaagctgaccaagaagagcctgttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtttttcctgggcggtatatctacacccagaggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggtgttacttgtgggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccacgctgttgttgaagagcagttgaaagataagaaggttatcgtcttcaagtataagaagaaaaagaactacagaaggaatattggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61968" stop="65395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62268" g_stop="62565" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="379" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64593" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="481" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64686" g_stop="64760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="556" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65031" g_stop="65095" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="621" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E342718" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62268" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64593"/>
          <exon e_start="64686" e_stop="64760"/>
          <exon e_start="65031" e_stop="65095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGC</genome_strand>
        <mrna_strand>AACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310809" ref_strand="+" ref_description="SGN-E310809 [cLEZ-15-I7]">
      <seq>acaatggcaaccctttccctgtgttctacatcttccccctcaacagcactttccaagaaccaaacttttcttaacaccctttctgttcccaaagcaaattccaatgttacttttctatctcactcattttcctctctcaatctccgtttctccaagcccaattctttatcctcttttgtacccaaatactcagaatctgaagctccagtagctgaagttgaagctgaccaagaagagcctgttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtttttcctgggcggtatatctacacccagaggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggtgttacttgtgggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccacgctgttgttgaagagcagttgaaagataagaaggttatcgtcttcaagtataagaagaaaaagaactacagaaggaatattggtcacagacagccaattactcggataagaataatgggcattactggttatcaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61969" stop="65374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62269" g_stop="62565" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="378" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64593" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="480" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64686" g_stop="64760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="555" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65031" g_stop="65074" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="599" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E310809" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62269" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64593"/>
          <exon e_start="64686" e_stop="64760"/>
          <exon e_start="65031" e_stop="65074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGA</genome_strand>
        <mrna_strand>ACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476736" ref_strand="+" ref_description="SGN-E476736 [cSTB-45-F24]">
      <seq>caatggcaaccctttccctgtgttctacatcttccccctcaacagcactttccaagaaccaaacttttcttaacaccctttctgttcccaaagcaaattccaatgttgcttttctatctcactcactttcttctctcaatctccgtttctccaaacccaattctttttcctcttttgtacccaaattctctgaatctgaagctccagtagctgaagttgaagctgacccagaagagcctgatgcaaccccagttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtctttcctgggcggtatatctacacccagaggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggtgttactagtgggaacaaaaacaagtacttgggttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61970" stop="64845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62270" g_stop="62565" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="389" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64545" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="443" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E476736" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62270" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCC---T---------GTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGA</genome_strand>
        <mrna_strand>CAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTGCTTTTCTATCTCACTCACTTTCTTCTCTCAATCTCCGTTTCTCCAAACCCAATTCTTTTTCCTCTTTTGTACCCAAATTCTCTGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCCAGAAGAGCCTGATGCAACCCCAGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTCTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTAGTGGGAACAAAAACAAGTACTTGGGTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410094" ref_strand="+" ref_description="SGN-E410094 [PPI-16-C21]">
      <seq>atggcaaccctttccctgtgttctacatcttccccctcaacagcactttccaagaaccaaactttcctaaacaccctttctgttcccaaagcaaataccaatgttacttttctatctcactcattttcctctctcaatctccgtttctccaagcccaattctttatcctcttttgtacccaaatactctgaatctgaagctccagtagctgaaattgaagctgacccagaagagcctgttgcaaccccagttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtctttcctgggcggtatatctacacccagaggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggttttactagtgggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccacgctgttgttgaagagcagttgaaagataagaaggtgatagtcttcaagtataagaagaaaaaaaattacagaaggaacattggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgcagacctagaagcagccaagtgacttttaggctcaagatacatcccaaatactgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61972" stop="65444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62272" g_stop="62565" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="387" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64593" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="489" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64686" g_stop="64760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="564" r_length="75" r_score="0.933"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="0.94"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65031" g_stop="65153" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="686" r_length="122" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E410094" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62272" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64593"/>
          <exon e_start="64686" e_stop="64760"/>
          <exon e_start="65031" e_stop="65153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCC---T---------GTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTT</genome_strand>
        <mrna_strand>ATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTCCTAAACACCCTTTCTGTTCCCAAAGCAAATACCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCTGAATCTGAAGCTCCAGTAGCTGAAATTGAAGCTGACCCAGAAGAGCCTGTTGCAACCCCAGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTCTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTTTTACTAGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTGATAGTCTTCAAGTATAAGAAGAAAAAAAATTACAGAAGGAACATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAGA-TACATCCCAAATACTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370488" ref_strand="+" ref_description="SGN-E370488 [TUS-29-E11]">
      <seq>caaccctttccctgtgttctacatcttccccctcaacagcactttccaagaaccaaacttttcttaacaccctttctgttcccaaagcaaattccaatgttacttttctatctcactcattttcctctctcaatctccgtttctccaagcccaattctttatcctcttttgtacccaaatactcagaatctgaagctccagtagctgaagttgaagctgaccaagaagagcctgttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtttttcctgggcggtatatctacacccagaggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggtgttacttgtgggaacaaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccacgctgttgttgaagagcagttgaaagacaagaaggttatcgtcttcaagtataagaagaaaaagaactacagaaggaatattggtcacagacagccaattactcggataagaatattgggcattactggttatcaagattcaccagcagtcaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61976" stop="65392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62276" g_stop="62565" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="371" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64593" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="474" r_length="103" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64686" g_stop="64760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="549" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65031" g_stop="65092" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="611" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E370488" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62276" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64593"/>
          <exon e_start="64686" e_stop="64760"/>
          <exon e_start="65031" e_stop="65092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAAC-AAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCT</genome_strand>
        <mrna_strand>CAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGACAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATATTGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280390" ref_strand="+" ref_description="SGN-E280390 [cLER-1-D19]">
      <seq>caaccctttccctgtgttctacatcttccccctcaacagcactttccaagaaccaaacttttcttaacaccctttctgttcccaaagcaaattccaatgttacttttctatctcactcattttcctctctcaatctccgtttctccaagcccaattctttatcctcttttgtacccaaatactcagaatctgaagctccagtagctgaagttgaagctgaccaagaagagcctgttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtttttcctgggcggtatatctacacccagaggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggtgttacttgtgggaacaaaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61976" stop="64830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62276" g_stop="62565" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="371" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64531" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="411" r_length="40" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E280390" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62276" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAA</genome_strand>
        <mrna_strand>CAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340453" ref_strand="+" ref_description="SGN-E340453 [cTOF-1-E12]">
      <seq>aaccctttccctgtgttctacatcttccccctcaacagcactttccagaaccaacttttcttaacaccctttctgttcccaaagcaaattccaatgttacttttctatctcactcattttcctctctcaatctccgtttctccaagcccaattctttatcctcttttgtacccaaatactcagaatctgaagctccagtagctgaaagtgaagctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61977" stop="62795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62277" g_stop="62495" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E340453" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>219</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62277" e_stop="62495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGA</genome_strand>
        <mrna_strand>AACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCC-AGAACC-AACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAAGTGAAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461624" ref_strand="+" ref_description="SGN-E461624 [cPRO-9-E23]">
      <seq>gtgttctacatcttccccctcaacagcactttccaagaaccaaactttcctaaacaccctttctgttcccaaagcaaattccaatgttacttttctatctcactcattttcctctctcaatctccgtttctccaagcccaattctttatcctcttttgtacctaaatactctgaatctgaagctccagtagctgaaattgaagctgacccagaagagcctgttgcaaccccagttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtttttcctgggaggtatatctacacccagaggcttaaaggagcaaatgtcaatgacaaaattatcctaaacaaggtgttactagtgggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccatgctgttgttgaagagcagttgaaagataagaaggttatcgtcttcaagtataagaagaaaaagaactacagaaggaacattggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgcagacctagaagcagccaagtgacttttaagctcaaattacatccaaattactgttttctcaggattatgtagttttgtatagaccgaggaagcatgacagaaatgagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61989" stop="65530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62289" g_stop="62565" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="370" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="0.96"/>
            <acceptor a_prob="0.731" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64593" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="472" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64686" g_stop="64760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="547" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65031" g_stop="65157" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="673" r_length="126" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E461624" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E461624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62289" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64593"/>
          <exon e_start="64686" e_stop="64760"/>
          <exon e_start="65031" e_stop="65157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCC---T---------GTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCA</genome_strand>
        <mrna_strand>GTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTCCTAAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCTAAATACTCTGAATCTGAAGCTCCAGTAGCTGAAATTGAAGCTGACCCAGAAGAGCCTGTTGCAACCCCAGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTTTTTCCTGGGAGGTATATCTACACCCAGAGGCTTAAAGGAGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTAGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCATGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAACATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAAGCTC-AAATTACATCCAAATTACTGTTTTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345782" ref_strand="+" ref_description="SGN-E345782 [cTOF-18-E14]">
      <seq>tgttctacatcttccccctcaacagcactttccaagaaccaaacttttcttaacaccctttctgttcccaaagcaaattccaatgttacttttctatctcactcattttcctctctcaatctccgtttctccaagcccaattctttatcctcttttgtacccaaatactcagaatctgaagctccagtagctgaagttgaagctgaccaagaagagcctgttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtttttcctgggcggtatatctacacccagaggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggtgttacttgtgggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccacgctgttgttgaagagcagttgaaagataagaaggttatcgtcttcaagtataagaagaaaaagaactacagaaggaatattggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61990" stop="65396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62290" g_stop="62565" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="357" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64593" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="459" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64686" g_stop="64760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="534" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65031" g_stop="65096" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="600" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E345782" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62290" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64593"/>
          <exon e_start="64686" e_stop="64760"/>
          <exon e_start="65031" e_stop="65096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCA</genome_strand>
        <mrna_strand>TGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287958" ref_strand="+" ref_description="SGN-E287958 [cLES-7-O15]">
      <seq>tctacatcttccccctcaacagcactttccaagaaccaaacttttcttaacaccctttctgttcccaaagcaaattccaatgttacttttctatctcactcattttcctctctcaatctccgtttctccaagcccaattctttatcctcttttgtacccaaatactcagaatctgaagctccagtagctgaagttgaagctgaccaagaagagcctgttgtggaagccactagcttgggaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtttttcctgggcggtatatctacacccagaggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggtgttacttgtgggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccacgctgttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61993" stop="64884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62293" g_stop="62565" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="354" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64584" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="447" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E287958" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62293" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTT</genome_strand>
        <mrna_strand>TCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGGACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476893" ref_strand="+" ref_description="SGN-E476893 [cSTB-46-K4]">
      <seq>ctcaacagcactttccaagaaccaaactttcctaaacaccctttctgttcccaaagcaaataccaatgttacttttctatctcactcattttcctctctcaatctccgtttctccaagcccaattctttatcctcttttgtacccaaatactctgaatctgaagctccagtagctgaaattgaagctgacccagaagagcctgttgcaaccccagttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtctttcctgggcggtatatctacacccagaggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggttttactagtgggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccacgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62007" stop="64879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62307" g_stop="62565" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="352" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64579" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="440" r_length="88" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E476893" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62307" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCC---T---------GTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTG</genome_strand>
        <mrna_strand>CTCAACAGCACTTTCCAAGAACCAAACTTTCCTAAACACCCTTTCTGTTCCCAAAGCAAATACCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCTGAATCTGAAGCTCCAGTAGCTGAAATTGAAGCTGACCCAGAAGAGCCTGTTGCAACCCCAGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTCTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTTTTACTAGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E432043" ref_strand="+" ref_description="SGN-E432043 [STM-56-M6]">
      <seq>ttcctaaacaccctttctgttcccaaagcaaataccaatgttacttttctatctcactcattttcctctctcaatctccgtttctccaagcccaattctttatcctcttttgtacccaaatactctgaatctgaagctccagtagctgaaattgaagctgacccagaagagcctgttgcaaccccagttgtggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccacgctgttgttgaagagcagttgaaagataagaaggtgatagtcttcaagtataagaagaaaaaaaattacagaaggaacattggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgcagacctagaagcagccaagtgacttttaggctcaagattacatccaaattactgttttctcaggattatgtagttttgtatagaccgaggaagcaatgacagaaatgagttttggaaggcgcatttaacttcatcttttgttgtaatttccatccattttgtttctttgcatgtattatttggttgagcaatgtacttgagttttgaatatttcagaaacctctttttgattgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62036" stop="65656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62335" g_stop="62522" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62523" i_stop="64513" i_length="1991">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64514" g_stop="64593" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="266" r_length="79" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64686" g_stop="64760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="341" r_length="75" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="0.94"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65031" g_stop="65356" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="643" r_length="302" r_score="0.899"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65357" i_stop="65558" i_length="202">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.077" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65559" g_stop="65571" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="656" r_length="13" r_score="0.769"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E432043" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.040" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E432043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62335" e_stop="62522"/>
          <exon e_start="64514" e_stop="64593"/>
          <exon e_start="64686" e_stop="64760"/>
          <exon e_start="65031" e_stop="65356"/>
          <exon e_start="65559" e_stop="65571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAACAGCAGTTATTCTTTGCACTTACTAGGCCAAACATGTCTCTCATTCATCATCTTCTTAAATTGCAAGTGATTATTATGACCTCTTTATCTTCTTCTCAAGTACCAGACATGTCTGTTCATGTCATAGCATTTATGTGTAAATTGAGGGTTGAGAGATTGTTAAACCTAACACGTTATCGTAGACTTGAGGGAATTAATTTTCAGAAAGTAAAAACAA</genome_strand>
        <mrna_strand>TTCCTAAACACCCTTTCTGTTCCCAAAGCAAATACCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCTGAATCTGAAGCTCCAGTAGCTGAAATTGAAGCTGACCCAGAAGAGCCTGTTG-CAACCCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGT-GGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTGATAGTCTTCAAGTATAAGAAGAAAAAAAATTACAGAAGGAACATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAGATTACATCCAAA---------T-T----A-CTG-TT--T--T--C--TCAGGATTATGTAGTTTTGTATAGACCGAGGAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACTTCATCTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTTCAGAAACCTCTTTTTGATTGAAAA..........................................................................................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E432044" ref_strand="-" ref_description="SGN-E432044 [STM-56-M6]">
      <seq>ttcctaaacaccctttctgttcccaaagcaaataccaatgttacttttctatctcactcattttcctctctcaatctccgtttctccaagcccaattctttatcctcttttgtacccaaatactctgaatctgaagctccagtagctgaaattgaagctgacccagaagagcctgttgcaaccccagttgtggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccacgctgttgttgaagagcagttgaaagataagaaggtgatagtcttcaagtataagaagaaaaaaaattacagaaggaacattggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgcagacctagaagcagccaagtgacttttaggctcaagattacatccaaattactgttttctcaggattatgtagttttgtatagaccgaggaagcaatgacagaaatgagttttggaaggcgcatttaacttcatcttttgttgtaatttccatccattttgtttctttgcatgtattatttggttgagcaatgtacttgagttttgaatatttcagaaacatatttttgatgaaaaaaaaaattttgtttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62034" stop="65656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62335" g_stop="62522" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62523" i_stop="64513" i_length="1991">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64514" g_stop="64593" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="266" r_length="79" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64686" g_stop="64760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="341" r_length="75" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="0.94"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65031" g_stop="65371" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="658" r_length="317" r_score="0.871"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E432044" ref_strand="-">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.040" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E432044" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62335" e_stop="62522"/>
          <exon e_start="64514" e_stop="64593"/>
          <exon e_start="64686" e_stop="64760"/>
          <exon e_start="65031" e_stop="65371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAACAGCAGTTATTCTTTGC</genome_strand>
        <mrna_strand>TTCCTAAACACCCTTTCTGTTCCCAAAGCAAATACCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCTGAATCTGAAGCTCCAGTAGCTGAAATTGAAGCTGACCCAGAAGAGCCTGTTG-CAACCCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGT-GGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTGATAGTCTTCAAGTATAAGAAGAAAAAAAATTACAGAAGGAACATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAGATTACATCCAAA---------T-T----A-CTG-TT--T--T--C--TCAGGATTATGTAGTTTTGTATAGACCGAGGAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACTTCATCTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTTCAGAAACATATTTTTGATGAAAAAAAAAATTTTGTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279647" ref_strand="+" ref_description="SGN-E279647 [cLER-5-C4]">
      <seq>taacaccctttctgttcccaaagcaaattccaatgttacttttctatctcactcattttcctctctcaatctccgtttctccaagcccaattctttatcctcttttgtacccaaatactcagaatctgaagctccagtagctgaagttgaagctgaccaagaagagcctgttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtttttcctgggcggtatatctacacccagaggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggtgttacttgtgggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccacgctgttgttgaagagcagttgaaagacaagaaggttatcgtcttcaagtataagaagaaaaagaactacagaaggaatattggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgcagacctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62040" stop="65403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62340" g_stop="62565" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="307" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64593" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="409" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64686" g_stop="64760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="484" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65031" g_stop="65103" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="557" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E279647" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62340" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64593"/>
          <exon e_start="64686" e_stop="64760"/>
          <exon e_start="65031" e_stop="65103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAG</genome_strand>
        <mrna_strand>TAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGACAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402105" ref_strand="+" ref_description="SGN-E402105 [PPC-6-M16]">
      <seq>ttccaatgttgcttttctatctcactcactttcttctctcaatctccgtttctccaaacccaattctttttcctcttttgtacccaaattctctgaatctgaagctccagtagctgaagttgaagctgacccagaagagcctgatgcaaccccagttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtctttcctgggcggtatatctacacccagaggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggtgttactagtgggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccatgctgttgttgaagagcagttgaaagataagaaggttatcgtcttcaagtataagaagaaaaagaactacagaaggaacattggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgcagacctagaagcagccaagtgacttttaggctcaagattacatccaaattactgttttctcaggattatgtagttttgtatagaccgaggaagcaatgacagaaatgagttttggaaggcgcatttaacttcatcttttggtgtaatttccatccattttgtttctttgcatggattatttggttgagcaatgtacttgagttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62067" stop="65626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62367" g_stop="62565" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.839"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="292" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64593" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="394" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64686" g_stop="64760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="469" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65031" g_stop="65326" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="741" r_length="272" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E402105" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62367" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64593"/>
          <exon e_start="64686" e_stop="64760"/>
          <exon e_start="65031" e_stop="65326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCC---TG---------TTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGA</genome_strand>
        <mrna_strand>TTCCAATGTTGCTTTTCTATCTCACTCACTTTCTTCTCTCAATCTCCGTTTCTCCAAACCCAATTCTTTTTCCTCTTTTGTACCCAAATTCTCTGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCCAGAAGAGCCTGATGCAACCCCAGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTCTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTAGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCATGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAACATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAGATTACATCCAAA---------T-T----A-CTG-TT--T--T--C--TCAGGATTATGTAGTTTTGTATAGACCGAGGAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACTTCATCTTTTGGTGTAATTTCCATCCATTTTGTTTCTTTGCATGGATTATTTGGTTGAGCAATGTACTTGAGTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392377" ref_strand="+" ref_description="SGN-E392377 [TUS-35-L4]">
      <seq>ctcaatctccgtttctccaagcccaattctttatcctcttttgtacccaaatactcagaatctgaagctccagtagctgaagttgaagctgaccaagaagagcctgttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtttttcctgggcggtatatctacacccagaggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggtgttacttgtgggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccacgctgttgttgaagagcagttgaaagatacgaaggttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62104" stop="64902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62404" g_stop="62565" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="243" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64593" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="345" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64686" g_stop="64706" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="366" r_length="21" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E392377" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62404" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64593"/>
          <exon e_start="64686" e_stop="64706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATC</genome_strand>
        <mrna_strand>CTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATACGAAGGTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392384" ref_strand="+" ref_description="SGN-E392384 [TUS-35-N6]">
      <seq>ctcaatctccgtttctccaagcccaattctttatcctcttttgtacccaaatactcagaatctgaagctccagtagctgaagttgaagctgaccaagaagagcctgttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtttttcctgggcggtatatctacacccagaggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggtgttacttgtgggaacaaaaacaagtacttgggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62104" stop="64843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62404" g_stop="62565" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="243" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64543" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="295" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E392384" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62404" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTG</genome_strand>
        <mrna_strand>CTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204147" ref_strand="+" ref_description="SGN-E204147 [cLEC-13-E9]">
      <seq>tcaatctccgtttctccaagcccaattctttatcctcttttgtacccaaatactcagaatctgaagctccagtagctgaagttgaagctgaccaagaagagcctgttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtttttcctgggcggtatatctacacccagaggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggtgttacttgtgggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccacgctgttgttgaagagcagttgaaagataagaaggttatcgtcttcaagtataagaagaaaaagaactacagaaggaatattggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgcagacctagaagcagccaagtgacttttaggctcaaaattacgtccaaattgctgttttctcaacatctgcttaatagtgcctttcaggattatgtagttttgtatagaccgagaaagcaatgacagaaatgagttttggaaggcgcatttaacctcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62105" stop="65554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62405" g_stop="62565" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="242" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64593" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="344" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64686" g_stop="64760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="419" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65031" g_stop="65254" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="643" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E204147" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62405" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64593"/>
          <exon e_start="64686" e_stop="64760"/>
          <exon e_start="65031" e_stop="65254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATG</genome_strand>
        <mrna_strand>TCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204478" ref_strand="+" ref_description="SGN-E204478 [cLEC-24-I21]">
      <seq>tcaatcggcgtttctccaagcccaattctttatcctcttttgtacccaaatactcagaatctgaagctccagtagctgaagttgaagctgaccaagaagagcctgttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtttttcctgggcggtatatctacacccagaggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggtgttacttgtgggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccacgctgttgttgaagagcagttgaaagataagaaggttatcgtcttcaagtataagaagaaaaagaactacagaaggaatattggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgcagacctagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62105" stop="65406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62405" g_stop="62565" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="242" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64593" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="344" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64686" g_stop="64760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="419" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65031" g_stop="65106" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="495" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E204478" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62405" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64593"/>
          <exon e_start="64686" e_stop="64760"/>
          <exon e_start="65031" e_stop="65106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAG</genome_strand>
        <mrna_strand>TCAATCGGCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204540" ref_strand="+" ref_description="SGN-E204540 [cLEC-24-I19]">
      <seq>tcaatctccgtttctccaagcccaattctttatcctcttttgtacccaaatactcagaatctgaagctccagtagctgaagttgaagctgaccaagaagagcctgttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtttttcctgggcggtatatctacacccagaggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggtgttacttgtgggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccacgctgttgttgaagagcagttgaaagataagaaggttatcgtcttcaagtttaagaagaaaaagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62105" stop="65033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62405" g_stop="62565" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="242" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64593" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="344" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64686" g_stop="64733" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="392" r_length="48" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E204540" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62405" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64593"/>
          <exon e_start="64686" e_stop="64733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAAC</genome_strand>
        <mrna_strand>TCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTCTTCAAGTTTAAGAAGAAAAAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E435654" ref_strand="-" ref_description="SGN-E435654 [STM-61-L16]">
      <seq>agtagctgaaattgaagctgacccagaagagcctgttgcacccccagttgtggaagccactagcttggaaccaaaacgggaagaaatctttgctgttgttatggttggatctcggcaatatattgtctttcctgggcggtatatctacacccagaggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggttttactagtgggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccacgctgttgttgaagagcagttgaaagataagaaggtgatagtcttcaagtataagaagaaaaaaaattacagaaggaacattggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgcagacctagaagcagccaagtgacttttaggctcaagattacatccaaattactgttttctcaggattatgtagttttgtatagaccgaggaagcaatgacagaaatgagttttggaaggcgcatttaacttcatcttttgttgtaatttccatccattttgtttctttgcatgtattatttggttgagcaatgtacttgagttttgaatatttcagaaacctctttttgattgaacgccaattattctttgcacttactaggccaaacatgtctgtcattcataatcttcttaaattgcaagtgaatattagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62206" stop="65733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62506" g_stop="62565" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="103" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64021" g_stop="64101" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="184" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64492" g_stop="64593" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="286" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64686" g_stop="64760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="361" r_length="75" r_score="0.933"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="0.94"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65031" g_stop="65420" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="727" r_length="366" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="737" polyA_stop="747"/>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E435654" ref_strand="-">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E435654" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62506" e_stop="62565"/>
          <exon e_start="64021" e_stop="64101"/>
          <exon e_start="64492" e_stop="64593"/>
          <exon e_start="64686" e_stop="64760"/>
          <exon e_start="65031" e_stop="65420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATTAGAAGTTCCAAAAATTTGTTTTCATGAAGAATGTTCCACCACACCTCACTCACTTAGTTCATATTTCGTGTTTGCTAGTACTGTTGATACATTACTGCTTCCTATGGTGTATGTGGTGAAAATAGGGAGTGTTACAATGAAATTCTTTCGTTCTGTTATTTATACGTCAATGCCATTCTGTGATGCTTAGGTTTAGCATTCTGTTTTAGGGTGTCTTAAAGGAACAATACACATGTCTATATGTTTGTGTCATATTGACTTGGCAGTGGTGGTGGCTATTGGAAATGTTAAAATAGTCCGTGCTAAATAAGCTGAACTGAACTTTTTATATGCTTAGTATTCTCCAGTAGAGTTGGCTGATGTTAACAGAAAACTATAATTATTATGAAGACATGACGAAGATTTAGTACTTGGTATATCCTTACCTGTGTTCTGGACACCATCCAATTTCAAAAATCTCAGTCTATGTTCTCTTTGGTTTTAGTTTAATTTCGTTTTACAAGTGGGCCATCTATTTTCGGTAGGCGTTTCCTCTAGTTAAGTTGCAAAGGGGTTCATATGGCAGATTAGAAGTAATATAACTAATAAATAACTGATAACTATCATTTAGTTCTAACTTTAGGTGTTATACAGTTGTCAGAGGGAATACATATCTACAAGTCCATGCAAACATTTAAGCAAAAGTCTAGTAATTGTTGAAATTTGATTTTGAGGTTGCCATATTCTACACTTTCATCTTTTATTTAATGTGAATTGTGAACTATTGTATTTAACCGGAGAAAACATTCATGTTTACTACTTATTTGATGAATATTTTTTCTTTTCCATGTGGAAAATACTCACTCTTGCGAGGAGATTATAGCTGCTATTTCAATCTGATCATTATTCCTGCTGCTAACAATTTTCAAGTCCTCTAGGTGTCAAATTTTGTGCTTTATTTTGTTCTTTTTTCTTTTTTTCAGATGAATGTGACACTACCCTAATATAACTCTATGGGGCTTGTCTTTAATACGTTAAGCTGTTTGTTCATTTTTGCTCTTTCGCTTTCATAGGTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAACAGCAGTTATTCTTTGCACTTACTAGGCCAAACATGTCTCTCATTCATCATCTTCTTAAATTGCAA</genome_strand>
        <mrna_strand>CCAGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCTCGGCAATATATTGTCTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTTTTACTAGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTGATAGTCTTCAAGTATAAGAAGAAAAAAAATTACAGAAGGAACATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAGATTACATCCAAA---------T-T----A-CTG-TT--T--T--C--TCAGGATTATGTAGTTTTGTATAGACCGAGGAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACTTCATCTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTTCAGAAACCTCTTTTTGATTGAACGCCAATTATTCTTTGCACTTACTAGGCCAAACATGTCTGTCATTCATAATCTTCTTAAATTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370487" ref_strand="+" ref_description="SGN-E370487 [TUS-29-E11](-)">
      <seq>ggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggtgttacttgtgggaacaaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccacgctgttgttgaagagcagttgaaagacaagaaggttatcgtcttcaagtataagaagaaaaagaactacagaaggaatattggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgcagacctagaagcagccaagtgacttttaggctcaaaattacgtccaaattgctgttttctcaacatctgcttaatagtgcctttcaggattatgtagttttgtatagaccgagaaagcaatgacagaaatgagttttggaaggcgcatttaacctcatgttctgttgtaatttccatccattttgtttctttgcatgtattatttggttgagcaatgtacttgagttttggatatttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63773" stop="65638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64073" g_stop="64101" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390">
            <donor d_prob="0.927" d_score="0.00"/>
            <acceptor a_prob="0.731" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64492" g_stop="64593" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="132" r_length="103" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64686" g_stop="64760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="207" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65031" g_stop="65338" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="515" r_length="308" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65339" i_stop="65558" i_length="220">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.077" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65559" g_stop="65568" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="525" r_length="10" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E370487" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64073" e_stop="64101"/>
          <exon e_start="64492" e_stop="64593"/>
          <exon e_start="64686" e_stop="64760"/>
          <exon e_start="65031" e_stop="65338"/>
          <exon e_start="65559" e_stop="65568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAAC-AAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAACAGCAGTTATTCTTTGCACTTACTAGGCCAAACATGTCTCTCATTCATCATCTTCTTAAATTGCAAGTGATTATTATGACCTCTTTATCTTCTTCTCAAGTACCAGACATGTCTGTTCATGTCATAGCATTTATGTGTAAATTGAGGGTTGAGAGATTGTTAAACCTAACACGTTATCGTAGACTTGAGGGAATTAATTTTCAGAAAGTAAAAA</genome_strand>
        <mrna_strand>GGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGACAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTCTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGGATATTTAAAAAA............................................................................................................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203322" ref_strand="+" ref_description="SGN-E203322 [cLEB-3-J1](-)">
      <seq>acttgtgggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccacgctgttgttgaagagcagttgaaagataagaaggttatcgtcttcaagtataagaagaaaaagaactacagaaggaatattggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgcagacctagaagcagccaagtgacttttaggctcaaaattacgtccaaattgctgttttctcaacatctgcttaatagtgcctttcaggattatgtagttttgtatagaccgagaaagcaatgacagaaatgagttttggaaggcgcatttaacctcatgttttgttgtaatttccatccattttgtttctttgcatgtattatttggttgagcaatgtacttgagttttgaatattgaagaaacctctttttgactgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64212" stop="65656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64512" g_stop="64593" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64686" g_stop="64760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="157" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65031" g_stop="65356" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="483" r_length="326" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="484" polyA_stop="500"/>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E203322" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64512" e_stop="64593"/>
          <exon e_start="64686" e_stop="64760"/>
          <exon e_start="65031" e_stop="65356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAACA</genome_strand>
        <mrna_strand>ACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404889" ref_strand="+" ref_description="SGN-E404889 [PPC-15-N9]">
