<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 17:23:10"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712099" ref_strand="+" ref_description="SGN-E712099 [FB03DE12]">
      <seq>cgtctcaacctagagagagagtgagagagtgtaagagagaggttcaaagatggtgcagagactcacttaccgtaagcgccacagctatgccaccaaatccaaccaacaccgcgtcgtcaaaactcctggtgggaagttgatttatcagactaccaagaagagggctaatggtcccaagtgccctgtcactggaaagaggattcaggggattcctcacctgagaccagctgagtacaagaggtccaggttgtctaggaacaggaggactgtgaaccgtgcctatggcggagtattgtctggaggagcagttagggagaggatcgtccgtgctttcttggtggaagagcaaaaaattgttaagaaggttttgaagatccaaaaagccaaagaaaagttggcagctaagagttaagcagagagtttagaggaactttctttttatgttttgctgaaattttgacattcaagtgtttactagttttgtgctacaaattgaccttattgctacaacaatttacggcagttttttgctttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3280" stop="5599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3579" g_stop="3706" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3707" i_stop="3874" i_length="168">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3875" g_stop="3954" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="208" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3955" i_stop="4868" i_length="914">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4869" g_stop="4978" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="318" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4979" i_stop="5082" i_length="104">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5083" g_stop="5298" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="534" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="535" polyA_stop="551"/>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E712099" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3579" e_stop="3706"/>
          <exon e_start="3875" e_stop="3954"/>
          <exon e_start="4869" e_stop="4978"/>
          <exon e_start="5083" e_stop="5298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTCAACCTAGAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTGGTACAAACATATCTTTTCTGTAGTTTGATTTGTGCTTATTCATTCAATTTGAAGTATAAATTAGTATTGCTATGATAAAGACTGAATAGATCAGAATGAGTGTAGACGATCGTAGCTTGTTGGGGATTGAGTAGTGGTTGATTTAACGGTTGATTGATTGGAATACAGGTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGGGTAATTTCATCTCTCTTTGTTTGCATTTCGTGATTCAATTGCATGAGCTTAATATTGTTTAATTTGATCGAAACTTTTTTTATTTTTTCTGTTGCAAGTGATGTTCTTTGTATTAAGTTTTTGACATACTCAGTAGTACAATTGTATCTACTGCATTTTGTTCACATGATTATGTATTCTCAGCAGCGACCCCTAGATCACTAAATGGACCCTCATTTTACACTTTACCCAAAGTAGTGTTGTTTCTGTTGTATCACATATTTAATTGGGTTTTGTTGTCTGAAATCTTATTTGTGGATGTATCAAATGCCTTTGCAAGAATAGATTTTGGTTGTTAAGTATATTCGATATGTTATTTTTCATTTTTAAGAATAGTTGTTTGATTTCTTTGACCAATTTCCAACTTAGATTGAAGCTAAAACATTTCTTCTGTTGTAGTATGAGCATGAAAGTTCAGTCTAGGTGTGATATTTCATTTTTTATTTTGTCCACTATTAAGATATTGTAGGTTTGGTTGCTCAATTCCATCCTTGTTATGCCCCTAATTAGGGTAGCTTGTAGCTCCTTCAAATTTTTCCATCAGATTTTATGGTGTCAATGTGTATTTCTAATTTGTCTAAGGAATGACAAATTTACTTTGTTAATCATAAATAAGATTGCAATTCTTTCGGTAGAATTAGAGGCAGAGTGCTAGATCCATCAGCAGGGTCTTAATATTCAAAATTTGTCACTTGCTGGCTTCTTTCTTGAATACTTGTACGTGATGTTGGGTATTGCCTTAATTACTTTTTAGGACTGCTGATGGTCTAGTACCCGTTCTCCTTGTTCTTGGTGTTTAAAAATCTTATGTTATGGTAGTTAATTATCTAAGCATTTGGGGCTATTTCTAATCTTCAAGCTTTGCTGTCTTGCAGATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTT</genome_strand>
        <mrna_strand>CGTCTCAACCTAGAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTG........................................................................................................................................................................GTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAG........................................................................................................GATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716452" ref_strand="+" ref_description="SGN-E716452 [FB17AD05]">
      <seq>gcctcaacctagagagagagtgagagagtgtaagagagaggttcaaagatggtgcagagactcagcttaccgtaagcgccacagctatgccaccaaatccaaccaacaccgcgtcgtcaaaactcctggtgggaagttgatttatcagactaccaagaagagggctaatggtcccaagtgccctgtcactggaaagaggattcaggggattcctcacctgagaccagctgagtacaagaggtccaggttgtctaggaacaggaggactgtgaaccgtgcctatggcggagtattgtctggaggagcagttagggagaggatcgtccgtgctttcttggtggaagagcaaaaaattgttaagaaggttttgaagatccaaaaagccaaagaaaagttggcagctaagagttaagcagagagtttagaggaactttctttttatgttttgctgaaattttgacattcaagtgtttactagttttgtgctacaaattgaccttattgctacaacaatttacggcagttttttgcttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3280" stop="5599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3580" g_stop="3706" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3707" i_stop="3874" i_length="168">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3875" g_stop="3954" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="208" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3955" i_stop="4868" i_length="914">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4869" g_stop="4978" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="318" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4979" i_stop="5082" i_length="104">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5083" g_stop="5298" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="534" r_length="216" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="535" polyA_stop="552"/>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E716452" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3580" e_stop="3706"/>
          <exon e_start="3875" e_stop="3954"/>
          <exon e_start="4869" e_stop="4978"/>
          <exon e_start="5083" e_stop="5298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCAACCTAGAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCA-CTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTGGTACAAACATATCTTTTCTGTAGTTTGATTTGTGCTTATTCATTCAATTTGAAGTATAAATTAGTATTGCTATGATAAAGACTGAATAGATCAGAATGAGTGTAGACGATCGTAGCTTGTTGGGGATTGAGTAGTGGTTGATTTAACGGTTGATTGATTGGAATACAGGTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGGGTAATTTCATCTCTCTTTGTTTGCATTTCGTGATTCAATTGCATGAGCTTAATATTGTTTAATTTGATCGAAACTTTTTTTATTTTTTCTGTTGCAAGTGATGTTCTTTGTATTAAGTTTTTGACATACTCAGTAGTACAATTGTATCTACTGCATTTTGTTCACATGATTATGTATTCTCAGCAGCGACCCCTAGATCACTAAATGGACCCTCATTTTACACTTTACCCAAAGTAGTGTTGTTTCTGTTGTATCACATATTTAATTGGGTTTTGTTGTCTGAAATCTTATTTGTGGATGTATCAAATGCCTTTGCAAGAATAGATTTTGGTTGTTAAGTATATTCGATATGTTATTTTTCATTTTTAAGAATAGTTGTTTGATTTCTTTGACCAATTTCCAACTTAGATTGAAGCTAAAACATTTCTTCTGTTGTAGTATGAGCATGAAAGTTCAGTCTAGGTGTGATATTTCATTTTTTATTTTGTCCACTATTAAGATATTGTAGGTTTGGTTGCTCAATTCCATCCTTGTTATGCCCCTAATTAGGGTAGCTTGTAGCTCCTTCAAATTTTTCCATCAGATTTTATGGTGTCAATGTGTATTTCTAATTTGTCTAAGGAATGACAAATTTACTTTGTTAATCATAAATAAGATTGCAATTCTTTCGGTAGAATTAGAGGCAGAGTGCTAGATCCATCAGCAGGGTCTTAATATTCAAAATTTGTCACTTGCTGGCTTCTTTCTTGAATACTTGTACGTGATGTTGGGTATTGCCTTAATTACTTTTTAGGACTGCTGATGGTCTAGTACCCGTTCTCCTTGTTCTTGGTGTTTAAAAATCTTATGTTATGGTAGTTAATTATCTAAGCATTTGGGGCTATTTCTAATCTTCAAGCTTTGCTGTCTTGCAGATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTT</genome_strand>
        <mrna_strand>GCCTCAACCTAGAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCAGCTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTG........................................................................................................................................................................GTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAG........................................................................................................GATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346788" ref_strand="+" ref_description="SGN-E346788 [cTOF-32-E10]">
      <seq>cctcaacctagagagagagtgagagagtgtaagagagaggttcaaagatggtgcagagactcacttaccgtaagcgccacagctatgccaccaaatccaaccaacaccgcgtcgtcaaaactcctggtgggaagttgatttatcagactaccaagaagagggctaatggtcccaagtgccctgtcactggaaagaggattcaggggattcctcacctgagaccagctgagtacaagaggtccaggttgtctaggaacaggaggactgtgaaccgtgcctatggcggagtattgtctggaggagcagttagggagaggatcgtccgtgctttcttggtggaagagcaaaaaaattgttaagaaggttttgaagatccaaaaagccaaagaaaagttggcagctaagagttaagcagagagtttagaggaactttctttttatgttttgctgaaattttgacattcaagtgtttactagttttgtgctacaaattgaccttattgctacaacaatttacggcagttttttgcttttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3281" stop="5598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3581" g_stop="3706" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3707" i_stop="3874" i_length="168">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3875" g_stop="3954" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="206" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3955" i_stop="4868" i_length="914">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4869" g_stop="4978" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="316" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4979" i_stop="5082" i_length="104">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5083" g_stop="5305" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="539" r_length="223" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E346788" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3581" e_stop="3706"/>
          <exon e_start="3875" e_stop="3954"/>
          <exon e_start="4869" e_stop="4978"/>
          <exon e_start="5083" e_stop="5305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAACCTAGAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTGGTACAAACATATCTTTTCTGTAGTTTGATTTGTGCTTATTCATTCAATTTGAAGTATAAATTAGTATTGCTATGATAAAGACTGAATAGATCAGAATGAGTGTAGACGATCGTAGCTTGTTGGGGATTGAGTAGTGGTTGATTTAACGGTTGATTGATTGGAATACAGGTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGGGTAATTTCATCTCTCTTTGTTTGCATTTCGTGATTCAATTGCATGAGCTTAATATTGTTTAATTTGATCGAAACTTTTTTTATTTTTTCTGTTGCAAGTGATGTTCTTTGTATTAAGTTTTTGACATACTCAGTAGTACAATTGTATCTACTGCATTTTGTTCACATGATTATGTATTCTCAGCAGCGACCCCTAGATCACTAAATGGACCCTCATTTTACACTTTACCCAAAGTAGTGTTGTTTCTGTTGTATCACATATTTAATTGGGTTTTGTTGTCTGAAATCTTATTTGTGGATGTATCAAATGCCTTTGCAAGAATAGATTTTGGTTGTTAAGTATATTCGATATGTTATTTTTCATTTTTAAGAATAGTTGTTTGATTTCTTTGACCAATTTCCAACTTAGATTGAAGCTAAAACATTTCTTCTGTTGTAGTATGAGCATGAAAGTTCAGTCTAGGTGTGATATTTCATTTTTTATTTTGTCCACTATTAAGATATTGTAGGTTTGGTTGCTCAATTCCATCCTTGTTATGCCCCTAATTAGGGTAGCTTGTAGCTCCTTCAAATTTTTCCATCAGATTTTATGGTGTCAATGTGTATTTCTAATTTGTCTAAGGAATGACAAATTTACTTTGTTAATCATAAATAAGATTGCAATTCTTTCGGTAGAATTAGAGGCAGAGTGCTAGATCCATCAGCAGGGTCTTAATATTCAAAATTTGTCACTTGCTGGCTTCTTTCTTGAATACTTGTACGTGATGTTGGGTATTGCCTTAATTACTTTTTAGGACTGCTGATGGTCTAGTACCCGTTCTCCTTGTTCTTGGTGTTTAAAAATCTTATGTTATGGTAGTTAATTATCTAAGCATTTGGGGCTATTTCTAATCTTCAAGCTTTGCTGTCTTGCAGATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGC-AAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTTATTTTGA</genome_strand>
        <mrna_strand>CCTCAACCTAGAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTG........................................................................................................................................................................GTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAG........................................................................................................GATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTT-TAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345977" ref_strand="+" ref_description="SGN-E345977 [cTOF-24-C23]">
      <seq>gctcaacctagagatagagtgagagagtgtaagagagaggttcaaagatggtgcagagactcacttaccgtaagcgccacagctatgccaccaaatccaaccaacaccgcgtcgtcaaaactcctggtgggaagttgatttatcagactaccaagaagagggctaatggtcccaagtgccctgtcactggaaagaggattcaggggattcctcacctgagaccagctgagtacaagaggtccaggttgtctaggaacaggaggactgtgaaccgtgcctatggcggagtattgtctggaggagcagttagggagaggatcgtccgtgctttcttggtggaagagcaaaaaattgttaagaaggttttgaagatccaaaaagccaaagaaaagttggcagctaagagttaagcagagagtttagaggaactttctttttatgttttgctgaaattttgacattcaagtgtttacctagttttgtgctacaaattgaccttattgctacaacaatttaccggcagttttttgctttanaaaaaaaaaaannnnaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3282" stop="5599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3581" g_stop="3706" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3707" i_stop="3874" i_length="168">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3875" g_stop="3954" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="206" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3955" i_stop="4868" i_length="914">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4869" g_stop="4978" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="316" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4979" i_stop="5082" i_length="104">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5083" g_stop="5298" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="534" r_length="218" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="535" polyA_stop="547"/>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E345977" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3581" e_stop="3706"/>
          <exon e_start="3875" e_stop="3954"/>
          <exon e_start="4869" e_stop="4978"/>
          <exon e_start="5083" e_stop="5298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAACCTAGAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTGGTACAAACATATCTTTTCTGTAGTTTGATTTGTGCTTATTCATTCAATTTGAAGTATAAATTAGTATTGCTATGATAAAGACTGAATAGATCAGAATGAGTGTAGACGATCGTAGCTTGTTGGGGATTGAGTAGTGGTTGATTTAACGGTTGATTGATTGGAATACAGGTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGGGTAATTTCATCTCTCTTTGTTTGCATTTCGTGATTCAATTGCATGAGCTTAATATTGTTTAATTTGATCGAAACTTTTTTTATTTTTTCTGTTGCAAGTGATGTTCTTTGTATTAAGTTTTTGACATACTCAGTAGTACAATTGTATCTACTGCATTTTGTTCACATGATTATGTATTCTCAGCAGCGACCCCTAGATCACTAAATGGACCCTCATTTTACACTTTACCCAAAGTAGTGTTGTTTCTGTTGTATCACATATTTAATTGGGTTTTGTTGTCTGAAATCTTATTTGTGGATGTATCAAATGCCTTTGCAAGAATAGATTTTGGTTGTTAAGTATATTCGATATGTTATTTTTCATTTTTAAGAATAGTTGTTTGATTTCTTTGACCAATTTCCAACTTAGATTGAAGCTAAAACATTTCTTCTGTTGTAGTATGAGCATGAAAGTTCAGTCTAGGTGTGATATTTCATTTTTTATTTTGTCCACTATTAAGATATTGTAGGTTTGGTTGCTCAATTCCATCCTTGTTATGCCCCTAATTAGGGTAGCTTGTAGCTCCTTCAAATTTTTCCATCAGATTTTATGGTGTCAATGTGTATTTCTAATTTGTCTAAGGAATGACAAATTTACTTTGTTAATCATAAATAAGATTGCAATTCTTTCGGTAGAATTAGAGGCAGAGTGCTAGATCCATCAGCAGGGTCTTAATATTCAAAATTTGTCACTTGCTGGCTTCTTTCTTGAATACTTGTACGTGATGTTGGGTATTGCCTTAATTACTTTTTAGGACTGCTGATGGTCTAGTACCCGTTCTCCTTGTTCTTGGTGTTTAAAAATCTTATGTTATGGTAGTTAATTATCTAAGCATTTGGGGCTATTTCTAATCTTCAAGCTTTGCTGTCTTGCAGATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTA-CTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTA-CGGCAGTTTTTTGCTTT</genome_strand>
        <mrna_strand>GCTCAACCTAGAGATAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTG........................................................................................................................................................................GTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAG........................................................................................................GATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACCTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACCGGCAGTTTTTTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339994" ref_strand="+" ref_description="SGN-E339994 [cTOF-3-K17]">
      <seq>cctcaacctagagagagagtgagagagtgtaagagagaggttcaaagatggtgcagagactcacttaccgtaagcgccacagctatgccaccaaatccaaccaacaccgcgtcgtcaaaactcctggtgggaagttgatttatcagactaccaagaagagggctaatggtcccaagtgccctgtcactggaaagaggattcaggggattcctcacctgagaccagctgagtacaagaggtccaggttgtctaggaacaggaggactgtgaaccgtgcctatggcggagtattgtctggaggagcagttagggagaggatcgtccgtgctttcttggtggaagagcaaaaaattgttaagaaggttttgaagatccaaaaagccaaagaaaagttggcagctaagagttaagcagagagtttagaggaactttctttttatgttttgctgaaattttgacattcaagtgtttactagttttgtgctacaaattgaccttattgctacaacaatttacggcagttttttgcttaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3281" stop="5599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3581" g_stop="3706" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3707" i_stop="3874" i_length="168">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3875" g_stop="3954" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="206" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3955" i_stop="4868" i_length="914">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4869" g_stop="4978" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="316" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4979" i_stop="5082" i_length="104">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5083" g_stop="5298" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="532" r_length="216" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="533" polyA_stop="564"/>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E339994" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3581" e_stop="3706"/>
          <exon e_start="3875" e_stop="3954"/>
          <exon e_start="4869" e_stop="4978"/>
          <exon e_start="5083" e_stop="5298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAACCTAGAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTGGTACAAACATATCTTTTCTGTAGTTTGATTTGTGCTTATTCATTCAATTTGAAGTATAAATTAGTATTGCTATGATAAAGACTGAATAGATCAGAATGAGTGTAGACGATCGTAGCTTGTTGGGGATTGAGTAGTGGTTGATTTAACGGTTGATTGATTGGAATACAGGTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGGGTAATTTCATCTCTCTTTGTTTGCATTTCGTGATTCAATTGCATGAGCTTAATATTGTTTAATTTGATCGAAACTTTTTTTATTTTTTCTGTTGCAAGTGATGTTCTTTGTATTAAGTTTTTGACATACTCAGTAGTACAATTGTATCTACTGCATTTTGTTCACATGATTATGTATTCTCAGCAGCGACCCCTAGATCACTAAATGGACCCTCATTTTACACTTTACCCAAAGTAGTGTTGTTTCTGTTGTATCACATATTTAATTGGGTTTTGTTGTCTGAAATCTTATTTGTGGATGTATCAAATGCCTTTGCAAGAATAGATTTTGGTTGTTAAGTATATTCGATATGTTATTTTTCATTTTTAAGAATAGTTGTTTGATTTCTTTGACCAATTTCCAACTTAGATTGAAGCTAAAACATTTCTTCTGTTGTAGTATGAGCATGAAAGTTCAGTCTAGGTGTGATATTTCATTTTTTATTTTGTCCACTATTAAGATATTGTAGGTTTGGTTGCTCAATTCCATCCTTGTTATGCCCCTAATTAGGGTAGCTTGTAGCTCCTTCAAATTTTTCCATCAGATTTTATGGTGTCAATGTGTATTTCTAATTTGTCTAAGGAATGACAAATTTACTTTGTTAATCATAAATAAGATTGCAATTCTTTCGGTAGAATTAGAGGCAGAGTGCTAGATCCATCAGCAGGGTCTTAATATTCAAAATTTGTCACTTGCTGGCTTCTTTCTTGAATACTTGTACGTGATGTTGGGTATTGCCTTAATTACTTTTTAGGACTGCTGATGGTCTAGTACCCGTTCTCCTTGTTCTTGGTGTTTAAAAATCTTATGTTATGGTAGTTAATTATCTAAGCATTTGGGGCTATTTCTAATCTTCAAGCTTTGCTGTCTTGCAGATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTT</genome_strand>
        <mrna_strand>CCTCAACCTAGAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTG........................................................................................................................................................................GTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAG........................................................................................................GATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713649" ref_strand="+" ref_description="SGN-E713649 [FB09AH08]">
      <seq>cctcaacctagagagagagtgagagagtgtaagagagaggttcaaagatggtgcagagactcacttaccgtaagcgccacagctatgccaccaaatccaaccaacaccgcgtcgtcaaaactcctggtgggaagttgatttatcagactaccaagaagagggctaatggtcccaagtgccctgtcactggaaagaggattcaggggattcctcacctgagaccagctgagtacaagaggtccaggttgtctaggaacaggaggactgtgaaccgtgcctatggcggagtattgtctggaggagcagttagggagaggatcgtccgtgctttcttggtggaagagcaaaaaattgttaagaaggttttgaagatccaaaaagccaaagaaaagttggcagctaagagttaagcagagagtttagaggaactttctttttatgttttgctgaaattttgacattcaagtgtttactagttttgtgctacaaattgaccttattgctacaacaatttacggcagttttttgctttanaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3281" stop="5599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3581" g_stop="3706" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3707" i_stop="3874" i_length="168">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3875" g_stop="3954" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="206" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3955" i_stop="4868" i_length="914">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4869" g_stop="4978" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="316" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4979" i_stop="5082" i_length="104">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5083" g_stop="5298" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="532" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="533" polyA_stop="562"/>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E713649" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3581" e_stop="3706"/>
          <exon e_start="3875" e_stop="3954"/>
          <exon e_start="4869" e_stop="4978"/>
          <exon e_start="5083" e_stop="5298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAACCTAGAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTGGTACAAACATATCTTTTCTGTAGTTTGATTTGTGCTTATTCATTCAATTTGAAGTATAAATTAGTATTGCTATGATAAAGACTGAATAGATCAGAATGAGTGTAGACGATCGTAGCTTGTTGGGGATTGAGTAGTGGTTGATTTAACGGTTGATTGATTGGAATACAGGTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGGGTAATTTCATCTCTCTTTGTTTGCATTTCGTGATTCAATTGCATGAGCTTAATATTGTTTAATTTGATCGAAACTTTTTTTATTTTTTCTGTTGCAAGTGATGTTCTTTGTATTAAGTTTTTGACATACTCAGTAGTACAATTGTATCTACTGCATTTTGTTCACATGATTATGTATTCTCAGCAGCGACCCCTAGATCACTAAATGGACCCTCATTTTACACTTTACCCAAAGTAGTGTTGTTTCTGTTGTATCACATATTTAATTGGGTTTTGTTGTCTGAAATCTTATTTGTGGATGTATCAAATGCCTTTGCAAGAATAGATTTTGGTTGTTAAGTATATTCGATATGTTATTTTTCATTTTTAAGAATAGTTGTTTGATTTCTTTGACCAATTTCCAACTTAGATTGAAGCTAAAACATTTCTTCTGTTGTAGTATGAGCATGAAAGTTCAGTCTAGGTGTGATATTTCATTTTTTATTTTGTCCACTATTAAGATATTGTAGGTTTGGTTGCTCAATTCCATCCTTGTTATGCCCCTAATTAGGGTAGCTTGTAGCTCCTTCAAATTTTTCCATCAGATTTTATGGTGTCAATGTGTATTTCTAATTTGTCTAAGGAATGACAAATTTACTTTGTTAATCATAAATAAGATTGCAATTCTTTCGGTAGAATTAGAGGCAGAGTGCTAGATCCATCAGCAGGGTCTTAATATTCAAAATTTGTCACTTGCTGGCTTCTTTCTTGAATACTTGTACGTGATGTTGGGTATTGCCTTAATTACTTTTTAGGACTGCTGATGGTCTAGTACCCGTTCTCCTTGTTCTTGGTGTTTAAAAATCTTATGTTATGGTAGTTAATTATCTAAGCATTTGGGGCTATTTCTAATCTTCAAGCTTTGCTGTCTTGCAGATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTT</genome_strand>
        <mrna_strand>CCTCAACCTAGAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTG........................................................................................................................................................................GTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAG........................................................................................................GATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732165" ref_strand="+" ref_description="SGN-E732165 [LB01BG10]">
      <seq>cctcaacctagagagagagtgagagagtgtaagagagaggttcaaagatggtgcagagactcacttaccgtaagcgccacagctatgccaccaaatccaaccaacaccgcgtcgtcaaaactcctggtgggaagttgatttatcagactaccaagaagagggctaatggtcccaagtgccctgtcactggaaagaggattcaggggattcctcacctgagaccagctgagtacaagaggtccaggttgtctaggaacaggaggactgtgaaccgtgcctatggcggagtattgtctggaggagcagttagggagaggatcgtccgtgctttcttggtggaagagcaaaaaattgttaagaaggttttgaagatccaaaaagccaaagaaaagttggcagctaagagttaagcagagagtttagaggaactttctttttatgttttgctgaaattttgacattcaagtgtttactagttttgtgctacaaattgaccttattgctacaacaatttacggcagttttttgctttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3281" stop="5599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3581" g_stop="3706" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3707" i_stop="3874" i_length="168">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3875" g_stop="3954" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="206" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3955" i_stop="4868" i_length="914">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4869" g_stop="4978" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="316" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4979" i_stop="5082" i_length="104">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5083" g_stop="5298" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="532" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="533" polyA_stop="545"/>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E732165" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3581" e_stop="3706"/>
          <exon e_start="3875" e_stop="3954"/>
          <exon e_start="4869" e_stop="4978"/>
          <exon e_start="5083" e_stop="5298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAACCTAGAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTGGTACAAACATATCTTTTCTGTAGTTTGATTTGTGCTTATTCATTCAATTTGAAGTATAAATTAGTATTGCTATGATAAAGACTGAATAGATCAGAATGAGTGTAGACGATCGTAGCTTGTTGGGGATTGAGTAGTGGTTGATTTAACGGTTGATTGATTGGAATACAGGTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGGGTAATTTCATCTCTCTTTGTTTGCATTTCGTGATTCAATTGCATGAGCTTAATATTGTTTAATTTGATCGAAACTTTTTTTATTTTTTCTGTTGCAAGTGATGTTCTTTGTATTAAGTTTTTGACATACTCAGTAGTACAATTGTATCTACTGCATTTTGTTCACATGATTATGTATTCTCAGCAGCGACCCCTAGATCACTAAATGGACCCTCATTTTACACTTTACCCAAAGTAGTGTTGTTTCTGTTGTATCACATATTTAATTGGGTTTTGTTGTCTGAAATCTTATTTGTGGATGTATCAAATGCCTTTGCAAGAATAGATTTTGGTTGTTAAGTATATTCGATATGTTATTTTTCATTTTTAAGAATAGTTGTTTGATTTCTTTGACCAATTTCCAACTTAGATTGAAGCTAAAACATTTCTTCTGTTGTAGTATGAGCATGAAAGTTCAGTCTAGGTGTGATATTTCATTTTTTATTTTGTCCACTATTAAGATATTGTAGGTTTGGTTGCTCAATTCCATCCTTGTTATGCCCCTAATTAGGGTAGCTTGTAGCTCCTTCAAATTTTTCCATCAGATTTTATGGTGTCAATGTGTATTTCTAATTTGTCTAAGGAATGACAAATTTACTTTGTTAATCATAAATAAGATTGCAATTCTTTCGGTAGAATTAGAGGCAGAGTGCTAGATCCATCAGCAGGGTCTTAATATTCAAAATTTGTCACTTGCTGGCTTCTTTCTTGAATACTTGTACGTGATGTTGGGTATTGCCTTAATTACTTTTTAGGACTGCTGATGGTCTAGTACCCGTTCTCCTTGTTCTTGGTGTTTAAAAATCTTATGTTATGGTAGTTAATTATCTAAGCATTTGGGGCTATTTCTAATCTTCAAGCTTTGCTGTCTTGCAGATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTT</genome_strand>
        <mrna_strand>CCTCAACCTAGAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTG........................................................................................................................................................................GTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAG........................................................................................................GATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310600" ref_strand="+" ref_description="SGN-E310600 [cLEZ-19-P12]">
      <seq>cctcaacctagagagagagtgagagagtgtaagagagaggttcaaagatggtgcagagactcacttaccgtaagcgccacagctatgccaccaaatccaaccaacaccgcgtcgtcaaaactcctggtgggaagttgatttatcagactaccaagaagagggctaatggtcccaagtgccctgtcactggaaagaggattcaggggattcctcacctgagaccagctgagtacaagaggtccaggttgtctaggaacaggaggactgtgaaccgtgcctatggcggagtattgtctggaggagcagttagggagaggatcgtccgtgctttcttggtggaagagcaaaaaattgttaagaaggttttgaagatccaaaaagccaaagaaaagttggcagctaagagttaagcagagagtttagaggaactttctttttatgttttgctgaaattttgacattcaagtgtttactagttttgtgctacaaattgaccttattgctacaacaatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3281" stop="5582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3581" g_stop="3706" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3707" i_stop="3874" i_length="168">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3875" g_stop="3954" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="206" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3955" i_stop="4868" i_length="914">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4869" g_stop="4978" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="316" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4979" i_stop="5082" i_length="104">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5083" g_stop="5282" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="516" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E310600" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3581" e_stop="3706"/>
          <exon e_start="3875" e_stop="3954"/>
          <exon e_start="4869" e_stop="4978"/>
          <exon e_start="5083" e_stop="5282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAACCTAGAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTGGTACAAACATATCTTTTCTGTAGTTTGATTTGTGCTTATTCATTCAATTTGAAGTATAAATTAGTATTGCTATGATAAAGACTGAATAGATCAGAATGAGTGTAGACGATCGTAGCTTGTTGGGGATTGAGTAGTGGTTGATTTAACGGTTGATTGATTGGAATACAGGTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGGGTAATTTCATCTCTCTTTGTTTGCATTTCGTGATTCAATTGCATGAGCTTAATATTGTTTAATTTGATCGAAACTTTTTTTATTTTTTCTGTTGCAAGTGATGTTCTTTGTATTAAGTTTTTGACATACTCAGTAGTACAATTGTATCTACTGCATTTTGTTCACATGATTATGTATTCTCAGCAGCGACCCCTAGATCACTAAATGGACCCTCATTTTACACTTTACCCAAAGTAGTGTTGTTTCTGTTGTATCACATATTTAATTGGGTTTTGTTGTCTGAAATCTTATTTGTGGATGTATCAAATGCCTTTGCAAGAATAGATTTTGGTTGTTAAGTATATTCGATATGTTATTTTTCATTTTTAAGAATAGTTGTTTGATTTCTTTGACCAATTTCCAACTTAGATTGAAGCTAAAACATTTCTTCTGTTGTAGTATGAGCATGAAAGTTCAGTCTAGGTGTGATATTTCATTTTTTATTTTGTCCACTATTAAGATATTGTAGGTTTGGTTGCTCAATTCCATCCTTGTTATGCCCCTAATTAGGGTAGCTTGTAGCTCCTTCAAATTTTTCCATCAGATTTTATGGTGTCAATGTGTATTTCTAATTTGTCTAAGGAATGACAAATTTACTTTGTTAATCATAAATAAGATTGCAATTCTTTCGGTAGAATTAGAGGCAGAGTGCTAGATCCATCAGCAGGGTCTTAATATTCAAAATTTGTCACTTGCTGGCTTCTTTCTTGAATACTTGTACGTGATGTTGGGTATTGCCTTAATTACTTTTTAGGACTGCTGATGGTCTAGTACCCGTTCTCCTTGTTCTTGGTGTTTAAAAATCTTATGTTATGGTAGTTAATTATCTAAGCATTTGGGGCTATTTCTAATCTTCAAGCTTTGCTGTCTTGCAGATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTAC</genome_strand>
        <mrna_strand>CCTCAACCTAGAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTG........................................................................................................................................................................GTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAG........................................................................................................GATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304121" ref_strand="+" ref_description="SGN-E304121 [cLEX-6-L14]">
      <seq>ctcaacctagagagagagtgagagagtgtaagagagaggttcaaagatggtgcagagactcacttaccgtaagcgccacagctatgccaccaaatccaaccaacaccgcgtcgtcaaaactcctggtgggaagttgatttatcagactaccaagaagagggctaatggtcccaagtgccctgtcactggaaagaggattcaggggattcctcacctgagaccagctgagtacaagaggtccaggttgtctaggaacaggaggactgtgaaccgtgcctatggcggagtattgtctggaggagcagttagggagaggatcgtccgtgctttcttggtggaagagcaaaaaattgttaagaaggttttgaagatccaaaaagccaaagaaaagttggcagctaagagttaagcagagagtttagaggaactttctttttatgttttgctgaaattttgacattcaagtgtttactagttttgtgctacaaattgaccttattgctacaacaatttacggcagttttttgctttattttgactccattgccattctatattttgattagtcttaatgtaccttatataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3282" stop="5652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3582" g_stop="3706" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3707" i_stop="3874" i_length="168">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3875" g_stop="3954" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="205" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3955" i_stop="4868" i_length="914">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4869" g_stop="4978" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="315" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4979" i_stop="5082" i_length="104">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5083" g_stop="5351" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="584" r_length="269" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="585" polyA_stop="597"/>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E304121" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3582" e_stop="3706"/>
          <exon e_start="3875" e_stop="3954"/>
          <exon e_start="4869" e_stop="4978"/>
          <exon e_start="5083" e_stop="5351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACCTAGAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTGGTACAAACATATCTTTTCTGTAGTTTGATTTGTGCTTATTCATTCAATTTGAAGTATAAATTAGTATTGCTATGATAAAGACTGAATAGATCAGAATGAGTGTAGACGATCGTAGCTTGTTGGGGATTGAGTAGTGGTTGATTTAACGGTTGATTGATTGGAATACAGGTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGGGTAATTTCATCTCTCTTTGTTTGCATTTCGTGATTCAATTGCATGAGCTTAATATTGTTTAATTTGATCGAAACTTTTTTTATTTTTTCTGTTGCAAGTGATGTTCTTTGTATTAAGTTTTTGACATACTCAGTAGTACAATTGTATCTACTGCATTTTGTTCACATGATTATGTATTCTCAGCAGCGACCCCTAGATCACTAAATGGACCCTCATTTTACACTTTACCCAAAGTAGTGTTGTTTCTGTTGTATCACATATTTAATTGGGTTTTGTTGTCTGAAATCTTATTTGTGGATGTATCAAATGCCTTTGCAAGAATAGATTTTGGTTGTTAAGTATATTCGATATGTTATTTTTCATTTTTAAGAATAGTTGTTTGATTTCTTTGACCAATTTCCAACTTAGATTGAAGCTAAAACATTTCTTCTGTTGTAGTATGAGCATGAAAGTTCAGTCTAGGTGTGATATTTCATTTTTTATTTTGTCCACTATTAAGATATTGTAGGTTTGGTTGCTCAATTCCATCCTTGTTATGCCCCTAATTAGGGTAGCTTGTAGCTCCTTCAAATTTTTCCATCAGATTTTATGGTGTCAATGTGTATTTCTAATTTGTCTAAGGAATGACAAATTTACTTTGTTAATCATAAATAAGATTGCAATTCTTTCGGTAGAATTAGAGGCAGAGTGCTAGATCCATCAGCAGGGTCTTAATATTCAAAATTTGTCACTTGCTGGCTTCTTTCTTGAATACTTGTACGTGATGTTGGGTATTGCCTTAATTACTTTTTAGGACTGCTGATGGTCTAGTACCCGTTCTCCTTGTTCTTGGTGTTTAAAAATCTTATGTTATGGTAGTTAATTATCTAAGCATTTGGGGCTATTTCTAATCTTCAAGCTTTGCTGTCTTGCAGATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTTATTTTGACTCCATTGCCATTCTATATTTTGTTTAGTCTTAATTTACCTTATAT</genome_strand>
        <mrna_strand>CTCAACCTAGAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTG........................................................................................................................................................................GTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAG........................................................................................................GATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTTATTTTGACTCCATTGCCATTCTATATTTTGATTAGTCTTAATGTACCTTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308031" ref_strand="+" ref_description="SGN-E308031 [cLEY-14-K6]">
      <seq>ctgaacctagagagagagtgagagagtgtaagagagaggatcaaagatggggcagagactcacttaccgtaagcgccacagctatgccaccaaatacaaccaacaccgcgtcgtcaaaactcctggtgggaagttgatttatcagactaccaagaagagggctaatggtcccaagtgccctgtcactggaaagaggattcaggggattcctcacctgagaccagctgagtacaagaggtccaggttgtctaggaacaggaggactgtgaaccgtgcctatggcggagtattgtctggaggagcagatagggagaggatcgtccgtgctttcttggtggaagagcaaaaaattgttaagaaggttttgaagatccaaaaagccaaagaaaagttggcagctaagagttaagcagagagtttagaggaactttctttttatgttttgctgaaattatgacattcaagtgtttactagttttgtgctacaaattgaccttattgctacaacaatttacggcagttttttgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3282" stop="5598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3582" g_stop="3706" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3707" i_stop="3874" i_length="168">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3875" g_stop="3954" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="205" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3955" i_stop="4868" i_length="914">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4869" g_stop="4978" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="315" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4979" i_stop="5082" i_length="104">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5083" g_stop="5298" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="531" r_length="216" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E308031" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3582" e_stop="3706"/>
          <exon e_start="3875" e_stop="3954"/>
          <exon e_start="4869" e_stop="4978"/>
          <exon e_start="5083" e_stop="5298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACCTAGAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTGGTACAAACATATCTTTTCTGTAGTTTGATTTGTGCTTATTCATTCAATTTGAAGTATAAATTAGTATTGCTATGATAAAGACTGAATAGATCAGAATGAGTGTAGACGATCGTAGCTTGTTGGGGATTGAGTAGTGGTTGATTTAACGGTTGATTGATTGGAATACAGGTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGGGTAATTTCATCTCTCTTTGTTTGCATTTCGTGATTCAATTGCATGAGCTTAATATTGTTTAATTTGATCGAAACTTTTTTTATTTTTTCTGTTGCAAGTGATGTTCTTTGTATTAAGTTTTTGACATACTCAGTAGTACAATTGTATCTACTGCATTTTGTTCACATGATTATGTATTCTCAGCAGCGACCCCTAGATCACTAAATGGACCCTCATTTTACACTTTACCCAAAGTAGTGTTGTTTCTGTTGTATCACATATTTAATTGGGTTTTGTTGTCTGAAATCTTATTTGTGGATGTATCAAATGCCTTTGCAAGAATAGATTTTGGTTGTTAAGTATATTCGATATGTTATTTTTCATTTTTAAGAATAGTTGTTTGATTTCTTTGACCAATTTCCAACTTAGATTGAAGCTAAAACATTTCTTCTGTTGTAGTATGAGCATGAAAGTTCAGTCTAGGTGTGATATTTCATTTTTTATTTTGTCCACTATTAAGATATTGTAGGTTTGGTTGCTCAATTCCATCCTTGTTATGCCCCTAATTAGGGTAGCTTGTAGCTCCTTCAAATTTTTCCATCAGATTTTATGGTGTCAATGTGTATTTCTAATTTGTCTAAGGAATGACAAATTTACTTTGTTAATCATAAATAAGATTGCAATTCTTTCGGTAGAATTAGAGGCAGAGTGCTAGATCCATCAGCAGGGTCTTAATATTCAAAATTTGTCACTTGCTGGCTTCTTTCTTGAATACTTGTACGTGATGTTGGGTATTGCCTTAATTACTTTTTAGGACTGCTGATGGTCTAGTACCCGTTCTCCTTGTTCTTGGTGTTTAAAAATCTTATGTTATGGTAGTTAATTATCTAAGCATTTGGGGCTATTTCTAATCTTCAAGCTTTGCTGTCTTGCAGATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTT</genome_strand>
        <mrna_strand>CTGAACCTAGAGAGAGAGTGAGAGAGTGTAAGAGAGAGGATCAAAGATGGGGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATACAACCAACACCGCGTCGTCAAAACTCCTG........................................................................................................................................................................GTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGATAGGGAGAG........................................................................................................GATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTATGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309191" ref_strand="+" ref_description="SGN-E309191 [cLEZ-12-M9]">
      <seq>ctcaacctatagagagagtgagagagtgtaagagagaggttcaaagatggtgcaaagactcacttaccgtaagcgccacagctatgccaccaaatccaaccaacaccgcgtcgtcaaaactcctggtgggaagttgatttatcagactaccaagaagagggctaatggtcccaagtgccctgtcactggaaagaggattcaggggattcctcacctgagaccagctgagtacaagaggtccaggttgtctaggaacaggaggactgtgaaccgtgcctatggcggagtattgtctggaggagcagttaaggagaggatcgtccgtgctttcttggtggaagagcaaaaaattggtaagaaggttttgaagatccaaaaagccaaagaaaagttggcagctaagagttaagcatagagtttagaggaactttctttttatgttttgctgaaattttgacattaagtgtttactagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3282" stop="5546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3582" g_stop="3706" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3707" i_stop="3874" i_length="168">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3875" g_stop="3954" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="205" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3955" i_stop="4868" i_length="914">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4869" g_stop="4978" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="315" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4979" i_stop="5082" i_length="104">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5083" g_stop="5246" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="478" r_length="163" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E309191" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3582" e_stop="3706"/>
          <exon e_start="3875" e_stop="3954"/>
          <exon e_start="4869" e_stop="4978"/>
          <exon e_start="5083" e_stop="5246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACCTAGAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTGGTACAAACATATCTTTTCTGTAGTTTGATTTGTGCTTATTCATTCAATTTGAAGTATAAATTAGTATTGCTATGATAAAGACTGAATAGATCAGAATGAGTGTAGACGATCGTAGCTTGTTGGGGATTGAGTAGTGGTTGATTTAACGGTTGATTGATTGGAATACAGGTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGGGTAATTTCATCTCTCTTTGTTTGCATTTCGTGATTCAATTGCATGAGCTTAATATTGTTTAATTTGATCGAAACTTTTTTTATTTTTTCTGTTGCAAGTGATGTTCTTTGTATTAAGTTTTTGACATACTCAGTAGTACAATTGTATCTACTGCATTTTGTTCACATGATTATGTATTCTCAGCAGCGACCCCTAGATCACTAAATGGACCCTCATTTTACACTTTACCCAAAGTAGTGTTGTTTCTGTTGTATCACATATTTAATTGGGTTTTGTTGTCTGAAATCTTATTTGTGGATGTATCAAATGCCTTTGCAAGAATAGATTTTGGTTGTTAAGTATATTCGATATGTTATTTTTCATTTTTAAGAATAGTTGTTTGATTTCTTTGACCAATTTCCAACTTAGATTGAAGCTAAAACATTTCTTCTGTTGTAGTATGAGCATGAAAGTTCAGTCTAGGTGTGATATTTCATTTTTTATTTTGTCCACTATTAAGATATTGTAGGTTTGGTTGCTCAATTCCATCCTTGTTATGCCCCTAATTAGGGTAGCTTGTAGCTCCTTCAAATTTTTCCATCAGATTTTATGGTGTCAATGTGTATTTCTAATTTGTCTAAGGAATGACAAATTTACTTTGTTAATCATAAATAAGATTGCAATTCTTTCGGTAGAATTAGAGGCAGAGTGCTAGATCCATCAGCAGGGTCTTAATATTCAAAATTTGTCACTTGCTGGCTTCTTTCTTGAATACTTGTACGTGATGTTGGGTATTGCCTTAATTACTTTTTAGGACTGCTGATGGTCTAGTACCCGTTCTCCTTGTTCTTGGTGTTTAAAAATCTTATGTTATGGTAGTTAATTATCTAAGCATTTGGGGCTATTTCTAATCTTCAAGCTTTGCTGTCTTGCAGATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTT</genome_strand>
        <mrna_strand>CTCAACCTATAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAAAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTG........................................................................................................................................................................GTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAAGGAGAG........................................................................................................GATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGGTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCATAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATT-AAGTGTTTACTAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340615" ref_strand="+" ref_description="SGN-E340615 [cTOF-1-E2]">
      <seq>ctcaacctagagagagagtgagagagtgtaagagagaggttcaaagatggtgcagagactcacttaccgtaagcgccacagctatgccaccaaatccaaccaacaccgcgtcgtcaaaactcctggtgggaagttgatttatcagactaccaagaagagggctaatggtcccaagtgccctgtcactggaaagaggattcaggggattcctcacctgagaccagctgagtacaagaggtccaggttgtctaggaacaggaggactgtgaaccgtgcctatggcggagtattgtctggaggagcagttagggagaggatcgtccgtgctttcttggtggaagagcaaaaaattgttaagaagggtttgaagatccaaaaagcccaagaaaagttggcagctaagagttaagcagagagtttagaagaactttcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3282" stop="5504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3582" g_stop="3706" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3707" i_stop="3874" i_length="168">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3875" g_stop="3954" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="205" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3955" i_stop="4868" i_length="914">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4869" g_stop="4978" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="315" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4979" i_stop="5082" i_length="104">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5083" g_stop="5204" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="437" r_length="122" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E340615" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3582" e_stop="3706"/>
          <exon e_start="3875" e_stop="3954"/>
          <exon e_start="4869" e_stop="4978"/>
          <exon e_start="5083" e_stop="5204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACCTAGAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTGGTACAAACATATCTTTTCTGTAGTTTGATTTGTGCTTATTCATTCAATTTGAAGTATAAATTAGTATTGCTATGATAAAGACTGAATAGATCAGAATGAGTGTAGACGATCGTAGCTTGTTGGGGATTGAGTAGTGGTTGATTTAACGGTTGATTGATTGGAATACAGGTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGGGTAATTTCATCTCTCTTTGTTTGCATTTCGTGATTCAATTGCATGAGCTTAATATTGTTTAATTTGATCGAAACTTTTTTTATTTTTTCTGTTGCAAGTGATGTTCTTTGTATTAAGTTTTTGACATACTCAGTAGTACAATTGTATCTACTGCATTTTGTTCACATGATTATGTATTCTCAGCAGCGACCCCTAGATCACTAAATGGACCCTCATTTTACACTTTACCCAAAGTAGTGTTGTTTCTGTTGTATCACATATTTAATTGGGTTTTGTTGTCTGAAATCTTATTTGTGGATGTATCAAATGCCTTTGCAAGAATAGATTTTGGTTGTTAAGTATATTCGATATGTTATTTTTCATTTTTAAGAATAGTTGTTTGATTTCTTTGACCAATTTCCAACTTAGATTGAAGCTAAAACATTTCTTCTGTTGTAGTATGAGCATGAAAGTTCAGTCTAGGTGTGATATTTCATTTTTTATTTTGTCCACTATTAAGATATTGTAGGTTTGGTTGCTCAATTCCATCCTTGTTATGCCCCTAATTAGGGTAGCTTGTAGCTCCTTCAAATTTTTCCATCAGATTTTATGGTGTCAATGTGTATTTCTAATTTGTCTAAGGAATGACAAATTTACTTTGTTAATCATAAATAAGATTGCAATTCTTTCGGTAGAATTAGAGGCAGAGTGCTAGATCCATCAGCAGGGTCTTAATATTCAAAATTTGTCACTTGCTGGCTTCTTTCTTGAATACTTGTACGTGATGTTGGGTATTGCCTTAATTACTTTTTAGGACTGCTGATGGTCTAGTACCCGTTCTCCTTGTTCTTGGTGTTTAAAAATCTTATGTTATGGTAGTTAATTATCTAAGCATTTGGGGCTATTTCTAATCTTCAAGCTTTGCTGTCTTGCAGATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTT</genome_strand>
        <mrna_strand>CTCAACCTAGAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTG........................................................................................................................................................................GTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAG........................................................................................................GATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGGTTTGAAGATCCAAAAAGCCCAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAAGAACTTTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356759" ref_strand="+" ref_description="SGN-E356759 [cTOS-21-H19]">
      <seq>tcaacctagagagagagtgagagagtgtaagagagaggttcaaagatggtgcagagactcacttaccgtaagcgccacagctatgccaccaaatccaaccaacaccgcgtcgtcaaaactcctggtgggaagttgatttatcagactaccaagaagagggctaatggtcccaagtgccctgtcactggaaagaggattcaggggattcctcacctgagaccagctgagtacaagaggtccaggttgtctaggaacaggaggactgtgaaccgtgcctatggcggagtattgtctggaggagcagttagggagaggatcgtccgtgctttcttggtggaagagcaaaaaattgttaagaaggttttgaagatccaaaaagccaaagaaaagttggcagctaagagttaagcagagagtttagaggaactttctttttatgttttgctgaaattttgacattcaagtgtttactagttttgtgctacaaattgaccttattgctacaacaatttacggcagttttttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3283" stop="5597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3583" g_stop="3706" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3707" i_stop="3874" i_length="168">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3875" g_stop="3954" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="204" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3955" i_stop="4868" i_length="914">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4869" g_stop="4978" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="314" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4979" i_stop="5082" i_length="104">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5083" g_stop="5297" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="529" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E356759" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3583" e_stop="3706"/>
          <exon e_start="3875" e_stop="3954"/>
          <exon e_start="4869" e_stop="4978"/>
          <exon e_start="5083" e_stop="5297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACCTAGAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTGGTACAAACATATCTTTTCTGTAGTTTGATTTGTGCTTATTCATTCAATTTGAAGTATAAATTAGTATTGCTATGATAAAGACTGAATAGATCAGAATGAGTGTAGACGATCGTAGCTTGTTGGGGATTGAGTAGTGGTTGATTTAACGGTTGATTGATTGGAATACAGGTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGGGTAATTTCATCTCTCTTTGTTTGCATTTCGTGATTCAATTGCATGAGCTTAATATTGTTTAATTTGATCGAAACTTTTTTTATTTTTTCTGTTGCAAGTGATGTTCTTTGTATTAAGTTTTTGACATACTCAGTAGTACAATTGTATCTACTGCATTTTGTTCACATGATTATGTATTCTCAGCAGCGACCCCTAGATCACTAAATGGACCCTCATTTTACACTTTACCCAAAGTAGTGTTGTTTCTGTTGTATCACATATTTAATTGGGTTTTGTTGTCTGAAATCTTATTTGTGGATGTATCAAATGCCTTTGCAAGAATAGATTTTGGTTGTTAAGTATATTCGATATGTTATTTTTCATTTTTAAGAATAGTTGTTTGATTTCTTTGACCAATTTCCAACTTAGATTGAAGCTAAAACATTTCTTCTGTTGTAGTATGAGCATGAAAGTTCAGTCTAGGTGTGATATTTCATTTTTTATTTTGTCCACTATTAAGATATTGTAGGTTTGGTTGCTCAATTCCATCCTTGTTATGCCCCTAATTAGGGTAGCTTGTAGCTCCTTCAAATTTTTCCATCAGATTTTATGGTGTCAATGTGTATTTCTAATTTGTCTAAGGAATGACAAATTTACTTTGTTAATCATAAATAAGATTGCAATTCTTTCGGTAGAATTAGAGGCAGAGTGCTAGATCCATCAGCAGGGTCTTAATATTCAAAATTTGTCACTTGCTGGCTTCTTTCTTGAATACTTGTACGTGATGTTGGGTATTGCCTTAATTACTTTTTAGGACTGCTGATGGTCTAGTACCCGTTCTCCTTGTTCTTGGTGTTTAAAAATCTTATGTTATGGTAGTTAATTATCTAAGCATTTGGGGCTATTTCTAATCTTCAAGCTTTGCTGTCTTGCAGATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTT</genome_strand>
        <mrna_strand>TCAACCTAGAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTG........................................................................................................................................................................GTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAG........................................................................................................GATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335653" ref_strand="+" ref_description="SGN-E335653 [cTOE-8-J19]">
      <seq>tcaacctatagagagagtgagagagtgtaagagagaggttcaaagatggtgcagagactcacttaccgtaagcgccacagctatgccaccaaatccaaccaacaccgcgtcgtcaaaactcctggtgggaagttgatttatcagactaccaagaagagggctaatggtcccaagtgccctgtcactggaaagaggattcaggggattcctcacctgagaccagctgagtacaagaggtccaggttgtctaggaacaggaggactgtgaaccgtgcctatggcggagtattgtctggaggagcagttatggagaggatcgtccgagctatcttggtggaagagcaaacaatcgctaagaatgttttgaagatccaaaaagccaaagaaaagttggcagctaagagttaagcagagagtttagaggaactttctttttatgttctgctgaaattctgacattcaagtgtttactagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3283" stop="5544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3583" g_stop="3706" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3707" i_stop="3874" i_length="168">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3875" g_stop="3954" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="204" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3955" i_stop="4868" i_length="914">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4869" g_stop="4978" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="314" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4979" i_stop="5082" i_length="104">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5083" g_stop="5244" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="476" r_length="162" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E335653" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3583" e_stop="3706"/>
          <exon e_start="3875" e_stop="3954"/>
          <exon e_start="4869" e_stop="4978"/>
          <exon e_start="5083" e_stop="5244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACCTAGAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTGGTACAAACATATCTTTTCTGTAGTTTGATTTGTGCTTATTCATTCAATTTGAAGTATAAATTAGTATTGCTATGATAAAGACTGAATAGATCAGAATGAGTGTAGACGATCGTAGCTTGTTGGGGATTGAGTAGTGGTTGATTTAACGGTTGATTGATTGGAATACAGGTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGGGTAATTTCATCTCTCTTTGTTTGCATTTCGTGATTCAATTGCATGAGCTTAATATTGTTTAATTTGATCGAAACTTTTTTTATTTTTTCTGTTGCAAGTGATGTTCTTTGTATTAAGTTTTTGACATACTCAGTAGTACAATTGTATCTACTGCATTTTGTTCACATGATTATGTATTCTCAGCAGCGACCCCTAGATCACTAAATGGACCCTCATTTTACACTTTACCCAAAGTAGTGTTGTTTCTGTTGTATCACATATTTAATTGGGTTTTGTTGTCTGAAATCTTATTTGTGGATGTATCAAATGCCTTTGCAAGAATAGATTTTGGTTGTTAAGTATATTCGATATGTTATTTTTCATTTTTAAGAATAGTTGTTTGATTTCTTTGACCAATTTCCAACTTAGATTGAAGCTAAAACATTTCTTCTGTTGTAGTATGAGCATGAAAGTTCAGTCTAGGTGTGATATTTCATTTTTTATTTTGTCCACTATTAAGATATTGTAGGTTTGGTTGCTCAATTCCATCCTTGTTATGCCCCTAATTAGGGTAGCTTGTAGCTCCTTCAAATTTTTCCATCAGATTTTATGGTGTCAATGTGTATTTCTAATTTGTCTAAGGAATGACAAATTTACTTTGTTAATCATAAATAAGATTGCAATTCTTTCGGTAGAATTAGAGGCAGAGTGCTAGATCCATCAGCAGGGTCTTAATATTCAAAATTTGTCACTTGCTGGCTTCTTTCTTGAATACTTGTACGTGATGTTGGGTATTGCCTTAATTACTTTTTAGGACTGCTGATGGTCTAGTACCCGTTCTCCTTGTTCTTGGTGTTTAAAAATCTTATGTTATGGTAGTTAATTATCTAAGCATTTGGGGCTATTTCTAATCTTCAAGCTTTGCTGTCTTGCAGATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTT</genome_strand>
        <mrna_strand>TCAACCTATAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTG........................................................................................................................................................................GTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTATGGAGAG........................................................................................................GATCGTCCGAGCTATCTTGGTGGAAGAGCAAACAATCGCTAAGAATGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTCTGCTGAAATTCTGACATTCAAGTGTTTACTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345248" ref_strand="+" ref_description="SGN-E345248 [cTOF-13-O10]">
      <seq>aacctagagagagagtgagagagtgtaagagagaggttcaaagatggtgcagagactcacttaccgtaagcgccacagctatgccaccaaatccaaccaacaccgcgtcgtcaaaactcctggtgggaagttgatttatcagactaccaagaagagggctaatggtcccaagtgccctgtcactggaaagaggattcaggggattcctcacctgagaccagctgagtacaagaggtccaggttgtctaggaacaggaggactgtgaaccgtgcctatggcggagtattgtctggaggagcagttagggagaggatcgtccgtgctttcttggtggaagagcaaaaaattgttaagaaggttttgaagatccaaaaagccaaagaaaagttggcagctaagagttaagcagagagtttagaggaactttctttttatgttttgctgaaattttgacattcaagtgtttactagttttgtgctacaaattgaccttattgctacaacaatttacggcagttttttgctttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3285" stop="5599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3585" g_stop="3706" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3707" i_stop="3874" i_length="168">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3875" g_stop="3954" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="202" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3955" i_stop="4868" i_length="914">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4869" g_stop="4978" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="312" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4979" i_stop="5082" i_length="104">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5083" g_stop="5298" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="528" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="529" polyA_stop="543"/>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E345248" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3585" e_stop="3706"/>
          <exon e_start="3875" e_stop="3954"/>
          <exon e_start="4869" e_stop="4978"/>
          <exon e_start="5083" e_stop="5298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTAGAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTGGTACAAACATATCTTTTCTGTAGTTTGATTTGTGCTTATTCATTCAATTTGAAGTATAAATTAGTATTGCTATGATAAAGACTGAATAGATCAGAATGAGTGTAGACGATCGTAGCTTGTTGGGGATTGAGTAGTGGTTGATTTAACGGTTGATTGATTGGAATACAGGTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGGGTAATTTCATCTCTCTTTGTTTGCATTTCGTGATTCAATTGCATGAGCTTAATATTGTTTAATTTGATCGAAACTTTTTTTATTTTTTCTGTTGCAAGTGATGTTCTTTGTATTAAGTTTTTGACATACTCAGTAGTACAATTGTATCTACTGCATTTTGTTCACATGATTATGTATTCTCAGCAGCGACCCCTAGATCACTAAATGGACCCTCATTTTACACTTTACCCAAAGTAGTGTTGTTTCTGTTGTATCACATATTTAATTGGGTTTTGTTGTCTGAAATCTTATTTGTGGATGTATCAAATGCCTTTGCAAGAATAGATTTTGGTTGTTAAGTATATTCGATATGTTATTTTTCATTTTTAAGAATAGTTGTTTGATTTCTTTGACCAATTTCCAACTTAGATTGAAGCTAAAACATTTCTTCTGTTGTAGTATGAGCATGAAAGTTCAGTCTAGGTGTGATATTTCATTTTTTATTTTGTCCACTATTAAGATATTGTAGGTTTGGTTGCTCAATTCCATCCTTGTTATGCCCCTAATTAGGGTAGCTTGTAGCTCCTTCAAATTTTTCCATCAGATTTTATGGTGTCAATGTGTATTTCTAATTTGTCTAAGGAATGACAAATTTACTTTGTTAATCATAAATAAGATTGCAATTCTTTCGGTAGAATTAGAGGCAGAGTGCTAGATCCATCAGCAGGGTCTTAATATTCAAAATTTGTCACTTGCTGGCTTCTTTCTTGAATACTTGTACGTGATGTTGGGTATTGCCTTAATTACTTTTTAGGACTGCTGATGGTCTAGTACCCGTTCTCCTTGTTCTTGGTGTTTAAAAATCTTATGTTATGGTAGTTAATTATCTAAGCATTTGGGGCTATTTCTAATCTTCAAGCTTTGCTGTCTTGCAGATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTT</genome_strand>
        <mrna_strand>AACCTAGAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTG........................................................................................................................................................................GTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAG........................................................................................................GATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355089" ref_strand="+" ref_description="SGN-E355089 [cTOS-18-O6]">
      <seq>ctagagagagagtgagagagtgtaagagagaggttcaaagatggtgcagagactcacttaccgtaagcgccacagctatgccaccaaatccaaccaacaccgcgtcgtcaaaactcctggtgggaagttgatttatcagactaccaagaagagggctaatggtcccaagtgccctgtcactggaaagaggattcaggggattcctcacctgagaccagctgagtacaagaggtccaggttgtctaggaacaggaggactgtgaaccgtgcctatggcggagtattgtctggaggagcagttagggagaggatcgtccgtgctttcttggtggaagagcaaaaaattgttaagaaggttttgaagatccaaaaagccaaagaaaagttggcagctaagagttaagcagagagtttagaggaactttctttttatgttttgctgaaattttgacattcaagtgtttactagttttgtgctacaaattgaccttattgctacaacaatttacggcagttttttgctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3288" stop="5597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3588" g_stop="3706" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3707" i_stop="3874" i_length="168">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3875" g_stop="3954" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="199" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3955" i_stop="4868" i_length="914">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4869" g_stop="4978" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="309" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4979" i_stop="5082" i_length="104">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5083" g_stop="5298" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="525" r_length="216" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E355089" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3588" e_stop="3706"/>
          <exon e_start="3875" e_stop="3954"/>
          <exon e_start="4869" e_stop="4978"/>
          <exon e_start="5083" e_stop="5298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTGGTACAAACATATCTTTTCTGTAGTTTGATTTGTGCTTATTCATTCAATTTGAAGTATAAATTAGTATTGCTATGATAAAGACTGAATAGATCAGAATGAGTGTAGACGATCGTAGCTTGTTGGGGATTGAGTAGTGGTTGATTTAACGGTTGATTGATTGGAATACAGGTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGGGTAATTTCATCTCTCTTTGTTTGCATTTCGTGATTCAATTGCATGAGCTTAATATTGTTTAATTTGATCGAAACTTTTTTTATTTTTTCTGTTGCAAGTGATGTTCTTTGTATTAAGTTTTTGACATACTCAGTAGTACAATTGTATCTACTGCATTTTGTTCACATGATTATGTATTCTCAGCAGCGACCCCTAGATCACTAAATGGACCCTCATTTTACACTTTACCCAAAGTAGTGTTGTTTCTGTTGTATCACATATTTAATTGGGTTTTGTTGTCTGAAATCTTATTTGTGGATGTATCAAATGCCTTTGCAAGAATAGATTTTGGTTGTTAAGTATATTCGATATGTTATTTTTCATTTTTAAGAATAGTTGTTTGATTTCTTTGACCAATTTCCAACTTAGATTGAAGCTAAAACATTTCTTCTGTTGTAGTATGAGCATGAAAGTTCAGTCTAGGTGTGATATTTCATTTTTTATTTTGTCCACTATTAAGATATTGTAGGTTTGGTTGCTCAATTCCATCCTTGTTATGCCCCTAATTAGGGTAGCTTGTAGCTCCTTCAAATTTTTCCATCAGATTTTATGGTGTCAATGTGTATTTCTAATTTGTCTAAGGAATGACAAATTTACTTTGTTAATCATAAATAAGATTGCAATTCTTTCGGTAGAATTAGAGGCAGAGTGCTAGATCCATCAGCAGGGTCTTAATATTCAAAATTTGTCACTTGCTGGCTTCTTTCTTGAATACTTGTACGTGATGTTGGGTATTGCCTTAATTACTTTTTAGGACTGCTGATGGTCTAGTACCCGTTCTCCTTGTTCTTGGTGTTTAAAAATCTTATGTTATGGTAGTTAATTATCTAAGCATTTGGGGCTATTTCTAATCTTCAAGCTTTGCTGTCTTGCAGATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTT</genome_strand>
        <mrna_strand>CTAGAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTG........................................................................................................................................................................GTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAG........................................................................................................GATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348795" ref_strand="+" ref_description="SGN-E348795 [cTOF-29-M12]">
      <seq>tagagagagagtgagagagtgtaagagagaggttcaaagatggtgcagagactcacttaccgtaagcgccacagctatgccaccaaatccaaccaacaccgcgtcgtcaaaactcctggtgggaagttgatttatcagactaccaagaagagggctaatggtcccaagtgccctgtcactggaaagaggattcaggggattcctcacctgagaccagctgagtacaagaggtccaggttgtctaggaacaggaggactgtgaaccgtgcctatggcggagtattgtctggaggagcagttagggagaggatcgtccgtgctttcttggtggaagagcaaaaaattgttaagaaggttttgaagatccaaaaagccaaagaaaagttggcagctaagagttaagcagagagtttagaggaactttctttttatgttttgctgaaattttgacattcaagtgtttactagttttgtgctacaaattgaccttattgctacaacaatttacggcagttttttgctttattttgactccattgccattctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3289" stop="5623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3589" g_stop="3706" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3707" i_stop="3874" i_length="168">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3875" g_stop="3954" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="198" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3955" i_stop="4868" i_length="914">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4869" g_stop="4978" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="308" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4979" i_stop="5082" i_length="104">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5083" g_stop="5320" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="546" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="547" polyA_stop="559"/>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E348795" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3589" e_stop="3706"/>
          <exon e_start="3875" e_stop="3954"/>
          <exon e_start="4869" e_stop="4978"/>
          <exon e_start="5083" e_stop="5320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTGGTACAAACATATCTTTTCTGTAGTTTGATTTGTGCTTATTCATTCAATTTGAAGTATAAATTAGTATTGCTATGATAAAGACTGAATAGATCAGAATGAGTGTAGACGATCGTAGCTTGTTGGGGATTGAGTAGTGGTTGATTTAACGGTTGATTGATTGGAATACAGGTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGGGTAATTTCATCTCTCTTTGTTTGCATTTCGTGATTCAATTGCATGAGCTTAATATTGTTTAATTTGATCGAAACTTTTTTTATTTTTTCTGTTGCAAGTGATGTTCTTTGTATTAAGTTTTTGACATACTCAGTAGTACAATTGTATCTACTGCATTTTGTTCACATGATTATGTATTCTCAGCAGCGACCCCTAGATCACTAAATGGACCCTCATTTTACACTTTACCCAAAGTAGTGTTGTTTCTGTTGTATCACATATTTAATTGGGTTTTGTTGTCTGAAATCTTATTTGTGGATGTATCAAATGCCTTTGCAAGAATAGATTTTGGTTGTTAAGTATATTCGATATGTTATTTTTCATTTTTAAGAATAGTTGTTTGATTTCTTTGACCAATTTCCAACTTAGATTGAAGCTAAAACATTTCTTCTGTTGTAGTATGAGCATGAAAGTTCAGTCTAGGTGTGATATTTCATTTTTTATTTTGTCCACTATTAAGATATTGTAGGTTTGGTTGCTCAATTCCATCCTTGTTATGCCCCTAATTAGGGTAGCTTGTAGCTCCTTCAAATTTTTCCATCAGATTTTATGGTGTCAATGTGTATTTCTAATTTGTCTAAGGAATGACAAATTTACTTTGTTAATCATAAATAAGATTGCAATTCTTTCGGTAGAATTAGAGGCAGAGTGCTAGATCCATCAGCAGGGTCTTAATATTCAAAATTTGTCACTTGCTGGCTTCTTTCTTGAATACTTGTACGTGATGTTGGGTATTGCCTTAATTACTTTTTAGGACTGCTGATGGTCTAGTACCCGTTCTCCTTGTTCTTGGTGTTTAAAAATCTTATGTTATGGTAGTTAATTATCTAAGCATTTGGGGCTATTTCTAATCTTCAAGCTTTGCTGTCTTGCAGATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTTATTTTGACTCCATTGCCATTCT</genome_strand>
        <mrna_strand>TAGAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTG........................................................................................................................................................................GTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAG........................................................................................................GATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTTATTTTGACTCCATTGCCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543159" ref_strand="+" ref_description="SGN-E543159 [TUS-64-N8]">
      <seq>gagagagtgagagagtgtaagagagaggttcaaagatggtgcagagactcacttaccgtaagcgccacagctatgccaccaaatccaaccaacaccgcgtcgtcaaaactcctggtgggaagttgatttatcagactaccaagaagagggctaatggtcccaagtgccctgtcactggaaagaggattcaggggattcctcacctgagaccagctgagtacaagaggtccaggttgtctaggaacaggaggactgtgaaccgtgcctatggcggagtattgtctggaggagcagttagggagaggatcgtccgtgctttcttggtggaagagcaaaaaattgttaagaaggttttgaagatccaaaaagccaaagaaaagttggcagctaagagttaagcagagagtttagaggaactttctttttatgttttgctgaaattttgacattcaagtgtttactagttttgtgctacaaattgaccttattgctacaacaaataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3293" stop="5581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3593" g_stop="3706" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3707" i_stop="3874" i_length="168">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3875" g_stop="3954" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="194" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3955" i_stop="4868" i_length="914">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4869" g_stop="4978" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="304" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4979" i_stop="5082" i_length="104">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5083" g_stop="5285" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="507" r_length="203" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E543159" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3593" e_stop="3706"/>
          <exon e_start="3875" e_stop="3954"/>
          <exon e_start="4869" e_stop="4978"/>
          <exon e_start="5083" e_stop="5285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTGGTACAAACATATCTTTTCTGTAGTTTGATTTGTGCTTATTCATTCAATTTGAAGTATAAATTAGTATTGCTATGATAAAGACTGAATAGATCAGAATGAGTGTAGACGATCGTAGCTTGTTGGGGATTGAGTAGTGGTTGATTTAACGGTTGATTGATTGGAATACAGGTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGGGTAATTTCATCTCTCTTTGTTTGCATTTCGTGATTCAATTGCATGAGCTTAATATTGTTTAATTTGATCGAAACTTTTTTTATTTTTTCTGTTGCAAGTGATGTTCTTTGTATTAAGTTTTTGACATACTCAGTAGTACAATTGTATCTACTGCATTTTGTTCACATGATTATGTATTCTCAGCAGCGACCCCTAGATCACTAAATGGACCCTCATTTTACACTTTACCCAAAGTAGTGTTGTTTCTGTTGTATCACATATTTAATTGGGTTTTGTTGTCTGAAATCTTATTTGTGGATGTATCAAATGCCTTTGCAAGAATAGATTTTGGTTGTTAAGTATATTCGATATGTTATTTTTCATTTTTAAGAATAGTTGTTTGATTTCTTTGACCAATTTCCAACTTAGATTGAAGCTAAAACATTTCTTCTGTTGTAGTATGAGCATGAAAGTTCAGTCTAGGTGTGATATTTCATTTTTTATTTTGTCCACTATTAAGATATTGTAGGTTTGGTTGCTCAATTCCATCCTTGTTATGCCCCTAATTAGGGTAGCTTGTAGCTCCTTCAAATTTTTCCATCAGATTTTATGGTGTCAATGTGTATTTCTAATTTGTCTAAGGAATGACAAATTTACTTTGTTAATCATAAATAAGATTGCAATTCTTTCGGTAGAATTAGAGGCAGAGTGCTAGATCCATCAGCAGGGTCTTAATATTCAAAATTTGTCACTTGCTGGCTTCTTTCTTGAATACTTGTACGTGATGTTGGGTATTGCCTTAATTACTTTTTAGGACTGCTGATGGTCTAGTACCCGTTCTCCTTGTTCTTGGTGTTTAAAAATCTTATGTTATGGTAGTTAATTATCTAAGCATTTGGGGCTATTTCTAATCTTCAAGCTTTGCTGTCTTGCAGATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGC</genome_strand>
        <mrna_strand>GAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTG........................................................................................................................................................................GTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAG........................................................................................................GATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAAATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246476" ref_strand="+" ref_description="SGN-E246476 [cLEF-52-N1]">
      <seq>gagagagtgagagagtgtaagagagaggttcaaagatggtgcagagactcacttaccgtaagcgccacagctatgccaccaaatccaaccaacaccgcgtcgtcaaaactcctggtgggaagttgatttatcagactaccaagaagagggctaatggtcccaagtgccctgtcactggaaagaggattcaggggattcctcacctgagaccagctgagtacaagaggtccaggttgtctaggaacaggaggactgtgaaccgtgcctatggcggagtattgtctggaggagcagttagggagaggatcgtccgtgctttcttggtggaagagcaaaaaattgttaagaaggttttgaagatccaaaaagccaaagaaaagttggcagctaagagttaagcagagagtttagaggaactttctttttatgttttgctgaaattttgacattcaagtgtttactagttttgtgctacaaattgaccttattgctacaacaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3293" stop="5581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3593" g_stop="3706" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3707" i_stop="3874" i_length="168">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3875" g_stop="3954" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="194" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3955" i_stop="4868" i_length="914">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4869" g_stop="4978" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="304" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4979" i_stop="5082" i_length="104">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5083" g_stop="5281" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="503" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E246476" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3593" e_stop="3706"/>
          <exon e_start="3875" e_stop="3954"/>
          <exon e_start="4869" e_stop="4978"/>
          <exon e_start="5083" e_stop="5281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTGGTACAAACATATCTTTTCTGTAGTTTGATTTGTGCTTATTCATTCAATTTGAAGTATAAATTAGTATTGCTATGATAAAGACTGAATAGATCAGAATGAGTGTAGACGATCGTAGCTTGTTGGGGATTGAGTAGTGGTTGATTTAACGGTTGATTGATTGGAATACAGGTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGGGTAATTTCATCTCTCTTTGTTTGCATTTCGTGATTCAATTGCATGAGCTTAATATTGTTTAATTTGATCGAAACTTTTTTTATTTTTTCTGTTGCAAGTGATGTTCTTTGTATTAAGTTTTTGACATACTCAGTAGTACAATTGTATCTACTGCATTTTGTTCACATGATTATGTATTCTCAGCAGCGACCCCTAGATCACTAAATGGACCCTCATTTTACACTTTACCCAAAGTAGTGTTGTTTCTGTTGTATCACATATTTAATTGGGTTTTGTTGTCTGAAATCTTATTTGTGGATGTATCAAATGCCTTTGCAAGAATAGATTTTGGTTGTTAAGTATATTCGATATGTTATTTTTCATTTTTAAGAATAGTTGTTTGATTTCTTTGACCAATTTCCAACTTAGATTGAAGCTAAAACATTTCTTCTGTTGTAGTATGAGCATGAAAGTTCAGTCTAGGTGTGATATTTCATTTTTTATTTTGTCCACTATTAAGATATTGTAGGTTTGGTTGCTCAATTCCATCCTTGTTATGCCCCTAATTAGGGTAGCTTGTAGCTCCTTCAAATTTTTCCATCAGATTTTATGGTGTCAATGTGTATTTCTAATTTGTCTAAGGAATGACAAATTTACTTTGTTAATCATAAATAAGATTGCAATTCTTTCGGTAGAATTAGAGGCAGAGTGCTAGATCCATCAGCAGGGTCTTAATATTCAAAATTTGTCACTTGCTGGCTTCTTTCTTGAATACTTGTACGTGATGTTGGGTATTGCCTTAATTACTTTTTAGGACTGCTGATGGTCTAGTACCCGTTCTCCTTGTTCTTGGTGTTTAAAAATCTTATGTTATGGTAGTTAATTATCTAAGCATTTGGGGCTATTTCTAATCTTCAAGCTTTGCTGTCTTGCAGATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTA</genome_strand>
        <mrna_strand>GAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTG........................................................................................................................................................................GTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAG........................................................................................................GATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548832" ref_strand="+" ref_description="SGN-E548832 [TUS-64-N8](-)">
      <seq>gagagagtgagagagtgtaagagagaggttcaaagatggtgcagagactcacttaccgtaagcgccacagctatgccaccaaatccaaccaacaccgcgtcgtcaaaactcctggtgggaagttgatttatcagactaccaagaagagggctaatggtcccaagtgccctgtcactggaaagaggattcaggggattcctcacctgagaccagctgagtacaagaggtccaggttgtctaggaacaggaggactgtgaaccgtgcctatggcggagtattgtctggaggagcagttagggagaggatcgtccgtgctttcttggtggaagagcaaaaaattgttaagaaggttttgaagatccaaaaagccaaagaaaagttggcagctaagagttaagcagagagtttagaggaactttctttttatgttttgctgaaattttgacattcaagtgtttactagttttgtgctacaaattgaccttattgctacaacaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3293" stop="5577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3593" g_stop="3706" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3707" i_stop="3874" i_length="168">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3875" g_stop="3954" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="194" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3955" i_stop="4868" i_length="914">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4869" g_stop="4978" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="304" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4979" i_stop="5082" i_length="104">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5083" g_stop="5276" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="498" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E548832" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3593" e_stop="3706"/>
          <exon e_start="3875" e_stop="3954"/>
          <exon e_start="4869" e_stop="4978"/>
          <exon e_start="5083" e_stop="5276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTGGTACAAACATATCTTTTCTGTAGTTTGATTTGTGCTTATTCATTCAATTTGAAGTATAAATTAGTATTGCTATGATAAAGACTGAATAGATCAGAATGAGTGTAGACGATCGTAGCTTGTTGGGGATTGAGTAGTGGTTGATTTAACGGTTGATTGATTGGAATACAGGTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGGGTAATTTCATCTCTCTTTGTTTGCATTTCGTGATTCAATTGCATGAGCTTAATATTGTTTAATTTGATCGAAACTTTTTTTATTTTTTCTGTTGCAAGTGATGTTCTTTGTATTAAGTTTTTGACATACTCAGTAGTACAATTGTATCTACTGCATTTTGTTCACATGATTATGTATTCTCAGCAGCGACCCCTAGATCACTAAATGGACCCTCATTTTACACTTTACCCAAAGTAGTGTTGTTTCTGTTGTATCACATATTTAATTGGGTTTTGTTGTCTGAAATCTTATTTGTGGATGTATCAAATGCCTTTGCAAGAATAGATTTTGGTTGTTAAGTATATTCGATATGTTATTTTTCATTTTTAAGAATAGTTGTTTGATTTCTTTGACCAATTTCCAACTTAGATTGAAGCTAAAACATTTCTTCTGTTGTAGTATGAGCATGAAAGTTCAGTCTAGGTGTGATATTTCATTTTTTATTTTGTCCACTATTAAGATATTGTAGGTTTGGTTGCTCAATTCCATCCTTGTTATGCCCCTAATTAGGGTAGCTTGTAGCTCCTTCAAATTTTTCCATCAGATTTTATGGTGTCAATGTGTATTTCTAATTTGTCTAAGGAATGACAAATTTACTTTGTTAATCATAAATAAGATTGCAATTCTTTCGGTAGAATTAGAGGCAGAGTGCTAGATCCATCAGCAGGGTCTTAATATTCAAAATTTGTCACTTGCTGGCTTCTTTCTTGAATACTTGTACGTGATGTTGGGTATTGCCTTAATTACTTTTTAGGACTGCTGATGGTCTAGTACCCGTTCTCCTTGTTCTTGGTGTTTAAAAATCTTATGTTATGGTAGTTAATTATCTAAGCATTTGGGGCTATTTCTAATCTTCAAGCTTTGCTGTCTTGCAGATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACA</genome_strand>
        <mrna_strand>GAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTG........................................................................................................................................................................GTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAG........................................................................................................GATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302019" ref_strand="+" ref_description="SGN-E302019 [cLEX-3-I8]">
      <seq>agagagtgagagagtgtaagagagaggttcaaagatggtgcagagactcacttaccgtaagcgccacagctatgccaccaaatccaaccaacaccgcgtcgtcaaaactcctggtgggaagttgatttatcagactaccaagaagagggctaatggtcccaagtgccctgtcactggaaagaggattcaggggattcctcacctgagaccagctgagtacaagaggtccaggttgtctaggaacaggaggactgtgaaccgtgcctatggcggagtattgtctggaggagcagttagggagaggatcgtccgtgctttcttggtggaagagcaaaaaattgttaagaaggttttgaagatccaaaaagccaaagaaaagttggcagctaagagttaagcagagagtttagaggaactttctttttatgttttgctgaaattttgacattcaagagtttactagttttgtgctacaaattgaccttattgctacaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3294" stop="5577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3594" g_stop="3706" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3707" i_stop="3874" i_length="168">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3875" g_stop="3954" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="193" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3955" i_stop="4868" i_length="914">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4869" g_stop="4978" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="303" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4979" i_stop="5082" i_length="104">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5083" g_stop="5285" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="506" r_length="203" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E302019" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3594" e_stop="3706"/>
          <exon e_start="3875" e_stop="3954"/>
          <exon e_start="4869" e_stop="4978"/>
          <exon e_start="5083" e_stop="5285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTGGTACAAACATATCTTTTCTGTAGTTTGATTTGTGCTTATTCATTCAATTTGAAGTATAAATTAGTATTGCTATGATAAAGACTGAATAGATCAGAATGAGTGTAGACGATCGTAGCTTGTTGGGGATTGAGTAGTGGTTGATTTAACGGTTGATTGATTGGAATACAGGTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGGGTAATTTCATCTCTCTTTGTTTGCATTTCGTGATTCAATTGCATGAGCTTAATATTGTTTAATTTGATCGAAACTTTTTTTATTTTTTCTGTTGCAAGTGATGTTCTTTGTATTAAGTTTTTGACATACTCAGTAGTACAATTGTATCTACTGCATTTTGTTCACATGATTATGTATTCTCAGCAGCGACCCCTAGATCACTAAATGGACCCTCATTTTACACTTTACCCAAAGTAGTGTTGTTTCTGTTGTATCACATATTTAATTGGGTTTTGTTGTCTGAAATCTTATTTGTGGATGTATCAAATGCCTTTGCAAGAATAGATTTTGGTTGTTAAGTATATTCGATATGTTATTTTTCATTTTTAAGAATAGTTGTTTGATTTCTTTGACCAATTTCCAACTTAGATTGAAGCTAAAACATTTCTTCTGTTGTAGTATGAGCATGAAAGTTCAGTCTAGGTGTGATATTTCATTTTTTATTTTGTCCACTATTAAGATATTGTAGGTTTGGTTGCTCAATTCCATCCTTGTTATGCCCCTAATTAGGGTAGCTTGTAGCTCCTTCAAATTTTTCCATCAGATTTTATGGTGTCAATGTGTATTTCTAATTTGTCTAAGGAATGACAAATTTACTTTGTTAATCATAAATAAGATTGCAATTCTTTCGGTAGAATTAGAGGCAGAGTGCTAGATCCATCAGCAGGGTCTTAATATTCAAAATTTGTCACTTGCTGGCTTCTTTCTTGAATACTTGTACGTGATGTTGGGTATTGCCTTAATTACTTTTTAGGACTGCTGATGGTCTAGTACCCGTTCTCCTTGTTCTTGGTGTTTAAAAATCTTATGTTATGGTAGTTAATTATCTAAGCATTTGGGGCTATTTCTAATCTTCAAGCTTTGCTGTCTTGCAGATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGC</genome_strand>
        <mrna_strand>AGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTG........................................................................................................................................................................GTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAG........................................................................................................GATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGAGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718702" ref_strand="+" ref_description="SGN-E718702 [FC05CA09]">
      <seq>gagtgtaagagagaggttccccgatggtgcagagactcacttaccgtaagcgccacagctatgccaccaaatccaaccaacaccgcgtcgtcaaaactcctggtgggaagttgatttatcagactaccaagaagagggctaatggtcccaagtgccctgtcactggaaagaggattcaggggattcctcacctgagaccagctgagtacaagaggtccaggttgtctaggaacaggaggactgtgaaccgtgcctatggcggagtattgtctggaggagcagttagggagaggatcgtccgtgctttcttggtggaagagcaaaaaattgttaagaaggttttgaagatccaaaaagccaaagaaaagttggcagctaagagttaagcagagagtttagaggaactttctttttatgttttgctgaaattttgacattcaagtgtttactagttttgtgctacaaattgaccttattgctacaacaatttacggcagttttttgctttattttgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3327" stop="5605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3605" g_stop="3706" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3707" i_stop="3874" i_length="168">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3875" g_stop="3954" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="182" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3955" i_stop="4868" i_length="914">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4869" g_stop="4978" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="292" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4979" i_stop="5082" i_length="104">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5083" g_stop="5313" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="523" r_length="231" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E718702" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3605" e_stop="3706"/>
          <exon e_start="3875" e_stop="3954"/>
          <exon e_start="4869" e_stop="4978"/>