      <seq>caaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccatgctgttgttgaagagcagttgaaagataagaaggttatcgtcttcaagtataagaagaaaaagaactacagaaggaacattggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgcagacctagaagcagccaagtgacttttaggctcaagattacatccaaattactgttttctcaagattatgtagttttgtatagaccgaggaagcaatgacagaaatgagttttggaaggcgcatttaacttcatcttttgttgtaatttccatccattttgtttctttgcatgtattatttggttgagcaatgtacttgagttttgaatatttcagaaacctctttttgattgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64223" stop="65656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64523" g_stop="64593" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64686" g_stop="64760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="146" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65031" g_stop="65356" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="448" r_length="302" r_score="0.896"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65357" i_stop="65558" i_length="202">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.077" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65559" g_stop="65570" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="460" r_length="12" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E404889" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.052" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64523" e_stop="64593"/>
          <exon e_start="64686" e_stop="64760"/>
          <exon e_start="65031" e_stop="65356"/>
          <exon e_start="65559" e_stop="65570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAACAGCAGTTATTCTTTGCACTTACTAGGCCAAACATGTCTCTCATTCATCATCTTCTTAAATTGCAAGTGATTATTATGACCTCTTTATCTTCTTCTCAAGTACCAGACATGTCTGTTCATGTCATAGCATTTATGTGTAAATTGAGGGTTGAGAGATTGTTAAACCTAACACGTTATCGTAGACTTGAGGGAATTAATTTTCAGAAAGTAAAAACA</genome_strand>
        <mrna_strand>CAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCATGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAACATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAGATTACATCCAAA---------T-T----A-CTG-TT--T--T--C--TCAAGATTATGTAGTTTTGTATAGACCGAGGAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACTTCATCTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTTCAGAAACCTCTTTTTGATTGAAAA..........................................................................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234545" ref_strand="+" ref_description="SGN-E234545 [cLEL-6-J9](-)">
      <seq>aaaccagtggtgccaaatgcaacagtccacgctgttgttgaagagcagttgaaagataagaaggttatcgtcttcaagtataagaagaaaaagaactacagaaggaatattggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgcagacctagaagcagccaagtgacttttaggctcaaaattacgtccaaattgctgttttctcaacatctgcttaatagtgcctttcaggattatgtagttttgtatagaccgagaaagcaatgacagaaatgagttttggaaggcgcatttaacctcatgttttgttgtaatttccatccattttgtttctttgcatgtattatttggttgagcaatgtacttgagttttgaatattgaagaaacctctttttgactgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64246" stop="65656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64546" g_stop="64593" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64686" g_stop="64760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="123" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65031" g_stop="65356" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="449" r_length="326" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="450" polyA_stop="463"/>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E234545" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64546" e_stop="64593"/>
          <exon e_start="64686" e_stop="64760"/>
          <exon e_start="65031" e_stop="65356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAACA</genome_strand>
        <mrna_strand>AAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292748" ref_strand="+" ref_description="SGN-E292748 [cLET-11-B14]">
      <seq>gggctgcaggcaaatgcaacactccacgctgttgttgaagagcagttgaaagataagaaggttatcgtcttcaagtataagaagaaaaagaactacagaaggaatattggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgcagacctagaagcagccaagtgacttttaggctcaaaattacatccaaattgctgttttctcaacatctgcttaatagtgcctttcaggattatgtagttttgtatagaccgagaaagcaatgacagaaatgagttttggaaggcgcatttaacctcatgttttgttgtaatttccatccattttgtttctttgcatgtattatttgggtgagcaatgtacttgagttttgaatattgaagaaacctctttttgactgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64253" stop="65656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64553" g_stop="64593" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="45" r_length="41" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="0.90"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64686" g_stop="64760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="120" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65031" g_stop="65363" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="453" r_length="333" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E292748" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64553" e_stop="64593"/>
          <exon e_start="64686" e_stop="64760"/>
          <exon e_start="65031" e_stop="65363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAACAGCAGTTA</genome_strand>
        <mrna_strand>TGCAGGCAAATGCAACACTCCACGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACATCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGGTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289775" ref_strand="+" ref_description="SGN-E289775 [cLET-9-A14]">
      <seq>aaatgcaacagtccacgctgttgttgaagagcagttgaaagataagaaggttatcgtcttcaagtataagaagaaaaagaactacagaaggaatattggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgcagacctagaagcagccaagtgacttttaggctcaaaattacgtccaaattgctgttttctcaacatctgcttaatagtgcctttcaggattatgtagttttgtatagaccgagaaagcaatgacagaaatgagttttggaaggcgcatttaacctcatgttttgttgtaatttccatccattttgtttctttgcatgtattatttgggtgagcaatgtacttgagttttgaatattgaagaaacctctttttgactgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64260" stop="65656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64560" g_stop="64593" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64686" g_stop="64760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="109" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65031" g_stop="65363" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="442" r_length="333" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E289775" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64560" e_stop="64593"/>
          <exon e_start="64686" e_stop="64760"/>
          <exon e_start="65031" e_stop="65363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAACAGCAGTTA</genome_strand>
        <mrna_strand>AAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGGTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615769" ref_strand="-" ref_description="SGN-E615769 [65571]">
      <seq>gttgaaagataagaaggtgatagtcttcaagtataagaagaaaaaaaattacagaaggaacatgggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgcagacctagaagcagccaagtgacttttaggctcaagattacatccaaattactgttttctcaggattatgtanttttgtatagaccgaggaagcaatgacagaaatgagttttggaaggcgcatttaacttcatcttttgttgtaatttccatccattttgtttctttgcatgtattatttggttgagcaatgtacttgagttttgaataaaaaaaaataaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64385" stop="65629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64685" g_stop="64760" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="0.92"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65031" g_stop="65328" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="350" r_length="274" r_score="0.899"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="351" polyA_stop="380"/>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E615769" ref_strand="-">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E615769" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="64685" e_stop="64760"/>
          <exon e_start="65031" e_stop="65328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAAT</genome_strand>
        <mrna_strand>GTTGAAAGATAAGAAGGTGATAGTCTTCAAGTATAAGAAGAAAAAAAATTACAGAAGGAACATGGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAGATTACATCCAAA---------T-T----A-CTG-TT--T--T--C--TCAGGATTATGTANTTTTGTATAGACCGAGGAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACTTCATCTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235217" ref_strand="+" ref_description="SGN-E235217 [cLEL-6-J9](-)">
      <seq>ggttatcgtcttcaagtataagaagaaaaagaactacagaaggaatattggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgcagacctagaagcagccaagtgacttttaggctcaaaattacgtccaaattgctgttttctcaacatctgcttaatagtgcctttcaggattatgtagttttgtatagaccgagaaagcaatgacagaaatgagttttggaaggcgcatttaacctcatgttttgttgtaatttccatccattttgtttctttgcatgtattatttggttgagcaatgtacttgagttttgaatattgaagaaacctctttttgactgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64400" stop="65656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64700" g_stop="64760" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65031" g_stop="65356" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="387" r_length="326" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="388" polyA_stop="401"/>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E235217" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64700" e_stop="64760"/>
          <exon e_start="65031" e_stop="65356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAACA</genome_strand>
        <mrna_strand>GGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392626" ref_strand="+" ref_description="SGN-E392626 [TUS-35-L4](-)">
      <seq>ctcaaaattacgtccaatttgctgttttctcaacatttgcttaatagtgcctttcaggattatgtagttttgtatagaccgagaaagcaatgacagaaatgagttttggaaggcgcatttaacctcatgttttgttgaaatttccatccattttgtttctttgcatgtattatttggttgagcaatgtacttgagttttgaatattgaaaaaacctctttttgactgaacacgcagttattctttgcaaatagtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64826" stop="65679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65126" g_stop="65369" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="255" polyA_stop="270"/>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E392626" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>244</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65126" e_stop="65369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAACA-GCAGTTATTCTTT</genome_strand>
        <mrna_strand>CTCAAAATTACGTCCAATTTGCTGTTTTCTCAACATTTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGAAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAAAAACCTCTTTTTGACTGAACACGCAGTTATTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392633" ref_strand="+" ref_description="SGN-E392633 [TUS-35-N6](-)">
      <seq>attacgttcaaattgcggttttctcaacatttgcttaatagtgcctttcaggattatgtagttttgtatagaccgagaaagcaatgacagaaatgagttttggaaggcgcatttaacctcatgttttgttgtaatttccatccattttgtttctttgcatgtattatttggttgagcaatgtacttgagttttgaatattgaaaaaacctctttttgactgaacacgcagttattctttgcaataagtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64832" stop="65679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65132" g_stop="65369" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="249" polyA_stop="264"/>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E392633" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65132" e_stop="65369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAACA-GCAGTTATTCTTT</genome_strand>
        <mrna_strand>ATTACGTTCAAATTGCGGTTTTCTCAACATTTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAAAAACCTCTTTTTGACTGAACACGCAGTTATTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539778" ref_strand="+" ref_description="SGN-E539778 [TUS-59-L10]">
      <seq>gctggttgtggcctgaaaaattgagattcttccaggcagagatagccaagcgtcgggataagttgctcaactatatgttgtttctgagaataactccaacattgccaaatcttttcatcaacttggcatctccaatagtggatataccattccatattttcttctcggccacattggttggtctcattccagccgcatatattacagtcaaggctggcctagctcttggtgagctgaagtctgttaaagatctatacgatctgaagaccttgtccgtgctcttcctcattggttttatctcgatattacctaccatcttgaagaggaagaaaatatacgaataaagctccccccagaaggccaattcggatcctcttggaaagtaacttatagaagatatagtttaattttattgtcggagcaaattggagaggcagaggcaagacatagcaagatagatctaatttgaaatctacatttgactgtccaatccactggtagaatagtggaaaacgttgtgttctttaccaactccttatgttttaccctctgttagtctgtttctgacccgaacttacctgtagtattgtttaaggtaatgtcaaatgtagcagacagattttgatatgaattctgatttcagattgatcttatagtcatttcactgttcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="-" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67505" stop="65344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67205" g_stop="67165" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67164" i_stop="67060" i_length="105">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67059" g_stop="66889" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="212" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66888" i_stop="66103" i_length="786">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66102" g_stop="65642" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="673" r_length="461" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="-" ref_id="SGN-E539778" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67205" e_stop="67165"/>
          <exon e_start="67059" e_stop="66889"/>
          <exon e_start="66102" e_stop="65642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGTTGTGGCCTGAAAAATTGAGATTCTTCCAGGCAGAGGTTTGTGATGTTCTGAAACTGTTTACTGTTAATGTGCTGCTGATCTTCTAATGTCATGCTTCCTTCATTTTCTGGCACATAGTAATGTGTAACATGTGGTTTCAGATAGCCAAGCGTCGGGATAAGTTGCTCAACTATATGTTGTTTCTGAGAATAACTCCAACATTGCCAAATCTTTTCATCAACTTGGCATCTCCAATAGTGGATATACCATTCCATATTTTCTTCTCGGCCACATTGGTTGGTCTCATTCCAGCCGCATATATTACAGTCAAGGTAAACTTTCTTCAGCTGGTGGTGGTTTTCCCCGTCATGCTTGTCCGTATTTGATGTCTTTCAACTGTATTACTCAATTTTGCTCTGAAATGATTGGTATAATGCATCTAGAGGACATGCTTTCTTAAAAAAGTAATTATCTTCCTTTGTGTGGTGACTCTCTTACAACAACATACCCTGTGAAATCTCACAGTTGGGTGTGGGAGGTTTGAGTCGGGAGTGTATGCAGCCCCTACTCGTGGAGGTAAAGAGGCTATTTCCCAACTCTCTAACCATCCAAATACTCTTTTAAAAAACGCAAGAAGCTGACGGCGTATTCTCTTTATAAATGGGTAAATCAGTTCCAGGATGTCATGCTTGGCACTAGTATAGATGTTGCAATAAATGGTAGAAGTACACCAACACAATCTAACTTTGGTAGCATTTAGAGTTAGCCTCTTCAGGTGATGTGGAGTCCCATAATGTGATAGTAATGGTGAAGGTTCTTTGTGTGTTACTTCCATAAAAAGACAAAAACTATACTTGGTGCGTACATTAATTAAAAAATCATCAAGCTCATTTTCTGAAATTGAGTTAAAATCATGTGAGCTGTTGACGGCAGCATATCATCTAAAACTATCCAAGTGAATAATTTGGCAATGCATCTCTCTTGTCTTGTCTATGAACTAACTAAGATGATACATCTTTTGTTGAAGTTCGCAGTGCCAATATCACTTGTGAGACCTGAGTAATCACTCCAGTATATTTTTGTAATCTCATATGTGATGTTTTATTTTAACTTGTCAGGCTGGCCTAGCTCTTGGTGAGCTGAAGTCTGTTAAAGATCTATACGATCTGAAGACCTTGTCCGTGCTCTTCCTCATTGGTTTTATCTCGATATTACCTACCATCTTGAAGAGGAAGAAAATATACGAATAAAGCTCCCCCCAGAAGGCCAATTCGGATCCTCTTGGAAAGTAACTTATAGAAGATATAGTTTAATTTTATTGTCGGAGCAAATTGGAGAGGCAGAGGCAAGACATAGCAAGATAGATCTAATTTGAAATCTACATTTGACTGTCCAATCCACTGGTAGAATAGTGGAAAACGTTGTGTTCTTTACCAACTCCTTATGTTTTACCCTCTGTTAGTCTGTTTCTGACCCGAACTTACCTGTAGTATTGTTTAAGGTAATGTCAAATGTAGCAGACAGATTTTGATATGAATTCTGATTCAAGATTGATCTTATAGTCATTTCACTGTTCAGT</genome_strand>
        <mrna_strand>GCTGGTTGTGGCCTGAAAAATTGAGATTCTTCCAGGCAGAG.........................................................................................................ATAGCCAAGCGTCGGGATAAGTTGCTCAACTATATGTTGTTTCTGAGAATAACTCCAACATTGCCAAATCTTTTCATCAACTTGGCATCTCCAATAGTGGATATACCATTCCATATTTTCTTCTCGGCCACATTGGTTGGTCTCATTCCAGCCGCATATATTACAGTCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCCTAGCTCTTGGTGAGCTGAAGTCTGTTAAAGATCTATACGATCTGAAGACCTTGTCCGTGCTCTTCCTCATTGGTTTTATCTCGATATTACCTACCATCTTGAAGAGGAAGAAAATATACGAATAAAGCTCCCCCCAGAAGGCCAATTCGGATCCTCTTGGAAAGTAACTTATAGAAGATATAGTTTAATTTTATTGTCGGAGCAAATTGGAGAGGCAGAGGCAAGACATAGCAAGATAGATCTAATTTGAAATCTACATTTGACTGTCCAATCCACTGGTAGAATAGTGGAAAACGTTGTGTTCTTTACCAACTCCTTATGTTTTACCCTCTGTTAGTCTGTTTCTGACCCGAACTTACCTGTAGTATTGTTTAAGGTAATGTCAAATGTAGCAGACAGATTTTGATATGAATTCTGATTTCAGATTGATCTTATAGTCATTTCACTGTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396947" ref_strand="+" ref_description="SGN-E396947 [TUS-44-F13](-)">
      <seq>ttttttctgtttaaattaattggcagacctttggttagctggtgggggcctgaaaaattgagattcttccaggcagagatagccaagcgtcgggataagttgctcaactatatgttgtttctgagaataactccaacattgccaaatcttttcatcaacttggcatctccaatagtggatataccattccatattttcttctcggccacattggttggtctcattccagccgcatatattacagtcaaggctggcctagctcttggtgagctgaagtctgttaaagatctatacgatctgaagaccttgtccgtgctcttcctcattggttttatctcgatattacctaccatcttgaagaggaagaaaatatacgaataaagctccccccagaaggccaattcggatcctcttggaaagtaacttatagaagatatagtttaattttattgtcggagcaaattggagaggcagaggcaagacatagcaagatagatctaatttgaaatctacatttgactgtccaatccactggtagaatagtggaaaacgttgtgttctttaccaactccttatgttttaccctctgttagtctgtttttgacccgaacttacctgtagtattgtttaaggtaatgtcaaatgtagcagacagattttgatatgaattctgattcaagattgatcttatagtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="-" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67542" stop="65356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67242" g_stop="67165" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67164" i_stop="67060" i_length="105">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67059" g_stop="66889" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="249" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66888" i_stop="66103" i_length="786">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66102" g_stop="65657" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="695" r_length="446" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="696" polyA_stop="705"/>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="-" ref_id="SGN-E396947" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67242" e_stop="67165"/>
          <exon e_start="67059" e_stop="66889"/>
          <exon e_start="66102" e_stop="65657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTGTCTAAATTAATTGGCAGACCTTTGGTTAGCTGGTTGTGGCCTGAAAAATTGAGATTCTTCCAGGCAGAGGTTTGTGATGTTCTGAAACTGTTTACTGTTAATGTGCTGCTGATCTTCTAATGTCATGCTTCCTTCATTTTCTGGCACATAGTAATGTGTAACATGTGGTTTCAGATAGCCAAGCGTCGGGATAAGTTGCTCAACTATATGTTGTTTCTGAGAATAACTCCAACATTGCCAAATCTTTTCATCAACTTGGCATCTCCAATAGTGGATATACCATTCCATATTTTCTTCTCGGCCACATTGGTTGGTCTCATTCCAGCCGCATATATTACAGTCAAGGTAAACTTTCTTCAGCTGGTGGTGGTTTTCCCCGTCATGCTTGTCCGTATTTGATGTCTTTCAACTGTATTACTCAATTTTGCTCTGAAATGATTGGTATAATGCATCTAGAGGACATGCTTTCTTAAAAAAGTAATTATCTTCCTTTGTGTGGTGACTCTCTTACAACAACATACCCTGTGAAATCTCACAGTTGGGTGTGGGAGGTTTGAGTCGGGAGTGTATGCAGCCCCTACTCGTGGAGGTAAAGAGGCTATTTCCCAACTCTCTAACCATCCAAATACTCTTTTAAAAAACGCAAGAAGCTGACGGCGTATTCTCTTTATAAATGGGTAAATCAGTTCCAGGATGTCATGCTTGGCACTAGTATAGATGTTGCAATAAATGGTAGAAGTACACCAACACAATCTAACTTTGGTAGCATTTAGAGTTAGCCTCTTCAGGTGATGTGGAGTCCCATAATGTGATAGTAATGGTGAAGGTTCTTTGTGTGTTACTTCCATAAAAAGACAAAAACTATACTTGGTGCGTACATTAATTAAAAAATCATCAAGCTCATTTTCTGAAATTGAGTTAAAATCATGTGAGCTGTTGACGGCAGCATATCATCTAAAACTATCCAAGTGAATAATTTGGCAATGCATCTCTCTTGTCTTGTCTATGAACTAACTAAGATGATACATCTTTTGTTGAAGTTCGCAGTGCCAATATCACTTGTGAGACCTGAGTAATCACTCCAGTATATTTTTGTAATCTCATATGTGATGTTTTATTTTAACTTGTCAGGCTGGCCTAGCTCTTGGTGAGCTGAAGTCTGTTAAAGATCTATACGATCTGAAGACCTTGTCCGTGCTCTTCCTCATTGGTTTTATCTCGATATTACCTACCATCTTGAAGAGGAAGAAAATATACGAATAAAGCTCCCCCCAGAAGGCCAATTCGGATCCTCTTGGAAAGTAACTTATAGAAGATATAGTTTAATTTTATTGTCGGAGCAAATTGGAGAGGCAGAGGCAAGACATAGCAAGATAGATCTAATTTGAAATCTACATTTGACTGTCCAATCCACTGGTAGAATAGTGGAAAACGTTGTGTTCTTTACCAACTCCTTATGTTTTACCCTCTGTTAGTCTGTTTCTGACCCGAACTTACCTGTAGTATTGTTTAAGGTAATGTCAAATGTAGCAGACAGATTTTGATATGAATTCTGATTCAAGATTGATCTTATAGTC</genome_strand>
        <mrna_strand>TTTTTTCTGTTTAAATTAATTGGCAGACCTTTGGTTAGCTGGTGGGGGCCTGAAAAATTGAGATTCTTCCAGGCAGAG.........................................................................................................ATAGCCAAGCGTCGGGATAAGTTGCTCAACTATATGTTGTTTCTGAGAATAACTCCAACATTGCCAAATCTTTTCATCAACTTGGCATCTCCAATAGTGGATATACCATTCCATATTTTCTTCTCGGCCACATTGGTTGGTCTCATTCCAGCCGCATATATTACAGTCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCCTAGCTCTTGGTGAGCTGAAGTCTGTTAAAGATCTATACGATCTGAAGACCTTGTCCGTGCTCTTCCTCATTGGTTTTATCTCGATATTACCTACCATCTTGAAGAGGAAGAAAATATACGAATAAAGCTCCCCCCAGAAGGCCAATTCGGATCCTCTTGGAAAGTAACTTATAGAAGATATAGTTTAATTTTATTGTCGGAGCAAATTGGAGAGGCAGAGGCAAGACATAGCAAGATAGATCTAATTTGAAATCTACATTTGACTGTCCAATCCACTGGTAGAATAGTGGAAAACGTTGTGTTCTTTACCAACTCCTTATGTTTTACCCTCTGTTAGTCTGTTTTTGACCCGAACTTACCTGTAGTATTGTTTAAGGTAATGTCAAATGTAGCAGACAGATTTTGATATGAATTCTGATTCAAGATTGATCTTATAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395538" ref_strand="+" ref_description="SGN-E395538 [TUS-43-E14](-)">
      <seq>cattccagccgcatatattacagtcaaggctggcctagctcttggtgagctgaagtctgttaaagatctatacgatctgaagaccttgtccgtgctcttcctcattggttttatctcgatattacctaccatcttgaagaggaagaaaatatacgaataaagctccccccagaaggccaattcggatcctcttggaaagtaacttatagaagatatagtttaattttattgtcggagcaaattggagaggcagaggcaagacatagcaagatagatctaatttgaaatctacatttgactgtccaatccactggtagaatagtggaaaacgttgtgttctttaccaactccttatgttttaccctctgttagtctgtttctgacccgaacttacctgtagtattgtttaaggtaatgtcaaatgtagcagacagattttgatatgaattctgattcaagattgatcttatagtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="-" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67216" stop="65356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66916" g_stop="66889" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66888" i_stop="66103" i_length="786">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66102" g_stop="65657" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="474" r_length="446" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="475" polyA_stop="484"/>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="-" ref_id="SGN-E395538" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66916" e_stop="66889"/>
          <exon e_start="66102" e_stop="65657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCCAGCCGCATATATTACAGTCAAGGTAAACTTTCTTCAGCTGGTGGTGGTTTTCCCCGTCATGCTTGTCCGTATTTGATGTCTTTCAACTGTATTACTCAATTTTGCTCTGAAATGATTGGTATAATGCATCTAGAGGACATGCTTTCTTAAAAAAGTAATTATCTTCCTTTGTGTGGTGACTCTCTTACAACAACATACCCTGTGAAATCTCACAGTTGGGTGTGGGAGGTTTGAGTCGGGAGTGTATGCAGCCCCTACTCGTGGAGGTAAAGAGGCTATTTCCCAACTCTCTAACCATCCAAATACTCTTTTAAAAAACGCAAGAAGCTGACGGCGTATTCTCTTTATAAATGGGTAAATCAGTTCCAGGATGTCATGCTTGGCACTAGTATAGATGTTGCAATAAATGGTAGAAGTACACCAACACAATCTAACTTTGGTAGCATTTAGAGTTAGCCTCTTCAGGTGATGTGGAGTCCCATAATGTGATAGTAATGGTGAAGGTTCTTTGTGTGTTACTTCCATAAAAAGACAAAAACTATACTTGGTGCGTACATTAATTAAAAAATCATCAAGCTCATTTTCTGAAATTGAGTTAAAATCATGTGAGCTGTTGACGGCAGCATATCATCTAAAACTATCCAAGTGAATAATTTGGCAATGCATCTCTCTTGTCTTGTCTATGAACTAACTAAGATGATACATCTTTTGTTGAAGTTCGCAGTGCCAATATCACTTGTGAGACCTGAGTAATCACTCCAGTATATTTTTGTAATCTCATATGTGATGTTTTATTTTAACTTGTCAGGCTGGCCTAGCTCTTGGTGAGCTGAAGTCTGTTAAAGATCTATACGATCTGAAGACCTTGTCCGTGCTCTTCCTCATTGGTTTTATCTCGATATTACCTACCATCTTGAAGAGGAAGAAAATATACGAATAAAGCTCCCCCCAGAAGGCCAATTCGGATCCTCTTGGAAAGTAACTTATAGAAGATATAGTTTAATTTTATTGTCGGAGCAAATTGGAGAGGCAGAGGCAAGACATAGCAAGATAGATCTAATTTGAAATCTACATTTGACTGTCCAATCCACTGGTAGAATAGTGGAAAACGTTGTGTTCTTTACCAACTCCTTATGTTTTACCCTCTGTTAGTCTGTTTCTGACCCGAACTTACCTGTAGTATTGTTTAAGGTAATGTCAAATGTAGCAGACAGATTTTGATATGAATTCTGATTCAAGATTGATCTTATAGTC</genome_strand>
        <mrna_strand>CATTCCAGCCGCATATATTACAGTCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCCTAGCTCTTGGTGAGCTGAAGTCTGTTAAAGATCTATACGATCTGAAGACCTTGTCCGTGCTCTTCCTCATTGGTTTTATCTCGATATTACCTACCATCTTGAAGAGGAAGAAAATATACGAATAAAGCTCCCCCCAGAAGGCCAATTCGGATCCTCTTGGAAAGTAACTTATAGAAGATATAGTTTAATTTTATTGTCGGAGCAAATTGGAGAGGCAGAGGCAAGACATAGCAAGATAGATCTAATTTGAAATCTACATTTGACTGTCCAATCCACTGGTAGAATAGTGGAAAACGTTGTGTTCTTTACCAACTCCTTATGTTTTACCCTCTGTTAGTCTGTTTCTGACCCGAACTTACCTGTAGTATTGTTTAAGGTAATGTCAAATGTAGCAGACAGATTTTGATATGAATTCTGATTCAAGATTGATCTTATAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284657" ref_strand="+" ref_description="SGN-E284657 [cLES-3-G17]">
      <seq>ctggttgtggcctgaaaaattgagattcttccaggcagagatagccaagcgtcgggataagttgctcaactatatgttgtttctgagaataactccaacattgccaaatcttttcatcaacttggcatctccaatagtggatataccattccatattttcttctcggccacattggttggtctcattccagccgcatatattacagtcaaggctggcctagctcttggtgagctgaagtctgttaaagatctatacgatctgaagaccttgtccgtgctcttcctcattggttttatctcgatattacctaccatcttgaagaggaagaaaatatacgaataaagctccccccagaaggccaattcggatcctcttggaaagtaacttatagaagatatagtttaattttattgtcggagcaaattggagaggcagaggcaagacatagcaagatagatctaatttgaaatctacatttgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="-" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67504" stop="65531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67204" g_stop="67165" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67164" i_stop="67060" i_length="105">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67059" g_stop="66889" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="211" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66888" i_stop="66103" i_length="786">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66102" g_stop="65831" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="483" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="-" ref_id="SGN-E284657" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67204" e_stop="67165"/>
          <exon e_start="67059" e_stop="66889"/>
          <exon e_start="66102" e_stop="65831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTTGTGGCCTGAAAAATTGAGATTCTTCCAGGCAGAGGTTTGTGATGTTCTGAAACTGTTTACTGTTAATGTGCTGCTGATCTTCTAATGTCATGCTTCCTTCATTTTCTGGCACATAGTAATGTGTAACATGTGGTTTCAGATAGCCAAGCGTCGGGATAAGTTGCTCAACTATATGTTGTTTCTGAGAATAACTCCAACATTGCCAAATCTTTTCATCAACTTGGCATCTCCAATAGTGGATATACCATTCCATATTTTCTTCTCGGCCACATTGGTTGGTCTCATTCCAGCCGCATATATTACAGTCAAGGTAAACTTTCTTCAGCTGGTGGTGGTTTTCCCCGTCATGCTTGTCCGTATTTGATGTCTTTCAACTGTATTACTCAATTTTGCTCTGAAATGATTGGTATAATGCATCTAGAGGACATGCTTTCTTAAAAAAGTAATTATCTTCCTTTGTGTGGTGACTCTCTTACAACAACATACCCTGTGAAATCTCACAGTTGGGTGTGGGAGGTTTGAGTCGGGAGTGTATGCAGCCCCTACTCGTGGAGGTAAAGAGGCTATTTCCCAACTCTCTAACCATCCAAATACTCTTTTAAAAAACGCAAGAAGCTGACGGCGTATTCTCTTTATAAATGGGTAAATCAGTTCCAGGATGTCATGCTTGGCACTAGTATAGATGTTGCAATAAATGGTAGAAGTACACCAACACAATCTAACTTTGGTAGCATTTAGAGTTAGCCTCTTCAGGTGATGTGGAGTCCCATAATGTGATAGTAATGGTGAAGGTTCTTTGTGTGTTACTTCCATAAAAAGACAAAAACTATACTTGGTGCGTACATTAATTAAAAAATCATCAAGCTCATTTTCTGAAATTGAGTTAAAATCATGTGAGCTGTTGACGGCAGCATATCATCTAAAACTATCCAAGTGAATAATTTGGCAATGCATCTCTCTTGTCTTGTCTATGAACTAACTAAGATGATACATCTTTTGTTGAAGTTCGCAGTGCCAATATCACTTGTGAGACCTGAGTAATCACTCCAGTATATTTTTGTAATCTCATATGTGATGTTTTATTTTAACTTGTCAGGCTGGCCTAGCTCTTGGTGAGCTGAAGTCTGTTAAAGATCTATACGATCTGAAGACCTTGTCCGTGCTCTTCCTCATTGGTTTTATCTCGATATTACCTACCATCTTGAAGAGGAAGAAAATATACGAATAAAGCTCCCCCCAGAAGGCCAATTCGGATCCTCTTGGAAAGTAACTTATAGAAGATATAGTTTAATTTTATTGTCGGAGCAAATTGGAGAGGCAGAGGCAAGACATAGCAAGATAGATCTAATTTGAAATCTACATTTGACT</genome_strand>
        <mrna_strand>CTGGTTGTGGCCTGAAAAATTGAGATTCTTCCAGGCAGAG.........................................................................................................ATAGCCAAGCGTCGGGATAAGTTGCTCAACTATATGTTGTTTCTGAGAATAACTCCAACATTGCCAAATCTTTTCATCAACTTGGCATCTCCAATAGTGGATATACCATTCCATATTTTCTTCTCGGCCACATTGGTTGGTCTCATTCCAGCCGCATATATTACAGTCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCCTAGCTCTTGGTGAGCTGAAGTCTGTTAAAGATCTATACGATCTGAAGACCTTGTCCGTGCTCTTCCTCATTGGTTTTATCTCGATATTACCTACCATCTTGAAGAGGAAGAAAATATACGAATAAAGCTCCCCCCAGAAGGCCAATTCGGATCCTCTTGGAAAGTAACTTATAGAAGATATAGTTTAATTTTATTGTCGGAGCAAATTGGAGAGGCAGAGGCAAGACATAGCAAGATAGATCTAATTTGAAATCTACATTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419042" ref_strand="+" ref_description="SGN-E419042 [STM-28-J10]">
      <seq>caacaacatatcttcctcttccacttttcattttctcccttcatcaagaatcaatggcttctactcttactactccaactctaactccaacaaatgatgttgatgatcatcaaagtcatgacaccacattctcaaccccacttttccggccaccaccaccgacgtctcgccggagtactccatcatctctctcttcatctccatctcactcttccaactcttcctttggatcatcactctctttccatgatattcttgatgatcataattcccctattagccctacaactcctcttcaattcccaaaaggtgtacccttttcttgggaaaaaattcctggaattccaaaacaaatattttccaagaaaaataacactactactactctaggtcaacttctcccattaatgccaccaccatgtggaaatggaaattatgttccaaataattcatccaagaaaattactagttttcttgatgagttttctccaagaaaaaatgttgctaaaagttttagaaaagatccattttttgctgcatttgtggagtgttctaaagatgatcaacaacaatatgatgatgacatttggaaaaattcttcaaaggtaccatctattagaagtttaagtgatagatttggattcattagcatgtatacttcttgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70937" stop="72190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71235" g_stop="71890" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="668" r_length="668" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E419042" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71235" e_stop="71890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAACATATCTTCCTCTTCCACTTTTCATTTTCTCCCTTCATCAAGAATCAATGGCTTCTACTCTTACTACTCCATCTCCAAC-A-AA-TGATGTTGATGATCATCATCAAAGTCATGACACCACATTCTCAACCCCACTTTTCCGGTCACCGCCACCGACGACTCGCCGGAGTACTCCACCATCTCTCTCTTCATCTCCATCTCACTCTTCCAACTCTTCCTTTGGATCATCACTCTCATTCCATGATATTCTTGATGATCATAACTCCCCTATTAGCCCTACAACTCCTCTTCAATTCCCAAAAGGTGTACCCTTTTCTTGGGAAAAAATTCCTGGAATTCCAAAACAAATATTTTCCAAGAAAAATAACACTACTACTTCTCTAGGTCAACTCCTCCCATTAATGCCACCACCTTGTGGAAATGG-AA--A---T---AATGGTTCATCCAAGAAAATTACTAGTTTTCTTGATGAGTTTTCTCCAAGAAAAAATGTTGCTAAAAGTTTTAGAAAAGATCCATTTTTTGCTGCATTTGTGGAGTGTTCTAAAGATGATCAACAACAATATGATGATGATATTTGGAAAAATTCTTCAAAGGTACCATCAATAAGAAGTTTAAGTGATAGATTTGGATTCATCAGCATGTATACATCTTGCAAA</genome_strand>
        <mrna_strand>CAACAACATATCTTCCTCTTCCACTTTTCATTTTCTCCCTTCATCAAGAATCAATGGCTTCTACTCTTACTACTCCAACTCTAACTCCAACAAATGATGTTGATGATCATCAAAGTCATGACACCACATTCTCAACCCCACTTTTCCGGCCACCACCACCGACGTCTCGCCGGAGTACTCCATCATCTCTCTCTTCATCTCCATCTCACTCTTCCAACTCTTCCTTTGGATCATCACTCTCTTTCCATGATATTCTTGATGATCATAATTCCCCTATTAGCCCTACAACTCCTCTTCAATTCCCAAAAGGTGTACCCTTTTCTTGGGAAAAAATTCCTGGAATTCCAAAACAAATATTTTCCAAGAAAAATAACACTACTACTACTCTAGGTCAACTTCTCCCATTAATGCCACCACCATGTGGAAATGGAAATTATGTTCCAAATAATTCATCCAAGAAAATTACTAGTTTTCTTGATGAGTTTTCTCCAAGAAAAAATGTTGCTAAAAGTTTTAGAAAAGATCCATTTTTTGCTGCATTTGTGGAGTGTTCTAAAGATGATCAACAACAATATGATGATGACATTTGGAAAAATTCTTCAAAGGTACCATCTATTAGAAGTTTAAGTGATAGATTTGGATTCATTAGCATGTATACTTCTTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443366" ref_strand="+" ref_description="SGN-E443366 [cSTA-37-B1]">
      <seq>caacaacatatcttcctcttccacttttcattttctgcctccataaagaatcaatggcttctactcttactactccaactctaactccaacaaatgatgttgatgatcatcaaagtcatgacaccacattctcaaccccacttttccggccaccaccaccgacgtctcgccggagtactccatcatctctctgttgatctacatctcactcttccaactcttcctttggatcatcactctctttccatgatattcttgatgatcataattcccctattagccctacaactcctcttcaattcccaaaaggtgtacccttttcttgggaaaaaattcctggaattccaaaacaaatattttccaagaaaaataacactacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70937" stop="71912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71235" g_stop="71612" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E443366" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71235" e_stop="71612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAACATATCTTCCTCTTCCACTTTTCATTTTCTCCCTTCATCAAGAATCAATGGCTTCTACTCTTACTACTCCATCTCCAACA--AA-TGATGTTGATGATCATCATCAAAGTCATGACACCACATTCTCAACCCCACTTTTCCGGTCACCGCCACCGACGACTCGCCGGAGTACTCCACCATCTCTCTCTTCATCTCCATCTCACTCTTCCAACTCTTCCTTTGGATCATCACTCTCATTCCATGATATTCTTGATGATCATAACTCCCCTATTAGCCCTACAACTCCTCTTCAATTCCCAAAAGGTGTACCCTTTTCTTGGGAAAAAATTCCTGGAATTCCAAAACAAATATTTTCCAAGAAAAATAACACTACTA</genome_strand>
        <mrna_strand>CAACAACATATCTTCCTCTTCCACTTTTCATTTTCTGCCTCCATAAAGAATCAATGGCTTCTACTCTTACTACTCCAACTCTAACTCCAACAAATGATGTTGATGATCATCAAAGTCATGACACCACATTCTCAACCCCACTTTTCCGGCCACCACCACCGACGTCTCGCCGGAGTACTCCATCATCTCTCTGTTGATCTACATCTCACTCTTCCAACTCTTCCTTTGGATCATCACTCTCTTTCCATGATATTCTTGATGATCATAATTCCCCTATTAGCCCTACAACTCCTCTTCAATTCCCAAAAGGTGTACCCTTTTCTTGGGAAAAAATTCCTGGAATTCCAAAACAAATATTTTCCAAGAAAAATAACACTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620300" ref_strand="+" ref_description="SGN-E620300 [71000]">
      <seq>tatcctcttccacttttcattttctcccttcatcaagaatcaatggcttctactcttactactccaactccaactccaacaaatgatgttgatgatcatcaaagtcatgacaccacattctcaaccccacttttccggccaccaccaccgacgactcgccggagtactccatcatctctctcttcatctccatctcactcttccaactcttcctttggatcatcactctctttccatgatattcttgatgatcataattcccctattagccctacaactcctcttcaattcccaaaaggtgtacccttttcttgggaaaaaattcctggaattccaaaacaaatattttccaagaaaaataacactactactactctaggtcaacttctcccattaatgccaccaccatgtggaaatggaaattatgttccaaataattcatccaagaaaattactagttttcttgatgagttttctccaagaaaaaatgttgctaaaagttttagaaaagatccattttttgctgcatttgtggagtgttctaaagatgatcaacaacaatatgatgatgacatttggaaaaattcttcaaaggtaccatctattagaagtttaagtgatagatttggattcattagcatgtatacttcttgcaaaagaacttgtacagtctctgaatccattgtttatcttccaagatcaagaaataattatagtaggaagtactagtgatcacaagtcaataaagtcctagatcgaagacaggcaaatgcaaagtcagaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70948" stop="72291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71246" g_stop="71990" g_length="745"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E620300" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71246" e_stop="71990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTCTTCCACTTTTCATTTTCTCCCTTCATCAAGAATCAATGGCTTCTACTCTTACTACTCCATCTCCAA---CAAATGATGTTGATGATCATCATCAAAGTCATGACACCACATTCTCAACCCCACTTTTCCGGTCACCGCCACCGACGACTCGCCGGAGTACTCCACCATCTCTCTCTTCATCTCCATCTCACTCTTCCAACTCTTCCTTTGGATCATCACTCTCATTCCATGATATTCTTGATGATCATAACTCCCCTATTAGCCCTACAACTCCTCTTCAATTCCCAAAAGGTGTACCCTTTTCTTGGGAAAAAATTCCTGGAATTCCAAAACAAATATTTTCCAAGAAAAATAACACTACTACTTCTCTAGGTCAACTCCTCCCATTAATGCCACCACCTTGTGGAAATGG-AA--A---T---AATGGTTCATCCAAGAAAATTACTAGTTTTCTTGATGAGTTTTCTCCAAGAAAAAATGTTGCTAAAAGTTTTAGAAAAGATCCATTTTTTGCTGCATTTGTGGAGTGTTCTAAAGATGATCAACAACAATATGATGATGATATTTGGAAAAATTCTTCAAAGGTACCATCAATAAGAAGTTTAAGTGATAGATTTGGATTCATCAGCATGTATACATCTTGCAAAAGAACTTGTACAGTCTCTGAATCCATTGTTTATCTTCCAAGATCAAGAAATAATTATAGTAGGAAGTACTAGTGATCACAAGTCAATAAAATCCTAGATC</genome_strand>
        <mrna_strand>TATCCTCTTCCACTTTTCATTTTCTCCCTTCATCAAGAATCAATGGCTTCTACTCTTACTACTCCAACTCCAACTCCAACAAATGATGTTGATGATCATCAAAGTCATGACACCACATTCTCAACCCCACTTTTCCGGCCACCACCACCGACGACTCGCCGGAGTACTCCATCATCTCTCTCTTCATCTCCATCTCACTCTTCCAACTCTTCCTTTGGATCATCACTCTCTTTCCATGATATTCTTGATGATCATAATTCCCCTATTAGCCCTACAACTCCTCTTCAATTCCCAAAAGGTGTACCCTTTTCTTGGGAAAAAATTCCTGGAATTCCAAAACAAATATTTTCCAAGAAAAATAACACTACTACTACTCTAGGTCAACTTCTCCCATTAATGCCACCACCATGTGGAAATGGAAATTATGTTCCAAATAATTCATCCAAGAAAATTACTAGTTTTCTTGATGAGTTTTCTCCAAGAAAAAATGTTGCTAAAAGTTTTAGAAAAGATCCATTTTTTGCTGCATTTGTGGAGTGTTCTAAAGATGATCAACAACAATATGATGATGACATTTGGAAAAATTCTTCAAAGGTACCATCTATTAGAAGTTTAAGTGATAGATTTGGATTCATTAGCATGTATACTTCTTGCAAAAGAACTTGTACAGTCTCTGAATCCATTGTTTATCTTCCAAGATCAAGAAATAATTATAGTAGGAAGTACTAGTGATCACAAGTCAATAAAGTCCTAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372331" ref_strand="+" ref_description="SGN-E372331 [TUS-30-H15](-)">
      <seq>cacaaagaaaagccttttgatgaagacgatagcgatgatgatgatgccgatgacaaagaaaatgacccatcaaagagtcatcatcatggggatcattgctgttctaaacaggatcatggaggagaagctagtacgagtttttcggaagatcactgatgtatttgacttgtaagtttgttgaactttttgttaagaaggaaaaaaatgttatttttggggtaaatttgttaattggtattatttgagatcttctgttgttgggaatctgattgaaatttatgtttcgatgacatgaagttgaacaattgatattagtgttacttcttatactattctgcttgtaagaaaaaaatttcatttttgaagtgaatttgagtatttggtatcatggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74189" stop="75183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74489" g_stop="74870" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="392" polyA_stop="401"/>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E372331" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74489" e_stop="74870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAGAAAAGCCTTTTGATGAAGACGATAGCGATGATGATGATGCCGATGACAAAGAAAATGACCCATCAAAGAGTCATCATCATGGGGATCATTGCTGTTCTAAACAGGATCATGGAGGAGAAGCTAGTACGAGTTTTTCGGAAGATCACTGATGTATTTGACTTGTAAGTTTGTTGAACTTTTTGTTAAGAAGGAAAAAAATGTTATTTTTGGGGTAAATTTGTTAATTGGTATTATTTGAGATCTTCTGTTGTTGGGAATCTGATTGAAATTTATGTTTCGATGACATGAAGTTGAACAATTGATATTAGTGTTACTTCTTATACTATTCTGCTTGTAAGAAAAAAATTTCATTTTTGAAGTGAATTTGAGTATTTG</genome_strand>
        <mrna_strand>CACAAAGAAAAGCCTTTTGATGAAGACGATAGCGATGATGATGATGCCGATGACAAAGAAAATGACCCATCAAAGAGTCATCATCATGGGGATCATTGCTGTTCTAAACAGGATCATGGAGGAGAAGCTAGTACGAGTTTTTCGGAAGATCACTGATGTATTTGACTTGTAAGTTTGTTGAACTTTTTGTTAAGAAGGAAAAAAATGTTATTTTTGGGGTAAATTTGTTAATTGGTATTATTTGAGATCTTCTGTTGTTGGGAATCTGATTGAAATTTATGTTTCGATGACATGAAGTTGAACAATTGATATTAGTGTTACTTCTTATACTATTCTGCTTGTAAGAAAAAAATTTCATTTTTGAAGTGAATTTGAGTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285646" ref_strand="+" ref_description="SGN-E285646 [cLES-5-D9]">
      <seq>acaaagaaaagccttttgatgaagacgatagcgatgatgatgatgccgatgacaaagaaaatgacccatcaaagagtcatcatcatggggatcattgctgttctaaacaggatcatggaggagaagctagtacgagtttttcggaagatcactgatgtatttgacttgtaagtttgttgaactttttgttaagaaggaaaaaaatgttatttttggggtaaatttgttaattggtattatttgagatcttctgttgttgggaatctgattgaaatttatgtttcgatgacatgaagttgaacaattgatattagtgttacttcttatactattctgcttgtaagaaaaaaatttcatttttgaagtgaatttgagtatttggtatcattggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74190" stop="75183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74490" g_stop="74870" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="392" polyA_stop="402"/>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E285646" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74490" e_stop="74870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGAAAAGCCTTTTGATGAAGACGATAGCGATGATGATGATGCCGATGACAAAGAAAATGACCCATCAAAGAGTCATCATCATGGGGATCATTGCTGTTCTAAACAGGATCATGGAGGAGAAGCTAGTACGAGTTTTTCGGAAGATCACTGATGTATTTGACTTGTAAGTTTGTTGAACTTTTTGTTAAGAAGGAAAAAAATGTTATTTTTGGGGTAAATTTGTTAATTGGTATTATTTGAGATCTTCTGTTGTTGGGAATCTGATTGAAATTTATGTTTCGATGACATGAAGTTGAACAATTGATATTAGTGTTACTTCTTATACTATTCTGCTTGTAAGAAAAAAATTTCATTTTTGAAGTGAATTTGAGTATTTG</genome_strand>
        <mrna_strand>ACAAAGAAAAGCCTTTTGATGAAGACGATAGCGATGATGATGATGCCGATGACAAAGAAAATGACCCATCAAAGAGTCATCATCATGGGGATCATTGCTGTTCTAAACAGGATCATGGAGGAGAAGCTAGTACGAGTTTTTCGGAAGATCACTGATGTATTTGACTTGTAAGTTTGTTGAACTTTTTGTTAAGAAGGAAAAAAATGTTATTTTTGGGGTAAATTTGTTAATTGGTATTATTTGAGATCTTCTGTTGTTGGGAATCTGATTGAAATTTATGTTTCGATGACATGAAGTTGAACAATTGATATTAGTGTTACTTCTTATACTATTCTGCTTGTAAGAAAAAAATTTCATTTTTGAAGTGAATTTGAGTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372332" ref_strand="+" ref_description="SGN-E372332 [TUS-30-H15]">
      <seq>acaaagaaaagccttttgatgaagacgatagcgatgatgatgatgccgatgacaaagaaaatgacccatcaaagagtcatcatcatggggatcattgctgttctaaacaggatcatggaggagaagctagtacgagtttttcggaagatcactgatgtatttgacttgtaagtttgttgaactttttgttaagaaggaaaaaaatgttatttttggggtaaatttgttaattggtattatttgagatcttctgttgttgggaatctgattgaaatttatgtttcgatgacatgaagttgaacaattgatattagtgttacttcttatactattctgcttgtaagaaaaaaatttcatttttgaagtgaatttgagtatttggtatcattggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74190" stop="75183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74490" g_stop="74870" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="392" polyA_stop="402"/>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E372332" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74490" e_stop="74870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGAAAAGCCTTTTGATGAAGACGATAGCGATGATGATGATGCCGATGACAAAGAAAATGACCCATCAAAGAGTCATCATCATGGGGATCATTGCTGTTCTAAACAGGATCATGGAGGAGAAGCTAGTACGAGTTTTTCGGAAGATCACTGATGTATTTGACTTGTAAGTTTGTTGAACTTTTTGTTAAGAAGGAAAAAAATGTTATTTTTGGGGTAAATTTGTTAATTGGTATTATTTGAGATCTTCTGTTGTTGGGAATCTGATTGAAATTTATGTTTCGATGACATGAAGTTGAACAATTGATATTAGTGTTACTTCTTATACTATTCTGCTTGTAAGAAAAAAATTTCATTTTTGAAGTGAATTTGAGTATTTG</genome_strand>
        <mrna_strand>ACAAAGAAAAGCCTTTTGATGAAGACGATAGCGATGATGATGATGCCGATGACAAAGAAAATGACCCATCAAAGAGTCATCATCATGGGGATCATTGCTGTTCTAAACAGGATCATGGAGGAGAAGCTAGTACGAGTTTTTCGGAAGATCACTGATGTATTTGACTTGTAAGTTTGTTGAACTTTTTGTTAAGAAGGAAAAAAATGTTATTTTTGGGGTAAATTTGTTAATTGGTATTATTTGAGATCTTCTGTTGTTGGGAATCTGATTGAAATTTATGTTTCGATGACATGAAGTTGAACAATTGATATTAGTGTTACTTCTTATACTATTCTGCTTGTAAGAAAAAAATTTCATTTTTGAAGTGAATTTGAGTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542672" ref_strand="+" ref_description="SGN-E542672 [TUS-64-B13](-)">
      <seq>ataatgagttttagttcattataatgtcttgcacgaaaggactcttggagttctaaatttgcattgaggcagatgcagggaacaatccaggttacttctcatgttttttggtggaaggaaatatcacctgcatgattttttgagggtagaactaaaatttgaaggtgaaaaaaaaaacagaattatcctaaaatctttagaagaacacaaatttgaattttctgttacaatttctgagaggaaaaaaaaacatggttgtacatgttgaattcatctttctcattatgtcatccttttcaaggcaaaatctttgaagtcgagatcatttaatcctgtgtgaatttacgagttgtctccaagtgataaacattgttagcttttagtttctgttaggtgatagaatagtgtattgaagtatgataacacaacaactgttgttgaactcaataccatctaagttttcttattgtctttgtccactctattttatttcgtaggactgggcaggtataggtgcagatggaggaggagctagactttaatctatcccaaaacactttcttcgtgtgtttcaaaaggttataaaacaaaatatgataccattgattggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="-" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78225" stop="77015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77925" g_stop="77321" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="611" polyA_stop="620"/>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="-" ref_id="SGN-E542672" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77925" e_stop="77321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATGAGTTTTAGTTCATTATAATGTCTTGCACGAAAGGACTCTTGGAGTTCTAAATTTGCATTGAGGCAGATGCAGGGAACAATCCAGGTTACTTCTCATGTTTTTTGGTGGAAGGAAATATCACCTGCATGA-TTTTTGAGGGTAGAACTAAAATTTGAAGGTGAAAAAAAAAACAGAATTATCCTAAAATCTTTAGAAGAACACAAATTTGAATTTTCTGTTACAATTTCTGAGAGGAAAAAAAAACATGGTTGTACATGTTGAATTCATCTTTCTCATTATGTCATCCTTTTCAAGGCAAAATCTTTGAAGTCGAGATCATTTAATCCTGTGTGAATTTACGAGTTGTCTCCAAGTGATAAACATTGTTAGCTTTTAGTTTCTGTTAGGTGATAGAATAGTGTATTGAAGTATGATAACACAACAACTGTTGTTGAACTCAATACCATCTAAGTTTTCTTATTGTCTTTGTCCACTCTATTTTATTTCGTAGGACTGGGCAGGTATAGGTGCAGATGGAGGAGGAGCTAGACTTTAATCTATCCCAAAACACTTTCTTCGTGTGTTTCAAAAGGTTATAAAACAAAATATGATACCATTGA</genome_strand>
        <mrna_strand>ATAATGAGTTTTAGTTCATTATAATGTCTTGCACGAAAGGACTCTTGGAGTTCTAAATTTGCATTGAGGCAGATGCAGGGAACAATCCAGGTTACTTCTCATGTTTTTTGGTGGAAGGAAATATCACCTGCATGATTTTTTGAGGGTAGAACTAAAATTTGAAGGTGAAAAAAAAAACAGAATTATCCTAAAATCTTTAGAAGAACACAAATTTGAATTTTCTGTTACAATTTCTGAGAGGAAAAAAAAACATGGTTGTACATGTTGAATTCATCTTTCTCATTATGTCATCCTTTTCAAGGCAAAATCTTTGAAGTCGAGATCATTTAATCCTGTGTGAATTTACGAGTTGTCTCCAAGTGATAAACATTGTTAGCTTTTAGTTTCTGTTAGGTGATAGAATAGTGTATTGAAGTATGATAACACAACAACTGTTGTTGAACTCAATACCATCTAAGTTTTCTTATTGTCTTTGTCCACTCTATTTTATTTCGTAGGACTGGGCAGGTATAGGTGCAGATGGAGGAGGAGCTAGACTTTAATCTATCCCAAAACACTTTCTTCGTGTGTTTCAAAAGGTTATAAAACAAAATATGATACCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542673" ref_strand="+" ref_description="SGN-E542673 [TUS-64-B13]">
      <seq>cgcaaacctctagaacaatatctgcccctttccggacacaaaattaggcggaaattgtggcgggacgtcgcactagtctgttttcaaaactcgttttggtggaagaaaaccccttagttagtccaaaggttctatcctaaaagttttgatgataacaaacttatagcgttcaaatcttgtgattgtagtgataaccagaaactcacaagtaagtccacattcaaagccaagattggatcaaaagtatataatcaattttttgctgaattatagtcaaccacaggtggtatgttacagtcatggttgctatccatccggacttatattaatcattacatgaaaaccaactgatggacagacagaaagttgtttggaaggttatctgcaatatttgacaatcatcagtaagtcaaaggaattggttacataaggctgagtgtttccattggcaaatgcttaaaccccggtgcaatcagaacaagccaggatgaagtggtatggtgaccttagggggactgagagacatggaaactatggttacccacaggtaaacttgtatggccttgagggaaagtcttaaagatttgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="-" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79271" stop="78081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78971" g_stop="78381" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="-" ref_id="SGN-E542673" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78971" e_stop="78381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAAACCTCTAGAACAATATCTGCCCCTTTCCGGACACAAAATTAGGCGGAAATTGTGGCGGGACGTCGCACTAGTCTGTTTTCAAAACTCGTTTTGGTGGAAGAAAACCCCTTAGTTAGTCCAAAGGTTCTATCCTAAAAGTTTTGATGATAACAAACTTATAGCGTTCAAATCTTGTGATTGTAGTGATAACCAGAAACTCACAAGTAAGTCCACATTCAAAGCCAAGATTGGATCAAAAGTATATAATCAATTTTTTGCTGAATTATAGTCAACCACAGGTGGTATGTTACAGTCATGGTTGCTATCCATCCGGACTTATATTAATCATTACATGAAAACCAACTGATGGACAGACAGAAAGTTGTTTGGAAGGTTATCTGCAATATTTGACAATCATCAGTAAGTCAAAGGAATTGGTTACATAAGGCTGAGTGTTTCCATTGGCAAATGCTTAAACCCCGGTGCAGTCAGAACAAGCCAGGATGAAGTGGTATGGTGACCTTAGGGGGACTGAGAGACATGGAAACTAGGTTTACCCACAGGCAGACTTGTATGGCCTTGAGGAGAAGTCTTAAAGATTTGTTTG</genome_strand>
        <mrna_strand>CGCAAACCTCTAGAACAATATCTGCCCCTTTCCGGACACAAAATTAGGCGGAAATTGTGGCGGGACGTCGCACTAGTCTGTTTTCAAAACTCGTTTTGGTGGAAGAAAACCCCTTAGTTAGTCCAAAGGTTCTATCCTAAAAGTTTTGATGATAACAAACTTATAGCGTTCAAATCTTGTGATTGTAGTGATAACCAGAAACTCACAAGTAAGTCCACATTCAAAGCCAAGATTGGATCAAAAGTATATAATCAATTTTTTGCTGAATTATAGTCAACCACAGGTGGTATGTTACAGTCATGGTTGCTATCCATCCGGACTTATATTAATCATTACATGAAAACCAACTGATGGACAGACAGAAAGTTGTTTGGAAGGTTATCTGCAATATTTGACAATCATCAGTAAGTCAAAGGAATTGGTTACATAAGGCTGAGTGTTTCCATTGGCAAATGCTTAAACCCCGGTGCAATCAGAACAAGCCAGGATGAAGTGGTATGGTGACCTTAGGGGGACTGAGAGACATGGAAACTATGGTTACCCACAGGTAAACTTGTATGGCCTTGAGGGAAAGTCTTAAAGATTTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301564" ref_strand="+" ref_description="SGN-E301564 [cLEW-23-H7]">