          <exon e_start="5083" e_stop="5313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTGGTACAAACATATCTTTTCTGTAGTTTGATTTGTGCTTATTCATTCAATTTGAAGTATAAATTAGTATTGCTATGATAAAGACTGAATAGATCAGAATGAGTGTAGACGATCGTAGCTTGTTGGGGATTGAGTAGTGGTTGATTTAACGGTTGATTGATTGGAATACAGGTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGGGTAATTTCATCTCTCTTTGTTTGCATTTCGTGATTCAATTGCATGAGCTTAATATTGTTTAATTTGATCGAAACTTTTTTTATTTTTTCTGTTGCAAGTGATGTTCTTTGTATTAAGTTTTTGACATACTCAGTAGTACAATTGTATCTACTGCATTTTGTTCACATGATTATGTATTCTCAGCAGCGACCCCTAGATCACTAAATGGACCCTCATTTTACACTTTACCCAAAGTAGTGTTGTTTCTGTTGTATCACATATTTAATTGGGTTTTGTTGTCTGAAATCTTATTTGTGGATGTATCAAATGCCTTTGCAAGAATAGATTTTGGTTGTTAAGTATATTCGATATGTTATTTTTCATTTTTAAGAATAGTTGTTTGATTTCTTTGACCAATTTCCAACTTAGATTGAAGCTAAAACATTTCTTCTGTTGTAGTATGAGCATGAAAGTTCAGTCTAGGTGTGATATTTCATTTTTTATTTTGTCCACTATTAAGATATTGTAGGTTTGGTTGCTCAATTCCATCCTTGTTATGCCCCTAATTAGGGTAGCTTGTAGCTCCTTCAAATTTTTCCATCAGATTTTATGGTGTCAATGTGTATTTCTAATTTGTCTAAGGAATGACAAATTTACTTTGTTAATCATAAATAAGATTGCAATTCTTTCGGTAGAATTAGAGGCAGAGTGCTAGATCCATCAGCAGGGTCTTAATATTCAAAATTTGTCACTTGCTGGCTTCTTTCTTGAATACTTGTACGTGATGTTGGGTATTGCCTTAATTACTTTTTAGGACTGCTGATGGTCTAGTACCCGTTCTCCTTGTTCTTGGTGTTTAAAAATCTTATGTTATGGTAGTTAATTATCTAAGCATTTGGGGCTATTTCTAATCTTCAAGCTTTGCTGTCTTGCAGATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTTATTTTGACTCCATTG</genome_strand>
        <mrna_strand>GAGTGTAAGAGAGAGGTTCCCCGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTG........................................................................................................................................................................GTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAG........................................................................................................GATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTTATTTTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298398" ref_strand="+" ref_description="SGN-E298398 [cLET-41-F24]">
      <seq>aagagagaggttcaaagatggtgcagagactcacttaccgtaagcgccacagctatgccaccaaatccaaccaacaccgcgtcgtcaaaactcctggtgggaagttgatttatcagactaccaagaagagggctaatggtcccaagtgccctgtcactggaaagaggattcaggggattcctcacctgagaccagctgagtacaagaggtccaggttgtctaggaacaggaggactgtgaaccgtgcctatggcggagtattgtctggaggagcagttagggagaggatcgtccgtgctttcttggtggaagagcaaaaaattgttaagaaggttttgaagatccaaaaagccaaagaaaagttggcagctaagagttaagcagagagtttagaggaactttctttttatgttttgctgaaattttgacattcaagtgtttactagttttgtgctacaaattgaccttattgctacaacaatttacggcagttttttgctctattttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3311" stop="5605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3611" g_stop="3706" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3707" i_stop="3874" i_length="168">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3875" g_stop="3954" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="176" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3955" i_stop="4868" i_length="914">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4869" g_stop="4978" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="286" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4979" i_stop="5082" i_length="104">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5083" g_stop="5305" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="509" r_length="223" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="510" polyA_stop="519"/>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E298398" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3611" e_stop="3706"/>
          <exon e_start="3875" e_stop="3954"/>
          <exon e_start="4869" e_stop="4978"/>
          <exon e_start="5083" e_stop="5305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTGGTACAAACATATCTTTTCTGTAGTTTGATTTGTGCTTATTCATTCAATTTGAAGTATAAATTAGTATTGCTATGATAAAGACTGAATAGATCAGAATGAGTGTAGACGATCGTAGCTTGTTGGGGATTGAGTAGTGGTTGATTTAACGGTTGATTGATTGGAATACAGGTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGGGTAATTTCATCTCTCTTTGTTTGCATTTCGTGATTCAATTGCATGAGCTTAATATTGTTTAATTTGATCGAAACTTTTTTTATTTTTTCTGTTGCAAGTGATGTTCTTTGTATTAAGTTTTTGACATACTCAGTAGTACAATTGTATCTACTGCATTTTGTTCACATGATTATGTATTCTCAGCAGCGACCCCTAGATCACTAAATGGACCCTCATTTTACACTTTACCCAAAGTAGTGTTGTTTCTGTTGTATCACATATTTAATTGGGTTTTGTTGTCTGAAATCTTATTTGTGGATGTATCAAATGCCTTTGCAAGAATAGATTTTGGTTGTTAAGTATATTCGATATGTTATTTTTCATTTTTAAGAATAGTTGTTTGATTTCTTTGACCAATTTCCAACTTAGATTGAAGCTAAAACATTTCTTCTGTTGTAGTATGAGCATGAAAGTTCAGTCTAGGTGTGATATTTCATTTTTTATTTTGTCCACTATTAAGATATTGTAGGTTTGGTTGCTCAATTCCATCCTTGTTATGCCCCTAATTAGGGTAGCTTGTAGCTCCTTCAAATTTTTCCATCAGATTTTATGGTGTCAATGTGTATTTCTAATTTGTCTAAGGAATGACAAATTTACTTTGTTAATCATAAATAAGATTGCAATTCTTTCGGTAGAATTAGAGGCAGAGTGCTAGATCCATCAGCAGGGTCTTAATATTCAAAATTTGTCACTTGCTGGCTTCTTTCTTGAATACTTGTACGTGATGTTGGGTATTGCCTTAATTACTTTTTAGGACTGCTGATGGTCTAGTACCCGTTCTCCTTGTTCTTGGTGTTTAAAAATCTTATGTTATGGTAGTTAATTATCTAAGCATTTGGGGCTATTTCTAATCTTCAAGCTTTGCTGTCTTGCAGATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTTATTTTGA</genome_strand>
        <mrna_strand>AAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTG........................................................................................................................................................................GTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAG........................................................................................................GATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTCTATTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716530" ref_strand="+" ref_description="SGN-E716530 [FB17BC05]">
      <seq>gagaggttcaaagatggtgcagagactcacttaccgtaagcgccacagctatgccaccaaatccaaccaacaccgcgtcgtcaaaactcctggtgggaagttgatttatcagactaccaagaagagggctaatggtcccaagtgccctgtcactggaaagaggattcaggggattcctcacctgagaccagctgagtacaagaggtccaggttgtctaggaacaggaggactgtgaaccgtgcctatggcggagtattgtctggaggagcagttagggagaggatcgtccgtgctttcttggtggaagagcaaaaaattgttaagaaggttttgaagatccaaaaagccaaagaaaagttggcagctaagagttaagcagagagtttagaggaactttctttttatgttttgctgaaattttgacattcaagtgtttactagttttgtgctacaaattgaccttattgctacaacaatttacggcagttttttgctttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3315" stop="5599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3615" g_stop="3706" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3707" i_stop="3874" i_length="168">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3875" g_stop="3954" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="172" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3955" i_stop="4868" i_length="914">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4869" g_stop="4978" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="282" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4979" i_stop="5082" i_length="104">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5083" g_stop="5298" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="498" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="499" polyA_stop="511"/>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E716530" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3615" e_stop="3706"/>
          <exon e_start="3875" e_stop="3954"/>
          <exon e_start="4869" e_stop="4978"/>
          <exon e_start="5083" e_stop="5298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTGGTACAAACATATCTTTTCTGTAGTTTGATTTGTGCTTATTCATTCAATTTGAAGTATAAATTAGTATTGCTATGATAAAGACTGAATAGATCAGAATGAGTGTAGACGATCGTAGCTTGTTGGGGATTGAGTAGTGGTTGATTTAACGGTTGATTGATTGGAATACAGGTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGGGTAATTTCATCTCTCTTTGTTTGCATTTCGTGATTCAATTGCATGAGCTTAATATTGTTTAATTTGATCGAAACTTTTTTTATTTTTTCTGTTGCAAGTGATGTTCTTTGTATTAAGTTTTTGACATACTCAGTAGTACAATTGTATCTACTGCATTTTGTTCACATGATTATGTATTCTCAGCAGCGACCCCTAGATCACTAAATGGACCCTCATTTTACACTTTACCCAAAGTAGTGTTGTTTCTGTTGTATCACATATTTAATTGGGTTTTGTTGTCTGAAATCTTATTTGTGGATGTATCAAATGCCTTTGCAAGAATAGATTTTGGTTGTTAAGTATATTCGATATGTTATTTTTCATTTTTAAGAATAGTTGTTTGATTTCTTTGACCAATTTCCAACTTAGATTGAAGCTAAAACATTTCTTCTGTTGTAGTATGAGCATGAAAGTTCAGTCTAGGTGTGATATTTCATTTTTTATTTTGTCCACTATTAAGATATTGTAGGTTTGGTTGCTCAATTCCATCCTTGTTATGCCCCTAATTAGGGTAGCTTGTAGCTCCTTCAAATTTTTCCATCAGATTTTATGGTGTCAATGTGTATTTCTAATTTGTCTAAGGAATGACAAATTTACTTTGTTAATCATAAATAAGATTGCAATTCTTTCGGTAGAATTAGAGGCAGAGTGCTAGATCCATCAGCAGGGTCTTAATATTCAAAATTTGTCACTTGCTGGCTTCTTTCTTGAATACTTGTACGTGATGTTGGGTATTGCCTTAATTACTTTTTAGGACTGCTGATGGTCTAGTACCCGTTCTCCTTGTTCTTGGTGTTTAAAAATCTTATGTTATGGTAGTTAATTATCTAAGCATTTGGGGCTATTTCTAATCTTCAAGCTTTGCTGTCTTGCAGATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTT</genome_strand>
        <mrna_strand>GAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTG........................................................................................................................................................................GTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAG........................................................................................................GATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234733" ref_strand="+" ref_description="SGN-E234733 [cLEL-6-J2](-)">
      <seq>aatccaaccaacaccgcgtcgtcaaaactcctggtgggaagttgatttatcagactaccaagaagagggctaatggtcccaagtgccctgtcactggaaagaggattcaggggattcctcacctgagaccagctgagtacaagaggtccaggttgtctaggaacaggaggactgtgaaccgtgcctatggcggagtattgtctggaggagcagttagggagaggatcgtccgtgctttcttggtggaagagcaaaaaattgttaagaaggttttgaagatccaaaaagccaaagaaaagttggcagctaagagttaagcagagagtttagaggaactttctttttatgttttgctgaaattttgacattcaagtgtttactagttttgtgctacaaattgaccttattgctacaacaatttacggcagttttttgctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3374" stop="5596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3674" g_stop="3706" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3707" i_stop="3874" i_length="168">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3875" g_stop="3954" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="113" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3955" i_stop="4868" i_length="914">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4869" g_stop="4978" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="223" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4979" i_stop="5082" i_length="104">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5083" g_stop="5293" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="434" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="438" polyA_stop="456"/>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E234733" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3674" e_stop="3706"/>
          <exon e_start="3875" e_stop="3954"/>
          <exon e_start="4869" e_stop="4978"/>
          <exon e_start="5083" e_stop="5293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCAACCAACACCGCGTCGTCAAAACTCCTGGTACAAACATATCTTTTCTGTAGTTTGATTTGTGCTTATTCATTCAATTTGAAGTATAAATTAGTATTGCTATGATAAAGACTGAATAGATCAGAATGAGTGTAGACGATCGTAGCTTGTTGGGGATTGAGTAGTGGTTGATTTAACGGTTGATTGATTGGAATACAGGTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGGGTAATTTCATCTCTCTTTGTTTGCATTTCGTGATTCAATTGCATGAGCTTAATATTGTTTAATTTGATCGAAACTTTTTTTATTTTTTCTGTTGCAAGTGATGTTCTTTGTATTAAGTTTTTGACATACTCAGTAGTACAATTGTATCTACTGCATTTTGTTCACATGATTATGTATTCTCAGCAGCGACCCCTAGATCACTAAATGGACCCTCATTTTACACTTTACCCAAAGTAGTGTTGTTTCTGTTGTATCACATATTTAATTGGGTTTTGTTGTCTGAAATCTTATTTGTGGATGTATCAAATGCCTTTGCAAGAATAGATTTTGGTTGTTAAGTATATTCGATATGTTATTTTTCATTTTTAAGAATAGTTGTTTGATTTCTTTGACCAATTTCCAACTTAGATTGAAGCTAAAACATTTCTTCTGTTGTAGTATGAGCATGAAAGTTCAGTCTAGGTGTGATATTTCATTTTTTATTTTGTCCACTATTAAGATATTGTAGGTTTGGTTGCTCAATTCCATCCTTGTTATGCCCCTAATTAGGGTAGCTTGTAGCTCCTTCAAATTTTTCCATCAGATTTTATGGTGTCAATGTGTATTTCTAATTTGTCTAAGGAATGACAAATTTACTTTGTTAATCATAAATAAGATTGCAATTCTTTCGGTAGAATTAGAGGCAGAGTGCTAGATCCATCAGCAGGGTCTTAATATTCAAAATTTGTCACTTGCTGGCTTCTTTCTTGAATACTTGTACGTGATGTTGGGTATTGCCTTAATTACTTTTTAGGACTGCTGATGGTCTAGTACCCGTTCTCCTTGTTCTTGGTGTTTAAAAATCTTATGTTATGGTAGTTAATTATCTAAGCATTTGGGGCTATTTCTAATCTTCAAGCTTTGCTGTCTTGCAGATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTT</genome_strand>
        <mrna_strand>AATCCAACCAACACCGCGTCGTCAAAACTCCTG........................................................................................................................................................................GTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAG........................................................................................................GATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235021" ref_strand="+" ref_description="SGN-E235021 [cLEL-6-J2](-)">
      <seq>agactaccaagaagagggctaatggtcccaagtgccctgtcactggaaagaggattcaggggattcctcacctgagaccagctgagtacaagaggtccaggttgtctaggaacaggaggactgtgaaccgtgcctatggcggagtattgtctggaggagcagttagggagaggatcgtccgtgctttcttggtggaagagcaaaaaattgttaagaaggttttgaagatccaaaaagccaaagaaaagttggcagctaagagttaagcagagagtttagaggaactttctttttatgttttgctgaaattttgacattcaagtgtttactagttttgtgctacaaattgaccttattgctacaacaatttacggcagttttttgctttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3593" stop="5599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3893" g_stop="3954" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3955" i_stop="4868" i_length="914">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4869" g_stop="4978" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="172" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4979" i_stop="5082" i_length="104">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5083" g_stop="5298" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="388" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="389" polyA_stop="405"/>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E235021" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3893" e_stop="3954"/>
          <exon e_start="4869" e_stop="4978"/>
          <exon e_start="5083" e_stop="5298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGGGTAATTTCATCTCTCTTTGTTTGCATTTCGTGATTCAATTGCATGAGCTTAATATTGTTTAATTTGATCGAAACTTTTTTTATTTTTTCTGTTGCAAGTGATGTTCTTTGTATTAAGTTTTTGACATACTCAGTAGTACAATTGTATCTACTGCATTTTGTTCACATGATTATGTATTCTCAGCAGCGACCCCTAGATCACTAAATGGACCCTCATTTTACACTTTACCCAAAGTAGTGTTGTTTCTGTTGTATCACATATTTAATTGGGTTTTGTTGTCTGAAATCTTATTTGTGGATGTATCAAATGCCTTTGCAAGAATAGATTTTGGTTGTTAAGTATATTCGATATGTTATTTTTCATTTTTAAGAATAGTTGTTTGATTTCTTTGACCAATTTCCAACTTAGATTGAAGCTAAAACATTTCTTCTGTTGTAGTATGAGCATGAAAGTTCAGTCTAGGTGTGATATTTCATTTTTTATTTTGTCCACTATTAAGATATTGTAGGTTTGGTTGCTCAATTCCATCCTTGTTATGCCCCTAATTAGGGTAGCTTGTAGCTCCTTCAAATTTTTCCATCAGATTTTATGGTGTCAATGTGTATTTCTAATTTGTCTAAGGAATGACAAATTTACTTTGTTAATCATAAATAAGATTGCAATTCTTTCGGTAGAATTAGAGGCAGAGTGCTAGATCCATCAGCAGGGTCTTAATATTCAAAATTTGTCACTTGCTGGCTTCTTTCTTGAATACTTGTACGTGATGTTGGGTATTGCCTTAATTACTTTTTAGGACTGCTGATGGTCTAGTACCCGTTCTCCTTGTTCTTGGTGTTTAAAAATCTTATGTTATGGTAGTTAATTATCTAAGCATTTGGGGCTATTTCTAATCTTCAAGCTTTGCTGTCTTGCAGATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTT</genome_strand>
        <mrna_strand>AGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAG........................................................................................................GATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219325" ref_strand="+" ref_description="SGN-E219325 [cLEL-11-M15](-)">
      <seq>caggggattcctcacctgagaccagctgagtacaagaggtccaggttgtctaggaacaggaggnctgtgaaccgtgcctatggcggagtattgtctggaggagcagttagggagaggatcgtccgtgctttcttggtggaagagcaaaaaattgttaagaaggttttgaagatccaaaaagccaaagaaaagttggcagctaagagttaagcagagagtttagaggaactttctttttatgttttgctgaaattttgacattcaagtgtttactagttttgtgctacaaattgaccttattgctacaacaatttacggcagttttttgctttattttgcaacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4568" stop="5610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4655" g_stop="4661" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="0.714"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4662" i_stop="4868" i_length="207">
            <donor d_prob="0.278" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4869" g_stop="4978" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="116" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4979" i_stop="5082" i_length="104">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5083" g_stop="5304" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="338" r_length="222" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="340" polyA_stop="358"/>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E219325" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4655" e_stop="4661"/>
          <exon e_start="4869" e_stop="4978"/>
          <exon e_start="5083" e_stop="5304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAGGGTCTTAATATTCAAAATTTGTCACTTGCTGGCTTCTTTCTTGAATACTTGTACGTGATGTTGGGTATTGCCTTAATTACTTTTTAGGACTGCTGATGGTCTAGTACCCGTTCTCCTTGTTCTTGGTGTTTAAAAATCTTATGTTATGGTAGTTAATTATCTAAGCATTTGGGGCTATTTCTAATCTTCAAGCTTTGCTGTCTTGCAGATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTTATTTTG</genome_strand>
        <mrna_strand>CAG-GGG...............................................................................................................................................................................................................ATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGNCTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAG........................................................................................................GATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTTATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219502" ref_strand="+" ref_description="SGN-E219502 [cLEL-11-O3](-)">
      <seq>gagtacaagaggtccaggttgtctaggaacaggaggactgtgaaccgtgcctatgccggagtattgtctggaggagcagttagggagaggatcgtccgtgctttcttggtggaagagcaaaaaattgttaagaaggttttgaagatccaaaaagccaaagaaaagttggcagctaagagttaagcagagagtttagaggaactttctttttatgttttgctgaaattttgacattcaagtgtttactagttttgtgctacaaattgaccttattgctgcaacaatttgcggcaggtttttgcccccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4590" stop="5595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4890" g_stop="4978" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4979" i_stop="5082" i_length="104">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5083" g_stop="5293" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="300" r_length="211" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="307" polyA_stop="324"/>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E219502" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4890" e_stop="4978"/>
          <exon e_start="5083" e_stop="5293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTT</genome_strand>
        <mrna_strand>GAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGCCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAG........................................................................................................GATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTGCAACAATTTGCGGCAGGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217481" ref_strand="+" ref_description="SGN-E217481 [cLEL-21-E5](-)">
      <seq>aacaggaggactgtgaaccgtgcctatggcggagtattgtctggaggagcagttagggagaggtttgttctcttaaatgcttgttggcttgtccatgtctgtcatatgtcaccttcattgccttctgtatcgaacttttaataatcgagttatgcttggtttgcaggatcgtccgtgctttcttggtggaagagcaaaaaattgttaagaaggttttgaagatccaaaaagccaaagaaaagttggcagctaagagttaagcagagagtttagaggaactttctttttatgttttgctgaaattttgacattcaagtgtttactagttttgtgctacaaattgaccttattgctacaacaatttacggcagttttttgcttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4617" stop="5599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4917" g_stop="5298" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="383" polyA_stop="395"/>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E217481" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4917" e_stop="5298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTT</genome_strand>
        <mrna_strand>AACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224240" ref_strand="+" ref_description="SGN-E224240 [cLEL-19-L3](-)">
      <seq>agcagttagggagaggtttgttctcttaaatgcttgttggcttgtccatgtctgtcatatgtcaccttcattgccttctgtatcgaacttttaataatcgagttatgcttggtttgcaggatcgtccgtgctttcttggtggaagagcaaaaaattgttaagaaggttttgaagatccaaaaagccaaagaaaagttggcagctaagagttaagcagagagtttagaggaactttctttttatgttttgctgaaattttgacattcaagtgtttactagttttgtgctacaaattgaccttattgctacaacaattttcggcagttttaaaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4664" stop="5591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4964" g_stop="5291" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="329" polyA_stop="348"/>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E224240" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4964" e_stop="5291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTT</genome_strand>
        <mrna_strand>AGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTTCGGCAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224136" ref_strand="+" ref_description="SGN-E224136 [cLEL-19-L3](-)">
      <seq>ggtttgttctcttaaatgcttgttggcttgcccatgtctgtcatatgtcaccttcattgccttctgtatcgaacttttaataatcgagttatgcttggtttgcaggatcgtccgtgctttcttggtggaagagcaaaaaattgttaagaaggttttgaagatccaaaaagccaaagaaaagttggcagctaagagttaagcagagagtttagaggaactttctttttatgttttgctgaaattttgacattcaagtgtttactagttttgtgctacaaattgaccttattgctacaacaatttacggcagttttttgcttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4678" stop="5599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4978" g_stop="5298" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="322" polyA_stop="333"/>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E224136" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4978" e_stop="5298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTT</genome_strand>
        <mrna_strand>GGTTTGTTCTCTTAAATGCTTGTTGGCTTGCCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223427" ref_strand="+" ref_description="SGN-E223427 [cLEL-14-E16](-)">
      <seq>cgagctttcttggtggaagagcaaaatattgttaagaaggttttgaagatccaaaaaaccaaagaaaagttggcagctaagagttaagcagagagtttaaaggaactttctttttatgttttgctgaaattttgacattcaagtgttaactagttttgtgctacaaattgtccttattgctacaacaatttacggcagttttttgctttaccctggaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4790" stop="5599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5090" g_stop="5298" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="217" polyA_stop="232"/>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E223427" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>209</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5090" e_stop="5298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTT</genome_strand>
        <mrna_strand>CGAGCTTTCTTGGTGGAAGAGCAAAATATTGTTAAGAAGGTTTTGAAGATCCAAAAAACCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAAAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTAACTAGTTTTGTGCTACAAATTGTCCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219521" ref_strand="+" ref_description="SGN-E219521 [cLEL-11-B20](-)">
      <seq>ggcacgaggttttgaagatccaaaaagccaaagaaaagttggcagctaagagttaagcagagagtttagaggaactttctttttatgttttgctgaaattttgacattcaagtgtttactagttttgtgctacaaattgaccttattgctaccccaatttacggcagttttttgcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4823" stop="5599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5120" g_stop="5298" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="179" polyA_stop="195"/>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E219521" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>179</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5120" e_stop="5298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTT</genome_strand>
        <mrna_strand>GGCACG-AGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACCCCAATTTACGGCAGTTTTTTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335258" ref_strand="+" ref_description="SGN-E335258 [cTOE-1-E10]">
      <seq>aacattgctgcttctctgatatccagttgatcatggcaaccaaaaggaaatccaggggataacagaaataaaagctttttaccatcattacttgtcatagctgcactttgttgtttcttctatgttcttggagtgtggaaaagaagtggttttgggaagggagacagcatagcacttgaaataacaaagaaggcagaggactgcggtatccttcctaatttggagtatgaaactcaccatgggaatcaaagcacctcgttcgatgatcccaagcaagatgtcaaggagattgagccatgtggcgagcaatacattgattatacaccatgtcatgatcaaatgcgagcaatgacatttcctagagaaaatatgaactatagggagagacattgtcctccagatgaagagaagctgcattgtcttgttccagctccaaaaggatatgtcactcctttttcatggccaaagagtcgtgactatgtaccttttgcaaatgcaccacataagagcttaacagtcgagaaggcagtgcaaaattgggttcaatatgaaggagatgtatttagatttccaggtggtggaacacagttccccaatggggcagatgcatatattgatcaacttgcttctgttataccgatggaaaatggtactgtaagaactgcattggataccggatgtggggttgcaagttggggtgcataccttttcaaaaagaatgttctaaccatgtccttcgcacccagagactcgcatgaagctcaagttcaatttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6401" stop="8238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6701" g_stop="6725" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6726" i_stop="6977" i_length="252">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6978" g_stop="7635" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="684" r_length="659" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7636" i_stop="7844" i_length="209">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7845" g_stop="7938" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="778" r_length="94" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E335258" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6701" e_stop="6725"/>
          <exon e_start="6978" e_stop="7635"/>
          <exon e_start="7845" e_stop="7938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTGCTGCTTCTCTGATATCCAGTAAGGTTTCTTTTTTTCATTTAAATTTGGATCACACGAAATGTTTTAGTACATCAGACTACCTTGTGTTTCATGTCTTCCTACTAGTTTTTCAAGATCAATTTGTGTATTATTAATTTTCAAAACCTTGAGTTATATGCTTTTGTTTGATGTGATTATTGTTTTAAGAGGTAAGTAACACATTTATTTCCTTTTGAGTATAGTTGATTGAGAATCATTTTATATGCTTCATCAAAGTCGTTTGAATTCCAGGTTGATCATGGCAA-CAAAAGGAAATCCAGGGGATAACAGAAATAAAAGCTTTTTACCATCATTACTTGTCATAGCTGCACTTTGTTGTTTCTTCTATGTTCTTGGAGTGTGGAAAAGAAGTGGTTTTGGGAAGGGAGACAGCATAGCACTTGAAATAACAAAGAAGGCAGAGGACTGCGGTATCCTTCCTAATTTGGAGTATGAAACTCACCATGGGAATCAAAGCACCTCGTTCGATGATCCCAAGCAAGATGTCAAGGAGATTGAGCCATGTGGCGAGCAATACATTGATTATACACCATGTCATGATCAAATGCGAGCAATGACATTTCCTAGAGAAAATATGAACTATAGGGAGAGACATTGTCCTCCAGATGAAGAGAAGCTGCATTGTCTTGTTCCAGCTCCAAAAGGATATGTCACTCCTTTTTCATGGCCAAAGAGTCGTGACTATGTACCTTTTGCAAATGCACCACATAAGAGCTTAACAGTCGAGAAGGCAGTGCAAAATTGGGTTCAATATGAAGGAGATGTATTTAGATTTCCAGGTGGTGGAACACAGTTCCCCAATGGGGCAGATGCATATATTGATCAACTTGCTTCTGTTATACCGATGGAAAATGGTACTGTAAGAACTGCATTGGATACCGGATGTGGGGTGAGTCAAAGCTTTCTACAATATTCTCCATTGCTCTATCTGTCTAGTGTTTTACTCCTTTTGAATGAAAACCTTACTAGTAGTTGGAGTTCATGACGGTGAATGGTACTTTCTAAAATTTTGAATCAACTCCTTGGTTCTCCAAAGTGGTGTTTGACTGCGTACTAGTTTTAAATTTGAATGTTTGTGTATGATTTGTGATATCATAGGTTGCAAGTTGGGGTGCATACCTTTTCAAGAAGAATGTTCTAACCATGTCCTTCGCACCCAGAGACTCGCATGAAGCTCAAGTTCAATTTGCTT</genome_strand>
        <mrna_strand>AACATTGCTGCTTCTCTGATATCCA............................................................................................................................................................................................................................................................GTTGATCATGGCAACCAAAAGGAAATCCAGGGGATAACAGAAATAAAAGCTTTTTACCATCATTACTTGTCATAGCTGCACTTTGTTGTTTCTTCTATGTTCTTGGAGTGTGGAAAAGAAGTGGTTTTGGGAAGGGAGACAGCATAGCACTTGAAATAACAAAGAAGGCAGAGGACTGCGGTATCCTTCCTAATTTGGAGTATGAAACTCACCATGGGAATCAAAGCACCTCGTTCGATGATCCCAAGCAAGATGTCAAGGAGATTGAGCCATGTGGCGAGCAATACATTGATTATACACCATGTCATGATCAAATGCGAGCAATGACATTTCCTAGAGAAAATATGAACTATAGGGAGAGACATTGTCCTCCAGATGAAGAGAAGCTGCATTGTCTTGTTCCAGCTCCAAAAGGATATGTCACTCCTTTTTCATGGCCAAAGAGTCGTGACTATGTACCTTTTGCAAATGCACCACATAAGAGCTTAACAGTCGAGAAGGCAGTGCAAAATTGGGTTCAATATGAAGGAGATGTATTTAGATTTCCAGGTGGTGGAACACAGTTCCCCAATGGGGCAGATGCATATATTGATCAACTTGCTTCTGTTATACCGATGGAAAATGGTACTGTAAGAACTGCATTGGATACCGGATGTGGG.................................................................................................................................................................................................................GTTGCAAGTTGGGGTGCATACCTTTTCAAAAAGAATGTTCTAACCATGTCCTTCGCACCCAGAGACTCGCATGAAGCTCAAGTTCAATTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731201" ref_strand="+" ref_description="SGN-E731201 [LA26BG06]">
      <seq>aggatagttttcacaagtctataaactccttcctattttataggttatgagctttctaattatctttcgtctcttgtttgttggtaaactgtttttttctgagtttcgttctgtcccttcctgtctcaaaggttatcatataactcttttacactagtaaagatattaacccataaagctcctcccagaaatcgttgcttctggatcaaactctcttcaaaattttcatcaaacaacagaaacctgaagcatttcgtctccatggaagccaataataatgtaaccagccttcgcgtagcatcattttcttgttaccttagcaaccctgacgatcagagttttttacataaactaggaggctcttatgaagagccttattctgctgttgttttaccacctgagaaccccttttctgtaagagctactaaggcacctactagtaaaccatcctcgaataaccctcgagacagccttgccaatcttcgcgttgagtctttctcttcttatctcaagactgatgaagacaactttgcatttaagacctcaggtgcttctcctgttcaagatcctactattgcatttgttttttctcagcaaactttggttagcactcagaaacaccaagaaagaaccaagttgaaagatggggaactaagcatatttggagctgacaagtatttcaacaagaaactggaatatggagctgccgctacatctgtggtgaagtatggcgggcagatgaacaacgggatggtggatcttccccacccgaaaccaagttcccagacaggaactccaagcatccattcagaagcaagcagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11938" stop="13358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12235" g_stop="13058" g_length="824"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="824" r_length="824" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E731201" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12235" e_stop="13058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATAGTTTTCACAAGTCTATAAACTCCTTCCTATTTTATAGGTTATGAGCTTTCTAATTATCTTTCGTCTCTTGTTTGTTGGTAAACTGTTTTTTTCTGAGTTTCGTTCTGTCCCTTCCTGTCTCAAAGGTTATCATATAACTCTTTTACACTAGTAAAGATATTAACCCATAAAGCTCCTCCCAGAAATCGTTGCTTCTGGATCAAACTCTCTTCAAAATTTTCATCAAACAACAGAAACCTGAAGCATTTCGTCTCCATGGAAGCCAATAATAATGTAACCAGCCTTCGCGTAGCATCATTTTCTTGTTACCTTAGCAACCCTGACGATCAGAGTTTTTTACATAAACTAGGAGGCTCTTATGAAGAGCCTTATTCTGCTGTTGTTTTACCACCTGAGAACCCCTTTTCTGTAAGAGCTACTAAGGCACCTACTAGTAAACCATCCTCGAATAACCCTCGAGACAGCCTTGCCAATCTTCGCGTTGAGTCTTTCTCTTCTTATCTCAAGACTGATGAAGACAACTTTGCATTTAAGACCTCAGGTGCTTCTCCTGTTCAAGATCCTACTATTGCATTTGTTTTTTCTCAGCAAACTTTGGTTAGCACTCAGAAACACCAAGAAAGAACCAAGTTGAAAGATGGGGAACTAAGCATATTTGGAGCTGACAAGTATTTCAACAAGAAACTGGAATATGGAGCTGCCGCTACATCTGTGGTGAAGTATGGCGGGCAGATGAACAACGGGATGGTGGATCTTCCCCACCCGAAACCAAGTTCCCAGACAGGAACTCCAAGCATCCATTCAGAAGCAAGCAGTTT</genome_strand>
        <mrna_strand>AGGATAGTTTTCACAAGTCTATAAACTCCTTCCTATTTTATAGGTTATGAGCTTTCTAATTATCTTTCGTCTCTTGTTTGTTGGTAAACTGTTTTTTTCTGAGTTTCGTTCTGTCCCTTCCTGTCTCAAAGGTTATCATATAACTCTTTTACACTAGTAAAGATATTAACCCATAAAGCTCCTCCCAGAAATCGTTGCTTCTGGATCAAACTCTCTTCAAAATTTTCATCAAACAACAGAAACCTGAAGCATTTCGTCTCCATGGAAGCCAATAATAATGTAACCAGCCTTCGCGTAGCATCATTTTCTTGTTACCTTAGCAACCCTGACGATCAGAGTTTTTTACATAAACTAGGAGGCTCTTATGAAGAGCCTTATTCTGCTGTTGTTTTACCACCTGAGAACCCCTTTTCTGTAAGAGCTACTAAGGCACCTACTAGTAAACCATCCTCGAATAACCCTCGAGACAGCCTTGCCAATCTTCGCGTTGAGTCTTTCTCTTCTTATCTCAAGACTGATGAAGACAACTTTGCATTTAAGACCTCAGGTGCTTCTCCTGTTCAAGATCCTACTATTGCATTTGTTTTTTCTCAGCAAACTTTGGTTAGCACTCAGAAACACCAAGAAAGAACCAAGTTGAAAGATGGGGAACTAAGCATATTTGGAGCTGACAAGTATTTCAACAAGAAACTGGAATATGGAGCTGCCGCTACATCTGTGGTGAAGTATGGCGGGCAGATGAACAACGGGATGGTGGATCTTCCCCACCCGAAACCAAGTTCCCAGACAGGAACTCCAAGCATCCATTCAGAAGCAAGCAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702106" ref_strand="+" ref_description="SGN-E702106 [FA17DC09]">
      <seq>gtttaagcgaaatcaagaaaatcagttaagcagctctgtaactcaggtgggaaaaaggcaaaaaataatggtggttgacaaagggaagaagcagaaagtggaagaggaaagctacattgatgaaaagctcattttttccattgaaaaattgcaagaaatacaagacgaccttgacaagatcaatgagaaagcaagtgaggaagtgttggaaatagaacagaagtacaacaagatccgcaagcctgtttatgataagcggaatgatatcattaactctatttctgacttctggttgactgcttttttgagtcatcctgttcttggtgaccttctaactgaagaggaccaaaagattttcaaattcttaagttctattgaagtggaagactcgaaagatgtgaaatttggttactcaatcacgtttaactttaagcccaatcctttctttgaaaattcaaagctctcaaagacctataccttccttgaagatggacctacaaaaatcacagctacaccaataaaatggaaagaaggcaaaggcattcctaatggcgttgctcaggagaagaaaggaaacaagcgatcccatgctgaagagagcttcttcacctggttcagtgaagtcaataaaaaagatgatagcgatgatgatgaaaatgaggttctggagattcaggatgaggttgctgaaataatcaaggatgacttgtggccaaaccctttaacttattttaccaatgaacctgatgaagaagattttgagggtgatgaaggtggtgatgagggggaggactctgaagatgaaggtgatgaggaggaagaggaagacgacgaagatgaagatgacaaatgaactgttaatggacctcatatttgatttgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17667" stop="23267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17967" g_stop="18144" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18145" i_stop="19196" i_length="1052">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19197" g_stop="19319" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="301" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19320" i_stop="19404" i_length="85">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19405" g_stop="19455" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="352" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19456" i_stop="19632" i_length="177">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19633" g_stop="19704" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="424" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19705" i_stop="19804" i_length="100">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19805" g_stop="19918" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="538" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19919" i_stop="20006" i_length="88">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20007" g_stop="20068" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="600" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20069" i_stop="20799" i_length="731">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20800" g_stop="20881" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="682" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20882" i_stop="21021" i_length="140">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="21022" g_stop="21078" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="739" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="21079" i_stop="21179" i_length="101">
            <donor d_prob="0.627" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="21180" g_stop="21224" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="784" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="21225" i_stop="22866" i_length="1642">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="22867" g_stop="22967" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="785" r_stop="885" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E702106" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17967" e_stop="18144"/>
          <exon e_start="19197" e_stop="19319"/>
          <exon e_start="19405" e_stop="19455"/>
          <exon e_start="19633" e_stop="19704"/>
          <exon e_start="19805" e_stop="19918"/>
          <exon e_start="20007" e_stop="20068"/>
          <exon e_start="20800" e_stop="20881"/>
          <exon e_start="21022" e_stop="21078"/>
          <exon e_start="21180" e_stop="21224"/>
          <exon e_start="22867" e_stop="22967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAAGCGAAATCAAGAAAATCAGTTAAGCAGCTCTGTAACTCAGGTGGGAAAAAGGCAAAAAATAATGGTGGTTGACAAAGGGAAGAAGCAGAAAGTGGAAGAGGAAAGCTACATTGATGAAAAGCTCATTTTTTCCATTGAAAAATTGCAAGAAATACAAGACGACCTTGACAAGGTAAATTCTATCTTCCTTGCGGTCAAACAATAAATCATGGAAATATTTGAGTTCTTGTTATTCCAATATTTGGGTAATTTTTCATCTACAAGGATTTTGTCTAAAACTGGAAATATCTTCAAGTAAAGATTCAATTTTTATGGTAAAGAATTAGGTATTAGTTAATTATTGCTTGGAGGCGGATCCAGGATTTGAATTTATGGGGGTTTCCCAGCGATCTCAATAAATTAATACTATAAGGTATCTAATCGGATTCGAGCAAATTAGGGGTCGGTTTAGATTTAGCAGCGTCAATTTCTGCCAGTGAACCAAGCACTTGCTTTGTTATTGGTTCCCAACAAATATTTTTTAGTGTCTGGTCAAAGGTCACTGGGTTTGCGGAAGCCCCACCTACCCCTGCATCCATCCCTGTTATCGCTAGGTAGTGCGTTGAACAGTTAATCTCAATGCAGAGCAGGTTGTTCGAGTGGAAAGTCTCTTTCTTTTCTTCTTTGGGTGGCTGGGTTTGGAGTTCTTGAAATATGTTGTTTATAAAATGTGCCAGAATATTGCTGATGGATATTGAAGGTCGGTGTAGCTGACTCTATGATCGACTAATCATTCTATGATGAAAATAGAATAACTTCCAATTTGGTGTTATTTTTGGGACATAGTTGTTCGGATGATACTCTATGTCTTCAATTTAATTTGGCACTCCTTAATTTTCCCATTTTCCATTGTTAAGATTAAGCTTTTAATGCATAGACATCCTTATATGTATTCTAACATTGCTCCAAAACTTGTCTGGTTTCTCCATGTATTTGACAATGAGAATATGGTTCCTTGTTTTAAGTGTGGACATAAACTGGGTATCACTGGCAGTGTTGTAGTGTTCGAAAATTTTCATCTGTACACTGAAAGCTTAATCATTTGGCATACTATCAACTTTTACTGGTTCACAATAACTAGCTTGGATCAATTTGCTAGAAGTTTTTCTTCTGCTGTTTAACTGTAAGATAAGATGGGATGCCCTTGGTTTTACATGTTAACCGATATATCAATTTTGCTGGCAGATCAATGAGAAAGCAAGTGAGGAAGTGTTGGAAATAGAACAGAAGTACAACAAGATCCGCAAGCCTGTTTATGATAAGCGGAATGATATCATTAACTCTATTTCTGACTTCTGGTTGACTGCTGTTAGTGGCCCCATCCTGATCCTTTGTTCTCTCTATATTCTGGAATTCTGAAGATTATTTTACACTATATCTCATTTGCTTGCAGTTTTTGAGTCATCCTGTTCTTGGTGACCTTCTAACTGAAGAGGACCAAAAGGTTTGATTCTAATTTGTTGCATATAAACTTCTGAAGCAAACCATTACTGTTTCTCTAAGCAAACCACCTGCTCAATTAGCAAAGAGTCTCTCATCTATACCCTGTCTAAGTGCAGTTTGAATGACTGCTTTCGTTCTGATCTGAAACTCATAATCTTACTGCCTTCTTTCTTGCTAGATTTTCAAATTCTTAAGTTCTATTGAAGTGGAAGACTCGAAAGATGTGAAATTTGGTTACTCAATCACGTTTGTGAGTTCATTACTCTCTTGATGATGAAATTAATTTAGTACATTAGACTCTTGTGTTTGCTGGGGTGTAGAATGCTAATGACTCCTCGTCTTCCTCACAGAACTTTAAGCCCAATCCTTTCTTTGAAAATTCAAAGCTCTCAAAGACCTATACCTTCCTTGAAGATGGACCTACAAAAATCACAGCTACACCAATAAAATGGAAAGAAGGCAAAGTGAGTCGACAATTTCCGACTTGACAAATGTTACACATCTTTATCTTATCCGTTTCCTCTCACTATATATGTTATTTGGCTTTTGAAGGGCATTCCTAATGGCGTTGCTCAGGAGAAGAAAGGAAACAAGCGATCCCATGCTGAAGAGAGGTCAGCTTACAGATCTAGCATTTCTTAGGACTTCTAATTTTTTGCAAGGCTATTAATTGTTTATAACAAGCCTGTCAACTTGCAACTGATATATTGTTGGAACCTTGGTTTGTACAAGAGAGTAGGTTTGCTCACACATTAAGCCTGGTTATGATCTCTACCTTAGGAACTCAGATTCTGGTACAGCACATTTACTTACTAAATCTCACCTATAACTGGCTCATTTTAGTTTGATCTTTGAAATAACATACCAACCCCTAATTGACTGCTGCAATGTGTTTACTTTACTAAGAGTCGAGTGCGGAATATATTGGTCCATCCGTCACAAAAAGAAATGGCAGGATCAAAGTTAATGATTCAAATCACTCATGATTTCTGACAAAAAGAAATGACAGAATTACGTAAGAGCATAATAACTTTTTATAATATAAATGTTTTGGAAAAATTCTTTCTTGAGAAAACCTATTTGAGTTCCCAAATAGTAATAGTGCAAAATATGGCAGTTAATGCAGCCTTGTTGAAACTATTTTACAACTGTGTGCACTCACTAAGTTTTTGGTCTACAACATTCTGTGACTATCCTCATAAAGTCACAAATACTTGGTACTAAGTTGGTACAGAGACTGATACATGCTCGATGCTTTGTCCTCTGCACTCTTAATTTAAGCTGTACTTCTAAGTTTCATGTTTATGGTCATCCTATCTCAGTTGCTTTCCACTTGTTTTTACAGCTTCTTCACCTGGTTCAGTGAAGTCAATAAAAAAGATGATAGCGATGATGATGAAAATGAGGTTCTGGAGATTCAGGATGAGGTAAAATCTAATTCTTCGGCAATTAATTAAGATTTTTATCTCCCTTCTTTTTGGATGGGAGAAGGGGAGCTTATTTAGGTGTTTTGGTGCATAAAGCTGCTTTTATTTTCAAACTTATACCTTGGTTTTCTGGTTTCCAGGTTGCTGAAATAATCAAGGATGACTTGTGGCCAAACCCTTTAACTTATTTTACCAATGTTAGTTCCATACTGCATCTCTTGTTTCCTTGATCTGTTAATCAAGACTTAGTCGTGCACTTTTAACTAGATAACATTATCTGAGATTTACTAAACCACAGGAACCTGATGAAGAAGATTTTGAGGGTGATGAAGGTGGTGATGAGGTAAAGCAACATTCTTGCTAATAGTTGTCATAACTTGTGCACATCATTTGCTAAACTAAGTCATACTTAGTCATCTGTGGTTCTAATATGTCCTCCTTTTGGGTTTTACATTTATTTCTTTCCTAGGCCCACGTGGCATGAGGGTGAAAGGGCACTTTTGGAAAAAGTTTCTAAATTCTAAGTGCGGCCTTAGTAACTTTAGTTGTAGAATTTAAGTGTTTGACCCTGCTTGGTTGTGGCCTTTGTTGATTTTACTGGCGTTTAAGTCGATTTGTTGTCATTGTGAGTTGAGTTGCTTTTGTTGACTTCAGAATTACATAGTAGCTATGTAGTACAATGGTTTTCTTAAATACTAGGGATAATTTTGTTCCTACCCCCCCCCCCCCCTATCACATCAAGTAGAAAGAGTCTACTCAAGTTTGTAGGTAGTTTCTTCAAGAACTTTCCTTCGTTTACGTATGTCTAAAAGAAGCACATACTGTCAGCATTTGGAAGTTAACAGTTTCAAAGGTCCTTCCAAGTGACTGATATGATTTTACTAAAATCATATAGCTGCAACGCTGTAATATCCTATAGAACATAGAACCTCCTTCATAACTTTCTGCAAGAAATATAGTTCTTTGTGTTTGTGTTGCTTCAGTTTTTAGGTGTTTATCCTACATTTCCATCTTAGTTTTCATGGAAACTTTTTGCTGCTGTATTGTGGGTTAAACCAAAACTTCGTCTACCTTGCATTTTGATGAGAAGTTGGGTGGATATCAAGTTGGGTGTAATAGAAGGCGGAGTTGAGACATGTGAGGGAGAAAAGGGGAAGGTATGGTGAAGGAAGTCCTAGATTGAAGCCTCAAAAAGATGCCATCTTCAAAAGCATCATAAAGGGGGCATAGGGGATTCTTCTATACTTCTAAATACATTTGTGTCAGTACCTTGTTGGTGCTATTCTATGAGAACACGTTAACTTAGTATTAAACAAATGCATAATATAAGGAAGAGGATGAAACCATAGCTTTTGGTTTTATCTTCCAGGATGGTATTGGTTGGGTACTCTGCCTTTCAGAAAATCAAAGTTATCTTTGTTTTTGAAAACAATAAAGTATATATTCTAACAAAGAAATTGTGCTTATTTTCTTACTTTCATCCCTTGGGCCTAGGGAGAGAAGTCTTTTTGGTGGAACGACACTTTTTTGTTTAGGATAAGAGGAAGGAGTGGGTCTTACTGCTGTTTCACTTTCCTAGCCAAATGGAGGTAAAAGTGGGACATGTATGACTCCATCAAGAGTTGGGATCTTCACCGCAGGAAAGAGGAAAGCCTGCTTTGGTTTTAAACTTCGATTTCCAATTCTACCAAACAATATGAGGAGGAAGAAATGCAATTACGTGCAAGTGCCCCTATCTCTTCTTACCTTTCCTCAACTTAAATATTTGGCATTTGACTTGTATTCTGGATACAATGCAGAGATATTTTATGGTATAGAACTTGTTAATTGGGTCTTTTACTGCATGCTCATCATTATTTTTGGAAGATGATAGTACAGTTCTTGATTTTTTAAATGATAATGTCAAAATAAATTGTGTATATGATGCAAAATGAAAGATGTTCTGTTCTGTCTTTGGTTGATTTGATTTGAATTTCTATATGCAGGGGGAGGACTCTGAAGATGAAGGTGATGAGGAGGAAGAGGAAGACGACGAAGATGAAGATGACAAATGAACTGTTAATGGACCTCATATTTGATTTGATTT</genome_strand>
        <mrna_strand>GTTTAAGCGAAATCAAGAAAATCAGTTAAGCAGCTCTGTAACTCAGGTGGGAAAAAGGCAAAAAATAATGGTGGTTGACAAAGGGAAGAAGCAGAAAGTGGAAGAGGAAAGCTACATTGATGAAAAGCTCATTTTTTCCATTGAAAAATTGCAAGAAATACAAGACGACCTTGACAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATGAGAAAGCAAGTGAGGAAGTGTTGGAAATAGAACAGAAGTACAACAAGATCCGCAAGCCTGTTTATGATAAGCGGAATGATATCATTAACTCTATTTCTGACTTCTGGTTGACTGCT.....................................................................................TTTTTGAGTCATCCTGTTCTTGGTGACCTTCTAACTGAAGAGGACCAAAAG.................................................................................................................................................................................ATTTTCAAATTCTTAAGTTCTATTGAAGTGGAAGACTCGAAAGATGTGAAATTTGGTTACTCAATCACGTTT....................................................................................................AACTTTAAGCCCAATCCTTTCTTTGAAAATTCAAAGCTCTCAAAGACCTATACCTTCCTTGAAGATGGACCTACAAAAATCACAGCTACACCAATAAAATGGAAAGAAGGCAAA........................................................................................GGCATTCCTAATGGCGTTGCTCAGGAGAAGAAAGGAAACAAGCGATCCCATGCTGAAGAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTCACCTGGTTCAGTGAAGTCAATAAAAAAGATGATAGCGATGATGATGAAAATGAGGTTCTGGAGATTCAGGATGAG............................................................................................................................................GTTGCTGAAATAATCAAGGATGACTTGTGGCCAAACCCTTTAACTTATTTTACCAAT.....................................................................................................GAACCTGATGAAGAAGATTTTGAGGGTGATGAAGGTGGTGATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAGGACTCTGAAGATGAAGGTGATGAGGAGGAAGAGGAAGACGACGAAGATGAAGATGACAAATGAACTGTTAATGGACCTCATATTTGATTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746808" ref_strand="+" ref_description="SGN-E746808 [GI|47104474]">
      <seq>gcgaaatcaagaaaatcagttaagcagctctgtaactcaggtgggaaaaaggcaaaaaataatggtggttgacaaagggaagaagcagaaagtggaagaggaaagctacattgatgaaaagctcattttttccattgaaaaattgcaagaaatacaagacgaccttgacaagatcaatgagaaagcaagtgaggaagtgttggaaatagaacagaagtacaacaagatccgcaagcctgtttatgataagcggaatgatatcattaactctatttctgacttctggttgactgcttttttgagtcatcctgttcttggtgaccttctaactgaagaggaccaaaagattttcaaattcttaagttctattgaagtggaagactcgaaagatgtgaaatttggttactcaatcacgtttaactttaagcccaatcctttctttgaaaattcaaagctctcaaagacctataccttccttgaagatggacctacaaaaatcacagctacaccaataaaatggaaagaaggcaaaggcattcctaatggcgttgctcaggagaagaaaggaaacaagcgatcccatgctgaagagagcttcttcacctggttcagtgaagtcaataaaaaagatgatagcgatgatgatgaaaatgaggttctggagattcaggatgaggttgctgaaataatcaaggatgacttgtggccaaaccctttaacttattttaccaatgaacctgatgaagaagattttgagggtgatgaaggtggtgatgagggggaggactctgaagatgaaggtgatgaggaggaagaggaagacgacgaagatgaagatgacaaatgaactgttaatggacctcatatttgatttgatttctcttcttcaatgtttcaattatcatagttggtatctgtaaagaagcttaatattgcagataaaatcgaattatatatagtggtgactgctttttttctaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17673" stop="23376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17973" g_stop="18144" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18145" i_stop="19196" i_length="1052">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19197" g_stop="19319" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="295" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19320" i_stop="19404" i_length="85">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19405" g_stop="19455" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="346" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19456" i_stop="19632" i_length="177">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19633" g_stop="19704" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="418" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19705" i_stop="19804" i_length="100">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19805" g_stop="19918" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="532" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19919" i_stop="20006" i_length="88">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20007" g_stop="20068" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="594" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20069" i_stop="20799" i_length="731">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20800" g_stop="20881" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="676" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20882" i_stop="21021" i_length="140">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="21022" g_stop="21078" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="733" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="21079" i_stop="21179" i_length="101">
            <donor d_prob="0.627" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="21180" g_stop="21224" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="734" r_stop="778" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="21225" i_stop="22866" i_length="1642">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="22867" g_stop="23071" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="983" r_length="205" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="984" polyA_stop="1003"/>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E746808" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>983</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17973" e_stop="18144"/>
          <exon e_start="19197" e_stop="19319"/>
          <exon e_start="19405" e_stop="19455"/>
          <exon e_start="19633" e_stop="19704"/>
          <exon e_start="19805" e_stop="19918"/>
          <exon e_start="20007" e_stop="20068"/>
          <exon e_start="20800" e_stop="20881"/>
          <exon e_start="21022" e_stop="21078"/>
          <exon e_start="21180" e_stop="21224"/>
          <exon e_start="22867" e_stop="23071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAAATCAAGAAAATCAGTTAAGCAGCTCTGTAACTCAGGTGGGAAAAAGGCAAAAAATAATGGTGGTTGACAAAGGGAAGAAGCAGAAAGTGGAAGAGGAAAGCTACATTGATGAAAAGCTCATTTTTTCCATTGAAAAATTGCAAGAAATACAAGACGACCTTGACAAGGTAAATTCTATCTTCCTTGCGGTCAAACAATAAATCATGGAAATATTTGAGTTCTTGTTATTCCAATATTTGGGTAATTTTTCATCTACAAGGATTTTGTCTAAAACTGGAAATATCTTCAAGTAAAGATTCAATTTTTATGGTAAAGAATTAGGTATTAGTTAATTATTGCTTGGAGGCGGATCCAGGATTTGAATTTATGGGGGTTTCCCAGCGATCTCAATAAATTAATACTATAAGGTATCTAATCGGATTCGAGCAAATTAGGGGTCGGTTTAGATTTAGCAGCGTCAATTTCTGCCAGTGAACCAAGCACTTGCTTTGTTATTGGTTCCCAACAAATATTTTTTAGTGTCTGGTCAAAGGTCACTGGGTTTGCGGAAGCCCCACCTACCCCTGCATCCATCCCTGTTATCGCTAGGTAGTGCGTTGAACAGTTAATCTCAATGCAGAGCAGGTTGTTCGAGTGGAAAGTCTCTTTCTTTTCTTCTTTGGGTGGCTGGGTTTGGAGTTCTTGAAATATGTTGTTTATAAAATGTGCCAGAATATTGCTGATGGATATTGAAGGTCGGTGTAGCTGACTCTATGATCGACTAATCATTCTATGATGAAAATAGAATAACTTCCAATTTGGTGTTATTTTTGGGACATAGTTGTTCGGATGATACTCTATGTCTTCAATTTAATTTGGCACTCCTTAATTTTCCCATTTTCCATTGTTAAGATTAAGCTTTTAATGCATAGACATCCTTATATGTATTCTAACATTGCTCCAAAACTTGTCTGGTTTCTCCATGTATTTGACAATGAGAATATGGTTCCTTGTTTTAAGTGTGGACATAAACTGGGTATCACTGGCAGTGTTGTAGTGTTCGAAAATTTTCATCTGTACACTGAAAGCTTAATCATTTGGCATACTATCAACTTTTACTGGTTCACAATAACTAGCTTGGATCAATTTGCTAGAAGTTTTTCTTCTGCTGTTTAACTGTAAGATAAGATGGGATGCCCTTGGTTTTACATGTTAACCGATATATCAATTTTGCTGGCAGATCAATGAGAAAGCAAGTGAGGAAGTGTTGGAAATAGAACAGAAGTACAACAAGATCCGCAAGCCTGTTTATGATAAGCGGAATGATATCATTAACTCTATTTCTGACTTCTGGTTGACTGCTGTTAGTGGCCCCATCCTGATCCTTTGTTCTCTCTATATTCTGGAATTCTGAAGATTATTTTACACTATATCTCATTTGCTTGCAGTTTTTGAGTCATCCTGTTCTTGGTGACCTTCTAACTGAAGAGGACCAAAAGGTTTGATTCTAATTTGTTGCATATAAACTTCTGAAGCAAACCATTACTGTTTCTCTAAGCAAACCACCTGCTCAATTAGCAAAGAGTCTCTCATCTATACCCTGTCTAAGTGCAGTTTGAATGACTGCTTTCGTTCTGATCTGAAACTCATAATCTTACTGCCTTCTTTCTTGCTAGATTTTCAAATTCTTAAGTTCTATTGAAGTGGAAGACTCGAAAGATGTGAAATTTGGTTACTCAATCACGTTTGTGAGTTCATTACTCTCTTGATGATGAAATTAATTTAGTACATTAGACTCTTGTGTTTGCTGGGGTGTAGAATGCTAATGACTCCTCGTCTTCCTCACAGAACTTTAAGCCCAATCCTTTCTTTGAAAATTCAAAGCTCTCAAAGACCTATACCTTCCTTGAAGATGGACCTACAAAAATCACAGCTACACCAATAAAATGGAAAGAAGGCAAAGTGAGTCGACAATTTCCGACTTGACAAATGTTACACATCTTTATCTTATCCGTTTCCTCTCACTATATATGTTATTTGGCTTTTGAAGGGCATTCCTAATGGCGTTGCTCAGGAGAAGAAAGGAAACAAGCGATCCCATGCTGAAGAGAGGTCAGCTTACAGATCTAGCATTTCTTAGGACTTCTAATTTTTTGCAAGGCTATTAATTGTTTATAACAAGCCTGTCAACTTGCAACTGATATATTGTTGGAACCTTGGTTTGTACAAGAGAGTAGGTTTGCTCACACATTAAGCCTGGTTATGATCTCTACCTTAGGAACTCAGATTCTGGTACAGCACATTTACTTACTAAATCTCACCTATAACTGGCTCATTTTAGTTTGATCTTTGAAATAACATACCAACCCCTAATTGACTGCTGCAATGTGTTTACTTTACTAAGAGTCGAGTGCGGAATATATTGGTCCATCCGTCACAAAAAGAAATGGCAGGATCAAAGTTAATGATTCAAATCACTCATGATTTCTGACAAAAAGAAATGACAGAATTACGTAAGAGCATAATAACTTTTTATAATATAAATGTTTTGGAAAAATTCTTTCTTGAGAAAACCTATTTGAGTTCCCAAATAGTAATAGTGCAAAATATGGCAGTTAATGCAGCCTTGTTGAAACTATTTTACAACTGTGTGCACTCACTAAGTTTTTGGTCTACAACATTCTGTGACTATCCTCATAAAGTCACAAATACTTGGTACTAAGTTGGTACAGAGACTGATACATGCTCGATGCTTTGTCCTCTGCACTCTTAATTTAAGCTGTACTTCTAAGTTTCATGTTTATGGTCATCCTATCTCAGTTGCTTTCCACTTGTTTTTACAGCTTCTTCACCTGGTTCAGTGAAGTCAATAAAAAAGATGATAGCGATGATGATGAAAATGAGGTTCTGGAGATTCAGGATGAGGTAAAATCTAATTCTTCGGCAATTAATTAAGATTTTTATCTCCCTTCTTTTTGGATGGGAGAAGGGGAGCTTATTTAGGTGTTTTGGTGCATAAAGCTGCTTTTATTTTCAAACTTATACCTTGGTTTTCTGGTTTCCAGGTTGCTGAAATAATCAAGGATGACTTGTGGCCAAACCCTTTAACTTATTTTACCAATGTTAGTTCCATACTGCATCTCTTGTTTCCTTGATCTGTTAATCAAGACTTAGTCGTGCACTTTTAACTAGATAACATTATCTGAGATTTACTAAACCACAGGAACCTGATGAAGAAGATTTTGAGGGTGATGAAGGTGGTGATGAGGTAAAGCAACATTCTTGCTAATAGTTGTCATAACTTGTGCACATCATTTGCTAAACTAAGTCATACTTAGTCATCTGTGGTTCTAATATGTCCTCCTTTTGGGTTTTACATTTATTTCTTTCCTAGGCCCACGTGGCATGAGGGTGAAAGGGCACTTTTGGAAAAAGTTTCTAAATTCTAAGTGCGGCCTTAGTAACTTTAGTTGTAGAATTTAAGTGTTTGACCCTGCTTGGTTGTGGCCTTTGTTGATTTTACTGGCGTTTAAGTCGATTTGTTGTCATTGTGAGTTGAGTTGCTTTTGTTGACTTCAGAATTACATAGTAGCTATGTAGTACAATGGTTTTCTTAAATACTAGGGATAATTTTGTTCCTACCCCCCCCCCCCCCTATCACATCAAGTAGAAAGAGTCTACTCAAGTTTGTAGGTAGTTTCTTCAAGAACTTTCCTTCGTTTACGTATGTCTAAAAGAAGCACATACTGTCAGCATTTGGAAGTTAACAGTTTCAAAGGTCCTTCCAAGTGACTGATATGATTTTACTAAAATCATATAGCTGCAACGCTGTAATATCCTATAGAACATAGAACCTCCTTCATAACTTTCTGCAAGAAATATAGTTCTTTGTGTTTGTGTTGCTTCAGTTTTTAGGTGTTTATCCTACATTTCCATCTTAGTTTTCATGGAAACTTTTTGCTGCTGTATTGTGGGTTAAACCAAAACTTCGTCTACCTTGCATTTTGATGAGAAGTTGGGTGGATATCAAGTTGGGTGTAATAGAAGGCGGAGTTGAGACATGTGAGGGAGAAAAGGGGAAGGTATGGTGAAGGAAGTCCTAGATTGAAGCCTCAAAAAGATGCCATCTTCAAAAGCATCATAAAGGGGGCATAGGGGATTCTTCTATACTTCTAAATACATTTGTGTCAGTACCTTGTTGGTGCTATTCTATGAGAACACGTTAACTTAGTATTAAACAAATGCATAATATAAGGAAGAGGATGAAACCATAGCTTTTGGTTTTATCTTCCAGGATGGTATTGGTTGGGTACTCTGCCTTTCAGAAAATCAAAGTTATCTTTGTTTTTGAAAACAATAAAGTATATATTCTAACAAAGAAATTGTGCTTATTTTCTTACTTTCATCCCTTGGGCCTAGGGAGAGAAGTCTTTTTGGTGGAACGACACTTTTTTGTTTAGGATAAGAGGAAGGAGTGGGTCTTACTGCTGTTTCACTTTCCTAGCCAAATGGAGGTAAAAGTGGGACATGTATGACTCCATCAAGAGTTGGGATCTTCACCGCAGGAAAGAGGAAAGCCTGCTTTGGTTTTAAACTTCGATTTCCAATTCTACCAAACAATATGAGGAGGAAGAAATGCAATTACGTGCAAGTGCCCCTATCTCTTCTTACCTTTCCTCAACTTAAATATTTGGCATTTGACTTGTATTCTGGATACAATGCAGAGATATTTTATGGTATAGAACTTGTTAATTGGGTCTTTTACTGCATGCTCATCATTATTTTTGGAAGATGATAGTACAGTTCTTGATTTTTTAAATGATAATGTCAAAATAAATTGTGTATATGATGCAAAATGAAAGATGTTCTGTTCTGTCTTTGGTTGATTTGATTTGAATTTCTATATGCAGGGGGAGGACTCTGAAGATGAAGGTGATGAGGAGGAAGAGGAAGACGACGAAGATGAAGATGACAAATGAACTGTTAATGGACCTCATATTTGATTTGATTTCTCTTCTTCAATGTTTCAATTATCATAGTTGGTATCTGTAAAGAAGCTTAATATTGCAGATAAAATCGAATTATATATAGTGGTGACTGCTTTTTTACTACAAA</genome_strand>
        <mrna_strand>GCGAAATCAAGAAAATCAGTTAAGCAGCTCTGTAACTCAGGTGGGAAAAAGGCAAAAAATAATGGTGGTTGACAAAGGGAAGAAGCAGAAAGTGGAAGAGGAAAGCTACATTGATGAAAAGCTCATTTTTTCCATTGAAAAATTGCAAGAAATACAAGACGACCTTGACAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATGAGAAAGCAAGTGAGGAAGTGTTGGAAATAGAACAGAAGTACAACAAGATCCGCAAGCCTGTTTATGATAAGCGGAATGATATCATTAACTCTATTTCTGACTTCTGGTTGACTGCT.....................................................................................TTTTTGAGTCATCCTGTTCTTGGTGACCTTCTAACTGAAGAGGACCAAAAG.................................................................................................................................................................................ATTTTCAAATTCTTAAGTTCTATTGAAGTGGAAGACTCGAAAGATGTGAAATTTGGTTACTCAATCACGTTT....................................................................................................AACTTTAAGCCCAATCCTTTCTTTGAAAATTCAAAGCTCTCAAAGACCTATACCTTCCTTGAAGATGGACCTACAAAAATCACAGCTACACCAATAAAATGGAAAGAAGGCAAA........................................................................................GGCATTCCTAATGGCGTTGCTCAGGAGAAGAAAGGAAACAAGCGATCCCATGCTGAAGAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTCACCTGGTTCAGTGAAGTCAATAAAAAAGATGATAGCGATGATGATGAAAATGAGGTTCTGGAGATTCAGGATGAG............................................................................................................................................GTTGCTGAAATAATCAAGGATGACTTGTGGCCAAACCCTTTAACTTATTTTACCAAT.....................................................................................................GAACCTGATGAAGAAGATTTTGAGGGTGATGAAGGTGGTGATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAGGACTCTGAAGATGAAGGTGATGAGGAGGAAGAGGAAGACGACGAAGATGAAGATGACAAATGAACTGTTAATGGACCTCATATTTGATTTGATTTCTCTTCTTCAATGTTTCAATTATCATAGTTGGTATCTGTAAAGAAGCTTAATATTGCAGATAAAATCGAATTATATATAGTGGTGACTGCTTTTTTTCTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707156" ref_strand="+" ref_description="SGN-E707156 [FA32AH04]">
      <seq>gcttaatcaagaaaatcagttaagcagctctgtaactcaggtgggaaaaaggcaaaaaataatggtggttgacaaagggaagaagcagaaagtggaagaggaaagctacattgatgaaaagctcattttttccattgaaaaattgcaagaaatacaagacgaccttgacaagatcaatgagaaagcaagtgaggaagtgttggaaatagaacagaagtacaacaagatccgcaagcctgtttatgataagcggaatgatatcattaactctatttctgacttctggttgactgcttttttgagtcatcctgttcttggtgaccttctaactgaagaggaccaaaagattttcaaattcttaagttctattgaagtggaagactcgaaagatgtgaaatttggttactcaatcacgtttaactttaagcccaatcctttctttgaaaattcaaagctctcaaagacctataccttccttgaagatggacctacaaaaatcacagctacaccaataaaatggaaagaaggcaaaggcattcctaatggcgttgctcaggagaagaaaggaaacaagcgatcccatgctgaagagagcttcttcacctggttcagtgaagtcaataaaaaagatgatagcgatgatgatgaaaatgaggttctggagattcaggatgaggttgctgaaataatcaaggatgacttgtggccaaaccctttaacttattttaccaatgaacctgatgaagaagattttgagggtgatgaangtggtgatgagggggaggactctgaagatgaaggtgatgaggaggaagaggaagacgacgaagatgaagatgacaaatgaactgttaatggacctcatnattgatttgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17673" stop="23267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17973" g_stop="18144" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18145" i_stop="19196" i_length="1052">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19197" g_stop="19319" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="295" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19320" i_stop="19404" i_length="85">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19405" g_stop="19455" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="346" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19456" i_stop="19632" i_length="177">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19633" g_stop="19704" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="418" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19705" i_stop="19804" i_length="100">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19805" g_stop="19918" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="532" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19919" i_stop="20006" i_length="88">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20007" g_stop="20068" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="594" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20069" i_stop="20799" i_length="731">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20800" g_stop="20881" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="676" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20882" i_stop="21021" i_length="140">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="21022" g_stop="21078" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="733" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="21079" i_stop="21179" i_length="101">
            <donor d_prob="0.627" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="21180" g_stop="21224" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="734" r_stop="778" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="21225" i_stop="22866" i_length="1642">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="22867" g_stop="22967" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="879" r_length="101" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E707156" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17973" e_stop="18144"/>
          <exon e_start="19197" e_stop="19319"/>
          <exon e_start="19405" e_stop="19455"/>
          <exon e_start="19633" e_stop="19704"/>
          <exon e_start="19805" e_stop="19918"/>
          <exon e_start="20007" e_stop="20068"/>
          <exon e_start="20800" e_stop="20881"/>
          <exon e_start="21022" e_stop="21078"/>
          <exon e_start="21180" e_stop="21224"/>
          <exon e_start="22867" e_stop="22967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAAATCAAGAAAATCAGTTAAGCAGCTCTGTAACTCAGGTGGGAAAAAGGCAAAAAATAATGGTGGTTGACAAAGGGAAGAAGCAGAAAGTGGAAGAGGAAAGCTACATTGATGAAAAGCTCATTTTTTCCATTGAAAAATTGCAAGAAATACAAGACGACCTTGACAAGGTAAATTCTATCTTCCTTGCGGTCAAACAATAAATCATGGAAATATTTGAGTTCTTGTTATTCCAATATTTGGGTAATTTTTCATCTACAAGGATTTTGTCTAAAACTGGAAATATCTTCAAGTAAAGATTCAATTTTTATGGTAAAGAATTAGGTATTAGTTAATTATTGCTTGGAGGCGGATCCAGGATTTGAATTTATGGGGGTTTCCCAGCGATCTCAATAAATTAATACTATAAGGTATCTAATCGGATTCGAGCAAATTAGGGGTCGGTTTAGATTTAGCAGCGTCAATTTCTGCCAGTGAACCAAGCACTTGCTTTGTTATTGGTTCCCAACAAATATTTTTTAGTGTCTGGTCAAAGGTCACTGGGTTTGCGGAAGCCCCACCTACCCCTGCATCCATCCCTGTTATCGCTAGGTAGTGCGTTGAACAGTTAATCTCAATGCAGAGCAGGTTGTTCGAGTGGAAAGTCTCTTTCTTTTCTTCTTTGGGTGGCTGGGTTTGGAGTTCTTGAAATATGTTGTTTATAAAATGTGCCAGAATATTGCTGATGGATATTGAAGGTCGGTGTAGCTGACTCTATGATCGACTAATCATTCTATGATGAAAATAGAATAACTTCCAATTTGGTGTTATTTTTGGGACATAGTTGTTCGGATGATACTCTATGTCTTCAATTTAATTTGGCACTCCTTAATTTTCCCATTTTCCATTGTTAAGATTAAGCTTTTAATGCATAGACATCCTTATATGTATTCTAACATTGCTCCAAAACTTGTCTGGTTTCTCCATGTATTTGACAATGAGAATATGGTTCCTTGTTTTAAGTGTGGACATAAACTGGGTATCACTGGCAGTGTTGTAGTGTTCGAAAATTTTCATCTGTACACTGAAAGCTTAATCATTTGGCATACTATCAACTTTTACTGGTTCACAATAACTAGCTTGGATCAATTTGCTAGAAGTTTTTCTTCTGCTGTTTAACTGTAAGATAAGATGGGATGCCCTTGGTTTTACATGTTAACCGATATATCAATTTTGCTGGCAGATCAATGAGAAAGCAAGTGAGGAAGTGTTGGAAATAGAACAGAAGTACAACAAGATCCGCAAGCCTGTTTATGATAAGCGGAATGATATCATTAACTCTATTTCTGACTTCTGGTTGACTGCTGTTAGTGGCCCCATCCTGATCCTTTGTTCTCTCTATATTCTGGAATTCTGAAGATTATTTTACACTATATCTCATTTGCTTGCAGTTTTTGAGTCATCCTGTTCTTGGTGACCTTCTAACTGAAGAGGACCAAAAGGTTTGATTCTAATTTGTTGCATATAAACTTCTGAAGCAAACCATTACTGTTTCTCTAAGCAAACCACCTGCTCAATTAGCAAAGAGTCTCTCATCTATACCCTGTCTAAGTGCAGTTTGAATGACTGCTTTCGTTCTGATCTGAAACTCATAATCTTACTGCCTTCTTTCTTGCTAGATTTTCAAATTCTTAAGTTCTATTGAAGTGGAAGACTCGAAAGATGTGAAATTTGGTTACTCAATCACGTTTGTGAGTTCATTACTCTCTTGATGATGAAATTAATTTAGTACATTAGACTCTTGTGTTTGCTGGGGTGTAGAATGCTAATGACTCCTCGTCTTCCTCACAGAACTTTAAGCCCAATCCTTTCTTTGAAAATTCAAAGCTCTCAAAGACCTATACCTTCCTTGAAGATGGACCTACAAAAATCACAGCTACACCAATAAAATGGAAAGAAGGCAAAGTGAGTCGACAATTTCCGACTTGACAAATGTTACACATCTTTATCTTATCCGTTTCCTCTCACTATATATGTTATTTGGCTTTTGAAGGGCATTCCTAATGGCGTTGCTCAGGAGAAGAAAGGAAACAAGCGATCCCATGCTGAAGAGAGGTCAGCTTACAGATCTAGCATTTCTTAGGACTTCTAATTTTTTGCAAGGCTATTAATTGTTTATAACAAGCCTGTCAACTTGCAACTGATATATTGTTGGAACCTTGGTTTGTACAAGAGAGTAGGTTTGCTCACACATTAAGCCTGGTTATGATCTCTACCTTAGGAACTCAGATTCTGGTACAGCACATTTACTTACTAAATCTCACCTATAACTGGCTCATTTTAGTTTGATCTTTGAAATAACATACCAACCCCTAATTGACTGCTGCAATGTGTTTACTTTACTAAGAGTCGAGTGCGGAATATATTGGTCCATCCGTCACAAAAAGAAATGGCAGGATCAAAGTTAATGATTCAAATCACTCATGATTTCTGACAAAAAGAAATGACAGAATTACGTAAGAGCATAATAACTTTTTATAATATAAATGTTTTGGAAAAATTCTTTCTTGAGAAAACCTATTTGAGTTCCCAAATAGTAATAGTGCAAAATATGGCAGTTAATGCAGCCTTGTTGAAACTATTTTACAACTGTGTGCACTCACTAAGTTTTTGGTCTACAACATTCTGTGACTATCCTCATAAAGTCACAAATACTTGGTACTAAGTTGGTACAGAGACTGATACATGCTCGATGCTTTGTCCTCTGCACTCTTAATTTAAGCTGTACTTCTAAGTTTCATGTTTATGGTCATCCTATCTCAGTTGCTTTCCACTTGTTTTTACAGCTTCTTCACCTGGTTCAGTGAAGTCAATAAAAAAGATGATAGCGATGATGATGAAAATGAGGTTCTGGAGATTCAGGATGAGGTAAAATCTAATTCTTCGGCAATTAATTAAGATTTTTATCTCCCTTCTTTTTGGATGGGAGAAGGGGAGCTTATTTAGGTGTTTTGGTGCATAAAGCTGCTTTTATTTTCAAACTTATACCTTGGTTTTCTGGTTTCCAGGTTGCTGAAATAATCAAGGATGACTTGTGGCCAAACCCTTTAACTTATTTTACCAATGTTAGTTCCATACTGCATCTCTTGTTTCCTTGATCTGTTAATCAAGACTTAGTCGTGCACTTTTAACTAGATAACATTATCTGAGATTTACTAAACCACAGGAACCTGATGAAGAAGATTTTGAGGGTGATGAAGGTGGTGATGAGGTAAAGCAACATTCTTGCTAATAGTTGTCATAACTTGTGCACATCATTTGCTAAACTAAGTCATACTTAGTCATCTGTGGTTCTAATATGTCCTCCTTTTGGGTTTTACATTTATTTCTTTCCTAGGCCCACGTGGCATGAGGGTGAAAGGGCACTTTTGGAAAAAGTTTCTAAATTCTAAGTGCGGCCTTAGTAACTTTAGTTGTAGAATTTAAGTGTTTGACCCTGCTTGGTTGTGGCCTTTGTTGATTTTACTGGCGTTTAAGTCGATTTGTTGTCATTGTGAGTTGAGTTGCTTTTGTTGACTTCAGAATTACATAGTAGCTATGTAGTACAATGGTTTTCTTAAATACTAGGGATAATTTTGTTCCTACCCCCCCCCCCCCCTATCACATCAAGTAGAAAGAGTCTACTCAAGTTTGTAGGTAGTTTCTTCAAGAACTTTCCTTCGTTTACGTATGTCTAAAAGAAGCACATACTGTCAGCATTTGGAAGTTAACAGTTTCAAAGGTCCTTCCAAGTGACTGATATGATTTTACTAAAATCATATAGCTGCAACGCTGTAATATCCTATAGAACATAGAACCTCCTTCATAACTTTCTGCAAGAAATATAGTTCTTTGTGTTTGTGTTGCTTCAGTTTTTAGGTGTTTATCCTACATTTCCATCTTAGTTTTCATGGAAACTTTTTGCTGCTGTATTGTGGGTTAAACCAAAACTTCGTCTACCTTGCATTTTGATGAGAAGTTGGGTGGATATCAAGTTGGGTGTAATAGAAGGCGGAGTTGAGACATGTGAGGGAGAAAAGGGGAAGGTATGGTGAAGGAAGTCCTAGATTGAAGCCTCAAAAAGATGCCATCTTCAAAAGCATCATAAAGGGGGCATAGGGGATTCTTCTATACTTCTAAATACATTTGTGTCAGTACCTTGTTGGTGCTATTCTATGAGAACACGTTAACTTAGTATTAAACAAATGCATAATATAAGGAAGAGGATGAAACCATAGCTTTTGGTTTTATCTTCCAGGATGGTATTGGTTGGGTACTCTGCCTTTCAGAAAATCAAAGTTATCTTTGTTTTTGAAAACAATAAAGTATATATTCTAACAAAGAAATTGTGCTTATTTTCTTACTTTCATCCCTTGGGCCTAGGGAGAGAAGTCTTTTTGGTGGAACGACACTTTTTTGTTTAGGATAAGAGGAAGGAGTGGGTCTTACTGCTGTTTCACTTTCCTAGCCAAATGGAGGTAAAAGTGGGACATGTATGACTCCATCAAGAGTTGGGATCTTCACCGCAGGAAAGAGGAAAGCCTGCTTTGGTTTTAAACTTCGATTTCCAATTCTACCAAACAATATGAGGAGGAAGAAATGCAATTACGTGCAAGTGCCCCTATCTCTTCTTACCTTTCCTCAACTTAAATATTTGGCATTTGACTTGTATTCTGGATACAATGCAGAGATATTTTATGGTATAGAACTTGTTAATTGGGTCTTTTACTGCATGCTCATCATTATTTTTGGAAGATGATAGTACAGTTCTTGATTTTTTAAATGATAATGTCAAAATAAATTGTGTATATGATGCAAAATGAAAGATGTTCTGTTCTGTCTTTGGTTGATTTGATTTGAATTTCTATATGCAGGGGGAGGACTCTGAAGATGAAGGTGATGAGGAGGAAGAGGAAGACGACGAAGATGAAGATGACAAATGAACTGTTAATGGACCTCATATTTGATTTGATTT</genome_strand>
        <mrna_strand>GCTTAATCAAGAAAATCAGTTAAGCAGCTCTGTAACTCAGGTGGGAAAAAGGCAAAAAATAATGGTGGTTGACAAAGGGAAGAAGCAGAAAGTGGAAGAGGAAAGCTACATTGATGAAAAGCTCATTTTTTCCATTGAAAAATTGCAAGAAATACAAGACGACCTTGACAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATGAGAAAGCAAGTGAGGAAGTGTTGGAAATAGAACAGAAGTACAACAAGATCCGCAAGCCTGTTTATGATAAGCGGAATGATATCATTAACTCTATTTCTGACTTCTGGTTGACTGCT.....................................................................................TTTTTGAGTCATCCTGTTCTTGGTGACCTTCTAACTGAAGAGGACCAAAAG.................................................................................................................................................................................ATTTTCAAATTCTTAAGTTCTATTGAAGTGGAAGACTCGAAAGATGTGAAATTTGGTTACTCAATCACGTTT....................................................................................................AACTTTAAGCCCAATCCTTTCTTTGAAAATTCAAAGCTCTCAAAGACCTATACCTTCCTTGAAGATGGACCTACAAAAATCACAGCTACACCAATAAAATGGAAAGAAGGCAAA........................................................................................GGCATTCCTAATGGCGTTGCTCAGGAGAAGAAAGGAAACAAGCGATCCCATGCTGAAGAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTCACCTGGTTCAGTGAAGTCAATAAAAAAGATGATAGCGATGATGATGAAAATGAGGTTCTGGAGATTCAGGATGAG............................................................................................................................................GTTGCTGAAATAATCAAGGATGACTTGTGGCCAAACCCTTTAACTTATTTTACCAAT.....................................................................................................GAACCTGATGAAGAAGATTTTGAGGGTGATGAANGTGGTGATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAGGACTCTGAAGATGAAGGTGATGAGGAGGAAGAGGAAGACGACGAAGATGAAGATGACAAATGAACTGTTAATGGACCTCATNATTGATTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345351" ref_strand="+" ref_description="SGN-E345351 [cTOF-13-K11]">
      <seq>cgaaatcaagaaaatcagttaagcagctctgtaactcaggtgggaaaaaggcaaaaaataatggtggttgacaaagggaagaagcagaaagtggaagaggaaagctacattgatgaaaagctcattttttccattgaaaaattgcaagaaatacaagacgaccttgacaagatcaatgagaaagcaagtgaggaagtgttggaaatagaacagaagtacaacaagatccgcaagcctgtttatgataagcggaatgatatcattaactctatttctgacttctggttgactgcttttttgagtcatcctgttcttggtgaccttctaactgaagaggaccaaaagattttcaaattcttaagttctattgaagtggaagactcgaaagatgtgaaatttggttactcaatcacgtttaactttaagcccaatcctttctttgaaaattcaaagctctcaaagacctataccttccttgaagatggacctacaaaaatcacagctacaccaataaaatggaaagaaggcaaaggcattcctaatggcgttgctcaggagaagaaaggaaacaagcgatcccatgctgaagagagcttcttcacctggttcagtgaagtcaataaaaaagatgatagcgatgatgatgaaaatgaggttctggagattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17674" stop="21173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17974" g_stop="18144" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18145" i_stop="19196" i_length="1052">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19197" g_stop="19319" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="294" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19320" i_stop="19404" i_length="85">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19405" g_stop="19455" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="345" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19456" i_stop="19632" i_length="177">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19633" g_stop="19704" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="417" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19705" i_stop="19804" i_length="100">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19805" g_stop="19918" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="531" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19919" i_stop="20006" i_length="88">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20007" g_stop="20068" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="593" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20069" i_stop="20799" i_length="731">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20800" g_stop="20873" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="667" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E345351" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17974" e_stop="18144"/>
          <exon e_start="19197" e_stop="19319"/>
          <exon e_start="19405" e_stop="19455"/>
          <exon e_start="19633" e_stop="19704"/>
          <exon e_start="19805" e_stop="19918"/>
          <exon e_start="20007" e_stop="20068"/>
          <exon e_start="20800" e_stop="20873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAATCAAGAAAATCAGTTAAGCAGCTCTGTAACTCAGGTGGGAAAAAGGCAAAAAATAATGGTGGTTGACAAAGGGAAGAAGCAGAAAGTGGAAGAGGAAAGCTACATTGATGAAAAGCTCATTTTTTCCATTGAAAAATTGCAAGAAATACAAGACGACCTTGACAAGGTAAATTCTATCTTCCTTGCGGTCAAACAATAAATCATGGAAATATTTGAGTTCTTGTTATTCCAATATTTGGGTAATTTTTCATCTACAAGGATTTTGTCTAAAACTGGAAATATCTTCAAGTAAAGATTCAATTTTTATGGTAAAGAATTAGGTATTAGTTAATTATTGCTTGGAGGCGGATCCAGGATTTGAATTTATGGGGGTTTCCCAGCGATCTCAATAAATTAATACTATAAGGTATCTAATCGGATTCGAGCAAATTAGGGGTCGGTTTAGATTTAGCAGCGTCAATTTCTGCCAGTGAACCAAGCACTTGCTTTGTTATTGGTTCCCAACAAATATTTTTTAGTGTCTGGTCAAAGGTCACTGGGTTTGCGGAAGCCCCACCTACCCCTGCATCCATCCCTGTTATCGCTAGGTAGTGCGTTGAACAGTTAATCTCAATGCAGAGCAGGTTGTTCGAGTGGAAAGTCTCTTTCTTTTCTTCTTTGGGTGGCTGGGTTTGGAGTTCTTGAAATATGTTGTTTATAAAATGTGCCAGAATATTGCTGATGGATATTGAAGGTCGGTGTAGCTGACTCTATGATCGACTAATCATTCTATGATGAAAATAGAATAACTTCCAATTTGGTGTTATTTTTGGGACATAGTTGTTCGGATGATACTCTATGTCTTCAATTTAATTTGGCACTCCTTAATTTTCCCATTTTCCATTGTTAAGATTAAGCTTTTAATGCATAGACATCCTTATATGTATTCTAACATTGCTCCAAAACTTGTCTGGTTTCTCCATGTATTTGACAATGAGAATATGGTTCCTTGTTTTAAGTGTGGACATAAACTGGGTATCACTGGCAGTGTTGTAGTGTTCGAAAATTTTCATCTGTACACTGAAAGCTTAATCATTTGGCATACTATCAACTTTTACTGGTTCACAATAACTAGCTTGGATCAATTTGCTAGAAGTTTTTCTTCTGCTGTTTAACTGTAAGATAAGATGGGATGCCCTTGGTTTTACATGTTAACCGATATATCAATTTTGCTGGCAGATCAATGAGAAAGCAAGTGAGGAAGTGTTGGAAATAGAACAGAAGTACAACAAGATCCGCAAGCCTGTTTATGATAAGCGGAATGATATCATTAACTCTATTTCTGACTTCTGGTTGACTGCTGTTAGTGGCCCCATCCTGATCCTTTGTTCTCTCTATATTCTGGAATTCTGAAGATTATTTTACACTATATCTCATTTGCTTGCAGTTTTTGAGTCATCCTGTTCTTGGTGACCTTCTAACTGAAGAGGACCAAAAGGTTTGATTCTAATTTGTTGCATATAAACTTCTGAAGCAAACCATTACTGTTTCTCTAAGCAAACCACCTGCTCAATTAGCAAAGAGTCTCTCATCTATACCCTGTCTAAGTGCAGTTTGAATGACTGCTTTCGTTCTGATCTGAAACTCATAATCTTACTGCCTTCTTTCTTGCTAGATTTTCAAATTCTTAAGTTCTATTGAAGTGGAAGACTCGAAAGATGTGAAATTTGGTTACTCAATCACGTTTGTGAGTTCATTACTCTCTTGATGATGAAATTAATTTAGTACATTAGACTCTTGTGTTTGCTGGGGTGTAGAATGCTAATGACTCCTCGTCTTCCTCACAGAACTTTAAGCCCAATCCTTTCTTTGAAAATTCAAAGCTCTCAAAGACCTATACCTTCCTTGAAGATGGACCTACAAAAATCACAGCTACACCAATAAAATGGAAAGAAGGCAAAGTGAGTCGACAATTTCCGACTTGACAAATGTTACACATCTTTATCTTATCCGTTTCCTCTCACTATATATGTTATTTGGCTTTTGAAGGGCATTCCTAATGGCGTTGCTCAGGAGAAGAAAGGAAACAAGCGATCCCATGCTGAAGAGAGGTCAGCTTACAGATCTAGCATTTCTTAGGACTTCTAATTTTTTGCAAGGCTATTAATTGTTTATAACAAGCCTGTCAACTTGCAACTGATATATTGTTGGAACCTTGGTTTGTACAAGAGAGTAGGTTTGCTCACACATTAAGCCTGGTTATGATCTCTACCTTAGGAACTCAGATTCTGGTACAGCACATTTACTTACTAAATCTCACCTATAACTGGCTCATTTTAGTTTGATCTTTGAAATAACATACCAACCCCTAATTGACTGCTGCAATGTGTTTACTTTACTAAGAGTCGAGTGCGGAATATATTGGTCCATCCGTCACAAAAAGAAATGGCAGGATCAAAGTTAATGATTCAAATCACTCATGATTTCTGACAAAAAGAAATGACAGAATTACGTAAGAGCATAATAACTTTTTATAATATAAATGTTTTGGAAAAATTCTTTCTTGAGAAAACCTATTTGAGTTCCCAAATAGTAATAGTGCAAAATATGGCAGTTAATGCAGCCTTGTTGAAACTATTTTACAACTGTGTGCACTCACTAAGTTTTTGGTCTACAACATTCTGTGACTATCCTCATAAAGTCACAAATACTTGGTACTAAGTTGGTACAGAGACTGATACATGCTCGATGCTTTGTCCTCTGCACTCTTAATTTAAGCTGTACTTCTAAGTTTCATGTTTATGGTCATCCTATCTCAGTTGCTTTCCACTTGTTTTTACAGCTTCTTCACCTGGTTCAGTGAAGTCAATAAAAAAGATGATAGCGATGATGATGAAAATGAGGTTCTGGAGATTC</genome_strand>
        <mrna_strand>CGAAATCAAGAAAATCAGTTAAGCAGCTCTGTAACTCAGGTGGGAAAAAGGCAAAAAATAATGGTGGTTGACAAAGGGAAGAAGCAGAAAGTGGAAGAGGAAAGCTACATTGATGAAAAGCTCATTTTTTCCATTGAAAAATTGCAAGAAATACAAGACGACCTTGACAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATGAGAAAGCAAGTGAGGAAGTGTTGGAAATAGAACAGAAGTACAACAAGATCCGCAAGCCTGTTTATGATAAGCGGAATGATATCATTAACTCTATTTCTGACTTCTGGTTGACTGCT.....................................................................................TTTTTGAGTCATCCTGTTCTTGGTGACCTTCTAACTGAAGAGGACCAAAAG.................................................................................................................................................................................ATTTTCAAATTCTTAAGTTCTATTGAAGTGGAAGACTCGAAAGATGTGAAATTTGGTTACTCAATCACGTTT....................................................................................................AACTTTAAGCCCAATCCTTTCTTTGAAAATTCAAAGCTCTCAAAGACCTATACCTTCCTTGAAGATGGACCTACAAAAATCACAGCTACACCAATAAAATGGAAAGAAGGCAAA........................................................................................GGCATTCCTAATGGCGTTGCTCAGGAGAAGAAAGGAAACAAGCGATCCCATGCTGAAGAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTCACCTGGTTCAGTGAAGTCAATAAAAAAGATGATAGCGATGATGATGAAAATGAGGTTCTGGAGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310049" ref_strand="+" ref_description="SGN-E310049 [cLEZ-8-A4]">
      <seq>cgaaatcaagaaaatcagttaagcagctctgtaactcaggtgggaaaaaggcaaaaaataatggtggttgacaaagggaagaagcagaaagtggaagaggaaagctacattgatgaaaagctcattttttccattgaaaaattgcaagaaatacaagacgaccttgacaagatcaatgagaaagcaagtgaggaagtgttggaaatagaacagaagtacaacaagatccgcaagcctgtttatgataagcggaatgatatcattaactctatttctgacttctggttgactgcttttttgagtcatcctgttcttggtgaccttctaactgaagaggaccaaaagattttcaaattcttaagttctattgaagtggaagactcgaaagatgtgaaatttggttactcaatcacgtttaactttaagcccaatcctttctttgaaaattcaaagctctcaaagacctataccttccttgaagatggacctacaaaaatcacagctacaccaataaaatggaaagaaggcaaaggcattcctaatggcgttgctcaggagaagaaaggaaacaagcgatcccatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17674" stop="20361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17974" g_stop="18144" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18145" i_stop="19196" i_length="1052">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19197" g_stop="19319" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="294" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19320" i_stop="19404" i_length="85">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19405" g_stop="19455" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="345" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19456" i_stop="19632" i_length="177">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19633" g_stop="19704" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="417" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19705" i_stop="19804" i_length="100">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19805" g_stop="19918" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="531" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19919" i_stop="20006" i_length="88">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20007" g_stop="20061" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="586" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E310049" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17974" e_stop="18144"/>
          <exon e_start="19197" e_stop="19319"/>
          <exon e_start="19405" e_stop="19455"/>
          <exon e_start="19633" e_stop="19704"/>
          <exon e_start="19805" e_stop="19918"/>
          <exon e_start="20007" e_stop="20061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAATCAAGAAAATCAGTTAAGCAGCTCTGTAACTCAGGTGGGAAAAAGGCAAAAAATAATGGTGGTTGACAAAGGGAAGAAGCAGAAAGTGGAAGAGGAAAGCTACATTGATGAAAAGCTCATTTTTTCCATTGAAAAATTGCAAGAAATACAAGACGACCTTGACAAGGTAAATTCTATCTTCCTTGCGGTCAAACAATAAATCATGGAAATATTTGAGTTCTTGTTATTCCAATATTTGGGTAATTTTTCATCTACAAGGATTTTGTCTAAAACTGGAAATATCTTCAAGTAAAGATTCAATTTTTATGGTAAAGAATTAGGTATTAGTTAATTATTGCTTGGAGGCGGATCCAGGATTTGAATTTATGGGGGTTTCCCAGCGATCTCAATAAATTAATACTATAAGGTATCTAATCGGATTCGAGCAAATTAGGGGTCGGTTTAGATTTAGCAGCGTCAATTTCTGCCAGTGAACCAAGCACTTGCTTTGTTATTGGTTCCCAACAAATATTTTTTAGTGTCTGGTCAAAGGTCACTGGGTTTGCGGAAGCCCCACCTACCCCTGCATCCATCCCTGTTATCGCTAGGTAGTGCGTTGAACAGTTAATCTCAATGCAGAGCAGGTTGTTCGAGTGGAAAGTCTCTTTCTTTTCTTCTTTGGGTGGCTGGGTTTGGAGTTCTTGAAATATGTTGTTTATAAAATGTGCCAGAATATTGCTGATGGATATTGAAGGTCGGTGTAGCTGACTCTATGATCGACTAATCATTCTATGATGAAAATAGAATAACTTCCAATTTGGTGTTATTTTTGGGACATAGTTGTTCGGATGATACTCTATGTCTTCAATTTAATTTGGCACTCCTTAATTTTCCCATTTTCCATTGTTAAGATTAAGCTTTTAATGCATAGACATCCTTATATGTATTCTAACATTGCTCCAAAACTTGTCTGGTTTCTCCATGTATTTGACAATGAGAATATGGTTCCTTGTTTTAAGTGTGGACATAAACTGGGTATCACTGGCAGTGTTGTAGTGTTCGAAAATTTTCATCTGTACACTGAAAGCTTAATCATTTGGCATACTATCAACTTTTACTGGTTCACAATAACTAGCTTGGATCAATTTGCTAGAAGTTTTTCTTCTGCTGTTTAACTGTAAGATAAGATGGGATGCCCTTGGTTTTACATGTTAACCGATATATCAATTTTGCTGGCAGATCAATGAGAAAGCAAGTGAGGAAGTGTTGGAAATAGAACAGAAGTACAACAAGATCCGCAAGCCTGTTTATGATAAGCGGAATGATATCATTAACTCTATTTCTGACTTCTGGTTGACTGCTGTTAGTGGCCCCATCCTGATCCTTTGTTCTCTCTATATTCTGGAATTCTGAAGATTATTTTACACTATATCTCATTTGCTTGCAGTTTTTGAGTCATCCTGTTCTTGGTGACCTTCTAACTGAAGAGGACCAAAAGGTTTGATTCTAATTTGTTGCATATAAACTTCTGAAGCAAACCATTACTGTTTCTCTAAGCAAACCACCTGCTCAATTAGCAAAGAGTCTCTCATCTATACCCTGTCTAAGTGCAGTTTGAATGACTGCTTTCGTTCTGATCTGAAACTCATAATCTTACTGCCTTCTTTCTTGCTAGATTTTCAAATTCTTAAGTTCTATTGAAGTGGAAGACTCGAAAGATGTGAAATTTGGTTACTCAATCACGTTTGTGAGTTCATTACTCTCTTGATGATGAAATTAATTTAGTACATTAGACTCTTGTGTTTGCTGGGGTGTAGAATGCTAATGACTCCTCGTCTTCCTCACAGAACTTTAAGCCCAATCCTTTCTTTGAAAATTCAAAGCTCTCAAAGACCTATACCTTCCTTGAAGATGGACCTACAAAAATCACAGCTACACCAATAAAATGGAAAGAAGGCAAAGTGAGTCGACAATTTCCGACTTGACAAATGTTACACATCTTTATCTTATCCGTTTCCTCTCACTATATATGTTATTTGGCTTTTGAAGGGCATTCCTAATGGCGTTGCTCAGGAGAAGAAAGGAAACAAGCGATCCCATGCTG</genome_strand>
        <mrna_strand>CGAAATCAAGAAAATCAGTTAAGCAGCTCTGTAACTCAGGTGGGAAAAAGGCAAAAAATAATGGTGGTTGACAAAGGGAAGAAGCAGAAAGTGGAAGAGGAAAGCTACATTGATGAAAAGCTCATTTTTTCCATTGAAAAATTGCAAGAAATACAAGACGACCTTGACAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATGAGAAAGCAAGTGAGGAAGTGTTGGAAATAGAACAGAAGTACAACAAGATCCGCAAGCCTGTTTATGATAAGCGGAATGATATCATTAACTCTATTTCTGACTTCTGGTTGACTGCT.....................................................................................TTTTTGAGTCATCCTGTTCTTGGTGACCTTCTAACTGAAGAGGACCAAAAG.................................................................................................................................................................................ATTTTCAAATTCTTAAGTTCTATTGAAGTGGAAGACTCGAAAGATGTGAAATTTGGTTACTCAATCACGTTT....................................................................................................AACTTTAAGCCCAATCCTTTCTTTGAAAATTCAAAGCTCTCAAAGACCTATACCTTCCTTGAAGATGGACCTACAAAAATCACAGCTACACCAATAAAATGGAAAGAAGGCAAA........................................................................................GGCATTCCTAATGGCGTTGCTCAGGAGAAGAAAGGAAACAAGCGATCCCATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316773" ref_strand="+" ref_description="SGN-E316773 [cTOB-6-G11]">
      <seq>atcagttaagcagctctgtaactcaggtgggaaaaaggcaaaaaataatggtggttgacaaagggaagaagcacaaagtggaagaggaaagctacattgatgaaaagctcattttttccattgaaaaattgcaagaaatacaagacgaccttgacaagatcaatgagaaagcaagtgaggaagtgttggaaatagaacagaagtacaacaagatccgcaagcctgtttatgataagcggaatgatatcattaactctatttctgacttctggttgactgcttttttgagtcatcctgttcttggtgaccttctaactgaagaggaccaaaagattttcaaattcttaagttctattgaagtggaagactcgaaagatgtgaaatttggttactcaatcacgtttaactttaaacccaatcctttctttgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17687" stop="20133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17987" g_stop="18144" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18145" i_stop="19196" i_length="1052">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19197" g_stop="19319" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="281" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19320" i_stop="19404" i_length="85">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19405" g_stop="19455" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="332" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19456" i_stop="19632" i_length="177">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19633" g_stop="19704" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="404" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19705" i_stop="19804" i_length="100">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19805" g_stop="19833" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="433" r_length="29" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E316773" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17987" e_stop="18144"/>
          <exon e_start="19197" e_stop="19319"/>
          <exon e_start="19405" e_stop="19455"/>
          <exon e_start="19633" e_stop="19704"/>