      <seq>ggaattcggcacgaggcgcaaacctctagaacaatatctgcccctttccggacacaaaattaggcggaaattgtggcgggacgtcgcactagtctgttttcaaaactcgttttggtggaagaaaaccccttagttagtccaaaggttctatcctaaaagttttgatgataacaaacttatagcgttcaaatcttgtgattgtagtgataaccagaaactcacaagtaagtccacattcaaagccaagattggatcaaaagtatataatcaattttttgctgaattatagtcaaccacaggtggtatgttacagtcatggttgctatccatccggacttatattaatcattacatgaaaaccaactgatggacagacagaaagttgtttggaaggttatctgcaatatttgacaatcatcagtaagtcaaaggaattggttacataaggctgagtgtttccattggcaaatgcttaaaccccggtgcagtcagaacaagccaggatgaagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="-" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79271" stop="78176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78971" g_stop="78476" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="512" r_length="496" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="-" ref_id="SGN-E301564" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78971" e_stop="78476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAAACCTCTAGAACAATATCTGCCCCTTTCCGGACACAAAATTAGGCGGAAATTGTGGCGGGACGTCGCACTAGTCTGTTTTCAAAACTCGTTTTGGTGGAAGAAAACCCCTTAGTTAGTCCAAAGGTTCTATCCTAAAAGTTTTGATGATAACAAACTTATAGCGTTCAAATCTTGTGATTGTAGTGATAACCAGAAACTCACAAGTAAGTCCACATTCAAAGCCAAGATTGGATCAAAAGTATATAATCAATTTTTTGCTGAATTATAGTCAACCACAGGTGGTATGTTACAGTCATGGTTGCTATCCATCCGGACTTATATTAATCATTACATGAAAACCAACTGATGGACAGACAGAAAGTTGTTTGGAAGGTTATCTGCAATATTTGACAATCATCAGTAAGTCAAAGGAATTGGTTACATAAGGCTGAGTGTTTCCATTGGCAAATGCTTAAACCCCGGTGCAGTCAGAACAAGCCAGGATGAAGTGG</genome_strand>
        <mrna_strand>CGCAAACCTCTAGAACAATATCTGCCCCTTTCCGGACACAAAATTAGGCGGAAATTGTGGCGGGACGTCGCACTAGTCTGTTTTCAAAACTCGTTTTGGTGGAAGAAAACCCCTTAGTTAGTCCAAAGGTTCTATCCTAAAAGTTTTGATGATAACAAACTTATAGCGTTCAAATCTTGTGATTGTAGTGATAACCAGAAACTCACAAGTAAGTCCACATTCAAAGCCAAGATTGGATCAAAAGTATATAATCAATTTTTTGCTGAATTATAGTCAACCACAGGTGGTATGTTACAGTCATGGTTGCTATCCATCCGGACTTATATTAATCATTACATGAAAACCAACTGATGGACAGACAGAAAGTTGTTTGGAAGGTTATCTGCAATATTTGACAATCATCAGTAAGTCAAAGGAATTGGTTACATAAGGCTGAGTGTTTCCATTGGCAAATGCTTAAACCCCGGTGCAGTCAGAACAAGCCAGGATGAAGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442841" ref_strand="+" ref_description="SGN-E442841 [cSTA-35-M13]">
      <seq>ctcggatgagatatatctcaagccaggttgagaacaagatccgcatcgttgctttgtcaacttccttagctaatgccaaggatttgggagaatggattggggctacatctcatgggctcttcaactttccgcctggtgtaaggcctgtgccacttgaaatacacattcaaggtgttgatattgctaactttgaagctaggatgcaagccatgacaaaacccacatatactgcaatagtccaacatgcaaggaagggaaaacctgcacttgtgtacgttcccacaaggaagcatgctcgcttgactgctgtagatctgatgacttattcaagcatggacagcgaagacacacccatatttctgctacgatctgcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="-" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82622" stop="81646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82322" g_stop="81946" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="-" ref_id="SGN-E442841" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82322" e_stop="81946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGGATGAGATATATCTCAAGCCAGGTTGAGAACAAGATCCGCATCGTCGCTTTTTCAGCTTCCCTATCTAATGCCAAGGATTTGGGAGAATGGATTGGGGCTACATCTCACGGGCTCTTCAACTTCCCTCCTCCTGTCAGGCCTGTGCCACTGGAAATACACATTCAGGGTGTTGATATTGCAAACTTTGAAGCTAGGATGCATGTCATGACAAAACCCACATATACTGCAGTAGTCCAACATGCAAGGAAAGGAAAACCCGGCAATTGTGTATGTTCCCACAAGGAAGCATACTCACTTGACTGCTCTAGACCTGATGACACATTCAAGCATGGACAGCGAAGACACGCCTATATTTCTTCTACGATCTTCAGA</genome_strand>
        <mrna_strand>CTCGGATGAGATATATCTCAAGCCAGGTTGAGAACAAGATCCGCATCGTTGCTTTGTCAACTTCCTTAGCTAATGCCAAGGATTTGGGAGAATGGATTGGGGCTACATCTCATGGGCTCTTCAACTTTCCGCCTGGTGTAAGGCCTGTGCCACTTGAAATACACATTCAAGGTGTTGATATTGCTAACTTTGAAGCTAGGATGCAAGCCATGACAAAACCCACATATACTGCAATAGTCCAACATGCAAGGAAGGGAAAA-CCTGCACTTGTGTACGTTCCCACAAGGAAGCATGCTCGCTTGACTGCTGTAGATCTGATGACTTATTCAAGCATGGACAGCGAAGACACACCCATATTTCTGCTACGATCTGCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328281" ref_strand="+" ref_description="SGN-E328281 [cTOC-21-F14]">
      <seq>ttttggtttcacggccgttcatcacggcggcggagtcggaacagcagaagcaacagttgggcatagacagcggtaaagtattggaacttgatgaatctaactttgatgctgcaatttccagttttgattatattttggtcgatttctacgctccttggtgtggtcactgcaaacgacttgcacctcagttggacaaagctgctagcatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88710" stop="90773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89010" g_stop="89197" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89198" i_stop="90450" i_length="1253">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90451" g_stop="90473" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="211" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E328281" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>211</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89010" e_stop="89197"/>
          <exon e_start="90451" e_stop="90473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGTTTCACGGCCGTTCATCACGGCGGCGGAGTCGGAACAGCAGAAGCAACAGTTGGGCATAGACAGCGGTAAAGTATTGGAACTTGATGAATCTAACTTTGATGCTGCAATTTCCAGTTTTGATTATATTTTGGTCGATTTCTACGCTCCTTGGTGTGGTCACTGCAAACGACTTGCACCTCAGGTCTATTTCCTTTACTCAGTGTTGTTTATTTCTTTTGAAAGTATATAGTAGTGACCTCTACTTTTAAGAGATCTTACTCGAATGTTGTAGAAGCAGTTAACTTTCTAAGTTACGATTGTAAATGTATAACTGCAATAGATAAGATTGGGTTTCTTTACTTCAACTGTGAGTAAATCAGGTATGCGAGATAATTGATCAAATTACTAAGCAGAAAAGCCAGTGAGTTGAATGAATTAAGATCTGAAAACTAGAATAAGCATATACCTAGTTTTATGATACGTTTGCTGGGATATGTAATCTAAATTAGTATTAAAAATAAACTTTATTTAACAATGGTGGTGTCTGGCCAGCTTGTATGTATCCACTATTCATATCCACCAGCACAACTACTGAGTGACTTAGGCCACCAAGCTTAGGCGAAGGTAGAAATCTGATCTTTTTTTTTTTTTGGTCTTTGTCTTTGTTGGGTTTTGAACTCTGATCTATGAGATTTGCACCCAGTTCATGGACCACTAGGCCATATACTTAGGTGCGAAATTAGACTAAAAAGCATAGACGGACTAATTTTGCACTGTTGATGACGTAGATTCAGAACCATAAGGTTTCATGTTATAATCCCATCAGAAGTAAAGAAACACAAGGTGATTTATTGCCATGCGTCCTAACCTTTGGCGGACAAAGAAAAAAACTACCAAAAAAGTTGTGTTTCTACCTTAATCGATAAAGGACTCTTCAATTAACTTCAAAAAGGTTGATTGCTTCTCCAATGAAAAGTTATCTAGACTCTATATTGATTATGTCATTTGGCCAATTCCTAGATTCGGATATCCATACATTTTGTGAAAGTAATTTTTACTATAAATGCTTCCTAAGTATGTTTTGTGCAACCATTGTTATCAGATCTTTCTTTAGGGGGGTAGTTGGTTGGCCGCATCATCAAAATAATCTCCTTATAAAGTCCACATACCCACATGACCAACACAGTGTCTGATTGAACTCATAAGAACAAATAATCTCCGATTAAGTAATGAACTGTTTGATTGATATGGTATTAAGCTTAAGATCACATATTTTTTGCGAGAATCTATGTTTATCTTATCTATCTCTGTTAGATGACTCCCCCACCCCACCCCCCACCCAACCCGCGCGGCGACCACCACGCTCAGATTCATTTAATATGCACATTTCTCTGCGCAAGAATTGAATTCTATGTGATGCGTGGTATCAATCTGATGAATTTAAGTTCGTTGCAGTTGGACAAAGCTGCTAGCATACT</genome_strand>
        <mrna_strand>TTTTGGTTTCACGGCCGTTCATCACGGCGGCGGAGTCGGAACAGCAGAAGCAACAGTTGGGCATAGACAGCGGTAAAGTATTGGAACTTGATGAATCTAACTTTGATGCTGCAATTTCCAGTTTTGATTATATTTTGGTCGATTTCTACGCTCCTTGGTGTGGTCACTGCAAACGACTTGCACCTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACAAAGCTGCTAGCATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727412" ref_strand="+" ref_description="SGN-E727412 [LA14CE04]">
      <seq>tttcacggccgttcatcacggcggcggagtcggaacagcagaagcaacagttgggcatagacagcggtaaagtattggaacttgatgaatctaactttgatgctgcaatttccagttttgattatattttggtcgatttctacgctccttggtgtggtcactgcaaacgacttgcacctcagttggacaaagctgctagcatacttgctgatttgaagaagcccataagtattgcaaaaatagatgctgacaagtacaaacgtgttggttcaaaatatggcattgatggatatccaactttaaagatatttatgcatggtgttccaacagaatattatggaccaagaaaagcagatttacttgtacgattcttgaagaagtttgttgctgctgatgtggccatactcaattctgattcagccattagtgaatttgttgaagcagccggcactagtttccctatatttataggctttggtttgaatgaatctgccatatcacattttgcagtaaaatacaagaagagagcatggttttctgtggcaaaagatttctcggataagaccatggaattctatgattttgacaaggtacctgctttggtagctcgtcatccaaactatgatgaacaaagcatcttctatggcccctttgaagaaaattttgttgaggattatatcaagcagagtttgctcccactgactttgcccattactgaagaaactctgagattgctgaaagatgatgagagaaaagttattctaacaattttggaagatgaaactgatgataggtctaagaaattattgaagctcctgaaagctgctgcatctgcaaaccgcgactttcgtgttgtttttgttgggttcaagcaatggcaaggggttgctgaatcatttgacgtttctaagaaaactaagctgccaaaaatggttgtttgggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88716" stop="93141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89016" g_stop="89197" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89198" i_stop="90450" i_length="1253">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90451" g_stop="90554" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="286" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90555" i_stop="91552" i_length="998">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91553" g_stop="91923" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="657" r_length="371" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91924" i_stop="92553" i_length="630">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.490" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92554" g_stop="92841" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="945" r_length="288" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E727412" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>945</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89016" e_stop="89197"/>
          <exon e_start="90451" e_stop="90554"/>
          <exon e_start="91553" e_stop="91923"/>
          <exon e_start="92554" e_stop="92841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACGGCCGTTCATCACGGCGGCGGAGTCGGAACAGCAGAAGCAACAGTTGGGCATAGACAGCGGTAAAGTATTGGAACTTGATGAATCTAACTTTGATGCTGCAATTTCCAGTTTTGATTATATTTTGGTCGATTTCTACGCTCCTTGGTGTGGTCACTGCAAACGACTTGCACCTCAGGTCTATTTCCTTTACTCAGTGTTGTTTATTTCTTTTGAAAGTATATAGTAGTGACCTCTACTTTTAAGAGATCTTACTCGAATGTTGTAGAAGCAGTTAACTTTCTAAGTTACGATTGTAAATGTATAACTGCAATAGATAAGATTGGGTTTCTTTACTTCAACTGTGAGTAAATCAGGTATGCGAGATAATTGATCAAATTACTAAGCAGAAAAGCCAGTGAGTTGAATGAATTAAGATCTGAAAACTAGAATAAGCATATACCTAGTTTTATGATACGTTTGCTGGGATATGTAATCTAAATTAGTATTAAAAATAAACTTTATTTAACAATGGTGGTGTCTGGCCAGCTTGTATGTATCCACTATTCATATCCACCAGCACAACTACTGAGTGACTTAGGCCACCAAGCTTAGGCGAAGGTAGAAATCTGATCTTTTTTTTTTTTTGGTCTTTGTCTTTGTTGGGTTTTGAACTCTGATCTATGAGATTTGCACCCAGTTCATGGACCACTAGGCCATATACTTAGGTGCGAAATTAGACTAAAAAGCATAGACGGACTAATTTTGCACTGTTGATGACGTAGATTCAGAACCATAAGGTTTCATGTTATAATCCCATCAGAAGTAAAGAAACACAAGGTGATTTATTGCCATGCGTCCTAACCTTTGGCGGACAAAGAAAAAAACTACCAAAAAAGTTGTGTTTCTACCTTAATCGATAAAGGACTCTTCAATTAACTTCAAAAAGGTTGATTGCTTCTCCAATGAAAAGTTATCTAGACTCTATATTGATTATGTCATTTGGCCAATTCCTAGATTCGGATATCCATACATTTTGTGAAAGTAATTTTTACTATAAATGCTTCCTAAGTATGTTTTGTGCAACCATTGTTATCAGATCTTTCTTTAGGGGGGTAGTTGGTTGGCCGCATCATCAAAATAATCTCCTTATAAAGTCCACATACCCACATGACCAACACAGTGTCTGATTGAACTCATAAGAACAAATAATCTCCGATTAAGTAATGAACTGTTTGATTGATATGGTATTAAGCTTAAGATCACATATTTTTTGCGAGAATCTATGTTTATCTTATCTATCTCTGTTAGATGACTCCCCCACCCCACCCCCCACCCAACCCGCGCGGCGACCACCACGCTCAGATTCATTTAATATGCACATTTCTCTGCGCAAGAATTGAATTCTATGTGATGCGTGGTATCAATCTGATGAATTTAAGTTCGTTGCAGTTGGACAAAGCTGCTAGCATACTTGCTGATTTGAAGAAGCCCATAAGTATTGCAAAAATAGATGCTGACAAGTACAAACGTGTTGGTTCAAAATATGGCATTGAGTATGTGTACTTTTAGCCTTATCACTACATCGTTTTTCTGATATTAGTTTTACAATGTATGATCTGCTTCCGTTTAATAAGGTTTTCAAGAACTCAAAAGAAAGGAGGTATTCATTTGTTTTTCTGATAGTGATCACAACTGTTTGCTTTAAAATTGGATTTCATTTTTACTCTCTTAGGTTGACCATATAGGCAATTTGATTCGTATTCACCTGTGTAAAAGAAGATGATGTGTTTAAGTAAAGGAGTTACAAGTTACAACAGAAGTTTGAAAAGCAAAAAATGTAGATGCTGATAGGTCGTTGAGGGCCCAGCCACATCTATCTTTCTTTGTCCGTACGTCTGCCACGTCCTCTTTTTCCTTTCCTTTACCTTAAACCTCCATTAATTCTACCACTGATAATAATCTGATCTCCTTTGTTCCTGTCCTCTCTCAATCTTGGATCTCTCCTTCATCAATATTGTTCCTTCCCTCTCTTTGTCTAGGATGTACTTATATGGTGCTGATACGTCTGCATATGTGCTGGAGTAGGAAGTAGTATCTTTAGCTAAGTCTGTTGGAGAGGCAGAGTAGCCAGGTGACATACACGGAGAGAGTGTAATCAGGATAGTTGGAATTGATGGACAAAAGAGATGACTAGCTGGACGGGGATTGAGCTTTTTAAGTGGGAAGACTTGAATTTGGGTTCTGATCTACTTTCTGTACCGTCTCTATTTCTAATGAAGCTGGATTACCCCAAGAGTTCACCTGTCGTGTAATTCAATATGTTACTTTTTTTCTGCAAGAGAGCACTGAAAAGCGTCGAAGTGAAGATTTATTAGATGTTATTTGCTCTCCCTTAAACAAATAAAACAAATATAATGCTGAGCTGCAGGAACACATGCTTTATGGAAATTTGATTATTTCTCCCCTCGACTCTTGTTAATGAAATTAAAAGACACTGATCATTTTTATTTTATTAGAAGATATTGAATTTCTCTTTCTGATCTCAATGCAGTGGATATCCAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAATCTGCCATATCACATTTTGCAGTAAAATACAAGAAGAGAGCATGGTTTTCTGTGGCAAAAGATTTCTCGGATAAGACCATGGAATTCTATGATTTTGACAAGGTACCTGCTTTGGTAGCTCGTCATCCAAACTATGATGAACAAAGCATCTTCTATGGCCCCTTTGAAGGTTAGCTTATCATCGCCTGTTATCTTAGGCTTTGGAAGTAATTAAAATCTCACTCACTTTATCAAAAAATTACTCATCTCTTCCTAGAAACTAATAAGAATTAATTATTTTTTTATCGCCTACAAAGGTCCTGAGAAAACCAGAATCTTGTTATATTTAAAGAAGTAACAGTACCACCTGCTCTGTATTTCAAAACTTGCTTTAATTCAATGATTGGCCCTTTATTTGTATTGTGTCACTTAAAAGCAGAAGTCAGCAACTCCAGATTCTGATGTGCTTAAATAATAGGGATCAATCATGAGCTAGTTGTAGTGCTTTCAAAAAGGAAGCATTCAAAAACATCAGTTGACTCTTATGATGAATTCTGATATGGTTTTGATTAGGTGGTTAAGTAATTGATTTGATTGCATGACTATAACCTTATATTATACTTTTCAGTTGATTAAATTGTTTTAGGCTTATTTATGAAAAAAGTTAAATAGCTTTAACTTCCAACCTGCCAACATTTGCTGTATTTTCTGTACTGCATGAAAAAACAAACTGATTTAAGAATTGAGCTGAAGTTGTGTTTTGGGGATTTCTGCGAAATAATGGTGAATATCTGAACCTTCTTCCTGCTATGGATCACAGAAAATTTTGTTGAGGATTATATCAAGCAGAGTTTGCTCCCACTGACTTTGCCCATTACTGAAGAAACTCTGAGATTGCTGAAAGATGATGAGAGAAAAGTTATTCTAACAATTTTGGAAGATGAAACTGATGATAGGTCTAAGAAATTATTGAAGCTCCTGAAAGCTGCTGCATCTGCAAACCGCGAC-TTCGTGTTTGTTTTTGTTGGGTTCAAGCAATGGCAAGGGTTTGCTGAATCATTTGACGTTTCTAAGAAAACTAAGCTGCCAAAAATGGTTGTTTGGGATG</genome_strand>
        <mrna_strand>TTTCACGGCCGTTCATCACGGCGGCGGAGTCGGAACAGCAGAAGCAACAGTTGGGCATAGACAGCGGTAAAGTATTGGAACTTGATGAATCTAACTTTGATGCTGCAATTTCCAGTTTTGATTATATTTTGGTCGATTTCTACGCTCCTTGGTGTGGTCACTGCAAACGACTTGCACCTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACAAAGCTGCTAGCATACTTGCTGATTTGAAGAAGCCCATAAGTATTGCAAAAATAGATGCTGACAAGTACAAACGTGTTGGTTCAAAATATGGCATTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATATCCAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAATCTGCCATATCACATTTTGCAGTAAAATACAAGAAGAGAGCATGGTTTTCTGTGGCAAAAGATTTCTCGGATAAGACCATGGAATTCTATGATTTTGACAAGGTACCTGCTTTGGTAGCTCGTCATCCAAACTATGATGAACAAAGCATCTTCTATGGCCCCTTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTTTGTTGAGGATTATATCAAGCAGAGTTTGCTCCCACTGACTTTGCCCATTACTGAAGAAACTCTGAGATTGCTGAAAGATGATGAGAGAAAAGTTATTCTAACAATTTTGGAAGATGAAACTGATGATAGGTCTAAGAAATTATTGAAGCTCCTGAAAGCTGCTGCATCTGCAAACCGCGACTTTCGTG-TTGTTTTTGTTGGGTTCAAGCAATGGCAAGGGGTTGCTGAATCATTTGACGTTTCTAAGAAAACTAAGCTGCCAAAAATGGTTGTTTGGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338694" ref_strand="+" ref_description="SGN-E338694 [cTOE-15-P14]">
      <seq>tttcacggccgttcatcacggcggcggagtcggaacagcagaagcaacagttgggcatagacagcggtaaagtattggaacttgatgaatctaactttgatgctgcaatttccagttttgattatattttggtcgatttctacgctccttggtgtggtcactgcaaacgacttgcacctcagttggacaaagctgctagcatacttgctgatttgaagaagcccataagtattgcaaaaatagatgctgacaagtacaaacgtgttggttcaaaatatggcattgatggatatccaactttaaagatatttatgcatggtgttccaacagaatattatggaccaagaaaagcagatttacttgtacgattcttgaagaagtttgttgctgctgatgtggccatactcaattctgattcagccattagtgaatttgttgaagcagccggcactagtttccctatatttataggctttggtttgaatgaatctgccatatcacattttgcagtaaaatacaagaagagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88716" stop="92094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89016" g_stop="89197" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89198" i_stop="90450" i_length="1253">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90451" g_stop="90554" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="286" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90555" i_stop="91552" i_length="998">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91553" g_stop="91794" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="528" r_length="242" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E338694" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89016" e_stop="89197"/>
          <exon e_start="90451" e_stop="90554"/>
          <exon e_start="91553" e_stop="91794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACGGCCGTTCATCACGGCGGCGGAGTCGGAACAGCAGAAGCAACAGTTGGGCATAGACAGCGGTAAAGTATTGGAACTTGATGAATCTAACTTTGATGCTGCAATTTCCAGTTTTGATTATATTTTGGTCGATTTCTACGCTCCTTGGTGTGGTCACTGCAAACGACTTGCACCTCAGGTCTATTTCCTTTACTCAGTGTTGTTTATTTCTTTTGAAAGTATATAGTAGTGACCTCTACTTTTAAGAGATCTTACTCGAATGTTGTAGAAGCAGTTAACTTTCTAAGTTACGATTGTAAATGTATAACTGCAATAGATAAGATTGGGTTTCTTTACTTCAACTGTGAGTAAATCAGGTATGCGAGATAATTGATCAAATTACTAAGCAGAAAAGCCAGTGAGTTGAATGAATTAAGATCTGAAAACTAGAATAAGCATATACCTAGTTTTATGATACGTTTGCTGGGATATGTAATCTAAATTAGTATTAAAAATAAACTTTATTTAACAATGGTGGTGTCTGGCCAGCTTGTATGTATCCACTATTCATATCCACCAGCACAACTACTGAGTGACTTAGGCCACCAAGCTTAGGCGAAGGTAGAAATCTGATCTTTTTTTTTTTTTGGTCTTTGTCTTTGTTGGGTTTTGAACTCTGATCTATGAGATTTGCACCCAGTTCATGGACCACTAGGCCATATACTTAGGTGCGAAATTAGACTAAAAAGCATAGACGGACTAATTTTGCACTGTTGATGACGTAGATTCAGAACCATAAGGTTTCATGTTATAATCCCATCAGAAGTAAAGAAACACAAGGTGATTTATTGCCATGCGTCCTAACCTTTGGCGGACAAAGAAAAAAACTACCAAAAAAGTTGTGTTTCTACCTTAATCGATAAAGGACTCTTCAATTAACTTCAAAAAGGTTGATTGCTTCTCCAATGAAAAGTTATCTAGACTCTATATTGATTATGTCATTTGGCCAATTCCTAGATTCGGATATCCATACATTTTGTGAAAGTAATTTTTACTATAAATGCTTCCTAAGTATGTTTTGTGCAACCATTGTTATCAGATCTTTCTTTAGGGGGGTAGTTGGTTGGCCGCATCATCAAAATAATCTCCTTATAAAGTCCACATACCCACATGACCAACACAGTGTCTGATTGAACTCATAAGAACAAATAATCTCCGATTAAGTAATGAACTGTTTGATTGATATGGTATTAAGCTTAAGATCACATATTTTTTGCGAGAATCTATGTTTATCTTATCTATCTCTGTTAGATGACTCCCCCACCCCACCCCCCACCCAACCCGCGCGGCGACCACCACGCTCAGATTCATTTAATATGCACATTTCTCTGCGCAAGAATTGAATTCTATGTGATGCGTGGTATCAATCTGATGAATTTAAGTTCGTTGCAGTTGGACAAAGCTGCTAGCATACTTGCTGATTTGAAGAAGCCCATAAGTATTGCAAAAATAGATGCTGACAAGTACAAACGTGTTGGTTCAAAATATGGCATTGAGTATGTGTACTTTTAGCCTTATCACTACATCGTTTTTCTGATATTAGTTTTACAATGTATGATCTGCTTCCGTTTAATAAGGTTTTCAAGAACTCAAAAGAAAGGAGGTATTCATTTGTTTTTCTGATAGTGATCACAACTGTTTGCTTTAAAATTGGATTTCATTTTTACTCTCTTAGGTTGACCATATAGGCAATTTGATTCGTATTCACCTGTGTAAAAGAAGATGATGTGTTTAAGTAAAGGAGTTACAAGTTACAACAGAAGTTTGAAAAGCAAAAAATGTAGATGCTGATAGGTCGTTGAGGGCCCAGCCACATCTATCTTTCTTTGTCCGTACGTCTGCCACGTCCTCTTTTTCCTTTCCTTTACCTTAAACCTCCATTAATTCTACCACTGATAATAATCTGATCTCCTTTGTTCCTGTCCTCTCTCAATCTTGGATCTCTCCTTCATCAATATTGTTCCTTCCCTCTCTTTGTCTAGGATGTACTTATATGGTGCTGATACGTCTGCATATGTGCTGGAGTAGGAAGTAGTATCTTTAGCTAAGTCTGTTGGAGAGGCAGAGTAGCCAGGTGACATACACGGAGAGAGTGTAATCAGGATAGTTGGAATTGATGGACAAAAGAGATGACTAGCTGGACGGGGATTGAGCTTTTTAAGTGGGAAGACTTGAATTTGGGTTCTGATCTACTTTCTGTACCGTCTCTATTTCTAATGAAGCTGGATTACCCCAAGAGTTCACCTGTCGTGTAATTCAATATGTTACTTTTTTTCTGCAAGAGAGCACTGAAAAGCGTCGAAGTGAAGATTTATTAGATGTTATTTGCTCTCCCTTAAACAAATAAAACAAATATAATGCTGAGCTGCAGGAACACATGCTTTATGGAAATTTGATTATTTCTCCCCTCGACTCTTGTTAATGAAATTAAAAGACACTGATCATTTTTATTTTATTAGAAGATATTGAATTTCTCTTTCTGATCTCAATGCAGTGGATATCCAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAATCTGCCATATCACATTTTGCAGTAAAATACAAGAAGAGAG</genome_strand>
        <mrna_strand>TTTCACGGCCGTTCATCACGGCGGCGGAGTCGGAACAGCAGAAGCAACAGTTGGGCATAGACAGCGGTAAAGTATTGGAACTTGATGAATCTAACTTTGATGCTGCAATTTCCAGTTTTGATTATATTTTGGTCGATTTCTACGCTCCTTGGTGTGGTCACTGCAAACGACTTGCACCTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACAAAGCTGCTAGCATACTTGCTGATTTGAAGAAGCCCATAAGTATTGCAAAAATAGATGCTGACAAGTACAAACGTGTTGGTTCAAAATATGGCATTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATATCCAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAATCTGCCATATCACATTTTGCAGTAAAATACAAGAAGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306048" ref_strand="+" ref_description="SGN-E306048 [cLEY-13-E21]">
      <seq>tttcacggtcgttcatcacggcggcggagtcggaacagcagaagcaacagttgggcatagacagcggtaaagtattggaacttgatgaatctaactttgatgctgcaatttccagttttgattatattttggtcgatttctacgctccttggtgtggtcactgcaaacgacttgcacctcagttggacaaagctgctagcatacttgctgatttgaagaagcccataagtattgcaaaaatagatgctgacaagtacaaacgtgttggttcaaaatatggcattgatggatatccaactttaaagatatttatgcatggtgttccaacagaatattatggaccaagaaaagcagatttacttgtacgattcttgaagaagtttgttgctgctgatgtggccatactcaattctgattcagccattagtgaatttgttgaagcagccggcactagtttccctatatttataggctttggtttgaatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88716" stop="92055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89016" g_stop="89197" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89198" i_stop="90450" i_length="1253">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90451" g_stop="90554" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="286" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90555" i_stop="91552" i_length="998">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91553" g_stop="91755" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="489" r_length="203" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E306048" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89016" e_stop="89197"/>
          <exon e_start="90451" e_stop="90554"/>
          <exon e_start="91553" e_stop="91755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACGGCCGTTCATCACGGCGGCGGAGTCGGAACAGCAGAAGCAACAGTTGGGCATAGACAGCGGTAAAGTATTGGAACTTGATGAATCTAACTTTGATGCTGCAATTTCCAGTTTTGATTATATTTTGGTCGATTTCTACGCTCCTTGGTGTGGTCACTGCAAACGACTTGCACCTCAGGTCTATTTCCTTTACTCAGTGTTGTTTATTTCTTTTGAAAGTATATAGTAGTGACCTCTACTTTTAAGAGATCTTACTCGAATGTTGTAGAAGCAGTTAACTTTCTAAGTTACGATTGTAAATGTATAACTGCAATAGATAAGATTGGGTTTCTTTACTTCAACTGTGAGTAAATCAGGTATGCGAGATAATTGATCAAATTACTAAGCAGAAAAGCCAGTGAGTTGAATGAATTAAGATCTGAAAACTAGAATAAGCATATACCTAGTTTTATGATACGTTTGCTGGGATATGTAATCTAAATTAGTATTAAAAATAAACTTTATTTAACAATGGTGGTGTCTGGCCAGCTTGTATGTATCCACTATTCATATCCACCAGCACAACTACTGAGTGACTTAGGCCACCAAGCTTAGGCGAAGGTAGAAATCTGATCTTTTTTTTTTTTTGGTCTTTGTCTTTGTTGGGTTTTGAACTCTGATCTATGAGATTTGCACCCAGTTCATGGACCACTAGGCCATATACTTAGGTGCGAAATTAGACTAAAAAGCATAGACGGACTAATTTTGCACTGTTGATGACGTAGATTCAGAACCATAAGGTTTCATGTTATAATCCCATCAGAAGTAAAGAAACACAAGGTGATTTATTGCCATGCGTCCTAACCTTTGGCGGACAAAGAAAAAAACTACCAAAAAAGTTGTGTTTCTACCTTAATCGATAAAGGACTCTTCAATTAACTTCAAAAAGGTTGATTGCTTCTCCAATGAAAAGTTATCTAGACTCTATATTGATTATGTCATTTGGCCAATTCCTAGATTCGGATATCCATACATTTTGTGAAAGTAATTTTTACTATAAATGCTTCCTAAGTATGTTTTGTGCAACCATTGTTATCAGATCTTTCTTTAGGGGGGTAGTTGGTTGGCCGCATCATCAAAATAATCTCCTTATAAAGTCCACATACCCACATGACCAACACAGTGTCTGATTGAACTCATAAGAACAAATAATCTCCGATTAAGTAATGAACTGTTTGATTGATATGGTATTAAGCTTAAGATCACATATTTTTTGCGAGAATCTATGTTTATCTTATCTATCTCTGTTAGATGACTCCCCCACCCCACCCCCCACCCAACCCGCGCGGCGACCACCACGCTCAGATTCATTTAATATGCACATTTCTCTGCGCAAGAATTGAATTCTATGTGATGCGTGGTATCAATCTGATGAATTTAAGTTCGTTGCAGTTGGACAAAGCTGCTAGCATACTTGCTGATTTGAAGAAGCCCATAAGTATTGCAAAAATAGATGCTGACAAGTACAAACGTGTTGGTTCAAAATATGGCATTGAGTATGTGTACTTTTAGCCTTATCACTACATCGTTTTTCTGATATTAGTTTTACAATGTATGATCTGCTTCCGTTTAATAAGGTTTTCAAGAACTCAAAAGAAAGGAGGTATTCATTTGTTTTTCTGATAGTGATCACAACTGTTTGCTTTAAAATTGGATTTCATTTTTACTCTCTTAGGTTGACCATATAGGCAATTTGATTCGTATTCACCTGTGTAAAAGAAGATGATGTGTTTAAGTAAAGGAGTTACAAGTTACAACAGAAGTTTGAAAAGCAAAAAATGTAGATGCTGATAGGTCGTTGAGGGCCCAGCCACATCTATCTTTCTTTGTCCGTACGTCTGCCACGTCCTCTTTTTCCTTTCCTTTACCTTAAACCTCCATTAATTCTACCACTGATAATAATCTGATCTCCTTTGTTCCTGTCCTCTCTCAATCTTGGATCTCTCCTTCATCAATATTGTTCCTTCCCTCTCTTTGTCTAGGATGTACTTATATGGTGCTGATACGTCTGCATATGTGCTGGAGTAGGAAGTAGTATCTTTAGCTAAGTCTGTTGGAGAGGCAGAGTAGCCAGGTGACATACACGGAGAGAGTGTAATCAGGATAGTTGGAATTGATGGACAAAAGAGATGACTAGCTGGACGGGGATTGAGCTTTTTAAGTGGGAAGACTTGAATTTGGGTTCTGATCTACTTTCTGTACCGTCTCTATTTCTAATGAAGCTGGATTACCCCAAGAGTTCACCTGTCGTGTAATTCAATATGTTACTTTTTTTCTGCAAGAGAGCACTGAAAAGCGTCGAAGTGAAGATTTATTAGATGTTATTTGCTCTCCCTTAAACAAATAAAACAAATATAATGCTGAGCTGCAGGAACACATGCTTTATGGAAATTTGATTATTTCTCCCCTCGACTCTTGTTAATGAAATTAAAAGACACTGATCATTTTTATTTTATTAGAAGATATTGAATTTCTCTTTCTGATCTCAATGCAGTGGATATCCAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAAT</genome_strand>
        <mrna_strand>TTTCACGGTCGTTCATCACGGCGGCGGAGTCGGAACAGCAGAAGCAACAGTTGGGCATAGACAGCGGTAAAGTATTGGAACTTGATGAATCTAACTTTGATGCTGCAATTTCCAGTTTTGATTATATTTTGGTCGATTTCTACGCTCCTTGGTGTGGTCACTGCAAACGACTTGCACCTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACAAAGCTGCTAGCATACTTGCTGATTTGAAGAAGCCCATAAGTATTGCAAAAATAGATGCTGACAAGTACAAACGTGTTGGTTCAAAATATGGCATTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATATCCAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390682" ref_strand="+" ref_description="SGN-E390682 [TUS-46-H6]">
      <seq>gttcatcacggcggcggagtcggaacagcagaagcaacagttgggcatagacagcggtaaagtattggaacttgatgaatctaactttgatgctgcaatttccagttttgattatattttggtcgatttctacgctccttggtgtggtcactgcaaacgacttgcacctcagttggacaaagctgctagcatacttgctgatttgaagaagcccataagtattgcaaaaatagatgctgacaagtacaaacgtgttggttcaaaatatggcattgatggatatccaactttaaagatatttatgcatggtgttccaacagaatattatggaccaagaaaagcagatttacttgtacgattcttgaagaagtttgttgctgctgatgtggccatactcaattctgattcagccattagtgaatttgttgaagcagccggcactagtttccctatatttataggctttggtttgaatgaatctgccatatcacattttgcagtaaaatacaagaagagagcatggttttctgtggcaaaagatttctcggataagaccatggaattctatgattttgacaaggtacctgctttggtagctcgtcatccaaactatgatgaacaaagcatcttctatggcccctttgaagaaaattttgttgaggattatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88726" stop="92875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89026" g_stop="89197" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89198" i_stop="90450" i_length="1253">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90451" g_stop="90554" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="276" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90555" i_stop="91552" i_length="998">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91553" g_stop="91923" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="647" r_length="371" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91924" i_stop="92553" i_length="630">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.490" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92554" g_stop="92575" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="669" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E390682" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89026" e_stop="89197"/>
          <exon e_start="90451" e_stop="90554"/>
          <exon e_start="91553" e_stop="91923"/>
          <exon e_start="92554" e_stop="92575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATCACGGCGGCGGAGTCGGAACAGCAGAAGCAACAGTTGGGCATAGACAGCGGTAAAGTATTGGAACTTGATGAATCTAACTTTGATGCTGCAATTTCCAGTTTTGATTATATTTTGGTCGATTTCTACGCTCCTTGGTGTGGTCACTGCAAACGACTTGCACCTCAGGTCTATTTCCTTTACTCAGTGTTGTTTATTTCTTTTGAAAGTATATAGTAGTGACCTCTACTTTTAAGAGATCTTACTCGAATGTTGTAGAAGCAGTTAACTTTCTAAGTTACGATTGTAAATGTATAACTGCAATAGATAAGATTGGGTTTCTTTACTTCAACTGTGAGTAAATCAGGTATGCGAGATAATTGATCAAATTACTAAGCAGAAAAGCCAGTGAGTTGAATGAATTAAGATCTGAAAACTAGAATAAGCATATACCTAGTTTTATGATACGTTTGCTGGGATATGTAATCTAAATTAGTATTAAAAATAAACTTTATTTAACAATGGTGGTGTCTGGCCAGCTTGTATGTATCCACTATTCATATCCACCAGCACAACTACTGAGTGACTTAGGCCACCAAGCTTAGGCGAAGGTAGAAATCTGATCTTTTTTTTTTTTTGGTCTTTGTCTTTGTTGGGTTTTGAACTCTGATCTATGAGATTTGCACCCAGTTCATGGACCACTAGGCCATATACTTAGGTGCGAAATTAGACTAAAAAGCATAGACGGACTAATTTTGCACTGTTGATGACGTAGATTCAGAACCATAAGGTTTCATGTTATAATCCCATCAGAAGTAAAGAAACACAAGGTGATTTATTGCCATGCGTCCTAACCTTTGGCGGACAAAGAAAAAAACTACCAAAAAAGTTGTGTTTCTACCTTAATCGATAAAGGACTCTTCAATTAACTTCAAAAAGGTTGATTGCTTCTCCAATGAAAAGTTATCTAGACTCTATATTGATTATGTCATTTGGCCAATTCCTAGATTCGGATATCCATACATTTTGTGAAAGTAATTTTTACTATAAATGCTTCCTAAGTATGTTTTGTGCAACCATTGTTATCAGATCTTTCTTTAGGGGGGTAGTTGGTTGGCCGCATCATCAAAATAATCTCCTTATAAAGTCCACATACCCACATGACCAACACAGTGTCTGATTGAACTCATAAGAACAAATAATCTCCGATTAAGTAATGAACTGTTTGATTGATATGGTATTAAGCTTAAGATCACATATTTTTTGCGAGAATCTATGTTTATCTTATCTATCTCTGTTAGATGACTCCCCCACCCCACCCCCCACCCAACCCGCGCGGCGACCACCACGCTCAGATTCATTTAATATGCACATTTCTCTGCGCAAGAATTGAATTCTATGTGATGCGTGGTATCAATCTGATGAATTTAAGTTCGTTGCAGTTGGACAAAGCTGCTAGCATACTTGCTGATTTGAAGAAGCCCATAAGTATTGCAAAAATAGATGCTGACAAGTACAAACGTGTTGGTTCAAAATATGGCATTGAGTATGTGTACTTTTAGCCTTATCACTACATCGTTTTTCTGATATTAGTTTTACAATGTATGATCTGCTTCCGTTTAATAAGGTTTTCAAGAACTCAAAAGAAAGGAGGTATTCATTTGTTTTTCTGATAGTGATCACAACTGTTTGCTTTAAAATTGGATTTCATTTTTACTCTCTTAGGTTGACCATATAGGCAATTTGATTCGTATTCACCTGTGTAAAAGAAGATGATGTGTTTAAGTAAAGGAGTTACAAGTTACAACAGAAGTTTGAAAAGCAAAAAATGTAGATGCTGATAGGTCGTTGAGGGCCCAGCCACATCTATCTTTCTTTGTCCGTACGTCTGCCACGTCCTCTTTTTCCTTTCCTTTACCTTAAACCTCCATTAATTCTACCACTGATAATAATCTGATCTCCTTTGTTCCTGTCCTCTCTCAATCTTGGATCTCTCCTTCATCAATATTGTTCCTTCCCTCTCTTTGTCTAGGATGTACTTATATGGTGCTGATACGTCTGCATATGTGCTGGAGTAGGAAGTAGTATCTTTAGCTAAGTCTGTTGGAGAGGCAGAGTAGCCAGGTGACATACACGGAGAGAGTGTAATCAGGATAGTTGGAATTGATGGACAAAAGAGATGACTAGCTGGACGGGGATTGAGCTTTTTAAGTGGGAAGACTTGAATTTGGGTTCTGATCTACTTTCTGTACCGTCTCTATTTCTAATGAAGCTGGATTACCCCAAGAGTTCACCTGTCGTGTAATTCAATATGTTACTTTTTTTCTGCAAGAGAGCACTGAAAAGCGTCGAAGTGAAGATTTATTAGATGTTATTTGCTCTCCCTTAAACAAATAAAACAAATATAATGCTGAGCTGCAGGAACACATGCTTTATGGAAATTTGATTATTTCTCCCCTCGACTCTTGTTAATGAAATTAAAAGACACTGATCATTTTTATTTTATTAGAAGATATTGAATTTCTCTTTCTGATCTCAATGCAGTGGATATCCAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAATCTGCCATATCACATTTTGCAGTAAAATACAAGAAGAGAGCATGGTTTTCTGTGGCAAAAGATTTCTCGGATAAGACCATGGAATTCTATGATTTTGACAAGGTACCTGCTTTGGTAGCTCGTCATCCAAACTATGATGAACAAAGCATCTTCTATGGCCCCTTTGAAGGTTAGCTTATCATCGCCTGTTATCTTAGGCTTTGGAAGTAATTAAAATCTCACTCACTTTATCAAAAAATTACTCATCTCTTCCTAGAAACTAATAAGAATTAATTATTTTTTTATCGCCTACAAAGGTCCTGAGAAAACCAGAATCTTGTTATATTTAAAGAAGTAACAGTACCACCTGCTCTGTATTTCAAAACTTGCTTTAATTCAATGATTGGCCCTTTATTTGTATTGTGTCACTTAAAAGCAGAAGTCAGCAACTCCAGATTCTGATGTGCTTAAATAATAGGGATCAATCATGAGCTAGTTGTAGTGCTTTCAAAAAGGAAGCATTCAAAAACATCAGTTGACTCTTATGATGAATTCTGATATGGTTTTGATTAGGTGGTTAAGTAATTGATTTGATTGCATGACTATAACCTTATATTATACTTTTCAGTTGATTAAATTGTTTTAGGCTTATTTATGAAAAAAGTTAAATAGCTTTAACTTCCAACCTGCCAACATTTGCTGTATTTTCTGTACTGCATGAAAAAACAAACTGATTTAAGAATTGAGCTGAAGTTGTGTTTTGGGGATTTCTGCGAAATAATGGTGAATATCTGAACCTTCTTCCTGCTATGGATCACAGAAAATTTTGTTGAGGATTATAT</genome_strand>
        <mrna_strand>GTTCATCACGGCGGCGGAGTCGGAACAGCAGAAGCAACAGTTGGGCATAGACAGCGGTAAAGTATTGGAACTTGATGAATCTAACTTTGATGCTGCAATTTCCAGTTTTGATTATATTTTGGTCGATTTCTACGCTCCTTGGTGTGGTCACTGCAAACGACTTGCACCTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACAAAGCTGCTAGCATACTTGCTGATTTGAAGAAGCCCATAAGTATTGCAAAAATAGATGCTGACAAGTACAAACGTGTTGGTTCAAAATATGGCATTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATATCCAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAATCTGCCATATCACATTTTGCAGTAAAATACAAGAAGAGAGCATGGTTTTCTGTGGCAAAAGATTTCTCGGATAAGACCATGGAATTCTATGATTTTGACAAGGTACCTGCTTTGGTAGCTCGTCATCCAAACTATGATGAACAAAGCATCTTCTATGGCCCCTTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTTTGTTGAGGATTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373998" ref_strand="+" ref_description="SGN-E373998 [TUS-33-A9]">
      <seq>ttcatcacggcggcggagtcggaacagcagaagcaacagttgggcatagacagcggtaaagtattggaacttgatgaatctaactttgatgctgcaatttccagttttgattatattttggtcgatttctacgctccttggtgtggtcactgcaaacgacttgcacctcagttggacaaagctgctagcatacttgctgatttgaagaagcccataagtattgcaaaaatagatgctgacaagtacaaacgtgttggttcaaaatatggcattgatggatatccaactttaaagatatttatgcatggtgttccaacagaatattatggaccaagaaaagcagatttacttgtacgattcttgaagaagtttgttgctgctgatgtggccatactcaattctgattcagccattagtgaatttgttgaagcagccggcactagtttccctatatttataggctttggtttgaatgaatctgccatatcacattttgcagtaaaatacaagaagagagcatggttttctgtggcaaaagatttctcggataagaccatggaattctatgattttgacaaggtacctgctttggtagctcgtcatccaaactatgatgaacaaagcatcttctatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88727" stop="92213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89027" g_stop="89197" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89198" i_stop="90450" i_length="1253">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90451" g_stop="90554" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="275" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90555" i_stop="91552" i_length="998">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91553" g_stop="91913" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="636" r_length="361" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E373998" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89027" e_stop="89197"/>
          <exon e_start="90451" e_stop="90554"/>
          <exon e_start="91553" e_stop="91913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCACGGCGGCGGAGTCGGAACAGCAGAAGCAACAGTTGGGCATAGACAGCGGTAAAGTATTGGAACTTGATGAATCTAACTTTGATGCTGCAATTTCCAGTTTTGATTATATTTTGGTCGATTTCTACGCTCCTTGGTGTGGTCACTGCAAACGACTTGCACCTCAGGTCTATTTCCTTTACTCAGTGTTGTTTATTTCTTTTGAAAGTATATAGTAGTGACCTCTACTTTTAAGAGATCTTACTCGAATGTTGTAGAAGCAGTTAACTTTCTAAGTTACGATTGTAAATGTATAACTGCAATAGATAAGATTGGGTTTCTTTACTTCAACTGTGAGTAAATCAGGTATGCGAGATAATTGATCAAATTACTAAGCAGAAAAGCCAGTGAGTTGAATGAATTAAGATCTGAAAACTAGAATAAGCATATACCTAGTTTTATGATACGTTTGCTGGGATATGTAATCTAAATTAGTATTAAAAATAAACTTTATTTAACAATGGTGGTGTCTGGCCAGCTTGTATGTATCCACTATTCATATCCACCAGCACAACTACTGAGTGACTTAGGCCACCAAGCTTAGGCGAAGGTAGAAATCTGATCTTTTTTTTTTTTTGGTCTTTGTCTTTGTTGGGTTTTGAACTCTGATCTATGAGATTTGCACCCAGTTCATGGACCACTAGGCCATATACTTAGGTGCGAAATTAGACTAAAAAGCATAGACGGACTAATTTTGCACTGTTGATGACGTAGATTCAGAACCATAAGGTTTCATGTTATAATCCCATCAGAAGTAAAGAAACACAAGGTGATTTATTGCCATGCGTCCTAACCTTTGGCGGACAAAGAAAAAAACTACCAAAAAAGTTGTGTTTCTACCTTAATCGATAAAGGACTCTTCAATTAACTTCAAAAAGGTTGATTGCTTCTCCAATGAAAAGTTATCTAGACTCTATATTGATTATGTCATTTGGCCAATTCCTAGATTCGGATATCCATACATTTTGTGAAAGTAATTTTTACTATAAATGCTTCCTAAGTATGTTTTGTGCAACCATTGTTATCAGATCTTTCTTTAGGGGGGTAGTTGGTTGGCCGCATCATCAAAATAATCTCCTTATAAAGTCCACATACCCACATGACCAACACAGTGTCTGATTGAACTCATAAGAACAAATAATCTCCGATTAAGTAATGAACTGTTTGATTGATATGGTATTAAGCTTAAGATCACATATTTTTTGCGAGAATCTATGTTTATCTTATCTATCTCTGTTAGATGACTCCCCCACCCCACCCCCCACCCAACCCGCGCGGCGACCACCACGCTCAGATTCATTTAATATGCACATTTCTCTGCGCAAGAATTGAATTCTATGTGATGCGTGGTATCAATCTGATGAATTTAAGTTCGTTGCAGTTGGACAAAGCTGCTAGCATACTTGCTGATTTGAAGAAGCCCATAAGTATTGCAAAAATAGATGCTGACAAGTACAAACGTGTTGGTTCAAAATATGGCATTGAGTATGTGTACTTTTAGCCTTATCACTACATCGTTTTTCTGATATTAGTTTTACAATGTATGATCTGCTTCCGTTTAATAAGGTTTTCAAGAACTCAAAAGAAAGGAGGTATTCATTTGTTTTTCTGATAGTGATCACAACTGTTTGCTTTAAAATTGGATTTCATTTTTACTCTCTTAGGTTGACCATATAGGCAATTTGATTCGTATTCACCTGTGTAAAAGAAGATGATGTGTTTAAGTAAAGGAGTTACAAGTTACAACAGAAGTTTGAAAAGCAAAAAATGTAGATGCTGATAGGTCGTTGAGGGCCCAGCCACATCTATCTTTCTTTGTCCGTACGTCTGCCACGTCCTCTTTTTCCTTTCCTTTACCTTAAACCTCCATTAATTCTACCACTGATAATAATCTGATCTCCTTTGTTCCTGTCCTCTCTCAATCTTGGATCTCTCCTTCATCAATATTGTTCCTTCCCTCTCTTTGTCTAGGATGTACTTATATGGTGCTGATACGTCTGCATATGTGCTGGAGTAGGAAGTAGTATCTTTAGCTAAGTCTGTTGGAGAGGCAGAGTAGCCAGGTGACATACACGGAGAGAGTGTAATCAGGATAGTTGGAATTGATGGACAAAAGAGATGACTAGCTGGACGGGGATTGAGCTTTTTAAGTGGGAAGACTTGAATTTGGGTTCTGATCTACTTTCTGTACCGTCTCTATTTCTAATGAAGCTGGATTACCCCAAGAGTTCACCTGTCGTGTAATTCAATATGTTACTTTTTTTCTGCAAGAGAGCACTGAAAAGCGTCGAAGTGAAGATTTATTAGATGTTATTTGCTCTCCCTTAAACAAATAAAACAAATATAATGCTGAGCTGCAGGAACACATGCTTTATGGAAATTTGATTATTTCTCCCCTCGACTCTTGTTAATGAAATTAAAAGACACTGATCATTTTTATTTTATTAGAAGATATTGAATTTCTCTTTCTGATCTCAATGCAGTGGATATCCAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAATCTGCCATATCACATTTTGCAGTAAAATACAAGAAGAGAGCATGGTTTTCTGTGGCAAAAGATTTCTCGGATAAGACCATGGAATTCTATGATTTTGACAAGGTACCTGCTTTGGTAGCTCGTCATCCAAACTATGATGAACAAAGCATCTTCTATGGC</genome_strand>
        <mrna_strand>TTCATCACGGCGGCGGAGTCGGAACAGCAGAAGCAACAGTTGGGCATAGACAGCGGTAAAGTATTGGAACTTGATGAATCTAACTTTGATGCTGCAATTTCCAGTTTTGATTATATTTTGGTCGATTTCTACGCTCCTTGGTGTGGTCACTGCAAACGACTTGCACCTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACAAAGCTGCTAGCATACTTGCTGATTTGAAGAAGCCCATAAGTATTGCAAAAATAGATGCTGACAAGTACAAACGTGTTGGTTCAAAATATGGCATTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATATCCAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAATCTGCCATATCACATTTTGCAGTAAAATACAAGAAGAGAGCATGGTTTTCTGTGGCAAAAGATTTCTCGGATAAGACCATGGAATTCTATGATTTTGACAAGGTACCTGCTTTGGTAGCTCGTCATCCAAACTATGATGAACAAAGCATCTTCTATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298703" ref_strand="+" ref_description="SGN-E298703 [cLET-44-L7]">
      <seq>ttcatcacggcggcggagtcggaacatctgaagcaacagttgggcatagacagcggtaaagtattggaacttgatgaatctaactttgatgctgcaatttccagttttgattatattttggtcgatttctacgctccttggtgtggtcactgcaaacgacttgcacctcatttggacaaagctgctagcatacttgctgatttgaagaagcccataagtattgcaaaaatagatgctgacaagtacaaacgtgttggttcaaaatatggcattgatggatatccaactttaaagatatttatgcatggtgttccaacagaatattatggaccaagaaaagcagatttacttgtacgattcttgaagaagtttgttgctgctgatgtggccatactcaattctgattcagccattagtgaatttgttgaagcagccggcactagtttccctatatttataggctttggtttgaatgaatctgccatatcacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88727" stop="92071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89027" g_stop="89197" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89198" i_stop="90450" i_length="1253">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90451" g_stop="90554" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="275" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90555" i_stop="91552" i_length="998">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91553" g_stop="91771" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="494" r_length="219" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E298703" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89027" e_stop="89197"/>
          <exon e_start="90451" e_stop="90554"/>
          <exon e_start="91553" e_stop="91771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCACGGCGGCGGAGTCGGAACAGCAGAAGCAACAGTTGGGCATAGACAGCGGTAAAGTATTGGAACTTGATGAATCTAACTTTGATGCTGCAATTTCCAGTTTTGATTATATTTTGGTCGATTTCTACGCTCCTTGGTGTGGTCACTGCAAACGACTTGCACCTCAGGTCTATTTCCTTTACTCAGTGTTGTTTATTTCTTTTGAAAGTATATAGTAGTGACCTCTACTTTTAAGAGATCTTACTCGAATGTTGTAGAAGCAGTTAACTTTCTAAGTTACGATTGTAAATGTATAACTGCAATAGATAAGATTGGGTTTCTTTACTTCAACTGTGAGTAAATCAGGTATGCGAGATAATTGATCAAATTACTAAGCAGAAAAGCCAGTGAGTTGAATGAATTAAGATCTGAAAACTAGAATAAGCATATACCTAGTTTTATGATACGTTTGCTGGGATATGTAATCTAAATTAGTATTAAAAATAAACTTTATTTAACAATGGTGGTGTCTGGCCAGCTTGTATGTATCCACTATTCATATCCACCAGCACAACTACTGAGTGACTTAGGCCACCAAGCTTAGGCGAAGGTAGAAATCTGATCTTTTTTTTTTTTTGGTCTTTGTCTTTGTTGGGTTTTGAACTCTGATCTATGAGATTTGCACCCAGTTCATGGACCACTAGGCCATATACTTAGGTGCGAAATTAGACTAAAAAGCATAGACGGACTAATTTTGCACTGTTGATGACGTAGATTCAGAACCATAAGGTTTCATGTTATAATCCCATCAGAAGTAAAGAAACACAAGGTGATTTATTGCCATGCGTCCTAACCTTTGGCGGACAAAGAAAAAAACTACCAAAAAAGTTGTGTTTCTACCTTAATCGATAAAGGACTCTTCAATTAACTTCAAAAAGGTTGATTGCTTCTCCAATGAAAAGTTATCTAGACTCTATATTGATTATGTCATTTGGCCAATTCCTAGATTCGGATATCCATACATTTTGTGAAAGTAATTTTTACTATAAATGCTTCCTAAGTATGTTTTGTGCAACCATTGTTATCAGATCTTTCTTTAGGGGGGTAGTTGGTTGGCCGCATCATCAAAATAATCTCCTTATAAAGTCCACATACCCACATGACCAACACAGTGTCTGATTGAACTCATAAGAACAAATAATCTCCGATTAAGTAATGAACTGTTTGATTGATATGGTATTAAGCTTAAGATCACATATTTTTTGCGAGAATCTATGTTTATCTTATCTATCTCTGTTAGATGACTCCCCCACCCCACCCCCCACCCAACCCGCGCGGCGACCACCACGCTCAGATTCATTTAATATGCACATTTCTCTGCGCAAGAATTGAATTCTATGTGATGCGTGGTATCAATCTGATGAATTTAAGTTCGTTGCAGTTGGACAAAGCTGCTAGCATACTTGCTGATTTGAAGAAGCCCATAAGTATTGCAAAAATAGATGCTGACAAGTACAAACGTGTTGGTTCAAAATATGGCATTGAGTATGTGTACTTTTAGCCTTATCACTACATCGTTTTTCTGATATTAGTTTTACAATGTATGATCTGCTTCCGTTTAATAAGGTTTTCAAGAACTCAAAAGAAAGGAGGTATTCATTTGTTTTTCTGATAGTGATCACAACTGTTTGCTTTAAAATTGGATTTCATTTTTACTCTCTTAGGTTGACCATATAGGCAATTTGATTCGTATTCACCTGTGTAAAAGAAGATGATGTGTTTAAGTAAAGGAGTTACAAGTTACAACAGAAGTTTGAAAAGCAAAAAATGTAGATGCTGATAGGTCGTTGAGGGCCCAGCCACATCTATCTTTCTTTGTCCGTACGTCTGCCACGTCCTCTTTTTCCTTTCCTTTACCTTAAACCTCCATTAATTCTACCACTGATAATAATCTGATCTCCTTTGTTCCTGTCCTCTCTCAATCTTGGATCTCTCCTTCATCAATATTGTTCCTTCCCTCTCTTTGTCTAGGATGTACTTATATGGTGCTGATACGTCTGCATATGTGCTGGAGTAGGAAGTAGTATCTTTAGCTAAGTCTGTTGGAGAGGCAGAGTAGCCAGGTGACATACACGGAGAGAGTGTAATCAGGATAGTTGGAATTGATGGACAAAAGAGATGACTAGCTGGACGGGGATTGAGCTTTTTAAGTGGGAAGACTTGAATTTGGGTTCTGATCTACTTTCTGTACCGTCTCTATTTCTAATGAAGCTGGATTACCCCAAGAGTTCACCTGTCGTGTAATTCAATATGTTACTTTTTTTCTGCAAGAGAGCACTGAAAAGCGTCGAAGTGAAGATTTATTAGATGTTATTTGCTCTCCCTTAAACAAATAAAACAAATATAATGCTGAGCTGCAGGAACACATGCTTTATGGAAATTTGATTATTTCTCCCCTCGACTCTTGTTAATGAAATTAAAAGACACTGATCATTTTTATTTTATTAGAAGATATTGAATTTCTCTTTCTGATCTCAATGCAGTGGATATCCAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAATCTGCCATATCACATTT</genome_strand>
        <mrna_strand>TTCATCACGGCGGCGGAGTCGGAACATCTGAAGCAACAGTTGGGCATAGACAGCGGTAAAGTATTGGAACTTGATGAATCTAACTTTGATGCTGCAATTTCCAGTTTTGATTATATTTTGGTCGATTTCTACGCTCCTTGGTGTGGTCACTGCAAACGACTTGCACCTCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACAAAGCTGCTAGCATACTTGCTGATTTGAAGAAGCCCATAAGTATTGCAAAAATAGATGCTGACAAGTACAAACGTGTTGGTTCAAAATATGGCATTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATATCCAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAATCTGCCATATCACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590323" ref_strand="+" ref_description="SGN-E590323 [43917]">
      <seq>gcaatttccaatttcgattatattttggttgatttctacgctccttggtgtggacactgcaaacgacttgctcctcagttggacaaagctgctagcattcttgctgatttgaagcagcccataagtattgcaaaaatagatgctgacaagtacaaacgtgttggttcaaaatatggcatcgatggatatccaactttaaagatatttatgcatggtgttccaacagaatattatggaccaagaaaagcagatttacttgtacgattcttgaagaagtttgtcgctgctgatgtggccatactcaattctgactcagccattagtgaatttgttgaagcagctggcactagttttcctatattcataggctttggtttgaatgaatctgctatatcgcattttgcagtaaaatacaagaagagagcatggttttctgtggcaaaagatttctcggataaaaccatggaattctatgattttgacaaagtacctgctttggtagctcgtcatccaaattatgatgaacaaagcatcttctatagcccctttgaagaaaaatttgttgaggattatatcaagcagagtttgctcccactgactttgcccattactgaagaaactctgagattgctgaaagatgatgagagaaaagttattctaacaattttggaagatgaaagtgatgataggtctaagaaattagtgaagctcctgaaagctgctgcatctgcaaaccgggacttcgtgtttggttggtcgggttcaagcaatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88820" stop="93075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89120" g_stop="89197" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89198" i_stop="90450" i_length="1253">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.859" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90451" g_stop="90554" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="182" r_length="104" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90555" i_stop="91552" i_length="998">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91553" g_stop="91923" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="553" r_length="371" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91924" i_stop="92553" i_length="630">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.490" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92554" g_stop="92775" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="774" r_length="221" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E590323" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89120" e_stop="89197"/>
          <exon e_start="90451" e_stop="90554"/>
          <exon e_start="91553" e_stop="91923"/>
          <exon e_start="92554" e_stop="92775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTTCCAGTTTTGATTATATTTTGGTCGATTTCTACGCTCCTTGGTGTGGTCACTGCAAACGACTTGCACCTCAGGTCTATTTCCTTTACTCAGTGTTGTTTATTTCTTTTGAAAGTATATAGTAGTGACCTCTACTTTTAAGAGATCTTACTCGAATGTTGTAGAAGCAGTTAACTTTCTAAGTTACGATTGTAAATGTATAACTGCAATAGATAAGATTGGGTTTCTTTACTTCAACTGTGAGTAAATCAGGTATGCGAGATAATTGATCAAATTACTAAGCAGAAAAGCCAGTGAGTTGAATGAATTAAGATCTGAAAACTAGAATAAGCATATACCTAGTTTTATGATACGTTTGCTGGGATATGTAATCTAAATTAGTATTAAAAATAAACTTTATTTAACAATGGTGGTGTCTGGCCAGCTTGTATGTATCCACTATTCATATCCACCAGCACAACTACTGAGTGACTTAGGCCACCAAGCTTAGGCGAAGGTAGAAATCTGATCTTTTTTTTTTTTTGGTCTTTGTCTTTGTTGGGTTTTGAACTCTGATCTATGAGATTTGCACCCAGTTCATGGACCACTAGGCCATATACTTAGGTGCGAAATTAGACTAAAAAGCATAGACGGACTAATTTTGCACTGTTGATGACGTAGATTCAGAACCATAAGGTTTCATGTTATAATCCCATCAGAAGTAAAGAAACACAAGGTGATTTATTGCCATGCGTCCTAACCTTTGGCGGACAAAGAAAAAAACTACCAAAAAAGTTGTGTTTCTACCTTAATCGATAAAGGACTCTTCAATTAACTTCAAAAAGGTTGATTGCTTCTCCAATGAAAAGTTATCTAGACTCTATATTGATTATGTCATTTGGCCAATTCCTAGATTCGGATATCCATACATTTTGTGAAAGTAATTTTTACTATAAATGCTTCCTAAGTATGTTTTGTGCAACCATTGTTATCAGATCTTTCTTTAGGGGGGTAGTTGGTTGGCCGCATCATCAAAATAATCTCCTTATAAAGTCCACATACCCACATGACCAACACAGTGTCTGATTGAACTCATAAGAACAAATAATCTCCGATTAAGTAATGAACTGTTTGATTGATATGGTATTAAGCTTAAGATCACATATTTTTTGCGAGAATCTATGTTTATCTTATCTATCTCTGTTAGATGACTCCCCCACCCCACCCCCCACCCAACCCGCGCGGCGACCACCACGCTCAGATTCATTTAATATGCACATTTCTCTGCGCAAGAATTGAATTCTATGTGATGCGTGGTATCAATCTGATGAATTTAAGTTCGTTGCAGTTGGACAAAGCTGCTAGCATACTTGCTGATTTGAAGAAGCCCATAAGTATTGCAAAAATAGATGCTGACAAGTACAAACGTGTTGGTTCAAAATATGGCATTGAGTATGTGTACTTTTAGCCTTATCACTACATCGTTTTTCTGATATTAGTTTTACAATGTATGATCTGCTTCCGTTTAATAAGGTTTTCAAGAACTCAAAAGAAAGGAGGTATTCATTTGTTTTTCTGATAGTGATCACAACTGTTTGCTTTAAAATTGGATTTCATTTTTACTCTCTTAGGTTGACCATATAGGCAATTTGATTCGTATTCACCTGTGTAAAAGAAGATGATGTGTTTAAGTAAAGGAGTTACAAGTTACAACAGAAGTTTGAAAAGCAAAAAATGTAGATGCTGATAGGTCGTTGAGGGCCCAGCCACATCTATCTTTCTTTGTCCGTACGTCTGCCACGTCCTCTTTTTCCTTTCCTTTACCTTAAACCTCCATTAATTCTACCACTGATAATAATCTGATCTCCTTTGTTCCTGTCCTCTCTCAATCTTGGATCTCTCCTTCATCAATATTGTTCCTTCCCTCTCTTTGTCTAGGATGTACTTATATGGTGCTGATACGTCTGCATATGTGCTGGAGTAGGAAGTAGTATCTTTAGCTAAGTCTGTTGGAGAGGCAGAGTAGCCAGGTGACATACACGGAGAGAGTGTAATCAGGATAGTTGGAATTGATGGACAAAAGAGATGACTAGCTGGACGGGGATTGAGCTTTTTAAGTGGGAAGACTTGAATTTGGGTTCTGATCTACTTTCTGTACCGTCTCTATTTCTAATGAAGCTGGATTACCCCAAGAGTTCACCTGTCGTGTAATTCAATATGTTACTTTTTTTCTGCAAGAGAGCACTGAAAAGCGTCGAAGTGAAGATTTATTAGATGTTATTTGCTCTCCCTTAAACAAATAAAACAAATATAATGCTGAGCTGCAGGAACACATGCTTTATGGAAATTTGATTATTTCTCCCCTCGACTCTTGTTAATGAAATTAAAAGACACTGATCATTTTTATTTTATTAGAAGATATTGAATTTCTCTTTCTGATCTCAATGCAGTGGATATCCAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAATCTGCCATATCACATTTTGCAGTAAAATACAAGAAGAGAGCATGGTTTTCTGTGGCAAAAGATTTCTCGGATAAGACCATGGAATTCTATGATTTTGACAAGGTACCTGCTTTGGTAGCTCGTCATCCAAACTATGATGAACAAAGCATCTTCTATGGCCCCTTTGAAGGTTAGCTTATCATCGCCTGTTATCTTAGGCTTTGGAAGTAATTAAAATCTCACTCACTTTATCAAAAAATTACTCATCTCTTCCTAGAAACTAATAAGAATTAATTATTTTTTTATCGCCTACAAAGGTCCTGAGAAAACCAGAATCTTGTTATATTTAAAGAAGTAACAGTACCACCTGCTCTGTATTTCAAAACTTGCTTTAATTCAATGATTGGCCCTTTATTTGTATTGTGTCACTTAAAAGCAGAAGTCAGCAACTCCAGATTCTGATGTGCTTAAATAATAGGGATCAATCATGAGCTAGTTGTAGTGCTTTCAAAAAGGAAGCATTCAAAAACATCAGTTGACTCTTATGATGAATTCTGATATGGTTTTGATTAGGTGGTTAAGTAATTGATTTGATTGCATGACTATAACCTTATATTATACTTTTCAGTTGATTAAATTGTTTTAGGCTTATTTATGAAAAAAGTTAAATAGCTTTAACTTCCAACCTGCCAACATTTGCTGTATTTTCTGTACTGCATGAAAAAACAAACTGATTTAAGAATTGAGCTGAAGTTGTGTTTTGGGGATTTCTGCGAAATAATGGTGAATATCTGAACCTTCTTCCTGCTATGGATCACAGAAAATTTTGTTGAGGATTATATCAAGCAGAGTTTGCTCCCACTGACTTTGCCCATTACTGAAGAAACTCTGAGATTGCTGAAAGATGATGAGAGAAAAGTTATTCTAACAATTTTGGAAGATGAAACTGATGATAGGTCTAAGAAATTATTGAAGCTCCTGAAAGCTGCTGCATCTGCAAACCGCGACTTCGTGTTTGTTTTTGTTGGGTTCAAGCAATGGC</genome_strand>