          <exon e_start="19805" e_stop="19833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGTTAAGCAGCTCTGTAACTCAGGTGGGAAAAAGGCAAAAAATAATGGTGGTTGACAAAGGGAAGAAGCAGAAAGTGGAAGAGGAAAGCTACATTGATGAAAAGCTCATTTTTTCCATTGAAAAATTGCAAGAAATACAAGACGACCTTGACAAGGTAAATTCTATCTTCCTTGCGGTCAAACAATAAATCATGGAAATATTTGAGTTCTTGTTATTCCAATATTTGGGTAATTTTTCATCTACAAGGATTTTGTCTAAAACTGGAAATATCTTCAAGTAAAGATTCAATTTTTATGGTAAAGAATTAGGTATTAGTTAATTATTGCTTGGAGGCGGATCCAGGATTTGAATTTATGGGGGTTTCCCAGCGATCTCAATAAATTAATACTATAAGGTATCTAATCGGATTCGAGCAAATTAGGGGTCGGTTTAGATTTAGCAGCGTCAATTTCTGCCAGTGAACCAAGCACTTGCTTTGTTATTGGTTCCCAACAAATATTTTTTAGTGTCTGGTCAAAGGTCACTGGGTTTGCGGAAGCCCCACCTACCCCTGCATCCATCCCTGTTATCGCTAGGTAGTGCGTTGAACAGTTAATCTCAATGCAGAGCAGGTTGTTCGAGTGGAAAGTCTCTTTCTTTTCTTCTTTGGGTGGCTGGGTTTGGAGTTCTTGAAATATGTTGTTTATAAAATGTGCCAGAATATTGCTGATGGATATTGAAGGTCGGTGTAGCTGACTCTATGATCGACTAATCATTCTATGATGAAAATAGAATAACTTCCAATTTGGTGTTATTTTTGGGACATAGTTGTTCGGATGATACTCTATGTCTTCAATTTAATTTGGCACTCCTTAATTTTCCCATTTTCCATTGTTAAGATTAAGCTTTTAATGCATAGACATCCTTATATGTATTCTAACATTGCTCCAAAACTTGTCTGGTTTCTCCATGTATTTGACAATGAGAATATGGTTCCTTGTTTTAAGTGTGGACATAAACTGGGTATCACTGGCAGTGTTGTAGTGTTCGAAAATTTTCATCTGTACACTGAAAGCTTAATCATTTGGCATACTATCAACTTTTACTGGTTCACAATAACTAGCTTGGATCAATTTGCTAGAAGTTTTTCTTCTGCTGTTTAACTGTAAGATAAGATGGGATGCCCTTGGTTTTACATGTTAACCGATATATCAATTTTGCTGGCAGATCAATGAGAAAGCAAGTGAGGAAGTGTTGGAAATAGAACAGAAGTACAACAAGATCCGCAAGCCTGTTTATGATAAGCGGAATGATATCATTAACTCTATTTCTGACTTCTGGTTGACTGCTGTTAGTGGCCCCATCCTGATCCTTTGTTCTCTCTATATTCTGGAATTCTGAAGATTATTTTACACTATATCTCATTTGCTTGCAGTTTTTGAGTCATCCTGTTCTTGGTGACCTTCTAACTGAAGAGGACCAAAAGGTTTGATTCTAATTTGTTGCATATAAACTTCTGAAGCAAACCATTACTGTTTCTCTAAGCAAACCACCTGCTCAATTAGCAAAGAGTCTCTCATCTATACCCTGTCTAAGTGCAGTTTGAATGACTGCTTTCGTTCTGATCTGAAACTCATAATCTTACTGCCTTCTTTCTTGCTAGATTTTCAAATTCTTAAGTTCTATTGAAGTGGAAGACTCGAAAGATGTGAAATTTGGTTACTCAATCACGTTTGTGAGTTCATTACTCTCTTGATGATGAAATTAATTTAGTACATTAGACTCTTGTGTTTGCTGGGGTGTAGAATGCTAATGACTCCTCGTCTTCCTCACAGAACTTTAAGCCCAATCCTTTCTTTGAAAA</genome_strand>
        <mrna_strand>ATCAGTTAAGCAGCTCTGTAACTCAGGTGGGAAAAAGGCAAAAAATAATGGTGGTTGACAAAGGGAAGAAGCACAAAGTGGAAGAGGAAAGCTACATTGATGAAAAGCTCATTTTTTCCATTGAAAAATTGCAAGAAATACAAGACGACCTTGACAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATGAGAAAGCAAGTGAGGAAGTGTTGGAAATAGAACAGAAGTACAACAAGATCCGCAAGCCTGTTTATGATAAGCGGAATGATATCATTAACTCTATTTCTGACTTCTGGTTGACTGCT.....................................................................................TTTTTGAGTCATCCTGTTCTTGGTGACCTTCTAACTGAAGAGGACCAAAAG.................................................................................................................................................................................ATTTTCAAATTCTTAAGTTCTATTGAAGTGGAAGACTCGAAAGATGTGAAATTTGGTTACTCAATCACGTTT....................................................................................................AACTTTAAACCCAATCCTTTCTTTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317199" ref_strand="+" ref_description="SGN-E317199 [cTOA-28-O3]">
      <seq>cctgtttatgataagcggaatgatatcattaactctatttctgacttctggttgactgcttttttgagtcatcctgttcttggtgaccttctaactgaagaggaccaaaagattttcaaattcttaagttctattgaagtggaagactcgaaagatgtgaaatttggttactcaatcacgtttaactttaagcccaatcctttctttgaaaattcaaagctctcaaagacctataccttccttgaagatggacctacaaaaatcacagctacaccaataaaatggaaagaaggcaaaggcattcctaatggcgttgctcaggagaagaaaggaaacaagcgatcccatgctgaagagagcttcttcacctggttcagtgaagtcaataaaaaagatgatagcgatgatgatgaaaatgaggttctggagattcaggatgaggttgctganataatcaaggatgacttgtggccaaaccctttaacttattttaccaatgaacctgatgaagaagattttgagggtgatgaangtggtgatgagggggangactctgaagatgaangtgatgangatgaanaggaagacgacgaagatgaaagatgacaatgaactgtgtatggacctcatatttgatttgatttctcttcttcatgtttcaatatcatagttggtatctgtaagaagcttaatattgcagataaatcgaatatatatagtggtgactgcttttttactacaaaatgaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18960" stop="23380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19260" g_stop="19319" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19320" i_stop="19404" i_length="85">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19405" g_stop="19455" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="111" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19456" i_stop="19632" i_length="177">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19633" g_stop="19704" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="183" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19705" i_stop="19804" i_length="100">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19805" g_stop="19918" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="297" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19919" i_stop="20006" i_length="88">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20007" g_stop="20068" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="359" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20069" i_stop="20799" i_length="731">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20800" g_stop="20881" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="441" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20882" i_stop="21021" i_length="140">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="21022" g_stop="21078" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="498" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="21079" i_stop="21179" i_length="101">
            <donor d_prob="0.627" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="21180" g_stop="21224" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="543" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="21225" i_stop="22866" i_length="1642">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="22867" g_stop="23080" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="752" r_length="209" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E317199" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19260" e_stop="19319"/>
          <exon e_start="19405" e_stop="19455"/>
          <exon e_start="19633" e_stop="19704"/>
          <exon e_start="19805" e_stop="19918"/>
          <exon e_start="20007" e_stop="20068"/>
          <exon e_start="20800" e_stop="20881"/>
          <exon e_start="21022" e_stop="21078"/>
          <exon e_start="21180" e_stop="21224"/>
          <exon e_start="22867" e_stop="23080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGTTTATGATAAGCGGAATGATATCATTAACTCTATTTCTGACTTCTGGTTGACTGCTGTTAGTGGCCCCATCCTGATCCTTTGTTCTCTCTATATTCTGGAATTCTGAAGATTATTTTACACTATATCTCATTTGCTTGCAGTTTTTGAGTCATCCTGTTCTTGGTGACCTTCTAACTGAAGAGGACCAAAAGGTTTGATTCTAATTTGTTGCATATAAACTTCTGAAGCAAACCATTACTGTTTCTCTAAGCAAACCACCTGCTCAATTAGCAAAGAGTCTCTCATCTATACCCTGTCTAAGTGCAGTTTGAATGACTGCTTTCGTTCTGATCTGAAACTCATAATCTTACTGCCTTCTTTCTTGCTAGATTTTCAAATTCTTAAGTTCTATTGAAGTGGAAGACTCGAAAGATGTGAAATTTGGTTACTCAATCACGTTTGTGAGTTCATTACTCTCTTGATGATGAAATTAATTTAGTACATTAGACTCTTGTGTTTGCTGGGGTGTAGAATGCTAATGACTCCTCGTCTTCCTCACAGAACTTTAAGCCCAATCCTTTCTTTGAAAATTCAAAGCTCTCAAAGACCTATACCTTCCTTGAAGATGGACCTACAAAAATCACAGCTACACCAATAAAATGGAAAGAAGGCAAAGTGAGTCGACAATTTCCGACTTGACAAATGTTACACATCTTTATCTTATCCGTTTCCTCTCACTATATATGTTATTTGGCTTTTGAAGGGCATTCCTAATGGCGTTGCTCAGGAGAAGAAAGGAAACAAGCGATCCCATGCTGAAGAGAGGTCAGCTTACAGATCTAGCATTTCTTAGGACTTCTAATTTTTTGCAAGGCTATTAATTGTTTATAACAAGCCTGTCAACTTGCAACTGATATATTGTTGGAACCTTGGTTTGTACAAGAGAGTAGGTTTGCTCACACATTAAGCCTGGTTATGATCTCTACCTTAGGAACTCAGATTCTGGTACAGCACATTTACTTACTAAATCTCACCTATAACTGGCTCATTTTAGTTTGATCTTTGAAATAACATACCAACCCCTAATTGACTGCTGCAATGTGTTTACTTTACTAAGAGTCGAGTGCGGAATATATTGGTCCATCCGTCACAAAAAGAAATGGCAGGATCAAAGTTAATGATTCAAATCACTCATGATTTCTGACAAAAAGAAATGACAGAATTACGTAAGAGCATAATAACTTTTTATAATATAAATGTTTTGGAAAAATTCTTTCTTGAGAAAACCTATTTGAGTTCCCAAATAGTAATAGTGCAAAATATGGCAGTTAATGCAGCCTTGTTGAAACTATTTTACAACTGTGTGCACTCACTAAGTTTTTGGTCTACAACATTCTGTGACTATCCTCATAAAGTCACAAATACTTGGTACTAAGTTGGTACAGAGACTGATACATGCTCGATGCTTTGTCCTCTGCACTCTTAATTTAAGCTGTACTTCTAAGTTTCATGTTTATGGTCATCCTATCTCAGTTGCTTTCCACTTGTTTTTACAGCTTCTTCACCTGGTTCAGTGAAGTCAATAAAAAAGATGATAGCGATGATGATGAAAATGAGGTTCTGGAGATTCAGGATGAGGTAAAATCTAATTCTTCGGCAATTAATTAAGATTTTTATCTCCCTTCTTTTTGGATGGGAGAAGGGGAGCTTATTTAGGTGTTTTGGTGCATAAAGCTGCTTTTATTTTCAAACTTATACCTTGGTTTTCTGGTTTCCAGGTTGCTGAAATAATCAAGGATGACTTGTGGCCAAACCCTTTAACTTATTTTACCAATGTTAGTTCCATACTGCATCTCTTGTTTCCTTGATCTGTTAATCAAGACTTAGTCGTGCACTTTTAACTAGATAACATTATCTGAGATTTACTAAACCACAGGAACCTGATGAAGAAGATTTTGAGGGTGATGAAGGTGGTGATGAGGTAAAGCAACATTCTTGCTAATAGTTGTCATAACTTGTGCACATCATTTGCTAAACTAAGTCATACTTAGTCATCTGTGGTTCTAATATGTCCTCCTTTTGGGTTTTACATTTATTTCTTTCCTAGGCCCACGTGGCATGAGGGTGAAAGGGCACTTTTGGAAAAAGTTTCTAAATTCTAAGTGCGGCCTTAGTAACTTTAGTTGTAGAATTTAAGTGTTTGACCCTGCTTGGTTGTGGCCTTTGTTGATTTTACTGGCGTTTAAGTCGATTTGTTGTCATTGTGAGTTGAGTTGCTTTTGTTGACTTCAGAATTACATAGTAGCTATGTAGTACAATGGTTTTCTTAAATACTAGGGATAATTTTGTTCCTACCCCCCCCCCCCCCTATCACATCAAGTAGAAAGAGTCTACTCAAGTTTGTAGGTAGTTTCTTCAAGAACTTTCCTTCGTTTACGTATGTCTAAAAGAAGCACATACTGTCAGCATTTGGAAGTTAACAGTTTCAAAGGTCCTTCCAAGTGACTGATATGATTTTACTAAAATCATATAGCTGCAACGCTGTAATATCCTATAGAACATAGAACCTCCTTCATAACTTTCTGCAAGAAATATAGTTCTTTGTGTTTGTGTTGCTTCAGTTTTTAGGTGTTTATCCTACATTTCCATCTTAGTTTTCATGGAAACTTTTTGCTGCTGTATTGTGGGTTAAACCAAAACTTCGTCTACCTTGCATTTTGATGAGAAGTTGGGTGGATATCAAGTTGGGTGTAATAGAAGGCGGAGTTGAGACATGTGAGGGAGAAAAGGGGAAGGTATGGTGAAGGAAGTCCTAGATTGAAGCCTCAAAAAGATGCCATCTTCAAAAGCATCATAAAGGGGGCATAGGGGATTCTTCTATACTTCTAAATACATTTGTGTCAGTACCTTGTTGGTGCTATTCTATGAGAACACGTTAACTTAGTATTAAACAAATGCATAATATAAGGAAGAGGATGAAACCATAGCTTTTGGTTTTATCTTCCAGGATGGTATTGGTTGGGTACTCTGCCTTTCAGAAAATCAAAGTTATCTTTGTTTTTGAAAACAATAAAGTATATATTCTAACAAAGAAATTGTGCTTATTTTCTTACTTTCATCCCTTGGGCCTAGGGAGAGAAGTCTTTTTGGTGGAACGACACTTTTTTGTTTAGGATAAGAGGAAGGAGTGGGTCTTACTGCTGTTTCACTTTCCTAGCCAAATGGAGGTAAAAGTGGGACATGTATGACTCCATCAAGAGTTGGGATCTTCACCGCAGGAAAGAGGAAAGCCTGCTTTGGTTTTAAACTTCGATTTCCAATTCTACCAAACAATATGAGGAGGAAGAAATGCAATTACGTGCAAGTGCCCCTATCTCTTCTTACCTTTCCTCAACTTAAATATTTGGCATTTGACTTGTATTCTGGATACAATGCAGAGATATTTTATGGTATAGAACTTGTTAATTGGGTCTTTTACTGCATGCTCATCATTATTTTTGGAAGATGATAGTACAGTTCTTGATTTTTTAAATGATAATGTCAAAATAAATTGTGTATATGATGCAAAATGAAAGATGTTCTGTTCTGTCTTTGGTTGATTTGATTTGAATTTCTATATGCAGGGGGAGGACTCTGAAGATGAAGGTGATGAGGAGGAAGAGGAAGACGACGAAGATG-AAGATGACAAATGAACTGTTAATGGACCTCATATTTGATTTGATTTCTCTTCTTCAATGTTTCAATTATCATAGTTGGTATCTGTAAAGAAGCTTAATATTGCAGATAAAATCGAATTATATATAGTGGTGACTGCTTTTTTACTACAAAATGAACTTT</genome_strand>
        <mrna_strand>CCTGTTTATGATAAGCGGAATGATATCATTAACTCTATTTCTGACTTCTGGTTGACTGCT.....................................................................................TTTTTGAGTCATCCTGTTCTTGGTGACCTTCTAACTGAAGAGGACCAAAAG.................................................................................................................................................................................ATTTTCAAATTCTTAAGTTCTATTGAAGTGGAAGACTCGAAAGATGTGAAATTTGGTTACTCAATCACGTTT....................................................................................................AACTTTAAGCCCAATCCTTTCTTTGAAAATTCAAAGCTCTCAAAGACCTATACCTTCCTTGAAGATGGACCTACAAAAATCACAGCTACACCAATAAAATGGAAAGAAGGCAAA........................................................................................GGCATTCCTAATGGCGTTGCTCAGGAGAAGAAAGGAAACAAGCGATCCCATGCTGAAGAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTCACCTGGTTCAGTGAAGTCAATAAAAAAGATGATAGCGATGATGATGAAAATGAGGTTCTGGAGATTCAGGATGAG............................................................................................................................................GTTGCTGANATAATCAAGGATGACTTGTGGCCAAACCCTTTAACTTATTTTACCAAT.....................................................................................................GAACCTGATGAAGAAGATTTTGAGGGTGATGAANGTGGTGATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGANGACTCTGAAGATGAANGTGATGANGATGAANAGGAAGACGACGAAGATGAAAGATGAC-AATGAACTGTGTATGGACCTCATATTTGATTTGATTTCTCTTCTTC-ATGTTTCAA-TATCATAGTTGGTATCTGT-AAGAAGCTTAATATTGCAGAT-AAATCGAA-TATATATAGTGGTGACTGCTTTTTTACTACAAAATGAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347378" ref_strand="+" ref_description="SGN-E347378 [cTOF-33-H18]">
      <seq>aacaagcgatcccatgctgaagagagcttcttcacctggttcagtgaagtcaataaaaaagatgatagcgatgatgatgaaaatgaggttctggagattcaggatgaggttgctgaaataatcaaggatgacttgtggccaaaccctttaacttattttaccaatgaacctgatgaagaagattttgagggtgatgaaggtggtgatgagggggaggactctgaagatgaaggtgatgaggaggaagaggaagacgacgaagatgaagatgacaaatgaactgttaatggacctcatatttgatttgatttctcttcttcaatgtttcaattatcatagttggtatctgtaaagaagcttaatattgcagataaaatcgaatntatatatagtggtgactgcttttttactacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19743" stop="23376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20043" g_stop="20068" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20069" i_stop="20799" i_length="731">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20800" g_stop="20881" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="108" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20882" i_stop="21021" i_length="140">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21022" g_stop="21078" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="165" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21079" i_stop="21179" i_length="101">
            <donor d_prob="0.627" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21180" g_stop="21224" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="210" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21225" i_stop="22866" i_length="1642">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22867" g_stop="23079" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="424" r_length="214" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E347378" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20043" e_stop="20068"/>
          <exon e_start="20800" e_stop="20881"/>
          <exon e_start="21022" e_stop="21078"/>
          <exon e_start="21180" e_stop="21224"/>
          <exon e_start="22867" e_stop="23079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGCGATCCCATGCTGAAGAGAGGTCAGCTTACAGATCTAGCATTTCTTAGGACTTCTAATTTTTTGCAAGGCTATTAATTGTTTATAACAAGCCTGTCAACTTGCAACTGATATATTGTTGGAACCTTGGTTTGTACAAGAGAGTAGGTTTGCTCACACATTAAGCCTGGTTATGATCTCTACCTTAGGAACTCAGATTCTGGTACAGCACATTTACTTACTAAATCTCACCTATAACTGGCTCATTTTAGTTTGATCTTTGAAATAACATACCAACCCCTAATTGACTGCTGCAATGTGTTTACTTTACTAAGAGTCGAGTGCGGAATATATTGGTCCATCCGTCACAAAAAGAAATGGCAGGATCAAAGTTAATGATTCAAATCACTCATGATTTCTGACAAAAAGAAATGACAGAATTACGTAAGAGCATAATAACTTTTTATAATATAAATGTTTTGGAAAAATTCTTTCTTGAGAAAACCTATTTGAGTTCCCAAATAGTAATAGTGCAAAATATGGCAGTTAATGCAGCCTTGTTGAAACTATTTTACAACTGTGTGCACTCACTAAGTTTTTGGTCTACAACATTCTGTGACTATCCTCATAAAGTCACAAATACTTGGTACTAAGTTGGTACAGAGACTGATACATGCTCGATGCTTTGTCCTCTGCACTCTTAATTTAAGCTGTACTTCTAAGTTTCATGTTTATGGTCATCCTATCTCAGTTGCTTTCCACTTGTTTTTACAGCTTCTTCACCTGGTTCAGTGAAGTCAATAAAAAAGATGATAGCGATGATGATGAAAATGAGGTTCTGGAGATTCAGGATGAGGTAAAATCTAATTCTTCGGCAATTAATTAAGATTTTTATCTCCCTTCTTTTTGGATGGGAGAAGGGGAGCTTATTTAGGTGTTTTGGTGCATAAAGCTGCTTTTATTTTCAAACTTATACCTTGGTTTTCTGGTTTCCAGGTTGCTGAAATAATCAAGGATGACTTGTGGCCAAACCCTTTAACTTATTTTACCAATGTTAGTTCCATACTGCATCTCTTGTTTCCTTGATCTGTTAATCAAGACTTAGTCGTGCACTTTTAACTAGATAACATTATCTGAGATTTACTAAACCACAGGAACCTGATGAAGAAGATTTTGAGGGTGATGAAGGTGGTGATGAGGTAAAGCAACATTCTTGCTAATAGTTGTCATAACTTGTGCACATCATTTGCTAAACTAAGTCATACTTAGTCATCTGTGGTTCTAATATGTCCTCCTTTTGGGTTTTACATTTATTTCTTTCCTAGGCCCACGTGGCATGAGGGTGAAAGGGCACTTTTGGAAAAAGTTTCTAAATTCTAAGTGCGGCCTTAGTAACTTTAGTTGTAGAATTTAAGTGTTTGACCCTGCTTGGTTGTGGCCTTTGTTGATTTTACTGGCGTTTAAGTCGATTTGTTGTCATTGTGAGTTGAGTTGCTTTTGTTGACTTCAGAATTACATAGTAGCTATGTAGTACAATGGTTTTCTTAAATACTAGGGATAATTTTGTTCCTACCCCCCCCCCCCCCTATCACATCAAGTAGAAAGAGTCTACTCAAGTTTGTAGGTAGTTTCTTCAAGAACTTTCCTTCGTTTACGTATGTCTAAAAGAAGCACATACTGTCAGCATTTGGAAGTTAACAGTTTCAAAGGTCCTTCCAAGTGACTGATATGATTTTACTAAAATCATATAGCTGCAACGCTGTAATATCCTATAGAACATAGAACCTCCTTCATAACTTTCTGCAAGAAATATAGTTCTTTGTGTTTGTGTTGCTTCAGTTTTTAGGTGTTTATCCTACATTTCCATCTTAGTTTTCATGGAAACTTTTTGCTGCTGTATTGTGGGTTAAACCAAAACTTCGTCTACCTTGCATTTTGATGAGAAGTTGGGTGGATATCAAGTTGGGTGTAATAGAAGGCGGAGTTGAGACATGTGAGGGAGAAAAGGGGAAGGTATGGTGAAGGAAGTCCTAGATTGAAGCCTCAAAAAGATGCCATCTTCAAAAGCATCATAAAGGGGGCATAGGGGATTCTTCTATACTTCTAAATACATTTGTGTCAGTACCTTGTTGGTGCTATTCTATGAGAACACGTTAACTTAGTATTAAACAAATGCATAATATAAGGAAGAGGATGAAACCATAGCTTTTGGTTTTATCTTCCAGGATGGTATTGGTTGGGTACTCTGCCTTTCAGAAAATCAAAGTTATCTTTGTTTTTGAAAACAATAAAGTATATATTCTAACAAAGAAATTGTGCTTATTTTCTTACTTTCATCCCTTGGGCCTAGGGAGAGAAGTCTTTTTGGTGGAACGACACTTTTTTGTTTAGGATAAGAGGAAGGAGTGGGTCTTACTGCTGTTTCACTTTCCTAGCCAAATGGAGGTAAAAGTGGGACATGTATGACTCCATCAAGAGTTGGGATCTTCACCGCAGGAAAGAGGAAAGCCTGCTTTGGTTTTAAACTTCGATTTCCAATTCTACCAAACAATATGAGGAGGAAGAAATGCAATTACGTGCAAGTGCCCCTATCTCTTCTTACCTTTCCTCAACTTAAATATTTGGCATTTGACTTGTATTCTGGATACAATGCAGAGATATTTTATGGTATAGAACTTGTTAATTGGGTCTTTTACTGCATGCTCATCATTATTTTTGGAAGATGATAGTACAGTTCTTGATTTTTTAAATGATAATGTCAAAATAAATTGTGTATATGATGCAAAATGAAAGATGTTCTGTTCTGTCTTTGGTTGATTTGATTTGAATTTCTATATGCAGGGGGAGGACTCTGAAGATGAAGGTGATGAGGAGGAAGAGGAAGACGACGAAGATGAAGATGACAAATGAACTGTTAATGGACCTCATATTTGATTTGATTTCTCTTCTTCAATGTTTCAATTATCATAGTTGGTATCTGTAAAGAAGCTTAATATTGCAGATAAAATCGAAT-TATATATAGTGGTGACTGCTTTTTTACTACAAAATGAACTT</genome_strand>
        <mrna_strand>AACAAGCGATCCCATGCTGAAGAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTCACCTGGTTCAGTGAAGTCAATAAAAAAGATGATAGCGATGATGATGAAAATGAGGTTCTGGAGATTCAGGATGAG............................................................................................................................................GTTGCTGAAATAATCAAGGATGACTTGTGGCCAAACCCTTTAACTTATTTTACCAAT.....................................................................................................GAACCTGATGAAGAAGATTTTGAGGGTGATGAAGGTGGTGATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAGGACTCTGAAGATGAAGGTGATGAGGAGGAAGAGGAAGACGACGAAGATGAAGATGACAAATGAACTGTTAATGGACCTCATATTTGATTTGATTTCTCTTCTTCAATGTTTCAATTATCATAGTTGGTATCTGTAAAGAAGCTTAATATTGCAGATAAAATCGAATNTATATATAGTGGTGACTGCTTTTTTACTACAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552805" ref_strand="+" ref_description="SGN-E552805 [cTSB-5-B21]">
      <seq>cctggttcagtgaagtcaataaaaaagatgatagcgatgatgatgaaaatgaggttctggagattcaggatgaggttgctgaaataatcaaggatgacttgtggccaaaccctttaacttattttaccaatgaacctgatgaagaagattttgagggtgatgaaggtggtgatgagggggaggactctgaagatgaaggtgatgaggaggaagaggaagacgacgaagatgaagatgacaaatgaactgttaatggacctcatatttgatttgatttctcttcttcaatgtttcaattatcatagttggtatctgtaaagaagcttaatattgcagataaaatcgaattatatatagtggtgactgcttttttactacaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20508" stop="23376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20808" g_stop="20881" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20882" i_stop="21021" i_length="140">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21022" g_stop="21078" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="131" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21079" i_stop="21179" i_length="101">
            <donor d_prob="0.627" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21180" g_stop="21224" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="176" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21225" i_stop="22866" i_length="1642">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22867" g_stop="23071" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="381" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="382" polyA_stop="403"/>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E552805" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20808" e_stop="20881"/>
          <exon e_start="21022" e_stop="21078"/>
          <exon e_start="21180" e_stop="21224"/>
          <exon e_start="22867" e_stop="23071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGTTCAGTGAAGTCAATAAAAAAGATGATAGCGATGATGATGAAAATGAGGTTCTGGAGATTCAGGATGAGGTAAAATCTAATTCTTCGGCAATTAATTAAGATTTTTATCTCCCTTCTTTTTGGATGGGAGAAGGGGAGCTTATTTAGGTGTTTTGGTGCATAAAGCTGCTTTTATTTTCAAACTTATACCTTGGTTTTCTGGTTTCCAGGTTGCTGAAATAATCAAGGATGACTTGTGGCCAAACCCTTTAACTTATTTTACCAATGTTAGTTCCATACTGCATCTCTTGTTTCCTTGATCTGTTAATCAAGACTTAGTCGTGCACTTTTAACTAGATAACATTATCTGAGATTTACTAAACCACAGGAACCTGATGAAGAAGATTTTGAGGGTGATGAAGGTGGTGATGAGGTAAAGCAACATTCTTGCTAATAGTTGTCATAACTTGTGCACATCATTTGCTAAACTAAGTCATACTTAGTCATCTGTGGTTCTAATATGTCCTCCTTTTGGGTTTTACATTTATTTCTTTCCTAGGCCCACGTGGCATGAGGGTGAAAGGGCACTTTTGGAAAAAGTTTCTAAATTCTAAGTGCGGCCTTAGTAACTTTAGTTGTAGAATTTAAGTGTTTGACCCTGCTTGGTTGTGGCCTTTGTTGATTTTACTGGCGTTTAAGTCGATTTGTTGTCATTGTGAGTTGAGTTGCTTTTGTTGACTTCAGAATTACATAGTAGCTATGTAGTACAATGGTTTTCTTAAATACTAGGGATAATTTTGTTCCTACCCCCCCCCCCCCCTATCACATCAAGTAGAAAGAGTCTACTCAAGTTTGTAGGTAGTTTCTTCAAGAACTTTCCTTCGTTTACGTATGTCTAAAAGAAGCACATACTGTCAGCATTTGGAAGTTAACAGTTTCAAAGGTCCTTCCAAGTGACTGATATGATTTTACTAAAATCATATAGCTGCAACGCTGTAATATCCTATAGAACATAGAACCTCCTTCATAACTTTCTGCAAGAAATATAGTTCTTTGTGTTTGTGTTGCTTCAGTTTTTAGGTGTTTATCCTACATTTCCATCTTAGTTTTCATGGAAACTTTTTGCTGCTGTATTGTGGGTTAAACCAAAACTTCGTCTACCTTGCATTTTGATGAGAAGTTGGGTGGATATCAAGTTGGGTGTAATAGAAGGCGGAGTTGAGACATGTGAGGGAGAAAAGGGGAAGGTATGGTGAAGGAAGTCCTAGATTGAAGCCTCAAAAAGATGCCATCTTCAAAAGCATCATAAAGGGGGCATAGGGGATTCTTCTATACTTCTAAATACATTTGTGTCAGTACCTTGTTGGTGCTATTCTATGAGAACACGTTAACTTAGTATTAAACAAATGCATAATATAAGGAAGAGGATGAAACCATAGCTTTTGGTTTTATCTTCCAGGATGGTATTGGTTGGGTACTCTGCCTTTCAGAAAATCAAAGTTATCTTTGTTTTTGAAAACAATAAAGTATATATTCTAACAAAGAAATTGTGCTTATTTTCTTACTTTCATCCCTTGGGCCTAGGGAGAGAAGTCTTTTTGGTGGAACGACACTTTTTTGTTTAGGATAAGAGGAAGGAGTGGGTCTTACTGCTGTTTCACTTTCCTAGCCAAATGGAGGTAAAAGTGGGACATGTATGACTCCATCAAGAGTTGGGATCTTCACCGCAGGAAAGAGGAAAGCCTGCTTTGGTTTTAAACTTCGATTTCCAATTCTACCAAACAATATGAGGAGGAAGAAATGCAATTACGTGCAAGTGCCCCTATCTCTTCTTACCTTTCCTCAACTTAAATATTTGGCATTTGACTTGTATTCTGGATACAATGCAGAGATATTTTATGGTATAGAACTTGTTAATTGGGTCTTTTACTGCATGCTCATCATTATTTTTGGAAGATGATAGTACAGTTCTTGATTTTTTAAATGATAATGTCAAAATAAATTGTGTATATGATGCAAAATGAAAGATGTTCTGTTCTGTCTTTGGTTGATTTGATTTGAATTTCTATATGCAGGGGGAGGACTCTGAAGATGAAGGTGATGAGGAGGAAGAGGAAGACGACGAAGATGAAGATGACAAATGAACTGTTAATGGACCTCATATTTGATTTGATTTCTCTTCTTCAATGTTTCAATTATCATAGTTGGTATCTGTAAAGAAGCTTAATATTGCAGATAAAATCGAATTATATATAGTGGTGACTGCTTTTTTACTACAAA</genome_strand>
        <mrna_strand>CCTGGTTCAGTGAAGTCAATAAAAAAGATGATAGCGATGATGATGAAAATGAGGTTCTGGAGATTCAGGATGAG............................................................................................................................................GTTGCTGAAATAATCAAGGATGACTTGTGGCCAAACCCTTTAACTTATTTTACCAAT.....................................................................................................GAACCTGATGAAGAAGATTTTGAGGGTGATGAAGGTGGTGATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAGGACTCTGAAGATGAAGGTGATGAGGAGGAAGAGGAAGACGACGAAGATGAAGATGACAAATGAACTGTTAATGGACCTCATATTTGATTTGATTTCTCTTCTTCAATGTTTCAATTATCATAGTTGGTATCTGTAAAGAAGCTTAATATTGCAGATAAAATCGAATTATATATAGTGGTGACTGCTTTTTTACTACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552925" ref_strand="+" ref_description="SGN-E552925 [cTSB-5-H22]">
      <seq>cctggttcagtgaagtcaataaaaaagatgatagcgatgatgatgaaaatgaggttctggagattcaggatgaggttgctgaaataatcaaggatgacttgtggccaaaccctttaacttattttaccaatgaacctgatgaagaagattttgagggtgatgaaggtggtgatgagggggaggactctgaagatgaaggtgatgaggaggaagaggaagacgacgaagatgaagatgacaaatgaactgttaatggacctcatatttgatttgatttctcttcttcaatgtttcaattatcatagttggtatctgtaaagaagcttaatattgcagataaaatcgaattatatatagtggtgactgcttttttactacaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20508" stop="23376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20808" g_stop="20881" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20882" i_stop="21021" i_length="140">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21022" g_stop="21078" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="131" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21079" i_stop="21179" i_length="101">
            <donor d_prob="0.627" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21180" g_stop="21224" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="176" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21225" i_stop="22866" i_length="1642">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22867" g_stop="23071" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="381" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="382" polyA_stop="403"/>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E552925" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20808" e_stop="20881"/>
          <exon e_start="21022" e_stop="21078"/>
          <exon e_start="21180" e_stop="21224"/>
          <exon e_start="22867" e_stop="23071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGTTCAGTGAAGTCAATAAAAAAGATGATAGCGATGATGATGAAAATGAGGTTCTGGAGATTCAGGATGAGGTAAAATCTAATTCTTCGGCAATTAATTAAGATTTTTATCTCCCTTCTTTTTGGATGGGAGAAGGGGAGCTTATTTAGGTGTTTTGGTGCATAAAGCTGCTTTTATTTTCAAACTTATACCTTGGTTTTCTGGTTTCCAGGTTGCTGAAATAATCAAGGATGACTTGTGGCCAAACCCTTTAACTTATTTTACCAATGTTAGTTCCATACTGCATCTCTTGTTTCCTTGATCTGTTAATCAAGACTTAGTCGTGCACTTTTAACTAGATAACATTATCTGAGATTTACTAAACCACAGGAACCTGATGAAGAAGATTTTGAGGGTGATGAAGGTGGTGATGAGGTAAAGCAACATTCTTGCTAATAGTTGTCATAACTTGTGCACATCATTTGCTAAACTAAGTCATACTTAGTCATCTGTGGTTCTAATATGTCCTCCTTTTGGGTTTTACATTTATTTCTTTCCTAGGCCCACGTGGCATGAGGGTGAAAGGGCACTTTTGGAAAAAGTTTCTAAATTCTAAGTGCGGCCTTAGTAACTTTAGTTGTAGAATTTAAGTGTTTGACCCTGCTTGGTTGTGGCCTTTGTTGATTTTACTGGCGTTTAAGTCGATTTGTTGTCATTGTGAGTTGAGTTGCTTTTGTTGACTTCAGAATTACATAGTAGCTATGTAGTACAATGGTTTTCTTAAATACTAGGGATAATTTTGTTCCTACCCCCCCCCCCCCCTATCACATCAAGTAGAAAGAGTCTACTCAAGTTTGTAGGTAGTTTCTTCAAGAACTTTCCTTCGTTTACGTATGTCTAAAAGAAGCACATACTGTCAGCATTTGGAAGTTAACAGTTTCAAAGGTCCTTCCAAGTGACTGATATGATTTTACTAAAATCATATAGCTGCAACGCTGTAATATCCTATAGAACATAGAACCTCCTTCATAACTTTCTGCAAGAAATATAGTTCTTTGTGTTTGTGTTGCTTCAGTTTTTAGGTGTTTATCCTACATTTCCATCTTAGTTTTCATGGAAACTTTTTGCTGCTGTATTGTGGGTTAAACCAAAACTTCGTCTACCTTGCATTTTGATGAGAAGTTGGGTGGATATCAAGTTGGGTGTAATAGAAGGCGGAGTTGAGACATGTGAGGGAGAAAAGGGGAAGGTATGGTGAAGGAAGTCCTAGATTGAAGCCTCAAAAAGATGCCATCTTCAAAAGCATCATAAAGGGGGCATAGGGGATTCTTCTATACTTCTAAATACATTTGTGTCAGTACCTTGTTGGTGCTATTCTATGAGAACACGTTAACTTAGTATTAAACAAATGCATAATATAAGGAAGAGGATGAAACCATAGCTTTTGGTTTTATCTTCCAGGATGGTATTGGTTGGGTACTCTGCCTTTCAGAAAATCAAAGTTATCTTTGTTTTTGAAAACAATAAAGTATATATTCTAACAAAGAAATTGTGCTTATTTTCTTACTTTCATCCCTTGGGCCTAGGGAGAGAAGTCTTTTTGGTGGAACGACACTTTTTTGTTTAGGATAAGAGGAAGGAGTGGGTCTTACTGCTGTTTCACTTTCCTAGCCAAATGGAGGTAAAAGTGGGACATGTATGACTCCATCAAGAGTTGGGATCTTCACCGCAGGAAAGAGGAAAGCCTGCTTTGGTTTTAAACTTCGATTTCCAATTCTACCAAACAATATGAGGAGGAAGAAATGCAATTACGTGCAAGTGCCCCTATCTCTTCTTACCTTTCCTCAACTTAAATATTTGGCATTTGACTTGTATTCTGGATACAATGCAGAGATATTTTATGGTATAGAACTTGTTAATTGGGTCTTTTACTGCATGCTCATCATTATTTTTGGAAGATGATAGTACAGTTCTTGATTTTTTAAATGATAATGTCAAAATAAATTGTGTATATGATGCAAAATGAAAGATGTTCTGTTCTGTCTTTGGTTGATTTGATTTGAATTTCTATATGCAGGGGGAGGACTCTGAAGATGAAGGTGATGAGGAGGAAGAGGAAGACGACGAAGATGAAGATGACAAATGAACTGTTAATGGACCTCATATTTGATTTGATTTCTCTTCTTCAATGTTTCAATTATCATAGTTGGTATCTGTAAAGAAGCTTAATATTGCAGATAAAATCGAATTATATATAGTGGTGACTGCTTTTTTACTACAAA</genome_strand>
        <mrna_strand>CCTGGTTCAGTGAAGTCAATAAAAAAGATGATAGCGATGATGATGAAAATGAGGTTCTGGAGATTCAGGATGAG............................................................................................................................................GTTGCTGAAATAATCAAGGATGACTTGTGGCCAAACCCTTTAACTTATTTTACCAAT.....................................................................................................GAACCTGATGAAGAAGATTTTGAGGGTGATGAAGGTGGTGATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAGGACTCTGAAGATGAAGGTGATGAGGAGGAAGAGGAAGACGACGAAGATGAAGATGACAAATGAACTGTTAATGGACCTCATATTTGATTTGATTTCTCTTCTTCAATGTTTCAATTATCATAGTTGGTATCTGTAAAGAAGCTTAATATTGCAGATAAAATCGAATTATATATAGTGGTGACTGCTTTTTTACTACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30083" stop="31331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30383" g_stop="31031" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30383" e_stop="31031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAAAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30084" stop="31068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30384" g_stop="30768" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30384" e_stop="30768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375077" ref_strand="+" ref_description="SGN-E375077 [TUS-36-E21]">
      <seq>accacttcccatgaatttcaaaaagaattatgtgcatttatatgtaaatgtttatgtgcctacgtgtgaactaaatcttttaaatcatttttcaaaacataactatttttagaccgacctcaaatcaaaattgtttctatggtggaggagcgcgataaataatatcgtggcatcatacctataaagaaacaaacatttttttaaaataaaaattcctattcaaaacttatcaattttcaaactttattttcgcacatattaattgcttaatatttgccaattttgtttataacatagtgtcgtatgtcaaaataaataaaatgagcttaattgtttatttattgccatcacctagctttacatatctaaataaataagaataatagtcttaattgtttcgtatttgttatcacttagtaagattaaataaattaataaacgaccttgattgctacttgtaccctcacatagattgcatgagatatggtcgggacccacacttgtgggcctcgagggatgtctaacaccttcccctcgaggtaatttgaacccttaccctaattctctggctcgttgaccttagttagacatagttaggttagataggtgccttaacgcgccttaatttgttaggtggcgactccaaaactcaaaaatcccagaaaagttgttaggttgtgcacaaaacccgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="-" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48361" stop="30903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31853" g_stop="31156" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="-" ref_id="SGN-E375077" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31853" e_stop="31156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACTTCCCATGAACTTCAAAAAGAATTATGTGCATTTATATGTAATTGTTTATGTGCCTACGTGTGAACTAAATATTTTAAATCATTTGTTAAAAACATAAAT-TTTTTAGACCGACCTCAAATCAAAATTGTTTCTATGGTGGAGGAGCACGATCAATAATATCGTGGCATCATCCCTATAAAGAAATAAACATTTTTAAAAAAAAATAAAAATTCCTATTCATAAACTTATCAATTTT-TAACTTTACTTTTGCACATACTAATTGCTTAATATTTGCCAATTTTGTCTATAACATAGTGTCGTATGTCAAAAATAAATAAAATGAGCTTAATTGTTTATTTATTGTCATCACCTAGCTTTACATATCTAAATAAATAAGAATAATAGTCTTAATTGTTTCGTATTTGTTATCACTTAGTAAGATTAAATAAATTAATAAACGACCTTGATTGCTACTTGTACCCCCACATAGATTGCATGAGATACGGCCGGGACCCACACTTGTGGACCTCGAGGGATGCCTAACACCTTCCCCTCGAGGTAATTTGAACCCTTACCCTAA-TCTCTGGCCCTTTGACTTTAGTTAGACTTAGTTAGGTTAGATAGGTGCCCTAACGCGCCTTAATTCGTTAGGTGGCGACTCCAAAAAACTCGAAATCCCAAAAGAGTTGTTAGGTCGCGCACAAAACCCGTTT</genome_strand>
        <mrna_strand>ACCACTTCCCATGAATTTCAAAAAGAATTATGTGCATTTATATGTAAATGTTTATGTGCCTACGTGTGAACTAAATCTTTTAAATCATTT-TTCAAAACATAACTATTTTTAGACCGACCTCAAATCAAAATTGTTTCTATGGTGGAGGAGCGCGATAAATAATATCGTGGCATCATACCTATAAAGAAACAAACATTTTT---TTAAAATAAAAATTCCTATTCA-AAACTTATCAATTTTCAAACTTTATTTTCGCACATATTAATTGCTTAATATTTGCCAATTTTGTTTATAACATAGTGTCGTATGTC-AAAATAAATAAAATGAGCTTAATTGTTTATTTATTGCCATCACCTAGCTTTACATATCTAAATAAATAAGAATAATAGTCTTAATTGTTTCGTATTTGTTATCACTTAGTAAGATTAAATAAATTAATAAACGACCTTGATTGCTACTTGTACCCTCACATAGATTGCATGAGATATGGTCGGGACCCACACTTGTGGGCCTCGAGGGATGTCTAACACCTTCCCCTCGAGGTAATTTGAACCCTTACCCTAATTCTCTGGCTCGTTGACCTTAGTTAGACATAGTTAGGTTAGATAGGTGCCTTAACGCGCCTTAATTTGTTAGGTGGCGACTCCAAAACTC-AAAAATCCCAGAAAAGTTGTTAGGTTGTGCACAAAACCCGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231645" ref_strand="+" ref_description="SGN-E231645 [cLED-4-M9]">
      <seq>accacttcccatgaatttcaaaaagaattatgtgcatttatatgtaaatgtttatgtgcctacgtgtgaactaaatcttttaaatcatttttcaaaacataactatttttagaccgacctcaaatcaaaattgtttctatggtggaggagcgcgataaataatatcgtggcatcatacctataaagaaacaaacatttttttaaaataaaaattcctattcaaaacttatcaattttcaaactttattttcgcacatattaattgcttaatatttgccaattttgtttataacatagtgtcgtatgtcaaaataaataaaatgagcttaattgtttatttattgccatcacctagctttacatatctaaataaataagaataatagtcttaattgtttcgtatttgttatcacttagtaagattaaataaattaataaacgaccttgattgctacttgtaccctcacatagattgcatgagatatggtcgggacccacacttgtgggcctcgagggatgtctaacaccttcccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="-" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48361" stop="31015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31853" g_stop="31315" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="-" ref_id="SGN-E231645" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31853" e_stop="31315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACTTCCCATGAACTTCAAAAAGAATTATGTGCATTTATATGTAATTGTTTATGTGCCTACGTGTGAACTAAATATTTTAAATCATTTGTTAAAAACATAAAT-TTTTTAGACCGACCTCAAATCAAAATTGTTTCTATGGTGGAGGAGCACGATCAATAATATCGTGGCATCATCCCTATAAAGAAATAAACATTTTTAAAAAAAAATAAAAATTCCTATTCATAAACTTATCAATTTT-TAACTTTACTTTTGCACATACTAATTGCTTAATATTTGCCAATTTTGTCTATAACATAGTGTCGTATGTCAAAAATAAATAAAATGAGCTTAATTGTTTATTTATTGTCATCACCTAGCTTTACATATCTAAATAAATAAGAATAATAGTCTTAATTGTTTCGTATTTGTTATCACTTAGTAAGATTAAATAAATTAATAAACGACCTTGATTGCTACTTGTACCCCCACATAGATTGCATGAGATACGGCCGGGACCCACACTTGTGGACCTCGAGGGATGCCTAACACCTTCCCCT</genome_strand>
        <mrna_strand>ACCACTTCCCATGAATTTCAAAAAGAATTATGTGCATTTATATGTAAATGTTTATGTGCCTACGTGTGAACTAAATCTTTTAAATCATTT-TTCAAAACATAACTATTTTTAGACCGACCTCAAATCAAAATTGTTTCTATGGTGGAGGAGCGCGATAAATAATATCGTGGCATCATACCTATAAAGAAACAAACATTTTT---TTAAAATAAAAATTCCTATTCA-AAACTTATCAATTTTCAAACTTTATTTTCGCACATATTAATTGCTTAATATTTGCCAATTTTGTTTATAACATAGTGTCGTATGTC-AAAATAAATAAAATGAGCTTAATTGTTTATTTATTGCCATCACCTAGCTTTACATATCTAAATAAATAAGAATAATAGTCTTAATTGTTTCGTATTTGTTATCACTTAGTAAGATTAAATAAATTAATAAACGACCTTGATTGCTACTTGTACCCTCACATAGATTGCATGAGATATGGTCGGGACCCACACTTGTGGGCCTCGAGGGATGTCTAACACCTTCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236361" ref_strand="+" ref_description="SGN-E236361 [cLED-13-O11]">
      <seq>accacttcccatgaatttcaaaaagaattatgtgcatttatatgtaaatgtttatgtgcctacgtgtgaactaaatcttttaaatcatttttcaaaacataactatttttagaccgacctcaaatcaaaattgtttctatggtggaggagcgcgataaataatatcgtggcatcatacctataaagaaacaaacatttttttaaaataaaaattcctattcaaaacttatcaattttcaaactttattttcgcacatattaattgcttaatatttgccaattttgtttataacatagtgtcgtatgtcaaaataaataaaatgagcttaattgtttatttattgccatcacctagctttacatatctaaataaataagaataatagtcttaattgtttcgtatttggtatcacttagtaagattaaataaattaataaacgaccttgattgctacttgtaccctcacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="-" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48361" stop="31081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31853" g_stop="31381" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="-" ref_id="SGN-E236361" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31853" e_stop="31381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACTTCCCATGAACTTCAAAAAGAATTATGTGCATTTATATGTAATTGTTTATGTGCCTACGTGTGAACTAAATATTTTAAATCATTTGTTAAAAACATAAAT-TTTTTAGACCGACCTCAAATCAAAATTGTTTCTATGGTGGAGGAGCACGATCAATAATATCGTGGCATCATCCCTATAAAGAAATAAACATTTTTAAAAAAAAATAAAAATTCCTATTCATAAACTTATCAATTTT-TAACTTTACTTTTGCACATACTAATTGCTTAATATTTGCCAATTTTGTCTATAACATAGTGTCGTATGTCAAAAATAAATAAAATGAGCTTAATTGTTTATTTATTGTCATCACCTAGCTTTACATATCTAAATAAATAAGAATAATAGTCTTAATTGTTTCGTATTTGTTATCACTTAGTAAGATTAAATAAATTAATAAACGACCTTGATTGCTACTTGTACCCCCACAT</genome_strand>
        <mrna_strand>ACCACTTCCCATGAATTTCAAAAAGAATTATGTGCATTTATATGTAAATGTTTATGTGCCTACGTGTGAACTAAATCTTTTAAATCATTT-TTCAAAACATAACTATTTTTAGACCGACCTCAAATCAAAATTGTTTCTATGGTGGAGGAGCGCGATAAATAATATCGTGGCATCATACCTATAAAGAAACAAACATTTTT---TTAAAATAAAAATTCCTATTCA-AAACTTATCAATTTTCAAACTTTATTTTCGCACATATTAATTGCTTAATATTTGCCAATTTTGTTTATAACATAGTGTCGTATGTC-AAAATAAATAAAATGAGCTTAATTGTTTATTTATTGCCATCACCTAGCTTTACATATCTAAATAAATAAGAATAATAGTCTTAATTGTTTCGTATTTGGTATCACTTAGTAAGATTAAATAAATTAATAAACGACCTTGATTGCTACTTGTACCCTCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231013" ref_strand="+" ref_description="SGN-E231013 [cLED-5-I16]">
      <seq>tatgtaaatgtttatgtgcctacgtgtgaactaaatcttttaaatcatttttcaaaacataactatttttagaccgacctcaaatcaaaattgtttctatggtggaggagcgcgataaataatatcgtggcatcatacctataaagaaacaaacatttttttaaaataaaaattcctattcaaaacttatcaattttcaaactttattttcgcacatattaattgcttaatatttgccaattttgtttataacatagtgtcgtatgtcaaaataaataaaatgagcttaattgtttatttattgccatcacctagctttacatatctaaataaataagaataata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="-" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48321" stop="31165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31813" g_stop="31465" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="-" ref_id="SGN-E231013" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31813" e_stop="31465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGTAATTGTTTATGTGCCTACGTGTGAACTAAATATTTTAAATCATTTGTTAAAAACATAAAT-TTTTTAGACCGACCTCAAATCAAAATTGTTTCTATGGTGGAGGAGCACGATCAATAATATCGTGGCATCATCCCTATAAAGAAATAAACATTTTTAAAAAAAAATAAAAATTCCTATTCATAAACTTATCAATTTT-TAACTTTACTTTTGCACATACTAATTGCTTAATATTTGCCAATTTTGTCTATAACATAGTGTCGTATGTCAAAAATAAATAAAATGAGCTTAATTGTTTATTTATTGTCATCACCTAGCTTTACATATCTAAATAAATAAGAATAATA</genome_strand>
        <mrna_strand>TATGTAAATGTTTATGTGCCTACGTGTGAACTAAATCTTTTAAATCATTT-TTCAAAACATAACTATTTTTAGACCGACCTCAAATCAAAATTGTTTCTATGGTGGAGGAGCGCGATAAATAATATCGTGGCATCATACCTATAAAGAAACAAACATTTTT---TTAAAATAAAAATTCCTATTCA-AAACTTATCAATTTTCAAACTTTATTTTCGCACATATTAATTGCTTAATATTTGCCAATTTTGTTTATAACATAGTGTCGTATGTC-AAAATAAATAAAATGAGCTTAATTGTTTATTTATTGCCATCACCTAGCTTTACATATCTAAATAAATAAGAATAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221006" ref_strand="+" ref_description="SGN-E221006 [cLEL-22-J8](-)">
      <seq>tctcattgctctcttgctactttaaacaatatattaatatttcggcaaatattcaagtgcttttctccgctattttcctgctttgttcgagtacaaggtgaatcattttgttttgtttaacaggtttcatatttgaagttccagttgaagattaactgaaaaaggatttgtttatttgtttgaatgtatatatgtctatatattttattttttccgctattttatttattcgaatgttgtaacaattgtaaccctaagatcatataataaagttatttgggggtcgtctaggggagggggatttatatgcttacttgctcattatttttttttttagaaatcatgcctataggtttgtctttaaccacctagatttgatatttgtaggtgttataatctaatcaattttcaatttgcttgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="-" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49349" stop="32124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32841" g_stop="32423" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="423" polyA_stop="438"/>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="-" ref_id="SGN-E221006" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32841" e_stop="32423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATTGCTCTCTTGCTACTTTAAACAATATATTAATATTTCGGCAAATATTCAAGTGCTTTTCTCCGCTATTTTCCTGCTTTGTTCGAGTACAAGGTGAATCATTTTGTTTTGTTTAACAGGTTTCATATTTGAAGTTCAAGTTGAAGATTAACTGAAGAAGGATTTGTTTATTTGTTTGAATGTATATATGTCTATATATTTTATTTTTTCCGCTATTTTATTTATTCGAATGTTGTAACAATTGTAACCCTAAGATCATATAATAAAGTTATTTGGGGGTCGTCTAGGGGAGGGGGATTTATATGCGTACTTGCTCATTA---TTTTTTTTAGAAATCATGCCTATAGGTTTGTCTTTAACCACCTAGATTTGATATTTGTAGGTGTTATAATCTAATCAATTTTCAATTTGCTTGAC</genome_strand>
        <mrna_strand>TCTCATTGCTCTCTTGCTACTTTAAACAATATATTAATATTTCGGCAAATATTCAAGTGCTTTTCTCCGCTATTTTCCTGCTTTGTTCGAGTACAAGGTGAATCATTTTGTTTTGTTTAACAGGTTTCATATTTGAAGTTCCAGTTGAAGATTAACTGAAAAAGGATTTGTTTATTTGTTTGAATGTATATATGTCTATATATTTTATTTTTTCCGCTATTTTATTTATTCGAATGTTGTAACAATTGTAACCCTAAGATCATATAATAAAGTTATTTGGGGGTCGTCTAGGGGAGGGGGATTTATATGCTTACTTGCTCATTATTTTTTTTTTTAGAAATCATGCCTATAGGTTTGTCTTTAACCACCTAGATTTGATATTTGTAGGTGTTATAATCTAATCAATTTTCAATTTGCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E220877" ref_strand="+" ref_description="SGN-E220877 [cLEL-22-L24](-)">
      <seq>tttattttttccgctattttatttaatcaaaatgttgtaacaattgtaaccctaagatcatataataaagttatttgggggtcgtctaggggaaagggatttatatgcttacctgctcattatttttttttttagaaatcatgcctataggtttgtctttaaccacctagatttgatatttgtaggtgttataatctaatcaattttcaatttgcttgcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="-" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49146" stop="32125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32638" g_stop="32425" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="220" polyA_stop="236"/>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="-" ref_id="SGN-E220877" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>214</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32638" e_stop="32425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTTTTTCCGCTATTTTATTTATTC-GAATGTTGTAACAATTGTAACCCTAAGATCATATAATAAAGTTATTTGGGGGTCGTCTAGGGGAGGGGGATTTATATGCGTACTTGCTCATTA---TTTTTTTTAGAAATCATGCCTATAGGTTTGTCTTTAACCACCTAGATTTGATATTTGTAGGTGTTATAATCTAATCAATTTTCAATTTGCTTG</genome_strand>
        <mrna_strand>TTTATTTTTTCCGCTATTTTATTTAATCAAAATGTTGTAACAATTGTAACCCTAAGATCATATAATAAAGTTATTTGGGGGTCGTCTAGGGGAAAGGGATTTATATGCTTACCTGCTCATTATTTTTTTTTTTAGAAATCATGCCTATAGGTTTGTCTTTAACCACCTAGATTTGATATTTGTAGGTGTTATAATCTAATCAATTTTCAATTTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577845" ref_strand="+" ref_description="SGN-E577845 [LE08AD04]">
      <seq>actcctttatttgaattaaaacttgatagaaaaacatcttccaaggctacccagatactcgacaaggtctggatggagtcgaggtccagttgctgacgctgatctttgcctccttgcttccactagggccccctttctcctcctcgttgatcacgacgttgcaaactttcccttcttctttggttagcgataaccccttcaagtcgtctgagatctcatcaatattgtctcccatgaaacctgctaatcgaaatgattgatacaatggcggtatgggtttcttcaatggatagtagtacccatctctaggtggtcgccaatcgagccattcttcggtggtgtatttataacccaaaccaaaagtggtggaatgtcgaacaggctgtataggttcgactatcccttgtaatttagcccccaaacctttcccaagctcgaaaccgaaccaggccatcatatctatgattttttggctgaaccaaggttgcaactcaatattaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41264" stop="42365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41564" g_stop="42065" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E577845" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41564" e_stop="42065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCTTTATTTGAATTAAAATTTGATAGAAAAACATCTTCCAAAGCTACCCAGATGCTCGACGAGGTCTGGATGGAGTCGAGGTCCAGTTGCTGACGCTGATCTTTGCCTCTTTGCTTCCACTAGGGCCCCCTTTCTCCTCCTCGTTGATCACGACGTTGCAAACTTTCCCTTCTTCTTTGGTTAGCGATAACCCCTTCAAGTCGTCTGAGATCTCATCAATATTGTCTCCCATGAAACCTGCTGATCGAAATGATTGATACAATGGCGGTATGGGTTTCTTCAATGGATAGTAGTACCCATCTCTAGGTGGTCGCCAATCGAGCCATTCTTCGGTGGTGTATTTATAACCCAAACCAAAAGTGGTGGAATGTCGAACAGGCTGTATAGGTTCGACTATCCCTTGTAATTTAGCCCCCAAACCTTTCCCAAGCTCGAAACCGAACCAGGCCATCATATCTATGATTTTTTGGCTGAACCAAGGTTGCAACTCAATATTACC</genome_strand>
        <mrna_strand>ACTCCTTTATTTGAATTAAAACTTGATAGAAAAACATCTTCCAAGGCTACCCAGATACTCGACAAGGTCTGGATGGAGTCGAGGTCCAGTTGCTGACGCTGATCTTTGCCTCCTTGCTTCCACTAGGGCCCCCTTTCTCCTCCTCGTTGATCACGACGTTGCAAACTTTCCCTTCTTCTTTGGTTAGCGATAACCCCTTCAAGTCGTCTGAGATCTCATCAATATTGTCTCCCATGAAACCTGCTAATCGAAATGATTGATACAATGGCGGTATGGGTTTCTTCAATGGATAGTAGTACCCATCTCTAGGTGGTCGCCAATCGAGCCATTCTTCGGTGGTGTATTTATAACCCAAACCAAAAGTGGTGGAATGTCGAACAGGCTGTATAGGTTCGACTATCCCTTGTAATTTAGCCCCCAAACCTTTCCCAAGCTCGAAACCGAACCAGGCCATCATATCTATGATTTTTTGGCTGAACCAAGGTTGCAACTCAATATTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30742" stop="52273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51166" g_stop="51973" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51166" e_stop="51973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTAAAAATTCTA-AAATTTAAAAT-ACATATTTAATCGAATAGTATTTCTAAAAAGTTCAAAGGTCGGTCAAAATTGGGTGTCAACAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCCTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGCGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGA-AGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTG-GTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746334" ref_strand="+" ref_description="SGN-E746334 [GI|47104720]">
      <seq>aaaagtttgtttttttttgtgaaaatttagttattaagagtgatcatggaaggaggaggaggtgacgatcatctccaccatcaccatcacaatcaccagcaccaccaacatcaccagcaatatcgtcctaacaacttccctttccaattactcgaaaaaaaagaagacgaaccttgctccagctcctccgcagctaataatattaattatccttcgctagccatttccccatccgatacaaatacgaatataaaccctaatagtaacgaccttcaaattacagttgcctctactgagactgctaaaaagccagctcccaagagaacttccactaaagaccgccacactaaggttgatggccgtggcagacgtatacgtatgccggccctttgtgctgctagggtttttcagctcactcgagaactcggtcacaaatccgatggtgaaaccatcgaatggcttcttcaacaagctgaacctgcagttatagctgctacgggaacaggtacaattccggcgaatttcacgtcactcaacatttcattacgtagttcaggatccagcatgtccgtaccatctcaacttcgatcttcgtatttcaatccgaatttttcactgtcccaaaggcgcagtttgtttcagggtatcggtttatcatcagacagatctgcaactacaacgttgctgaattttcagacgggtaattcgaacctccatcaattccaagctaaacaagaaatgcgagacaattcgttagatttaacagaaacaagtatagaagagagtctatcgcgaaaaaggcgacaagacctcgatttacaacaagaacaacaacaaaatcagcagcagcaaaacgagcaacaaatgggaagttatttgttacaatcatcaagtagtgggactatgccaactagtcattcttcaattccagctaacttttggatgttgacgaataataatacccaagtattgggaggcgatccagtgtggacgtttccatcggttaacaactctggtgctgcagctgctgctttgtatagaagtacaatgtcaagtggattacatttcatgaattttcctactcctgtagcactattgccaactcagcaatttggcgctggtagtaatggcagtacactagccggagaaggccaattaggcatggtcaccggattaaatccgtatagaccatgttccggtgtatcggaatctcaggctagtggatcacattcacatcacggtggtggtggaggtggtgatgatcgtcatgattcaacaagccatcataattcctaaaaagaagttgagtttttgtgtgataaattaaaaagtttgggatggttaattaaacacacaatacgtgaggtttgattatatgcttgctctataattttgaatttgcttctattattattattttcacctcttctttttttgtgtgattaatatttgcctgccggtttttttagggtttgaagagggaaatatattttttattttattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60843" stop="63144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61143" g_stop="61647" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61648" i_stop="61841" i_length="194">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61842" g_stop="62844" g_length="1003"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="1508" r_length="1003" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1509" polyA_stop="1521"/>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E746334" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1508</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61143" e_stop="61647"/>
          <exon e_start="61842" e_stop="62844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTGTTTTTTTTTGTGAAAATTTAGTTATTAAGAGTGATCATGGAAGGAGGAGGAGGTGACGATCATCTCCACCATCACCATCACAATCACCAGCACCACCAACATCACCAGCAATATCGTCCTAACAACTTCCCTTTCCAATTACTCGAAAAAAAAGAAGACGAACCTTGCTCCAGCTCCTCCGCAGCTAATAATATTAATTATCCTTCGCTAGCCATTTCCCCATCCGATACAAATACGAATATAAACCCTAATAGTAACGACCTTCAAATTACAGTTGCCTCTACTGAGACTGCTAAAAAGCCAGCTCCCAAGAGAACTTCCACTAAAGACCGCCACACTAAGGTTGATGGCCGTGGCAGACGTATACGTATGCCGGCCCTTTGTGCTGCTAGGGTTTTTCAGCTCACTCGAGAACTCGGTCACAAATCCGATGGTGAAACCATCGAATGGCTTCTTCAACAAGCTGAACCTGCAGTTATAGCTGCTACGGGAACAGGTAATGCTGAAAAAGTCATTCAAAACTAATAGTTATTATCTCAGAAAGTCATTATTTTCCTCATTCCAACTTATTGTCTGAAATAGTAATAACTATTAGTTGAGAAACCAATCAAACTCAGAATAATTCTAAAGTTTTCCTATTTTTCACAATTTGCTTAATTATCATTTGTTACTATGGTTCAAATCTTACAGGTACAATTCCGGCGAATTTCACGTCACTCAACATTTCATTACGTAGTTCAGGATCCAGCATGTCCGTACCATCTCAACTTCGATCTTCGTATTTCAATCCGAATTTTTCACTGTCCCAAAGGCGCAGTTTGTTTCAGGGTATCGGTTTATCATCAGACAGATCTGCAACTACAACGTTGCTGAATTTTCAGACGGGTAATTCGAACCTCCATCAATTCCAAGCTAAACAAGAAATGCGAGACAATTCGTTAGATTTAACAGAAACAAGTATAGAAGAGAGTCTATCGCGAAAAAGGCGACAAGACCTCGATTTACAACAAGAACAACAACAAAATCAGCAGCAGCAAAACGAGCAACAAATGGGAAGTTATTTGTTACAATCATCAAGTAGTGGGACTATGCCAACTAGTCATTCTTCAATTCCAGCTAACTTTTGGATGTTGACGAATAATAATACCCAAGTATTGGGAGGCGATCCAGTGTGGACGTTTCCATCGGTTAACAACTCTGGTGCTGCAGCTGCTGCTTTGTATAGAAGTACAATGTCAAGTGGATTACATTTCATGAATTTTCCTACTCCTGTAGCACTATTGCCAACTCAGCAATTTGGCGCTGGTAGTAATGGCAGTACACTAGCCGGAGAAGGCCAATTAGGCATGGTCACCGGATTAAATCCGTATAGACCATGTTCCGGTGTATCGGAATCTCAGGCTAGTGGATCACATTCACATCACGGTGGTGGTGGAGGTGGTGATGATCGTCATGATTCAACAAGCCATCATAATTCCTAAAAAGAAGTTGAGTTTTTGTGTGATAAATTAAAAAGTTTGGGATGGTTAATTAAACACACAATACGTGAGGTTTGATTATATGCTTGCTCTATAATTTTGAATTTGCTTCTATTATTATTATTTTCACCTCTTCTTTTTTTGTGTGATTAATATTTGCCTGCCGGTTTTTTTAGGGTTTGAAGAGGGAAATATATTTTTTATTTTATTACAAA</genome_strand>
        <mrna_strand>AAAAGTTTGTTTTTTTTTGTGAAAATTTAGTTATTAAGAGTGATCATGGAAGGAGGAGGAGGTGACGATCATCTCCACCATCACCATCACAATCACCAGCACCACCAACATCACCAGCAATATCGTCCTAACAACTTCCCTTTCCAATTACTCGAAAAAAAAGAAGACGAACCTTGCTCCAGCTCCTCCGCAGCTAATAATATTAATTATCCTTCGCTAGCCATTTCCCCATCCGATACAAATACGAATATAAACCCTAATAGTAACGACCTTCAAATTACAGTTGCCTCTACTGAGACTGCTAAAAAGCCAGCTCCCAAGAGAACTTCCACTAAAGACCGCCACACTAAGGTTGATGGCCGTGGCAGACGTATACGTATGCCGGCCCTTTGTGCTGCTAGGGTTTTTCAGCTCACTCGAGAACTCGGTCACAAATCCGATGGTGAAACCATCGAATGGCTTCTTCAACAAGCTGAACCTGCAGTTATAGCTGCTACGGGAACAG..................................................................................................................................................................................................GTACAATTCCGGCGAATTTCACGTCACTCAACATTTCATTACGTAGTTCAGGATCCAGCATGTCCGTACCATCTCAACTTCGATCTTCGTATTTCAATCCGAATTTTTCACTGTCCCAAAGGCGCAGTTTGTTTCAGGGTATCGGTTTATCATCAGACAGATCTGCAACTACAACGTTGCTGAATTTTCAGACGGGTAATTCGAACCTCCATCAATTCCAAGCTAAACAAGAAATGCGAGACAATTCGTTAGATTTAACAGAAACAAGTATAGAAGAGAGTCTATCGCGAAAAAGGCGACAAGACCTCGATTTACAACAAGAACAACAACAAAATCAGCAGCAGCAAAACGAGCAACAAATGGGAAGTTATTTGTTACAATCATCAAGTAGTGGGACTATGCCAACTAGTCATTCTTCAATTCCAGCTAACTTTTGGATGTTGACGAATAATAATACCCAAGTATTGGGAGGCGATCCAGTGTGGACGTTTCCATCGGTTAACAACTCTGGTGCTGCAGCTGCTGCTTTGTATAGAAGTACAATGTCAAGTGGATTACATTTCATGAATTTTCCTACTCCTGTAGCACTATTGCCAACTCAGCAATTTGGCGCTGGTAGTAATGGCAGTACACTAGCCGGAGAAGGCCAATTAGGCATGGTCACCGGATTAAATCCGTATAGACCATGTTCCGGTGTATCGGAATCTCAGGCTAGTGGATCACATTCACATCACGGTGGTGGTGGAGGTGGTGATGATCGTCATGATTCAACAAGCCATCATAATTCCTAAAAAGAAGTTGAGTTTTTGTGTGATAAATTAAAAAGTTTGGGATGGTTAATTAAACACACAATACGTGAGGTTTGATTATATGCTTGCTCTATAATTTTGAATTTGCTTCTATTATTATTATTTTCACCTCTTCTTTTTTTGTGTGATTAATATTTGCCTGCCGGTTTTTTTAGGGTTTGAAGAGGGAAATATATTTTTTATTTTATTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265357" ref_strand="+" ref_description="SGN-E265357 [cLEI-9-N14]">
      <seq>agtttgtttttttttgtgaaaatttagttattaagagtgatcatggaaggaggaggaggtgacgatcatctccaccatcaccatcacaatcaccagcaccaccaacatcaccagcaatatcgtcctaacaacttccctttccaattactcgaaaaaaaagaagacgaaccttgctccagctcctccgcagctaataatattaattatccttcgctagccatttccccatccgatacaaatacgaatataaaccctaatagtaacgaccttcaaattacagttgcctctactgagactgctaaaaagccagctcccaagagaacttccactaaagaccgccacactaaggttgatggccgtggcagacgtatacgtatgccggccctttgtgctgctagggtttttcagctcactcgagaactcggtcacaaatccgatggtgaaaccatcgaatggcttcttcaacaagctgaacctgcagttatagctgctacgggaacaggtacaattccggcgaatttcacgtcactcaacatttcattacgtagttcaggatccagcatgtccgtaccatctcaacttcgatcttcgtatttcaatccgaatttttcactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60846" stop="62255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61146" g_stop="61647" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61648" i_stop="61841" i_length="194">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61842" g_stop="61955" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="616" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E265357" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61146" e_stop="61647"/>
          <exon e_start="61842" e_stop="61955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGTTTTTTTTTGTGAAAATTTAGTTATTAAGAGTGATCATGGAAGGAGGAGGAGGTGACGATCATCTCCACCATCACCATCACAATCACCAGCACCACCAACATCACCAGCAATATCGTCCTAACAACTTCCCTTTCCAATTACTCGAAAAAAAAGAAGACGAACCTTGCTCCAGCTCCTCCGCAGCTAATAATATTAATTATCCTTCGCTAGCCATTTCCCCATCCGATACAAATACGAATATAAACCCTAATAGTAACGACCTTCAAATTACAGTTGCCTCTACTGAGACTGCTAAAAAGCCAGCTCCCAAGAGAACTTCCACTAAAGACCGCCACACTAAGGTTGATGGCCGTGGCAGACGTATACGTATGCCGGCCCTTTGTGCTGCTAGGGTTTTTCAGCTCACTCGAGAACTCGGTCACAAATCCGATGGTGAAACCATCGAATGGCTTCTTCAACAAGCTGAACCTGCAGTTATAGCTGCTACGGGAACAGGTAATGCTGAAAAAGTCATTCAAAACTAATAGTTATTATCTCAGAAAGTCATTATTTTCCTCATTCCAACTTATTGTCTGAAATAGTAATAACTATTAGTTGAGAAACCAATCAAACTCAGAATAATTCTAAAGTTTTCCTATTTTTCACAATTTGCTTAATTATCATTTGTTACTATGGTTCAAATCTTACAGGTACAATTCCGGCGAATTTCACGTCACTCAACATTTCATTACGTAGTTCAGGATCCAGCATGTCCGTACCATCTCAACTTCGATCTTCGTATTTCAATCCGAATTTTTCACTGT</genome_strand>
        <mrna_strand>AGTTTGTTTTTTTTTGTGAAAATTTAGTTATTAAGAGTGATCATGGAAGGAGGAGGAGGTGACGATCATCTCCACCATCACCATCACAATCACCAGCACCACCAACATCACCAGCAATATCGTCCTAACAACTTCCCTTTCCAATTACTCGAAAAAAAAGAAGACGAACCTTGCTCCAGCTCCTCCGCAGCTAATAATATTAATTATCCTTCGCTAGCCATTTCCCCATCCGATACAAATACGAATATAAACCCTAATAGTAACGACCTTCAAATTACAGTTGCCTCTACTGAGACTGCTAAAAAGCCAGCTCCCAAGAGAACTTCCACTAAAGACCGCCACACTAAGGTTGATGGCCGTGGCAGACGTATACGTATGCCGGCCCTTTGTGCTGCTAGGGTTTTTCAGCTCACTCGAGAACTCGGTCACAAATCCGATGGTGAAACCATCGAATGGCTTCTTCAACAAGCTGAACCTGCAGTTATAGCTGCTACGGGAACAG..................................................................................................................................................................................................GTACAATTCCGGCGAATTTCACGTCACTCAACATTTCATTACGTAGTTCAGGATCCAGCATGTCCGTACCATCTCAACTTCGATCTTCGTATTTCAATCCGAATTTTTCACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547444" ref_strand="+" ref_description="SGN-E547444 [TUS-71-F7](-)">
      <seq>aggttgtctacctggatgagccgagtactggacttgatccagcttcaagagataccttatggactgttgtgaagaatgcacggaaaggcagagcgataattctcactacccattcaatggaagaagcggattatttatgtgatcgcttaggaatcttcgttgatggaagcttgcaatgcatagcaaattcatcagagttgaagacaagatatggagggtcttacgtgctcgcgataactacatcagctgataatgaggtggaagtggagaaaatggtgcgacagatatgcccaaatgccaacaaagtgtatcatttatcaggtacacagaagttcgagttgccaaaacatgaatcgaaaattgcagatgtatttcaactagttgagaatgcaaagagtagatttccaatttatgcttggggtatggctgatacaactttagaggatgtttttatcaaggttgctgcttgtgctcaatcctttaatgaagcatgatcataacattcaaccacaaattcgaaggaaaaaaaaaagaaagaaggatcatatgtgcataatgtttttttttttgccttaattaggaaatatttaggttcatgtagatatatcaagtacagagcaaatgtgactcctattttgtcatgtaaattgtgtacaatgatgccaatctctggcgttttgttcgtggaatagaaagagtttgttgtatcaacgtatttaaaaaaaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="-" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78596" stop="65536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78296" g_stop="78189" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78188" i_stop="78013" i_length="176">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78012" g_stop="77924" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="197" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77923" i_stop="77832" i_length="92">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.943" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77831" g_stop="77313" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="719" r_length="522" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77312" i_stop="75577" i_length="1736">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75576" g_stop="75544" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="750" r_length="31" r_score="0.697"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="-" ref_id="SGN-E547444" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78296" e_stop="78189"/>
          <exon e_start="78012" e_stop="77924"/>
          <exon e_start="77831" e_stop="77313"/>
          <exon e_start="75576" e_stop="75544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTGTCTACCTGGATGAGCCGAGTACTGGACTTGATCCAGCTTCAAGAGATACCTTATGGACTGTTGTGAAGAATGCACGGAAAGGCAGAGCGATAATTCTCACTAGTAAATCTACTTTCCATCTCTAGTTCCATTGTTTTTCCATTTCGACATGAATAAACACTACTGCATCGACTTACTCATCGAAATGCATAATCTTGAATGTAATTAAGGAAATGGTATAATTATTTGGGTATGTTGTTGTTGTATGCTTACTAACAAAGATACTAATTTAATTTCAGCCCATTCAATGGAAGAAGCGGATTATTTATGTGATCGCTTAGGAATCTTCGTTGATGGAAGCTTGCAATGCATAGCGAATTCATCAGAGGTAATTTCAAGCTTTTACACAAACAATGATAATTCCAATTTTGAACTCAGGGATTGTTATGAGAGTTATTTTCTGCTCTGTATTATCCACAGTTGAAGACAAGATATGGAGGGTCTTATGTGCTCGCGATAACTACATCAGCTGATAATGAGGTGGAAGTGGAGAAAATGGTGCGACAGATATGCCCAAATGCCAACAAAGTGTATCATTTATCAGGTACACAGAAGTTCGAGTTGCCAAAACATGAATCGAAAATTGCAGATGTATTTCAACTAGTTGAGAATGCAAAGAGTAGATTTCCAATTTATGCTTGGGGTATGGCTGATACAACTTTAGAGGATGTTTTTATCAAGGTTGCTTCTTGTGCTCAATCCTTTAATGAAGCATGATCATAACATTCAACCACAAATTAGAAGG-GAAAAAAAA-AAAGAAGGATCATATGTGCATAATG-TTTTTTTTTTGCCTTAATTAGGAAATATTTAGGTTCATGTAGATATATCAAGTACAGAGCATATGTGACTCCTATTTTGTCATGTAAATTGTGTACAATGATGCCAATCTCTGGCGTTTTGTTCGTGGAATAGAAAGAGTTTGTTGTATCAACGTATTTAATTGAAACCTCCATTGCCGTTGAGAGATTTAGTTTTACAAAATAACCAGTAAACGTAACTAATGTTTACCAAGTAAACAATTCAGTACAAAACTCCTTGAGCTACAACCCTCATTTTACCCCAATCAAACAAAATCAACTATCTCCTATACATAGCAAGGCAAATCAAGGGTAAAAATTTATAAATTGCAGATAACTGTTTCTATATTTTATTCTTCACGGGGCCAGAATTCTGCAATGTCTACTAAATTTTAGTATATTTTAAAAGGAATTTCATGAGCATAGTCAGAGATGGTAAACATTGTCTCTTTCAGCGGAAGCATTTTCAGTTAATTGAGGACATAATCTTAGATAGAATGCTCTCTTTTTATTACATGATTGGTAAGCTGGGAGCCTTGGACTAGCGATTAGATATGACATGACGTATTTTCAGCTTATTGAGGACGTGACCTTAAATACAAGGTTGTGAAAAACACAAATTAGGATAGAAAATTAGTAGGCAGTAAAGCTAAAGCATTGTGTTAATTATCTTTCTATACTAGTAGTCCGCAGTCTTATTACGTAGGCTTCAATTTCTACGGTGTCTCTAGTACTTCTATTATTGCACATCTTTTTTTCAGAATGTTTTGTCATGTTTTCTATAATATTTTGACATGATCTAATTTTCACTTCCATTATTTATTTATTTCGATCTACTTTTATTCACTTTTCCTTGAGTCAAGAATCTATCAAAACAACTTGCGTTGGTGCATTTTTCTAGTTAATATTCCAATATTCAGACGACAAATTCTGCTAAAAGAGTTCAAAATATATTATCTATGGATGGAAATATTGAATAGGCCATTAATGTGGATAGAGCCCAAAAGGCTTTAAATTAAAGGTACGTTCAACTCATAAACATCAAAACTCTCTTTTCTAGCAGTCAATAATTAAATAGAAAGTCTAAATTATAAGGAAAAAACAAAATGGTAACTGCTGAATAAAGTAGGAAAGAAATTGAAACAAAAAAAAAGGTACAAAATTAAAGACTATTGCATAAGTAGGCTTCTAATTAGAGCTGCTTGAGTAGTGTCTGATGATTCCAATAACTCTGATAATCTGTCACTCAGATCATCAACTTCTCTATGCAAACTTTTTATATAATTGCATGTATCTTGCAACACCCTACTTGCTGAAACCTGCTCCATATAAAACACAAATAAATTATTAGGAGTAGTTCAGATAATCGAACCATTTCTCGATTTGTACGTGTCATCCTTGATCAATAGTTATCACGCTAATATATTAATTAATGGGATCTTCACATAAATAGCTGGACAGATTTAGTGTTTACTTTTTTTAACCGATTTCATATTGAAATAATATATTTAATTTTAAGCAAATAAAAATATTACTCATATCAGACAATTAACTTTAGTAAGTTCACAAATCAAGAGACAAATTAAAAAGAATCCAATGTAGGAATTTCTGTTAAATTATTAGTACTTGGGTTCCAATTTTTCAAATACCAATAACTTAACTAGACCAATAAAATCTAACGATGCATTAGATGTTCAGTGAATTTTACTAATTTAAAGAGGAAATAATAAGAAATTAAGATTACATTGTTCAAATAGTACTATATTAAATGTATTTTTACTTCTCTCTTTTTTTTCTTGCTAGAATAATAATTACAAAAAGATGCTTCCACACATTTTAGGGTTCTTCCACAAAGCATATCTTTACCTTAAAAATGACAAAAAAAAAAAAAAGTAGGTGGGAGGTGGGTAT</genome_strand>
        <mrna_strand>AGGTTGTCTACCTGGATGAGCCGAGTACTGGACTTGATCCAGCTTCAAGAGATACCTTATGGACTGTTGTGAAGAATGCACGGAAAGGCAGAGCGATAATTCTCACTA................................................................................................................................................................................CCCATTCAATGGAAGAAGCGGATTATTTATGTGATCGCTTAGGAATCTTCGTTGATGGAAGCTTGCAATGCATAGCAAATTCATCAGAG............................................................................................TTGAAGACAAGATATGGAGGGTCTTACGTGCTCGCGATAACTACATCAGCTGATAATGAGGTGGAAGTGGAGAAAATGGTGCGACAGATATGCCCAAATGCCAACAAAGTGTATCATTTATCAGGTACACAGAAGTTCGAGTTGCCAAAACATGAATCGAAAATTGCAGATGTATTTCAACTAGTTGAGAATGCAAAGAGTAGATTTCCAATTTATGCTTGGGGTATGGCTGATACAACTTTAGAGGATGTTTTTATCAAGGTTGCTGCTTGTGCTCAATCCTTTAATGAAGCATGATCATAACATTCAACCACAAATTCGAAGGAAAAAAAAAAGAAAGAAGGATCATATGTGCATAATGTTTTTTTTTTTGCCTTAATTAGGAAATATTTAGGTTCATGTAGATATATCAAGTACAGAGCAAATGTGACTCCTATTTTGTCATGTAAATTGTGTACAATGATGCCAATCTCTGGCGTTTTGTTCGTGGAATAGAAAGAGTTTGTTGTATCAACGTATTTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA-AAACT-CGAGGGGGGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547445" ref_strand="+" ref_description="SGN-E547445 [TUS-71-F7]">
      <seq>gttactggggctgaaacagaggtccttcaatggctgactccgtgacagctccagcgacttacgggactcaagccgatgctttgcttaggaagaatttgacgtttcagaaacgaaatgtcaagacaaatgttcgcctcatcttagtccctatttcactccttcttttaataagggccattgaattctcgagtacagtgatgacggccaaagacagtaaatgtggctgccaatgtgtcgacaaaaatggtacaggaaaatgtgtaaaagaatgtggtctgcaatactcaaatccgttacaagcagcaagttgtgaagttaaagaaccatatgaatggcatcctgttttccagttaccagaacctcaatttagtgctgtaaaatctgatgttattacatatccagacttgcctaatgagtcatgcagagactctaattcttgtccagctattatactagttactggatctaatcaaacttttggacaaagtctgagtgggaacatggtcaaaaacgacacaaccgtagagcctacttttatcaccaaccggatcattggtacagagattccagctgcgcgcacgagtttccaagaccctgctttcaactcaccaaaggctacattctatattattcaagctgggtgtccagcggatttcaagggtctagacgtctatgataattacgcaggctatatgttacaatgtcgtgaaggtttatctttgtggcgtaatagtccctctgagatcaatgatgagctgtttaaaggttacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="-" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83613" stop="80822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83313" g_stop="83207" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83206" i_stop="82074" i_length="1133">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82073" g_stop="81695" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="486" r_length="379" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81694" i_stop="81596" i_length="99">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81595" g_stop="81528" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="554" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81527" i_stop="81442" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81441" g_stop="81303" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="693" r_length="139" r_score="0.942"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81302" i_stop="81203" i_length="100">
            <donor d_prob="0.669" d_score="0.94"/>
            <acceptor a_prob="0.774" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81202" g_stop="81122" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="774" r_length="81" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="-" ref_id="SGN-E547445" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83313" e_stop="83207"/>
          <exon e_start="82073" e_stop="81695"/>
          <exon e_start="81595" e_stop="81528"/>
          <exon e_start="81441" e_stop="81303"/>
          <exon e_start="81202" e_stop="81122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACTGGGGCTGAAACGGAGGTCATTCAATGGCAGACTCCGTGACAGCTCCAGCGACTTACGGGACTCAAGCTGATGCTTTGCTTAGGAAGAATCTGGCGTTTCAGGTACGCCTTTTTCCGAATCTAGAATTTCTAAAATATGCGAGTGTAAGTTAACAATGAATTAAGTTGGAATATGTTAAAAATATTTTCGATGGATATATAGTATATATATGAAAATTTTGTTTCTGCCGTTAATCCATTTTTTAAATATTTTTTTGGCTTTGTATGTGCAAAGTTATACAAATATTAAACGTGAAATGTTTCTTATTTTGCATGATAAAACTACATAAATCTGAATAAAGAATTTCAATTCGCCCCAGCCAACATTACATAATTTGTTGTTTTTTAAACTTGTCTCGCTTAAATTTGCACTGCCTCGCACTAATTTTTGTTTTTTGTTCTTCCAATTTCGGATGTGTGACATTAGAAATGGTGAAATTTTAAAAGGATATATATTCTAAGTATAATTAATTTAATATTAATTTTTTAAAGAGGTAGACGTAATATTTTAAATCATATAGAAATCCAATAACGTTATTTTAGAGGGAGTTTTCTAAATTTGTTTTCGCTCAACAGGCAACCTGCCCCTGATCCCGCAGTTCAACCCGGCCCGTCCTTCGCCGGAACCATCCCGGTAGCTGGTGTGTGACTCGAAATTTATGAAATGTTTTTGATTGGAACCGCAGGAATCAATAGAAAAGTAAAAAAATCATTACATGTTTTTGTTTGCCTTTTCTTTGTTATTTGATAGGAGAAACTCAGGATTAAAGAATCTAATCAGATACAGCTTTGATAATAAGTGAATGAACTCAGGATCATTATACAAAACAATGCATGTATCATCATAGCGAGTGTGCACAAGTAGACATTTAAGTTTATAGAAAATTGAACAAGTAGATAAATTTGTACATGGCACAATACAAATAAGATGCGACGTTGGACATAAAATTGTCAGGTAGGGTGTCATATAGGACGAATGTGTTTATTTGTTCAATTTTGTACAAGTTTAAGTGTTTACTTGTGCACATTCAAAGTTAAAAGTCATAGTTGTTAGTTAAGGCCAAGTTAATGATCATATGTTTATGTATTATGCATTTCTTTTATGTGTTGAATACCAGATTGTGATAATTTACATGTAGTATCATTTTTTTTGCTTCTAAACTGTAGTGGTTTGTTGTCAAATTTTTTTGATGCAGAAACGAAATGTCAAGACAAATGTTCGCCTCATCTTAGTCCCTATTTCACTCCTCCTTTTAATAAGGGCCATTGAATTCTCGAGTACTGTGATGACGGCCAAAGACACTAAATGTGGCTGCCAATGTGTTGAAAAAAATGGTACAGGAAAATGTGTAAAAGAATGTGGTCTGCAATACTCAAATCCGTTACAAGCAGCAAGTTGTGAAGTTAAAGAACCATATGAATGGCATCCTGTTTTCCAGTTACCGGAACCTCAATTTAGTGCTGTAAAATCTGATGTTATTACATATCCAGACTTGCCTAATGAGTCATGCAGAGACTCTAATTCTTGTCCAGCTATTATACTAGTTACTGGATCTAATCAAACTTTTGGACAAAGTATGCTTTTTCCGAATGCAACTACGACTAGTTTTTTTTTTTTTACTACAAAAAAAAACAAGGTTTCTAATGAATTTTCGATTGTATGGAACTTCATAGGTCTGAGTGGGAACATGGTCAAAAACGACACAACCGTAGAGCCTACTTTTATCACCAACCGGATCATTGTAAGTCCCTTCCATTTTCATATTTTTCCCCTTGGATTAATTGCTATATATCATGGACCTTGTGAACTAGCTATAATATCTTTCAGGGTACAGAGATTCCAGCTGCGCGTACGAGTTTTCAAAACCCTGCTTTCTACTCACCAAAGGCTACACTCTATATTATTCAAGCTGGGTGTCCAGCGGATTTCAAGGGTCTAGACATCTATGATAATTACGGAAGCTATAGTACGATTAATGCTTGTTATTTCTAACTGGATTAATAGCTTGATCGTGTTGATGTTACATTTAGCATATTCATAGCTCTGACCTTAATTTCCTACTGCAGTGTTACAATGTCGTACAGGTTTATCTTTGTGGCGTAATAGTCCCTCTGAGATCAATGATGAGCTGTTTAAAGGTTACATAA</genome_strand>
        <mrna_strand>GTTACTGGGGCTGAAACAGAGGTCCTTCAATGGCTGACTCCGTGACAGCTCCAGCGACTTACGGGACTCAAGCCGATGCTTTGCTTAGGAAGAATTTGACGTTTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGAAATGTCAAGACAAATGTTCGCCTCATCTTAGTCCCTATTTCACTCCTTCTTTTAATAAGGGCCATTGAATTCTCGAGTACAGTGATGACGGCCAAAGACAGTAAATGTGGCTGCCAATGTGTCGACAAAAATGGTACAGGAAAATGTGTAAAAGAATGTGGTCTGCAATACTCAAATCCGTTACAAGCAGCAAGTTGTGAAGTTAAAGAACCATATGAATGGCATCCTGTTTTCCAGTTACCAGAACCTCAATTTAGTGCTGTAAAATCTGATGTTATTACATATCCAGACTTGCCTAATGAGTCATGCAGAGACTCTAATTCTTGTCCAGCTATTATACTAGTTACTGGATCTAATCAAACTTTTGGACAAA...................................................................................................GTCTGAGTGGGAACATGGTCAAAAACGACACAACCGTAGAGCCTACTTTTATCACCAACCGGATCATT......................................................................................GGTACAGAGATTCCAGCTGCGCGCACGAGTTTCCAAGACCCTGCTTTCAACTCACCAAAGGCTACATTCTATATTATTCAAGCTGGGTGTCCAGCGGATTTCAAGGGTCTAGACGTCTATGATAATTACGCAGGCTATA....................................................................................................TGTTACAATGTCGTGAAGGTTTATCTTTGTGGCGTAATAGTCCCTCTGAGATCAATGATGAGCTGTTTAAAGGTTACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361068" ref_strand="+" ref_description="SGN-E361068 [cLPP-13-A4]">
      <seq>ttactggggctgaaacagaggtccttcaatggctgactccgtgacagctccagcgacttacgggactcaagccgatgctttgcttaggaagaatttgacgtttcagaaacgaaatgtcaagacaaatgttcgcctcatcttagtccctatttcactccttcttttaataagggccattgaattctcgagtacagtgatgacggccaaagacagtaaatgtggctgccaatgtgtcgacaaaaatggtacaggaaaatgtgtaaaagaatgtggtctgcaatactcaaatccgttacaagcagcaagttgtgaagttaaagaaccatatgaatggcatcctgttttccagttaccagaacctcaatttagtgctgtaaaatctgatgttattacatatccagacttgcctaatgagtcatgcagagactctaattcttgtccagctattatactagttactgggatctatcaaacttttggacaaagtctgagtgggaacatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="-" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83612" stop="81277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83312" g_stop="83207" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83206" i_stop="82074" i_length="1133">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82073" g_stop="81695" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="485" r_length="379" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81694" i_stop="81596" i_length="99">
            <donor d_prob="0.900" d_score="0.94"/>
            <acceptor a_prob="0.855" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81595" g_stop="81577" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="504" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="-" ref_id="SGN-E361068" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83312" e_stop="83207"/>
          <exon e_start="82073" e_stop="81695"/>
          <exon e_start="81595" e_stop="81577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTGGGGCTGAAACGGAGGTCATTCAATGGCAGACTCCGTGACAGCTCCAGCGACTTACGGGACTCAAGCTGATGCTTTGCTTAGGAAGAATCTGGCGTTTCAGGTACGCCTTTTTCCGAATCTAGAATTTCTAAAATATGCGAGTGTAAGTTAACAATGAATTAAGTTGGAATATGTTAAAAATATTTTCGATGGATATATAGTATATATATGAAAATTTTGTTTCTGCCGTTAATCCATTTTTTAAATATTTTTTTGGCTTTGTATGTGCAAAGTTATACAAATATTAAACGTGAAATGTTTCTTATTTTGCATGATAAAACTACATAAATCTGAATAAAGAATTTCAATTCGCCCCAGCCAACATTACATAATTTGTTGTTTTTTAAACTTGTCTCGCTTAAATTTGCACTGCCTCGCACTAATTTTTGTTTTTTGTTCTTCCAATTTCGGATGTGTGACATTAGAAATGGTGAAATTTTAAAAGGATATATATTCTAAGTATAATTAATTTAATATTAATTTTTTAAAGAGGTAGACGTAATATTTTAAATCATATAGAAATCCAATAACGTTATTTTAGAGGGAGTTTTCTAAATTTGTTTTCGCTCAACAGGCAACCTGCCCCTGATCCCGCAGTTCAACCCGGCCCGTCCTTCGCCGGAACCATCCCGGTAGCTGGTGTGTGACTCGAAATTTATGAAATGTTTTTGATTGGAACCGCAGGAATCAATAGAAAAGTAAAAAAATCATTACATGTTTTTGTTTGCCTTTTCTTTGTTATTTGATAGGAGAAACTCAGGATTAAAGAATCTAATCAGATACAGCTTTGATAATAAGTGAATGAACTCAGGATCATTATACAAAACAATGCATGTATCATCATAGCGAGTGTGCACAAGTAGACATTTAAGTTTATAGAAAATTGAACAAGTAGATAAATTTGTACATGGCACAATACAAATAAGATGCGACGTTGGACATAAAATTGTCAGGTAGGGTGTCATATAGGACGAATGTGTTTATTTGTTCAATTTTGTACAAGTTTAAGTGTTTACTTGTGCACATTCAAAGTTAAAAGTCATAGTTGTTAGTTAAGGCCAAGTTAATGATCATATGTTTATGTATTATGCATTTCTTTTATGTGTTGAATACCAGATTGTGATAATTTACATGTAGTATCATTTTTTTTGCTTCTAAACTGTAGTGGTTTGTTGTCAAATTTTTTTGATGCAGAAACGAAATGTCAAGACAAATGTTCGCCTCATCTTAGTCCCTATTTCACTCCTCCTTTTAATAAGGGCCATTGAATTCTCGAGTACTGTGATGACGGCCAAAGACACTAAATGTGGCTGCCAATGTGTTGAAAAAAATGGTACAGGAAAATGTGTAAAAGAATGTGGTCTGCAATACTCAAATCCGTTACAAGCAGCAAGTTGTGAAGTTAAAGAACCATATGAATGGCATCCTGTTTTCCAGTTACCGGAACCTCAATTTAGTGCTGTAAAATCTGATGTTATTACATATCCAGACTTGCCTAATGAGTCATGCAGAGACTCTAATTCTTGTCCAGCTATTATACTAGTTACT-GGATCTAATCAAACTTTTGGACAAAGTATGCTTTTTCCGAATGCAACTACGACTAGTTTTTTTTTTTTTACTACAAAAAAAAACAAGGTTTCTAATGAATTTTCGATTGTATGGAACTTCATAGGTCTGAGTGGGAACATGGT</genome_strand>
        <mrna_strand>TTACTGGGGCTGAAACAGAGGTCCTTCAATGGCTGACTCCGTGACAGCTCCAGCGACTTACGGGACTCAAGCCGATGCTTTGCTTAGGAAGAATTTGACGTTTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGAAATGTCAAGACAAATGTTCGCCTCATCTTAGTCCCTATTTCACTCCTTCTTTTAATAAGGGCCATTGAATTCTCGAGTACAGTGATGACGGCCAAAGACAGTAAATGTGGCTGCCAATGTGTCGACAAAAATGGTACAGGAAAATGTGTAAAAGAATGTGGTCTGCAATACTCAAATCCGTTACAAGCAGCAAGTTGTGAAGTTAAAGAACCATATGAATGGCATCCTGTTTTCCAGTTACCAGAACCTCAATTTAGTGCTGTAAAATCTGATGTTATTACATATCCAGACTTGCCTAATGAGTCATGCAGAGACTCTAATTCTTGTCCAGCTATTATACTAGTTACTGGGATCT-ATCAAACTTTTGGACAAA...................................................................................................GTCTGAGTGGGAACATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329235" ref_strand="+" ref_description="SGN-E329235 [cTOD-2-G12]">
      <seq>aagaattaaaaagagaggattgttttttctactttagttactggggctgaaacggaggtcattcaatggcagactccgtgacagctccagcgacttacgggactcaagctgatgctttgcttaagaagaatctggcgtttcagaaacgaaatgtcaagacaaatgttcgcctcatcttagtccctatttcactcctccttttaataagggccattgaattctcgagtactgtgatgacggccaaagacactaaatgtggctgccaatgtgttgaaaaaaatggtacaggaaaatgtgtaaaagaatgtggtctgcaatactcaaatccgttacaagcagcaagttgtgaagttaaagaaccatatgaatggcatcctgttttccagttaccggaacctcaatttagtgctgtaaaatctgatgttattacatatccagacttgcctaatgagtcatgcagagactctaattcttgtccagctattatactagttactggatctaatcaaacttttggacaaagtctgagtgggaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="-" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83649" stop="81390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83349" g_stop="83207" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83206" i_stop="82074" i_length="1133">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82073" g_stop="81695" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="522" r_length="379" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81694" i_stop="81596" i_length="99">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81595" g_stop="81581" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="537" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="-" ref_id="SGN-E329235" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83349" e_stop="83207"/>
          <exon e_start="82073" e_stop="81695"/>
          <exon e_start="81595" e_stop="81581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATTAAAAAGAGAGGATTGTTTTTTCTACTTTAGTTACTGGGGCTGAAACGGAGGTCATTCAATGGCAGACTCCGTGACAGCTCCAGCGACTTACGGGACTCAAGCTGATGCTTTGCTTAGGAAGAATCTGGCGTTTCAGGTACGCCTTTTTCCGAATCTAGAATTTCTAAAATATGCGAGTGTAAGTTAACAATGAATTAAGTTGGAATATGTTAAAAATATTTTCGATGGATATATAGTATATATATGAAAATTTTGTTTCTGCCGTTAATCCATTTTTTAAATATTTTTTTGGCTTTGTATGTGCAAAGTTATACAAATATTAAACGTGAAATGTTTCTTATTTTGCATGATAAAACTACATAAATCTGAATAAAGAATTTCAATTCGCCCCAGCCAACATTACATAATTTGTTGTTTTTTAAACTTGTCTCGCTTAAATTTGCACTGCCTCGCACTAATTTTTGTTTTTTGTTCTTCCAATTTCGGATGTGTGACATTAGAAATGGTGAAATTTTAAAAGGATATATATTCTAAGTATAATTAATTTAATATTAATTTTTTAAAGAGGTAGACGTAATATTTTAAATCATATAGAAATCCAATAACGTTATTTTAGAGGGAGTTTTCTAAATTTGTTTTCGCTCAACAGGCAACCTGCCCCTGATCCCGCAGTTCAACCCGGCCCGTCCTTCGCCGGAACCATCCCGGTAGCTGGTGTGTGACTCGAAATTTATGAAATGTTTTTGATTGGAACCGCAGGAATCAATAGAAAAGTAAAAAAATCATTACATGTTTTTGTTTGCCTTTTCTTTGTTATTTGATAGGAGAAACTCAGGATTAAAGAATCTAATCAGATACAGCTTTGATAATAAGTGAATGAACTCAGGATCATTATACAAAACAATGCATGTATCATCATAGCGAGTGTGCACAAGTAGACATTTAAGTTTATAGAAAATTGAACAAGTAGATAAATTTGTACATGGCACAATACAAATAAGATGCGACGTTGGACATAAAATTGTCAGGTAGGGTGTCATATAGGACGAATGTGTTTATTTGTTCAATTTTGTACAAGTTTAAGTGTTTACTTGTGCACATTCAAAGTTAAAAGTCATAGTTGTTAGTTAAGGCCAAGTTAATGATCATATGTTTATGTATTATGCATTTCTTTTATGTGTTGAATACCAGATTGTGATAATTTACATGTAGTATCATTTTTTTTGCTTCTAAACTGTAGTGGTTTGTTGTCAAATTTTTTTGATGCAGAAACGAAATGTCAAGACAAATGTTCGCCTCATCTTAGTCCCTATTTCACTCCTCCTTTTAATAAGGGCCATTGAATTCTCGAGTACTGTGATGACGGCCAAAGACACTAAATGTGGCTGCCAATGTGTTGAAAAAAATGGTACAGGAAAATGTGTAAAAGAATGTGGTCTGCAATACTCAAATCCGTTACAAGCAGCAAGTTGTGAAGTTAAAGAACCATATGAATGGCATCCTGTTTTCCAGTTACCGGAACCTCAATTTAGTGCTGTAAAATCTGATGTTATTACATATCCAGACTTGCCTAATGAGTCATGCAGAGACTCTAATTCTTGTCCAGCTATTATACTAGTTACTGGATCTAATCAAACTTTTGGACAAAGTATGCTTTTTCCGAATGCAACTACGACTAGTTTTTTTTTTTTTACTACAAAAAAAAACAAGGTTTCTAATGAATTTTCGATTGTATGGAACTTCATAGGTCTGAGTGGGAACA</genome_strand>
        <mrna_strand>AAGAATTAAAAAGAGAGGATTGTTTTTTCTACTTTAGTTACTGGGGCTGAAACGGAGGTCATTCAATGGCAGACTCCGTGACAGCTCCAGCGACTTACGGGACTCAAGCTGATGCTTTGCTTAAGAAGAATCTGGCGTTTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGAAATGTCAAGACAAATGTTCGCCTCATCTTAGTCCCTATTTCACTCCTCCTTTTAATAAGGGCCATTGAATTCTCGAGTACTGTGATGACGGCCAAAGACACTAAATGTGGCTGCCAATGTGTTGAAAAAAATGGTACAGGAAAATGTGTAAAAGAATGTGGTCTGCAATACTCAAATCCGTTACAAGCAGCAAGTTGTGAAGTTAAAGAACCATATGAATGGCATCCTGTTTTCCAGTTACCGGAACCTCAATTTAGTGCTGTAAAATCTGATGTTATTACATATCCAGACTTGCCTAATGAGTCATGCAGAGACTCTAATTCTTGTCCAGCTATTATACTAGTTACTGGATCTAATCAAACTTTTGGACAAA...................................................................................................GTCTGAGTGGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363508" ref_strand="+" ref_description="SGN-E363508 [cLPP-4-N9]">
      <seq>aaaaattaaaaagagaggattgttttttctactttagttactggggctgaaacagaggtccttcaatggctgactccgtgacagctccagcgacttacgggactcaagccgatgctttgcttaggaagaatttgacgtttcagaaacgaaatgtcaagacaaatgttcgcctcatcttagtccctatttcactccttcttttaataagggccattgaattctcgagtacagtgatgacggccaaagacagtaaatgtggctgccaatgtgtcgacaaaaatggtacaggaaaatgtgtaaaagaatgtggtctgcaatactcaaatccgttacaagcagcaagttgtgaagttaaagaaccatatgaatggcatcctgttttccagttaccagaacctcaatttagtgctgtaaaatctgatgttattacatatccagacttgcctaatgagtcatgcagagactctaattcttgtccagctattatactagttactggatctaatcaaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="-" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83649" stop="81403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83349" g_stop="83207" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83206" i_stop="82074" i_length="1133">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82073" g_stop="81703" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="514" r_length="371" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="-" ref_id="SGN-E363508" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83349" e_stop="83207"/>
          <exon e_start="82073" e_stop="81703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATTAAAAAGAGAGGATTGTTTTTTCTACTTTAGTTACTGGGGCTGAAACGGAGGTCATTCAATGGCAGACTCCGTGACAGCTCCAGCGACTTACGGGACTCAAGCTGATGCTTTGCTTAGGAAGAATCTGGCGTTTCAGGTACGCCTTTTTCCGAATCTAGAATTTCTAAAATATGCGAGTGTAAGTTAACAATGAATTAAGTTGGAATATGTTAAAAATATTTTCGATGGATATATAGTATATATATGAAAATTTTGTTTCTGCCGTTAATCCATTTTTTAAATATTTTTTTGGCTTTGTATGTGCAAAGTTATACAAATATTAAACGTGAAATGTTTCTTATTTTGCATGATAAAACTACATAAATCTGAATAAAGAATTTCAATTCGCCCCAGCCAACATTACATAATTTGTTGTTTTTTAAACTTGTCTCGCTTAAATTTGCACTGCCTCGCACTAATTTTTGTTTTTTGTTCTTCCAATTTCGGATGTGTGACATTAGAAATGGTGAAATTTTAAAAGGATATATATTCTAAGTATAATTAATTTAATATTAATTTTTTAAAGAGGTAGACGTAATATTTTAAATCATATAGAAATCCAATAACGTTATTTTAGAGGGAGTTTTCTAAATTTGTTTTCGCTCAACAGGCAACCTGCCCCTGATCCCGCAGTTCAACCCGGCCCGTCCTTCGCCGGAACCATCCCGGTAGCTGGTGTGTGACTCGAAATTTATGAAATGTTTTTGATTGGAACCGCAGGAATCAATAGAAAAGTAAAAAAATCATTACATGTTTTTGTTTGCCTTTTCTTTGTTATTTGATAGGAGAAACTCAGGATTAAAGAATCTAATCAGATACAGCTTTGATAATAAGTGAATGAACTCAGGATCATTATACAAAACAATGCATGTATCATCATAGCGAGTGTGCACAAGTAGACATTTAAGTTTATAGAAAATTGAACAAGTAGATAAATTTGTACATGGCACAATACAAATAAGATGCGACGTTGGACATAAAATTGTCAGGTAGGGTGTCATATAGGACGAATGTGTTTATTTGTTCAATTTTGTACAAGTTTAAGTGTTTACTTGTGCACATTCAAAGTTAAAAGTCATAGTTGTTAGTTAAGGCCAAGTTAATGATCATATGTTTATGTATTATGCATTTCTTTTATGTGTTGAATACCAGATTGTGATAATTTACATGTAGTATCATTTTTTTTGCTTCTAAACTGTAGTGGTTTGTTGTCAAATTTTTTTGATGCAGAAACGAAATGTCAAGACAAATGTTCGCCTCATCTTAGTCCCTATTTCACTCCTCCTTTTAATAAGGGCCATTGAATTCTCGAGTACTGTGATGACGGCCAAAGACACTAAATGTGGCTGCCAATGTGTTGAAAAAAATGGTACAGGAAAATGTGTAAAAGAATGTGGTCTGCAATACTCAAATCCGTTACAAGCAGCAAGTTGTGAAGTTAAAGAACCATATGAATGGCATCCTGTTTTCCAGTTACCGGAACCTCAATTTAGTGCTGTAAAATCTGATGTTATTACATATCCAGACTTGCCTAATGAGTCATGCAGAGACTCTAATTCTTGTCCAGCTATTATACTAGTTACTGGATCTAATCAAACTTT</genome_strand>
        <mrna_strand>AAAAATTAAAAAGAGAGGATTGTTTTTTCTACTTTAGTTACTGGGGCTGAAACAGAGGTCCTTCAATGGCTGACTCCGTGACAGCTCCAGCGACTTACGGGACTCAAGCCGATGCTTTGCTTAGGAAGAATTTGACGTTTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGAAATGTCAAGACAAATGTTCGCCTCATCTTAGTCCCTATTTCACTCCTTCTTTTAATAAGGGCCATTGAATTCTCGAGTACAGTGATGACGGCCAAAGACAGTAAATGTGGCTGCCAATGTGTCGACAAAAATGGTACAGGAAAATGTGTAAAAGAATGTGGTCTGCAATACTCAAATCCGTTACAAGCAGCAAGTTGTGAAGTTAAAGAACCATATGAATGGCATCCTGTTTTCCAGTTACCAGAACCTCAATTTAGTGCTGTAAAATCTGATGTTATTACATATCCAGACTTGCCTAATGAGTCATGCAGAGACTCTAATTCTTGTCCAGCTATTATACTAGTTACTGGATCTAATCAAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361620" ref_strand="+" ref_description="SGN-E361620 [cLPP-12-G15]">
      <seq>aaaattaaaaagagaggattgttttttctactttagttactggggctgaaacagaggtccttcaatggctgactccgtgacagctccagcgacttacgggactcaagccgatgctttgcttatgaagaatttgacgtttcagaaacgaaatgtcaagacaaatgttcgcctcatcttagtccctatttcactccttcttttaataagggccattgaattctcgagtacagtgatgacggccaaagacagtaaatgtggctgccaatgtgtcgacaaaaatggtacaggaaaatgtgtaaaagaatgtggtctgcaatactcaaatccgttacaagcagcaagttgtgaagttaaagaaccatatgaatggcatcctgttgtccagttaccagaacctcaatttagtgctgtaaaatctgatgttattacatatccagacttgcctaatgagtcatgcagagactctaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="-" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83649" stop="81445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83348" g_stop="83207" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83206" i_stop="82074" i_length="1133">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82073" g_stop="81745" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="471" r_length="329" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="-" ref_id="SGN-E361620" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83348" e_stop="83207"/>
          <exon e_start="82073" e_stop="81745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTAAAAAGAGAGGATTGTTTTTTCTACTTTAGTTACTGGGGCTGAAACGGAGGTCATTCAATGGCAGACTCCGTGACAGCTCCAGCGACTTACGGGACTCAAGCTGATGCTTTGCTTAGGAAGAATCTGGCGTTTCAGGTACGCCTTTTTCCGAATCTAGAATTTCTAAAATATGCGAGTGTAAGTTAACAATGAATTAAGTTGGAATATGTTAAAAATATTTTCGATGGATATATAGTATATATATGAAAATTTTGTTTCTGCCGTTAATCCATTTTTTAAATATTTTTTTGGCTTTGTATGTGCAAAGTTATACAAATATTAAACGTGAAATGTTTCTTATTTTGCATGATAAAACTACATAAATCTGAATAAAGAATTTCAATTCGCCCCAGCCAACATTACATAATTTGTTGTTTTTTAAACTTGTCTCGCTTAAATTTGCACTGCCTCGCACTAATTTTTGTTTTTTGTTCTTCCAATTTCGGATGTGTGACATTAGAAATGGTGAAATTTTAAAAGGATATATATTCTAAGTATAATTAATTTAATATTAATTTTTTAAAGAGGTAGACGTAATATTTTAAATCATATAGAAATCCAATAACGTTATTTTAGAGGGAGTTTTCTAAATTTGTTTTCGCTCAACAGGCAACCTGCCCCTGATCCCGCAGTTCAACCCGGCCCGTCCTTCGCCGGAACCATCCCGGTAGCTGGTGTGTGACTCGAAATTTATGAAATGTTTTTGATTGGAACCGCAGGAATCAATAGAAAAGTAAAAAAATCATTACATGTTTTTGTTTGCCTTTTCTTTGTTATTTGATAGGAGAAACTCAGGATTAAAGAATCTAATCAGATACAGCTTTGATAATAAGTGAATGAACTCAGGATCATTATACAAAACAATGCATGTATCATCATAGCGAGTGTGCACAAGTAGACATTTAAGTTTATAGAAAATTGAACAAGTAGATAAATTTGTACATGGCACAATACAAATAAGATGCGACGTTGGACATAAAATTGTCAGGTAGGGTGTCATATAGGACGAATGTGTTTATTTGTTCAATTTTGTACAAGTTTAAGTGTTTACTTGTGCACATTCAAAGTTAAAAGTCATAGTTGTTAGTTAAGGCCAAGTTAATGATCATATGTTTATGTATTATGCATTTCTTTTATGTGTTGAATACCAGATTGTGATAATTTACATGTAGTATCATTTTTTTTGCTTCTAAACTGTAGTGGTTTGTTGTCAAATTTTTTTGATGCAGAAACGAAATGTCAAGACAAATGTTCGCCTCATCTTAGTCCCTATTTCACTCCTCCTTTTAATAAGGGCCATTGAATTCTCGAGTACTGTGATGACGGCCAAAGACACTAAATGTGGCTGCCAATGTGTTGAAAAAAATGGTACAGGAAAATGTGTAAAAGAATGTGGTCTGCAATACTCAAATCCGTTACAAGCAGCAAGTTGTGAAGTTAAAGAACCATATGAATGGCATCCTGTTTTCCAGTTACCGGAACCTCAATTTAGTGCTGTAAAATCTGATGTTATTACATATCCAGACTTGCCTAATGAGTCATGCAGAGACTCTAATTC</genome_strand>