        <mrna_strand>GCAATTTCCAATTTCGATTATATTTTGGTTGATTTCTACGCTCCTTGGTGTGGACACTGCAAACGACTTGCTCCTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACAAAGCTGCTAGCATTCTTGCTGATTTGAAGCAGCCCATAAGTATTGCAAAAATAGATGCTGACAAGTACAAACGTGTTGGTTCAAAATATGGCATCGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATATCCAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTCGCTGCTGATGTGGCCATACTCAATTCTGACTCAGCCATTAGTGAATTTGTTGAAGCAGCTGGCACTAGTTTTCCTATATTCATAGGCTTTGGTTTGAATGAATCTGCTATATCGCATTTTGCAGTAAAATACAAGAAGAGAGCATGGTTTTCTGTGGCAAAAGATTTCTCGGATAAAACCATGGAATTCTATGATTTTGACAAAGTACCTGCTTTGGTAGCTCGTCATCCAAATTATGATGAACAAAGCATCTTCTATAGCCCCTTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATTTGTTGAGGATTATATCAAGCAGAGTTTGCTCCCACTGACTTTGCCCATTACTGAAGAAACTCTGAGATTGCTGAAAGATGATGAGAGAAAAGTTATTCTAACAATTTTGGAAGATGAAAGTGATGATAGGTCTAAGAAATTAGTGAAGCTCCTGAAAGCTGCTGCATCTGCAAACCGGGACTTCGTGTTTG-GTTGGTCGGGTTCAAGCAATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705532" ref_strand="+" ref_description="SGN-E705532 [FA27BF09]">
      <seq>aaaaatagatgctgacaagtacaaacgtgttggttcaaaatatggcattgatggatatccaactttaaagatatttatgcatggtgttccaacagaatattatggaccaagaaaagcagatttacttgtacgattcttgaagaagtttgttgctgctgatgtggccatactcaattctgattcagccattagtgaatttgttgaagcagccggcactagtttccctatatttataggctttggtttgaatgaatctgccatatcacattttgcagtaaaatacaagaagagagcatggttttctgtggcaaaagatttctcggataagaccatggaattctatgattttgacaaggtacctgctttggtagctcgtcatccaaactatgatgaacaaagcatcttctatggcccctttgaagaaaattttgttgaggattatatcaagcagagtttgctcccactgactttgcccattactgaagaaactctgagattgctgaaagatgatgagagaaaagttattctaacaattttggaagatgaaactgatgataggtctaagaaattattgaagctcctgaaagctgctgcatctgcaaaccgcgacttcgtgtttgtttttgttgggttcaagcaatggcaagggtttgctgaatcatttgacgtttctaagaaaactaagctgccaaaaatggttgtttgggatggcgatgaggagtacttttcagttgttggctctgagagcgttgaagatgaagatcaggggtcccaaattacacattttattcaaggatacaaagacggaaatatcatacagaaacgtattagctctggttctttcatgggtttcataaactcaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90204" stop="93755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90504" g_stop="90554" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90555" i_stop="91552" i_length="998">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91553" g_stop="91923" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="422" r_length="371" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91924" i_stop="92553" i_length="630">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.490" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92554" g_stop="92861" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="730" r_length="308" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92862" i_stop="93318" i_length="457">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93319" g_stop="93455" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="867" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E705532" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90504" e_stop="90554"/>
          <exon e_start="91553" e_stop="91923"/>
          <exon e_start="92554" e_stop="92861"/>
          <exon e_start="93319" e_stop="93455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATAGATGCTGACAAGTACAAACGTGTTGGTTCAAAATATGGCATTGAGTATGTGTACTTTTAGCCTTATCACTACATCGTTTTTCTGATATTAGTTTTACAATGTATGATCTGCTTCCGTTTAATAAGGTTTTCAAGAACTCAAAAGAAAGGAGGTATTCATTTGTTTTTCTGATAGTGATCACAACTGTTTGCTTTAAAATTGGATTTCATTTTTACTCTCTTAGGTTGACCATATAGGCAATTTGATTCGTATTCACCTGTGTAAAAGAAGATGATGTGTTTAAGTAAAGGAGTTACAAGTTACAACAGAAGTTTGAAAAGCAAAAAATGTAGATGCTGATAGGTCGTTGAGGGCCCAGCCACATCTATCTTTCTTTGTCCGTACGTCTGCCACGTCCTCTTTTTCCTTTCCTTTACCTTAAACCTCCATTAATTCTACCACTGATAATAATCTGATCTCCTTTGTTCCTGTCCTCTCTCAATCTTGGATCTCTCCTTCATCAATATTGTTCCTTCCCTCTCTTTGTCTAGGATGTACTTATATGGTGCTGATACGTCTGCATATGTGCTGGAGTAGGAAGTAGTATCTTTAGCTAAGTCTGTTGGAGAGGCAGAGTAGCCAGGTGACATACACGGAGAGAGTGTAATCAGGATAGTTGGAATTGATGGACAAAAGAGATGACTAGCTGGACGGGGATTGAGCTTTTTAAGTGGGAAGACTTGAATTTGGGTTCTGATCTACTTTCTGTACCGTCTCTATTTCTAATGAAGCTGGATTACCCCAAGAGTTCACCTGTCGTGTAATTCAATATGTTACTTTTTTTCTGCAAGAGAGCACTGAAAAGCGTCGAAGTGAAGATTTATTAGATGTTATTTGCTCTCCCTTAAACAAATAAAACAAATATAATGCTGAGCTGCAGGAACACATGCTTTATGGAAATTTGATTATTTCTCCCCTCGACTCTTGTTAATGAAATTAAAAGACACTGATCATTTTTATTTTATTAGAAGATATTGAATTTCTCTTTCTGATCTCAATGCAGTGGATATCCAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAATCTGCCATATCACATTTTGCAGTAAAATACAAGAAGAGAGCATGGTTTTCTGTGGCAAAAGATTTCTCGGATAAGACCATGGAATTCTATGATTTTGACAAGGTACCTGCTTTGGTAGCTCGTCATCCAAACTATGATGAACAAAGCATCTTCTATGGCCCCTTTGAAGGTTAGCTTATCATCGCCTGTTATCTTAGGCTTTGGAAGTAATTAAAATCTCACTCACTTTATCAAAAAATTACTCATCTCTTCCTAGAAACTAATAAGAATTAATTATTTTTTTATCGCCTACAAAGGTCCTGAGAAAACCAGAATCTTGTTATATTTAAAGAAGTAACAGTACCACCTGCTCTGTATTTCAAAACTTGCTTTAATTCAATGATTGGCCCTTTATTTGTATTGTGTCACTTAAAAGCAGAAGTCAGCAACTCCAGATTCTGATGTGCTTAAATAATAGGGATCAATCATGAGCTAGTTGTAGTGCTTTCAAAAAGGAAGCATTCAAAAACATCAGTTGACTCTTATGATGAATTCTGATATGGTTTTGATTAGGTGGTTAAGTAATTGATTTGATTGCATGACTATAACCTTATATTATACTTTTCAGTTGATTAAATTGTTTTAGGCTTATTTATGAAAAAAGTTAAATAGCTTTAACTTCCAACCTGCCAACATTTGCTGTATTTTCTGTACTGCATGAAAAAACAAACTGATTTAAGAATTGAGCTGAAGTTGTGTTTTGGGGATTTCTGCGAAATAATGGTGAATATCTGAACCTTCTTCCTGCTATGGATCACAGAAAATTTTGTTGAGGATTATATCAAGCAGAGTTTGCTCCCACTGACTTTGCCCATTACTGAAGAAACTCTGAGATTGCTGAAAGATGATGAGAGAAAAGTTATTCTAACAATTTTGGAAGATGAAACTGATGATAGGTCTAAGAAATTATTGAAGCTCCTGAAAGCTGCTGCATCTGCAAACCGCGACTTCGTGTTTGTTTTTGTTGGGTTCAAGCAATGGCAAGGGTTTGCTGAATCATTTGACGTTTCTAAGAAAACTAAGCTGCCAAAAATGGTTGTTTGGGATGGCGATGAGGAGTACTTTTCAGTAAGTTCATTTACTTCTTTTTCTCTCCCTTTCCAGTTCCCCGCTAGGGATTGCATATTTGTCGACCCTTATCAAGTGTAGGAAATATACTTTATAGTTTGGAGTCTGGACTTTTTTCTTGTCTAACACGGCTAAAATATAGTGCTTTCAACTTATCGACTGAAGTGAACGATGAACTTTTCATTTTTGCTTAGTGTTCTGACTAAAATAAACAGCAGGGATAAACTGTACTTAACCGTACTTATTAATTGGTATCATTTCACTGCATGACACTTAATTATGTTGTTTCTCCAAGTCTGTGAGATGCCTTTTGTGAATAATATCTACCAGTAATTTTCAGTGGTTTATTAGAAGAGAGAGACATTATTTATACATAATCTACTTCTAGGTGAAGTGTCTTTTGACTAAATCACTATAAATTTAACGTAATGATTACAATTTTTTACTCATGCAACAGGTTGTTGGCTCTGAGAGCGTTGAAGATGAAGATCAGGGGTCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATCATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGAT</genome_strand>
        <mrna_strand>AAAAATAGATGCTGACAAGTACAAACGTGTTGGTTCAAAATATGGCATTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATATCCAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAATCTGCCATATCACATTTTGCAGTAAAATACAAGAAGAGAGCATGGTTTTCTGTGGCAAAAGATTTCTCGGATAAGACCATGGAATTCTATGATTTTGACAAGGTACCTGCTTTGGTAGCTCGTCATCCAAACTATGATGAACAAAGCATCTTCTATGGCCCCTTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTTTGTTGAGGATTATATCAAGCAGAGTTTGCTCCCACTGACTTTGCCCATTACTGAAGAAACTCTGAGATTGCTGAAAGATGATGAGAGAAAAGTTATTCTAACAATTTTGGAAGATGAAACTGATGATAGGTCTAAGAAATTATTGAAGCTCCTGAAAGCTGCTGCATCTGCAAACCGCGACTTCGTGTTTGTTTTTGTTGGGTTCAAGCAATGGCAAGGGTTTGCTGAATCATTTGACGTTTCTAAGAAAACTAAGCTGCCAAAAATGGTTGTTTGGGATGGCGATGAGGAGTACTTTTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGCTCTGAGAGCGTTGAAGATGAAGATCAGGGGTCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATCATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708299" ref_strand="+" ref_description="SGN-E708299 [FA35BE11]">
      <seq>ccattttagagatatttatgcatggtgttccaacagaatattatggaccaagaaaagcagatttacttgtacgattcttgaagaagtttgttgctgctgatgtggccatactcaattctgattcagccattagtgaatttgttgaagcagccggcactagtttccctatatttataggctttggtttgaatgaatctgccatatcacattttgcagtaaaatacaagaagagagcatggttttctgtggcaaaagatttctcggataagaccatggaattctatgattttgacaaggtacctgctttggtagctcgtcatccaaactatgatgaacaaagcatcttctatggcccctttgaagaaaattttgttgaggattatatcaagcagagtttgctcccactgactttgcccattactgaagaaactctgagattgctgaaagatgatgagagaaaagttattctaacaattttggaagatgaaactgatgataggtctaagaaattattgaagctcctgaaagctgctgcatctgcaaaccgcgacttcgtgtttgtttttgttgggttcaagcaatggcaagggtttgctgaatcatttgacgtttctaagaaaactaagctgccaaaaatggttgtttgggatggcgatgaggagtacttttcagttgttggctctgagagcgttgaagatgaagatcaggggtcccaaattacacattttattcaaggatacaaagacggaaatatcatacagaaacgtattagctctggttctttcatgggtttcataaactcaatgataggtttgggaacagtgaccatcatagtgtttgtgggttgcgtggtgatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="91261" stop="93807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91561" g_stop="91923" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91924" i_stop="92553" i_length="630">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.490" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92554" g_stop="92861" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="671" r_length="308" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92862" i_stop="93318" i_length="457">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93319" g_stop="93507" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="860" r_length="189" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E708299" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91561" e_stop="91923"/>
          <exon e_start="92554" e_stop="92861"/>
          <exon e_start="93319" e_stop="93507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAATCTGCCATATCACATTTTGCAGTAAAATACAAGAAGAGAGCATGGTTTTCTGTGGCAAAAGATTTCTCGGATAAGACCATGGAATTCTATGATTTTGACAAGGTACCTGCTTTGGTAGCTCGTCATCCAAACTATGATGAACAAAGCATCTTCTATGGCCCCTTTGAAGGTTAGCTTATCATCGCCTGTTATCTTAGGCTTTGGAAGTAATTAAAATCTCACTCACTTTATCAAAAAATTACTCATCTCTTCCTAGAAACTAATAAGAATTAATTATTTTTTTATCGCCTACAAAGGTCCTGAGAAAACCAGAATCTTGTTATATTTAAAGAAGTAACAGTACCACCTGCTCTGTATTTCAAAACTTGCTTTAATTCAATGATTGGCCCTTTATTTGTATTGTGTCACTTAAAAGCAGAAGTCAGCAACTCCAGATTCTGATGTGCTTAAATAATAGGGATCAATCATGAGCTAGTTGTAGTGCTTTCAAAAAGGAAGCATTCAAAAACATCAGTTGACTCTTATGATGAATTCTGATATGGTTTTGATTAGGTGGTTAAGTAATTGATTTGATTGCATGACTATAACCTTATATTATACTTTTCAGTTGATTAAATTGTTTTAGGCTTATTTATGAAAAAAGTTAAATAGCTTTAACTTCCAACCTGCCAACATTTGCTGTATTTTCTGTACTGCATGAAAAAACAAACTGATTTAAGAATTGAGCTGAAGTTGTGTTTTGGGGATTTCTGCGAAATAATGGTGAATATCTGAACCTTCTTCCTGCTATGGATCACAGAAAATTTTGTTGAGGATTATATCAAGCAGAGTTTGCTCCCACTGACTTTGCCCATTACTGAAGAAACTCTGAGATTGCTGAAAGATGATGAGAGAAAAGTTATTCTAACAATTTTGGAAGATGAAACTGATGATAGGTCTAAGAAATTATTGAAGCTCCTGAAAGCTGCTGCATCTGCAAACCGCGACTTCGTGTTTGTTTTTGTTGGGTTCAAGCAATGGCAAGGGTTTGCTGAATCATTTGACGTTTCTAAGAAAACTAAGCTGCCAAAAATGGTTGTTTGGGATGGCGATGAGGAGTACTTTTCAGTAAGTTCATTTACTTCTTTTTCTCTCCCTTTCCAGTTCCCCGCTAGGGATTGCATATTTGTCGACCCTTATCAAGTGTAGGAAATATACTTTATAGTTTGGAGTCTGGACTTTTTTCTTGTCTAACACGGCTAAAATATAGTGCTTTCAACTTATCGACTGAAGTGAACGATGAACTTTTCATTTTTGCTTAGTGTTCTGACTAAAATAAACAGCAGGGATAAACTGTACTTAACCGTACTTATTAATTGGTATCATTTCACTGCATGACACTTAATTATGTTGTTTCTCCAAGTCTGTGAGATGCCTTTTGTGAATAATATCTACCAGTAATTTTCAGTGGTTTATTAGAAGAGAGAGACATTATTTATACATAATCTACTTCTAGGTGAAGTGTCTTTTGACTAAATCACTATAAATTTAACGTAATGATTACAATTTTTTACTCATGCAACAGGTTGTTGGCTCTGAGAGCGTTGAAGATGAAGATCAGGGGTCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATCATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGATAGGTTTGGGAACAGTGACCATCATAGTGTTTGTGGTTGCGGTGGTGATGATT</genome_strand>
        <mrna_strand>CCATTTTAGAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAATCTGCCATATCACATTTTGCAGTAAAATACAAGAAGAGAGCATGGTTTTCTGTGGCAAAAGATTTCTCGGATAAGACCATGGAATTCTATGATTTTGACAAGGTACCTGCTTTGGTAGCTCGTCATCCAAACTATGATGAACAAAGCATCTTCTATGGCCCCTTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTTTGTTGAGGATTATATCAAGCAGAGTTTGCTCCCACTGACTTTGCCCATTACTGAAGAAACTCTGAGATTGCTGAAAGATGATGAGAGAAAAGTTATTCTAACAATTTTGGAAGATGAAACTGATGATAGGTCTAAGAAATTATTGAAGCTCCTGAAAGCTGCTGCATCTGCAAACCGCGACTTCGTGTTTGTTTTTGTTGGGTTCAAGCAATGGCAAGGGTTTGCTGAATCATTTGACGTTTCTAAGAAAACTAAGCTGCCAAAAATGGTTGTTTGGGATGGCGATGAGGAGTACTTTTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGCTCTGAGAGCGTTGAAGATGAAGATCAGGGGTCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATCATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGATAGGTTTGGGAACAGTGACCATCATAGTGTTTGTGGGTTGCGTGGTGATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377791" ref_strand="+" ref_description="SGN-E377791 [TUS-21-N7]">
      <seq>aaactctgagattgctgaaagatgatgagagaaaagttattctaacaattttggaagatgaaactgatgataggtctaagaaattattgaagctcctgaaagctgctgcatctgcaaaccgcgacttcgtgtttgtttttgttgggttcaagcaatggcaagggtttgctgaatcatttgacgtttctaagaaaactaagctgccaaaaatggttgtttgggatggcgatgaggagtacttttcagttgttggctctgagagcgttgaagatgaagatcaggggtcccaaattacacattttattcaaggatacaaagacggaaatatcatacagaaacgtattagctctggttctttcatgggtttcataaactcaatgataggtttgggaacagtgaccatcatagtgtttgtggttgcggtggtgatgattatccagtctttgaaagaggaacccttaactgttggtacaagggacgagggagatcatccaagcagctccacctctcagacagaagccagacaaccacttcgttctggagagaaacaagacaaggaagattaagttttacaccagtcagacctcagatagttagcttgagaaatcctcgacaggaaaaccaaactacacgtaggtctaagagtgctgttaagtttcatcctcacaacgatcacagccccttgttttcttattaaagttatttgaacaacatactgtagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92317" stop="94095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92617" g_stop="92861" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92862" i_stop="93318" i_length="457">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93319" g_stop="93795" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="723" r_length="478" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E377791" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92617" e_stop="92861"/>
          <exon e_start="93319" e_stop="93795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTGAGATTGCTGAAAGATGATGAGAGAAAAGTTATTCTAACAATTTTGGAAGATGAAACTGATGATAGGTCTAAGAAATTATTGAAGCTCCTGAAAGCTGCTGCATCTGCAAACCGCGACTTCGTGTTTGTTTTTGTTGGGTTCAAGCAATGGCAAGGGTTTGCTGAATCATTTGACGTTTCTAAGAAAACTAAGCTGCCAAAAATGGTTGTTTGGGATGGCGATGAGGAGTACTTTTCAGTAAGTTCATTTACTTCTTTTTCTCTCCCTTTCCAGTTCCCCGCTAGGGATTGCATATTTGTCGACCCTTATCAAGTGTAGGAAATATACTTTATAGTTTGGAGTCTGGACTTTTTTCTTGTCTAACACGGCTAAAATATAGTGCTTTCAACTTATCGACTGAAGTGAACGATGAACTTTTCATTTTTGCTTAGTGTTCTGACTAAAATAAACAGCAGGGATAAACTGTACTTAACCGTACTTATTAATTGGTATCATTTCACTGCATGACACTTAATTATGTTGTTTCTCCAAGTCTGTGAGATGCCTTTTGTGAATAATATCTACCAGTAATTTTCAGTGGTTTATTAGAAGAGAGAGACATTATTTATACATAATCTACTTCTAGGTGAAGTGTCTTTTGACTAAATCACTATAAATTTAACGTAATGATTACAATTTTTTACTCATGCAACAGGTTGTTGGCTCTGAGAGCGTTGAAGATGAAGATCAGGGGTCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATCATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGATAGGTTTGGGAACAGTGACCATCATAGTGTTTGTGGTTGCGGTGGTGATGATTATCCAGTCTTTGAAAGAGGAACCCTTAACTGTTGGTACAAGGGACGAGGGAGATCATCCAAGCAGCTCCACCTCTCAGACAGAAGCCAGACAACCACTTCGTTCTGGAGAGAAACAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCACAG-CCCTTGTTTTCTTATTAAAGTTATTTGAACAACATACTGTAGGA</genome_strand>
        <mrna_strand>AAACTCTGAGATTGCTGAAAGATGATGAGAGAAAAGTTATTCTAACAATTTTGGAAGATGAAACTGATGATAGGTCTAAGAAATTATTGAAGCTCCTGAAAGCTGCTGCATCTGCAAACCGCGACTTCGTGTTTGTTTTTGTTGGGTTCAAGCAATGGCAAGGGTTTGCTGAATCATTTGACGTTTCTAAGAAAACTAAGCTGCCAAAAATGGTTGTTTGGGATGGCGATGAGGAGTACTTTTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGCTCTGAGAGCGTTGAAGATGAAGATCAGGGGTCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATCATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGATAGGTTTGGGAACAGTGACCATCATAGTGTTTGTGGTTGCGGTGGTGATGATTATCCAGTCTTTGAAAGAGGAACCCTTAACTGTTGGTACAAGGGACGAGGGAGATCATCCAAGCAGCTCCACCTCTCAGACAGAAGCCAGACAACCACTTCGTTCTGGAGAGAAACAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCACAGCCCCTTGTTTTCTTATTAAAGTTATTTGAACAACATACTGTAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235575" ref_strand="+" ref_description="SGN-E235575 [cLED-11-J22]">
      <seq>aaactctgagattgctgaaagatgatgagagaaaagttattctaacaattttggaagatgaaactgatgataggtctaagaaattattgaagctcctgaaagctgctgcatctgcaaaccgcgacttcgtgtttgtttttgttgggttcaagcaatggcaagggtttgctgaatcatttgacgtttctaagaaaactaagctgccaaaaatggttgtttgggatggcgatgaggagtacttttcagttgttggctctgagagcgttgaagatgaagatcaggggtcccaaattacacattttattcaaggatacaaagacggaaatatcatacagaaacgtattagctctggttctttcatgggtttcataaactcaatgataggtttgggaacagtgaccatcatagtgtttgtggttgcggtggtgatgattatccagtctttgaaagaggaacccttaactgttggtacaagggacgagggagatcatccaagcagctccacctctcagacagaagccagacaaccacttcgttctggagagaaacaagacaaggaagattaagttttacaccagtcagacctcagatagttagcttgagaaatcctcgacaggaaaaccaaactacacgtaggtctaagagtgctgttaagtttcatcctcacaacgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92317" stop="94048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92617" g_stop="92861" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92862" i_stop="93318" i_length="457">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93319" g_stop="93748" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="675" r_length="430" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E235575" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92617" e_stop="92861"/>
          <exon e_start="93319" e_stop="93748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTGAGATTGCTGAAAGATGATGAGAGAAAAGTTATTCTAACAATTTTGGAAGATGAAACTGATGATAGGTCTAAGAAATTATTGAAGCTCCTGAAAGCTGCTGCATCTGCAAACCGCGACTTCGTGTTTGTTTTTGTTGGGTTCAAGCAATGGCAAGGGTTTGCTGAATCATTTGACGTTTCTAAGAAAACTAAGCTGCCAAAAATGGTTGTTTGGGATGGCGATGAGGAGTACTTTTCAGTAAGTTCATTTACTTCTTTTTCTCTCCCTTTCCAGTTCCCCGCTAGGGATTGCATATTTGTCGACCCTTATCAAGTGTAGGAAATATACTTTATAGTTTGGAGTCTGGACTTTTTTCTTGTCTAACACGGCTAAAATATAGTGCTTTCAACTTATCGACTGAAGTGAACGATGAACTTTTCATTTTTGCTTAGTGTTCTGACTAAAATAAACAGCAGGGATAAACTGTACTTAACCGTACTTATTAATTGGTATCATTTCACTGCATGACACTTAATTATGTTGTTTCTCCAAGTCTGTGAGATGCCTTTTGTGAATAATATCTACCAGTAATTTTCAGTGGTTTATTAGAAGAGAGAGACATTATTTATACATAATCTACTTCTAGGTGAAGTGTCTTTTGACTAAATCACTATAAATTTAACGTAATGATTACAATTTTTTACTCATGCAACAGGTTGTTGGCTCTGAGAGCGTTGAAGATGAAGATCAGGGGTCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATCATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGATAGGTTTGGGAACAGTGACCATCATAGTGTTTGTGGTTGCGGTGGTGATGATTATCCAGTCTTTGAAAGAGGAACCCTTAACTGTTGGTACAAGGGACGAGGGAGATCATCCAAGCAGCTCCACCTCTCAGACAGAAGCCAGACAACCACTTCGTTCTGGAGAGAAACAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCA</genome_strand>
        <mrna_strand>AAACTCTGAGATTGCTGAAAGATGATGAGAGAAAAGTTATTCTAACAATTTTGGAAGATGAAACTGATGATAGGTCTAAGAAATTATTGAAGCTCCTGAAAGCTGCTGCATCTGCAAACCGCGACTTCGTGTTTGTTTTTGTTGGGTTCAAGCAATGGCAAGGGTTTGCTGAATCATTTGACGTTTCTAAGAAAACTAAGCTGCCAAAAATGGTTGTTTGGGATGGCGATGAGGAGTACTTTTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGCTCTGAGAGCGTTGAAGATGAAGATCAGGGGTCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATCATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGATAGGTTTGGGAACAGTGACCATCATAGTGTTTGTGGTTGCGGTGGTGATGATTATCCAGTCTTTGAAAGAGGAACCCTTAACTGTTGGTACAAGGGACGAGGGAGATCATCCAAGCAGCTCCACCTCTCAGACAGAAGCCAGACAACCACTTCGTTCTGGAGAGAAACAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390934" ref_strand="+" ref_description="SGN-E390934 [TUS-46-H6](-)">
      <seq>gaatcattgacggtttctaagaaaactaagctgccaaaaatggttgtttgggatggcgatgaggagtacttttcagttgttggctctgagagcgttgaagatgaagatcaggggtcccaaattacacattttattcaaggatacaaagacggaaatatcatacagaaacgtattagctctggttctttcatgggtttcataaactcaatgataggtttgggaacagtgaccatcatagtgtttgtggttgcggtggtgatgattatccagtctttgaaagaggaacccttaactgttggtacaagggacgagggagatcatccaagcagctccacctttcagacagaagccagacaaccacttcgttttggagagaaacaagacaaggaagattaagttttacaccagtcagacctcagatagttagcttgagaaatcctcgacaggaaaaccaaactacacgtaggtttaagagtgctgttaagtttcatcctcacaacgatcacagcccttgtttttttattaaagttatttgaacaacatactgtaggattactgtaaccagaagtgtggagggaagagtttgtgcttctatctgtgttattgaatttaacaaatgtggaggcaaatttaattttagcactgtataaaatgtgtttgaaacaatcttttttagctaatatcactgcttgtttgatgattaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92487" stop="94252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92787" g_stop="92861" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92862" i_stop="93318" i_length="457">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93319" g_stop="93946" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="703" r_length="628" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="704" polyA_stop="722"/>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E390934" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92787" e_stop="92861"/>
          <exon e_start="93319" e_stop="93946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCATTTGACGTTTCTAAGAAAACTAAGCTGCCAAAAATGGTTGTTTGGGATGGCGATGAGGAGTACTTTTCAGTAAGTTCATTTACTTCTTTTTCTCTCCCTTTCCAGTTCCCCGCTAGGGATTGCATATTTGTCGACCCTTATCAAGTGTAGGAAATATACTTTATAGTTTGGAGTCTGGACTTTTTTCTTGTCTAACACGGCTAAAATATAGTGCTTTCAACTTATCGACTGAAGTGAACGATGAACTTTTCATTTTTGCTTAGTGTTCTGACTAAAATAAACAGCAGGGATAAACTGTACTTAACCGTACTTATTAATTGGTATCATTTCACTGCATGACACTTAATTATGTTGTTTCTCCAAGTCTGTGAGATGCCTTTTGTGAATAATATCTACCAGTAATTTTCAGTGGTTTATTAGAAGAGAGAGACATTATTTATACATAATCTACTTCTAGGTGAAGTGTCTTTTGACTAAATCACTATAAATTTAACGTAATGATTACAATTTTTTACTCATGCAACAGGTTGTTGGCTCTGAGAGCGTTGAAGATGAAGATCAGGGGTCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATCATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGATAGGTTTGGGAACAGTGACCATCATAGTGTTTGTGGTTGCGGTGGTGATGATTATCCAGTCTTTGAAAGAGGAACCCTTAACTGTTGGTACAAGGGACGAGGGAGATCATCCAAGCAGCTCCACCTCTCAGACAGAAGCCAGACAACCACTTCGTTCTGGAGAGAAACAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCACAGCCCTTGTTTTCTTATTAAAGTTATTTGAACAACATACTGTAGGATTACTGTAACCAGAAGTGTGGAGGGAAGAGTTTGTGCTTCTATCTGTGTTATTGAATTTAACAAATGTGGAGGCAAATTTAATTTTAGCACTGTATAAAATGTGTTTGAAACAATCTTTTTTAGCTAATATCACTGCTTGTTTGATGATTA</genome_strand>
        <mrna_strand>GAATCATTGACGGTTTCTAAGAAAACTAAGCTGCCAAAAATGGTTGTTTGGGATGGCGATGAGGAGTACTTTTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGCTCTGAGAGCGTTGAAGATGAAGATCAGGGGTCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATCATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGATAGGTTTGGGAACAGTGACCATCATAGTGTTTGTGGTTGCGGTGGTGATGATTATCCAGTCTTTGAAAGAGGAACCCTTAACTGTTGGTACAAGGGACGAGGGAGATCATCCAAGCAGCTCCACCTTTCAGACAGAAGCCAGACAACCACTTCGTTTTGGAGAGAAACAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTTTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCACAGCCCTTGTTTTTTTATTAAAGTTATTTGAACAACATACTGTAGGATTACTGTAACCAGAAGTGTGGAGGGAAGAGTTTGTGCTTCTATCTGTGTTATTGAATTTAACAAATGTGGAGGCAAATTTAATTTTAGCACTGTATAAAATGTGTTTGAAACAATCTTTTTTAGCTAATATCACTGCTTGTTTGATGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620352" ref_strand="+" ref_description="SGN-E620352 [71052]">
      <seq>tagaagtttctaagaaaactaaactgccaaaaatggttgtttgggatggcgatgaggagtacttttcagttgttggcttggacagcattgaagatgaagatcaggggtcccaaattacacaattcattcaaggatacaaagacggaaatattatacagaaacgtattagctctggttctttcatgggtttcataaactcaatgatagggattggaacagtgaccatcatagtgtttgtggttgcggtggtgatgattatccagtctttgaaagaggaacccttaactgttggtacaagggacgagggagatcatccaagcagctccacctctcagaaggaagccagacaaccacttcattctggagagaaacacgacaaggaagattaagttttacaccagtcagacctcaaatagttagcttgagaaatcctcgacaggaaaaccaaactacatttaggtctaagagtgctgttaagtttcattcttaccacgatcacagcccttgttatcttatgaaagttacttgaacgacatacttgtaggattactgtaacctgaagtgtggtctgtgttattgaaattaacaatttgtatttacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92493" stop="94116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92794" g_stop="92861" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92862" i_stop="93318" i_length="457">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93319" g_stop="93812" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="563" r_length="495" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="599" polyA_stop="610"/>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E620352" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92794" e_stop="92861"/>
          <exon e_start="93319" e_stop="93812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACGTTTCTAAGAAAACTAAGCTGCCAAAAATGGTTGTTTGGGATGGCGATGAGGAGTACTTTTCAGTAAGTTCATTTACTTCTTTTTCTCTCCCTTTCCAGTTCCCCGCTAGGGATTGCATATTTGTCGACCCTTATCAAGTGTAGGAAATATACTTTATAGTTTGGAGTCTGGACTTTTTTCTTGTCTAACACGGCTAAAATATAGTGCTTTCAACTTATCGACTGAAGTGAACGATGAACTTTTCATTTTTGCTTAGTGTTCTGACTAAAATAAACAGCAGGGATAAACTGTACTTAACCGTACTTATTAATTGGTATCATTTCACTGCATGACACTTAATTATGTTGTTTCTCCAAGTCTGTGAGATGCCTTTTGTGAATAATATCTACCAGTAATTTTCAGTGGTTTATTAGAAGAGAGAGACATTATTTATACATAATCTACTTCTAGGTGAAGTGTCTTTTGACTAAATCACTATAAATTTAACGTAATGATTACAATTTTTTACTCATGCAACAGGTTGTTGGCTCTGAGAGCGTTGAAGATGAAGATCAGGGGTCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATCATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGATAGGTTTGGGAACAGTGACCATCATAGTGTTTGTGGTTGCGGTGGTGATGATTATCCAGTCTTTGAAAGAGGAACCCTTAACTGTTGGTACAAGGGACGAGGGAGATCATCCAAGCAGCTCCACCTCTCAGACAGAAGCCAGACAACCACTTCGTTCTGGAGAGAAACAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCACAGCCCTTGTTTTCTTATTAAAGTTATTTGAACAACATAC-TGTAGGATTACTGTAACCAGAAGT</genome_strand>
        <mrna_strand>TAGAAGTTTCTAAGAAAACTAAACTGCCAAAAATGGTTGTTTGGGATGGCGATGAGGAGTACTTTTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGCTTGGACAGCATTGAAGATGAAGATCAGGGGTCCCAAATTACACAATTCATTCAAGGATACAAAGACGGAAATATTATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGATAGGGATTGGAACAGTGACCATCATAGTGTTTGTGGTTGCGGTGGTGATGATTATCCAGTCTTTGAAAGAGGAACCCTTAACTGTTGGTACAAGGGACGAGGGAGATCATCCAAGCAGCTCCACCTCTCAGAAGGAAGCCAGACAACCACTTCATTCTGGAGAGAAACACGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAAATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACATTTAGGTCTAAGAGTGCTGTTAAGTTTCATTCTTACCACGATCACAGCCCTTGTTATCTTATGAAAGTTACTTGAACGACATACTTGTAGGATTACTGTAACCTGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373997" ref_strand="+" ref_description="SGN-E373997 [TUS-33-A9](-)">
      <seq>agtacttttcagttgttggctctgagagcgttgaagatgaagatcaggggtcccaaattacacattttattcaaggatacaaagacggaaatatcatacagaaacgtattagctctggttctttcatgggtttcataaactcaatgataggtttgggaacagtgaccatcatagtgtttgtggttgcggtggtgatgattatccagtctttgaaagaggaacccttaactgttggtacaagggacgagggagatcatccaagcagctccacctctcagacagaagccagacaaccacttcgttctggagagaaacaagacaaggaagattaagttttacaccagtcagacctcagatagttagcttgagaaatcctcgacaggaaaaccaaactacacgtaggtctaagagtgctgttaagtttcatcctcacaacgatcacagcccttgttttcttattaaagttatttgaacaacatactgtaggattactgtaaccaaaagtgtggagggaagagtttgtgcttctatttgtgttattgaatttaacaaatgtggaggcaaatttaattttagcactgtataaaatgtgtttgaaacaatcttttttagctaatatcactgcttgtttgataaataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93016" stop="94252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93319" g_stop="93946" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="639" r_length="628" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="640" polyA_stop="657"/>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E373997" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93319" e_stop="93946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTGGCTCTGAGAGCGTTGAAGATGAAGATCAGGGGTCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATCATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGATAGGTTTGGGAACAGTGACCATCATAGTGTTTGTGGTTGCGGTGGTGATGATTATCCAGTCTTTGAAAGAGGAACCCTTAACTGTTGGTACAAGGGACGAGGGAGATCATCCAAGCAGCTCCACCTCTCAGACAGAAGCCAGACAACCACTTCGTTCTGGAGAGAAACAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCACAGCCCTTGTTTTCTTATTAAAGTTATTTGAACAACATACTGTAGGATTACTGTAACCAGAAGTGTGGAGGGAAGAGTTTGTGCTTCTATCTGTGTTATTGAATTTAACAAATGTGGAGGCAAATTTAATTTTAGCACTGTATAAAATGTGTTTGAAACAATCTTTTTTAGCTAATATCACTGCTTGTTTGATGATTA</genome_strand>
        <mrna_strand>GTTGTTGGCTCTGAGAGCGTTGAAGATGAAGATCAGGGGTCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATCATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGATAGGTTTGGGAACAGTGACCATCATAGTGTTTGTGGTTGCGGTGGTGATGATTATCCAGTCTTTGAAAGAGGAACCCTTAACTGTTGGTACAAGGGACGAGGGAGATCATCCAAGCAGCTCCACCTCTCAGACAGAAGCCAGACAACCACTTCGTTCTGGAGAGAAACAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCACAGCCCTTGTTTTCTTATTAAAGTTATTTGAACAACATACTGTAGGATTACTGTAACCAAAAGTGTGGAGGGAAGAGTTTGTGCTTCTATTTGTGTTATTGAATTTAACAAATGTGGAGGCAAATTTAATTTTAGCACTGTATAAAATGTGTTTGAAACAATCTTTTTTAGCTAATATCACTGCTTGTTTGATAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263743" ref_strand="-" ref_description="SGN-E263743 [cLEG-60-H1]">
      <seq>cagggttcccaaattacactttttattcagggatccaaggccggaaatatcatccagaaccgtattagttctggttctttcaggggtttcataaactcaatgataggtttgggaccagtgcccatcatagtgtttgtggttgcggtggtaatgattatccattcttggaaagaggaccccttacctgttggtccaagggaggagggagttcttccaagcagctccccttctcagacagaagccagacaaccatttcgttttggagagaaccaagccaaggaagattaagttttcccccagtcagccttcagatagttagcttgagaaatcctcgccaggaaaaccaaactacacgtaggtctaagagtgctgttaagtttcatcctcacaacgatcacagcccttgttttcttattaaagttatttgaacaacatactgtaggattactgtaaccagaagtgtggagggaagagtttgtgcttctatctgtgttattgaatttaacaaatgtggaggcaaatttaattttagcactgtataaaatgtgtttgaaacaaaaaaaaaaaaaaaaaaccgagactgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93052" stop="94209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93352" g_stop="93908" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="558" polyA_stop="575"/>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E263743" ref_strand="-">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263743" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93352" e_stop="93908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGGTCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATCATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGATAGGTTTGGGAACAGTGACCATCATAGTGTTTGTGGTTGCGGTGGTGATGATTATCCAGTCTTTGAAAGAGGAACCCTTAACTGTTGGTACAAGGGACGAGGGAGATCATCCAAGCAGCTCCACCTCTCAGACAGAAGCCAGACAACCACTTCGTTCTGGAGAGAAACAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCACAGCCCTTGTTTTCTTATTAAAGTTATTTGAACAACATACTGTAGGATTACTGTAACCAGAAGTGTGGAGGGAAGAGTTTGTGCTTCTATCTGTGTTATTGAATTTAACAAATGTGGAGGCAAATTTAATTTTAGCACTGTATAAAATGTGTTTGAAACA</genome_strand>
        <mrna_strand>CAGGGTTCCCAAATTACACTTTTTATTCAGGGATCCAAGGCCGGAAATATCATCCAGAACCGTATTAGTTCTGGTTCTTTCAGGGGTTTCATAAACTCAATGATAGGTTTGGGACCAGTGCCCATCATAGTGTTTGTGGTTGCGGTGGTAATGATTATCCATTCTTGGAAAGAGGACCCCTTACCTGTTGGTCCAAGGGAGGAGGGAGTTCTTCCAAGCAGCTCCCCTTCTCAGACAGAAGCCAGACAACCATTTCGTTTTGGAGAGAACCAAGCCAAGGAAGATTAAGTTTTCCCCCAGTCAGCCTTCAGATAGTTAGCTTGAGAAATCCTCGCCAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCACAGCCCTTGTTTTCTTATTAAAGTTATTTGAACAACATACTGTAGGATTACTGTAACCAGAAGTGTGGAGGGAAGAGTTTGTGCTTCTATCTGTGTTATTGAATTTAACAAATGTGGAGGCAAATTTAATTTTAGCACTGTATAAAATGTGTTTGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226125" ref_strand="+" ref_description="SGN-E226125 [cLEL-31-G5](-)">
      <seq>tcccaaattacacattttattcaaggatacaaagacggaaatatcaatacagaaacgtattagctctggttctttcatgggtttcataaactcaatgataggtttgggaacagtgaccatcatagtgtttgtggttgcggtggtgatgattatccagtctttgaaagaggaacccttaactgttggtacaagggacgagggagatcatccaagcagctccacctctcagacagaagccagacaaccacttcgttctggagagaaacaagacaaggaagattaagttttacaccagtcagacctcagatagttagcttgagaaatcctcgacaggaaaaccaaactacacgtaggtctaagagtgctgttaagtttcatcctcacaacgatcacagcccttgttttcttattaaagttatttgaacaacatactgtaggattactgtaaccagaagtgtggagggaagagtttgtgcttctatctgtgttattaaatttaacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93058" stop="94160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93358" g_stop="93864" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E226125" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93358" e_stop="93864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATC-ATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGATAGGTTTGGGAACAGTGACCATCATAGTGTTTGTGGTTGCGGTGGTGATGATTATCCAGTCTTTGAAAGAGGAACCCTTAACTGTTGGTACAAGGGACGAGGGAGATCATCCAAGCAGCTCCACCTCTCAGACAGAAGCCAGACAACCACTTCGTTCTGGAGAGAAACAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCACAGCCCTTGTTTTCTTATTAAAGTTATTTGAACAACATACTGTAGGATTACTGTAACCAGAAGTGTGGAGGGAAGAGTTTGTGCTTCTATCTGTGTTATTGAATTTAACAAATGTG</genome_strand>
        <mrna_strand>TCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATCAATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGATAGGTTTGGGAACAGTGACCATCATAGTGTTTGTGGTTGCGGTGGTGATGATTATCCAGTCTTTGAAAGAGGAACCCTTAACTGTTGGTACAAGGGACGAGGGAGATCATCCAAGCAGCTCCACCTCTCAGACAGAAGCCAGACAACCACTTCGTTCTGGAGAGAAACAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCACAGCCCTTGTTTTCTTATTAAAGTTATTTGAACAACATACTGTAGGATTACTGTAACCAGAAGTGTGGAGGGAAGAGTTTGTGCTTCTATCTGTGTTATTAAATTTAACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226029" ref_strand="+" ref_description="SGN-E226029 [cLEL-31-G5](-)">
      <seq>gtgtttgtggttgcggtggtgatgattatccagtctttgaaaaaggaacccttaactgttggtacaagggacgagggagatcatccaagcagctccacctctcagacagaagccagacaaccacttcgttctggagagaaacaagacaaggaagattaagttttacaccagtcagacctcagatagttagcttgagaaatcctcgacaggaaaaccaaactacacgtaggtctaagagtgctgttaagtttcatcctcacaacgatcacagcccttgttttcttattaaagttatttgaacaacatactgtaggattactgtaaccagaagtgtggagggaagagtttgtgcttctatctgtgttattgaatttaacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93181" stop="94160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93481" g_stop="93864" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E226029" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93481" e_stop="93864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTTGTGGTTGCGGTGGTGATGATTATCCAGTCTTTGAAAGAGGAACCCTTAACTGTTGGTACAAGGGACGAGGGAGATCATCCAAGCAGCTCCACCTCTCAGACAGAAGCCAGACAACCACTTCGTTCTGGAGAGAAACAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCACAGCCCTTGTTTTCTTATTAAAGTTATTTGAACAACATACTGTAGGATTACTGTAACCAGAAGTGTGGAGGGAAGAGTTTGTGCTTCTATCTGTGTTATTGAATTTAACAAATGTG</genome_strand>
        <mrna_strand>GTGTTTGTGGTTGCGGTGGTGATGATTATCCAGTCTTTGAAAAAGGAACCCTTAACTGTTGGTACAAGGGACGAGGGAGATCATCCAAGCAGCTCCACCTCTCAGACAGAAGCCAGACAACCACTTCGTTCTGGAGAGAAACAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCACAGCCCTTGTTTTCTTATTAAAGTTATTTGAACAACATACTGTAGGATTACTGTAACCAGAAGTGTGGAGGGAAGAGTTTGTGCTTCTATCTGTGTTATTGAATTTAACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262080" ref_strand="-" ref_description="SGN-E262080 [cLEG-58-E21]">
      <seq>agggagatcatccaagcagctccccttctcagacagaagccagacaaccacttcgttctggagagaaccaagacaaggaagattaagttttacaccagtcagacctcagatagttagcttgagaaatcctcgacaggaaaaccaaactacacgtaggtctaagagtgctgttaagtttcatcctcacaacgatcacagcccttgttttcttattaaagttatttgaacaacatactgtaggattactgtaaccagaagtgtggagggaagagtttgtgcttctatctgtgttattgaatttaacaaatgtggaggcaaatttaattttagcactgtataaaatgtgtttgaaacaaaaaaaaaaaaaaaaanccgagact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="+" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93254" stop="94209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93554" g_stop="93908" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="356" polyA_stop="372"/>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="+" ref_id="SGN-E262080" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262080" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93554" e_stop="93908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGAGATCATCCAAGCAGCTCCACCTCTCAGACAGAAGCCAGACAACCACTTCGTTCTGGAGAGAAACAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCACAGCCCTTGTTTTCTTATTAAAGTTATTTGAACAACATACTGTAGGATTACTGTAACCAGAAGTGTGGAGGGAAGAGTTTGTGCTTCTATCTGTGTTATTGAATTTAACAAATGTGGAGGCAAATTTAATTTTAGCACTGTATAAAATGTGTTTGAAACA</genome_strand>
        <mrna_strand>AGGGAGATCATCCAAGCAGCTCCCCTTCTCAGACAGAAGCCAGACAACCACTTCGTTCTGGAGAGAACCAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCACAGCCCTTGTTTTCTTATTAAAGTTATTTGAACAACATACTGTAGGATTACTGTAACCAGAAGTGTGGAGGGAAGAGTTTGTGCTTCTATCTGTGTTATTGAATTTAACAAATGTGGAGGCAAATTTAATTTTAGCACTGTATAAAATGTGTTTGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376879" ref_strand="+" ref_description="SGN-E376879 [TUS-19-F9](-)">
      <seq>taatttcatccaactcattgggttatccttgtttatcacctcttaattcaagatatgggtctgcatacattcctagtcctagcaatccctcgtcgagctatatgggatcaacaagtcggcagcctaacccactgcatcacagtgaatcaattacaagcttttcaccatttgcttcagctaactctcttcctggatgtgagtcgtgatttaattgatcatggcaaacattaatcaaattgttgaagtcccttgcagggaactcaggttgggttattctgacctcaaattcacgtgaagacaatagagctgattcgtgttggttgctttgacatctggacggaggaatacaacagctagcttcattgctcaacacttctgggatattggtttagtagttgataggtttgataattttgagttttttacagagtgtacattcttaaagatgggtgtattactgtacgcattgcgccttcttttgtttattgctttttttttcttcttaccctcgatttctctataatagtgatgtttttagccatgtccacctgacagatggttgaggcctgtagtttgcatgtaaatatgaatgcccttgaggtgactaaatctagtcttttacttgttttagtttttgaatatccactgatttccaaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="-" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95072" stop="93813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94772" g_stop="94103" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="-" ref_id="SGN-E376879" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94772" e_stop="94103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTCATCCAACTCATTGGGTTATCCTTGTTTATCACCTCTTAATTCAAGATATGGGTCTGCATACATTCCTAGTCCTAGCAATCCCTCGTCGAGCTATATGGGATCAACAAGTCGGCAGCCTAACCCACTGCATCACAGTGAATCAATTACAAGCTTTTCACCATTTGCTTCAGCTAACTCTCTTCCTGGATGTGAGTCGTGATTTAATTGATCATGGCAAACATTAATCAAATTGTTGAAGTCCCTTGCAGGGAACTCAGGTTGGGTTATTCTGACCTCAAATTCACGTGAAGACAATAGAGCTGATTCGTGTTGGTTGCTTTGACATCTGGACGGAGGAATACAACAGCTAGCTTCATTGCTCAACACTTCTGGGATATTGGTTTAGTAGTTGATAGGTTTGATAATTTTGAGTTTTTTACAGAGTGTACATTCTTAAAGATGGGTGTATTACTGTACGCATTGCGCCTTCTTTTGTTTATTGCTTTTTTTTTTCTTCTTACCCTCGATTTCTCTATAATAGTGATGTTTTTAGCCATGTCCACCTGACAGATGGTTGAGGCCTGTAGTTTGCATGTAAATATGAATGCCCTTGAGGTGACTAAATCTAGTCTTTTACTTGTTTTAGTTTTTGAATATCCACTGATTTCCAAATATTGCATATCT</genome_strand>
        <mrna_strand>TAATTTCATCCAACTCATTGGGTTATCCTTGTTTATCACCTCTTAATTCAAGATATGGGTCTGCATACATTCCTAGTCCTAGCAATCCCTCGTCGAGCTATATGGGATCAACAAGTCGGCAGCCTAACCCACTGCATCACAGTGAATCAATTACAAGCTTTTCACCATTTGCTTCAGCTAACTCTCTTCCTGGATGTGAGTCGTGATTTAATTGATCATGGCAAACATTAATCAAATTGTTGAAGTCCCTTGCAGGGAACTCAGGTTGGGTTATTCTGACCTCAAATTCACGTGAAGACAATAGAGCTGATTCGTGTTGGTTGCTTTGACATCTGGACGGAGGAATACAACAGCTAGCTTCATTGCTCAACACTTCTGGGATATTGGTTTAGTAGTTGATAGGTTTGATAATTTTGAGTTTTTTACAGAGTGTACATTCTTAAAGATGGGTGTATTACTGTACGCATTGCGCCTTCTTTTGTTTATTGC-TTTTTTTTTCTTCTTACCCTCGATTTCTCTATAATAGTGATGTTTTTAGCCATGTCCACCTGACAGATGGTTGAGGCCTGTAGTTTGCATGTAAATATGAATGCCCTTGAGGTGACTAAATCTAGTCTTTTACTTGTTTTAGTTTTTGAATATCCACTGATTTCCAAATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E431330" ref_strand="-" ref_description="SGN-E431330 [STM-55-E2]">
      <seq>atcatagtgaatcaattacaagcttttcaccatttgcttcagctaactctcttcctggatgtgggttgtgatttaattgatcatggcaaacattaatcaaattgttgaagtcccttacagggacctcaggtcgggttattctgacctcaaatttcacctgaagacaatagagctgattcgtgttggttgctgtgacatctggacagaggaatacaacagctagcttcattgcttaacacttctgtgatattggtttagtagttgataagtttgatatttttgaggttcttaccgagtgtacattcttaaagatgggtgtcttactgtacgcattgcgccttcttttgtttattgctttttctttttcttaccgtcgattctctagtgatagtgatgtttttagccatgtccacctgatagatggttgaggcctgtagttgcatgtaaatatgaatgtccttgaggtgactaaatctagtcgtttacttgttttagtttttgaaatatccactgatttcaaaaaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="-" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94937" stop="93813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94637" g_stop="94116" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="522" polyA_stop="544"/>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="-" ref_id="SGN-E431330" ref_strand="-">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E431330" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="94637" e_stop="94116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACAGTGAATCAATTACAAGCTTTTCACCATTTGCTTCAGCTAACTCTCTTCCTGGATGTGAGTCGTGATTTAATTGATCATGGCAAACATTAATCAAATTGTTGAAGTCCCTTGCAGGGAACTCAGGTTGGGTTATTCTGACCTCAAA-TTCACGTGAAGACAATAGAGCTGATTCGTGTTGGTTGCTTTGACATCTGGACGGAGGAATACAACAGCTAGCTTCATTGCTCAACACTTCTGGGATATTGGTTTAGTAGTTGATAGGTTTGATAATTTTGAGTTTTTTACAGAGTGTACATTCTTAAAGATGGGTGTATTACTGTACGCATTGCGCCTTCTTTTGTTTATTGCTTTTTTTTTTCTTCTTACCCTCGATTTCTCTA-TAATAGTGATGTTTTTAGCCATGTCCACCTGACAGATGGTTGAGGCCTGTAGTTTGCATGTAAATATGAATGCCCTTGAGGTGACTAAATCTAGTCTTTTACTTGTTTTAGTTTTTG-AATATCCACTGATTTCCAA</genome_strand>
        <mrna_strand>ATCATAGTGAATCAATTACAAGCTTTTCACCATTTGCTTCAGCTAACTCTCTTCCTGGATGTGGGTTGTGATTTAATTGATCATGGCAAACATTAATCAAATTGTTGAAGTCCCTTACAGGGACCTCAGGTCGGGTTATTCTGACCTCAAATTTCACCTGAAGACAATAGAGCTGATTCGTGTTGGTTGCTGTGACATCTGGACAGAGGAATACAACAGCTAGCTTCATTGCTTAACACTTCTGTGATATTGGTTTAGTAGTTGATAAGTTTGATATTTTTGAGGTTCTTACCGAGTGTACATTCTTAAAGATGGGTGTCTTACTGTACGCATTGCGCCTTCTTTTGTTTATTGC-TTTTTCTTT-TTCTTACCGTCGA-TTCTCTAGTGATAGTGATGTTTTTAGCCATGTCCACCTGATAGATGGTTGAGGCCTGTAG-TTGCATGTAAATATGAATGTCCTTGAGGTGACTAAATCTAGTCGTTTACTTGTTTTAGTTTTTGAAATATCCACTGATTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261793" ref_strand="+" ref_description="SGN-E261793 [cLEG-61-I23]">
      <seq>tagtggatatggagatataattgcaatggcaggaacctctgctggtgtgaagatactggcagttttcatttcaaaagcttctggagaagcactcacacagtatgctggctcggatacggaagtatggttaatcccaagcttggaaaactcagcttggtcaatcatggctacatctttcatttcactactttctatgtctgctgtacttgcaatgtgtttctttgttcgccgacatcatatacgaagagaacggccacgagcttctcgtgttcgcgaatttcatgggattagtagccgtttggttaaagctatgccaagtttgatatttacgtcagttgtggaggataattctacatcagtgacatgtgctatatgccttgaagattatactgctggagataagcttagaattcttccatgccggcacaggaactcaggttgggttattctgacctcaaattcacgtgaagacaatagagctgattcgtgttggttgctttgacatctggacggaggaatacaacagctagcttcattgctcaacacttctgggatattggtttagtagttgataggtttgataattttgagttttttacagagtgtacttcttaaagatgggtgtattactgtacgcattgcgccttcttttgtttatttggctttttttttcttcttaccctcgatttctctaataatagtgatgtttttagccatgtccacctgacagaatggtgaggcctgtagtttgcatgtaaatatgaatgccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="-" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98544" stop="93875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98244" g_stop="98219" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98218" i_stop="96604" i_length="1615">
            <donor d_prob="0.865" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96603" g_stop="96202" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="428" r_length="402" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96201" i_stop="94518" i_length="1684">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94517" g_stop="94175" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="772" r_length="344" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="-" ref_id="SGN-E261793" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98244" e_stop="98219"/>
          <exon e_start="96603" e_stop="96202"/>