        <mrna_strand>AAAATTAAAAAGAGAGGATTGTTTTTTCTACTTTAGTTACTGGGGCTGAAACAGAGGTCCTTCAATGGCTGACTCCGTGACAGCTCCAGCGACTTACGGGACTCAAGCCGATGCTTTGCTTATGAAGAATTTGACGTTTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGAAATGTCAAGACAAATGTTCGCCTCATCTTAGTCCCTATTTCACTCCTTCTTTTAATAAGGGCCATTGAATTCTCGAGTACAGTGATGACGGCCAAAGACAGTAAATGTGGCTGCCAATGTGTCGACAAAAATGGTACAGGAAAATGTGTAAAAGAATGTGGTCTGCAATACTCAAATCCGTTACAAGCAGCAAGTTGTGAAGTTAAAGAACCATATGAATGGCATCCTGTTGTCCAGTTACCAGAACCTCAATTTAGTGCTGTAAAATCTGATGTTATTACATATCCAGACTTGCCTAATGAGTCATGCAGAGACTCTAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361493" ref_strand="+" ref_description="SGN-E361493 [cLPP-6-M11]">
      <seq>agagagagaaataagtttttttttttccttaaaaaaaaaagtaaaagaatttgaattgaagataaaagaagaagaagataggagggcaatggaattgcaggggggaatccctctgctaatgcagcaatacaaagcattatttaagaaaaatttgttgcttgcattgcgtaacaagcccgcaacattcctacagctcttctcatctttcttcttcattttccttctattctgcatcaaattatctgatgaatcgcgcaatgcagataacacctttgctaaagaattgcgcgatcctaagcctcttattgcgccacctatcccaccttgtgaggacaagttttatattaagactccatgctatgatttcatttggagtggaaaacatagtaaaactattggggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83302" stop="84298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83596" g_stop="83998" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E361493" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83596" e_stop="83998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTAAGAAATAAGTTTTTTTTTTT-TTTTAAAAAAAAAGTAGAAGAATTTGAATTGAAGATAAAAGAAGAAGAAGATAGAAGGGCAATGGAATTGCAGGGGGGAATCCCTCTGCTAATGCAGCAATACAAAGCATTATTTAAGAAAAATTTGTTGCTTGCATTGCGTAACAAGCCCGCAACGTTCCTACAGCTCTTCTCATCTTTCTTCTTCATTTTCCTTCTATTCTGCATCAAATTATCTGATGAATCGCGCAATGCAGATAACACCTTTGCTAAAGAATTGCGCGATCCTAAGCCTCTTATGGCGCCATCTATCCCACCTTGTGAGGACAAGTTTTATATTAAGACTCCATGCTATGATTTCATTTGGAGTGGAAAACATAGTAAAACTATTGGGGATG</genome_strand>
        <mrna_strand>AGAGAGAGAAATAAGTTTTTTTTTTTCCTTAAAAAAAAAAGTAAAAGAATTTGAATTGAAGATAAAAGAAGAAGAAGATAGGAGGGCAATGGAATTGCAGGGGGGAATCCCTCTGCTAATGCAGCAATACAAAGCATTATTTAAGAAAAATTTGTTGCTTGCATTGCGTAACAAGCCCGCAACATTCCTACAGCTCTTCTCATCTTTCTTCTTCATTTTCCTTCTATTCTGCATCAAATTATCTGATGAATCGCGCAATGCAGATAACACCTTTGCTAAAGAATTGCGCGATCCTAAGCCTCTTATTGCGCCACCTATCCCACCTTGTGAGGACAAGTTTTATATTAAGACTCCATGCTATGATTTCATTTGGAGTGGAAAACATAGTAAAACTATTGGGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360917" ref_strand="+" ref_description="SGN-E360917 [cLPP-13-M21]">
      <seq>tttttccttaaaaaaaaaagtaaaagaatttgaattgaagataaaagaagaagaagataggagggcaatggaattgcaggggggaatccctctgctaatgcagcaatacaaagcattatttaagaaaaatttgttgcttgcattgcgtaacaagcccgcaacattcctacagctcttctcatctttcttcttcattttccttctattctgcatcaaattatctgatgaatcgcgcaatgcagataacacctttgctaaagaattgcgcgatcctaagcctcttattgcgccacctatcccaccttgtgaggacaagttttatattaagactccatgctatgatttcatttggagtggaaaacatagtaaaactattggggatgttgttaagggaattatggcaaataatcctggtaggcctattcctgccgacaaggttctagcatttaacacagcacaggatgtggataaatggcttttcgataatcctgtgcgttgtcctgcagctgtgcacttcacaatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83316" stop="84531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83616" g_stop="84051" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84052" i_stop="84142" i_length="91">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84143" g_stop="84231" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="525" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E360917" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83616" e_stop="84051"/>
          <exon e_start="84143" e_stop="84231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTTAAAAAAAAAGTAGAAGAATTTGAATTGAAGATAAAAGAAGAAGAAGATAGAAGGGCAATGGAATTGCAGGGGGGAATCCCTCTGCTAATGCAGCAATACAAAGCATTATTTAAGAAAAATTTGTTGCTTGCATTGCGTAACAAGCCCGCAACGTTCCTACAGCTCTTCTCATCTTTCTTCTTCATTTTCCTTCTATTCTGCATCAAATTATCTGATGAATCGCGCAATGCAGATAACACCTTTGCTAAAGAATTGCGCGATCCTAAGCCTCTTATGGCGCCATCTATCCCACCTTGTGAGGACAAGTTTTATATTAAGACTCCATGCTATGATTTCATTTGGAGTGGAAAACATAGTAAAACTATTGGGGATGTTGTTAAGGGAATTATGGCAAATAATCCTGGTAGGCCTATTCCTGCCAACAAGGTAACTATGCTGGATCAATTACGCATATGTTAAAATTCATATATCGTATTTTTGATTTGATGAATTGACAGTTAAAATTTTGTTGTTCCAGGTTCTAGCATTTAACACAGCACAGGATGTGGATAAATGGCTTTTCGATAATCCTGTGCGTTGTCCTGCAGCTGTGCACTTCACAATAGT</genome_strand>
        <mrna_strand>TTTTTCCTTAAAAAAAAAAGTAAAAGAATTTGAATTGAAGATAAAAGAAGAAGAAGATAGGAGGGCAATGGAATTGCAGGGGGGAATCCCTCTGCTAATGCAGCAATACAAAGCATTATTTAAGAAAAATTTGTTGCTTGCATTGCGTAACAAGCCCGCAACATTCCTACAGCTCTTCTCATCTTTCTTCTTCATTTTCCTTCTATTCTGCATCAAATTATCTGATGAATCGCGCAATGCAGATAACACCTTTGCTAAAGAATTGCGCGATCCTAAGCCTCTTATTGCGCCACCTATCCCACCTTGTGAGGACAAGTTTTATATTAAGACTCCATGCTATGATTTCATTTGGAGTGGAAAACATAGTAAAACTATTGGGGATGTTGTTAAGGGAATTATGGCAAATAATCCTGGTAGGCCTATTCCTGCCGACAAG...........................................................................................GTTCTAGCATTTAACACAGCACAGGATGTGGATAAATGGCTTTTCGATAATCCTGTGCGTTGTCCTGCAGCTGTGCACTTCACAATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364605" ref_strand="+" ref_description="SGN-E364605 [cLPP-18-I5]">
      <seq>ttccttaaaaaaaaagtaatttaattggaattgaagataaaagaagaagaagatcggagggcaatggaattgcaggggggaatccctctgctaatgcagcaatacaaagcattatttaagaaaaatttgttgcttgcattgcgtaacaagcccgcaacattcctacagctcttctcatctttcttcttcattttccttctattctgcatcaaattatctgatgaatcgcgcaatgcagataacacctttgctaaagaattgcgcgatcctaagcctcttattgcgccacctatcccaccttgtgaggacaagttttatatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83342" stop="84241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83620" g_stop="83941" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E364605" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83620" e_stop="83941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTAAAAAAAAAGTAGAAGAATTTGAATTGAAGATAAAAGAAGAAGAAGATAGAAGGGCAATGGAATTGCAGGGGGGAATCCCTCTGCTAATGCAGCAATACAAAGCATTATTTAAGAAAAATTTGTTGCTTGCATTGCGTAACAAGCCCGCAACGTTCCTACAGCTCTTCTCATCTTTCTTCTTCATTTTCCTTCTATTCTGCATCAAATTATCTGATGAATCGCGCAATGCAGATAACACCTTTGCTAAAGAATTGCGCGATCCTAAGCCTCTTATGGCGCCATCTATCCCACCTTGTGAGGACAAGTTTTATATTA</genome_strand>
        <mrna_strand>TTCCTTAAAAAAAAAGTAATTTAATTGGAATTGAAGATAAAAGAAGAAGAAGATCGGAGGGCAATGGAATTGCAGGGGGGAATCCCTCTGCTAATGCAGCAATACAAAGCATTATTTAAGAAAAATTTGTTGCTTGCATTGCGTAACAAGCCCGCAACATTCCTACAGCTCTTCTCATCTTTCTTCTTCATTTTCCTTCTATTCTGCATCAAATTATCTGATGAATCGCGCAATGCAGATAACACCTTTGCTAAAGAATTGCGCGATCCTAAGCCTCTTATTGCGCCACCTATCCCACCTTGTGAGGACAAGTTTTATATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361098" ref_strand="+" ref_description="SGN-E361098 [cLPP-13-K6]">
      <seq>aaaaagtaaaagaatttgaattgaagataaaagaagaagaagataggagggcaatggaattgcaggggggaatccctctgctaatgcagcaatacaaagcattatttaagaaaaatttgttgcttgcattgcgtaacaagcccgcaacattcctacagctcttctcatctttcttcttcattttccttctattctgcatcaaattatctgatgaatcgcgcaatgcagataacacctttgctaaagaattgcgcgatcctaagcctcttattgcgccacctatcccaccttgtgaggacaagttttatattaagactccatgctatgatttcatttggagtggaaaacatagtaaaactattggggatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83330" stop="84299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83630" g_stop="83999" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E361098" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83630" e_stop="83999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTAGAAGAATTTGAATTGAAGATAAAAGAAGAAGAAGATAGAAGGGCAATGGAATTGCAGGGGGGAATCCCTCTGCTAATGCAGCAATACAAAGCATTATTTAAGAAAAATTTGTTGCTTGCATTGCGTAACAAGCCCGCAACGTTCCTACAGCTCTTCTCATCTTTCTTCTTCATTTTCCTTCTATTCTGCATCAAATTATCTGATGAATCGCGCAATGCAGATAACACCTTTGCTAAAGAATTGCGCGATCCTAAGCCTCTTATGGCGCCATCTATCCCACCTTGTGAGGACAAGTTTTATATTAAGACTCCATGCTATGATTTCATTTGGAGTGGAAAACATAGTAAAACTATTGGGGATGT</genome_strand>
        <mrna_strand>AAAAAGTAAAAGAATTTGAATTGAAGATAAAAGAAGAAGAAGATAGGAGGGCAATGGAATTGCAGGGGGGAATCCCTCTGCTAATGCAGCAATACAAAGCATTATTTAAGAAAAATTTGTTGCTTGCATTGCGTAACAAGCCCGCAACATTCCTACAGCTCTTCTCATCTTTCTTCTTCATTTTCCTTCTATTCTGCATCAAATTATCTGATGAATCGCGCAATGCAGATAACACCTTTGCTAAAGAATTGCGCGATCCTAAGCCTCTTATTGCGCCACCTATCCCACCTTGTGAGGACAAGTTTTATATTAAGACTCCATGCTATGATTTCATTTGGAGTGGAAAACATAGTAAAACTATTGGGGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365161" ref_strand="+" ref_description="SGN-E365161 [cLPP-17-F21]">
      <seq>aaaagtaaaagaatttgaattgaagataaaagaagaagaagataggagggcaatggaattgcaggggggaatccctctgctaatgcagcaatacaaagcattatttaagaaaaatttgttgcttgcattgcgtaacaagcccgcaacattcctacagctcttctcatctttcttcttcattttccttctattctgcatcaaattatctgatgaatcgcgcaatgcagataacacctttgctaaagaattgcgcgatcctaagcctcttattgcgccacctatcccaccttgtgaggacaagttttatattaagactccatgctatgatttcatttggagtggaaaacatagtaaaactattggggatgttgttaagggaattatggcaaataatcctggtaggcctattcctgccgacaaggttctagcatttaacacagcacaggatgtggataaatggcttttcgataatcctgtgcgttgtcctgcagctgtgcacttcacaatagtgaaggggaataaaattagttatggtattcagacaaactccacggatgtagtgaaacgaggagtaactgaggatccaacttttaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83331" stop="84617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83631" g_stop="84051" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84052" i_stop="84142" i_length="91">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84143" g_stop="84317" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="596" r_length="175" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E365161" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83631" e_stop="84051"/>
          <exon e_start="84143" e_stop="84317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTAGAAGAATTTGAATTGAAGATAAAAGAAGAAGAAGATAGAAGGGCAATGGAATTGCAGGGGGGAATCCCTCTGCTAATGCAGCAATACAAAGCATTATTTAAGAAAAATTTGTTGCTTGCATTGCGTAACAAGCCCGCAACGTTCCTACAGCTCTTCTCATCTTTCTTCTTCATTTTCCTTCTATTCTGCATCAAATTATCTGATGAATCGCGCAATGCAGATAACACCTTTGCTAAAGAATTGCGCGATCCTAAGCCTCTTATGGCGCCATCTATCCCACCTTGTGAGGACAAGTTTTATATTAAGACTCCATGCTATGATTTCATTTGGAGTGGAAAACATAGTAAAACTATTGGGGATGTTGTTAAGGGAATTATGGCAAATAATCCTGGTAGGCCTATTCCTGCCAACAAGGTAACTATGCTGGATCAATTACGCATATGTTAAAATTCATATATCGTATTTTTGATTTGATGAATTGACAGTTAAAATTTTGTTGTTCCAGGTTCTAGCATTTAACACAGCACAGGATGTGGATAAATGGCTTTTCGATAATCCTGTGCGTTGTCCTGCAGCTGTGCACTTCACAATAGTGAAGGGGAATAAAATTAGTTATGGTATTCAGACAAACTCCACGGATGTAGTGAAACGAGGAGTAACTGAGGATCCAACTTTTAAGT</genome_strand>
        <mrna_strand>AAAAGTAAAAGAATTTGAATTGAAGATAAAAGAAGAAGAAGATAGGAGGGCAATGGAATTGCAGGGGGGAATCCCTCTGCTAATGCAGCAATACAAAGCATTATTTAAGAAAAATTTGTTGCTTGCATTGCGTAACAAGCCCGCAACATTCCTACAGCTCTTCTCATCTTTCTTCTTCATTTTCCTTCTATTCTGCATCAAATTATCTGATGAATCGCGCAATGCAGATAACACCTTTGCTAAAGAATTGCGCGATCCTAAGCCTCTTATTGCGCCACCTATCCCACCTTGTGAGGACAAGTTTTATATTAAGACTCCATGCTATGATTTCATTTGGAGTGGAAAACATAGTAAAACTATTGGGGATGTTGTTAAGGGAATTATGGCAAATAATCCTGGTAGGCCTATTCCTGCCGACAAG...........................................................................................GTTCTAGCATTTAACACAGCACAGGATGTGGATAAATGGCTTTTCGATAATCCTGTGCGTTGTCCTGCAGCTGTGCACTTCACAATAGTGAAGGGGAATAAAATTAGTTATGGTATTCAGACAAACTCCACGGATGTAGTGAAACGAGGAGTAACTGAGGATCCAACTTTTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360897" ref_strand="+" ref_description="SGN-E360897 [cLPP-13-G5]">
      <seq>aagtgaaagaatttgaattgaagataaaagaagaagaagataggagggcaatggaattgcaggggggaatccctctgctaatgcatcaatacaaagcattatttaagaaaaatttgttgcttgcattgcgtaacaagcccgcaacattcctacagctcttctcatctttcttcttcattttccttctattctgcatcaaattatctgatgaatcgcgcaatgcagataacacctttgctaaagaattgcgcgatcctaagcctattattgcgccacctataccaccttgtgaggacaaggtctatattaagactccatgctatgacttcatttggagtggaaaacatagtaaaactattggggatgttgataagggaattatggcaaataatcctggtaggcctattcctgccgacaaggttctagcatttaacacagcacaggatgtggatgaatggctattcgataatcctgtgcgttgtcctgcagctgtgcactgtacaatagtgaaggggaataaaattagttatggtattcagacaaactccacggatgtagtgaaacgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83333" stop="84591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83633" g_stop="84051" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84052" i_stop="84142" i_length="91">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84143" g_stop="84291" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="568" r_length="149" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E360897" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83633" e_stop="84051"/>
          <exon e_start="84143" e_stop="84291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAGAAGAATTTGAATTGAAGATAAAAGAAGAAGAAGATAGAAGGGCAATGGAATTGCAGGGGGGAATCCCTCTGCTAATGCAGCAATACAAAGCATTATTTAAGAAAAATTTGTTGCTTGCATTGCGTAACAAGCCCGCAACGTTCCTACAGCTCTTCTCATCTTTCTTCTTCATTTTCCTTCTATTCTGCATCAAATTATCTGATGAATCGCGCAATGCAGATAACACCTTTGCTAAAGAATTGCGCGATCCTAAGCCTCTTATGGCGCCATCTATCCCACCTTGTGAGGACAAGTTTTATATTAAGACTCCATGCTATGATTTCATTTGGAGTGGAAAACATAGTAAAACTATTGGGGATGTTGTTAAGGGAATTATGGCAAATAATCCTGGTAGGCCTATTCCTGCCAACAAGGTAACTATGCTGGATCAATTACGCATATGTTAAAATTCATATATCGTATTTTTGATTTGATGAATTGACAGTTAAAATTTTGTTGTTCCAGGTTCTAGCATTTAACACAGCACAGGATGTGGATAAATGGCTTTTCGATAATCCTGTGCGTTGTCCTGCAGCTGTGCACTTCACAATAGTGAAGGGGAATAAAATTAGTTATGGTATTCAGACAAACTCCACGGATGTAGTGAAACGAGG</genome_strand>
        <mrna_strand>AAGTGAAAGAATTTGAATTGAAGATAAAAGAAGAAGAAGATAGGAGGGCAATGGAATTGCAGGGGGGAATCCCTCTGCTAATGCATCAATACAAAGCATTATTTAAGAAAAATTTGTTGCTTGCATTGCGTAACAAGCCCGCAACATTCCTACAGCTCTTCTCATCTTTCTTCTTCATTTTCCTTCTATTCTGCATCAAATTATCTGATGAATCGCGCAATGCAGATAACACCTTTGCTAAAGAATTGCGCGATCCTAAGCCTATTATTGCGCCACCTATACCACCTTGTGAGGACAAGGTCTATATTAAGACTCCATGCTATGACTTCATTTGGAGTGGAAAACATAGTAAAACTATTGGGGATGTTGATAAGGGAATTATGGCAAATAATCCTGGTAGGCCTATTCCTGCCGACAAG...........................................................................................GTTCTAGCATTTAACACAGCACAGGATGTGGATGAATGGCTATTCGATAATCCTGTGCGTTGTCCTGCAGCTGTGCACTGTACAATAGTGAAGGGGAATAAAATTAGTTATGGTATTCAGACAAACTCCACGGATGTAGTGAAACGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364557" ref_strand="+" ref_description="SGN-E364557 [cLPP-18-B16]">
      <seq>aagaatttgaattgaagataaaagaagaagaagataggagggcaatggaattgcaggggggaatccctctgctaatgcagcaatacaaagcattatttaagaaaaatttgttgcttgcattgcgtaacaagcccgcaacattcctacagctcttctcatctttcttcttcattttccttctattctgcatcaaattatctgatgaatcgcgcaatgcagataacacctttgctaaagaattgcgcgatcctaagcctcttattgcgccacctatcccaccttgtgaggacaagttttatattaagactccatgctatgatttcatttggagtggaaaacatagtaaaactattggggatgttgttaagggaattatggcaaataatcctggtaggcctattcctgccgacaaggttctagcatttaacacagcacaggatgtggataaatggcttttcgataatcctgtgcgttgtcctgcagctgtgcacttcacaatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83339" stop="84531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83639" g_stop="84051" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84052" i_stop="84142" i_length="91">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84143" g_stop="84231" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="502" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E364557" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83639" e_stop="84051"/>
          <exon e_start="84143" e_stop="84231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATTTGAATTGAAGATAAAAGAAGAAGAAGATAGAAGGGCAATGGAATTGCAGGGGGGAATCCCTCTGCTAATGCAGCAATACAAAGCATTATTTAAGAAAAATTTGTTGCTTGCATTGCGTAACAAGCCCGCAACGTTCCTACAGCTCTTCTCATCTTTCTTCTTCATTTTCCTTCTATTCTGCATCAAATTATCTGATGAATCGCGCAATGCAGATAACACCTTTGCTAAAGAATTGCGCGATCCTAAGCCTCTTATGGCGCCATCTATCCCACCTTGTGAGGACAAGTTTTATATTAAGACTCCATGCTATGATTTCATTTGGAGTGGAAAACATAGTAAAACTATTGGGGATGTTGTTAAGGGAATTATGGCAAATAATCCTGGTAGGCCTATTCCTGCCAACAAGGTAACTATGCTGGATCAATTACGCATATGTTAAAATTCATATATCGTATTTTTGATTTGATGAATTGACAGTTAAAATTTTGTTGTTCCAGGTTCTAGCATTTAACACAGCACAGGATGTGGATAAATGGCTTTTCGATAATCCTGTGCGTTGTCCTGCAGCTGTGCACTTCACAATAGT</genome_strand>
        <mrna_strand>AAGAATTTGAATTGAAGATAAAAGAAGAAGAAGATAGGAGGGCAATGGAATTGCAGGGGGGAATCCCTCTGCTAATGCAGCAATACAAAGCATTATTTAAGAAAAATTTGTTGCTTGCATTGCGTAACAAGCCCGCAACATTCCTACAGCTCTTCTCATCTTTCTTCTTCATTTTCCTTCTATTCTGCATCAAATTATCTGATGAATCGCGCAATGCAGATAACACCTTTGCTAAAGAATTGCGCGATCCTAAGCCTCTTATTGCGCCACCTATCCCACCTTGTGAGGACAAGTTTTATATTAAGACTCCATGCTATGATTTCATTTGGAGTGGAAAACATAGTAAAACTATTGGGGATGTTGTTAAGGGAATTATGGCAAATAATCCTGGTAGGCCTATTCCTGCCGACAAG...........................................................................................GTTCTAGCATTTAACACAGCACAGGATGTGGATAAATGGCTTTTCGATAATCCTGTGCGTTGTCCTGCAGCTGTGCACTTCACAATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360779" ref_strand="+" ref_description="SGN-E360779 [cLPP-7-I10]">
      <seq>aaagaatttgaattgaacataaaagaagaagaagataggagggcaatggaattgcaggggggaatccctctgctaatgcagcaatacaaagcattatttaagaaaaatttgttgcttgcattgcgtaacaagcccgcaacattcctacagctcttctcatctttcttcttcattttccttctattctgcatcaaattatctgatgaatcgcgcaatgcagataacacctttgctaaagaattgcgcgatcctaagcctcttattgcgccacctatcccaccttgtgaggacaagttttatattaagactccatgctatgatttcatttggagtggaaaacatagtaaaactattggggatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83339" stop="84300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83639" g_stop="84000" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="363" r_length="362" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E360779" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83639" e_stop="84000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATTTGAATTGAAGATAAAAGAAGAAGAAGATAGAAGGGCAATGGAATTGCAGGGGGGAATCCCTCTGCTAATGCAGCAATACAAAGCATTATTTAAGAAAAATTTGTTGCTTGCATTGCGTAACAAGCCCGCAACGTTCCTACAGCTCTTCTCATCTTTCTTCTTCATTTTCCTTCTATTCTGCATCAAATTATCTGATGAATCGCGCAATGCAGATAACACCTTTGCTAAAGAATTGCGCGATCCTAAGCCTCTTATGGCGCCATCTATCCCACCTTGTGAGGACAAGTTTTATATTAAGACTCCATGCTATGATTTCATTTGGAGTGGAAAACATAGTAAAACTATTGGGGATGTT</genome_strand>
        <mrna_strand>AAGAATTTGAATTGAACATAAAAGAAGAAGAAGATAGGAGGGCAATGGAATTGCAGGGGGGAATCCCTCTGCTAATGCAGCAATACAAAGCATTATTTAAGAAAAATTTGTTGCTTGCATTGCGTAACAAGCCCGCAACATTCCTACAGCTCTTCTCATCTTTCTTCTTCATTTTCCTTCTATTCTGCATCAAATTATCTGATGAATCGCGCAATGCAGATAACACCTTTGCTAAAGAATTGCGCGATCCTAAGCCTCTTATTGCGCCACCTATCCCACCTTGTGAGGACAAGTTTTATATTAAGACTCCATGCTATGATTTCATTTGGAGTGGAAAACATAGTAAAACTATTGGGGATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362479" ref_strand="+" ref_description="SGN-E362479 [cLPP-1-P21]">
      <seq>atttgaattgaagataaaagaagaagaagataggagggcaatggaattgcaggggggaatccctctgctaatgcagcaatacaaagcattatttaagaaaaatttgttgcttgcattgcgtaacaagcccgcaacattcctacagctcttctcatctttcttcttcattttccttctattctgcatcaaattatctgatgaatcgcgcaatgcagataacacctttgctaaagaattgcgcgatcctaagcctcttattgcgccacctatcccaccttgtgaggacaagttttatattaagactccatgctatgatttcatttggagtggaaaacatagtaaaactattggggatgttgttaagggaattatggcaaataatcctggtaggcctattcctgccgacaaggttctagcatttaacacagcacaggatgtggataaatggcttttcgataatcctgtgcgttgtcctgcagctgtgcacttcacaatagtgaaggggaataaaattagttatggtattcagacaaactccacggatgtagtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83343" stop="84586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83643" g_stop="84051" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84052" i_stop="84142" i_length="91">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84143" g_stop="84286" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="553" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E362479" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83643" e_stop="84051"/>
          <exon e_start="84143" e_stop="84286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGAATTGAAGATAAAAGAAGAAGAAGATAGAAGGGCAATGGAATTGCAGGGGGGAATCCCTCTGCTAATGCAGCAATACAAAGCATTATTTAAGAAAAATTTGTTGCTTGCATTGCGTAACAAGCCCGCAACGTTCCTACAGCTCTTCTCATCTTTCTTCTTCATTTTCCTTCTATTCTGCATCAAATTATCTGATGAATCGCGCAATGCAGATAACACCTTTGCTAAAGAATTGCGCGATCCTAAGCCTCTTATGGCGCCATCTATCCCACCTTGTGAGGACAAGTTTTATATTAAGACTCCATGCTATGATTTCATTTGGAGTGGAAAACATAGTAAAACTATTGGGGATGTTGTTAAGGGAATTATGGCAAATAATCCTGGTAGGCCTATTCCTGCCAACAAGGTAACTATGCTGGATCAATTACGCATATGTTAAAATTCATATATCGTATTTTTGATTTGATGAATTGACAGTTAAAATTTTGTTGTTCCAGGTTCTAGCATTTAACACAGCACAGGATGTGGATAAATGGCTTTTCGATAATCCTGTGCGTTGTCCTGCAGCTGTGCACTTCACAATAGTGAAGGGGAATAAAATTAGTTATGGTATTCAGACAAACTCCACGGATGTAGTGAAA</genome_strand>
        <mrna_strand>ATTTGAATTGAAGATAAAAGAAGAAGAAGATAGGAGGGCAATGGAATTGCAGGGGGGAATCCCTCTGCTAATGCAGCAATACAAAGCATTATTTAAGAAAAATTTGTTGCTTGCATTGCGTAACAAGCCCGCAACATTCCTACAGCTCTTCTCATCTTTCTTCTTCATTTTCCTTCTATTCTGCATCAAATTATCTGATGAATCGCGCAATGCAGATAACACCTTTGCTAAAGAATTGCGCGATCCTAAGCCTCTTATTGCGCCACCTATCCCACCTTGTGAGGACAAGTTTTATATTAAGACTCCATGCTATGATTTCATTTGGAGTGGAAAACATAGTAAAACTATTGGGGATGTTGTTAAGGGAATTATGGCAAATAATCCTGGTAGGCCTATTCCTGCCGACAAG...........................................................................................GTTCTAGCATTTAACACAGCACAGGATGTGGATAAATGGCTTTTCGATAATCCTGTGCGTTGTCCTGCAGCTGTGCACTTCACAATAGTGAAGGGGAATAAAATTAGTTATGGTATTCAGACAAACTCCACGGATGTAGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373720" ref_strand="+" ref_description="SGN-E373720 [TUS-33-O6]">
      <seq>ttgaattgaagataaaagaagaagaagataggagggcaatggaattgcaggggggaatccctctgctaatgcagcaatacaaagcattatttaagaaaaatttgttgcttgcattgcgtaacaagcccgcaacattcctacagctcttctcatctttcttcttcattttccttctattctgcatcaaattatctgatgaatcgcgcaatgcagataacacctttgctaaagaattgcgcgatcctaagcctcttattgcgccacctatcccaccttgtgaggacaagttttatattaagactccatgctatgatttcatttggagtggaaaacatagtaaaactattggggatgttgttaagggaattatggcaaataatcctggtaggcctattcctgccgacaaggttctagcatttaacacagcacaggatgtggataaatggcttttcgataatcctgtgcgttgtcctgcagctgtgcacttcacaatagtgaaggggaataaaattagttatggtattcagacaaactccacggatgtagtgaaacgaggagtaactgaggatccaacttttaagttccaaatcccacttcaaatggcagcagaacgtgaaatcgcgaggaatctgattggagatccaaatttcccctgggatgtcagtttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83345" stop="84786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83645" g_stop="84051" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84052" i_stop="84142" i_length="91">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84143" g_stop="84374" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="639" r_length="232" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84375" i_stop="84456" i_length="82">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84457" g_stop="84486" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="669" r_length="30" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E373720" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83645" e_stop="84051"/>
          <exon e_start="84143" e_stop="84374"/>
          <exon e_start="84457" e_stop="84486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATTGAAGATAAAAGAAGAAGAAGATAGAAGGGCAATGGAATTGCAGGGGGGAATCCCTCTGCTAATGCAGCAATACAAAGCATTATTTAAGAAAAATTTGTTGCTTGCATTGCGTAACAAGCCCGCAACGTTCCTACAGCTCTTCTCATCTTTCTTCTTCATTTTCCTTCTATTCTGCATCAAATTATCTGATGAATCGCGCAATGCAGATAACACCTTTGCTAAAGAATTGCGCGATCCTAAGCCTCTTATGGCGCCATCTATCCCACCTTGTGAGGACAAGTTTTATATTAAGACTCCATGCTATGATTTCATTTGGAGTGGAAAACATAGTAAAACTATTGGGGATGTTGTTAAGGGAATTATGGCAAATAATCCTGGTAGGCCTATTCCTGCCAACAAGGTAACTATGCTGGATCAATTACGCATATGTTAAAATTCATATATCGTATTTTTGATTTGATGAATTGACAGTTAAAATTTTGTTGTTCCAGGTTCTAGCATTTAACACAGCACAGGATGTGGATAAATGGCTTTTCGATAATCCTGTGCGTTGTCCTGCAGCTGTGCACTTCACAATAGTGAAGGGGAATAAAATTAGTTATGGTATTCAGACAAACTCCACGGATGTAGTGAAACGAGGAGTAACTGAGGATCCAACTTTTAAGTTCCAAATCCCACTTCAAATAGCAGTAGAACGTGAAATCGCGAGGAATCTGATTGGAGGTACATATACTTTTTCTTAAGCACATCACACCTTTGTTTGTGCTGTGTTTTAATTTACTAACTTTTTATAATACATTTTCAGATCCAAAATTCCCCTGGGATGTCAGTTTTA</genome_strand>
        <mrna_strand>TTGAATTGAAGATAAAAGAAGAAGAAGATAGGAGGGCAATGGAATTGCAGGGGGGAATCCCTCTGCTAATGCAGCAATACAAAGCATTATTTAAGAAAAATTTGTTGCTTGCATTGCGTAACAAGCCCGCAACATTCCTACAGCTCTTCTCATCTTTCTTCTTCATTTTCCTTCTATTCTGCATCAAATTATCTGATGAATCGCGCAATGCAGATAACACCTTTGCTAAAGAATTGCGCGATCCTAAGCCTCTTATTGCGCCACCTATCCCACCTTGTGAGGACAAGTTTTATATTAAGACTCCATGCTATGATTTCATTTGGAGTGGAAAACATAGTAAAACTATTGGGGATGTTGTTAAGGGAATTATGGCAAATAATCCTGGTAGGCCTATTCCTGCCGACAAG...........................................................................................GTTCTAGCATTTAACACAGCACAGGATGTGGATAAATGGCTTTTCGATAATCCTGTGCGTTGTCCTGCAGCTGTGCACTTCACAATAGTGAAGGGGAATAAAATTAGTTATGGTATTCAGACAAACTCCACGGATGTAGTGAAACGAGGAGTAACTGAGGATCCAACTTTTAAGTTCCAAATCCCACTTCAAATGGCAGCAGAACGTGAAATCGCGAGGAATCTGATTGGAG..................................................................................ATCCAAATTTCCCCTGGGATGTCAGTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363083" ref_strand="+" ref_description="SGN-E363083 [cLPP-2-P12]">
      <seq>ttgaattgtatatgactgaagaagaagataggagggcaatggaattgcaggggggaatccctctgctaatgcagcaatacaaagcattatttaagaaaaatttgttgcttgcattgcgtaacaagcccgcaacattcctacagctcttctcatctttcttcttcattttccttctattctgcatcaaattatctgatgaatcgcgcaatgcagataacacctttgctaaagaattgcgcgatcctaagcctcttattgcgccacctatcccaccttgtgaggacaagttttatattaagactccatgctatgatttcatttggagtggaaaacatagtaaaactattggggatgttgttaagggaattatggcaaataatcctggtaggcctattcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83345" stop="84342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83645" g_stop="84042" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E363083" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83645" e_stop="84042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATTGAAGATAAAAGAAGAAGAAGATAGAAGGGCAATGGAATTGCAGGGGGGAATCCCTCTGCTAATGCAGCAATACAAAGCATTATTTAAGAAAAATTTGTTGCTTGCATTGCGTAACAAGCCCGCAACGTTCCTACAGCTCTTCTCATCTTTCTTCTTCATTTTCCTTCTATTCTGCATCAAATTATCTGATGAATCGCGCAATGCAGATAACACCTTTGCTAAAGAATTGCGCGATCCTAAGCCTCTTATGGCGCCATCTATCCCACCTTGTGAGGACAAGTTTTATATTAAGACTCCATGCTATGATTTCATTTGGAGTGGAAAACATAGTAAAACTATTGGGGATGTTGTTAAGGGAATTATGGCAAATAATCCTGGTAGGCCTATTCCT</genome_strand>
        <mrna_strand>TTGAATTGTATATGACTGAAGAAGAAGATAGGAGGGCAATGGAATTGCAGGGGGGAATCCCTCTGCTAATGCAGCAATACAAAGCATTATTTAAGAAAAATTTGTTGCTTGCATTGCGTAACAAGCCCGCAACATTCCTACAGCTCTTCTCATCTTTCTTCTTCATTTTCCTTCTATTCTGCATCAAATTATCTGATGAATCGCGCAATGCAGATAACACCTTTGCTAAAGAATTGCGCGATCCTAAGCCTCTTATTGCGCCACCTATCCCACCTTGTGAGGACAAGTTTTATATTAAGACTCCATGCTATGATTTCATTTGGAGTGGAAAACATAGTAAAACTATTGGGGATGTTGTTAAGGGAATTATGGCAAATAATCCTGGTAGGCCTATTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362204" ref_strand="+" ref_description="SGN-E362204 [cLPP-11-F12]">
      <seq>gcaatgcagataacacctttgctaaagaattgcgcgatcctaagcctcttattgcgccacctatcccaccttgtgaggacaagttttatattaagactccatgctatgatttcatttggagtggaaaacatagtaaaactattggggatgttgttaagggaattatggcaaataatcctggtaggcctattcctgccgacaaggttctagcatttaacacagcacaggatgtggataaatggcttttcgataatcctgtgcgttgtcctgcagctgtgcacttcacaatagtgaaggggaataaaattagttatggtattcagacaaactccacggatgtagtgaaacgaggagtaactgaggatccaacttttaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83549" stop="84618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83849" g_stop="84051" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84052" i_stop="84142" i_length="91">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84143" g_stop="84318" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="379" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E362204" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83849" e_stop="84051"/>
          <exon e_start="84143" e_stop="84318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATGCAGATAACACCTTTGCTAAAGAATTGCGCGATCCTAAGCCTCTTATGGCGCCATCTATCCCACCTTGTGAGGACAAGTTTTATATTAAGACTCCATGCTATGATTTCATTTGGAGTGGAAAACATAGTAAAACTATTGGGGATGTTGTTAAGGGAATTATGGCAAATAATCCTGGTAGGCCTATTCCTGCCAACAAGGTAACTATGCTGGATCAATTACGCATATGTTAAAATTCATATATCGTATTTTTGATTTGATGAATTGACAGTTAAAATTTTGTTGTTCCAGGTTCTAGCATTTAACACAGCACAGGATGTGGATAAATGGCTTTTCGATAATCCTGTGCGTTGTCCTGCAGCTGTGCACTTCACAATAGTGAAGGGGAATAAAATTAGTTATGGTATTCAGACAAACTCCACGGATGTAGTGAAACGAGGAGTAACTGAGGATCCAACTTTTAAGTT</genome_strand>
        <mrna_strand>GCAATGCAGATAACACCTTTGCTAAAGAATTGCGCGATCCTAAGCCTCTTATTGCGCCACCTATCCCACCTTGTGAGGACAAGTTTTATATTAAGACTCCATGCTATGATTTCATTTGGAGTGGAAAACATAGTAAAACTATTGGGGATGTTGTTAAGGGAATTATGGCAAATAATCCTGGTAGGCCTATTCCTGCCGACAAG...........................................................................................GTTCTAGCATTTAACACAGCACAGGATGTGGATAAATGGCTTTTCGATAATCCTGTGCGTTGTCCTGCAGCTGTGCACTTCACAATAGTGAAGGGGAATAAAATTAGTTATGGTATTCAGACAAACTCCACGGATGTAGTGAAACGAGGAGTAACTGAGGATCCAACTTTTAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219922" ref_strand="-" ref_description="SGN-E219922 [cLEL-24-C3](-)">
      <seq>catattccaataaacacaggatttattggtcattgttcccaccaaatcttcttactataggtcttcagttacttgctaaagcaactgaaagtcctaaagatccaggtattagctggagtactagggcaaaatgtttacctaaagaaccagactgtgtaactaccatgcatgatgtgtatatactacttgtgaaaacattttttttctggctcgttctggctatatacttcgacaacataattccaaatatatctggtgtgagaaagtcaaaattatacttcctatatcctggctactggactggaaatggtggaagtagtgtgaaagagggaggaaactgtagcatctgttcaggctcattgccacggctggatcctattacaccagatgacgaagacgttcttacagaagaaaacactgttaaaaagcaagctatggaaggtgacaattccaacaatgcagttcaaatacgcggtcttattaagacatatcctggaaagaaacaggtggctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84998" stop="86281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85298" g_stop="85464" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85465" i_stop="85542" i_length="78">
            <donor d_prob="0.540" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85543" g_stop="85702" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="327" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85703" i_stop="85792" i_length="90">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85793" g_stop="85981" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="515" r_length="188" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E219922" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219922" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="85298" e_stop="85464"/>
          <exon e_start="85543" e_stop="85702"/>
          <exon e_start="85793" e_stop="85981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATTCCAATAAACACAGGATTTATTGGTCATTGTTCCCACCAAATCTTCTTACTATAGGTCTTCAGTTACTTGCTAAAGCAACTGAAAGTCCTAAAGATCCAGGTATTAGCTGGAGTACTAGGGCAAAATGTTTACCTAAAGAACCAGACTGTGTAACTACCATGGTACGTCTAGCGCCACCTGTGGTCTTTGCCTCATCTGTTTTCTTCTTGCAACTAATATATTTCCCCTTATGTTAACAGCATGATGTGTATATACTACTTGTGAAAACATTTTTTTTCTGGCTCGTTCTGGCTATATACTTCGACAACATAATTCCAAATATATCTGGTGTGAGAAAGTCAAAATTATACTTCCTATATCCTGGCTACTGGACTGGAAATGGTGGAAGTAGTGTGAAAGGTAAACTCTACGTACACTCCCACTTTACTGTACTATCTATTCGTTCTGTAAGCTGTAAAAATCTGATTATTCTGTTCCTTCTAATGTTAGAGGGAGGAAACTGTAGCATCTGTTCAGGCTCATTGCCACGGCTGGATCCTATTACACCAGATGACGAAGACGTTCTTACAGAAGAAAACACTGTTAAAAAGCAAGCTATGGAAGGTGACAATTCCAACAATGCAGTTCAAATACGCGGTCTTATTAAGACATATCCTGGAAAGAAAACAGGTGGCTGCT</genome_strand>
        <mrna_strand>CATATTCCAATAAACACAGGATTTATTGGTCATTGTTCCCACCAAATCTTCTTACTATAGGTCTTCAGTTACTTGCTAAAGCAACTGAAAGTCCTAAAGATCCAGGTATTAGCTGGAGTACTAGGGCAAAATGTTTACCTAAAGAACCAGACTGTGTAACTACCATG..............................................................................CATGATGTGTATATACTACTTGTGAAAACATTTTTTTTCTGGCTCGTTCTGGCTATATACTTCGACAACATAATTCCAAATATATCTGGTGTGAGAAAGTCAAAATTATACTTCCTATATCCTGGCTACTGGACTGGAAATGGTGGAAGTAGTGTGAAAG..........................................................................................AGGGAGGAAACTGTAGCATCTGTTCAGGCTCATTGCCACGGCTGGATCCTATTACACCAGATGACGAAGACGTTCTTACAGAAGAAAACACTGTTAAAAAGCAAGCTATGGAAGGTGACAATTCCAACAATGCAGTTCAAATACGCGGTCTTATTAAGACATATCCTGGAAAG-AAACAGGTGGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219778" ref_strand="-" ref_description="SGN-E219778 [cLEL-24-C3](-)">
      <seq>catattccaataaacacttgttttattggtcattgctcccaccaaatcttcttactataggtcttcagttacttgctaaagcaactgaaagtcctaaagatccaggtattagctggagtactagggcaaaatgtttacctaaagaaccagactgtgtaactaccatgcatgatgtgtatatactacttgtgaaaacattttttttctggctcgttctggctatatacttcgacaacataattccaaatatatctggtgtgagaaagtcaaaattatacttcctatatcctggctactggactggaaatggtggaagtagtgtgaaagagggaggaaactgtagcatctgttcaggctcattgccacggctggatcctattacaccagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84998" stop="86155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85298" g_stop="85464" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85465" i_stop="85542" i_length="78">
            <donor d_prob="0.540" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85543" g_stop="85702" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="327" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85703" i_stop="85792" i_length="90">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85793" g_stop="85855" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="390" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E219778" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219778" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="85298" e_stop="85464"/>
          <exon e_start="85543" e_stop="85702"/>
          <exon e_start="85793" e_stop="85855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATTCCAATAAACACAGGATTTATTGGTCATTGTTCCCACCAAATCTTCTTACTATAGGTCTTCAGTTACTTGCTAAAGCAACTGAAAGTCCTAAAGATCCAGGTATTAGCTGGAGTACTAGGGCAAAATGTTTACCTAAAGAACCAGACTGTGTAACTACCATGGTACGTCTAGCGCCACCTGTGGTCTTTGCCTCATCTGTTTTCTTCTTGCAACTAATATATTTCCCCTTATGTTAACAGCATGATGTGTATATACTACTTGTGAAAACATTTTTTTTCTGGCTCGTTCTGGCTATATACTTCGACAACATAATTCCAAATATATCTGGTGTGAGAAAGTCAAAATTATACTTCCTATATCCTGGCTACTGGACTGGAAATGGTGGAAGTAGTGTGAAAGGTAAACTCTACGTACACTCCCACTTTACTGTACTATCTATTCGTTCTGTAAGCTGTAAAAATCTGATTATTCTGTTCCTTCTAATGTTAGAGGGAGGAAACTGTAGCATCTGTTCAGGCTCATTGCCACGGCTGGATCCTATTACACCAGATG</genome_strand>
        <mrna_strand>CATATTCCAATAAACACTTGTTTTATTGGTCATTGCTCCCACCAAATCTTCTTACTATAGGTCTTCAGTTACTTGCTAAAGCAACTGAAAGTCCTAAAGATCCAGGTATTAGCTGGAGTACTAGGGCAAAATGTTTACCTAAAGAACCAGACTGTGTAACTACCATG..............................................................................CATGATGTGTATATACTACTTGTGAAAACATTTTTTTTCTGGCTCGTTCTGGCTATATACTTCGACAACATAATTCCAAATATATCTGGTGTGAGAAAGTCAAAATTATACTTCCTATATCCTGGCTACTGGACTGGAAATGGTGGAAGTAGTGTGAAAG..........................................................................................AGGGAGGAAACTGTAGCATCTGTTCAGGCTCATTGCCACGGCTGGATCCTATTACACCAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549537" ref_strand="+" ref_description="SGN-E549537 [TUS-71-F8]">
      <seq>gcccaatggagctggaaaaactactactataagttgtttgactgggattaatcctgttacagcaggagatgcattggtatatgatcagtccatacgaagctctatgggcatgacaaacattcgaaggatgatgggagtttgcccccagtttgatattctttgggattcattatccggacaagagaaccttcagatttttgccaacattaaaggtctaccgcctgcttcaatagacacggtggtagctcaactattatcccagtcaaaaatcaccaaggtgtcagccaagatgagatcttgtagttacagtggaggaatgaaacgacgtcttagtgttgctatagcccttattggagatccaaagttggttattttggatgaaccgactactggtatggatccaattactcgaaggcacgtttgggacattatcgagaaagccaaaaaaggacgtgccattatcttgacaacccattcaatggaagaagctgatgtcttaagtgatcgtattggtatcatggcaaagggaaggcttcgttgcattggaacttccataaggttgaaagcaaaatttggtactggtttcattgctaatgtgggcttagttagtgaatcaacatctcctgatgctgtgaaacacttcttcaaaagtcaattggatgtggtgcctaaagatgaaaataagtgcttccttacctatgttattcctcatgaaagggaaaagatgttgacggaattctttgctgagctcaagctagacaaagtgagttcggtgtaaaagcatccagctaggtcttactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86160" stop="88458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86460" g_stop="86530" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86531" i_stop="86917" i_length="387">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.390" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86918" g_stop="86993" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="148" r_length="77" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86994" i_stop="87117" i_length="124">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87118" g_stop="87207" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="238" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87208" i_stop="87313" i_length="106">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87314" g_stop="87460" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="385" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87461" i_stop="87553" i_length="93">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87554" g_stop="87820" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="652" r_length="267" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87821" i_stop="87913" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87914" g_stop="87994" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="733" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="87995" i_stop="88086" i_length="92">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="88087" g_stop="88158" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="734" r_stop="803" r_length="70" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E549537" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86460" e_stop="86530"/>
          <exon e_start="86918" e_stop="86993"/>
          <exon e_start="87118" e_stop="87207"/>
          <exon e_start="87314" e_stop="87460"/>
          <exon e_start="87554" e_stop="87820"/>
          <exon e_start="87914" e_stop="87994"/>
          <exon e_start="88087" e_stop="88158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCAATGGTGCTGGAAAAACTACTACTATAAGTTGTTTGACTGGGATTAATCCTGTTACAGCAGGAGATGGTAATAGCTTTGATCTCAACTTTTTATCATATTTTATGTTCATTAAAGTTGCTGTTGAATGCCTTGAATCGGACCCGCTACAAACAGAAAGGACGGTATACAATGTTGTTGTATTGGGCCCTTAATTTTCTATTGATTCTGTATGTTGGGCCCAAGCCTGTTAGGGCGTAGCTTAGCACTATATATAGACGCTATGGGAAACCCTATTCTGTAATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCGTGGACGTAGCCAATTTATTAGTGAACCACGTAAATCTATTGTCTTGTTTTTCGCGTTTATATTTTCTCGTATTATCTCAAATTCCGCACAACAGTTGCATATGTGTAACATGAAGCATTTTTCAACAGCGTTGGTATATGATCAGTCCATACGAAGCTCTATGGGCATGACAAAC-GTCGAAGGATGATGGGAGTTTGCCCCCAGGTAACGTATCTATTCTTTTCATTTTTTCTTCTTGTTATTTTCTGTTTTCAAGTCTTCAATGGAACCAGCTGATAGCATACTGCCTTTTATATTGTAGAAATTGATTCATTTTTTCATTTTATAGTTTGATATTCTTTGGGATGCATTATCCGGACAAGAGAACCTTCAGATTTTTGCCAACATTAAAGGTCTACCGCCTGCTTCAATAGACACGGTATTGCAAATAAGCCTAAACTATATCGATCCTTCTATATCTTTATAAAGATTCTATGAACTAGCTGTTTAACTCTTATCAAACTGAACTCTTCAATCGAAAACAGGTGGTAGCTCAACTATTATCCCAGTCGAAAATCACCAAGGTGTCAGCCAAGATGAGATCTTGTAGTTACAGTGGAGGAATGAAACGACGTCTTAGTGTTGCTATAGCCCTTATTGGAGATCCAAAGTTGGTTATTTTGGATGAACCGGTAGGTACTGGGAGTTTAAAATTCTTTTCGTATGATGTTTTATCAGCTTTTATGCTTCTGTTTTAACAGTTCCTTTCCCTGATATCTTTATAGACTACTGGTATGGATCCAATTACTCGAAGGCACGTTTGGGACATTATAGAGAAAGCCAAAAAAGGACGTGTCATTATCTTGACAACCCATTCAATGGAAGAAGCTGATGTCTTAAGTGATCGTATTGGTATCATGGCAAAGGGAAGGCTTCGTTGCATTGGAACTTCCATAAGGTTGAAAGCAAAATTTGGTACTGGTTTCATTGCTAATGTGGGCTTAGTTAGTGAATCAACATCTCCTGATGCTGTGAAACACTTCTTCAAAAGTGTATGTCAAAAGCTACTTCCTCTTACCTTTTGTTTTCTTTTCAATCTTCTCTCTTAAGTACTGTTTAAAGCTAACATATAACTCTGTTGACAGCAATTGGATGTGGTGCCTAAAGATGAAAATAAGTGCTTCCTTACCTATGTTATTCCTCATGAAAGGGAAAAGATGTTGACGGTAATATCTACAATAACTCAAGGATTTAACTTATAATACACTTCACGATGTTTAGCTTCTCACATTCCAATATTGGCTTTTACATCTATCAGGAATTCTTTGCTGAGCTTCAAGCTAGACAAAGTGAGTTCGGTGTAAAAGACATCCAGCTAGGTCTTACTACT</genome_strand>
        <mrna_strand>GCCCAATGGAGCTGGAAAAACTACTACTATAAGTTGTTTGACTGGGATTAATCCTGTTACAGCAGGAGATG...................................................................................................................................................................................................................................................................................................................................................................................................CATTGGTATATGATCAGTCCATACGAAGCTCTATGGGCATGACAAACATTCGAAGGATGATGGGAGTTTGCCCCCAG............................................................................................................................TTTGATATTCTTTGGGATTCATTATCCGGACAAGAGAACCTTCAGATTTTTGCCAACATTAAAGGTCTACCGCCTGCTTCAATAGACACG..........................................................................................................GTGGTAGCTCAACTATTATCCCAGTCAAAAATCACCAAGGTGTCAGCCAAGATGAGATCTTGTAGTTACAGTGGAGGAATGAAACGACGTCTTAGTGTTGCTATAGCCCTTATTGGAGATCCAAAGTTGGTTATTTTGGATGAACCG.............................................................................................ACTACTGGTATGGATCCAATTACTCGAAGGCACGTTTGGGACATTATCGAGAAAGCCAAAAAAGGACGTGCCATTATCTTGACAACCCATTCAATGGAAGAAGCTGATGTCTTAAGTGATCGTATTGGTATCATGGCAAAGGGAAGGCTTCGTTGCATTGGAACTTCCATAAGGTTGAAAGCAAAATTTGGTACTGGTTTCATTGCTAATGTGGGCTTAGTTAGTGAATCAACATCTCCTGATGCTGTGAAACACTTCTTCAAAAGT.............................................................................................CAATTGGATGTGGTGCCTAAAGATGAAAATAAGTGCTTCCTTACCTATGTTATTCCTCATGAAAGGGAAAAGATGTTGACG............................................................................................GAATTCTTTGCTGAGC-TCAAGCTAGACAAAGTGAGTTCGGTGTAAAAG-CATCCAGCTAGGTCTTACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360925" ref_strand="+" ref_description="SGN-E360925 [cLPP-13-A16]">