          <exon e_start="94517" e_stop="94175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGGATATGGAGATATAATTGCAAGTAATGAACTCTTCCATTGTACAGTTTCTATATTTATTTCACTTGCTCAAAAAAATTAAGTTTTCTTTCTTTCTTTCAATTATTCATTTAGTTCGTTCTAACTTATATTATGTTTGATGGTAGTTAACGTATCAAGTGGTATAACCTGAAATCATATCTTGAGGACGCACTAAAGTGCCCATGGTATCATCATGAACTTGCAAACAGAAACTGTAAAAGCCTAGGAATATACATGCCCAATTGAGATGGGATATGATTACATCACAATTGCATAAGGACACTATCTAATAGATCGTTGTGAGTAGTTGAATCATAATCTTTAGCGTAAACATGGCTGCATGTGCAGCATTCTTGAACTCTCTGATTGCAAGTTTTAGAATAAGGTTGAATATATTTCTGATATTAATCATTTAAGTATCAATAGTTCTACTAACTGATTTTAGATCTGGAAAAATAAGAAAATTAGTCTGCAAAATAGTTTTGACAAAAGCTTTTATTCGTATCTATCTTACTGGCAAAATGACTTCTTGAACTATTGCAAGGGAAATCTCTTGCAGATAGCTGTCACACTCTCTCAGCTGATAATAGTTTTGATTCATTGGGGTAGAAGTAAAATAATTCCTTCAAAATAGATATTTCTGGTACTATTTGTTCCTTTTTATTTTATTAGGTAAAGAAATAAGCGGTCGGATTAACAAGATTTTTTTCTTGTTCTTTTTGTACTGTTAAGGTGATTAGTTAAAATTGACATTGAACTCTTTACTCCTTGCACAAGCCAGCTATCCAACATTCTGCAATTTTGACGCAAACCTGCTGGTTTGCTTTTAATCTCCTAATGCTCTGTTTATCCCATATAAAATGTTGATGAAACTTCTGAACTGTCAATTGATCAACCCAACTATGCTTCCTTCTCTAACTAGTTATTCATGAAGACTGATAGGACGACATATAAAAGGGTTAATTGGATGTTCAATCTGGTGAAGAGAAATTGATCCATGTTTGTCTTCTTTGATTGGCTTGAGCCAGCATGATCCAACAATGGTGCATCTGAAATGTTCATATCAGAAAACTGACAAACTAGCAGAGCAGTTTATTACATAGGAGCGGGGGTTTTACCCTGTGCGCACCCACAGGGTAGCGGCCGTGGGTTTGCCTAGTCATAACAAAGAAAACTAGCAGATTAGTTTTGCCTACCCCCTTCCACTAGGAAAATGAAAGGAATTAGGCACAATTTCCCCCCTAGACTATGACCGAAGTCCTAGAGACACACCTAAACTTAACTAGGGTCCTATTTACCCCCAGCACTCAGTTGTTCCGTGTTTTTGTGCACCTTTTGTGCTGATAACTCATAAAACTTTTGTCAGACTTCAAAAACCATCTTCATCTCTTGCTTTTGAATGATTTATAATTGTTGATTTTTGAGTTAAGTTACCAAATTAAAAAATTGTTGATTTTGAGCAAGTAGCTTCACCTCTTCAAAAATAGTTCCGGGTGCATGTCGGATCCTCCAAAAGTAATGCATTTTTAGAGGATCCGACATGGGTGCGATAGTATCTTGAAGAGTCTGATCATCGTTATTTTGACAAGCAAAGGTTTGATCAGACACATGATACAGTGGCAGGAACCTCTGCTGGTGTGAAGATACTGGCAGTTTTCATTTCAAAAGCTTCTGGAGAAGCACTCACACAGTATGCTGGCTCGGATACGGAAGTATGGTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACAGTAAGTTATCCTCATTCTCTCTTTGATTTTTGGTACCATGCCAGACTAATCAGTGATCATGGTTGATAAGCACTAATGTATCCCCTTTAAACATGAAACAATTTTAGTGTCACCACTAAGGAAACTTGACTTGTCTCCCACCAAAAGCTTATGGTAGTTTGACCTTACTGAAAATGCACCCAGCACCATCACTTCTTGCCACCCCACCTCTGTGGGTTCCTACTGGTGAGTGTGGTATTCTGTTTGTAAGGCGTTTCCATCAGCCTTTGCAATTCATCCATCTCTCAATCTTGTAAATTCCAGACAATAAATTCCCCCCTTTCGCGTCACCCTAATCTGTTGTACCATCGCCTCTTTCTAGCATGAAACTCTGAATAACTTGGGAGAGGTTGTCCTCCTATACTTCTATGCACCTATGTTGGTCCCAAAAGTTGACTCTACTTCCATTCCCTACTTCATAGGTAACTAAGCCATTGAAATCTAGCTAACCTTTGATAATGCTTTTCTAGACCTCCATTTCCCTTCTACGACTCCATGTTTTCGTGCTATACCTCCCTCCACAATGCGTGCTCTTCAACCCCAAATCTCCATAACTACTTCCCAGTAGTGCCTTGTTCAAAACTCTTAAGTTCTGTTGTTCCAGGGATATGAGGAAGATTCCAACTACTAATTCTTGGTCTCCGTTTACCGAGTCCCCCAAGCCTGTCATCATAGTTGTTTAGCTCCAACTTTGTATCATGATGTAGAGAAGATCATTCATCGCTGTATGCATATTCTTCTACCATCTTGACTTTTGCCCTTTCTAAAGTAGCAGAACAGTTATAAATACAGTTCATACCTGATTTTTGAAATTATTTCATTTTCTGAAGTCTCCTTGGGGGTGAACTATGTGAAAACTAGAATTTATGGTTCCAAGTATCATATTATTGGAATATTTCCCTTGTCCCCAGTTGCTCTAATGCTGTATTTGTTGATACATTTCATAGATGTATGTGCACATTCAGAATTTATTTCTGCTGGAGCACTTGGCCTTTTTCAGTTATTAACTTGTCTTATGGGAACTTCACAGAATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATCTATCTCTAGCTCTCGTAACCAGCATTCACTTTGGTCTTACCAGTCACCACATCTTGCTATAAGCCGGAGTTCACTGGACCTTCAAAATGCATCTTCTCAAAGATCTCGTGCAGCTTACTTAATTTCATCCAACTCATTGGGTTATCCTTGTTTATCACCTCTTAATTCAAGATATGGGTCTGCATACATTCCTAGTCCTAGCAATCCCTCGTCGAGCTATATGGGATCAACAAGTCGGCAGCCTAACCCACTGCATCACAGTGAATCAATTACAAGCTTTTCACCATTTGCTTCAGCTAACTCTCTTCCTGGATGTGAGTCGTGATTTAATTGATCATGGCAAACATTAATCAAATTGTTGAAGTCCCTTGCAGGGAACTCAGGTTGGGTTATTCTGACCTCAAATTCACGTGAAGACAATAGAGCTGATTCGTGTTGGTTGCTTTGACATCTGGACGGAGGAATACAACAGCTAGCTTCATTGCTCAACACTTCTGGGATATTGGTTTAGTAGTTGATAGGTTTGATAATTTTGAGTTTTTTACAGAGTGTACATTCTTAAAGATGGGTGTATTACTGTACGCATTGCGCCTTCTTTTGTTTA-TTGCTTTTTTTTTTCTTCTTACCCTCGATTTCTCT-ATAATAGTGATGTTTTTAGCCATGTCCACCTGACAGATGGTTGAGGCCTGTAGTTTGCATGTAAATATGAATGCCCTT</genome_strand>
        <mrna_strand>TAGTGGATATGGAGATATAATTGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGGAACCTCTGCTGGTGTGAAGATACTGGCAGTTTTCATTTCAAAAGCTTCTGGAGAAGCACTCACACAGTATGCTGGCTCGGATACGGAAGTATGGTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACTCAGGTTGGGTTATTCTGACCTCAAATTCACGTGAAGACAATAGAGCTGATTCGTGTTGGTTGCTTTGACATCTGGACGGAGGAATACAACAGCTAGCTTCATTGCTCAACACTTCTGGGATATTGGTTTAGTAGTTGATAGGTTTGATAATTTTGAGTTTTTTACAGAGTGTAC-TTCTTAAAGATGGGTGTATTACTGTACGCATTGCGCCTTCTTTTGTTTATTTGGCTTTTTTTTTCTTCTTACCCTCGATTTCTCTAATAATAGTGATGTTTTTAGCCATGTCCACCTGACAGAATGGTGAGGCCTGTAGTTTGCATGTAAATATGAATGCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263235" ref_strand="+" ref_description="SGN-E263235 [cLEG-62-F22]">
      <seq>gatagtggatatggagatataattgcaatggcaggaacctctgctggtgtgaagatactggcagttttcatttcaaaagcttctggagaagcactcacacagtatgctggctcggatacggaagtatggttaatcccaagcttggaaaactcagcttggtcaatcatggctacatctttcatttcactactttctatgtctgctgtacttgcaatgtgtttctttgttcgccgacatcatatacgaagagaacggccacgagcttctcgtgttcgcgaatttcatgggattagtagccgtttggttaaagctatgccaagtttgatatttacgtcagttgtggaggataattctacatcagtgacatgtgctatatgccttgaagattatactgctggagataagcttagaattcttccatgccggcacaggaactcaggttgggttattctgacctcaaattcacgtgaagacaatagagctgattcgtgttggttgctttgacatctggacggaggaatacaacagctagcttcattgctcaacacttctgggatattggtttagtagttgataggtttgataattttgagttttttacagagtgtacattcttaaagatgggtgtattactgtacgcattgcgccttcttttgtttattgcttttttttttcttcttaccctcgatttctctataatagtgatgtttttagccatgtccacctgacagatggttgaggcctgtagtttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="-" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98546" stop="93894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98246" g_stop="98219" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98218" i_stop="96604" i_length="1615">
            <donor d_prob="0.865" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96603" g_stop="96202" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="430" r_length="402" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96201" i_stop="94518" i_length="1684">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94517" g_stop="94194" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="754" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="-" ref_id="SGN-E263235" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98246" e_stop="98219"/>
          <exon e_start="96603" e_stop="96202"/>
          <exon e_start="94517" e_stop="94194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTGGATATGGAGATATAATTGCAAGTAATGAACTCTTCCATTGTACAGTTTCTATATTTATTTCACTTGCTCAAAAAAATTAAGTTTTCTTTCTTTCTTTCAATTATTCATTTAGTTCGTTCTAACTTATATTATGTTTGATGGTAGTTAACGTATCAAGTGGTATAACCTGAAATCATATCTTGAGGACGCACTAAAGTGCCCATGGTATCATCATGAACTTGCAAACAGAAACTGTAAAAGCCTAGGAATATACATGCCCAATTGAGATGGGATATGATTACATCACAATTGCATAAGGACACTATCTAATAGATCGTTGTGAGTAGTTGAATCATAATCTTTAGCGTAAACATGGCTGCATGTGCAGCATTCTTGAACTCTCTGATTGCAAGTTTTAGAATAAGGTTGAATATATTTCTGATATTAATCATTTAAGTATCAATAGTTCTACTAACTGATTTTAGATCTGGAAAAATAAGAAAATTAGTCTGCAAAATAGTTTTGACAAAAGCTTTTATTCGTATCTATCTTACTGGCAAAATGACTTCTTGAACTATTGCAAGGGAAATCTCTTGCAGATAGCTGTCACACTCTCTCAGCTGATAATAGTTTTGATTCATTGGGGTAGAAGTAAAATAATTCCTTCAAAATAGATATTTCTGGTACTATTTGTTCCTTTTTATTTTATTAGGTAAAGAAATAAGCGGTCGGATTAACAAGATTTTTTTCTTGTTCTTTTTGTACTGTTAAGGTGATTAGTTAAAATTGACATTGAACTCTTTACTCCTTGCACAAGCCAGCTATCCAACATTCTGCAATTTTGACGCAAACCTGCTGGTTTGCTTTTAATCTCCTAATGCTCTGTTTATCCCATATAAAATGTTGATGAAACTTCTGAACTGTCAATTGATCAACCCAACTATGCTTCCTTCTCTAACTAGTTATTCATGAAGACTGATAGGACGACATATAAAAGGGTTAATTGGATGTTCAATCTGGTGAAGAGAAATTGATCCATGTTTGTCTTCTTTGATTGGCTTGAGCCAGCATGATCCAACAATGGTGCATCTGAAATGTTCATATCAGAAAACTGACAAACTAGCAGAGCAGTTTATTACATAGGAGCGGGGGTTTTACCCTGTGCGCACCCACAGGGTAGCGGCCGTGGGTTTGCCTAGTCATAACAAAGAAAACTAGCAGATTAGTTTTGCCTACCCCCTTCCACTAGGAAAATGAAAGGAATTAGGCACAATTTCCCCCCTAGACTATGACCGAAGTCCTAGAGACACACCTAAACTTAACTAGGGTCCTATTTACCCCCAGCACTCAGTTGTTCCGTGTTTTTGTGCACCTTTTGTGCTGATAACTCATAAAACTTTTGTCAGACTTCAAAAACCATCTTCATCTCTTGCTTTTGAATGATTTATAATTGTTGATTTTTGAGTTAAGTTACCAAATTAAAAAATTGTTGATTTTGAGCAAGTAGCTTCACCTCTTCAAAAATAGTTCCGGGTGCATGTCGGATCCTCCAAAAGTAATGCATTTTTAGAGGATCCGACATGGGTGCGATAGTATCTTGAAGAGTCTGATCATCGTTATTTTGACAAGCAAAGGTTTGATCAGACACATGATACAGTGGCAGGAACCTCTGCTGGTGTGAAGATACTGGCAGTTTTCATTTCAAAAGCTTCTGGAGAAGCACTCACACAGTATGCTGGCTCGGATACGGAAGTATGGTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACAGTAAGTTATCCTCATTCTCTCTTTGATTTTTGGTACCATGCCAGACTAATCAGTGATCATGGTTGATAAGCACTAATGTATCCCCTTTAAACATGAAACAATTTTAGTGTCACCACTAAGGAAACTTGACTTGTCTCCCACCAAAAGCTTATGGTAGTTTGACCTTACTGAAAATGCACCCAGCACCATCACTTCTTGCCACCCCACCTCTGTGGGTTCCTACTGGTGAGTGTGGTATTCTGTTTGTAAGGCGTTTCCATCAGCCTTTGCAATTCATCCATCTCTCAATCTTGTAAATTCCAGACAATAAATTCCCCCCTTTCGCGTCACCCTAATCTGTTGTACCATCGCCTCTTTCTAGCATGAAACTCTGAATAACTTGGGAGAGGTTGTCCTCCTATACTTCTATGCACCTATGTTGGTCCCAAAAGTTGACTCTACTTCCATTCCCTACTTCATAGGTAACTAAGCCATTGAAATCTAGCTAACCTTTGATAATGCTTTTCTAGACCTCCATTTCCCTTCTACGACTCCATGTTTTCGTGCTATACCTCCCTCCACAATGCGTGCTCTTCAACCCCAAATCTCCATAACTACTTCCCAGTAGTGCCTTGTTCAAAACTCTTAAGTTCTGTTGTTCCAGGGATATGAGGAAGATTCCAACTACTAATTCTTGGTCTCCGTTTACCGAGTCCCCCAAGCCTGTCATCATAGTTGTTTAGCTCCAACTTTGTATCATGATGTAGAGAAGATCATTCATCGCTGTATGCATATTCTTCTACCATCTTGACTTTTGCCCTTTCTAAAGTAGCAGAACAGTTATAAATACAGTTCATACCTGATTTTTGAAATTATTTCATTTTCTGAAGTCTCCTTGGGGGTGAACTATGTGAAAACTAGAATTTATGGTTCCAAGTATCATATTATTGGAATATTTCCCTTGTCCCCAGTTGCTCTAATGCTGTATTTGTTGATACATTTCATAGATGTATGTGCACATTCAGAATTTATTTCTGCTGGAGCACTTGGCCTTTTTCAGTTATTAACTTGTCTTATGGGAACTTCACAGAATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATCTATCTCTAGCTCTCGTAACCAGCATTCACTTTGGTCTTACCAGTCACCACATCTTGCTATAAGCCGGAGTTCACTGGACCTTCAAAATGCATCTTCTCAAAGATCTCGTGCAGCTTACTTAATTTCATCCAACTCATTGGGTTATCCTTGTTTATCACCTCTTAATTCAAGATATGGGTCTGCATACATTCCTAGTCCTAGCAATCCCTCGTCGAGCTATATGGGATCAACAAGTCGGCAGCCTAACCCACTGCATCACAGTGAATCAATTACAAGCTTTTCACCATTTGCTTCAGCTAACTCTCTTCCTGGATGTGAGTCGTGATTTAATTGATCATGGCAAACATTAATCAAATTGTTGAAGTCCCTTGCAGGGAACTCAGGTTGGGTTATTCTGACCTCAAATTCACGTGAAGACAATAGAGCTGATTCGTGTTGGTTGCTTTGACATCTGGACGGAGGAATACAACAGCTAGCTTCATTGCTCAACACTTCTGGGATATTGGTTTAGTAGTTGATAGGTTTGATAATTTTGAGTTTTTTACAGAGTGTACATTCTTAAAGATGGGTGTATTACTGTACGCATTGCGCCTTCTTTTGTTTATTGCTTTTTTTTTTCTTCTTACCCTCGATTTCTCTATAATAGTGATGTTTTTAGCCATGTCCACCTGACAGATGGTTGAGGCCTGTAGTTTGCA</genome_strand>
        <mrna_strand>GATAGTGGATATGGAGATATAATTGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGGAACCTCTGCTGGTGTGAAGATACTGGCAGTTTTCATTTCAAAAGCTTCTGGAGAAGCACTCACACAGTATGCTGGCTCGGATACGGAAGTATGGTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACTCAGGTTGGGTTATTCTGACCTCAAATTCACGTGAAGACAATAGAGCTGATTCGTGTTGGTTGCTTTGACATCTGGACGGAGGAATACAACAGCTAGCTTCATTGCTCAACACTTCTGGGATATTGGTTTAGTAGTTGATAGGTTTGATAATTTTGAGTTTTTTACAGAGTGTACATTCTTAAAGATGGGTGTATTACTGTACGCATTGCGCCTTCTTTTGTTTATTGCTTTTTTTTTTCTTCTTACCCTCGATTTCTCTATAATAGTGATGTTTTTAGCCATGTCCACCTGACAGATGGTTGAGGCCTGTAGTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688975" ref_strand="+" ref_description="SGN-E688975 [t3_tus_55_J07]">
      <seq>tgatagtggatatggagatataattgcaatggcaggaacctctgctggtgtgaagatactggcagttttcatttcaaaagcttctggagaagcactcacacagtatgctggctcggatacggaagtatggttaatcccaagcttggaaaactcagcttggtcaatcatggctacatctttcatttcactactttctatgtctgctgtacttgcaatgtgtttctttgttcgccgacatcatatacgaagagaacggccacgagcttctcgtgttcgcgaatttcatgggattagtagccgtttggttaaagctatgccaagtttgatatttacgtcagttgtggaggataattctacatcagtgacatgtgctatatgccttgaagattatactgctggagataagcttagaattcttccatgccggcacaggaactcaggttgggttattctgacctcaaattcacgtgaagacnatagagctgattcgtgttggtttgcttgacatctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="-" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98547" stop="94136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98247" g_stop="98219" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98218" i_stop="96604" i_length="1615">
            <donor d_prob="0.865" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96603" g_stop="96202" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="431" r_length="402" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96201" i_stop="94518" i_length="1684">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94517" g_stop="94436" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="513" r_length="82" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="-" ref_id="SGN-E688975" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98247" e_stop="98219"/>
          <exon e_start="96603" e_stop="96202"/>
          <exon e_start="94517" e_stop="94436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAGTGGATATGGAGATATAATTGCAAGTAATGAACTCTTCCATTGTACAGTTTCTATATTTATTTCACTTGCTCAAAAAAATTAAGTTTTCTTTCTTTCTTTCAATTATTCATTTAGTTCGTTCTAACTTATATTATGTTTGATGGTAGTTAACGTATCAAGTGGTATAACCTGAAATCATATCTTGAGGACGCACTAAAGTGCCCATGGTATCATCATGAACTTGCAAACAGAAACTGTAAAAGCCTAGGAATATACATGCCCAATTGAGATGGGATATGATTACATCACAATTGCATAAGGACACTATCTAATAGATCGTTGTGAGTAGTTGAATCATAATCTTTAGCGTAAACATGGCTGCATGTGCAGCATTCTTGAACTCTCTGATTGCAAGTTTTAGAATAAGGTTGAATATATTTCTGATATTAATCATTTAAGTATCAATAGTTCTACTAACTGATTTTAGATCTGGAAAAATAAGAAAATTAGTCTGCAAAATAGTTTTGACAAAAGCTTTTATTCGTATCTATCTTACTGGCAAAATGACTTCTTGAACTATTGCAAGGGAAATCTCTTGCAGATAGCTGTCACACTCTCTCAGCTGATAATAGTTTTGATTCATTGGGGTAGAAGTAAAATAATTCCTTCAAAATAGATATTTCTGGTACTATTTGTTCCTTTTTATTTTATTAGGTAAAGAAATAAGCGGTCGGATTAACAAGATTTTTTTCTTGTTCTTTTTGTACTGTTAAGGTGATTAGTTAAAATTGACATTGAACTCTTTACTCCTTGCACAAGCCAGCTATCCAACATTCTGCAATTTTGACGCAAACCTGCTGGTTTGCTTTTAATCTCCTAATGCTCTGTTTATCCCATATAAAATGTTGATGAAACTTCTGAACTGTCAATTGATCAACCCAACTATGCTTCCTTCTCTAACTAGTTATTCATGAAGACTGATAGGACGACATATAAAAGGGTTAATTGGATGTTCAATCTGGTGAAGAGAAATTGATCCATGTTTGTCTTCTTTGATTGGCTTGAGCCAGCATGATCCAACAATGGTGCATCTGAAATGTTCATATCAGAAAACTGACAAACTAGCAGAGCAGTTTATTACATAGGAGCGGGGGTTTTACCCTGTGCGCACCCACAGGGTAGCGGCCGTGGGTTTGCCTAGTCATAACAAAGAAAACTAGCAGATTAGTTTTGCCTACCCCCTTCCACTAGGAAAATGAAAGGAATTAGGCACAATTTCCCCCCTAGACTATGACCGAAGTCCTAGAGACACACCTAAACTTAACTAGGGTCCTATTTACCCCCAGCACTCAGTTGTTCCGTGTTTTTGTGCACCTTTTGTGCTGATAACTCATAAAACTTTTGTCAGACTTCAAAAACCATCTTCATCTCTTGCTTTTGAATGATTTATAATTGTTGATTTTTGAGTTAAGTTACCAAATTAAAAAATTGTTGATTTTGAGCAAGTAGCTTCACCTCTTCAAAAATAGTTCCGGGTGCATGTCGGATCCTCCAAAAGTAATGCATTTTTAGAGGATCCGACATGGGTGCGATAGTATCTTGAAGAGTCTGATCATCGTTATTTTGACAAGCAAAGGTTTGATCAGACACATGATACAGTGGCAGGAACCTCTGCTGGTGTGAAGATACTGGCAGTTTTCATTTCAAAAGCTTCTGGAGAAGCACTCACACAGTATGCTGGCTCGGATACGGAAGTATGGTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACAGTAAGTTATCCTCATTCTCTCTTTGATTTTTGGTACCATGCCAGACTAATCAGTGATCATGGTTGATAAGCACTAATGTATCCCCTTTAAACATGAAACAATTTTAGTGTCACCACTAAGGAAACTTGACTTGTCTCCCACCAAAAGCTTATGGTAGTTTGACCTTACTGAAAATGCACCCAGCACCATCACTTCTTGCCACCCCACCTCTGTGGGTTCCTACTGGTGAGTGTGGTATTCTGTTTGTAAGGCGTTTCCATCAGCCTTTGCAATTCATCCATCTCTCAATCTTGTAAATTCCAGACAATAAATTCCCCCCTTTCGCGTCACCCTAATCTGTTGTACCATCGCCTCTTTCTAGCATGAAACTCTGAATAACTTGGGAGAGGTTGTCCTCCTATACTTCTATGCACCTATGTTGGTCCCAAAAGTTGACTCTACTTCCATTCCCTACTTCATAGGTAACTAAGCCATTGAAATCTAGCTAACCTTTGATAATGCTTTTCTAGACCTCCATTTCCCTTCTACGACTCCATGTTTTCGTGCTATACCTCCCTCCACAATGCGTGCTCTTCAACCCCAAATCTCCATAACTACTTCCCAGTAGTGCCTTGTTCAAAACTCTTAAGTTCTGTTGTTCCAGGGATATGAGGAAGATTCCAACTACTAATTCTTGGTCTCCGTTTACCGAGTCCCCCAAGCCTGTCATCATAGTTGTTTAGCTCCAACTTTGTATCATGATGTAGAGAAGATCATTCATCGCTGTATGCATATTCTTCTACCATCTTGACTTTTGCCCTTTCTAAAGTAGCAGAACAGTTATAAATACAGTTCATACCTGATTTTTGAAATTATTTCATTTTCTGAAGTCTCCTTGGGGGTGAACTATGTGAAAACTAGAATTTATGGTTCCAAGTATCATATTATTGGAATATTTCCCTTGTCCCCAGTTGCTCTAATGCTGTATTTGTTGATACATTTCATAGATGTATGTGCACATTCAGAATTTATTTCTGCTGGAGCACTTGGCCTTTTTCAGTTATTAACTTGTCTTATGGGAACTTCACAGAATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATCTATCTCTAGCTCTCGTAACCAGCATTCACTTTGGTCTTACCAGTCACCACATCTTGCTATAAGCCGGAGTTCACTGGACCTTCAAAATGCATCTTCTCAAAGATCTCGTGCAGCTTACTTAATTTCATCCAACTCATTGGGTTATCCTTGTTTATCACCTCTTAATTCAAGATATGGGTCTGCATACATTCCTAGTCCTAGCAATCCCTCGTCGAGCTATATGGGATCAACAAGTCGGCAGCCTAACCCACTGCATCACAGTGAATCAATTACAAGCTTTTCACCATTTGCTTCAGCTAACTCTCTTCCTGGATGTGAGTCGTGATTTAATTGATCATGGCAAACATTAATCAAATTGTTGAAGTCCCTTGCAGGGAACTCAGGTTGGGTTATTCTGACCTCAAATTCACGTGAAGACAATAGAGCTGATTCGTGTTGGTTGCTTTGACATCTGGA</genome_strand>
        <mrna_strand>TGATAGTGGATATGGAGATATAATTGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGGAACCTCTGCTGGTGTGAAGATACTGGCAGTTTTCATTTCAAAAGCTTCTGGAGAAGCACTCACACAGTATGCTGGCTCGGATACGGAAGTATGGTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACTCAGGTTGGGTTATTCTGACCTCAAATTCACGTGAAGACNATAGAGCTGATTCGTGTTGGTTTGCTTGACATCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551488" ref_strand="+" ref_description="SGN-E551488 [TUS-55-J7]">
      <seq>tgatagtggatatggagatataattgcaatggcaggaacctctgctggtgtgaagatactggcagttttcatttcaaaagcttctggagaagcactcacacagtatgctggctcggatacggaagtatggttaatcccaagcttggaaaactcagcttggtcaatcatggctacatctttcatttcactactttctatgtctgctgtacttgcaatgtgtttctttgttcgccgacatcatatacaaagagaacggccacgagcttctcgtgttcgcgaatttcatgggattagtagccgtttggttaaagctatgccaagtttgatatttacgtcagttgtggaggataattctacatcagtgacatgtgctatatgccttgaagattatactgctggagataagcttagaattcttccatgccggcacaggaactcaggttgggttattctgacctcaaattcacgtgaagacnatagagctgattcgtgttggttgctttgacatctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="-" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98547" stop="94136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98247" g_stop="98219" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98218" i_stop="96604" i_length="1615">
            <donor d_prob="0.865" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96603" g_stop="96202" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="431" r_length="402" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96201" i_stop="94518" i_length="1684">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94517" g_stop="94436" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="513" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="-" ref_id="SGN-E551488" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98247" e_stop="98219"/>
          <exon e_start="96603" e_stop="96202"/>
          <exon e_start="94517" e_stop="94436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAGTGGATATGGAGATATAATTGCAAGTAATGAACTCTTCCATTGTACAGTTTCTATATTTATTTCACTTGCTCAAAAAAATTAAGTTTTCTTTCTTTCTTTCAATTATTCATTTAGTTCGTTCTAACTTATATTATGTTTGATGGTAGTTAACGTATCAAGTGGTATAACCTGAAATCATATCTTGAGGACGCACTAAAGTGCCCATGGTATCATCATGAACTTGCAAACAGAAACTGTAAAAGCCTAGGAATATACATGCCCAATTGAGATGGGATATGATTACATCACAATTGCATAAGGACACTATCTAATAGATCGTTGTGAGTAGTTGAATCATAATCTTTAGCGTAAACATGGCTGCATGTGCAGCATTCTTGAACTCTCTGATTGCAAGTTTTAGAATAAGGTTGAATATATTTCTGATATTAATCATTTAAGTATCAATAGTTCTACTAACTGATTTTAGATCTGGAAAAATAAGAAAATTAGTCTGCAAAATAGTTTTGACAAAAGCTTTTATTCGTATCTATCTTACTGGCAAAATGACTTCTTGAACTATTGCAAGGGAAATCTCTTGCAGATAGCTGTCACACTCTCTCAGCTGATAATAGTTTTGATTCATTGGGGTAGAAGTAAAATAATTCCTTCAAAATAGATATTTCTGGTACTATTTGTTCCTTTTTATTTTATTAGGTAAAGAAATAAGCGGTCGGATTAACAAGATTTTTTTCTTGTTCTTTTTGTACTGTTAAGGTGATTAGTTAAAATTGACATTGAACTCTTTACTCCTTGCACAAGCCAGCTATCCAACATTCTGCAATTTTGACGCAAACCTGCTGGTTTGCTTTTAATCTCCTAATGCTCTGTTTATCCCATATAAAATGTTGATGAAACTTCTGAACTGTCAATTGATCAACCCAACTATGCTTCCTTCTCTAACTAGTTATTCATGAAGACTGATAGGACGACATATAAAAGGGTTAATTGGATGTTCAATCTGGTGAAGAGAAATTGATCCATGTTTGTCTTCTTTGATTGGCTTGAGCCAGCATGATCCAACAATGGTGCATCTGAAATGTTCATATCAGAAAACTGACAAACTAGCAGAGCAGTTTATTACATAGGAGCGGGGGTTTTACCCTGTGCGCACCCACAGGGTAGCGGCCGTGGGTTTGCCTAGTCATAACAAAGAAAACTAGCAGATTAGTTTTGCCTACCCCCTTCCACTAGGAAAATGAAAGGAATTAGGCACAATTTCCCCCCTAGACTATGACCGAAGTCCTAGAGACACACCTAAACTTAACTAGGGTCCTATTTACCCCCAGCACTCAGTTGTTCCGTGTTTTTGTGCACCTTTTGTGCTGATAACTCATAAAACTTTTGTCAGACTTCAAAAACCATCTTCATCTCTTGCTTTTGAATGATTTATAATTGTTGATTTTTGAGTTAAGTTACCAAATTAAAAAATTGTTGATTTTGAGCAAGTAGCTTCACCTCTTCAAAAATAGTTCCGGGTGCATGTCGGATCCTCCAAAAGTAATGCATTTTTAGAGGATCCGACATGGGTGCGATAGTATCTTGAAGAGTCTGATCATCGTTATTTTGACAAGCAAAGGTTTGATCAGACACATGATACAGTGGCAGGAACCTCTGCTGGTGTGAAGATACTGGCAGTTTTCATTTCAAAAGCTTCTGGAGAAGCACTCACACAGTATGCTGGCTCGGATACGGAAGTATGGTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACAGTAAGTTATCCTCATTCTCTCTTTGATTTTTGGTACCATGCCAGACTAATCAGTGATCATGGTTGATAAGCACTAATGTATCCCCTTTAAACATGAAACAATTTTAGTGTCACCACTAAGGAAACTTGACTTGTCTCCCACCAAAAGCTTATGGTAGTTTGACCTTACTGAAAATGCACCCAGCACCATCACTTCTTGCCACCCCACCTCTGTGGGTTCCTACTGGTGAGTGTGGTATTCTGTTTGTAAGGCGTTTCCATCAGCCTTTGCAATTCATCCATCTCTCAATCTTGTAAATTCCAGACAATAAATTCCCCCCTTTCGCGTCACCCTAATCTGTTGTACCATCGCCTCTTTCTAGCATGAAACTCTGAATAACTTGGGAGAGGTTGTCCTCCTATACTTCTATGCACCTATGTTGGTCCCAAAAGTTGACTCTACTTCCATTCCCTACTTCATAGGTAACTAAGCCATTGAAATCTAGCTAACCTTTGATAATGCTTTTCTAGACCTCCATTTCCCTTCTACGACTCCATGTTTTCGTGCTATACCTCCCTCCACAATGCGTGCTCTTCAACCCCAAATCTCCATAACTACTTCCCAGTAGTGCCTTGTTCAAAACTCTTAAGTTCTGTTGTTCCAGGGATATGAGGAAGATTCCAACTACTAATTCTTGGTCTCCGTTTACCGAGTCCCCCAAGCCTGTCATCATAGTTGTTTAGCTCCAACTTTGTATCATGATGTAGAGAAGATCATTCATCGCTGTATGCATATTCTTCTACCATCTTGACTTTTGCCCTTTCTAAAGTAGCAGAACAGTTATAAATACAGTTCATACCTGATTTTTGAAATTATTTCATTTTCTGAAGTCTCCTTGGGGGTGAACTATGTGAAAACTAGAATTTATGGTTCCAAGTATCATATTATTGGAATATTTCCCTTGTCCCCAGTTGCTCTAATGCTGTATTTGTTGATACATTTCATAGATGTATGTGCACATTCAGAATTTATTTCTGCTGGAGCACTTGGCCTTTTTCAGTTATTAACTTGTCTTATGGGAACTTCACAGAATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATCTATCTCTAGCTCTCGTAACCAGCATTCACTTTGGTCTTACCAGTCACCACATCTTGCTATAAGCCGGAGTTCACTGGACCTTCAAAATGCATCTTCTCAAAGATCTCGTGCAGCTTACTTAATTTCATCCAACTCATTGGGTTATCCTTGTTTATCACCTCTTAATTCAAGATATGGGTCTGCATACATTCCTAGTCCTAGCAATCCCTCGTCGAGCTATATGGGATCAACAAGTCGGCAGCCTAACCCACTGCATCACAGTGAATCAATTACAAGCTTTTCACCATTTGCTTCAGCTAACTCTCTTCCTGGATGTGAGTCGTGATTTAATTGATCATGGCAAACATTAATCAAATTGTTGAAGTCCCTTGCAGGGAACTCAGGTTGGGTTATTCTGACCTCAAATTCACGTGAAGACAATAGAGCTGATTCGTGTTGGTTGCTTTGACATCTGGA</genome_strand>
        <mrna_strand>TGATAGTGGATATGGAGATATAATTGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGGAACCTCTGCTGGTGTGAAGATACTGGCAGTTTTCATTTCAAAAGCTTCTGGAGAAGCACTCACACAGTATGCTGGCTCGGATACGGAAGTATGGTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACAAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACTCAGGTTGGGTTATTCTGACCTCAAATTCACGTGAAGACNATAGAGCTGATTCGTGTTGGTTGCTTTGACATCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254864" ref_strand="+" ref_description="SGN-E254864 [cLEG-33-D22]">
      <seq>gatagtggatatggagatataattgcaatggcaggaacctctgctggtgtgaagagactggcagttttcatttcaaaagcttctggagaagcactcacacagtatgctggctcggatacggaagtatggttaatcccaagcttggaaaactcagcttggtcaatcatggctacatctttcatttcactactttctatgtctgctgtacttgcaatgtgtttctttgttcgccgacatcatatacgaagagaacggccacgagcttctcgtgttcgcgaatttcatgggattagtagccgtttggttaaagctatgccaagtttgatatttacgtcagttgtggaggataattctacatcagtgacatgtgctatatgcgcttgaagatttaacactgctggagataagcttagaattcttccatgccggcacaggaactcaggttgggttattctgacctcaaattcacgtgaagacaatagagctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="-" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98546" stop="94162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98246" g_stop="98219" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98218" i_stop="96604" i_length="1615">
            <donor d_prob="0.865" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96603" g_stop="96202" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="433" r_length="405" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96201" i_stop="94518" i_length="1684">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94517" g_stop="94462" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="489" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="-" ref_id="SGN-E254864" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98246" e_stop="98219"/>
          <exon e_start="96603" e_stop="96202"/>
          <exon e_start="94517" e_stop="94462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTGGATATGGAGATATAATTGCAAGTAATGAACTCTTCCATTGTACAGTTTCTATATTTATTTCACTTGCTCAAAAAAATTAAGTTTTCTTTCTTTCTTTCAATTATTCATTTAGTTCGTTCTAACTTATATTATGTTTGATGGTAGTTAACGTATCAAGTGGTATAACCTGAAATCATATCTTGAGGACGCACTAAAGTGCCCATGGTATCATCATGAACTTGCAAACAGAAACTGTAAAAGCCTAGGAATATACATGCCCAATTGAGATGGGATATGATTACATCACAATTGCATAAGGACACTATCTAATAGATCGTTGTGAGTAGTTGAATCATAATCTTTAGCGTAAACATGGCTGCATGTGCAGCATTCTTGAACTCTCTGATTGCAAGTTTTAGAATAAGGTTGAATATATTTCTGATATTAATCATTTAAGTATCAATAGTTCTACTAACTGATTTTAGATCTGGAAAAATAAGAAAATTAGTCTGCAAAATAGTTTTGACAAAAGCTTTTATTCGTATCTATCTTACTGGCAAAATGACTTCTTGAACTATTGCAAGGGAAATCTCTTGCAGATAGCTGTCACACTCTCTCAGCTGATAATAGTTTTGATTCATTGGGGTAGAAGTAAAATAATTCCTTCAAAATAGATATTTCTGGTACTATTTGTTCCTTTTTATTTTATTAGGTAAAGAAATAAGCGGTCGGATTAACAAGATTTTTTTCTTGTTCTTTTTGTACTGTTAAGGTGATTAGTTAAAATTGACATTGAACTCTTTACTCCTTGCACAAGCCAGCTATCCAACATTCTGCAATTTTGACGCAAACCTGCTGGTTTGCTTTTAATCTCCTAATGCTCTGTTTATCCCATATAAAATGTTGATGAAACTTCTGAACTGTCAATTGATCAACCCAACTATGCTTCCTTCTCTAACTAGTTATTCATGAAGACTGATAGGACGACATATAAAAGGGTTAATTGGATGTTCAATCTGGTGAAGAGAAATTGATCCATGTTTGTCTTCTTTGATTGGCTTGAGCCAGCATGATCCAACAATGGTGCATCTGAAATGTTCATATCAGAAAACTGACAAACTAGCAGAGCAGTTTATTACATAGGAGCGGGGGTTTTACCCTGTGCGCACCCACAGGGTAGCGGCCGTGGGTTTGCCTAGTCATAACAAAGAAAACTAGCAGATTAGTTTTGCCTACCCCCTTCCACTAGGAAAATGAAAGGAATTAGGCACAATTTCCCCCCTAGACTATGACCGAAGTCCTAGAGACACACCTAAACTTAACTAGGGTCCTATTTACCCCCAGCACTCAGTTGTTCCGTGTTTTTGTGCACCTTTTGTGCTGATAACTCATAAAACTTTTGTCAGACTTCAAAAACCATCTTCATCTCTTGCTTTTGAATGATTTATAATTGTTGATTTTTGAGTTAAGTTACCAAATTAAAAAATTGTTGATTTTGAGCAAGTAGCTTCACCTCTTCAAAAATAGTTCCGGGTGCATGTCGGATCCTCCAAAAGTAATGCATTTTTAGAGGATCCGACATGGGTGCGATAGTATCTTGAAGAGTCTGATCATCGTTATTTTGACAAGCAAAGGTTTGATCAGACACATGATACAGTGGCAGGAACCTCTGCTGGTGTGAAGATACTGGCAGTTTTCATTTCAAAAGCTTCTGGAGAAGCACTCACACAGTATGCTGGCTCGGATACGGAAGTATGGTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGC-CTTGAAGA-TT-ATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACAGTAAGTTATCCTCATTCTCTCTTTGATTTTTGGTACCATGCCAGACTAATCAGTGATCATGGTTGATAAGCACTAATGTATCCCCTTTAAACATGAAACAATTTTAGTGTCACCACTAAGGAAACTTGACTTGTCTCCCACCAAAAGCTTATGGTAGTTTGACCTTACTGAAAATGCACCCAGCACCATCACTTCTTGCCACCCCACCTCTGTGGGTTCCTACTGGTGAGTGTGGTATTCTGTTTGTAAGGCGTTTCCATCAGCCTTTGCAATTCATCCATCTCTCAATCTTGTAAATTCCAGACAATAAATTCCCCCCTTTCGCGTCACCCTAATCTGTTGTACCATCGCCTCTTTCTAGCATGAAACTCTGAATAACTTGGGAGAGGTTGTCCTCCTATACTTCTATGCACCTATGTTGGTCCCAAAAGTTGACTCTACTTCCATTCCCTACTTCATAGGTAACTAAGCCATTGAAATCTAGCTAACCTTTGATAATGCTTTTCTAGACCTCCATTTCCCTTCTACGACTCCATGTTTTCGTGCTATACCTCCCTCCACAATGCGTGCTCTTCAACCCCAAATCTCCATAACTACTTCCCAGTAGTGCCTTGTTCAAAACTCTTAAGTTCTGTTGTTCCAGGGATATGAGGAAGATTCCAACTACTAATTCTTGGTCTCCGTTTACCGAGTCCCCCAAGCCTGTCATCATAGTTGTTTAGCTCCAACTTTGTATCATGATGTAGAGAAGATCATTCATCGCTGTATGCATATTCTTCTACCATCTTGACTTTTGCCCTTTCTAAAGTAGCAGAACAGTTATAAATACAGTTCATACCTGATTTTTGAAATTATTTCATTTTCTGAAGTCTCCTTGGGGGTGAACTATGTGAAAACTAGAATTTATGGTTCCAAGTATCATATTATTGGAATATTTCCCTTGTCCCCAGTTGCTCTAATGCTGTATTTGTTGATACATTTCATAGATGTATGTGCACATTCAGAATTTATTTCTGCTGGAGCACTTGGCCTTTTTCAGTTATTAACTTGTCTTATGGGAACTTCACAGAATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATCTATCTCTAGCTCTCGTAACCAGCATTCACTTTGGTCTTACCAGTCACCACATCTTGCTATAAGCCGGAGTTCACTGGACCTTCAAAATGCATCTTCTCAAAGATCTCGTGCAGCTTACTTAATTTCATCCAACTCATTGGGTTATCCTTGTTTATCACCTCTTAATTCAAGATATGGGTCTGCATACATTCCTAGTCCTAGCAATCCCTCGTCGAGCTATATGGGATCAACAAGTCGGCAGCCTAACCCACTGCATCACAGTGAATCAATTACAAGCTTTTCACCATTTGCTTCAGCTAACTCTCTTCCTGGATGTGAGTCGTGATTTAATTGATCATGGCAAACATTAATCAAATTGTTGAAGTCCCTTGCAGGGAACTCAGGTTGGGTTATTCTGACCTCAAATTCACGTGAAGACAATAGAGCTGAT</genome_strand>
        <mrna_strand>GATAGTGGATATGGAGATATAATTGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGGAACCTCTGCTGGTGTGAAGAGACTGGCAGTTTTCATTTCAAAAGCTTCTGGAGAAGCACTCACACAGTATGCTGGCTCGGATACGGAAGTATGGTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCGCTTGAAGATTTAACACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACTCAGGTTGGGTTATTCTGACCTCAAATTCACGTGAAGACAATAGAGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275611" ref_strand="+" ref_description="SGN-E275611 [cLEN-10-J14]">
      <seq>tcatggctacatctttcatttcactactttctatgtctgctgtacttgcaatgtgtttctttgttcgccgacatcatatacgaagagaacggccacgagcttctcgtgttcgcgaatttcatgggattagtagccgtttggttaaagctatgccaagtttgatatttacgtcagttgtggaggataattctacatcagtgacatgtgctatatgccttgaagattatactgctggagataagcttagaattcttccatgccggcacaaatttcacactatgtgtgttgatgcttggctgacatcatggagaaccttttgccctgtctgcaaacgggatgcaagaactagcactggtgatccaccagcatcagaatctacaccattgctttcttccagtctgcgatctgtatcttcagtgtcatctctgaggtcatcattagcatcatcagaagtgatacatataggcacaggagcatctcgatcaccttcagtttctcgtcctcaatctatctctagctctcgtaaccagcattcactttggtcttaccagtcaccacatcttgctataagccggagttcactggaccttcaaaatgcatcttctcaaagatctcgtgcagcttacttaatttcatccaactcattgggttatccttgtttatcacctcttaattcaagatatgggtctgcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="-" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96768" stop="94405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96468" g_stop="96202" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96201" i_stop="95133" i_length="1069">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.226" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95132" g_stop="94705" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="695" r_length="428" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="-" ref_id="SGN-E275611" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96468" e_stop="96202"/>
          <exon e_start="95132" e_stop="94705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACAGTAAGTTATCCTCATTCTCTCTTTGATTTTTGGTACCATGCCAGACTAATCAGTGATCATGGTTGATAAGCACTAATGTATCCCCTTTAAACATGAAACAATTTTAGTGTCACCACTAAGGAAACTTGACTTGTCTCCCACCAAAAGCTTATGGTAGTTTGACCTTACTGAAAATGCACCCAGCACCATCACTTCTTGCCACCCCACCTCTGTGGGTTCCTACTGGTGAGTGTGGTATTCTGTTTGTAAGGCGTTTCCATCAGCCTTTGCAATTCATCCATCTCTCAATCTTGTAAATTCCAGACAATAAATTCCCCCCTTTCGCGTCACCCTAATCTGTTGTACCATCGCCTCTTTCTAGCATGAAACTCTGAATAACTTGGGAGAGGTTGTCCTCCTATACTTCTATGCACCTATGTTGGTCCCAAAAGTTGACTCTACTTCCATTCCCTACTTCATAGGTAACTAAGCCATTGAAATCTAGCTAACCTTTGATAATGCTTTTCTAGACCTCCATTTCCCTTCTACGACTCCATGTTTTCGTGCTATACCTCCCTCCACAATGCGTGCTCTTCAACCCCAAATCTCCATAACTACTTCCCAGTAGTGCCTTGTTCAAAACTCTTAAGTTCTGTTGTTCCAGGGATATGAGGAAGATTCCAACTACTAATTCTTGGTCTCCGTTTACCGAGTCCCCCAAGCCTGTCATCATAGTTGTTTAGCTCCAACTTTGTATCATGATGTAGAGAAGATCATTCATCGCTGTATGCATATTCTTCTACCATCTTGACTTTTGCCCTTTCTAAAGTAGCAGAACAGTTATAAATACAGTTCATACCTGATTTTTGAAATTATTTCATTTTCTGAAGTCTCCTTGGGGGTGAACTATGTGAAAACTAGAATTTATGGTTCCAAGTATCATATTATTGGAATATTTCCCTTGTCCCCAGTTGCTCTAATGCTGTATTTGTTGATACATTTCATAGATGTATGTGCACATTCAGAATTTATTTCTGCTGGAGCACTTGGCCTTTTTCAGTTATTAACTTGTCTTATGGGAACTTCACAGAATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATCTATCTCTAGCTCTCGTAACCAGCATTCACTTTGGTCTTACCAGTCACCACATCTTGCTATAAGCCGGAGTTCACTGGACCTTCAAAATGCATCTTCTCAAAGATCTCGTGCAGCTTACTTAATTTCATCCAACTCATTGGGTTATCCTTGTTTATCACCTCTTAATTCAAGATATGGGTCTGCATAC</genome_strand>
        <mrna_strand>TCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATCTATCTCTAGCTCTCGTAACCAGCATTCACTTTGGTCTTACCAGTCACCACATCTTGCTATAAGCCGGAGTTCACTGGACCTTCAAAATGCATCTTCTCAAAGATCTCGTGCAGCTTACTTAATTTCATCCAACTCATTGGGTTATCCTTGTTTATCACCTCTTAATTCAAGATATGGGTCTGCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E597379" ref_strand="+" ref_description="SGN-E597379 [40882]">
      <seq>cagcatcagaatctacaccattgctttcttccagtctgcggtctgtatcttcaatgtcatctctgaggtcatcattagcatcatcagcagtgatacatataggcacaggagaatctcaatcaccttcagtttctcgtcctcaatcattctctagctctcataaccagcattcactttggtcgtaccagtcaccacatcttactataagccgaatttcactggaccttcaaaatgcatcttctcaaagatctcgtgcagcttacttaatttcatccaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="-" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95336" stop="94458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95036" g_stop="94758" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="-" ref_id="SGN-E597379" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E597379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95036" e_stop="94758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATCTATCTCTAGCTCTCGTAACCAGCATTCACTTTGGTCTTACCAGTCACCACATCTTGCTATAAGCCGGAGTTCACTGGACCTTCAAAATGCATCTTCTCAAAGATCTCGTGCAGCTTACTTAATTTCATCCAACT</genome_strand>
        <mrna_strand>CAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGGTCTGTATCTTCAATGTCATCTCTGAGGTCATCATTAGCATCATCAGCAGTGATACATATAGGCACAGGAGAATCTCAATCACCTTCAGTTTCTCGTCCTCAATCATTCTCTAGCTCTCATAACCAGCATTCACTTTGGTCGTACCAGTCACCACATCTTACTATAAGCCGAATTTCACTGGACCTTCAAAATGCATCTTCTCAAAGATCTCGTGCAGCTTACTTAATTTCATCCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236446" ref_strand="+" ref_description="SGN-E236446 [cLED-13-J23]">
      <seq>taatcccaagcttggaaaactcagcttggtcaatcatggctacatctttcatttcactactttctatgtctgctgtacttgcaatgtgtttctttgttcgccgacatcatatacgaagagaacggccacgagcttctcgtgttcgcgaatttcatgggattagtagccgtttggttaaagctatgccaagtttgatatttacgtcagttgtggaggataattctacatcagtgacatgtgctatatgccttgaagattatactgctggagataagcttagaattcttccatgccggcacaaatttcacactatgtgtgttgatgcttggctgacatcatggagaaccttttgccctgtctgcaaacgggatgcaagaactagcactggtgatccaccagcatcagaatctacaccattgctttcttccagtctgcgatctgtatcttcagtgtcatctctgaggtcatcattagcatcatcagaagtgatacatataggcacaggagcatctcgatcaccttcagtttctcgtcctcaatctatctctagctctcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="-" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96801" stop="94576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96501" g_stop="96202" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96201" i_stop="95133" i_length="1069">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.226" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95132" g_stop="94876" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="557" r_length="257" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="-" ref_id="SGN-E236446" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96501" e_stop="96202"/>
          <exon e_start="95132" e_stop="94876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACAGTAAGTTATCCTCATTCTCTCTTTGATTTTTGGTACCATGCCAGACTAATCAGTGATCATGGTTGATAAGCACTAATGTATCCCCTTTAAACATGAAACAATTTTAGTGTCACCACTAAGGAAACTTGACTTGTCTCCCACCAAAAGCTTATGGTAGTTTGACCTTACTGAAAATGCACCCAGCACCATCACTTCTTGCCACCCCACCTCTGTGGGTTCCTACTGGTGAGTGTGGTATTCTGTTTGTAAGGCGTTTCCATCAGCCTTTGCAATTCATCCATCTCTCAATCTTGTAAATTCCAGACAATAAATTCCCCCCTTTCGCGTCACCCTAATCTGTTGTACCATCGCCTCTTTCTAGCATGAAACTCTGAATAACTTGGGAGAGGTTGTCCTCCTATACTTCTATGCACCTATGTTGGTCCCAAAAGTTGACTCTACTTCCATTCCCTACTTCATAGGTAACTAAGCCATTGAAATCTAGCTAACCTTTGATAATGCTTTTCTAGACCTCCATTTCCCTTCTACGACTCCATGTTTTCGTGCTATACCTCCCTCCACAATGCGTGCTCTTCAACCCCAAATCTCCATAACTACTTCCCAGTAGTGCCTTGTTCAAAACTCTTAAGTTCTGTTGTTCCAGGGATATGAGGAAGATTCCAACTACTAATTCTTGGTCTCCGTTTACCGAGTCCCCCAAGCCTGTCATCATAGTTGTTTAGCTCCAACTTTGTATCATGATGTAGAGAAGATCATTCATCGCTGTATGCATATTCTTCTACCATCTTGACTTTTGCCCTTTCTAAAGTAGCAGAACAGTTATAAATACAGTTCATACCTGATTTTTGAAATTATTTCATTTTCTGAAGTCTCCTTGGGGGTGAACTATGTGAAAACTAGAATTTATGGTTCCAAGTATCATATTATTGGAATATTTCCCTTGTCCCCAGTTGCTCTAATGCTGTATTTGTTGATACATTTCATAGATGTATGTGCACATTCAGAATTTATTTCTGCTGGAGCACTTGGCCTTTTTCAGTTATTAACTTGTCTTATGGGAACTTCACAGAATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATCTATCTCTAGCTCTCGT</genome_strand>
        <mrna_strand>TAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATCTATCTCTAGCTCTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232832" ref_strand="+" ref_description="SGN-E232832 [cLED-8-G9]">
      <seq>taatcccaagcttggaaaactcagcttggtcaatcatggctacatctttcatttcactactttctatgtctgctgtacttgcaatgtgtttctttgttcgccgacatcatatacgaagagaacggccacgagcttctcgtgttcgcgaatttcatgggattagtagccgtttggttaaagctatgccaagtttgatatttacgtcagttgtggaggataattctacatcagtgacatgtgctatatgccttgaagattatactgctggagataagcttagaattcttccatgccggcacaaatttcacactatgtgtgttgatgcttggctgacatcatggagaaccttttgccctgtctgcaaacgggatgcaagaactagcactggtgatccaccagcatcagaatctacaccattgctttcttccagtctgcgatctgtatcttcagtgtcatctctgaggtcatcattagcatcatcagaagtgatacatataggcacaggagcatctcgatcaccttcagtttctcgtcctcaatctatctctagctctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="-" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96801" stop="94577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96501" g_stop="96202" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96201" i_stop="95133" i_length="1069">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.226" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95132" g_stop="94877" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="556" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="-" ref_id="SGN-E232832" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96501" e_stop="96202"/>
          <exon e_start="95132" e_stop="94877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACAGTAAGTTATCCTCATTCTCTCTTTGATTTTTGGTACCATGCCAGACTAATCAGTGATCATGGTTGATAAGCACTAATGTATCCCCTTTAAACATGAAACAATTTTAGTGTCACCACTAAGGAAACTTGACTTGTCTCCCACCAAAAGCTTATGGTAGTTTGACCTTACTGAAAATGCACCCAGCACCATCACTTCTTGCCACCCCACCTCTGTGGGTTCCTACTGGTGAGTGTGGTATTCTGTTTGTAAGGCGTTTCCATCAGCCTTTGCAATTCATCCATCTCTCAATCTTGTAAATTCCAGACAATAAATTCCCCCCTTTCGCGTCACCCTAATCTGTTGTACCATCGCCTCTTTCTAGCATGAAACTCTGAATAACTTGGGAGAGGTTGTCCTCCTATACTTCTATGCACCTATGTTGGTCCCAAAAGTTGACTCTACTTCCATTCCCTACTTCATAGGTAACTAAGCCATTGAAATCTAGCTAACCTTTGATAATGCTTTTCTAGACCTCCATTTCCCTTCTACGACTCCATGTTTTCGTGCTATACCTCCCTCCACAATGCGTGCTCTTCAACCCCAAATCTCCATAACTACTTCCCAGTAGTGCCTTGTTCAAAACTCTTAAGTTCTGTTGTTCCAGGGATATGAGGAAGATTCCAACTACTAATTCTTGGTCTCCGTTTACCGAGTCCCCCAAGCCTGTCATCATAGTTGTTTAGCTCCAACTTTGTATCATGATGTAGAGAAGATCATTCATCGCTGTATGCATATTCTTCTACCATCTTGACTTTTGCCCTTTCTAAAGTAGCAGAACAGTTATAAATACAGTTCATACCTGATTTTTGAAATTATTTCATTTTCTGAAGTCTCCTTGGGGGTGAACTATGTGAAAACTAGAATTTATGGTTCCAAGTATCATATTATTGGAATATTTCCCTTGTCCCCAGTTGCTCTAATGCTGTATTTGTTGATACATTTCATAGATGTATGTGCACATTCAGAATTTATTTCTGCTGGAGCACTTGGCCTTTTTCAGTTATTAACTTGTCTTATGGGAACTTCACAGAATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATCTATCTCTAGCTCTCG</genome_strand>
        <mrna_strand>TAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATCTATCTCTAGCTCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236184" ref_strand="+" ref_description="SGN-E236184 [cLED-20-I19]">
      <seq>taatcccaagtcttgtaaaactcagcttggtcaatcatggctacatctttcatttcactactttctatgtctgctgtacttgcaatgtgtttctttgttcgccgacatcatatacgaagagaacggccacgagcttctcgtgttcgcgaatttcatgggattagtagccgtttggttaaagctatgccaagtttgatatttacgtcagttgtggaggataattctacatcagtgacatgtgctatatgccttgaagattatactgctggagataagcttagaattcttccatgccggcacaaatttcacactatgtgtgttgatgcttggctgacatcatggagaaccttttgccctgtctgcaaacgggatgcaagaactagcactggtgatccaccagcatcagaatctacaccattgctttcttccagtctgcgatctgtatcttcagtgtcatctctgaggtcatcattagcatcatcagaagtgatacatataggcacaggagcatctcgatcaccttcagtttctcggcctcaatctatctctagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="-" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96801" stop="94580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96501" g_stop="96202" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96201" i_stop="95133" i_length="1069">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.226" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95132" g_stop="94880" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="554" r_length="253" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="-" ref_id="SGN-E236184" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96501" e_stop="96202"/>
          <exon e_start="95132" e_stop="94880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCCCAAG-CTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACAGTAAGTTATCCTCATTCTCTCTTTGATTTTTGGTACCATGCCAGACTAATCAGTGATCATGGTTGATAAGCACTAATGTATCCCCTTTAAACATGAAACAATTTTAGTGTCACCACTAAGGAAACTTGACTTGTCTCCCACCAAAAGCTTATGGTAGTTTGACCTTACTGAAAATGCACCCAGCACCATCACTTCTTGCCACCCCACCTCTGTGGGTTCCTACTGGTGAGTGTGGTATTCTGTTTGTAAGGCGTTTCCATCAGCCTTTGCAATTCATCCATCTCTCAATCTTGTAAATTCCAGACAATAAATTCCCCCCTTTCGCGTCACCCTAATCTGTTGTACCATCGCCTCTTTCTAGCATGAAACTCTGAATAACTTGGGAGAGGTTGTCCTCCTATACTTCTATGCACCTATGTTGGTCCCAAAAGTTGACTCTACTTCCATTCCCTACTTCATAGGTAACTAAGCCATTGAAATCTAGCTAACCTTTGATAATGCTTTTCTAGACCTCCATTTCCCTTCTACGACTCCATGTTTTCGTGCTATACCTCCCTCCACAATGCGTGCTCTTCAACCCCAAATCTCCATAACTACTTCCCAGTAGTGCCTTGTTCAAAACTCTTAAGTTCTGTTGTTCCAGGGATATGAGGAAGATTCCAACTACTAATTCTTGGTCTCCGTTTACCGAGTCCCCCAAGCCTGTCATCATAGTTGTTTAGCTCCAACTTTGTATCATGATGTAGAGAAGATCATTCATCGCTGTATGCATATTCTTCTACCATCTTGACTTTTGCCCTTTCTAAAGTAGCAGAACAGTTATAAATACAGTTCATACCTGATTTTTGAAATTATTTCATTTTCTGAAGTCTCCTTGGGGGTGAACTATGTGAAAACTAGAATTTATGGTTCCAAGTATCATATTATTGGAATATTTCCCTTGTCCCCAGTTGCTCTAATGCTGTATTTGTTGATACATTTCATAGATGTATGTGCACATTCAGAATTTATTTCTGCTGGAGCACTTGGCCTTTTTCAGTTATTAACTTGTCTTATGGGAACTTCACAGAATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATCTATCTCTAGCTC</genome_strand>
        <mrna_strand>TAATCCCAAGTCTTGTAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGGCCTCAATCTATCTCTAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376880" ref_strand="+" ref_description="SGN-E376880 [TUS-19-F9]">
      <seq>taatcccaagcttggaaaactcagcttggtcaatcatggctacatctttcatttcactactttctatgtctgctgtacttgcaatgtgtttctttgttcgccgacatcatatacgaagagaacggccacgagcttctcgtgttcgcgaatttcatgggattagtagccgtttggttaaagctatgccaagtttgatatttacgtcagttgtggaggataattctacatcagtgacatgtgctatatgccttgaagattatactgctggagataagcttagaattcttccatgccggcacaaatttcacactatgtgtgttgatgcttggctgacatcatggagaaccttttgccctgtctgcaaacgggatgcaagaactagcactggtgatccaccagcatcagaatctacaccattgctttcttccagtctgcgatctgtatcttcagtgtcatctctgaggtcatcattagcatcatcagaagtgatacatataggcacaggagcatctcgatcaccttcagtttctcgttctcaatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="-" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96801" stop="94590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96501" g_stop="96202" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96201" i_stop="95133" i_length="1069">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.226" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95132" g_stop="94890" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="543" r_length="243" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="-" ref_id="SGN-E376880" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96501" e_stop="96202"/>
          <exon e_start="95132" e_stop="94890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACAGTAAGTTATCCTCATTCTCTCTTTGATTTTTGGTACCATGCCAGACTAATCAGTGATCATGGTTGATAAGCACTAATGTATCCCCTTTAAACATGAAACAATTTTAGTGTCACCACTAAGGAAACTTGACTTGTCTCCCACCAAAAGCTTATGGTAGTTTGACCTTACTGAAAATGCACCCAGCACCATCACTTCTTGCCACCCCACCTCTGTGGGTTCCTACTGGTGAGTGTGGTATTCTGTTTGTAAGGCGTTTCCATCAGCCTTTGCAATTCATCCATCTCTCAATCTTGTAAATTCCAGACAATAAATTCCCCCCTTTCGCGTCACCCTAATCTGTTGTACCATCGCCTCTTTCTAGCATGAAACTCTGAATAACTTGGGAGAGGTTGTCCTCCTATACTTCTATGCACCTATGTTGGTCCCAAAAGTTGACTCTACTTCCATTCCCTACTTCATAGGTAACTAAGCCATTGAAATCTAGCTAACCTTTGATAATGCTTTTCTAGACCTCCATTTCCCTTCTACGACTCCATGTTTTCGTGCTATACCTCCCTCCACAATGCGTGCTCTTCAACCCCAAATCTCCATAACTACTTCCCAGTAGTGCCTTGTTCAAAACTCTTAAGTTCTGTTGTTCCAGGGATATGAGGAAGATTCCAACTACTAATTCTTGGTCTCCGTTTACCGAGTCCCCCAAGCCTGTCATCATAGTTGTTTAGCTCCAACTTTGTATCATGATGTAGAGAAGATCATTCATCGCTGTATGCATATTCTTCTACCATCTTGACTTTTGCCCTTTCTAAAGTAGCAGAACAGTTATAAATACAGTTCATACCTGATTTTTGAAATTATTTCATTTTCTGAAGTCTCCTTGGGGGTGAACTATGTGAAAACTAGAATTTATGGTTCCAAGTATCATATTATTGGAATATTTCCCTTGTCCCCAGTTGCTCTAATGCTGTATTTGTTGATACATTTCATAGATGTATGTGCACATTCAGAATTTATTTCTGCTGGAGCACTTGGCCTTTTTCAGTTATTAACTTGTCTTATGGGAACTTCACAGAATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATCTA</genome_strand>
        <mrna_strand>TAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTTCTCAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231130" ref_strand="+" ref_description="SGN-E231130 [cLED-5-E11]">
      <seq>taatcccaagcttggaaaactcagcttggtcaatcatggctacatctttcatttcactactttctatgtctgctgtacttgcaatgtgtttctttgttcgccgacatcatatacgaagagaacggccacgagcttctcgtgttcgcgaatttcatgggattagtagccgtttggttaaagctatgccaagtttgatatttacgtcagttgtggaggataattctacatcagtgacatgtgctatatgccttgaagattatactgctggagataagcttagaattcttccatgccggcacaaatttcacactatgtgtgttgatgcttggctgacatcatggagaaccttttgccctgtctgcaaacgggatgcaagaactagcactggtgatccaccagcatcagaatctacaccattgctttcttccagtctgcgatctgtatcttcagtgtcatctctgaggtcatcattagcatcatcagaagtgatacatataggcacaggagcatctcgatcaccttcagtttctcgtcctcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="-" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96801" stop="94592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96501" g_stop="96202" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96201" i_stop="95133" i_length="1069">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.226" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95132" g_stop="94892" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="541" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="-" ref_id="SGN-E231130" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96501" e_stop="96202"/>
          <exon e_start="95132" e_stop="94892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACAGTAAGTTATCCTCATTCTCTCTTTGATTTTTGGTACCATGCCAGACTAATCAGTGATCATGGTTGATAAGCACTAATGTATCCCCTTTAAACATGAAACAATTTTAGTGTCACCACTAAGGAAACTTGACTTGTCTCCCACCAAAAGCTTATGGTAGTTTGACCTTACTGAAAATGCACCCAGCACCATCACTTCTTGCCACCCCACCTCTGTGGGTTCCTACTGGTGAGTGTGGTATTCTGTTTGTAAGGCGTTTCCATCAGCCTTTGCAATTCATCCATCTCTCAATCTTGTAAATTCCAGACAATAAATTCCCCCCTTTCGCGTCACCCTAATCTGTTGTACCATCGCCTCTTTCTAGCATGAAACTCTGAATAACTTGGGAGAGGTTGTCCTCCTATACTTCTATGCACCTATGTTGGTCCCAAAAGTTGACTCTACTTCCATTCCCTACTTCATAGGTAACTAAGCCATTGAAATCTAGCTAACCTTTGATAATGCTTTTCTAGACCTCCATTTCCCTTCTACGACTCCATGTTTTCGTGCTATACCTCCCTCCACAATGCGTGCTCTTCAACCCCAAATCTCCATAACTACTTCCCAGTAGTGCCTTGTTCAAAACTCTTAAGTTCTGTTGTTCCAGGGATATGAGGAAGATTCCAACTACTAATTCTTGGTCTCCGTTTACCGAGTCCCCCAAGCCTGTCATCATAGTTGTTTAGCTCCAACTTTGTATCATGATGTAGAGAAGATCATTCATCGCTGTATGCATATTCTTCTACCATCTTGACTTTTGCCCTTTCTAAAGTAGCAGAACAGTTATAAATACAGTTCATACCTGATTTTTGAAATTATTTCATTTTCTGAAGTCTCCTTGGGGGTGAACTATGTGAAAACTAGAATTTATGGTTCCAAGTATCATATTATTGGAATATTTCCCTTGTCCCCAGTTGCTCTAATGCTGTATTTGTTGATACATTTCATAGATGTATGTGCACATTCAGAATTTATTTCTGCTGGAGCACTTGGCCTTTTTCAGTTATTAACTTGTCTTATGGGAACTTCACAGAATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATC</genome_strand>
        <mrna_strand>TAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230943" ref_strand="+" ref_description="SGN-E230943 [cLED-5-C1]">
      <seq>taatcccaagcttggaaaactcagcttggtcaatcatggctacatctttcatttcactactttctatgtctgctgtacttgcaatgtgtttctttgttcgccgacatcatatacgaagagaacggccacgagcttctcgtgttcgcgaatttcatgggattagtagccgtttggataaagctatgccaagttcgatatttacgtcagttgtggaggataattctacatcagtgacatgtgctatatgccttgaagattatactgctggagataagcttagaattcttccatgccggcacaaatttcacactatgtgtgttgatgcttggctgacatcatggagaaccttttgccctgtctgcaaacgggatgcaagaactagcactggtgatccaccagcatcagaatctacaccattgctttcttccagtctgcgatctgtatcttcagtgacatctctgaggtcatcattagcatcatcagaagtgatacatataggcacaggagcatctcgatcaccttcagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="-" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96801" stop="94605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96501" g_stop="96202" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96201" i_stop="95133" i_length="1069">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.226" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95132" g_stop="94905" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="528" r_length="228" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="-" ref_id="SGN-E230943" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96501" e_stop="96202"/>
          <exon e_start="95132" e_stop="94905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACAGTAAGTTATCCTCATTCTCTCTTTGATTTTTGGTACCATGCCAGACTAATCAGTGATCATGGTTGATAAGCACTAATGTATCCCCTTTAAACATGAAACAATTTTAGTGTCACCACTAAGGAAACTTGACTTGTCTCCCACCAAAAGCTTATGGTAGTTTGACCTTACTGAAAATGCACCCAGCACCATCACTTCTTGCCACCCCACCTCTGTGGGTTCCTACTGGTGAGTGTGGTATTCTGTTTGTAAGGCGTTTCCATCAGCCTTTGCAATTCATCCATCTCTCAATCTTGTAAATTCCAGACAATAAATTCCCCCCTTTCGCGTCACCCTAATCTGTTGTACCATCGCCTCTTTCTAGCATGAAACTCTGAATAACTTGGGAGAGGTTGTCCTCCTATACTTCTATGCACCTATGTTGGTCCCAAAAGTTGACTCTACTTCCATTCCCTACTTCATAGGTAACTAAGCCATTGAAATCTAGCTAACCTTTGATAATGCTTTTCTAGACCTCCATTTCCCTTCTACGACTCCATGTTTTCGTGCTATACCTCCCTCCACAATGCGTGCTCTTCAACCCCAAATCTCCATAACTACTTCCCAGTAGTGCCTTGTTCAAAACTCTTAAGTTCTGTTGTTCCAGGGATATGAGGAAGATTCCAACTACTAATTCTTGGTCTCCGTTTACCGAGTCCCCCAAGCCTGTCATCATAGTTGTTTAGCTCCAACTTTGTATCATGATGTAGAGAAGATCATTCATCGCTGTATGCATATTCTTCTACCATCTTGACTTTTGCCCTTTCTAAAGTAGCAGAACAGTTATAAATACAGTTCATACCTGATTTTTGAAATTATTTCATTTTCTGAAGTCTCCTTGGGGGTGAACTATGTGAAAACTAGAATTTATGGTTCCAAGTATCATATTATTGGAATATTTCCCTTGTCCCCAGTTGCTCTAATGCTGTATTTGTTGATACATTTCATAGATGTATGTGCACATTCAGAATTTATTTCTGCTGGAGCACTTGGCCTTTTTCAGTTATTAACTTGTCTTATGGGAACTTCACAGAATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTT</genome_strand>
        <mrna_strand>TAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGATAAAGCTATGCCAAGTTCGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGACATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703589" ref_strand="+" ref_description="SGN-E703589 [FA21DF11]">
      <seq>tgttgatatgttttgtgtctttgacggcttctcgagctactggtagtgtgattttgattggaaataacaggactttgtcttttgaagatattgaagctaattttgctccctcaccaaagggttcaggaaaatgtgggaggttgtatattgcggagcctttggatgcctgctcaaccttgactaacaagattgaaccaactaataacttcacaaaagaaccatttgttctgataatcaggggtggatgtagctttgaagataaagttagaaaagcacaagctgcaggttttaaagcagccattatctatgatagtggatatggagatataattgcaatggcaggaacctctgctggtgtgaagatactggcagttttcatttcaaaagcttctggagaagcactcacacagtatgctggctcggatacggaagtatggttaatcccaagcttggaaaactcagcttggtcaatcatggctacatctttcatttcactactttctatgtctgctgtacttgcaatgtgtttctttgttcgccgacatcatatacgaagagaacggccaccttctcgtgttcgcgaatttcatgggattagtagccgtttggttaaagctatgccaagtttgatatttacgtcagttgtggaggataattctacatcagtgacatgtgctatatgccttgaagattatactgctggagataagcttagaattcttccatgccggcacaaatttcacactatgtgtgttgatgcttggctgacatcatggagaaccttttgccctgtctgncaaacggatgcaagaactagcactggtgatccaccagcatcagaatctacaccattgctttcttccagtctgcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="-" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99390" stop="94695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99090" g_stop="98986" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98985" i_stop="98450" i_length="536">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98449" g_stop="98219" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="336" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98218" i_stop="96604" i_length="1615">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96603" g_stop="96202" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="735" r_length="399" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96201" i_stop="95133" i_length="1069">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.226" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95132" g_stop="94995" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="873" r_length="138" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="-" ref_id="SGN-E703589" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99090" e_stop="98986"/>
          <exon e_start="98449" e_stop="98219"/>
          <exon e_start="96603" e_stop="96202"/>
          <exon e_start="95132" e_stop="94995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGATATGTTTTGTGTCTTTGACGGCTTCTCGAGCTACTGGTAGTGTGATTTTGATTGGAAATAACAGGACTTTGTCTTTTGAAGATATTGAAGCTAATTTTGGTGAGTTGGCTTGCTTCCTCCCAAAACTTCTTTTTGTATTCATTTTTTTGTGTAATGAAATGTGTGATTAGTGCTTTTGATGAATTTTGGGAATTGGGTTTTGCTTAATTTATTTTATTCATAAGCTGTTTGAACTGATCTGCTTTTTTTGGGGTGGGAGGAATTGATCATATTTGTTGTTAATGGCTTTTTCTGGGGGAATAGAAGTTTTCATCTTGGAAATGTCACCTGTCATATTTTGCAAGTTCTTGTTTTTCTGTTGAAATCTTCAAGGAATCTTTACTTGGATCATGAGTCCATGTATGAATGCTGTATTAATAACTTGCATTTACAGCTGAAAATATGTTGTTATTTGTCATGGATTTGGTTCATTGTAATTGATTTATGAGGTTTAGTGATGGTGATGTTTCTGTTTTTGCTCAAAATGTTGAGTGTTGTGATATAACAAAGGTTTTCTATACATTTACTGTTGGCACGACTTTTTTGCGGGCTTTGTTTATGCTAATGTACTAATTCGACCTTGCTTATAATTTCAGCTCCCTCACCAAAGGGTTCAGGAAAATGTGGGAGGTTGTATATTGCGGAGCCTTTGGATGCCTGCTCAACCTTGACTAACAAGATTGAACCAACTAATAACTTCACAAAAGAACCATTTGTTCTGATAATCAGGGGTGGATGTAGCTTTGAAGATAAAGTTAGAAAAGCACAAGCTGCAGGTTTTAAAGCAGCCATTATCTATGATAGTGGATATGGAGATATAATTGCAAGTAATGAACTCTTCCATTGTACAGTTTCTATATTTATTTCACTTGCTCAAAAAAATTAAGTTTTCTTTCTTTCTTTCAATTATTCATTTAGTTCGTTCTAACTTATATTATGTTTGATGGTAGTTAACGTATCAAGTGGTATAACCTGAAATCATATCTTGAGGACGCACTAAAGTGCCCATGGTATCATCATGAACTTGCAAACAGAAACTGTAAAAGCCTAGGAATATACATGCCCAATTGAGATGGGATATGATTACATCACAATTGCATAAGGACACTATCTAATAGATCGTTGTGAGTAGTTGAATCATAATCTTTAGCGTAAACATGGCTGCATGTGCAGCATTCTTGAACTCTCTGATTGCAAGTTTTAGAATAAGGTTGAATATATTTCTGATATTAATCATTTAAGTATCAATAGTTCTACTAACTGATTTTAGATCTGGAAAAATAAGAAAATTAGTCTGCAAAATAGTTTTGACAAAAGCTTTTATTCGTATCTATCTTACTGGCAAAATGACTTCTTGAACTATTGCAAGGGAAATCTCTTGCAGATAGCTGTCACACTCTCTCAGCTGATAATAGTTTTGATTCATTGGGGTAGAAGTAAAATAATTCCTTCAAAATAGATATTTCTGGTACTATTTGTTCCTTTTTATTTTATTAGGTAAAGAAATAAGCGGTCGGATTAACAAGATTTTTTTCTTGTTCTTTTTGTACTGTTAAGGTGATTAGTTAAAATTGACATTGAACTCTTTACTCCTTGCACAAGCCAGCTATCCAACATTCTGCAATTTTGACGCAAACCTGCTGGTTTGCTTTTAATCTCCTAATGCTCTGTTTATCCCATATAAAATGTTGATGAAACTTCTGAACTGTCAATTGATCAACCCAACTATGCTTCCTTCTCTAACTAGTTATTCATGAAGACTGATAGGACGACATATAAAAGGGTTAATTGGATGTTCAATCTGGTGAAGAGAAATTGATCCATGTTTGTCTTCTTTGATTGGCTTGAGCCAGCATGATCCAACAATGGTGCATCTGAAATGTTCATATCAGAAAACTGACAAACTAGCAGAGCAGTTTATTACATAGGAGCGGGGGTTTTACCCTGTGCGCACCCACAGGGTAGCGGCCGTGGGTTTGCCTAGTCATAACAAAGAAAACTAGCAGATTAGTTTTGCCTACCCCCTTCCACTAGGAAAATGAAAGGAATTAGGCACAATTTCCCCCCTAGACTATGACCGAAGTCCTAGAGACACACCTAAACTTAACTAGGGTCCTATTTACCCCCAGCACTCAGTTGTTCCGTGTTTTTGTGCACCTTTTGTGCTGATAACTCATAAAACTTTTGTCAGACTTCAAAAACCATCTTCATCTCTTGCTTTTGAATGATTTATAATTGTTGATTTTTGAGTTAAGTTACCAAATTAAAAAATTGTTGATTTTGAGCAAGTAGCTTCACCTCTTCAAAAATAGTTCCGGGTGCATGTCGGATCCTCCAAAAGTAATGCATTTTTAGAGGATCCGACATGGGTGCGATAGTATCTTGAAGAGTCTGATCATCGTTATTTTGACAAGCAAAGGTTTGATCAGACACATGATACAGTGGCAGGAACCTCTGCTGGTGTGAAGATACTGGCAGTTTTCATTTCAAAAGCTTCTGGAGAAGCACTCACACAGTATGCTGGCTCGGATACGGAAGTATGGTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACAGTAAGTTATCCTCATTCTCTCTTTGATTTTTGGTACCATGCCAGACTAATCAGTGATCATGGTTGATAAGCACTAATGTATCCCCTTTAAACATGAAACAATTTTAGTGTCACCACTAAGGAAACTTGACTTGTCTCCCACCAAAAGCTTATGGTAGTTTGACCTTACTGAAAATGCACCCAGCACCATCACTTCTTGCCACCCCACCTCTGTGGGTTCCTACTGGTGAGTGTGGTATTCTGTTTGTAAGGCGTTTCCATCAGCCTTTGCAATTCATCCATCTCTCAATCTTGTAAATTCCAGACAATAAATTCCCCCCTTTCGCGTCACCCTAATCTGTTGTACCATCGCCTCTTTCTAGCATGAAACTCTGAATAACTTGGGAGAGGTTGTCCTCCTATACTTCTATGCACCTATGTTGGTCCCAAAAGTTGACTCTACTTCCATTCCCTACTTCATAGGTAACTAAGCCATTGAAATCTAGCTAACCTTTGATAATGCTTTTCTAGACCTCCATTTCCCTTCTACGACTCCATGTTTTCGTGCTATACCTCCCTCCACAATGCGTGCTCTTCAACCCCAAATCTCCATAACTACTTCCCAGTAGTGCCTTGTTCAAAACTCTTAAGTTCTGTTGTTCCAGGGATATGAGGAAGATTCCAACTACTAATTCTTGGTCTCCGTTTACCGAGTCCCCCAAGCCTGTCATCATAGTTGTTTAGCTCCAACTTTGTATCATGATGTAGAGAAGATCATTCATCGCTGTATGCATATTCTTCTACCATCTTGACTTTTGCCCTTTCTAAAGTAGCAGAACAGTTATAAATACAGTTCATACCTGATTTTTGAAATTATTTCATTTTCTGAAGTCTCCTTGGGGGTGAACTATGTGAAAACTAGAATTTATGGTTCCAAGTATCATATTATTGGAATATTTCCCTTGTCCCCAGTTGCTCTAATGCTGTATTTGTTGATACATTTCATAGATGTATGTGCACATTCAGAATTTATTTCTGCTGGAGCACTTGGCCTTTTTCAGTTATTAACTTGTCTTATGGGAACTTCACAGAATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGAT</genome_strand>
        <mrna_strand>TGTTGATATGTTTTGTGTCTTTGACGGCTTCTCGAGCTACTGGTAGTGTGATTTTGATTGGAAATAACAGGACTTTGTCTTTTGAAGATATTGAAGCTAATTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCTCACCAAAGGGTTCAGGAAAATGTGGGAGGTTGTATATTGCGGAGCCTTTGGATGCCTGCTCAACCTTGACTAACAAGATTGAACCAACTAATAACTTCACAAAAGAACCATTTGTTCTGATAATCAGGGGTGGATGTAGCTTTGAAGATAAAGTTAGAAAAGCACAAGCTGCAGGTTTTAAAGCAGCCATTATCTATGATAGTGGATATGGAGATATAATTGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGGAACCTCTGCTGGTGTGAAGATACTGGCAGTTTTCATTTCAAAAGCTTCTGGAGAAGCACTCACACAGTATGCTGGCTCGGATACGGAAGTATGGTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCAC---CTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGNCAAACGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E431329" ref_strand="+" ref_description="SGN-E431329 [STM-55-E2]">
      <seq>gcctgctcaaccttgactaacaagattgaaccaactaataacttcacaaaagaaccatttgtgctgataatcaggggtggatgtagctttgaggataaagttagaaaagcacaagctgcaggttttaaagcagccattatctatgatagtggatatggtgatataattgcaatggcaggaacctctgctggtgtgaagatactggcagtgttcatttcaaaagcttctggagaagcactcacaaagtatgctggccctgatatggaagtatggttaatcccaagcttggaaaactcagcttggtcaatcatggctacatctttcatttcactacttgctatgtctgctgtacttgcaatgtgtttctttgttcgccgacatcatattcgaagagaacagccccgagcttctcgtgttcgtgaatttcatgggattagtagtcgtttggttaaagctatgccaagtttgatatttacatcagttgtggaggataattctacatcagttacatgtgctatatgccttgaagattatactgttggagataagcttagaattcttccatgccggcacaaatttcacactatgtgtgttgatgcttggctgacatcatggagaaccttttgccccgtctgcaaacgggatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="-" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98690" stop="94759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98390" g_stop="98219" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98218" i_stop="96604" i_length="1615">
            <donor d_prob="0.865" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96603" g_stop="96202" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="574" r_length="402" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96201" i_stop="95133" i_length="1069">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.226" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95132" g_stop="95059" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="648" r_length="74" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="-" ref_id="SGN-E431329" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E431329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98390" e_stop="98219"/>
          <exon e_start="96603" e_stop="96202"/>
          <exon e_start="95132" e_stop="95059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTGCTCAACCTTGACTAACAAGATTGAACCAACTAATAACTTCACAAAAGAACCATTTGTTCTGATAATCAGGGGTGGATGTAGCTTTGAAGATAAAGTTAGAAAAGCACAAGCTGCAGGTTTTAAAGCAGCCATTATCTATGATAGTGGATATGGAGATATAATTGCAAGTAATGAACTCTTCCATTGTACAGTTTCTATATTTATTTCACTTGCTCAAAAAAATTAAGTTTTCTTTCTTTCTTTCAATTATTCATTTAGTTCGTTCTAACTTATATTATGTTTGATGGTAGTTAACGTATCAAGTGGTATAACCTGAAATCATATCTTGAGGACGCACTAAAGTGCCCATGGTATCATCATGAACTTGCAAACAGAAACTGTAAAAGCCTAGGAATATACATGCCCAATTGAGATGGGATATGATTACATCACAATTGCATAAGGACACTATCTAATAGATCGTTGTGAGTAGTTGAATCATAATCTTTAGCGTAAACATGGCTGCATGTGCAGCATTCTTGAACTCTCTGATTGCAAGTTTTAGAATAAGGTTGAATATATTTCTGATATTAATCATTTAAGTATCAATAGTTCTACTAACTGATTTTAGATCTGGAAAAATAAGAAAATTAGTCTGCAAAATAGTTTTGACAAAAGCTTTTATTCGTATCTATCTTACTGGCAAAATGACTTCTTGAACTATTGCAAGGGAAATCTCTTGCAGATAGCTGTCACACTCTCTCAGCTGATAATAGTTTTGATTCATTGGGGTAGAAGTAAAATAATTCCTTCAAAATAGATATTTCTGGTACTATTTGTTCCTTTTTATTTTATTAGGTAAAGAAATAAGCGGTCGGATTAACAAGATTTTTTTCTTGTTCTTTTTGTACTGTTAAGGTGATTAGTTAAAATTGACATTGAACTCTTTACTCCTTGCACAAGCCAGCTATCCAACATTCTGCAATTTTGACGCAAACCTGCTGGTTTGCTTTTAATCTCCTAATGCTCTGTTTATCCCATATAAAATGTTGATGAAACTTCTGAACTGTCAATTGATCAACCCAACTATGCTTCCTTCTCTAACTAGTTATTCATGAAGACTGATAGGACGACATATAAAAGGGTTAATTGGATGTTCAATCTGGTGAAGAGAAATTGATCCATGTTTGTCTTCTTTGATTGGCTTGAGCCAGCATGATCCAACAATGGTGCATCTGAAATGTTCATATCAGAAAACTGACAAACTAGCAGAGCAGTTTATTACATAGGAGCGGGGGTTTTACCCTGTGCGCACCCACAGGGTAGCGGCCGTGGGTTTGCCTAGTCATAACAAAGAAAACTAGCAGATTAGTTTTGCCTACCCCCTTCCACTAGGAAAATGAAAGGAATTAGGCACAATTTCCCCCCTAGACTATGACCGAAGTCCTAGAGACACACCTAAACTTAACTAGGGTCCTATTTACCCCCAGCACTCAGTTGTTCCGTGTTTTTGTGCACCTTTTGTGCTGATAACTCATAAAACTTTTGTCAGACTTCAAAAACCATCTTCATCTCTTGCTTTTGAATGATTTATAATTGTTGATTTTTGAGTTAAGTTACCAAATTAAAAAATTGTTGATTTTGAGCAAGTAGCTTCACCTCTTCAAAAATAGTTCCGGGTGCATGTCGGATCCTCCAAAAGTAATGCATTTTTAGAGGATCCGACATGGGTGCGATAGTATCTTGAAGAGTCTGATCATCGTTATTTTGACAAGCAAAGGTTTGATCAGACACATGATACAGTGGCAGGAACCTCTGCTGGTGTGAAGATACTGGCAGTTTTCATTTCAAAAGCTTCTGGAGAAGCACTCACACAGTATGCTGGCTCGGATACGGAAGTATGGTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACAGTAAGTTATCCTCATTCTCTCTTTGATTTTTGGTACCATGCCAGACTAATCAGTGATCATGGTTGATAAGCACTAATGTATCCCCTTTAAACATGAAACAATTTTAGTGTCACCACTAAGGAAACTTGACTTGTCTCCCACCAAAAGCTTATGGTAGTTTGACCTTACTGAAAATGCACCCAGCACCATCACTTCTTGCCACCCCACCTCTGTGGGTTCCTACTGGTGAGTGTGGTATTCTGTTTGTAAGGCGTTTCCATCAGCCTTTGCAATTCATCCATCTCTCAATCTTGTAAATTCCAGACAATAAATTCCCCCCTTTCGCGTCACCCTAATCTGTTGTACCATCGCCTCTTTCTAGCATGAAACTCTGAATAACTTGGGAGAGGTTGTCCTCCTATACTTCTATGCACCTATGTTGGTCCCAAAAGTTGACTCTACTTCCATTCCCTACTTCATAGGTAACTAAGCCATTGAAATCTAGCTAACCTTTGATAATGCTTTTCTAGACCTCCATTTCCCTTCTACGACTCCATGTTTTCGTGCTATACCTCCCTCCACAATGCGTGCTCTTCAACCCCAAATCTCCATAACTACTTCCCAGTAGTGCCTTGTTCAAAACTCTTAAGTTCTGTTGTTCCAGGGATATGAGGAAGATTCCAACTACTAATTCTTGGTCTCCGTTTACCGAGTCCCCCAAGCCTGTCATCATAGTTGTTTAGCTCCAACTTTGTATCATGATGTAGAGAAGATCATTCATCGCTGTATGCATATTCTTCTACCATCTTGACTTTTGCCCTTTCTAAAGTAGCAGAACAGTTATAAATACAGTTCATACCTGATTTTTGAAATTATTTCATTTTCTGAAGTCTCCTTGGGGGTGAACTATGTGAAAACTAGAATTTATGGTTCCAAGTATCATATTATTGGAATATTTCCCTTGTCCCCAGTTGCTCTAATGCTGTATTTGTTGATACATTTCATAGATGTATGTGCACATTCAGAATTTATTTCTGCTGGAGCACTTGGCCTTTTTCAGTTATTAACTTGTCTTATGGGAACTTCACAGAATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCA</genome_strand>
        <mrna_strand>GCCTGCTCAACCTTGACTAACAAGATTGAACCAACTAATAACTTCACAAAAGAACCATTTGTGCTGATAATCAGGGGTGGATGTAGCTTTGAGGATAAAGTTAGAAAAGCACAAGCTGCAGGTTTTAAAGCAGCCATTATCTATGATAGTGGATATGGTGATATAATTGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGGAACCTCTGCTGGTGTGAAGATACTGGCAGTGTTCATTTCAAAAGCTTCTGGAGAAGCACTCACAAAGTATGCTGGCCCTGATATGGAAGTATGGTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTGCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATTCGAAGAGAACAGCCCCGAGCTTCTCGTGTTCGTGAATTTCATGGGATTAGTAGTCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACATCAGTTGTGGAGGATAATTCTACATCAGTTACATGTGCTATATGCCTTGAAGATTATACTGTTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCCGTCTGCAAACGGGATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233613" ref_strand="+" ref_description="SGN-E233613 [cLED-14-I1]">
      <seq>gttaatcccaagcttggaaaactcagctaggtcaatcatggctacatctttcatttcactactttctatgtctgctgtacttgcaatgcgtctctttgttcgccgacatcatatacgaagagaacggccacgagcttctcgtgttcgcgaatgtcatgggattagtagccgtttggttaaagctatgccaagtctgatatttacgtcagttgtggaggataatactacatcagagacatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="-" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96803" stop="95963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96503" g_stop="96263" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="-" ref_id="SGN-E233613" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>241</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96503" e_stop="96263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGT</genome_strand>
        <mrna_strand>GTTAATCCCAAGCTTGGAAAACTCAGCTAGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGCGTCTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATGTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTCTGATATTTACGTCAGTTGTGGAGGATAATACTACATCAGAGACATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463913" ref_strand="+" ref_description="SGN-E463913 [cPRO-16-I14]">
      <seq>gcctgctcaaccttgactaacaagattgaaccaactaataacttcacaaaagaaccatttgtgctgataatcaggggtggatgtagctttgaggataaagttagaaaagcacaagctgcaggttttaaagcagccattatctatgatagtggatatggtgatataattgcaatggcaggaacctctgctggtgtgaagatactggcagtgttcatttcaaaagcttctggagaagcactcacaaagtatgctggccctgatatggaagtatggttaatcccaagcttggaaaactcagcttggtcaatcatggctacatctttcatttcactacttgctatgtctgctgtacttgcaatgtgtttctttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0177K13-g5ZIf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0177K13.2" temp_strand="-" temp_description="C06HBa0177K13.2  AC211059.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0177K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98690" stop="96104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98390" g_stop="98219" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98218" i_stop="96604" i_length="1615">
            <donor d_prob="0.865" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96603" g_stop="96404" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="372" r_length="200" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0177K13.2" gen_strand="-" ref_id="SGN-E463913" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0177K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98390" e_stop="98219"/>
          <exon e_start="96603" e_stop="96404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTGCTCAACCTTGACTAACAAGATTGAACCAACTAATAACTTCACAAAAGAACCATTTGTTCTGATAATCAGGGGTGGATGTAGCTTTGAAGATAAAGTTAGAAAAGCACAAGCTGCAGGTTTTAAAGCAGCCATTATCTATGATAGTGGATATGGAGATATAATTGCAAGTAATGAACTCTTCCATTGTACAGTTTCTATATTTATTTCACTTGCTCAAAAAAATTAAGTTTTCTTTCTTTCTTTCAATTATTCATTTAGTTCGTTCTAACTTATATTATGTTTGATGGTAGTTAACGTATCAAGTGGTATAACCTGAAATCATATCTTGAGGACGCACTAAAGTGCCCATGGTATCATCATGAACTTGCAAACAGAAACTGTAAAAGCCTAGGAATATACATGCCCAATTGAGATGGGATATGATTACATCACAATTGCATAAGGACACTATCTAATAGATCGTTGTGAGTAGTTGAATCATAATCTTTAGCGTAAACATGGCTGCATGTGCAGCATTCTTGAACTCTCTGATTGCAAGTTTTAGAATAAGGTTGAATATATTTCTGATATTAATCATTTAAGTATCAATAGTTCTACTAACTGATTTTAGATCTGGAAAAATAAGAAAATTAGTCTGCAAAATAGTTTTGACAAAAGCTTTTATTCGTATCTATCTTACTGGCAAAATGACTTCTTGAACTATTGCAAGGGAAATCTCTTGCAGATAGCTGTCACACTCTCTCAGCTGATAATAGTTTTGATTCATTGGGGTAGAAGTAAAATAATTCCTTCAAAATAGATATTTCTGGTACTATTTGTTCCTTTTTATTTTATTAGGTAAAGAAATAAGCGGTCGGATTAACAAGATTTTTTTCTTGTTCTTTTTGTACTGTTAAGGTGATTAGTTAAAATTGACATTGAACTCTTTACTCCTTGCACAAGCCAGCTATCCAACATTCTGCAATTTTGACGCAAACCTGCTGGTTTGCTTTTAATCTCCTAATGCTCTGTTTATCCCATATAAAATGTTGATGAAACTTCTGAACTGTCAATTGATCAACCCAACTATGCTTCCTTCTCTAACTAGTTATTCATGAAGACTGATAGGACGACATATAAAAGGGTTAATTGGATGTTCAATCTGGTGAAGAGAAATTGATCCATGTTTGTCTTCTTTGATTGGCTTGAGCCAGCATGATCCAACAATGGTGCATCTGAAATGTTCATATCAGAAAACTGACAAACTAGCAGAGCAGTTTATTACATAGGAGCGGGGGTTTTACCCTGTGCGCACCCACAGGGTAGCGGCCGTGGGTTTGCCTAGTCATAACAAAGAAAACTAGCAGATTAGTTTTGCCTACCCCCTTCCACTAGGAAAATGAAAGGAATTAGGCACAATTTCCCCCCTAGACTATGACCGAAGTCCTAGAGACACACCTAAACTTAACTAGGGTCCTATTTACCCCCAGCACTCAGTTGTTCCGTGTTTTTGTGCACCTTTTGTGCTGATAACTCATAAAACTTTTGTCAGACTTCAAAAACCATCTTCATCTCTTGCTTTTGAATGATTTATAATTGTTGATTTTTGAGTTAAGTTACCAAATTAAAAAATTGTTGATTTTGAGCAAGTAGCTTCACCTCTTCAAAAATAGTTCCGGGTGCATGTCGGATCCTCCAAAAGTAATGCATTTTTAGAGGATCCGACATGGGTGCGATAGTATCTTGAAGAGTCTGATCATCGTTATTTTGACAAGCAAAGGTTTGATCAGACACATGATACAGTGGCAGGAACCTCTGCTGGTGTGAAGATACTGGCAGTTTTCATTTCAAAAGCTTCTGGAGAAGCACTCACACAGTATGCTGGCTCGGATACGGAAGTATGGTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTT</genome_strand>
        <mrna_strand>GCCTGCTCAACCTTGACTAACAAGATTGAACCAACTAATAACTTCACAAAAGAACCATTTGTGCTGATAATCAGGGGTGGATGTAGCTTTGAGGATAAAGTTAGAAAAGCACAAGCTGCAGGTTTTAAAGCAGCCATTATCTATGATAGTGGATATGGTGATATAATTGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGGAACCTCTGCTGGTGTGAAGATACTGGCAGTGTTCATTTCAAAAGCTTCTGGAGAAGCACTCACAAAGTATGCTGGCCCTGATATGGAAGTATGGTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTGCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>129</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="23164" PGL_stop="23654"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23164" e_stop="23654"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="23164" e_stop="23654" e_length="491"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23164" stop="23650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23224" stop="23654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426861" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAACCAAGAAGATGCAAGATTTACAAATATGGCATTTGAGCTTACAAAAAAATCTCTGGCTAACTATACAAACTATCTAAGCCAGAACTATTGAGTTAGTAAAATCCTGAAGTTGTTCTGCATTAACAGTAGGATACAAGTTGGACCAAATAAACAAATTTGCAATGCACCTAGTCTTCAAAATACCTAAGGCAGTTGATTCTCCATTGAAACATCTGTTGTTCCTCTCTAACCAAATACACCAAAAAACACAACCAGGTATCATAATCAAATCTTCTTGATAGCTTTGTCAACTTTCCATAGGCTCCAACTCTCATATGCATCCGTAACTGTGAGGGGTGTGGTCCAACTGATGCCAGAGAGACAAAACAAATACTCCATAATTCTAAGGCCACATCACAATGAAGAAGAAGGTGTCTGGGGGTTTCAGCCTCTTTTTTGCACATATAGCATCTGTTTGGGAACTGGATTTTTCTTTTCTTTATGTTG</gDNA_template>
            <first_frame> K  N  Q  E  D  A  R  F  T  N  M  A  F  E  L  T  K  K  S  L  A  N  Y  T  N  Y  L  S  Q  N  Y  *  V  S  K  I  L  K  L  F  C  I  N  S  R  I  Q  V  G  P  N  K  Q  I  C  N  A  P  S  L  Q  N  T  *  G  S  *  F  S  I  E  T  S  V  V  P  L  *  P  N  T  P  K  N  T  T  R  Y  H  N  Q  I  F  L  I  A  L  S  T  F  H  R  L  Q  L  S  Y  A  S  V  T  V  R  G  V  V  Q  L  M  P  E  R  Q  N  K  Y  S  I  I  L  R  P  H  H  N  E  E  E  G  V  W  G  F  Q  P  L  F  C  T  Y  S  I  C  L  G  T  G  F  F  F  S  L  C   </first_frame>
            <second_frame>  R  T  K  K  M  Q  D  L  Q  I  W  H  L  S  L  Q  K  N  L  W  L  T  I  Q  T  I  *  A  R  T  I  E  L  V  K  S  *  S  C  S  A  L  T  V  G  Y  K  L  D  Q  I  N  K  F  A  M  H  L  V  F  K  I  P  K  A  V  D  S  P  L  K  H  L  L  F  L  S  N  Q  I  H  Q  K  T  Q  P  G  I  I  I  K  S  S  *  *  L  C  Q  L  S  I  G  S  N  S  H  M  H  P  *  L  *  G  V  W  S  N  *  C  Q  R  D  K  T  N  T  P  *  F  *  G  H  I  T  M  K  K  K  V  S  G  G  F  S  L  F  F  A  H  I  A  S  V  W  E  L  D  F  S  F  L  Y  V  </second_frame>
            <third_frame>   E  P  R  R  C  K  I  Y  K  Y  G  I  *  A  Y  K  K  I  S  G  *  L  Y  K  L  S  K  P  E  L  L  S  *  *  N  P  E  V  V  L  H  *  Q  *  D  T  S  W  T  K  *  T  N  L  Q  C  T  *  S  S  K  Y  L  R  Q  L  I  L  H  *  N  I  C  C  S  S  L  T  K  Y  T  K  K  H  N  Q  V  S  *  S  N  L  L  D  S  F  V  N  F  P  *  A  P  T  L  I  C  I  R  N  C  E  G  C  G  P  T  D  A  R  E  T  K  Q  I  L  H  N  S  K  A  T  S  Q  *  R  R  R  C  L  G  V  S  A  S  F  L  H  I  *  H  L  F  G  N  W  I  F  L  F  F  M  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0177K13.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23398" stop="23652"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PNTPKNTTRYHNQIFLIALSTFHRLQLSYASVTVRGVVQLMPERQNKYSIILRPHHNEEEGVWGFQPLFCTYSICLGTGFFFSLC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="44164" PGL_stop="44763"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44164" e_stop="44763"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44164" e_stop="44763" e_length="600"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44164" stop="44763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315755" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCACTTCCTAGGGAGTCTGAAGTTACCAGTGTTGATGCTGAAGAAGAACTAGTAGAATCTTTGATTTCAGTTTCTTTATCAGATGTCCATGATTCCCTGGTTCCTAAAGTTGAACCAGATAACAATATTGAAACATTGCCGGCTATCGGATCTGATGATTTTGTGAGGGTAACATCTGATGAGGCTAAATTTTCCCCAAGAGCAATGACAGCTCCCAGGGGGGGAAATACAGTATGTCTGCAAGAGGCATCAAATAGCAGAGAGAAAAGTTGTGCAGTGTGTGATTTGTCAAAAATGTCTCCCAAGGTTCAAACTGTTGCTGATCCGATCTCCACTAAGTTGGCTGCCATTCATCATGTATCTCAAGCTATTAAGTCTCTAAGGTGGAAACGTCAACTGCAAAGCAACAGAATGGATCTGCAGAATAGTGCTAAAAATCAGGATGAGCTGCCTTCAGCTCCGAGTTTTTCTGTCTGTGCATGTGGGGATACCGACTGTATTGAAGTTTGTGATATTCGAGAATGGCTTCCGACTTCAAAATTGGATGATAAGTTGTGGAAACTAGTTCTATTGCTTGGAGAATCATATTTGGCGCTTGG</gDNA_template>
            <first_frame> S  T  S  *  G  V  *  S  Y  Q  C  *  C  *  R  R  T  S  R  I  F  D  F  S  F  F  I  R  C  P  *  F  P  G  S  *  S  *  T  R  *  Q  Y  *  N  I  A  G  Y  R  I  *  *  F  C  E  G  N  I  *  *  G  *  I  F  P  K  S  N  D  S  S  Q  G  G  K  Y  S  M  S  A  R  G  I  K  *  Q  R  E  K  L  C  S  V  *  F  V  K  N  V  S  Q  G  S  N  C  C  *  S  D  L  H  *  V  G  C  H  S  S  C  I  S  S  Y  *  V  S  K  V  E  T  S  T  A  K  Q  Q  N  G  S  A  E  *  C  *  K  S  G  *  A  A  F  S  S  E  F  F  C  L  C  M  W  G  Y  R  L  Y  *  S  L  *  Y  S  R  M  A  S  D  F  K  I  G  *  *  V  V  E  T  S  S  I  A  W  R  I  I  F  G  A  W </first_frame>
            <second_frame>  A  L  P  R  E  S  E  V  T  S  V  D  A  E  E  E  L  V  E  S  L  I  S  V  S  L  S  D  V  H  D  S  L  V  P  K  V  E  P  D  N  N  I  E  T  L  P  A  I  G  S  D  D  F  V  R  V  T  S  D  E  A  K  F  S  P  R  A  M  T  A  P  R  G  G  N  T  V  C  L  Q  E  A  S  N  S  R  E  K  S  C  A  V  C  D  L  S  K  M  S  P  K  V  Q  T  V  A  D  P  I  S  T  K  L  A  A  I  H  H  V  S  Q  A  I  K  S  L  R  W  K  R  Q  L  Q  S  N  R  M  D  L  Q  N  S  A  K  N  Q  D  E  L  P  S  A  P  S  F  S  V  C  A  C  G  D  T  D  C  I  E  V  C  D  I  R  E  W  L  P  T  S  K  L  D  D  K  L  W  K  L  V  L  L  L  G  E  S  Y  L  A  L   </second_frame>
            <third_frame>   H  F  L  G  S  L  K  L  P  V  L  M  L  K  K  N  *  *  N  L  *  F  Q  F  L  Y  Q  M  S  M  I  P  W  F  L  K  L  N  Q  I  T  I  L  K  H  C  R  L  S  D  L  M  I  L  *  G  *  H  L  M  R  L  N  F  P  Q  E  Q  *  Q  L  P  G  G  E  I  Q  Y  V  C  K  R  H  Q  I  A  E  R  K  V  V  Q  C  V  I  C  Q  K  C  L  P  R  F  K  L  L  L  I  R  S  P  L  S  W  L  P  F  I  M  Y  L  K  L  L  S  L  *  G  G  N  V  N  C  K  A  T  E  W  I  C  R  I  V  L  K  I  R  M  S  C  L  Q  L  R  V  F  L  S  V  H  V  G  I  P  T  V  L  K  F  V  I  F  E  N  G  F  R  L  Q  N  W  M  I  S  C  G  N  *  F  Y  C  L  E  N  H  I  W  R  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0177K13.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44165" stop="44761"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALPRESEVTSVDAEEELVESLISVSLSDVHDSLVPKVEPDNNIETLPAIGSDDFVRVTSDEAKFSPRAMTAPRGGNTVCLQEASNSREKSCAVCDLSKMSPKVQTVADPISTKLAAIHHVSQAIKSLRWKRQLQSNRMDLQNSAKNQDELPSAPSFSVCACGDTDCIEVCDIREWLPTSKLDDKLWKLVLLLGESYLAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="44828" PGL_stop="45270"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44828" e_stop="45270"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="44828" e_stop="45270" e_length="443"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44828" stop="45270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44828" stop="45200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471976" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTATGGATCAATGCCTCAACATCGACAAGACTCAAAATTTGTTTCTTCCATGTTAGTTTGTTCATTACCTGAGGTCGAAAGTGATGATAAAAGTGAAAAGGCTGGGTCTTCACTATCTGATGGTTGTTTCATGTATGATCAGTCATCTGACAGCTACCTCTTTTGGGCCAAGGCTTGGACACTAGTTGGGGACGTGTATGTAGAATTCCATTCGACAGATGGTGATAAGATGCCAGTACAGTCAGAGCAAAAGCCCTTAACTAAAGAGTTGAAGATGTCATCTGAAGTTTTGAGGGAGGTTGAGAGGCTCAAGAAGACGCTTGGACAGTCTAGTCAAAACTGCAGCTCATGTTCTTTATTGAACTGCAGCTGTCAGAGTGATAGGGCCAGCAGTGGAAGCAGTGCTAGCAGCAGTAATAGAGATTCACGTTCAAAAAGTTA</gDNA_template>
            <first_frame> V  Y  G  S  M  P  Q  H  R  Q  D  S  K  F  V  S  S  M  L  V  C  S  L  P  E  V  E  S  D  D  K  S  E  K  A  G  S  S  L  S  D  G  C  F  M  Y  D  Q  S  S  D  S  Y  L  F  W  A  K  A  W  T  L  V  G  D  V  Y  V  E  F  H  S  T  D  G  D  K  M  P  V  Q  S  E  Q  K  P  L  T  K  E  L  K  M  S  S  E  V  L  R  E  V  E  R  L  K  K  T  L  G  Q  S  S  Q  N  C  S  S  C  S  L  L  N  C  S  C  Q  S  D  R  A  S  S  G  S  S  A  S  S  S  N  R  D  S  R  S  K  S   </first_frame>
            <second_frame>  F  M  D  Q  C  L  N  I  D  K  T  Q  N  L  F  L  P  C  *  F  V  H  Y  L  R  S  K  V  M  I  K  V  K  R  L  G  L  H  Y  L  M  V  V  S  C  M  I  S  H  L  T  A  T  S  F  G  P  R  L  G  H  *  L  G  T  C  M  *  N  S  I  R  Q  M  V  I  R  C  Q  Y  S  Q  S  K  S  P  *  L  K  S  *  R  C  H  L  K  F  *  G  R  L  R  G  S  R  R  R  L  D  S  L  V  K  T  A  A  H  V  L  Y  *  T  A  A  V  R  V  I  G  P  A  V  E  A  V  L  A  A  V  I  E  I  H  V  Q  K  V  </second_frame>
            <third_frame>   L  W  I  N  A  S  T  S  T  R  L  K  I  C  F  F  H  V  S  L  F  I  T  *  G  R  K  *  *  *  K  *  K  G  W  V  F  T  I  *  W  L  F  H  V  *  S  V  I  *  Q  L  P  L  L  G  Q  G  L  D  T  S  W  G  R  V  C  R  I  P  F  D  R  W  *  *  D  A  S  T  V  R  A  K  A  L  N  *  R  V  E  D  V  I  *  S  F  E  G  G  *  E  A  Q  E  D  A  W  T  V  *  S  K  L  Q  L  M  F  F  I  E  L  Q  L  S  E  *  *  G  Q  Q  W  K  Q  C  *  Q  Q  *  *  R  F  T  F  K  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0177K13.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44828" stop="45268"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYGSMPQHRQDSKFVSSMLVCSLPEVESDDKSEKAGSSLSDGCFMYDQSSDSYLFWAKAWTLVGDVYVEFHSTDGDKMPVQSEQKPLTKELKMSSEVLREVERLKKTLGQSSQNCSSCSLLNCSCQSDRASSGSSASSSNRDSRSKS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="46021" PGL_stop="46404"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46021" e_stop="46404"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="46021" e_stop="46404" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46021" stop="46404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203614" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAATCAGATGTGGATTCAAGCTACTTGAGAAATGAAGTATATACTCAGTTTGCTCATACATATTTAAGGCTTGGGATGCTACTGGCCAGTGAAGATACATTTGCTGAGGTTTACGAGAACTGTGTCCTTGAGGATTCTTTCAACTCCTCTGTTAGTAGACCGAAGATAGACCGTAGAAAGCATGAGATTTCAGCTAATGATGCCATTAGAGAGGCTTTATCTGTCTATGAGTCACTGGGTGAGTTACGGAAACAGGAATCTGCATATGCATACTTTCAGTTGGCTTGCTACCAAAGGGATTGCTGCTTGAAATTTTTGGAGCAAGATCAGAAGAAACACGGTTCATCCAAGGGGGAAAAAAGCTTTCTTCATAGAGTAAAGCA</gDNA_template>
            <first_frame> G  I  R  C  G  F  K  L  L  E  K  *  S  I  Y  S  V  C  S  Y  I  F  K  A  W  D  A  T  G  Q  *  R  Y  I  C  *  G  L  R  E  L  C  P  *  G  F  F  Q  L  L  C  *  *  T  E  D  R  P  *  K  A  *  D  F  S  *  *  C  H  *  R  G  F  I  C  L  *  V  T  G  *  V  T  E  T  G  I  C  I  C  I  L  S  V  G  L  L  P  K  G  L  L  L  E  I  F  G  A  R  S  E  E  T  R  F  I  Q  G  G  K  K  L  S  S  *  S  K  A </first_frame>
            <second_frame>  E  S  D  V  D  S  S  Y  L  R  N  E  V  Y  T  Q  F  A  H  T  Y  L  R  L  G  M  L  L  A  S  E  D  T  F  A  E  V  Y  E  N  C  V  L  E  D  S  F  N  S  S  V  S  R  P  K  I  D  R  R  K  H  E  I  S  A  N  D  A  I  R  E  A  L  S  V  Y  E  S  L  G  E  L  R  K  Q  E  S  A  Y  A  Y  F  Q  L  A  C  Y  Q  R  D  C  C  L  K  F  L  E  Q  D  Q  K  K  H  G  S  S  K  G  E  K  S  F  L  H  R  V  K   </second_frame>
            <third_frame>   N  Q  M  W  I  Q  A  T  *  E  M  K  Y  I  L  S  L  L  I  H  I  *  G  L  G  C  Y  W  P  V  K  I  H  L  L  R  F  T  R  T  V  S  L  R  I  L  S  T  P  L  L  V  D  R  R  *  T  V  E  S  M  R  F  Q  L  M  M  P  L  E  R  L  Y  L  S  M  S  H  W  V  S  Y  G  N  R  N  L  H  M  H  T  F  S  W  L  A  T  K  G  I  A  A  *  N  F  W  S  K  I  R  R  N  T  V  H  P  R  G  K  K  A  F  F  I  E  *  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0177K13.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46022" stop="46402"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESDVDSSYLRNEVYTQFAHTYLRLGMLLASEDTFAEVYENCVLEDSFNSSVSRPKIDRRKHEISANDAIREALSVYESLGELRKQESAYAYFQLACYQRDCCLKFLEQDQKKHGSSKGEKSFLHRVK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="53351" PGL_stop="56577"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53351" e_stop="53616"/>
            <exon e_start="54664" e_stop="54761"/>
            <exon e_start="56158" e_stop="56577"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.599" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53351" e_stop="53616" e_length="266"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="53617" i_stop="54663" i_length="1047"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54664" e_stop="54761" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.599">
            <gDNA_intron_boundary i_start="54762" i_stop="56157" i_length="1396"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="56158" e_stop="56577" e_length="420"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53351" stop="53616"/>
              <exon start="54664" stop="54761"/>
              <exon start="56158" stop="56428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53358" stop="53616"/>
              <exon start="54664" stop="54761"/>
              <exon start="56158" stop="56406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53384" stop="53616"/>
              <exon start="54664" stop="54761"/>
              <exon start="56158" stop="56406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53455" stop="53616"/>
              <exon start="54664" stop="54761"/>
              <exon start="56158" stop="56406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53455" stop="53616"/>
              <exon start="54664" stop="54761"/>
              <exon start="56158" stop="56406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53456" stop="53616"/>
              <exon start="54664" stop="54761"/>
              <exon start="56158" stop="56406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53464" stop="53616"/>
              <exon start="54664" stop="54761"/>
              <exon start="56158" stop="56406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53464" stop="53616"/>
              <exon start="54664" stop="54761"/>
              <exon start="56158" stop="56406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53484" stop="53616"/>
              <exon start="54664" stop="54761"/>
              <exon start="56158" stop="56577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53485" stop="53616"/>
              <exon start="54664" stop="54761"/>
              <exon start="56158" stop="56577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53502" stop="53616"/>
              <exon start="54664" stop="54761"/>
              <exon start="56158" stop="56406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53524" stop="53616"/>
              <exon start="54664" stop="54761"/>
              <exon start="56158" stop="56406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53597" stop="53616"/>
              <exon start="54664" stop="54761"/>
              <exon start="56158" stop="56406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54672" stop="54761"/>
              <exon start="56158" stop="56406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54674" stop="54761"/>
              <exon start="56158" stop="56406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54684" stop="54761"/>
              <exon start="56158" stop="56426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54686" stop="54761"/>
              <exon start="56158" stop="56406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54696" stop="54761"/>
              <exon start="56158" stop="56406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54714" stop="54761"/>
              <exon start="56158" stop="56428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56204" stop="56406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596486" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAACTTGGTCATTAAGGAGAAAAAGCCCAAAAATATCCTTTTGTTTTTATAAATAGTGCCTAAAAATGATGAAGAAAGATCAAATACTTTCTTCAATTCTCTTGTTTTTCTTCTTGTTTACAGCCTTTATCACAACAATGGCAGATTCACAAGCTTCATCACAACCCTCTAATGAGTCTAAAGTTCATATAGTGTATACTGAGCAACCTAAAGATCAAGAACCTGAAGAGTATCATATCAAAACCCTAACTTCTGTTCTTGGCAG : TGAGGAGGCTGCAAAAGAGGCATTGTTATACAGTTACAAGCACGCAGCTAGTGGATTCTCAGCAAAGCTGACTGCTGAGCAGGTTTCTGAGCTCTCAA : AGTTACCTGGAGTGCTGCAAGTTGTTCCAAGCCAAACAGTTCAGTTGCACACTGGACGCGTCTGAAAGACTACTTTTGAGACCTCATCTCAAAAACAAGTTTCCTTGATGTGTATAAACTTGCTATCTATGCTTGTTTCAATGGTGTTTTGAACTTAGATTGAAAGACTATCCCTACTCCCTAATGTAATTGTGGTACTTGTCGCTGTAACGCTCGTTTTAACTATATGAAAATAAAGTCGTCTGCTTAATATACTTGTACAAATAGTTGTCTTGTGATGGTGAATAATTTAGGCAAAAAATGCCACCAAAGCAGCAATGAACTTTGCATCTCATATAAAACATCACATGAACTTAGTTTATGTTTGTTTTGGCGTGAGAATTTTCCAAGATATAATAGTAATTGGGAACAGTTTTATAG</gDNA_template>
            <first_frame> E  T  W  S  L  R  R  K  S  P  K  I  S  F  C  F  Y  K  *  C  L  K  M  M  K  K  D  Q  I  L  S  S  I  L  L  F  F  F  L  F  T  A  F  I  T  T  M  A  D  S  Q  A  S  S  Q  P  S  N  E  S  K  V  H  I  V  Y  T  E  Q  P  K  D  Q  E  P  E  E  Y  H  I  K  T  L  T  S  V  L  G  S :   E  E  A  A  K  E  A  L  L  Y  S  Y  K  H  A  A  S  G  F  S  A  K  L  T  A  E  Q  V  S  E  L  S   : K  L  P  G  V  L  Q  V  V  P  S  Q  T  V  Q  L  H  T  G  R  V  *  K  T  T  F  E  T  S  S  Q  K  Q  V  S  L  M  C  I  N  L  L  S  M  L  V  S  M  V  F  *  T  *  I  E  R  L  S  L  L  P  N  V  I  V  V  L  V  A  V  T  L  V  L  T  I  *  K  *  S  R  L  L  N  I  L  V  Q  I  V  V  L  *  W  *  I  I  *  A  K  N  A  T  K  A  A  M  N  F  A  S  H  I  K  H  H  M  N  L  V  Y  V  C  F  G  V  R  I  F  Q  D  I  I  V  I  G  N  S  F  I  </first_frame>
            <second_frame>  K  L  G  H  *  G  E  K  A  Q  K  Y  P  F  V  F  I  N  S  A  *  K  *  *  R  K  I  K  Y  F  L  Q  F  S  C  F  S  S  C  L  Q  P  L  S  Q  Q  W  Q  I  H  K  L  H  H  N  P  L  M  S  L  K  F  I  *  C  I  L  S  N  L  K  I  K  N  L  K  S  I  I  S  K  P  *  L  L  F  L  A   : V  R  R  L  Q  K  R  H  C  Y  T  V  T  S  T  Q  L  V  D  S  Q  Q  S  *  L  L  S  R  F  L  S  S  Q  :  S  Y  L  E  C  C  K  L  F  Q  A  K  Q  F  S  C  T  L  D  A  S  E  R  L  L  L  R  P  H  L  K  N  K  F  P  *  C  V  *  T  C  Y  L  C  L  F  Q  W  C  F  E  L  R  L  K  D  Y  P  Y  S  L  M  *  L  W  Y  L  S  L  *  R  S  F  *  L  Y  E  N  K  V  V  C  L  I  Y  L  Y  K  *  L  S  C  D  G  E  *  F  R  Q  K  M  P  P  K  Q  Q  *  T  L  H  L  I  *  N  I  T  *  T  *  F  M  F  V  L  A  *  E  F  S  K  I  *  *  *  L  G  T  V  L  * </second_frame>
            <third_frame>   N  L  V  I  K  E  K  K  P  K  N  I  L  L  F  L  *  I  V  P  K  N  D  E  E  R  S  N  T  F  F  N  S  L  V  F  L  L  V  Y  S  L  Y  H  N  N  G  R  F  T  S  F  I  T  T  L  *  *  V  *  S  S  Y  S  V  Y  *  A  T  *  R  S  R  T  *  R  V  S  Y  Q  N  P  N  F  C  S  W  Q  :  *  G  G  C  K  R  G  I  V  I  Q  L  Q  A  R  S  *  W  I  L  S  K  A  D  C  *  A  G  F  *  A  L  K :   V  T  W  S  A  A  S  C  S  K  P  N  S  S  V  A  H  W  T  R  L  K  D  Y  F  *  D  L  I  S  K  T  S  F  L  D  V  Y  K  L  A  I  Y  A  C  F  N  G  V  L  N  L  D  *  K  T  I  P  T  P  *  C  N  C  G  T  C  R  C  N  A  R  F  N  Y  M  K  I  K  S  S  A  *  Y  T  C  T  N  S  C  L  V  M  V  N  N  L  G  K  K  C  H  Q  S  S  N  E  L  C  I  S  Y  K  T  S  H  E  L  S  L  C  L  F  W  R  E  N  F  P  R  Y  N  S  N  W  E  Q  F  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0177K13.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53408" stop="53616"/>
                    <exon start="54664" stop="54761"/>
                    <exon start="56158" stop="56222"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLKMMKKDQILSSILLFFFLFTAFITTMADSQASSQPSNESKVHIVYTEQPKDQEPEEYHIKTLTSVLGSEEAAKEALLYSYKHAASGFSAKLTAEQVSELSKLPGVLQVVPSQTVQLHTGRV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="62249" PGL_stop="65571"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62249" e_stop="62565"/>
            <exon e_start="64021" e_stop="64101"/>
            <exon e_start="64492" e_stop="64593"/>
            <exon e_start="64686" e_stop="64760"/>
            <exon e_start="65031" e_stop="65420"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.731" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.939" e_score="1.000"/>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62249" e_stop="62565" e_length="317"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.995">
            <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64021" e_stop="64101" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.927" acc_prob="0.731">
            <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64492" e_stop="64593" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.978">
            <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64686" e_stop="64760" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.946" acc_prob="0.939">
            <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270"/>
          </intron>
          <exon e_serial="5" e_score="0.905">
            <gDNA_exon_boundary e_start="65031" e_stop="65420" e_length="390"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62249" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62249" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62254" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62259" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62259" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62262" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62262" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62264" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62264" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62265" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62265" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62265" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62266" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62266" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62267" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62267" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62268" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62268" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62269" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62270" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62272" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62276" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62276" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62277" stop="62495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62289" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62290" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62293" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62307" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62340" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62367" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62404" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62404" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62405" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62405" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62405" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62506" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435654" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64512" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64546" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64553" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64560" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64700" stop="64760"/>
              <exon start="65031" stop="65356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65126" stop="65369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65132" stop="65369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392633" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAACCTCTCACTCTCTAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG : GTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA : ATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG : TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG : CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAACAGCAGTTATTCTTTGCACTTACTAGGCCAAACATGTCTCTCATTCATCATCTTCTTAAATTGCAA</gDNA_template>
            <first_frame> K  K  P  L  T  L  *  Q  W  Q  P  F  P  C  V  L  H  L  P  P  Q  Q  H  F  P  R  T  K  L  F  L  T  P  F  L  F  P  K  Q  I  P  M  L  L  F  Y  L  T  H  F  P  L  S  I  S  V  S  P  S  P  I  L  Y  P  L  L  Y  P  N  T  Q  N  L  K  L  Q  *  L  K  L  K  L  T  K  K  S  L  L  W  K  P  L  A  W  N  Q  N  G  K  K  S  L  L  L  L  W :   L  D  L  G  N  I  L  F  F  L  G  G  I  S  T  P  R  G  L  K  V  Q  M  S  M  T  K :   L  S  *  T  R  C  Y  L  W  E  Q  K  Q  V  L  G  L  E  N  Q  W  C  Q  M  Q  Q  S  T  L  L  L  K  S  S :   *  K  I  R  R  L  S  S  S  S  I  R  R  K  R  T  T  E  G  I  L  V  T  D  S :   Q  L  L  G  *  E  *  W  A  L  L  V  I  K  I  H  Q  Q  S  P  L  Q  T  *  K  Q  P  S  D  F  *  A  Q  N  Y  V  Q  I  A  V  F  S  T  S  A  *  *  C  L  S  G  L  C  S  F  V  *  T  E  K  A  M  T  E  M  S  F  G  R  R  I  *  P  H  V  L  L  *  F  P  S  I  L  F  L  C  M  Y  Y  L  V  E  Q  C  T  *  V  L  N  I  E  E  T  S  F  *  L  N  S  S  Y  S  L  H  L  L  G  Q  T  C  L  S  F  I  I  F  L  N  C   </first_frame>
            <second_frame>  K  N  L  S  L  S  N  N  G  N  P  F  P  V  F  Y  I  F  P  L  N  S  T  F  Q  E  P  N  F  S  *  H  P  F  C  S  Q  S  K  F  Q  C  Y  F  S  I  S  L  I  F  L  S  Q  S  P  F  L  Q  A  Q  F  F  I  L  F  C  T  Q  I  L  R  I  *  S  S  S  S  *  S  *  S  *  P  R  R  A  C  C  G  S  H  *  L  G  T  K  T  G  R  N  L  C  C  C  Y   : G  W  I  S  A  I  Y  C  F  S  W  A  V  Y  L  H  P  E  A  *  R  C  K  C  Q  *  Q   : N  Y  P  K  Q  G  V  T  C  G  N  K  N  K  Y  L  G  W  K  T  S  G  A  K  C  N  S  P  R  C  C  *  R  A   : V  E  R  *  E  G  Y  R  L  Q  V  *  E  E  K  E  L  Q  K  E  Y  W  S  Q  T   : A  N  Y  S  D  K  N  N  G  H  Y  W  L  S  R  F  T  S  S  H  P  C  R  P  R  S  S  Q  V  T  F  R  L  K  I  T  S  K  L  L  F  S  Q  H  L  L  N  S  A  F  Q  D  Y  V  V  L  Y  R  P  R  K  Q  *  Q  K  *  V  L  E  G  A  F  N  L  M  F  C  C  N  F  H  P  F  C  F  F  A  C  I  I  W  L  S  N  V  L  E  F  *  I  L  K  K  P  L  F  D  *  T  A  V  I  L  C  T  Y  *  A  K  H  V  S  H  S  S  S  S  *  I  A  </second_frame>
            <third_frame>   K  T  S  H  S  L  T  M  A  T  L  S  L  C  S  T  S  S  P  S  T  A  L  S  K  N  Q  T  F  L  N  T  L  S  V  P  K  A  N  S  N  V  T  F  L  S  H  S  F  S  S  L  N  L  R  F  S  K  P  N  S  L  S  S  F  V  P  K  Y  S  E  S  E  A  P  V  A  E  V  E  A  D  Q  E  E  P  V  V  E  A  T  S  L  E  P  K  R  E  E  I  F  A  V  V  M  :  V  G  S  R  Q  Y  I  V  F  P  G  R  Y  I  Y  T  Q  R  L  K  G  A  N  V  N  D  K  :  I  I  L  N  K  V  L  L  V  G  T  K  T  S  T  W  V  G  K  P  V  V  P  N  A  T  V  H  A  V  V  E  E  Q  :  L  K  D  K  K  V  I  V  F  K  Y  K  K  K  K  N  Y  R  R  N  I  G  H  R  Q  :  P  I  T  R  I  R  I  M  G  I  T  G  Y  Q  D  S  P  A  V  T  L  A  D  L  E  A  A  K  *  L  L  G  S  K  L  R  P  N  C  C  F  L  N  I  C  L  I  V  P  F  R  I  M  *  F  C  I  D  R  E  S  N  D  R  N  E  F  W  K  A  H  L  T  S  C  F  V  V  I  S  I  H  F  V  S  L  H  V  L  F  G  *  A  M  Y  L  S  F  E  Y  *  R  N  L  F  L  T  E  Q  Q  L  F  F  A  L  T  R  P  N  M  S  L  I  H  H  L  L  K  L  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0177K13.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62251" stop="62565"/>
                    <exon start="64021" stop="64101"/>
                    <exon start="64492" stop="64593"/>
                    <exon start="64686" stop="64760"/>
                    <exon start="65031" stop="65117"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTSHSLTMATLSLCSTSSPSTALSKNQTFLNTLSVPKANSNVTFLSHSFSSLNLRFSKPNSLSSFVPKYSESEAPVAEVEADQEEPVVEATSLEPKREEIFAVVMVGSRQYIVFPGRYIYTQRLKGANVNDKIILNKVLLVGTKTSTWVGKPVVPNATVHAVVEEQLKDKKVIVFKYKKKKNYRRNIGHRQPITRIRIMGITGYQDSPAVTLADLEAAK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="62249" e_stop="62565"/>
            <exon e_start="64021" e_stop="64101"/>
            <exon e_start="64492" e_stop="64593"/>
            <exon e_start="64686" e_stop="64760"/>
            <exon e_start="65031" e_stop="65356"/>
            <exon e_start="65559" e_stop="65570"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.731" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.077" e_score="0.997"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62249" e_stop="62565" e_length="317"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.995">
            <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64021" e_stop="64101" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.927" acc_prob="0.731">
            <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64492" e_stop="64593" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.978">
            <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64686" e_stop="64760" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.946" acc_prob="0.939">
            <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="65031" e_stop="65356" e_length="326"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.077">
            <gDNA_intron_boundary i_start="65357" i_stop="65558" i_length="202"/>
          </intron>
          <exon e_serial="6" e_score="0.750">
            <gDNA_exon_boundary e_start="65559" e_stop="65570" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62249" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62249" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62254" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62259" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62259" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62262" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62262" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62264" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62264" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62265" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62265" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62265" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62266" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62266" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62267" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62267" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62268" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62268" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62269" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62270" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62272" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62276" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62276" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62277" stop="62495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62289" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62290" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62293" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62307" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62340" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62367" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62404" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62404" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62405" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62405" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62405" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64512" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64523" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65356"/>
              <exon start="65559" stop="65570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64546" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64700" stop="64760"/>
              <exon start="65031" stop="65356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235217" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAACCTCTCACTCTCTAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG : GTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA : ATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG : TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG : CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAACA : AAAGTAAAAACA</gDNA_template>
            <first_frame> K  K  P  L  T  L  *  Q  W  Q  P  F  P  C  V  L  H  L  P  P  Q  Q  H  F  P  R  T  K  L  F  L  T  P  F  L  F  P  K  Q  I  P  M  L  L  F  Y  L  T  H  F  P  L  S  I  S  V  S  P  S  P  I  L  Y  P  L  L  Y  P  N  T  Q  N  L  K  L  Q  *  L  K  L  K  L  T  K  K  S  L  L  W  K  P  L  A  W  N  Q  N  G  K  K  S  L  L  L  L  W :   L  D  L  G  N  I  L  F  F  L  G  G  I  S  T  P  R  G  L  K  V  Q  M  S  M  T  K :   L  S  *  T  R  C  Y  L  W  E  Q  K  Q  V  L  G  L  E  N  Q  W  C  Q  M  Q  Q  S  T  L  L  L  K  S  S :   *  K  I  R  R  L  S  S  S  S  I  R  R  K  R  T  T  E  G  I  L  V  T  D  S :   Q  L  L  G  *  E  *  W  A  L  L  V  I  K  I  H  Q  Q  S  P  L  Q  T  *  K  Q  P  S  D  F  *  A  Q  N  Y  V  Q  I  A  V  F  S  T  S  A  *  *  C  L  S  G  L  C  S  F  V  *  T  E  K  A  M  T  E  M  S  F  G  R  R  I  *  P  H  V  L  L  *  F  P  S  I  L  F  L  C  M  Y  Y  L  V  E  Q  C  T  *  V  L  N  I  E  E  T  S  F  *  L  N   : K  S  K  N  </first_frame>
            <second_frame>  K  N  L  S  L  S  N  N  G  N  P  F  P  V  F  Y  I  F  P  L  N  S  T  F  Q  E  P  N  F  S  *  H  P  F  C  S  Q  S  K  F  Q  C  Y  F  S  I  S  L  I  F  L  S  Q  S  P  F  L  Q  A  Q  F  F  I  L  F  C  T  Q  I  L  R  I  *  S  S  S  S  *  S  *  S  *  P  R  R  A  C  C  G  S  H  *  L  G  T  K  T  G  R  N  L  C  C  C  Y   : G  W  I  S  A  I  Y  C  F  S  W  A  V  Y  L  H  P  E  A  *  R  C  K  C  Q  *  Q   : N  Y  P  K  Q  G  V  T  C  G  N  K  N  K  Y  L  G  W  K  T  S  G  A  K  C  N  S  P  R  C  C  *  R  A   : V  E  R  *  E  G  Y  R  L  Q  V  *  E  E  K  E  L  Q  K  E  Y  W  S  Q  T   : A  N  Y  S  D  K  N  N  G  H  Y  W  L  S  R  F  T  S  S  H  P  C  R  P  R  S  S  Q  V  T  F  R  L  K  I  T  S  K  L  L  F  S  Q  H  L  L  N  S  A  F  Q  D  Y  V  V  L  Y  R  P  R  K  Q  *  Q  K  *  V  L  E  G  A  F  N  L  M  F  C  C  N  F  H  P  F  C  F  F  A  C  I  I  W  L  S  N  V  L  E  F  *  I  L  K  K  P  L  F  D  *  T  :  K  V  K  T </second_frame>
            <third_frame>   K  T  S  H  S  L  T  M  A  T  L  S  L  C  S  T  S  S  P  S  T  A  L  S  K  N  Q  T  F  L  N  T  L  S  V  P  K  A  N  S  N  V  T  F  L  S  H  S  F  S  S  L  N  L  R  F  S  K  P  N  S  L  S  S  F  V  P  K  Y  S  E  S  E  A  P  V  A  E  V  E  A  D  Q  E  E  P  V  V  E  A  T  S  L  E  P  K  R  E  E  I  F  A  V  V  M  :  V  G  S  R  Q  Y  I  V  F  P  G  R  Y  I  Y  T  Q  R  L  K  G  A  N  V  N  D  K  :  I  I  L  N  K  V  L  L  V  G  T  K  T  S  T  W  V  G  K  P  V  V  P  N  A  T  V  H  A  V  V  E  E  Q  :  L  K  D  K  K  V  I  V  F  K  Y  K  K  K  K  N  Y  R  R  N  I  G  H  R  Q  :  P  I  T  R  I  R  I  M  G  I  T  G  Y  Q  D  S  P  A  V  T  L  A  D  L  E  A  A  K  *  L  L  G  S  K  L  R  P  N  C  C  F  L  N  I  C  L  I  V  P  F  R  I  M  *  F  C  I  D  R  E  S  N  D  R  N  E  F  W  K  A  H  L  T  S  C  F  V  V  I  S  I  H  F  V  S  L  H  V  L  F  G  *  A  M  Y  L  S  F  E  Y  *  R  N  L  F  L  T  E  Q :   K  *  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0177K13.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62251" stop="62565"/>
                    <exon start="64021" stop="64101"/>
                    <exon start="64492" stop="64593"/>
                    <exon start="64686" stop="64760"/>
                    <exon start="65031" stop="65117"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTSHSLTMATLSLCSTSSPSTALSKNQTFLNTLSVPKANSNVTFLSHSFSSLNLRFSKPNSLSSFVPKYSESEAPVAEVEADQEEPVVEATSLEPKREEIFAVVMVGSRQYIVFPGRYIYTQRLKGANVNDKIILNKVLLVGTKTSTWVGKPVVPNATVHAVVEEQLKDKKVIVFKYKKKKNYRRNIGHRQPITRIRIMGITGYQDSPAVTLADLEAAK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="62249" e_stop="62565"/>
            <exon e_start="64021" e_stop="64101"/>
            <exon e_start="64492" e_stop="64593"/>
            <exon e_start="64686" e_stop="64760"/>
            <exon e_start="65031" e_stop="65338"/>
            <exon e_start="65559" e_stop="65568"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.731" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.077" e_score="0.987"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62249" e_stop="62565" e_length="317"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.995">
            <gDNA_intron_boundary i_start="62566" i_stop="64020" i_length="1455"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64021" e_stop="64101" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.927" acc_prob="0.731">
            <gDNA_intron_boundary i_start="64102" i_stop="64491" i_length="390"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64492" e_stop="64593" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.978">
            <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64686" e_stop="64760" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.946" acc_prob="0.939">
            <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="65031" e_stop="65338" e_length="308"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.077">
            <gDNA_intron_boundary i_start="65339" i_stop="65558" i_length="220"/>
          </intron>
          <exon e_serial="6" e_score="0.800">
            <gDNA_exon_boundary e_start="65559" e_stop="65568" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62249" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62249" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62254" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62259" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62259" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62262" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62262" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62264" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62264" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62265" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62265" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62265" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62266" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62266" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62267" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62267" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62268" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62268" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62269" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62270" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62272" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62276" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62276" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62277" stop="62495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62289" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62290" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62293" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62307" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62340" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62367" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62404" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62404" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62405" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62405" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62405" stop="62565"/>
              <exon start="64021" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64073" stop="64101"/>
              <exon start="64492" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65338"/>
              <exon start="65559" stop="65568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370487" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAACCTCTCACTCTCTAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATG : GTTGGATCTCGGCAATATATTGTTTTTCCTGGGCGGTATATCTACACCCAGAGGCTTAAAGGTGCAAATGTCAATGACAAA : ATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG : TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG : CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAA : AAAGTAAAAA</gDNA_template>
            <first_frame> K  K  P  L  T  L  *  Q  W  Q  P  F  P  C  V  L  H  L  P  P  Q  Q  H  F  P  R  T  K  L  F  L  T  P  F  L  F  P  K  Q  I  P  M  L  L  F  Y  L  T  H  F  P  L  S  I  S  V  S  P  S  P  I  L  Y  P  L  L  Y  P  N  T  Q  N  L  K  L  Q  *  L  K  L  K  L  T  K  K  S  L  L  W  K  P  L  A  W  N  Q  N  G  K  K  S  L  L  L  L  W :   L  D  L  G  N  I  L  F  F  L  G  G  I  S  T  P  R  G  L  K  V  Q  M  S  M  T  K :   L  S  *  T  R  C  Y  L  W  E  Q  K  Q  V  L  G  L  E  N  Q  W  C  Q  M  Q  Q  S  T  L  L  L  K  S  S :   *  K  I  R  R  L  S  S  S  S  I  R  R  K  R  T  T  E  G  I  L  V  T  D  S :   Q  L  L  G  *  E  *  W  A  L  L  V  I  K  I  H  Q  Q  S  P  L  Q  T  *  K  Q  P  S  D  F  *  A  Q  N  Y  V  Q  I  A  V  F  S  T  S  A  *  *  C  L  S  G  L  C  S  F  V  *  T  E  K  A  M  T  E  M  S  F  G  R  R  I  *  P  H  V  L  L  *  F  P  S  I  L  F  L  C  M  Y  Y  L  V  E  Q  C  T  *  V  L  N  I  E  E   : K  S  K   </first_frame>
            <second_frame>  K  N  L  S  L  S  N  N  G  N  P  F  P  V  F  Y  I  F  P  L  N  S  T  F  Q  E  P  N  F  S  *  H  P  F  C  S  Q  S  K  F  Q  C  Y  F  S  I  S  L  I  F  L  S  Q  S  P  F  L  Q  A  Q  F  F  I  L  F  C  T  Q  I  L  R  I  *  S  S  S  S  *  S  *  S  *  P  R  R  A  C  C  G  S  H  *  L  G  T  K  T  G  R  N  L  C  C  C  Y   : G  W  I  S  A  I  Y  C  F  S  W  A  V  Y  L  H  P  E  A  *  R  C  K  C  Q  *  Q   : N  Y  P  K  Q  G  V  T  C  G  N  K  N  K  Y  L  G  W  K  T  S  G  A  K  C  N  S  P  R  C  C  *  R  A   : V  E  R  *  E  G  Y  R  L  Q  V  *  E  E  K  E  L  Q  K  E  Y  W  S  Q  T   : A  N  Y  S  D  K  N  N  G  H  Y  W  L  S  R  F  T  S  S  H  P  C  R  P  R  S  S  Q  V  T  F  R  L  K  I  T  S  K  L  L  F  S  Q  H  L  L  N  S  A  F  Q  D  Y  V  V  L  Y  R  P  R  K  Q  *  Q  K  *  V  L  E  G  A  F  N  L  M  F  C  C  N  F  H  P  F  C  F  F  A  C  I  I  W  L  S  N  V  L  E  F  *  I  L  K  K  :  K  V  K  </second_frame>
            <third_frame>   K  T  S  H  S  L  T  M  A  T  L  S  L  C  S  T  S  S  P  S  T  A  L  S  K  N  Q  T  F  L  N  T  L  S  V  P  K  A  N  S  N  V  T  F  L  S  H  S  F  S  S  L  N  L  R  F  S  K  P  N  S  L  S  S  F  V  P  K  Y  S  E  S  E  A  P  V  A  E  V  E  A  D  Q  E  E  P  V  V  E  A  T  S  L  E  P  K  R  E  E  I  F  A  V  V  M  :  V  G  S  R  Q  Y  I  V  F  P  G  R  Y  I  Y  T  Q  R  L  K  G  A  N  V  N  D  K  :  I  I  L  N  K  V  L  L  V  G  T  K  T  S  T  W  V  G  K  P  V  V  P  N  A  T  V  H  A  V  V  E  E  Q  :  L  K  D  K  K  V  I  V  F  K  Y  K  K  K  K  N  Y  R  R  N  I  G  H  R  Q  :  P  I  T  R  I  R  I  M  G  I  T  G  Y  Q  D  S  P  A  V  T  L  A  D  L  E  A  A  K  *  L  L  G  S  K  L  R  P  N  C  C  F  L  N  I  C  L  I  V  P  F  R  I  M  *  F  C  I  D  R  E  S  N  D  R  N  E  F  W  K  A  H  L  T  S  C  F  V  V  I  S  I  H  F  V  S  L  H  V  L  F  G  *  A  M  Y  L  S  F  E  Y  *  R  K :   K  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0177K13.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62251" stop="62565"/>
                    <exon start="64021" stop="64101"/>
                    <exon start="64492" stop="64593"/>
                    <exon start="64686" stop="64760"/>
                    <exon start="65031" stop="65117"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTSHSLTMATLSLCSTSSPSTALSKNQTFLNTLSVPKANSNVTFLSHSFSSLNLRFSKPNSLSSFVPKYSESEAPVAEVEADQEEPVVEATSLEPKREEIFAVVMVGSRQYIVFPGRYIYTQRLKGANVNDKIILNKVLLVGTKTSTWVGKPVVPNATVHAVVEEQLKDKKVIVFKYKKKKNYRRNIGHRQPITRIRIMGITGYQDSPAVTLADLEAAK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="62277" e_stop="62522"/>
            <exon e_start="64514" e_stop="64593"/>
            <exon e_start="64686" e_stop="64760"/>
            <exon e_start="65031" e_stop="65371"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.982"/>
          <exon-intron don_prob="0.994" acc_prob="0.978" e_score="0.988"/>
          <exon-intron don_prob="0.946" acc_prob="0.939" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="62277" e_stop="62522" e_length="246"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62523" i_stop="64513" i_length="1991"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="64514" e_stop="64593" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.978">
            <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64686" e_stop="64760" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.946" acc_prob="0.939">
            <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="65031" e_stop="65371" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62277" stop="62495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62335" stop="62522"/>
              <exon start="64514" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432044" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64546" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64553" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64560" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64700" stop="64760"/>
              <exon start="65031" stop="65356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65126" stop="65369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65132" stop="65369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392633" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCAC : TTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG : TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG : CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAACAGCAGTTATTCTTTGC</gDNA_template>
            <first_frame> N  P  F  P  V  F  Y  I  F  P  L  N  S  T  F  Q  E  P  N  F  S  *  H  P  F  C  S  Q  S  K  F  Q  C  Y  F  S  I  S  L  I  F  L  S  Q  S  P  F  L  Q  A  Q  F  F  I  L  F  C  T  Q  I  L  R  I  *  S  S  S  S  *  S  *  S  *  P  R  R  A  C  C  G  S  H  :  L  W  E  Q  K  Q  V  L  G  L  E  N  Q  W  C  Q  M  Q  Q  S  T  L  L  L  K  S  S :   *  K  I  R  R  L  S  S  S  S  I  R  R  K  R  T  T  E  G  I  L  V  T  D  S :   Q  L  L  G  *  E  *  W  A  L  L  V  I  K  I  H  Q  Q  S  P  L  Q  T  *  K  Q  P  S  D  F  *  A  Q  N  Y  V  Q  I  A  V  F  S  T  S  A  *  *  C  L  S  G  L  C  S  F  V  *  T  E  K  A  M  T  E  M  S  F  G  R  R  I  *  P  H  V  L  L  *  F  P  S  I  L  F  L  C  M  Y  Y  L  V  E  Q  C  T  *  V  L  N  I  E  E  T  S  F  *  L  N  S  S  Y  S  L  </first_frame>
            <second_frame>  T  L  S  L  C  S  T  S  S  P  S  T  A  L  S  K  N  Q  T  F  L  N  T  L  S  V  P  K  A  N  S  N  V  T  F  L  S  H  S  F  S  S  L  N  L  R  F  S  K  P  N  S  L  S  S  F  V  P  K  Y  S  E  S  E  A  P  V  A  E  V  E  A  D  Q  E  E  P  V  V  E  A  T :   C  G  N  K  N  K  Y  L  G  W  K  T  S  G  A  K  C  N  S  P  R  C  C  *  R  A   : V  E  R  *  E  G  Y  R  L  Q  V  *  E  E  K  E  L  Q  K  E  Y  W  S  Q  T   : A  N  Y  S  D  K  N  N  G  H  Y  W  L  S  R  F  T  S  S  H  P  C  R  P  R  S  S  Q  V  T  F  R  L  K  I  T  S  K  L  L  F  S  Q  H  L  L  N  S  A  F  Q  D  Y  V  V  L  Y  R  P  R  K  Q  *  Q  K  *  V  L  E  G  A  F  N  L  M  F  C  C  N  F  H  P  F  C  F  F  A  C  I  I  W  L  S  N  V  L  E  F  *  I  L  K  K  P  L  F  D  *  T  A  V  I  L  C </second_frame>
            <third_frame>   P  F  P  C  V  L  H  L  P  P  Q  Q  H  F  P  R  T  K  L  F  L  T  P  F  L  F  P  K  Q  I  P  M  L  L  F  Y  L  T  H  F  P  L  S  I  S  V  S  P  S  P  I  L  Y  P  L  L  Y  P  N  T  Q  N  L  K  L  Q  *  L  K  L  K  L  T  K  K  S  L  L  W  K  P   : L  V  G  T  K  T  S  T  W  V  G  K  P  V  V  P  N  A  T  V  H  A  V  V  E  E  Q  :  L  K  D  K  K  V  I  V  F  K  Y  K  K  K  K  N  Y  R  R  N  I  G  H  R  Q  :  P  I  T  R  I  R  I  M  G  I  T  G  Y  Q  D  S  P  A  V  T  L  A  D  L  E  A  A  K  *  L  L  G  S  K  L  R  P  N  C  C  F  L  N  I  C  L  I  V  P  F  R  I  M  *  F  C  I  D  R  E  S  N  D  R  N  E  F  W  K  A  H  L  T  S  C  F  V  V  I  S  I  H  F  V  S  L  H  V  L  F  G  *  A  M  Y  L  S  F  E  Y  *  R  N  L  F  L  T  E  Q  Q  L  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0177K13.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62278" stop="62522"/>
                    <exon start="64514" stop="64586"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLSLCSTSSPSTALSKNQTFLNTLSVPKANSNVTFLSHSFSSLNLRFSKPNSLSSFVPKYSESEAPVAEVEADQEEPVVEATCGNKNKYLGWKTSGAKCNSPRCC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0177K13.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62480" stop="62522"/>
                    <exon start="64514" stop="64593"/>
                    <exon start="64686" stop="64760"/>
                    <exon start="65031" stop="65117"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKLKLTKKSLLWKPLVGTKTSTWVGKPVVPNATVHAVVEEQLKDKKVIVFKYKKKKNYRRNIGHRQPITRIRIMGITGYQDSPAVTLADLEAAK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0177K13.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64721" stop="64760"/>
                    <exon start="65031" stop="65218"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEKELQKEYWSQTANYSDKNNGHYWLSRFTSSHPCRPRSSQVTFRLKITSKLLFSQHLLNSAFQDYVVLYRPRKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="62277" e_stop="62522"/>
            <exon e_start="64514" e_stop="64593"/>
            <exon e_start="64686" e_stop="64760"/>
            <exon e_start="65031" e_stop="65356"/>
            <exon e_start="65559" e_stop="65571"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.982"/>
          <exon-intron don_prob="0.994" acc_prob="0.978" e_score="0.988"/>
          <exon-intron don_prob="0.946" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.077" e_score="0.997"/>
          <exon-only e_score="0.769"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="62277" e_stop="62522" e_length="246"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62523" i_stop="64513" i_length="1991"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="64514" e_stop="64593" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.978">
            <gDNA_intron_boundary i_start="64594" i_stop="64685" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64686" e_stop="64760" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.946" acc_prob="0.939">
            <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="65031" e_stop="65356" e_length="326"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.077">
            <gDNA_intron_boundary i_start="65357" i_stop="65558" i_length="202"/>
          </intron>
          <exon e_serial="5" e_score="0.769">
            <gDNA_exon_boundary e_start="65559" e_stop="65571" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62277" stop="62495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62335" stop="62522"/>
              <exon start="64514" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65356"/>
              <exon start="65559" stop="65571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64523" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65356"/>
              <exon start="65559" stop="65570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64546" stop="64593"/>
              <exon start="64686" stop="64760"/>
              <exon start="65031" stop="65356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64700" stop="64760"/>
              <exon start="65031" stop="65356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235217" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCAC : TTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG : TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG : CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAACA : AAAGTAAAAACAA</gDNA_template>
            <first_frame> N  P  F  P  V  F  Y  I  F  P  L  N  S  T  F  Q  E  P  N  F  S  *  H  P  F  C  S  Q  S  K  F  Q  C  Y  F  S  I  S  L  I  F  L  S  Q  S  P  F  L  Q  A  Q  F  F  I  L  F  C  T  Q  I  L  R  I  *  S  S  S  S  *  S  *  S  *  P  R  R  A  C  C  G  S  H  :  L  W  E  Q  K  Q  V  L  G  L  E  N  Q  W  C  Q  M  Q  Q  S  T  L  L  L  K  S  S :   *  K  I  R  R  L  S  S  S  S  I  R  R  K  R  T  T  E  G  I  L  V  T  D  S :   Q  L  L  G  *  E  *  W  A  L  L  V  I  K  I  H  Q  Q  S  P  L  Q  T  *  K  Q  P  S  D  F  *  A  Q  N  Y  V  Q  I  A  V  F  S  T  S  A  *  *  C  L  S  G  L  C  S  F  V  *  T  E  K  A  M  T  E  M  S  F  G  R  R  I  *  P  H  V  L  L  *  F  P  S  I  L  F  L  C  M  Y  Y  L  V  E  Q  C  T  *  V  L  N  I  E  E  T  S  F  *  L  N   : K  S  K  N   </first_frame>
            <second_frame>  T  L  S  L  C  S  T  S  S  P  S  T  A  L  S  K  N  Q  T  F  L  N  T  L  S  V  P  K  A  N  S  N  V  T  F  L  S  H  S  F  S  S  L  N  L  R  F  S  K  P  N  S  L  S  S  F  V  P  K  Y  S  E  S  E  A  P  V  A  E  V  E  A  D  Q  E  E  P  V  V  E  A  T :   C  G  N  K  N  K  Y  L  G  W  K  T  S  G  A  K  C  N  S  P  R  C  C  *  R  A   : V  E  R  *  E  G  Y  R  L  Q  V  *  E  E  K  E  L  Q  K  E  Y  W  S  Q  T   : A  N  Y  S  D  K  N  N  G  H  Y  W  L  S  R  F  T  S  S  H  P  C  R  P  R  S  S  Q  V  T  F  R  L  K  I  T  S  K  L  L  F  S  Q  H  L  L  N  S  A  F  Q  D  Y  V  V  L  Y  R  P  R  K  Q  *  Q  K  *  V  L  E  G  A  F  N  L  M  F  C  C  N  F  H  P  F  C  F  F  A  C  I  I  W  L  S  N  V  L  E  F  *  I  L  K  K  P  L  F  D  *  T  :  K  V  K  T  </second_frame>
            <third_frame>   P  F  P  C  V  L  H  L  P  P  Q  Q  H  F  P  R  T  K  L  F  L  T  P  F  L  F  P  K  Q  I  P  M  L  L  F  Y  L  T  H  F  P  L  S  I  S  V  S  P  S  P  I  L  Y  P  L  L  Y  P  N  T  Q  N  L  K  L  Q  *  L  K  L  K  L  T  K  K  S  L  L  W  K  P   : L  V  G  T  K  T  S  T  W  V  G  K  P  V  V  P  N  A  T  V  H  A  V  V  E  E  Q  :  L  K  D  K  K  V  I  V  F  K  Y  K  K  K  K  N  Y  R  R  N  I  G  H  R  Q  :  P  I  T  R  I  R  I  M  G  I  T  G  Y  Q  D  S  P  A  V  T  L  A  D  L  E  A  A  K  *  L  L  G  S  K  L  R  P  N  C  C  F  L  N  I  C  L  I  V  P  F  R  I  M  *  F  C  I  D  R  E  S  N  D  R  N  E  F  W  K  A  H  L  T  S  C  F  V  V  I  S  I  H  F  V  S  L  H  V  L  F  G  *  A  M  Y  L  S  F  E  Y  *  R  N  L  F  L  T  E  Q :   K  *  K  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0177K13.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62278" stop="62522"/>
                    <exon start="64514" stop="64586"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLSLCSTSSPSTALSKNQTFLNTLSVPKANSNVTFLSHSFSSLNLRFSKPNSLSSFVPKYSESEAPVAEVEADQEEPVVEATCGNKNKYLGWKTSGAKCNSPRCC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0177K13.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62480" stop="62522"/>
                    <exon start="64514" stop="64593"/>
                    <exon start="64686" stop="64760"/>
                    <exon start="65031" stop="65117"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKLKLTKKSLLWKPLVGTKTSTWVGKPVVPNATVHAVVEEQLKDKKVIVFKYKKKKNYRRNIGHRQPITRIRIMGITGYQDSPAVTLADLEAAK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0177K13.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="5" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64721" stop="64760"/>
                    <exon start="65031" stop="65218"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEKELQKEYWSQTANYSDKNNGHYWLSRFTSSHPCRPRSSQVTFRLKITSKLLFSQHLLNSAFQDYVVLYRPRKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="64685" e_stop="64760"/>
            <exon e_start="65031" e_stop="65369"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.946" acc_prob="0.939" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64685" e_stop="64760" e_length="76"/>
          </exon>
          <intron i_serial="1" don_prob="0.946" acc_prob="0.939">
            <gDNA_intron_boundary i_start="64761" i_stop="65030" i_length="270"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="65031" e_stop="65369" e_length="339"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64685" stop="64760"/>
              <exon start="65031" stop="65328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615769" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64700" stop="64760"/>
              <exon start="65031" stop="65356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65126" stop="65369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65132" stop="65369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392633" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG : CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAACAGCAGTTATTCTTT</gDNA_template>
            <first_frame> V  E  R  *  E  G  Y  R  L  Q  V  *  E  E  K  E  L  Q  K  E  Y  W  S  Q  T   : A  N  Y  S  D  K  N  N  G  H  Y  W  L  S  R  F  T  S  S  H  P  C  R  P  R  S  S  Q  V  T  F  R  L  K  I  T  S  K  L  L  F  S  Q  H  L  L  N  S  A  F  Q  D  Y  V  V  L  Y  R  P  R  K  Q  *  Q  K  *  V  L  E  G  A  F  N  L  M  F  C  C  N  F  H  P  F  C  F  F  A  C  I  I  W  L  S  N  V  L  E  F  *  I  L  K  K  P  L  F  D  *  T  A  V  I  L  </first_frame>
            <second_frame>  L  K  D  K  K  V  I  V  F  K  Y  K  K  K  K  N  Y  R  R  N  I  G  H  R  Q  :  P  I  T  R  I  R  I  M  G  I  T  G  Y  Q  D  S  P  A  V  T  L  A  D  L  E  A  A  K  *  L  L  G  S  K  L  R  P  N  C  C  F  L  N  I  C  L  I  V  P  F  R  I  M  *  F  C  I  D  R  E  S  N  D  R  N  E  F  W  K  A  H  L  T  S  C  F  V  V  I  S  I  H  F  V  S  L  H  V  L  F  G  *  A  M  Y  L  S  F  E  Y  *  R  N  L  F  L  T  E  Q  Q  L  F  F </second_frame>
            <third_frame>   *  K  I  R  R  L  S  S  S  S  I  R  R  K  R  T  T  E  G  I  L  V  T  D  S :   Q  L  L  G  *  E  *  W  A  L  L  V  I  K  I  H  Q  Q  S  P  L  Q  T  *  K  Q  P  S  D  F  *  A  Q  N  Y  V  Q  I  A  V  F  S  T  S  A  *  *  C  L  S  G  L  C  S  F  V  *  T  E  K  A  M  T  E  M  S  F  G  R  R  I  *  P  H  V  L  L  *  F  P  S  I  L  F  L  C  M  Y  Y  L  V  E  Q  C  T  *  V  L  N  I  E  E  T  S  F  *  L  N  S  S  Y  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0177K13.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64721" stop="64760"/>
                    <exon start="65031" stop="65218"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEKELQKEYWSQTANYSDKNNGHYWLSRFTSSHPCRPRSSQVTFRLKITSKLLFSQHLLNSAFQDYVVLYRPRKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="62256" e_stop="62968"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62256" e_stop="62968" e_length="713"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62256" stop="62857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62260" stop="62968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62260" stop="62611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62277" stop="62495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340453" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTCACTCTCTAACAATGGCAACCCTTTCCCTGTGTTCTACATCTTCCCCCTCAACAGCACTTTCCAAGAACCAAACTTTTCTTAACACCCTTTCTGTTCCCAAAGCAAATTCCAATGTTACTTTTCTATCTCACTCATTTTCCTCTCTCAATCTCCGTTTCTCCAAGCCCAATTCTTTATCCTCTTTTGTACCCAAATACTCAGAATCTGAAGCTCCAGTAGCTGAAGTTGAAGCTGACCAAGAAGAGCCTGTTGTGGAAGCCACTAGCTTGGAACCAAAACGGGAAGAAATCTTTGCTGTTGTTATGGTGACGACTCACTTCCATTCATGTTTAAATTTGTGTAGACATATCTGTTTGTTTTCAATTTCGAAATCAATGTGAGGGTACAATTTAGATTTTTATTGAAAAAATTATGAGGTCCCAAATGAAAATTTGAAAATTCAGCGGAAAATGTTTCAGTTGTCTGTTACCTTGAATTTTTTTCTCGAAGGAAATAGGAAATTGATCTATTCCCTCTAAGGGAATGTTACTTTGTTGTATAGAGATCACAACTTTGGTTCAAGATTGTCATGTGCTCAACCTTTGATATCACAAAAGCAGTCGGAATTTTAATAAGGGGAATTCAAAATTACTCAGACCTATTATTGAAGCAATTTCTCGAATTAACCTTTGCCACTAGAACGAAAACTTCCTTTATGTCAAACGGATT</gDNA_template>
            <first_frame> L  S  L  S  N  N  G  N  P  F  P  V  F  Y  I  F  P  L  N  S  T  F  Q  E  P  N  F  S  *  H  P  F  C  S  Q  S  K  F  Q  C  Y  F  S  I  S  L  I  F  L  S  Q  S  P  F  L  Q  A  Q  F  F  I  L  F  C  T  Q  I  L  R  I  *  S  S  S  S  *  S  *  S  *  P  R  R  A  C  C  G  S  H  *  L  G  T  K  T  G  R  N  L  C  C  C  Y  G  D  D  S  L  P  F  M  F  K  F  V  *  T  Y  L  F  V  F  N  F  E  I  N  V  R  V  Q  F  R  F  L  L  K  K  L  *  G  P  K  *  K  F  E  N  S  A  E  N  V  S  V  V  C  Y  L  E  F  F  S  R  R  K  *  E  I  D  L  F  P  L  R  E  C  Y  F  V  V  *  R  S  Q  L  W  F  K  I  V  M  C  S  T  F  D  I  T  K  A  V  G  I  L  I  R  G  I  Q  N  Y  S  D  L  L  L  K  Q  F  L  E  L  T  F  A  T  R  T  K  T  S  F  M  S  N  G   </first_frame>
            <second_frame>  S  H  S  L  T  M  A  T  L  S  L  C  S  T  S  S  P  S  T  A  L  S  K  N  Q  T  F  L  N  T  L  S  V  P  K  A  N  S  N  V  T  F  L  S  H  S  F  S  S  L  N  L  R  F  S  K  P  N  S  L  S  S  F  V  P  K  Y  S  E  S  E  A  P  V  A  E  V  E  A  D  Q  E  E  P  V  V  E  A  T  S  L  E  P  K  R  E  E  I  F  A  V  V  M  V  T  T  H  F  H  S  C  L  N  L  C  R  H  I  C  L  F  S  I  S  K  S  M  *  G  Y  N  L  D  F  Y  *  K  N  Y  E  V  P  N  E  N  L  K  I  Q  R  K  M  F  Q  L  S  V  T  L  N  F  F  L  E  G  N  R  K  L  I  Y  S  L  *  G  N  V  T  L  L  Y  R  D  H  N  F  G  S  R  L  S  C  A  Q  P  L  I  S  Q  K  Q  S  E  F  *  *  G  E  F  K  I  T  Q  T  Y  Y  *  S  N  F  S  N  *  P  L  P  L  E  R  K  L  P  L  C  Q  T  D  </second_frame>
            <third_frame>   L  T  L  *  Q  W  Q  P  F  P  C  V  L  H  L  P  P  Q  Q  H  F  P  R  T  K  L  F  L  T  P  F  L  F  P  K  Q  I  P  M  L  L  F  Y  L  T  H  F  P  L  S  I  S  V  S  P  S  P  I  L  Y  P  L  L  Y  P  N  T  Q  N  L  K  L  Q  *  L  K  L  K  L  T  K  K  S  L  L  W  K  P  L  A  W  N  Q  N  G  K  K  S  L  L  L  L  W  *  R  L  T  S  I  H  V  *  I  C  V  D  I  S  V  C  F  Q  F  R  N  Q  C  E  G  T  I  *  I  F  I  E  K  I  M  R  S  Q  M  K  I  *  K  F  S  G  K  C  F  S  C  L  L  P  *  I  F  F  S  K  E  I  G  N  *  S  I  P  S  K  G  M  L  L  C  C  I  E  I  T  T  L  V  Q  D  C  H  V  L  N  L  *  Y  H  K  S  S  R  N  F  N  K  G  N  S  K  L  L  R  P  I  I  E  A  I  S  R  I  N  L  C  H  *  N  E  N  F  L  Y  V  K  R  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0177K13.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62257" stop="62640"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHSLTMATLSLCSTSSPSTALSKNQTFLNTLSVPKANSNVTFLSHSFSSLNLRFSKPNSLSSFVPKYSESEAPVAEVEADQEEPVVEATSLEPKREEIFAVVMVTTHFHSCLNLCRHICLFSISKSM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="67242" PGL_stop="65642"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67242" e_stop="67165"/>
            <exon e_start="67059" e_stop="66889"/>
            <exon e_start="66102" e_stop="65642"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.971" e_score="0.962"/>
          <exon-intron don_prob="0.972" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="67242" e_stop="67165" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.971">
            <gDNA_intron_boundary i_start="67164" i_stop="67060" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67059" e_stop="66889" e_length="171"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="1.000">
            <gDNA_intron_boundary i_start="66888" i_stop="66103" i_length="786"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="66102" e_stop="65642" e_length="461"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67242" stop="67165"/>
              <exon start="67059" stop="66889"/>
              <exon start="66102" stop="65657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67205" stop="67165"/>
              <exon start="67059" stop="66889"/>
              <exon start="66102" stop="65642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67204" stop="67165"/>
              <exon start="67059" stop="66889"/>
              <exon start="66102" stop="65831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66916" stop="66889"/>
              <exon start="66102" stop="65657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395538" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTCTGTCTAAATTAATTGGCAGACCTTTGGTTAGCTGGTTGTGGCCTGAAAAATTGAGATTCTTCCAGGCAGAG : ATAGCCAAGCGTCGGGATAAGTTGCTCAACTATATGTTGTTTCTGAGAATAACTCCAACATTGCCAAATCTTTTCATCAACTTGGCATCTCCAATAGTGGATATACCATTCCATATTTTCTTCTCGGCCACATTGGTTGGTCTCATTCCAGCCGCATATATTACAGTCAAG : GCTGGCCTAGCTCTTGGTGAGCTGAAGTCTGTTAAAGATCTATACGATCTGAAGACCTTGTCCGTGCTCTTCCTCATTGGTTTTATCTCGATATTACCTACCATCTTGAAGAGGAAGAAAATATACGAATAAAGCTCCCCCCAGAAGGCCAATTCGGATCCTCTTGGAAAGTAACTTATAGAAGATATAGTTTAATTTTATTGTCGGAGCAAATTGGAGAGGCAGAGGCAAGACATAGCAAGATAGATCTAATTTGAAATCTACATTTGACTGTCCAATCCACTGGTAGAATAGTGGAAAACGTTGTGTTCTTTACCAACTCCTTATGTTTTACCCTCTGTTAGTCTGTTTCTGACCCGAACTTACCTGTAGTATTGTTTAAGGTAATGTCAAATGTAGCAGACAGATTTTGATATGAATTCTGATTCAAGATTGATCTTATAGTCATTTCACTGTTCAGT</gDNA_template>
            <first_frame> F  F  L  S  K  L  I  G  R  P  L  V  S  W  L  W  P  E  K  L  R  F  F  Q  A  E  :  I  A  K  R  R  D  K  L  L  N  Y  M  L  F  L  R  I  T  P  T  L  P  N  L  F  I  N  L  A  S  P  I  V  D  I  P  F  H  I  F  F  S  A  T  L  V  G  L  I  P  A  A  Y  I  T  V  K  :  A  G  L  A  L  G  E  L  K  S  V  K  D  L  Y  D  L  K  T  L  S  V  L  F  L  I  G  F  I  S  I  L  P  T  I  L  K  R  K  K  I  Y  E  *  S  S  P  Q  K  A  N  S  D  P  L  G  K  *  L  I  E  D  I  V  *  F  Y  C  R  S  K  L  E  R  Q  R  Q  D  I  A  R  *  I  *  F  E  I  Y  I  *  L  S  N  P  L  V  E  *  W  K  T  L  C  S  L  P  T  P  Y  V  L  P  S  V  S  L  F  L  T  R  T  Y  L  *  Y  C  L  R  *  C  Q  M  *  Q  T  D  F  D  M  N  S  D  S  R  L  I  L  *  S  F  H  C  S   </first_frame>
            <second_frame>  F  F  C  L  N  *  L  A  D  L  W  L  A  G  C  G  L  K  N  *  D  S  S  R  Q  R :   *  P  S  V  G  I  S  C  S  T  I  C  C  F  *  E  *  L  Q  H  C  Q  I  F  S  S  T  W  H  L  Q  *  W  I  Y  H  S  I  F  S  S  R  P  H  W  L  V  S  F  Q  P  H  I  L  Q  S  R :   L  A  *  L  L  V  S  *  S  L  L  K  I  Y  T  I  *  R  P  C  P  C  S  S  S  L  V  L  S  R  Y  Y  L  P  S  *  R  G  R  K  Y  T  N  K  A  P  P  R  R  P  I  R  I  L  L  E  S  N  L  *  K  I  *  F  N  F  I  V  G  A  N  W  R  G  R  G  K  T  *  Q  D  R  S  N  L  K  S  T  F  D  C  P  I  H  W  *  N  S  G  K  R  C  V  L  Y  Q  L  L  M  F  Y  P  L  L  V  C  F  *  P  E  L  T  C  S  I  V  *  G  N  V  K  C  S  R  Q  I  L  I  *  I  L  I  Q  D  *  S  Y  S  H  F  T  V  Q  </second_frame>
            <third_frame>   F  S  V  *  I  N  W  Q  T  F  G  *  L  V  V  A  *  K  I  E  I  L  P  G  R   : D  S  Q  A  S  G  *  V  A  Q  L  Y  V  V  S  E  N  N  S  N  I  A  K  S  F  H  Q  L  G  I  S  N  S  G  Y  T  I  P  Y  F  L  L  G  H  I  G  W  S  H  S  S  R  I  Y  Y  S  Q   : G  W  P  S  S  W  *  A  E  V  C  *  R  S  I  R  S  E  D  L  V  R  A  L  P  H  W  F  Y  L  D  I  T  Y  H  L  E  E  E  E  N  I  R  I  K  L  P  P  E  G  Q  F  G  S  S  W  K  V  T  Y  R  R  Y  S  L  I  L  L  S  E  Q  I  G  E  A  E  A  R  H  S  K  I  D  L  I  *  N  L  H  L  T  V  Q  S  T  G  R  I  V  E  N  V  V  F  F  T  N  S  L  C  F  T  L  C  *  S  V  S  D  P  N  L  P  V  V  L  F  K  V  M  S  N  V  A  D  R  F  *  Y  E  F  *  F  K  I  D  L  I  V  I  S  L  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0177K13.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67242" stop="67165"/>
                    <exon start="67059" stop="66889"/>
                    <exon start="66102" stop="65971"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFLSKLIGRPLVSWLWPEKLRFFQAEIAKRRDKLLNYMLFLRITPTLPNLFINLASPIVDIPFHIFFSATLVGLIPAAYITVKAGLALGELKSVKDLYDLKTLSVLFLIGFISILPTILKRKKIYE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="71235" PGL_stop="71990"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71235" e_stop="71990"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="71235" e_stop="71990" e_length="756"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71235" stop="71890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71235" stop="71612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71246" stop="71990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620300" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTACAACATATCTTCCTCTTCCACTTTTCATTTTCTCCCTTCATCAAGAATCAATGGCTTCTACTCTTACTACTCCATCTCCAACAAATGATGTTGATGATCATCATCAAAGTCATGACACCACATTCTCAACCCCACTTTTCCGGTCACCGCCACCGACGACTCGCCGGAGTACTCCACCATCTCTCTCTTCATCTCCATCTCACTCTTCCAACTCTTCCTTTGGATCATCACTCTCATTCCATGATATTCTTGATGATCATAACTCCCCTATTAGCCCTACAACTCCTCTTCAATTCCCAAAAGGTGTACCCTTTTCTTGGGAAAAAATTCCTGGAATTCCAAAACAAATATTTTCCAAGAAAAATAACACTACTACTTCTCTAGGTCAACTCCTCCCATTAATGCCACCACCTTGTGGAAATGGAAATAATGGTTCATCCAAGAAAATTACTAGTTTTCTTGATGAGTTTTCTCCAAGAAAAAATGTTGCTAAAAGTTTTAGAAAAGATCCATTTTTTGCTGCATTTGTGGAGTGTTCTAAAGATGATCAACAACAATATGATGATGATATTTGGAAAAATTCTTCAAAGGTACCATCAATAAGAAGTTTAAGTGATAGATTTGGATTCATCAGCATGTATACATCTTGCAAAAGAACTTGTACAGTCTCTGAATCCATTGTTTATCTTCCAAGATCAAGAAATAATTATAGTAGGAAGTACTAGTGATCACAAGTCAATAAAATCCTAGATC</gDNA_template>
            <first_frame> L  Q  H  I  F  L  F  H  F  S  F  S  P  F  I  K  N  Q  W  L  L  L  L  L  L  H  L  Q  Q  M  M  L  M  I  I  I  K  V  M  T  P  H  S  Q  P  H  F  S  G  H  R  H  R  R  L  A  G  V  L  H  H  L  S  L  H  L  H  L  T  L  P  T  L  P  L  D  H  H  S  H  S  M  I  F  L  M  I  I  T  P  L  L  A  L  Q  L  L  F  N  S  Q  K  V  Y  P  F  L  G  K  K  F  L  E  F  Q  N  K  Y  F  P  R  K  I  T  L  L  L  L  *  V  N  S  S  H  *  C  H  H  L  V  E  M  E  I  M  V  H  P  R  K  L  L  V  F  L  M  S  F  L  Q  E  K  M  L  L  K  V  L  E  K  I  H  F  L  L  H  L  W  S  V  L  K  M  I  N  N  N  M  M  M  I  F  G  K  I  L  Q  R  Y  H  Q  *  E  V  *  V  I  D  L  D  S  S  A  C  I  H  L  A  K  E  L  V  Q  S  L  N  P  L  F  I  F  Q  D  Q  E  I  I  I  V  G  S  T  S  D  H  K  S  I  K  S  *  I </first_frame>
            <second_frame>  Y  N  I  S  S  S  S  T  F  H  F  L  P  S  S  R  I  N  G  F  Y  S  Y  Y  S  I  S  N  K  *  C  *  *  S  S  S  K  S  *  H  H  I  L  N  P  T  F  P  V  T  A  T  D  D  S  P  E  Y  S  T  I  S  L  F  I  S  I  S  L  F  Q  L  F  L  W  I  I  T  L  I  P  *  Y  S  *  *  S  *  L  P  Y  *  P  Y  N  S  S  S  I  P  K  R  C  T  L  F  L  G  K  N  S  W  N  S  K  T  N  I  F  Q  E  K  *  H  Y  Y  F  S  R  S  T  P  P  I  N  A  T  T  L  W  K  W  K  *  W  F  I  Q  E  N  Y  *  F  S  *  *  V  F  S  K  K  K  C  C  *  K  F  *  K  R  S  I  F  C  C  I  C  G  V  F  *  R  *  S  T  T  I  *  *  *  Y  L  E  K  F  F  K  G  T  I  N  K  K  F  K  *  *  I  W  I  H  Q  H  V  Y  I  L  Q  K  N  L  Y  S  L  *  I  H  C  L  S  S  K  I  K  K  *  L  *  *  E  V  L  V  I  T  S  Q  *  N  P  R   </second_frame>
            <third_frame>   T  T  Y  L  P  L  P  L  F  I  F  S  L  H  Q  E  S  M  A  S  T  L  T  T  P  S  P  T  N  D  V  D  D  H  H  Q  S  H  D  T  T  F  S  T  P  L  F  R  S  P  P  P  T  T  R  R  S  T  P  P  S  L  S  S  S  P  S  H  S  S  N  S  S  F  G  S  S  L  S  F  H  D  I  L  D  D  H  N  S  P  I  S  P  T  T  P  L  Q  F  P  K  G  V  P  F  S  W  E  K  I  P  G  I  P  K  Q  I  F  S  K  K  N  N  T  T  T  S  L  G  Q  L  L  P  L  M  P  P  P  C  G  N  G  N  N  G  S  S  K  K  I  T  S  F  L  D  E  F  S  P  R  K  N  V  A  K  S  F  R  K  D  P  F  F  A  A  F  V  E  C  S  K  D  D  Q  Q  Q  Y  D  D  D  I  W  K  N  S  S  K  V  P  S  I  R  S  L  S  D  R  F  G  F  I  S  M  Y  T  S  C  K  R  T  C  T  V  S  E  S  I  V  Y  L  P  R  S  R  N  N  Y  S  R  K  Y  *  *  S  Q  V  N  K  I  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0177K13.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71237" stop="71962"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTYLPLPLFIFSLHQESMASTLTTPSPTNDVDDHHQSHDTTFSTPLFRSPPPTTRRSTPPSLSSSPSHSSNSSFGSSLSFHDILDDHNSPISPTTPLQFPKGVPFSWEKIPGIPKQIFSKKNNTTTSLGQLLPLMPPPCGNGNNGSSKKITSFLDEFSPRKNVAKSFRKDPFFAAFVECSKDDQQQYDDDIWKNSSKVPSIRSLSDRFGFISMYTSCKRTCTVSESIVYLPRSRNNYSRKY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="74489" PGL_stop="74870"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74489" e_stop="74870"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74489" e_stop="74870" e_length="382"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74489" stop="74870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74490" stop="74870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74490" stop="74870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372332" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAAAGAAAAGCCTTTTGATGAAGACGATAGCGATGATGATGATGCCGATGACAAAGAAAATGACCCATCAAAGAGTCATCATCATGGGGATCATTGCTGTTCTAAACAGGATCATGGAGGAGAAGCTAGTACGAGTTTTTCGGAAGATCACTGATGTATTTGACTTGTAAGTTTGTTGAACTTTTTGTTAAGAAGGAAAAAAATGTTATTTTTGGGGTAAATTTGTTAATTGGTATTATTTGAGATCTTCTGTTGTTGGGAATCTGATTGAAATTTATGTTTCGATGACATGAAGTTGAACAATTGATATTAGTGTTACTTCTTATACTATTCTGCTTGTAAGAAAAAAATTTCATTTTTGAAGTGAATTTGAGTATTTG</gDNA_template>
            <first_frame> H  K  E  K  P  F  D  E  D  D  S  D  D  D  D  A  D  D  K  E  N  D  P  S  K  S  H  H  H  G  D  H  C  C  S  K  Q  D  H  G  G  E  A  S  T  S  F  S  E  D  H  *  C  I  *  L  V  S  L  L  N  F  L  L  R  R  K  K  M  L  F  L  G  *  I  C  *  L  V  L  F  E  I  F  C  C  W  E  S  D  *  N  L  C  F  D  D  M  K  L  N  N  *  Y  *  C  Y  F  L  Y  Y  S  A  C  K  K  K  I  S  F  L  K  *  I  *  V  F  </first_frame>
            <second_frame>  T  K  K  S  L  L  M  K  T  I  A  M  M  M  M  P  M  T  K  K  M  T  H  Q  R  V  I  I  M  G  I  I  A  V  L  N  R  I  M  E  E  K  L  V  R  V  F  R  K  I  T  D  V  F  D  L  *  V  C  *  T  F  C  *  E  G  K  K  C  Y  F  W  G  K  F  V  N  W  Y  Y  L  R  S  S  V  V  G  N  L  I  E  I  Y  V  S  M  T  *  S  *  T  I  D  I  S  V  T  S  Y  T  I  L  L  V  R  K  K  F  H  F  *  S  E  F  E  Y  L </second_frame>
            <third_frame>   Q  R  K  A  F  *  *  R  R  *  R  *  *  *  C  R  *  Q  R  K  *  P  I  K  E  S  S  S  W  G  S  L  L  F  *  T  G  S  W  R  R  S  *  Y  E  F  F  G  R  S  L  M  Y  L  T  C  K  F  V  E  L  F  V  K  K  E  K  N  V  I  F  G  V  N  L  L  I  G  I  I  *  D  L  L  L  L  G  I  *  L  K  F  M  F  R  *  H  E  V  E  Q  L  I  L  V  L  L  L  I  L  F  C  L  *  E  K  N  F  I  F  E  V  N  L  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0177K13.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="77925" PGL_stop="77321"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77925" e_stop="77321"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="77925" e_stop="77321" e_length="605"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77925" stop="77321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542672" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAATGAGTTTTAGTTCATTATAATGTCTTGCACGAAAGGACTCTTGGAGTTCTAAATTTGCATTGAGGCAGATGCAGGGAACAATCCAGGTTACTTCTCATGTTTTTTGGTGGAAGGAAATATCACCTGCATGATTTTTGAGGGTAGAACTAAAATTTGAAGGTGAAAAAAAAAACAGAATTATCCTAAAATCTTTAGAAGAACACAAATTTGAATTTTCTGTTACAATTTCTGAGAGGAAAAAAAAACATGGTTGTACATGTTGAATTCATCTTTCTCATTATGTCATCCTTTTCAAGGCAAAATCTTTGAAGTCGAGATCATTTAATCCTGTGTGAATTTACGAGTTGTCTCCAAGTGATAAACATTGTTAGCTTTTAGTTTCTGTTAGGTGATAGAATAGTGTATTGAAGTATGATAACACAACAACTGTTGTTGAACTCAATACCATCTAAGTTTTCTTATTGTCTTTGTCCACTCTATTTTATTTCGTAGGACTGGGCAGGTATAGGTGCAGATGGAGGAGGAGCTAGACTTTAATCTATCCCAAAACACTTTCTTCGTGTGTTTCAAAAGGTTATAAAACAAAATATGATACCATTGA</gDNA_template>
            <first_frame> I  M  S  F  S  S  L  *  C  L  A  R  K  D  S  W  S  S  K  F  A  L  R  Q  M  Q  G  T  I  Q  V  T  S  H  V  F  W  W  K  E  I  S  P  A  *  F  L  R  V  E  L  K  F  E  G  E  K  K  N  R  I  I  L  K  S  L  E  E  H  K  F  E  F  S  V  T  I  S  E  R  K  K  K  H  G  C  T  C  *  I  H  L  S  H  Y  V  I  L  F  K  A  K  S  L  K  S  R  S  F  N  P  V  *  I  Y  E  L  S  P  S  D  K  H  C  *  L  L  V  S  V  R  *  *  N  S  V  L  K  Y  D  N  T  T  T  V  V  E  L  N  T  I  *  V  F  L  L  S  L  S  T  L  F  Y  F  V  G  L  G  R  Y  R  C  R  W  R  R  S  *  T  L  I  Y  P  K  T  L  S  S  C  V  S  K  G  Y  K  T  K  Y  D  T  I   </first_frame>
            <second_frame>  *  *  V  L  V  H  Y  N  V  L  H  E  R  T  L  G  V  L  N  L  H  *  G  R  C  R  E  Q  S  R  L  L  L  M  F  F  G  G  R  K  Y  H  L  H  D  F  *  G  *  N  *  N  L  K  V  K  K  K  T  E  L  S  *  N  L  *  K  N  T  N  L  N  F  L  L  Q  F  L  R  G  K  K  N  M  V  V  H  V  E  F  I  F  L  I  M  S  S  F  S  R  Q  N  L  *  S  R  D  H  L  I  L  C  E  F  T  S  C  L  Q  V  I  N  I  V  S  F  *  F  L  L  G  D  R  I  V  Y  *  S  M  I  T  Q  Q  L  L  L  N  S  I  P  S  K  F  S  Y  C  L  C  P  L  Y  F  I  S  *  D  W  A  G  I  G  A  D  G  G  G  A  R  L  *  S  I  P  K  H  F  L  R  V  F  Q  K  V  I  K  Q  N  M  I  P  L  </second_frame>
            <third_frame>   N  E  F  *  F  I  I  M  S  C  T  K  G  L  L  E  F  *  I  C  I  E  A  D  A  G  N  N  P  G  Y  F  S  C  F  L  V  E  G  N  I  T  C  M  I  F  E  G  R  T  K  I  *  R  *  K  K  K  Q  N  Y  P  K  I  F  R  R  T  Q  I  *  I  F  C  Y  N  F  *  E  E  K  K  T  W  L  Y  M  L  N  S  S  F  S  L  C  H  P  F  Q  G  K  I  F  E  V  E  I  I  *  S  C  V  N  L  R  V  V  S  K  *  *  T  L  L  A  F  S  F  C  *  V  I  E  *  C  I  E  V  *  *  H  N  N  C  C  *  T  Q  Y  H  L  S  F  L  I  V  F  V  H  S  I  L  F  R  R  T  G  Q  V  *  V  Q  M  E  E  E  L  D  F  N  L  S  Q  N  T  F  F  V  C  F  K  R  L  *  N  K  I  *  Y  H  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0177K13.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="78971" PGL_stop="78381"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78971" e_stop="78381"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="78971" e_stop="78381" e_length="591"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78971" stop="78381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78971" stop="78476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301564" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGCAAACCTCTAGAACAATATCTGCCCCTTTCCGGACACAAAATTAGGCGGAAATTGTGGCGGGACGTCGCACTAGTCTGTTTTCAAAACTCGTTTTGGTGGAAGAAAACCCCTTAGTTAGTCCAAAGGTTCTATCCTAAAAGTTTTGATGATAACAAACTTATAGCGTTCAAATCTTGTGATTGTAGTGATAACCAGAAACTCACAAGTAAGTCCACATTCAAAGCCAAGATTGGATCAAAAGTATATAATCAATTTTTTGCTGAATTATAGTCAACCACAGGTGGTATGTTACAGTCATGGTTGCTATCCATCCGGACTTATATTAATCATTACATGAAAACCAACTGATGGACAGACAGAAAGTTGTTTGGAAGGTTATCTGCAATATTTGACAATCATCAGTAAGTCAAAGGAATTGGTTACATAAGGCTGAGTGTTTCCATTGGCAAATGCTTAAACCCCGGTGCAGTCAGAACAAGCCAGGATGAAGTGGTATGGTGACCTTAGGGGGACTGAGAGACATGGAAACTAGGTTTACCCACAGGCAGACTTGTATGGCCTTGAGGAGAAGTCTTAAAGATTTGTTTG</gDNA_template>
            <first_frame> R  K  P  L  E  Q  Y  L  P  L  S  G  H  K  I  R  R  K  L  W  R  D  V  A  L  V  C  F  Q  N  S  F  W  W  K  K  T  P  *  L  V  Q  R  F  Y  P  K  S  F  D  D  N  K  L  I  A  F  K  S  C  D  C  S  D  N  Q  K  L  T  S  K  S  T  F  K  A  K  I  G  S  K  V  Y  N  Q  F  F  A  E  L  *  S  T  T  G  G  M  L  Q  S  W  L  L  S  I  R  T  Y  I  N  H  Y  M  K  T  N  *  W  T  D  R  K  L  F  G  R  L  S  A  I  F  D  N  H  Q  *  V  K  G  I  G  Y  I  R  L  S  V  S  I  G  K  C  L  N  P  G  A  V  R  T  S  Q  D  E  V  V  W  *  P  *  G  D  *  E  T  W  K  L  G  L  P  T  G  R  L  V  W  P  *  G  E  V  L  K  I  C  L </first_frame>
            <second_frame>  A  N  L  *  N  N  I  C  P  F  P  D  T  K  L  G  G  N  C  G  G  T  S  H  *  S  V  F  K  T  R  F  G  G  R  K  P  L  S  *  S  K  G  S  I  L  K  V  L  M  I  T  N  L  *  R  S  N  L  V  I  V  V  I  T  R  N  S  Q  V  S  P  H  S  K  P  R  L  D  Q  K  Y  I  I  N  F  L  L  N  Y  S  Q  P  Q  V  V  C  Y  S  H  G  C  Y  P  S  G  L  I  L  I  I  T  *  K  P  T  D  G  Q  T  E  S  C  L  E  G  Y  L  Q  Y  L  T  I  I  S  K  S  K  E  L  V  T  *  G  *  V  F  P  L  A  N  A  *  T  P  V  Q  S  E  Q  A  R  M  K  W  Y  G  D  L  R  G  T  E  R  H  G  N  *  V  Y  P  Q  A  D  L  Y  G  L  E  E  K  S  *  R  F  V   </second_frame>
            <third_frame>   Q  T  S  R  T  I  S  A  P  F  R  T  Q  N  *  A  E  I  V  A  G  R  R  T  S  L  F  S  K  L  V  L  V  E  E  N  P  L  V  S  P  K  V  L  S  *  K  F  *  *  *  Q  T  Y  S  V  Q  I  L  *  L  *  *  *  P  E  T  H  K  *  V  H  I  Q  S  Q  D  W  I  K  S  I  *  S  I  F  C  *  I  I  V  N  H  R  W  Y  V  T  V  M  V  A  I  H  P  D  L  Y  *  S  L  H  E  N  Q  L  M  D  R  Q  K  V  V  W  K  V  I  C  N  I  *  Q  S  S  V  S  Q  R  N  W  L  H  K  A  E  C  F  H  W  Q  M  L  K  P  R  C  S  Q  N  K  P  G  *  S  G  M  V  T  L  G  G  L  R  D  M  E  T  R  F  T  H  R  Q  T  C  M  A  L  R  R  S  L  K  D  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0177K13.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="82322" PGL_stop="81946"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82322" e_stop="81946"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="82322" e_stop="81946" e_length="377"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82322" stop="81946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442841" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCGGATGAGATATATCTCAAGCCAGGTTGAGAACAAGATCCGCATCGTCGCTTTTTCAGCTTCCCTATCTAATGCCAAGGATTTGGGAGAATGGATTGGGGCTACATCTCACGGGCTCTTCAACTTCCCTCCTCCTGTCAGGCCTGTGCCACTGGAAATACACATTCAGGGTGTTGATATTGCAAACTTTGAAGCTAGGATGCATGTCATGACAAAACCCACATATACTGCAGTAGTCCAACATGCAAGGAAAGGAAAACCCGGCAATTGTGTATGTTCCCACAAGGAAGCATACTCACTTGACTGCTCTAGACCTGATGACACATTCAAGCATGGACAGCGAAGACACGCCTATATTTCTTCTACGATCTTCAGA</gDNA_template>
            <first_frame> L  G  *  D  I  S  Q  A  R  L  R  T  R  S  A  S  S  L  F  Q  L  P  Y  L  M  P  R  I  W  E  N  G  L  G  L  H  L  T  G  S  S  T  S  L  L  L  S  G  L  C  H  W  K  Y  T  F  R  V  L  I  L  Q  T  L  K  L  G  C  M  S  *  Q  N  P  H  I  L  Q  *  S  N  M  Q  G  K  E  N  P  A  I  V  Y  V  P  T  R  K  H  T  H  L  T  A  L  D  L  M  T  H  S  S  M  D  S  E  D  T  P  I  F  L  L  R  S  S   </first_frame>
            <second_frame>  S  D  E  I  Y  L  K  P  G  *  E  Q  D  P  H  R  R  F  F  S  F  P  I  *  C  Q  G  F  G  R  M  D  W  G  Y  I  S  R  A  L  Q  L  P  S  S  C  Q  A  C  A  T  G  N  T  H  S  G  C  *  Y  C  K  L  *  S  *  D  A  C  H  D  K  T  H  I  Y  C  S  S  P  T  C  K  E  R  K  T  R  Q  L  C  M  F  P  Q  G  S  I  L  T  *  L  L  *  T  *  *  H  I  Q  A  W  T  A  K  T  R  L  Y  F  F  Y  D  L  Q  </second_frame>
            <third_frame>   R  M  R  Y  I  S  S  Q  V  E  N  K  I  R  I  V  A  F  S  A  S  L  S  N  A  K  D  L  G  E  W  I  G  A  T  S  H  G  L  F  N  F  P  P  P  V  R  P  V  P  L  E  I  H  I  Q  G  V  D  I  A  N  F  E  A  R  M  H  V  M  T  K  P  T  Y  T  A  V  V  Q  H  A  R  K  G  K  P  G  N  C  V  C  S  H  K  E  A  Y  S  L  D  C  S  R  P  D  D  T  F  K  H  G  Q  R  R  H  A  Y  I  S  S  T  I  F  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0177K13.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82320" stop="81946"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMRYISSQVENKIRIVAFSASLSNAKDLGEWIGATSHGLFNFPPPVRPVPLEIHIQGVDIANFEARMHVMTKPTYTAVVQHARKGKPGNCVCSHKEAYSLDCSRPDDTFKHGQRRHAYISSTIFR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="89010" PGL_stop="93946"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89010" e_stop="89197"/>
            <exon e_start="90451" e_stop="90554"/>
            <exon e_start="91553" e_stop="91923"/>
            <exon e_start="92554" e_stop="92861"/>
            <exon e_start="93319" e_stop="93946"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.859" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.490" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89010" e_stop="89197" e_length="188"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.859">
            <gDNA_intron_boundary i_start="89198" i_stop="90450" i_length="1253"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90451" e_stop="90554" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.976">
            <gDNA_intron_boundary i_start="90555" i_stop="91552" i_length="998"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91553" e_stop="91923" e_length="371"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.490">
            <gDNA_intron_boundary i_start="91924" i_stop="92553" i_length="630"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="92554" e_stop="92861" e_length="308"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92862" i_stop="93318" i_length="457"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="93319" e_stop="93946" e_length="628"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89010" stop="89197"/>
              <exon start="90451" stop="90473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89016" stop="89197"/>
              <exon start="90451" stop="90554"/>
              <exon start="91553" stop="91923"/>
              <exon start="92554" stop="92841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89016" stop="89197"/>
              <exon start="90451" stop="90554"/>
              <exon start="91553" stop="91794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89016" stop="89197"/>
              <exon start="90451" stop="90554"/>
              <exon start="91553" stop="91755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89026" stop="89197"/>
              <exon start="90451" stop="90554"/>
              <exon start="91553" stop="91923"/>
              <exon start="92554" stop="92575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89027" stop="89197"/>
              <exon start="90451" stop="90554"/>
              <exon start="91553" stop="91913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89027" stop="89197"/>
              <exon start="90451" stop="90554"/>
              <exon start="91553" stop="91771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89120" stop="89197"/>
              <exon start="90451" stop="90554"/>
              <exon start="91553" stop="91923"/>
              <exon start="92554" stop="92775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90504" stop="90554"/>
              <exon start="91553" stop="91923"/>
              <exon start="92554" stop="92861"/>
              <exon start="93319" stop="93455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91561" stop="91923"/>
              <exon start="92554" stop="92861"/>
              <exon start="93319" stop="93507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92617" stop="92861"/>
              <exon start="93319" stop="93795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92617" stop="92861"/>
              <exon start="93319" stop="93748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92787" stop="92861"/>
              <exon start="93319" stop="93946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92794" stop="92861"/>
              <exon start="93319" stop="93812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93319" stop="93946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93352" stop="93908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263743" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93358" stop="93864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93481" stop="93864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93554" stop="93908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262080" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTGGTTTCACGGCCGTTCATCACGGCGGCGGAGTCGGAACAGCAGAAGCAACAGTTGGGCATAGACAGCGGTAAAGTATTGGAACTTGATGAATCTAACTTTGATGCTGCAATTTCCAGTTTTGATTATATTTTGGTCGATTTCTACGCTCCTTGGTGTGGTCACTGCAAACGACTTGCACCTCAG : TTGGACAAAGCTGCTAGCATACTTGCTGATTTGAAGAAGCCCATAAGTATTGCAAAAATAGATGCTGACAAGTACAAACGTGTTGGTTCAAAATATGGCATTGA : TGGATATCCAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAATCTGCCATATCACATTTTGCAGTAAAATACAAGAAGAGAGCATGGTTTTCTGTGGCAAAAGATTTCTCGGATAAGACCATGGAATTCTATGATTTTGACAAGGTACCTGCTTTGGTAGCTCGTCATCCAAACTATGATGAACAAAGCATCTTCTATGGCCCCTTTGAAG : AAAATTTTGTTGAGGATTATATCAAGCAGAGTTTGCTCCCACTGACTTTGCCCATTACTGAAGAAACTCTGAGATTGCTGAAAGATGATGAGAGAAAAGTTATTCTAACAATTTTGGAAGATGAAACTGATGATAGGTCTAAGAAATTATTGAAGCTCCTGAAAGCTGCTGCATCTGCAAACCGCGACTTCGTGTTTGTTTTTGTTGGGTTCAAGCAATGGCAAGGGTTTGCTGAATCATTTGACGTTTCTAAGAAAACTAAGCTGCCAAAAATGGTTGTTTGGGATGGCGATGAGGAGTACTTTTCA : GTTGTTGGCTCTGAGAGCGTTGAAGATGAAGATCAGGGGTCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATCATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGATAGGTTTGGGAACAGTGACCATCATAGTGTTTGTGGTTGCGGTGGTGATGATTATCCAGTCTTTGAAAGAGGAACCCTTAACTGTTGGTACAAGGGACGAGGGAGATCATCCAAGCAGCTCCACCTCTCAGACAGAAGCCAGACAACCACTTCGTTCTGGAGAGAAACAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCACAGCCCTTGTTTTCTTATTAAAGTTATTTGAACAACATACTGTAGGATTACTGTAACCAGAAGTGTGGAGGGAAGAGTTTGTGCTTCTATCTGTGTTATTGAATTTAACAAATGTGGAGGCAAATTTAATTTTAGCACTGTATAAAATGTGTTTGAAACAATCTTTTTTAGCTAATATCACTGCTTGTTTGATGATTA</gDNA_template>
            <first_frame> F  W  F  H  G  R  S  S  R  R  R  S  R  N  S  R  S  N  S  W  A  *  T  A  V  K  Y  W  N  L  M  N  L  T  L  M  L  Q  F  P  V  L  I  I  F  W  S  I  S  T  L  L  G  V  V  T  A  N  D  L  H  L  S :   W  T  K  L  L  A  Y  L  L  I  *  R  S  P  *  V  L  Q  K  *  M  L  T  S  T  N  V  L  V  Q  N  M  A  L   : M  D  I  Q  L  *  R  Y  L  C  M  V  F  Q  Q  N  I  M  D  Q  E  K  Q  I  Y  L  Y  D  S  *  R  S  L  L  L  L  M  W  P  Y  S  I  L  I  Q  P  L  V  N  L  L  K  Q  P  A  L  V  S  L  Y  L  *  A  L  V  *  M  N  L  P  Y  H  I  L  Q  *  N  T  R  R  E  H  G  F  L  W  Q  K  I  S  R  I  R  P  W  N  S  M  I  L  T  R  Y  L  L  W  *  L  V  I  Q  T  M  M  N  K  A  S  S  M  A  P  L  K  :  K  I  L  L  R  I  I  S  S  R  V  C  S  H  *  L  C  P  L  L  K  K  L  *  D  C  *  K  M  M  R  E  K  L  F  *  Q  F  W  K  M  K  L  M  I  G  L  R  N  Y  *  S  S  *  K  L  L  H  L  Q  T  A  T  S  C  L  F  L  L  G  S  S  N  G  K  G  L  L  N  H  L  T  F  L  R  K  L  S  C  Q  K  W  L  F  G  M  A  M  R  S  T  F  Q :   L  L  A  L  R  A  L  K  M  K  I  R  G  P  K  L  H  I  L  F  K  D  T  K  T  E  I  S  Y  R  N  V  L  A  L  V  L  S  W  V  S  *  T  Q  *  *  V  W  E  Q  *  P  S  *  C  L  W  L  R  W  *  *  L  S  S  L  *  K  R  N  P  *  L  L  V  Q  G  T  R  E  I  I  Q  A  A  P  P  L  R  Q  K  P  D  N  H  F  V  L  E  R  N  K  T  R  K  I  K  F  Y  T  S  Q  T  S  D  S  *  L  E  K  S  S  T  G  K  P  N  Y  T  *  V  *  E  C  C  *  V  S  S  S  Q  R  S  Q  P  L  F  S  Y  *  S  Y  L  N  N  I  L  *  D  Y  C  N  Q  K  C  G  G  K  S  L  C  F  Y  L  C  Y  *  I  *  Q  M  W  R  Q  I  *  F  *  H  C  I  K  C  V  *  N  N  L  F  *  L  I  S  L  L  V  *  *  L </first_frame>
            <second_frame>  F  G  F  T  A  V  H  H  G  G  G  V  G  T  A  E  A  T  V  G  H  R  Q  R  *  S  I  G  T  *  *  I  *  L  *  C  C  N  F  Q  F  *  L  Y  F  G  R  F  L  R  S  L  V  W  S  L  Q  T  T  C  T  S   : V  G  Q  S  C  *  H  T  C  *  F  E  E  A  H  K  Y  C  K  N  R  C  *  Q  V  Q  T  C  W  F  K  I  W  H  *  :  W  I  S  N  F  K  D  I  Y  A  W  C  S  N  R  I  L  W  T  K  K  S  R  F  T  C  T  I  L  E  E  V  C  C  C  *  C  G  H  T  Q  F  *  F  S  H  *  *  I  C  *  S  S  R  H  *  F  P  Y  I  Y  R  L  W  F  E  *  I  C  H  I  T  F  C  S  K  I  Q  E  E  S  M  V  F  C  G  K  R  F  L  G  *  D  H  G  I  L  *  F  *  Q  G  T  C  F  G  S  S  S  S  K  L  *  *  T  K  H  L  L  W  P  L  *  R :   K  F  C  *  G  L  Y  Q  A  E  F  A  P  T  D  F  A  H  Y  *  R  N  S  E  I  A  E  R  *  *  E  K  S  Y  S  N  N  F  G  R  *  N  *  *  *  V  *  E  I  I  E  A  P  E  S  C  C  I  C  K  P  R  L  R  V  C  F  C  W  V  Q  A  M  A  R  V  C  *  I  I  *  R  F  *  E  N  *  A  A  K  N  G  C  L  G  W  R  *  G  V  L  F   : S  C  W  L  *  E  R  *  R  *  R  S  G  V  P  N  Y  T  F  Y  S  R  I  Q  R  R  K  Y  H  T  E  T  Y  *  L  W  F  F  H  G  F  H  K  L  N  D  R  F  G  N  S  D  H  H  S  V  C  G  C  G  G  D  D  Y  P  V  F  E  R  G  T  L  N  C  W  Y  K  G  R  G  R  S  S  K  Q  L  H  L  S  D  R  S  Q  T  T  T  S  F  W  R  E  T  R  Q  G  R  L  S  F  T  P  V  R  P  Q  I  V  S  L  R  N  P  R  Q  E  N  Q  T  T  R  R  S  K  S  A  V  K  F  H  P  H  N  D  H  S  P  C  F  L  I  K  V  I  *  T  T  Y  C  R  I  T  V  T  R  S  V  E  G  R  V  C  A  S  I  C  V  I  E  F  N  K  C  G  G  K  F  N  F  S  T  V  *  N  V  F  E  T  I  F  F  S  *  Y  H  C  L  F  D  D   </second_frame>
            <third_frame>   L  V  S  R  P  F  I  T  A  A  E  S  E  Q  Q  K  Q  Q  L  G  I  D  S  G  K  V  L  E  L  D  E  S  N  F  D  A  A  I  S  S  F  D  Y  I  L  V  D  F  Y  A  P  W  C  G  H  C  K  R  L  A  P  Q  :  L  D  K  A  A  S  I  L  A  D  L  K  K  P  I  S  I  A  K  I  D  A  D  K  Y  K  R  V  G  S  K  Y  G  I  D :   G  Y  P  T  L  K  I  F  M  H  G  V  P  T  E  Y  Y  G  P  R  K  A  D  L  L  V  R  F  L  K  K  F  V  A  A  D  V  A  I  L  N  S  D  S  A  I  S  E  F  V  E  A  A  G  T  S  F  P  I  F  I  G  F  G  L  N  E  S  A  I  S  H  F  A  V  K  Y  K  K  R  A  W  F  S  V  A  K  D  F  S  D  K  T  M  E  F  Y  D  F  D  K  V  P  A  L  V  A  R  H  P  N  Y  D  E  Q  S  I  F  Y  G  P  F  E   : E  N  F  V  E  D  Y  I  K  Q  S  L  L  P  L  T  L  P  I  T  E  E  T  L  R  L  L  K  D  D  E  R  K  V  I  L  T  I  L  E  D  E  T  D  D  R  S  K  K  L  L  K  L  L  K  A  A  A  S  A  N  R  D  F  V  F  V  F  V  G  F  K  Q  W  Q  G  F  A  E  S  F  D  V  S  K  K  T  K  L  P  K  M  V  V  W  D  G  D  E  E  Y  F  S  :  V  V  G  S  E  S  V  E  D  E  D  Q  G  S  Q  I  T  H  F  I  Q  G  Y  K  D  G  N  I  I  Q  K  R  I  S  S  G  S  F  M  G  F  I  N  S  M  I  G  L  G  T  V  T  I  I  V  F  V  V  A  V  V  M  I  I  Q  S  L  K  E  E  P  L  T  V  G  T  R  D  E  G  D  H  P  S  S  S  T  S  Q  T  E  A  R  Q  P  L  R  S  G  E  K  Q  D  K  E  D  *  V  L  H  Q  S  D  L  R  *  L  A  *  E  I  L  D  R  K  T  K  L  H  V  G  L  R  V  L  L  S  F  I  L  T  T  I  T  A  L  V  F  L  L  K  L  F  E  Q  H  T  V  G  L  L  *  P  E  V  W  R  E  E  F  V  L  L  S  V  L  L  N  L  T  N  V  E  A  N  L  I  L  A  L  Y  K  M  C  L  K  Q  S  F  L  A  N  I  T  A  C  L  M  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0177K13.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89012" stop="89197"/>
                    <exon start="90451" stop="90554"/>
                    <exon start="91553" stop="91923"/>
                    <exon start="92554" stop="92861"/>
                    <exon start="93319" stop="93639"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1287</number_coding_nucleotides>
                  <number_encoded_amino_acids>429</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVSRPFITAAESEQQKQQLGIDSGKVLELDESNFDAAISSFDYILVDFYAPWCGHCKRLAPQLDKAASILADLKKPISIAKIDADKYKRVGSKYGIDGYPTLKIFMHGVPTEYYGPRKADLLVRFLKKFVAADVAILNSDSAISEFVEAAGTSFPIFIGFGLNESAISHFAVKYKKRAWFSVAKDFSDKTMEFYDFDKVPALVARHPNYDEQSIFYGPFEENFVEDYIKQSLLPLTLPITEETLRLLKDDERKVILTILEDETDDRSKKLLKLLKAAASANRDFVFVFVGFKQWQGFAESFDVSKKTKLPKMVVWDGDEEYFSVVGSESVEDEDQGSQITHFIQGYKDGNIIQKRISSGSFMGFINSMIGLGTVTIIVFVVAVVMIIQSLKEEPLTVGTRDEGDHPSSSTSQTEARQPLRSGEKQDKED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="99090" PGL_stop="94103"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99090" e_stop="98986"/>
            <exon e_start="98449" e_stop="98219"/>
            <exon e_start="96603" e_stop="96202"/>
            <exon e_start="95132" e_stop="94103"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.865" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.226" e_score="0.993"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99090" e_stop="98986" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.985">
            <gDNA_intron_boundary i_start="98985" i_stop="98450" i_length="536"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98449" e_stop="98219" e_length="231"/>
          </exon>
          <intron i_serial="2" don_prob="0.865" acc_prob="0.000">
            <gDNA_intron_boundary i_start="98218" i_stop="96604" i_length="1615"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="96603" e_stop="96202" e_length="402"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.226">
            <gDNA_intron_boundary i_start="96201" i_stop="95133" i_length="1069"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="95132" e_stop="94103" e_length="1030"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99090" stop="98986"/>
              <exon start="98449" stop="98219"/>
              <exon start="96603" stop="96202"/>
              <exon start="95132" stop="94995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98390" stop="98219"/>
              <exon start="96603" stop="96202"/>
              <exon start="95132" stop="95059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98390" stop="98219"/>
              <exon start="96603" stop="96404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96503" stop="96263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96501" stop="96202"/>
              <exon start="95132" stop="94876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96501" stop="96202"/>
              <exon start="95132" stop="94877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96501" stop="96202"/>
              <exon start="95132" stop="94880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96501" stop="96202"/>
              <exon start="95132" stop="94890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96501" stop="96202"/>
              <exon start="95132" stop="94892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96501" stop="96202"/>
              <exon start="95132" stop="94905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96468" stop="96202"/>
              <exon start="95132" stop="94705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95036" stop="94758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94772" stop="94103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94637" stop="94116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431330" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTGATATGTTTTGTGTCTTTGACGGCTTCTCGAGCTACTGGTAGTGTGATTTTGATTGGAAATAACAGGACTTTGTCTTTTGAAGATATTGAAGCTAATTTTG : CTCCCTCACCAAAGGGTTCAGGAAAATGTGGGAGGTTGTATATTGCGGAGCCTTTGGATGCCTGCTCAACCTTGACTAACAAGATTGAACCAACTAATAACTTCACAAAAGAACCATTTGTTCTGATAATCAGGGGTGGATGTAGCTTTGAAGATAAAGTTAGAAAAGCACAAGCTGCAGGTTTTAAAGCAGCCATTATCTATGATAGTGGATATGGAGATATAATTGCAA : TGGCAGGAACCTCTGCTGGTGTGAAGATACTGGCAGTTTTCATTTCAAAAGCTTCTGGAGAAGCACTCACACAGTATGCTGGCTCGGATACGGAAGTATGGTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACA : AATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATCTATCTCTAGCTCTCGTAACCAGCATTCACTTTGGTCTTACCAGTCACCACATCTTGCTATAAGCCGGAGTTCACTGGACCTTCAAAATGCATCTTCTCAAAGATCTCGTGCAGCTTACTTAATTTCATCCAACTCATTGGGTTATCCTTGTTTATCACCTCTTAATTCAAGATATGGGTCTGCATACATTCCTAGTCCTAGCAATCCCTCGTCGAGCTATATGGGATCAACAAGTCGGCAGCCTAACCCACTGCATCACAGTGAATCAATTACAAGCTTTTCACCATTTGCTTCAGCTAACTCTCTTCCTGGATGTGAGTCGTGATTTAATTGATCATGGCAAACATTAATCAAATTGTTGAAGTCCCTTGCAGGGAACTCAGGTTGGGTTATTCTGACCTCAAATTCACGTGAAGACAATAGAGCTGATTCGTGTTGGTTGCTTTGACATCTGGACGGAGGAATACAACAGCTAGCTTCATTGCTCAACACTTCTGGGATATTGGTTTAGTAGTTGATAGGTTTGATAATTTTGAGTTTTTTACAGAGTGTACATTCTTAAAGATGGGTGTATTACTGTACGCATTGCGCCTTCTTTTGTTTATTGCTTTTTTTTTTCTTCTTACCCTCGATTTCTCTATAATAGTGATGTTTTTAGCCATGTCCACCTGACAGATGGTTGAGGCCTGTAGTTTGCATGTAAATATGAATGCCCTTGAGGTGACTAAATCTAGTCTTTTACTTGTTTTAGTTTTTGAATATCCACTGATTTCCAAATATTGCATATCT</gDNA_template>
            <first_frame> C  *  Y  V  L  C  L  *  R  L  L  E  L  L  V  V  *  F  *  L  E  I  T  G  L  C  L  L  K  I  L  K  L  I  L  :  L  P  H  Q  R  V  Q  E  N  V  G  G  C  I  L  R  S  L  W  M  P  A  Q  P  *  L  T  R  L  N  Q  L  I  T  S  Q  K  N  H  L  F  *  *  S  G  V  D  V  A  L  K  I  K  L  E  K  H  K  L  Q  V  L  K  Q  P  L  S  M  I  V  D  M  E  I  *  L  Q  :  W  Q  E  P  L  L  V  *  R  Y  W  Q  F  S  F  Q  K  L  L  E  K  H  S  H  S  M  L  A  R  I  R  K  Y  G  *  S  Q  A  W  K  T  Q  L  G  Q  S  W  L  H  L  S  F  H  Y  F  L  C  L  L  Y  L  Q  C  V  S  L  F  A  D  I  I  Y  E  E  N  G  H  E  L  L  V  F  A  N  F  M  G  L  V  A  V  W  L  K  L  C  Q  V  *  Y  L  R  Q  L  W  R  I  I  L  H  Q  *  H  V  L  Y  A  L  K  I  I  L  L  E  I  S  L  E  F  F  H  A  G  T  :  N  F  T  L  C  V  L  M  L  G  *  H  H  G  E  P  F  A  L  S  A  N  G  M  Q  E  L  A  L  V  I  H  Q  H  Q  N  L  H  H  C  F  L  P  V  C  D  L  Y  L  Q  C  H  L  *  G  H  H  *  H  H  Q  K  *  Y  I  *  A  Q  E  H  L  D  H  L  Q  F  L  V  L  N  L  S  L  A  L  V  T  S  I  H  F  G  L  T  S  H  H  I  L  L  *  A  G  V  H  W  T  F  K  M  H  L  L  K  D  L  V  Q  L  T  *  F  H  P  T  H  W  V  I  L  V  Y  H  L  L  I  Q  D  M  G  L  H  T  F  L  V  L  A  I  P  R  R  A  I  W  D  Q  Q  V  G  S  L  T  H  C  I  T  V  N  Q  L  Q  A  F  H  H  L  L  Q  L  T  L  F  L  D  V  S  R  D  L  I  D  H  G  K  H  *  S  N  C  *  S  P  L  Q  G  T  Q  V  G  L  F  *  P  Q  I  H  V  K  T  I  E  L  I  R  V  G  C  F  D  I  W  T  E  E  Y  N  S  *  L  H  C  S  T  L  L  G  Y  W  F  S  S  *  *  V  *  *  F  *  V  F  Y  R  V  Y  I  L  K  D  G  C  I  T  V  R  I  A  P  S  F  V  Y  C  F  F  F  S  S  Y  P  R  F  L  Y  N  S  D  V  F  S  H  V  H  L  T  D  G  *  G  L  *  F  A  C  K  Y  E  C  P  *  G  D  *  I  *  S  F  T  C  F  S  F  *  I  S  T  D  F  Q  I  L  H  I  </first_frame>
            <second_frame>  V  D  M  F  C  V  F  D  G  F  S  S  Y  W  *  C  D  F  D  W  K  *  Q  D  F  V  F  *  R  Y  *  S  *  F  C :   S  L  T  K  G  F  R  K  M  W  E  V  V  Y  C  G  A  F  G  C  L  L  N  L  D  *  Q  D  *  T  N  *  *  L  H  K  R  T  I  C  S  D  N  Q  G  W  M  *  L  *  R  *  S  *  K  S  T  S  C  R  F  *  S  S  H  Y  L  *  *  W  I  W  R  Y  N  C  N :   G  R  N  L  C  W  C  E  D  T  G  S  F  H  F  K  S  F  W  R  S  T  H  T  V  C  W  L  G  Y  G  S  M  V  N  P  K  L  G  K  L  S  L  V  N  H  G  Y  I  F  H  F  T  T  F  Y  V  C  C  T  C  N  V  F  L  C  S  P  T  S  Y  T  K  R  T  A  T  S  F  S  C  S  R  I  S  W  D  *  *  P  F  G  *  S  Y  A  K  F  D  I  Y  V  S  C  G  G  *  F  Y  I  S  D  M  C  Y  M  P  *  R  L  Y  C  W  R  *  A  *  N  S  S  M  P  A  Q :   I  S  H  Y  V  C  *  C  L  A  D  I  M  E  N  L  L  P  C  L  Q  T  G  C  K  N  *  H  W  *  S  T  S  I  R  I  Y  T  I  A  F  F  Q  S  A  I  C  I  F  S  V  I  S  E  V  I  I  S  I  I  R  S  D  T  Y  R  H  R  S  I  S  I  T  F  S  F  S  S  S  I  Y  L  *  L  S  *  P  A  F  T  L  V  L  P  V  T  T  S  C  Y  K  P  E  F  T  G  P  S  K  C  I  F  S  K  I  S  C  S  L  L  N  F  I  Q  L  I  G  L  S  L  F  I  T  S  *  F  K  I  W  V  C  I  H  S  *  S  *  Q  S  L  V  E  L  Y  G  I  N  K  S  A  A  *  P  T  A  S  Q  *  I  N  Y  K  L  F  T  I  C  F  S  *  L  S  S  W  M  *  V  V  I  *  L  I  M  A  N  I  N  Q  I  V  E  V  P  C  R  E  L  R  L  G  Y  S  D  L  K  F  T  *  R  Q  *  S  *  F  V  L  V  A  L  T  S  G  R  R  N  T  T  A  S  F  I  A  Q  H  F  W  D  I  G  L  V  V  D  R  F  D  N  F  E  F  F  T  E  C  T  F  L  K  M  G  V  L  L  Y  A  L  R  L  L  L  F  I  A  F  F  F  L  L  T  L  D  F  S  I  I  V  M  F  L  A  M  S  T  *  Q  M  V  E  A  C  S  L  H  V  N  M  N  A  L  E  V  T  K  S  S  L  L  L  V  L  V  F  E  Y  P  L  I  S  K  Y  C  I  S </second_frame>
            <third_frame>   L  I  C  F  V  S  L  T  A  S  R  A  T  G  S  V  I  L  I  G  N  N  R  T  L  S  F  E  D  I  E  A  N  F   : A  P  S  P  K  G  S  G  K  C  G  R  L  Y  I  A  E  P  L  D  A  C  S  T  L  T  N  K  I  E  P  T  N  N  F  T  K  E  P  F  V  L  I  I  R  G  G  C  S  F  E  D  K  V  R  K  A  Q  A  A  G  F  K  A  A  I  I  Y  D  S  G  Y  G  D  I  I  A   : M  A  G  T  S  A  G  V  K  I  L  A  V  F  I  S  K  A  S  G  E  A  L  T  Q  Y  A  G  S  D  T  E  V  W  L  I  P  S  L  E  N  S  A  W  S  I  M  A  T  S  F  I  S  L  L  S  M  S  A  V  L  A  M  C  F  F  V  R  R  H  H  I  R  R  E  R  P  R  A  S  R  V  R  E  F  H  G  I  S  S  R  L  V  K  A  M  P  S  L  I  F  T  S  V  V  E  D  N  S  T  S  V  T  C  A  I  C  L  E  D  Y  T  A  G  D  K  L  R  I  L  P  C  R  H   : K  F  H  T  M  C  V  D  A  W  L  T  S  W  R  T  F  C  P  V  C  K  R  D  A  R  T  S  T  G  D  P  P  A  S  E  S  T  P  L  L  S  S  S  L  R  S  V  S  S  V  S  S  L  R  S  S  L  A  S  S  E  V  I  H  I  G  T  G  A  S  R  S  P  S  V  S  R  P  Q  S  I  S  S  S  R  N  Q  H  S  L  W  S  Y  Q  S  P  H  L  A  I  S  R  S  S  L  D  L  Q  N  A  S  S  Q  R  S  R  A  A  Y  L  I  S  S  N  S  L  G  Y  P  C  L  S  P  L  N  S  R  Y  G  S  A  Y  I  P  S  P  S  N  P  S  S  S  Y  M  G  S  T  S  R  Q  P  N  P  L  H  H  S  E  S  I  T  S  F  S  P  F  A  S  A  N  S  L  P  G  C  E  S  *  F  N  *  S  W  Q  T  L  I  K  L  L  K  S  L  A  G  N  S  G  W  V  I  L  T  S  N  S  R  E  D  N  R  A  D  S  C  W  L  L  *  H  L  D  G  G  I  Q  Q  L  A  S  L  L  N  T  S  G  I  L  V  *  *  L  I  G  L  I  I  L  S  F  L  Q  S  V  H  S  *  R  W  V  Y  Y  C  T  H  C  A  F  F  C  L  L  L  F  F  F  F  L  P  S  I  S  L  *  *  *  C  F  *  P  C  P  P  D  R  W  L  R  P  V  V  C  M  *  I  *  M  P  L  R  *  L  N  L  V  F  Y  L  F  *  F  L  N  I  H  *  F  P  N  I  A  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0177K13.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99088" stop="98986"/>
                    <exon start="98449" stop="98219"/>
                    <exon start="96603" stop="96202"/>
                    <exon start="95132" stop="94567"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1299</number_coding_nucleotides>
                  <number_encoded_amino_acids>433</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LICFVSLTASRATGSVILIGNNRTLSFEDIEANFAPSPKGSGKCGRLYIAEPLDACSTLTNKIEPTNNFTKEPFVLIIRGGCSFEDKVRKAQAAGFKAAIIYDSGYGDIIAMAGTSAGVKILAVFISKASGEALTQYAGSDTEVWLIPSLENSAWSIMATSFISLLSMSAVLAMCFFVRRHHIRRERPRASRVREFHGISSRLVKAMPSLIFTSVVEDNSTSVTCAICLEDYTAGDKLRILPCRHKFHTMCVDAWLTSWRTFCPVCKRDARTSTGDPPASESTPLLSSSLRSVSSVSSLRSSLASSEVIHIGTGASRSPSVSRPQSISSSRNQHSLWSYQSPHLAISRSSLDLQNASSQRSRAAYLISSNSLGYPCLSPLNSRYGSAYIPSPSNPSSSYMGSTSRQPNPLHHSESITSFSPFASANSLPGCES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0177K13.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94462" stop="94220"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVLVALTSGRRNTTASFIAQHFWDIGLVVDRFDNFEFFTECTFLKMGVLLYALRLLLFIAFFFLLTLDFSIIVMFLAMST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="98390" e_stop="98219"/>
            <exon e_start="96603" e_stop="96202"/>
            <exon e_start="94517" e_stop="94175"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.865" acc_prob="0.000" e_score="0.983"/>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="98390" e_stop="98219" e_length="172"/>
          </exon>
          <intron i_serial="1" don_prob="0.865" acc_prob="0.000">
            <gDNA_intron_boundary i_start="98218" i_stop="96604" i_length="1615"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96603" e_stop="96202" e_length="402"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="96201" i_stop="94518" i_length="1684"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94517" e_stop="94175" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98390" stop="98219"/>
              <exon start="96603" stop="96404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98247" stop="98219"/>
              <exon start="96603" stop="96202"/>
              <exon start="94517" stop="94436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98247" stop="98219"/>
              <exon start="96603" stop="96202"/>
              <exon start="94517" stop="94436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98246" stop="98219"/>
              <exon start="96603" stop="96202"/>
              <exon start="94517" stop="94194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98246" stop="98219"/>
              <exon start="96603" stop="96202"/>
              <exon start="94517" stop="94462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98244" stop="98219"/>
              <exon start="96603" stop="96202"/>
              <exon start="94517" stop="94175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96503" stop="96263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233613" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCTGCTCAACCTTGACTAACAAGATTGAACCAACTAATAACTTCACAAAAGAACCATTTGTTCTGATAATCAGGGGTGGATGTAGCTTTGAAGATAAAGTTAGAAAAGCACAAGCTGCAGGTTTTAAAGCAGCCATTATCTATGATAGTGGATATGGAGATATAATTGCAA : TGGCAGGAACCTCTGCTGGTGTGAAGATACTGGCAGTTTTCATTTCAAAAGCTTCTGGAGAAGCACTCACACAGTATGCTGGCTCGGATACGGAAGTATGGTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACA : GGAACTCAGGTTGGGTTATTCTGACCTCAAATTCACGTGAAGACAATAGAGCTGATTCGTGTTGGTTGCTTTGACATCTGGACGGAGGAATACAACAGCTAGCTTCATTGCTCAACACTTCTGGGATATTGGTTTAGTAGTTGATAGGTTTGATAATTTTGAGTTTTTTACAGAGTGTACATTCTTAAAGATGGGTGTATTACTGTACGCATTGCGCCTTCTTTTGTTTATTGCTTTTTTTTTTCTTCTTACCCTCGATTTCTCTATAATAGTGATGTTTTTAGCCATGTCCACCTGACAGATGGTTGAGGCCTGTAGTTTGCATGTAAATATGAATGCCCTT</gDNA_template>
            <first_frame> A  C  S  T  L  T  N  K  I  E  P  T  N  N  F  T  K  E  P  F  V  L  I  I  R  G  G  C  S  F  E  D  K  V  R  K  A  Q  A  A  G  F  K  A  A  I  I  Y  D  S  G  Y  G  D  I  I  A   : M  A  G  T  S  A  G  V  K  I  L  A  V  F  I  S  K  A  S  G  E  A  L  T  Q  Y  A  G  S  D  T  E  V  W  L  I  P  S  L  E  N  S  A  W  S  I  M  A  T  S  F  I  S  L  L  S  M  S  A  V  L  A  M  C  F  F  V  R  R  H  H  I  R  R  E  R  P  R  A  S  R  V  R  E  F  H  G  I  S  S  R  L  V  K  A  M  P  S  L  I  F  T  S  V  V  E  D  N  S  T  S  V  T  C  A  I  C  L  E  D  Y  T  A  G  D  K  L  R  I  L  P  C  R  H   : R  N  S  G  W  V  I  L  T  S  N  S  R  E  D  N  R  A  D  S  C  W  L  L  *  H  L  D  G  G  I  Q  Q  L  A  S  L  L  N  T  S  G  I  L  V  *  *  L  I  G  L  I  I  L  S  F  L  Q  S  V  H  S  *  R  W  V  Y  Y  C  T  H  C  A  F  F  C  L  L  L  F  F  F  F  L  P  S  I  S  L  *  *  *  C  F  *  P  C  P  P  D  R  W  L  R  P  V  V  C  M  *  I  *  M  P   </first_frame>
            <second_frame>  P  A  Q  P  *  L  T  R  L  N  Q  L  I  T  S  Q  K  N  H  L  F  *  *  S  G  V  D  V  A  L  K  I  K  L  E  K  H  K  L  Q  V  L  K  Q  P  L  S  M  I  V  D  M  E  I  *  L  Q  :  W  Q  E  P  L  L  V  *  R  Y  W  Q  F  S  F  Q  K  L  L  E  K  H  S  H  S  M  L  A  R  I  R  K  Y  G  *  S  Q  A  W  K  T  Q  L  G  Q  S  W  L  H  L  S  F  H  Y  F  L  C  L  L  Y  L  Q  C  V  S  L  F  A  D  I  I  Y  E  E  N  G  H  E  L  L  V  F  A  N  F  M  G  L  V  A  V  W  L  K  L  C  Q  V  *  Y  L  R  Q  L  W  R  I  I  L  H  Q  *  H  V  L  Y  A  L  K  I  I  L  L  E  I  S  L  E  F  F  H  A  G  T  :  G  T  Q  V  G  L  F  *  P  Q  I  H  V  K  T  I  E  L  I  R  V  G  C  F  D  I  W  T  E  E  Y  N  S  *  L  H  C  S  T  L  L  G  Y  W  F  S  S  *  *  V  *  *  F  *  V  F  Y  R  V  Y  I  L  K  D  G  C  I  T  V  R  I  A  P  S  F  V  Y  C  F  F  F  S  S  Y  P  R  F  L  Y  N  S  D  V  F  S  H  V  H  L  T  D  G  *  G  L  *  F  A  C  K  Y  E  C  P  </second_frame>
            <third_frame>   L  L  N  L  D  *  Q  D  *  T  N  *  *  L  H  K  R  T  I  C  S  D  N  Q  G  W  M  *  L  *  R  *  S  *  K  S  T  S  C  R  F  *  S  S  H  Y  L  *  *  W  I  W  R  Y  N  C  N :   G  R  N  L  C  W  C  E  D  T  G  S  F  H  F  K  S  F  W  R  S  T  H  T  V  C  W  L  G  Y  G  S  M  V  N  P  K  L  G  K  L  S  L  V  N  H  G  Y  I  F  H  F  T  T  F  Y  V  C  C  T  C  N  V  F  L  C  S  P  T  S  Y  T  K  R  T  A  T  S  F  S  C  S  R  I  S  W  D  *  *  P  F  G  *  S  Y  A  K  F  D  I  Y  V  S  C  G  G  *  F  Y  I  S  D  M  C  Y  M  P  *  R  L  Y  C  W  R  *  A  *  N  S  S  M  P  A  Q :   E  L  R  L  G  Y  S  D  L  K  F  T  *  R  Q  *  S  *  F  V  L  V  A  L  T  S  G  R  R  N  T  T  A  S  F  I  A  Q  H  F  W  D  I  G  L  V  V  D  R  F  D  N  F  E  F  F  T  E  C  T  F  L  K  M  G  V  L  L  Y  A  L  R  L  L  L  F  I  A  F  F  F  L  L  T  L  D  F  S  I  I  V  M  F  L  A  M  S  T  *  Q  M  V  E  A  C  S  L  H  V  N  M  N  A  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0177K13.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98390" stop="98219"/>
                    <exon start="96603" stop="96202"/>
                    <exon start="94517" stop="94444"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>645</number_coding_nucleotides>
                  <number_encoded_amino_acids>215</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ACSTLTNKIEPTNNFTKEPFVLIIRGGCSFEDKVRKAQAAGFKAAIIYDSGYGDIIAMAGTSAGVKILAVFISKASGEALTQYAGSDTEVWLIPSLENSAWSIMATSFISLLSMSAVLAMCFFVRRHHIRRERPRASRVREFHGISSRLVKAMPSLIFTSVVEDNSTSVTCAICLEDYTAGDKLRILPCRHRNSGWVILTSNSREDNRADSCWLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0177K13.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94462" stop="94220"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVLVALTSGRRNTTASFIAQHFWDIGLVVDRFDNFEFFTECTFLKMGVLLYALRLLLFIAFFFLLTLDFSIIVMFLAMST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 202 chains have been computed
$ 
$ memory statistics:
$ 268008 bytes spliced alignments in total
$ 129 spliced alignments have been stored
$ 2077 bytes was the average size of a spliced alignment
$ 23960 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1711 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 227 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 11:57:26
-->