      <seq>cccaatggagctggaaaaactactactataagttgtttgactgggattaatcctgttacagcaggagatgcattggtatatgatcagtccatacgaagctctatgggcatgacaaacattcgaaggatgatgggagtttgcccccagtttgatattctttgggattcattatccggacaagagaaccttcagatttttgccaacattaaaggtctaccgcctgcttcaatagacacggtggtagctcaactattatcccagtcaaaaatcaccaaggtgtcagccaagatgagatcttgtagttacagtggaggaatgaaacgacgtcttagtgttgctatagcccttattggagatccaaagttggttattttggatgaaccgactactggtatggatccaattactcgaaggcacgtttgggacattatcgagaaagccaaaaaaggacgtgccattatcttgacaacccattcaatggaagaagctgatgtcttaagtgatcgtattggtatcatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86161" stop="87990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86461" g_stop="86530" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86531" i_stop="86917" i_length="387">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.390" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86918" g_stop="86993" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="147" r_length="77" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86994" i_stop="87117" i_length="124">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87118" g_stop="87207" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="237" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87208" i_stop="87313" i_length="106">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87314" g_stop="87460" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="384" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87461" i_stop="87553" i_length="93">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87554" g_stop="87690" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="521" r_length="137" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E360925" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86461" e_stop="86530"/>
          <exon e_start="86918" e_stop="86993"/>
          <exon e_start="87118" e_stop="87207"/>
          <exon e_start="87314" e_stop="87460"/>
          <exon e_start="87554" e_stop="87690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATGGTGCTGGAAAAACTACTACTATAAGTTGTTTGACTGGGATTAATCCTGTTACAGCAGGAGATGGTAATAGCTTTGATCTCAACTTTTTATCATATTTTATGTTCATTAAAGTTGCTGTTGAATGCCTTGAATCGGACCCGCTACAAACAGAAAGGACGGTATACAATGTTGTTGTATTGGGCCCTTAATTTTCTATTGATTCTGTATGTTGGGCCCAAGCCTGTTAGGGCGTAGCTTAGCACTATATATAGACGCTATGGGAAACCCTATTCTGTAATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCGTGGACGTAGCCAATTTATTAGTGAACCACGTAAATCTATTGTCTTGTTTTTCGCGTTTATATTTTCTCGTATTATCTCAAATTCCGCACAACAGTTGCATATGTGTAACATGAAGCATTTTTCAACAGCGTTGGTATATGATCAGTCCATACGAAGCTCTATGGGCATGACAAAC-GTCGAAGGATGATGGGAGTTTGCCCCCAGGTAACGTATCTATTCTTTTCATTTTTTCTTCTTGTTATTTTCTGTTTTCAAGTCTTCAATGGAACCAGCTGATAGCATACTGCCTTTTATATTGTAGAAATTGATTCATTTTTTCATTTTATAGTTTGATATTCTTTGGGATGCATTATCCGGACAAGAGAACCTTCAGATTTTTGCCAACATTAAAGGTCTACCGCCTGCTTCAATAGACACGGTATTGCAAATAAGCCTAAACTATATCGATCCTTCTATATCTTTATAAAGATTCTATGAACTAGCTGTTTAACTCTTATCAAACTGAACTCTTCAATCGAAAACAGGTGGTAGCTCAACTATTATCCCAGTCGAAAATCACCAAGGTGTCAGCCAAGATGAGATCTTGTAGTTACAGTGGAGGAATGAAACGACGTCTTAGTGTTGCTATAGCCCTTATTGGAGATCCAAAGTTGGTTATTTTGGATGAACCGGTAGGTACTGGGAGTTTAAAATTCTTTTCGTATGATGTTTTATCAGCTTTTATGCTTCTGTTTTAACAGTTCCTTTCCCTGATATCTTTATAGACTACTGGTATGGATCCAATTACTCGAAGGCACGTTTGGGACATTATAGAGAAAGCCAAAAAAGGACGTGTCATTATCTTGACAACCCATTCAATGGAAGAAGCTGATGTCTTAAGTGATCGTATTGGTATCATGGC</genome_strand>
        <mrna_strand>CCCAATGGAGCTGGAAAAACTACTACTATAAGTTGTTTGACTGGGATTAATCCTGTTACAGCAGGAGATG...................................................................................................................................................................................................................................................................................................................................................................................................CATTGGTATATGATCAGTCCATACGAAGCTCTATGGGCATGACAAACATTCGAAGGATGATGGGAGTTTGCCCCCAG............................................................................................................................TTTGATATTCTTTGGGATTCATTATCCGGACAAGAGAACCTTCAGATTTTTGCCAACATTAAAGGTCTACCGCCTGCTTCAATAGACACG..........................................................................................................GTGGTAGCTCAACTATTATCCCAGTCAAAAATCACCAAGGTGTCAGCCAAGATGAGATCTTGTAGTTACAGTGGAGGAATGAAACGACGTCTTAGTGTTGCTATAGCCCTTATTGGAGATCCAAAGTTGGTTATTTTGGATGAACCG.............................................................................................ACTACTGGTATGGATCCAATTACTCGAAGGCACGTTTGGGACATTATCGAGAAAGCCAAAAAAGGACGTGCCATTATCTTGACAACCCATTCAATGGAAGAAGCTGATGTCTTAAGTGATCGTATTGGTATCATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365190" ref_strand="+" ref_description="SGN-E365190 [cLPP-17-P7]">
      <seq>ttttcgataatcctgtgcgttgaatcaccaaggtgtcagccaagatgagatcttgtagttacagtggaggaatgaaacgacgtcttagtgttgctatagcccttattggagatccaaagttggttattttggatgaaccgactactggtatggatccaattactcgaaggcacgtttgggacattatcgagaaagccaaaaaaggacgtgccattatcttgacaacccattcaatggaagaagctgatgtcttaagtgatcgtattggtatcatggcaaagggaaggcttcgttgcattggaacttccataaggttgaaagcaaaatttggtactggtttcattgctaatgtgggcttagttagtgaatcaacatctcctgatgctgtgaaacacttcttcaaaagtcaattggatgtggtgcctaaagatgaaaataagtgcttccttacctatgttattcctcatgaaagggaaaagatgttgacggaattctttgctgagcttcaagctagacaaagtgagttcggtgtaaaagacatccagctaggtcttactactcttgaagaagttttcatgaacatagctaaacaggcagatgtggaaactgcaatagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83883" stop="88516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87322" g_stop="87460" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87461" i_stop="87553" i_length="93">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87554" g_stop="87820" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="407" r_length="267" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87821" i_stop="87913" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87914" g_stop="87994" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="488" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87995" i_stop="88086" i_length="92">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88087" g_stop="88216" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="618" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E365190" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87322" e_stop="87460"/>
          <exon e_start="87554" e_stop="87820"/>
          <exon e_start="87914" e_stop="87994"/>
          <exon e_start="88087" e_stop="88216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTATTATCCCAGTCG-AAAATCACCAAGGTGTCAGCCAAGATGAGATCTTGTAGTTACAGTGGAGGAATGAAACGACGTCTTAGTGTTGCTATAGCCCTTATTGGAGATCCAAAGTTGGTTATTTTGGATGAACCGGTAGGTACTGGGAGTTTAAAATTCTTTTCGTATGATGTTTTATCAGCTTTTATGCTTCTGTTTTAACAGTTCCTTTCCCTGATATCTTTATAGACTACTGGTATGGATCCAATTACTCGAAGGCACGTTTGGGACATTATAGAGAAAGCCAAAAAAGGACGTGTCATTATCTTGACAACCCATTCAATGGAAGAAGCTGATGTCTTAAGTGATCGTATTGGTATCATGGCAAAGGGAAGGCTTCGTTGCATTGGAACTTCCATAAGGTTGAAAGCAAAATTTGGTACTGGTTTCATTGCTAATGTGGGCTTAGTTAGTGAATCAACATCTCCTGATGCTGTGAAACACTTCTTCAAAAGTGTATGTCAAAAGCTACTTCCTCTTACCTTTTGTTTTCTTTTCAATCTTCTCTCTTAAGTACTGTTTAAAGCTAACATATAACTCTGTTGACAGCAATTGGATGTGGTGCCTAAAGATGAAAATAAGTGCTTCCTTACCTATGTTATTCCTCATGAAAGGGAAAAGATGTTGACGGTAATATCTACAATAACTCAAGGATTTAACTTATAATACACTTCACGATGTTTAGCTTCTCACATTCCAATATTGGCTTTTACATCTATCAGGAATTCTTTGCTGAGCTTCAAGCTAGACAAAGTGAGTTCGGTGTAAAAGACATCCAGCTAGGTCTTACTACTCTTGAAGAAGTTTTCATGAACATAGCTAAACAGGCAGATGTGGAAACTGCAATAGCTG</genome_strand>
        <mrna_strand>TTTTCGATAATCCTGTGCGTTGAATCACCAAGGTGTCAGCCAAGATGAGATCTTGTAGTTACAGTGGAGGAATGAAACGACGTCTTAGTGTTGCTATAGCCCTTATTGGAGATCCAAAGTTGGTTATTTTGGATGAACCG.............................................................................................ACTACTGGTATGGATCCAATTACTCGAAGGCACGTTTGGGACATTATCGAGAAAGCCAAAAAAGGACGTGCCATTATCTTGACAACCCATTCAATGGAAGAAGCTGATGTCTTAAGTGATCGTATTGGTATCATGGCAAAGGGAAGGCTTCGTTGCATTGGAACTTCCATAAGGTTGAAAGCAAAATTTGGTACTGGTTTCATTGCTAATGTGGGCTTAGTTAGTGAATCAACATCTCCTGATGCTGTGAAACACTTCTTCAAAAGT.............................................................................................CAATTGGATGTGGTGCCTAAAGATGAAAATAAGTGCTTCCTTACCTATGTTATTCCTCATGAAAGGGAAAAGATGTTGACG............................................................................................GAATTCTTTGCTGAGCTTCAAGCTAGACAAAGTGAGTTCGGTGTAAAAGACATCCAGCTAGGTCTTACTACTCTTGAAGAAGTTTTCATGAACATAGCTAAACAGGCAGATGTGGAAACTGCAATAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364444" ref_strand="+" ref_description="SGN-E364444 [cLPP-20-N12]">
      <seq>ttaagtgatcgtattggtatcatggcaaagggaaggcttcgttgcattggaacttccataaggttgaaagcaaaatttggtactggtttcattgctaatgtgggcttagttagtgaatcaacatctcctgatgctgtgaaacacttcttcaaaagtcaattggatgtggtgcctaaagatgaaaataagtgcttccttacctatgttattcctcatgaaagggaaaagatgttgacggaattctttgctgagcttcaagctagacaaagtgagttcggtgtaaaagacatccagctaggtcttactactcttgaagaagttttcatgaacatagctaaacaggcagatgtggaaactgcaatagctgaaggaagatttaaaactcttacattgaactcangggactctgttgaagtacctgtaggagcgcaattcattggaattccaggaacaaaatctccacagaatcccggaggtgttatggtggaagtatattgggagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87365" stop="88739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87665" g_stop="87820" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87821" i_stop="87913" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87914" g_stop="87994" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="237" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87995" i_stop="88086" i_length="92">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88087" g_stop="88263" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="414" r_length="177" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88264" i_stop="88350" i_length="87">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88351" g_stop="88439" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="503" r_length="89" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E364444" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87665" e_stop="87820"/>
          <exon e_start="87914" e_stop="87994"/>
          <exon e_start="88087" e_stop="88263"/>
          <exon e_start="88351" e_stop="88439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGTGATCGTATTGGTATCATGGCAAAGGGAAGGCTTCGTTGCATTGGAACTTCCATAAGGTTGAAAGCAAAATTTGGTACTGGTTTCATTGCTAATGTGGGCTTAGTTAGTGAATCAACATCTCCTGATGCTGTGAAACACTTCTTCAAAAGTGTATGTCAAAAGCTACTTCCTCTTACCTTTTGTTTTCTTTTCAATCTTCTCTCTTAAGTACTGTTTAAAGCTAACATATAACTCTGTTGACAGCAATTGGATGTGGTGCCTAAAGATGAAAATAAGTGCTTCCTTACCTATGTTATTCCTCATGAAAGGGAAAAGATGTTGACGGTAATATCTACAATAACTCAAGGATTTAACTTATAATACACTTCACGATGTTTAGCTTCTCACATTCCAATATTGGCTTTTACATCTATCAGGAATTCTTTGCTGAGCTTCAAGCTAGACAAAGTGAGTTCGGTGTAAAAGACATCCAGCTAGGTCTTACTACTCTTGAAGAAGTTTTCATGAACATAGCTAAACAGGCAGATGTGGAAACTGCAATAGCTGAAGGAAGATTTAAAACTCTTACATTGAACTCAGGGGACTCTGTTGAAGTAAGTCAATCTTTGTTTACATAATAAGTACTAGTCTAGTACAAGATTAACTTCAGTCTATTAATACATAACTATATATGTCAATAGGTACCTGTGGGAGCACAATTCATTGGAATTCCAGGAACAAAATCTCCACAGAATCCCGGAGGTGTTATGGTGGAAGTATATTGGGAGCC</genome_strand>
        <mrna_strand>TTAAGTGATCGTATTGGTATCATGGCAAAGGGAAGGCTTCGTTGCATTGGAACTTCCATAAGGTTGAAAGCAAAATTTGGTACTGGTTTCATTGCTAATGTGGGCTTAGTTAGTGAATCAACATCTCCTGATGCTGTGAAACACTTCTTCAAAAGT.............................................................................................CAATTGGATGTGGTGCCTAAAGATGAAAATAAGTGCTTCCTTACCTATGTTATTCCTCATGAAAGGGAAAAGATGTTGACG............................................................................................GAATTCTTTGCTGAGCTTCAAGCTAGACAAAGTGAGTTCGGTGTAAAAGACATCCAGCTAGGTCTTACTACTCTTGAAGAAGTTTTCATGAACATAGCTAAACAGGCAGATGTGGAAACTGCAATAGCTGAAGGAAGATTTAAAACTCTTACATTGAACTCANGGGACTCTGTTGAA.......................................................................................GTACCTGTAGGAGCGCAATTCATTGGAATTCCAGGAACAAAATCTCCACAGAATCCCGGAGGTGTTATGGTGGAAGTATATTGGGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364424" ref_strand="+" ref_description="SGN-E364424 [cLPP-20-D10]">
      <seq>gttagtgaatcaacatctcctgatgctgtgaaacacttcttcaaaagtcaattggatgtggtgcctaaagatgaaaataagtgcttccttacctatgttattcctcatgaaagggaaaagatgttgacggaattctttgctgagcttcaagctagacaaagtgagttcggtgtaaaagacatccagctaggtcttactactcttgaagaagttttcatgaacatagctaaacaggcagatgtggaaactgcaatagctgaaggaagatttaaaactcttacattgaactcaagggactctgttgaagtacctgttggagcgcaattcattggaattccaagaacaaaatctccacagaatcccggaggtgttatggtggaagtatattgggagccagatgaaacaggtagtccttgcatatatggcatcttagaagaaatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87473" stop="88787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87773" g_stop="87820" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87821" i_stop="87913" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87914" g_stop="87994" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="129" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87995" i_stop="88086" i_length="92">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88087" g_stop="88263" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="306" r_length="177" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88264" i_stop="88350" i_length="87">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88351" g_stop="88487" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="443" r_length="137" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E364424" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87773" e_stop="87820"/>
          <exon e_start="87914" e_stop="87994"/>
          <exon e_start="88087" e_stop="88263"/>
          <exon e_start="88351" e_stop="88487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGTGAATCAACATCTCCTGATGCTGTGAAACACTTCTTCAAAAGTGTATGTCAAAAGCTACTTCCTCTTACCTTTTGTTTTCTTTTCAATCTTCTCTCTTAAGTACTGTTTAAAGCTAACATATAACTCTGTTGACAGCAATTGGATGTGGTGCCTAAAGATGAAAATAAGTGCTTCCTTACCTATGTTATTCCTCATGAAAGGGAAAAGATGTTGACGGTAATATCTACAATAACTCAAGGATTTAACTTATAATACACTTCACGATGTTTAGCTTCTCACATTCCAATATTGGCTTTTACATCTATCAGGAATTCTTTGCTGAGCTTCAAGCTAGACAAAGTGAGTTCGGTGTAAAAGACATCCAGCTAGGTCTTACTACTCTTGAAGAAGTTTTCATGAACATAGCTAAACAGGCAGATGTGGAAACTGCAATAGCTGAAGGAAGATTTAAAACTCTTACATTGAACTCAGGGGACTCTGTTGAAGTAAGTCAATCTTTGTTTACATAATAAGTACTAGTCTAGTACAAGATTAACTTCAGTCTATTAATACATAACTATATATGTCAATAGGTACCTGTGGGAGCACAATTCATTGGAATTCCAGGAACAAAATCTCCACAGAATCCCGGAGGTGTTATGGTGGAAGTATATTGGGAGCCAGATGAAACAGGTAGTCCTTGCATATATGGCATCTCAGAAGAAATGCC</genome_strand>
        <mrna_strand>GTTAGTGAATCAACATCTCCTGATGCTGTGAAACACTTCTTCAAAAGT.............................................................................................CAATTGGATGTGGTGCCTAAAGATGAAAATAAGTGCTTCCTTACCTATGTTATTCCTCATGAAAGGGAAAAGATGTTGACG............................................................................................GAATTCTTTGCTGAGCTTCAAGCTAGACAAAGTGAGTTCGGTGTAAAAGACATCCAGCTAGGTCTTACTACTCTTGAAGAAGTTTTCATGAACATAGCTAAACAGGCAGATGTGGAAACTGCAATAGCTGAAGGAAGATTTAAAACTCTTACATTGAACTCAAGGGACTCTGTTGAA.......................................................................................GTACCTGTTGGAGCGCAATTCATTGGAATTCCAAGAACAAAATCTCCACAGAATCCCGGAGGTGTTATGGTGGAAGTATATTGGGAGCCAGATGAAACAGGTAGTCCTTGCATATATGGCATCTTAGAAGAAATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547446" ref_strand="+" ref_description="SGN-E547446 [TUS-71-F8](-)">
      <seq>agaagttttcatgaacattgctaaacaggcagatgtggaagctgcaattgctgaagcaggatttaaacctcttacattgtcctcaggcgtctttgtcgaagttccggtcggagcgcaattcattggaattccaggaacaaaatctcctcagaatcccggaggtgttatggtggaagtatatttggatccagctgaaacaggtagtccttgcatatatggcatctcagaagaaatgccaataccacctcatattcaactaagagatcctccaacaaacaactcacctacaaaccaaggaattgtaattgacccttcacaactcaaaatgcacttgtcatgacaatattattaggaaatatagggacagaggtatgtaaactcagatacagtaagagatcgtaaggtgaatagtagtcttatactatcagtctgagtttaccataagccactagcgcttcaaagggtgaaattctagggtattagttaatttgatgaaacattttcaataggagctttgtagtccttttgatcgggttcaaaagttttgcatattgcgaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0181G10-8SCIm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0181G10.1" temp_strand="+" temp_description="C06HBa0181G10.1  AC219215.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0181G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87864" stop="89110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88164" g_stop="88263" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88264" i_stop="88350" i_length="87">
            <donor d_prob="0.986" d_score="0.82"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88351" g_stop="88804" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="554" r_length="454" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="557" polyA_stop="579"/>
      <MATCH_line gen_id="C06HBa0181G10.1" gen_strand="+" ref_id="SGN-E547446" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0181G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88164" e_stop="88263"/>
          <exon e_start="88351" e_stop="88804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTTTTCATGAACATAGCTAAACAGGCAGATGTGGAAACTGCAATAGCTGAAGGAAGATTTAAAACTCTTACATTGAACTCAGGGGACTCTGTTGAAGTAAGTCAATCTTTGTTTACATAATAAGTACTAGTCTAGTACAAGATTAACTTCAGTCTATTAATACATAACTATATATGTCAATAGGTACCTGTGGGAGCACAATTCATTGGAATTCCAGGAACAAAATCTCCACAGAATCCCGGAGGTGTTATGGTGGAAGTATATTGGGAGCCAGATGAAACAGGTAGTCCTTGCATATATGGCATCTCAGAAGAAATGCCAATACCACCTCATATTCAACTAAGAGATCCTCCAACAAACAACTCACCTACAAACCAAGGAATTGTAATCGACCCTTCACAACTCAAAATGCACTTGTCATGACAATATTATTAGGAAATATAGGGACAGAGGTATGTAAACTCAGATACAGTAAGAGATCGTAAGGTGAATAGTAGTCTGATACTATCAGTCTGAGTTTACCATAAGCCACTAGCGCTTCAAAAGGTGAAATTCTAGGGTATTAGTTAATTTGATGAAACATTTTCAATAGGAGCTTTTTAGTCCTTTTGATCGGATTCAAAAGCTTTGCATATTG</genome_strand>
        <mrna_strand>AGAAGTTTTCATGAACATTGCTAAACAGGCAGATGTGGAAGCTGCAATTGCTGAAGCAGGATTTAAACCTCTTACATTGTCCTCAGGCGTCTTTGTCGAA.......................................................................................GTTCCGGTCGGAGCGCAATTCATTGGAATTCCAGGAACAAAATCTCCTCAGAATCCCGGAGGTGTTATGGTGGAAGTATATTTGGATCCAGCTGAAACAGGTAGTCCTTGCATATATGGCATCTCAGAAGAAATGCCAATACCACCTCATATTCAACTAAGAGATCCTCCAACAAACAACTCACCTACAAACCAAGGAATTGTAATTGACCCTTCACAACTCAAAATGCACTTGTCATGACAATATTATTAGGAAATATAGGGACAGAGGTATGTAAACTCAGATACAGTAAGAGATCGTAAGGTGAATAGTAGTCTTATACTATCAGTCTGAGTTTACCATAAGCCACTAGCGCTTCAAAGGGTGAAATTCTAGGGTATTAGTTAATTTGATGAAACATTTTCAATAGGAGCTTTGTAGTCCTTTTGATCGGGTTCAAAAGTTTTGCATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>83</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="3579" PGL_stop="5351"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3579" e_stop="3706"/>
            <exon e_start="3875" e_stop="3954"/>
            <exon e_start="4869" e_stop="4978"/>
            <exon e_start="5083" e_stop="5351"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3579" e_stop="3706" e_length="128"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="3707" i_stop="3874" i_length="168"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3875" e_stop="3954" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.985">
            <gDNA_intron_boundary i_start="3955" i_stop="4868" i_length="914"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4869" e_stop="4978" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4979" i_stop="5082" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="5083" e_stop="5351" e_length="269"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3579" stop="3706"/>
              <exon start="3875" stop="3954"/>
              <exon start="4869" stop="4978"/>
              <exon start="5083" stop="5298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3580" stop="3706"/>
              <exon start="3875" stop="3954"/>
              <exon start="4869" stop="4978"/>
              <exon start="5083" stop="5298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3581" stop="3706"/>
              <exon start="3875" stop="3954"/>
              <exon start="4869" stop="4978"/>
              <exon start="5083" stop="5305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3581" stop="3706"/>
              <exon start="3875" stop="3954"/>
              <exon start="4869" stop="4978"/>
              <exon start="5083" stop="5298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3581" stop="3706"/>
              <exon start="3875" stop="3954"/>
              <exon start="4869" stop="4978"/>
              <exon start="5083" stop="5298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3581" stop="3706"/>
              <exon start="3875" stop="3954"/>
              <exon start="4869" stop="4978"/>
              <exon start="5083" stop="5298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3581" stop="3706"/>
              <exon start="3875" stop="3954"/>
              <exon start="4869" stop="4978"/>
              <exon start="5083" stop="5298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3581" stop="3706"/>
              <exon start="3875" stop="3954"/>
              <exon start="4869" stop="4978"/>
              <exon start="5083" stop="5282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3582" stop="3706"/>
              <exon start="3875" stop="3954"/>
              <exon start="4869" stop="4978"/>
              <exon start="5083" stop="5351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3582" stop="3706"/>
              <exon start="3875" stop="3954"/>
              <exon start="4869" stop="4978"/>
              <exon start="5083" stop="5298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3582" stop="3706"/>
              <exon start="3875" stop="3954"/>
              <exon start="4869" stop="4978"/>
              <exon start="5083" stop="5246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3582" stop="3706"/>
              <exon start="3875" stop="3954"/>
              <exon start="4869" stop="4978"/>
              <exon start="5083" stop="5204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3583" stop="3706"/>
              <exon start="3875" stop="3954"/>
              <exon start="4869" stop="4978"/>
              <exon start="5083" stop="5297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3583" stop="3706"/>
              <exon start="3875" stop="3954"/>
              <exon start="4869" stop="4978"/>
              <exon start="5083" stop="5244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3585" stop="3706"/>
              <exon start="3875" stop="3954"/>
              <exon start="4869" stop="4978"/>
              <exon start="5083" stop="5298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3588" stop="3706"/>
              <exon start="3875" stop="3954"/>
              <exon start="4869" stop="4978"/>
              <exon start="5083" stop="5298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3589" stop="3706"/>
              <exon start="3875" stop="3954"/>
              <exon start="4869" stop="4978"/>
              <exon start="5083" stop="5320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3593" stop="3706"/>
              <exon start="3875" stop="3954"/>
              <exon start="4869" stop="4978"/>
              <exon start="5083" stop="5285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3593" stop="3706"/>
              <exon start="3875" stop="3954"/>
              <exon start="4869" stop="4978"/>
              <exon start="5083" stop="5281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3593" stop="3706"/>
              <exon start="3875" stop="3954"/>
              <exon start="4869" stop="4978"/>
              <exon start="5083" stop="5276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3594" stop="3706"/>
              <exon start="3875" stop="3954"/>
              <exon start="4869" stop="4978"/>
              <exon start="5083" stop="5285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3605" stop="3706"/>
              <exon start="3875" stop="3954"/>
              <exon start="4869" stop="4978"/>
              <exon start="5083" stop="5313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3611" stop="3706"/>
              <exon start="3875" stop="3954"/>
              <exon start="4869" stop="4978"/>
              <exon start="5083" stop="5305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3615" stop="3706"/>
              <exon start="3875" stop="3954"/>
              <exon start="4869" stop="4978"/>
              <exon start="5083" stop="5298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3674" stop="3706"/>
              <exon start="3875" stop="3954"/>
              <exon start="4869" stop="4978"/>
              <exon start="5083" stop="5293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3893" stop="3954"/>
              <exon start="4869" stop="4978"/>
              <exon start="5083" stop="5298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4890" stop="4978"/>
              <exon start="5083" stop="5293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5090" stop="5298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5120" stop="5298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219521" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCCTCAACCTAGAGAGAGAGTGAGAGAGTGTAAGAGAGAGGTTCAAAGATGGTGCAGAGACTCACTTACCGTAAGCGCCACAGCTATGCCACCAAATCCAACCAACACCGCGTCGTCAAAACTCCTG : GTGGGAAGTTGATTTATCAGACTACCAAGAAGAGGGCTAATGGTCCCAAGTGCCCTGTCACTGGAAAGAGGATTCAGGGG : ATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAG : GATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTTATTTTGACTCCATTGCCATTCTATATTTTGTTTAGTCTTAATTTACCTTATAT</gDNA_template>
            <first_frame> S  L  N  L  E  R  E  *  E  S  V  R  E  R  F  K  D  G  A  E  T  H  L  P  *  A  P  Q  L  C  H  Q  I  Q  P  T  P  R  R  Q  N  S  W :   W  E  V  D  L  S  D  Y  Q  E  E  G  *  W  S  Q  V  P  C  H  W  K  E  D  S  G   : D  S  S  P  E  T  S  *  V  Q  E  V  Q  V  V  *  E  Q  E  D  C  E  P  C  L  W  R  S  I  V  W  R  S  S  *  G  E  :  D  R  P  C  F  L  G  G  R  A  K  N  C  *  E  G  F  E  D  P  K  S  Q  R  K  V  G  S  *  E  L  S  R  E  F  R  G  T  F  F  L  C  F  A  E  I  L  T  F  K  C  L  L  V  L  C  Y  K  L  T  L  L  L  Q  Q  F  T  A  V  F  C  F  I  L  T  P  L  P  F  Y  I  L  F  S  L  N  L  P  Y   </first_frame>
            <second_frame>  A  S  T  *  R  E  S  E  R  V  *  E  R  G  S  K  M  V  Q  R  L  T  Y  R  K  R  H  S  Y  A  T  K  S  N  Q  H  R  V  V  K  T  P   : G  G  K  L  I  Y  Q  T  T  K  K  R  A  N  G  P  K  C  P  V  T  G  K  R  I  Q  G  :  I  P  H  L  R  P  A  E  Y  K  R  S  R  L  S  R  N  R  R  T  V  N  R  A  Y  G  G  V  L  S  G  G  A  V  R  E  R :   I  V  R  A  F  L  V  E  E  Q  K  I  V  K  K  V  L  K  I  Q  K  A  K  E  K  L  A  A  K  S  *  A  E  S  L  E  E  L  S  F  Y  V  L  L  K  F  *  H  S  S  V  Y  *  F  C  A  T  N  *  P  Y  C  Y  N  N  L  R  Q  F  F  A  L  F  *  L  H  C  H  S  I  F  C  L  V  L  I  Y  L  I  </second_frame>
            <third_frame>   P  Q  P  R  E  R  V  R  E  C  K  R  E  V  Q  R  W  C  R  D  S  L  T  V  S  A  T  A  M  P  P  N  P  T  N  T  A  S  S  K  L  L  :  V  G  S  *  F  I  R  L  P  R  R  G  L  M  V  P  S  A  L  S  L  E  R  G  F  R  G :   F  L  T  *  D  Q  L  S  T  R  G  P  G  C  L  G  T  G  G  L  *  T  V  P  M  A  E  Y  C  L  E  E  Q  L  G  R   : G  S  S  V  L  S  W  W  K  S  K  K  L  L  R  R  F  *  R  S  K  K  P  K  K  S  W  Q  L  R  V  K  Q  R  V  *  R  N  F  L  F  M  F  C  *  N  F  D  I  Q  V  F  T  S  F  V  L  Q  I  D  L  I  A  T  T  I  Y  G  S  F  L  L  Y  F  D  S  I  A  I  L  Y  F  V  *  S  *  F  T  L  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0181G10.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3613" stop="3706"/>
                    <exon start="3875" stop="3954"/>
                    <exon start="4869" stop="4978"/>
                    <exon start="5083" stop="5176"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERGSKMVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRANGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIVRAFLVEEQKIVKKVLKIQKAKEKLAAKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="4917" e_stop="5298"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="4917" e_stop="5298" e_length="382"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4917" stop="5298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4964" stop="5291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4978" stop="5298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5090" stop="5298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5120" stop="5298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219521" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAGGTTTGTTCTCTTAAATGCTTGTTGGCTTGTCCATGTCTGTCATATGTCACCTTCATTGCCTTCTGTATCGAACTTTTAATAATCGAGTTATGCTTGGTTTGCAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTT</gDNA_template>
            <first_frame> N  R  R  T  V  N  R  A  Y  G  G  V  L  S  G  G  A  V  R  E  R  F  V  L  L  N  A  C  W  L  V  H  V  C  H  M  S  P  S  L  P  S  V  S  N  F  *  *  S  S  Y  A  W  F  A  G  S  S  V  L  S  W  W  K  S  K  K  L  L  R  R  F  *  R  S  K  K  P  K  K  S  W  Q  L  R  V  K  Q  R  V  *  R  N  F  L  F  M  F  C  *  N  F  D  I  Q  V  F  T  S  F  V  L  Q  I  D  L  I  A  T  T  I  Y  G  S  F  L  L  </first_frame>
            <second_frame>  T  G  G  L  *  T  V  P  M  A  E  Y  C  L  E  E  Q  L  G  R  G  L  F  S  *  M  L  V  G  L  S  M  S  V  I  C  H  L  H  C  L  L  Y  R  T  F  N  N  R  V  M  L  G  L  Q  D  R  P  C  F  L  G  G  R  A  K  N  C  *  E  G  F  E  D  P  K  S  Q  R  K  V  G  S  *  E  L  S  R  E  F  R  G  T  F  F  L  C  F  A  E  I  L  T  F  K  C  L  L  V  L  C  Y  K  L  T  L  L  L  Q  Q  F  T  A  V  F  C  F </second_frame>
            <third_frame>   Q  E  D  C  E  P  C  L  W  R  S  I  V  W  R  S  S  *  G  E  V  C  S  L  K  C  L  L  A  C  P  C  L  S  Y  V  T  F  I  A  F  C  I  E  L  L  I  I  E  L  C  L  V  C  R  I  V  R  A  F  L  V  E  E  Q  K  I  V  K  K  V  L  K  I  Q  K  A  K  E  K  L  A  A  K  S  *  A  E  S  L  E  E  L  S  F  Y  V  L  L  K  F  *  H  S  S  V  Y  *  F  C  A  T  N  *  P  Y  C  Y  N  N  L  R  Q  F  F  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0181G10.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4973" stop="5176"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GEVCSLKCLLACPCLSYVTFIAFCIELLIIELCLVCRIVRAFLVEEQKIVKKVLKIQKAKEKLAAKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="4655" e_stop="4661"/>
            <exon e_start="4869" e_stop="4978"/>
            <exon e_start="5083" e_stop="5304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.278" acc_prob="0.985" e_score="0.714"/>
          <exon-intron don_prob="0.962" acc_prob="0.999" e_score="0.991"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.714">
            <gDNA_exon_boundary e_start="4655" e_stop="4661" e_length="7"/>
          </exon>
          <intron i_serial="1" don_prob="0.278" acc_prob="0.985">
            <gDNA_intron_boundary i_start="4662" i_stop="4868" i_length="207"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="4869" e_stop="4978" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.962" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4979" i_stop="5082" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5083" e_stop="5304" e_length="222"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4655" stop="4661"/>
              <exon start="4869" stop="4978"/>
              <exon start="5083" stop="5304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4890" stop="4978"/>
              <exon start="5083" stop="5293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5090" stop="5298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5120" stop="5298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219521" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGCAGG : ATTCCTCACCTGAGACCAGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACAGGAGGACTGTGAACCGTGCCTATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAG : GATCGTCCGTGCTTTCTTGGTGGAAGAGCAAAAAATTGTTAAGAAGGTTTTGAAGATCCAAAAAGCCAAAGAAAAGTTGGCAGCTAAGAGTTAAGCAGAGAGTTTAGAGGAACTTTCTTTTTATGTTTTGCTGAAATTTTGACATTCAAGTGTTTACTAGTTTTGTGCTACAAATTGACCTTATTGCTACAACAATTTACGGCAGTTTTTTGCTTTATTTTG</gDNA_template>
            <first_frame> Q  Q   : D  S  S  P  E  T  S  *  V  Q  E  V  Q  V  V  *  E  Q  E  D  C  E  P  C  L  W  R  S  I  V  W  R  S  S  *  G  E  :  D  R  P  C  F  L  G  G  R  A  K  N  C  *  E  G  F  E  D  P  K  S  Q  R  K  V  G  S  *  E  L  S  R  E  F  R  G  T  F  F  L  C  F  A  E  I  L  T  F  K  C  L  L  V  L  C  Y  K  L  T  L  L  L  Q  Q  F  T  A  V  F  C  F  I  L </first_frame>
            <second_frame>  S  R  :  I  P  H  L  R  P  A  E  Y  K  R  S  R  L  S  R  N  R  R  T  V  N  R  A  Y  G  G  V  L  S  G  G  A  V  R  E  R :   I  V  R  A  F  L  V  E  E  Q  K  I  V  K  K  V  L  K  I  Q  K  A  K  E  K  L  A  A  K  S  *  A  E  S  L  E  E  L  S  F  Y  V  L  L  K  F  *  H  S  S  V  Y  *  F  C  A  T  N  *  P  Y  C  Y  N  N  L  R  Q  F  F  A  L  F   </second_frame>
            <third_frame>   A  G :   F  L  T  *  D  Q  L  S  T  R  G  P  G  C  L  G  T  G  G  L  *  T  V  P  M  A  E  Y  C  L  E  E  Q  L  G  R   : G  S  S  V  L  S  W  W  K  S  K  K  L  L  R  R  F  *  R  S  K  K  P  K  K  S  W  Q  L  R  V  K  Q  R  V  *  R  N  F  L  F  M  F  C  *  N  F  D  I  Q  V  F  T  S  F  V  L  Q  I  D  L  I  A  T  T  I  Y  G  S  F  L  L  Y  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0181G10.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4656" stop="4661"/>
                    <exon start="4869" stop="4978"/>
                    <exon start="5083" stop="5176"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIVRAFLVEEQKIVKKVLKIQKAKEKLAAKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="6701" PGL_stop="7938"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6701" e_stop="6725"/>
            <exon e_start="6978" e_stop="7635"/>
            <exon e_start="7845" e_stop="7938"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.996" e_score="0.997"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6701" e_stop="6725" e_length="25"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.989">
            <gDNA_intron_boundary i_start="6726" i_stop="6977" i_length="252"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="6978" e_stop="7635" e_length="658"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.996">
            <gDNA_intron_boundary i_start="7636" i_stop="7844" i_length="209"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="7845" e_stop="7938" e_length="94"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6701" stop="6725"/>
              <exon start="6978" stop="7635"/>
              <exon start="7845" stop="7938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335258" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACATTGCTGCTTCTCTGATATCCA : GTTGATCATGGCAACAAAAGGAAATCCAGGGGATAACAGAAATAAAAGCTTTTTACCATCATTACTTGTCATAGCTGCACTTTGTTGTTTCTTCTATGTTCTTGGAGTGTGGAAAAGAAGTGGTTTTGGGAAGGGAGACAGCATAGCACTTGAAATAACAAAGAAGGCAGAGGACTGCGGTATCCTTCCTAATTTGGAGTATGAAACTCACCATGGGAATCAAAGCACCTCGTTCGATGATCCCAAGCAAGATGTCAAGGAGATTGAGCCATGTGGCGAGCAATACATTGATTATACACCATGTCATGATCAAATGCGAGCAATGACATTTCCTAGAGAAAATATGAACTATAGGGAGAGACATTGTCCTCCAGATGAAGAGAAGCTGCATTGTCTTGTTCCAGCTCCAAAAGGATATGTCACTCCTTTTTCATGGCCAAAGAGTCGTGACTATGTACCTTTTGCAAATGCACCACATAAGAGCTTAACAGTCGAGAAGGCAGTGCAAAATTGGGTTCAATATGAAGGAGATGTATTTAGATTTCCAGGTGGTGGAACACAGTTCCCCAATGGGGCAGATGCATATATTGATCAACTTGCTTCTGTTATACCGATGGAAAATGGTACTGTAAGAACTGCATTGGATACCGGATGTGGG : GTTGCAAGTTGGGGTGCATACCTTTTCAAGAAGAATGTTCTAACCATGTCCTTCGCACCCAGAGACTCGCATGAAGCTCAAGTTCAATTTGCTT</gDNA_template>
            <first_frame> N  I  A  A  S  L  I  S   : S  *  S  W  Q  Q  K  E  I  Q  G  I  T  E  I  K  A  F  Y  H  H  Y  L  S  *  L  H  F  V  V  S  S  M  F  L  E  C  G  K  E  V  V  L  G  R  E  T  A  *  H  L  K  *  Q  R  R  Q  R  T  A  V  S  F  L  I  W  S  M  K  L  T  M  G  I  K  A  P  R  S  M  I  P  S  K  M  S  R  R  L  S  H  V  A  S  N  T  L  I  I  H  H  V  M  I  K  C  E  Q  *  H  F  L  E  K  I  *  T  I  G  R  D  I  V  L  Q  M  K  R  S  C  I  V  L  F  Q  L  Q  K  D  M  S  L  L  F  H  G  Q  R  V  V  T  M  Y  L  L  Q  M  H  H  I  R  A  *  Q  S  R  R  Q  C  K  I  G  F  N  M  K  E  M  Y  L  D  F  Q  V  V  E  H  S  S  P  M  G  Q  M  H  I  L  I  N  L  L  L  L  Y  R  W  K  M  V  L  *  E  L  H  W  I  P  D  V  G :   L  Q  V  G  V  H  T  F  S  R  R  M  F  *  P  C  P  S  H  P  E  T  R  M  K  L  K  F  N  L  L </first_frame>
            <second_frame>  T  L  L  L  L  *  Y  P  :  V  D  H  G  N  K  R  K  S  R  G  *  Q  K  *  K  L  F  T  I  I  T  C  H  S  C  T  L  L  F  L  L  C  S  W  S  V  E  K  K  W  F  W  E  G  R  Q  H  S  T  *  N  N  K  E  G  R  G  L  R  Y  P  S  *  F  G  V  *  N  S  P  W  E  S  K  H  L  V  R  *  S  Q  A  R  C  Q  G  D  *  A  M  W  R  A  I  H  *  L  Y  T  M  S  *  S  N  A  S  N  D  I  S  *  R  K  Y  E  L  *  G  E  T  L  S  S  R  *  R  E  A  A  L  S  C  S  S  S  K  R  I  C  H  S  F  F  M  A  K  E  S  *  L  C  T  F  C  K  C  T  T  *  E  L  N  S  R  E  G  S  A  K  L  G  S  I  *  R  R  C  I  *  I  S  R  W  W  N  T  V  P  Q  W  G  R  C  I  Y  *  S  T  C  F  C  Y  T  D  G  K  W  Y  C  K  N  C  I  G  Y  R  M  W   : G  C  K  L  G  C  I  P  F  Q  E  E  C  S  N  H  V  L  R  T  Q  R  L  A  *  S  S  S  S  I  C   </second_frame>
            <third_frame>   H  C  C  F  S  D  I  Q :   L  I  M  A  T  K  G  N  P  G  D  N  R  N  K  S  F  L  P  S  L  L  V  I  A  A  L  C  C  F  F  Y  V  L  G  V  W  K  R  S  G  F  G  K  G  D  S  I  A  L  E  I  T  K  K  A  E  D  C  G  I  L  P  N  L  E  Y  E  T  H  H  G  N  Q  S  T  S  F  D  D  P  K  Q  D  V  K  E  I  E  P  C  G  E  Q  Y  I  D  Y  T  P  C  H  D  Q  M  R  A  M  T  F  P  R  E  N  M  N  Y  R  E  R  H  C  P  P  D  E  E  K  L  H  C  L  V  P  A  P  K  G  Y  V  T  P  F  S  W  P  K  S  R  D  Y  V  P  F  A  N  A  P  H  K  S  L  T  V  E  K  A  V  Q  N  W  V  Q  Y  E  G  D  V  F  R  F  P  G  G  G  T  Q  F  P  N  G  A  D  A  Y  I  D  Q  L  A  S  V  I  P  M  E  N  G  T  V  R  T  A  L  D  T  G  C  G  :  V  A  S  W  G  A  Y  L  F  K  K  N  V  L  T  M  S  F  A  P  R  D  S  H  E  A  Q  V  Q  F  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0181G10.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6703" stop="6725"/>
                    <exon start="6978" stop="7635"/>
                    <exon start="7845" stop="7937"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>774</number_coding_nucleotides>
                  <number_encoded_amino_acids>258</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HCCFSDIQLIMATKGNPGDNRNKSFLPSLLVIAALCCFFYVLGVWKRSGFGKGDSIALEITKKAEDCGILPNLEYETHHGNQSTSFDDPKQDVKEIEPCGEQYIDYTPCHDQMRAMTFPRENMNYRERHCPPDEEKLHCLVPAPKGYVTPFSWPKSRDYVPFANAPHKSLTVEKAVQNWVQYEGDVFRFPGGGTQFPNGADAYIDQLASVIPMENGTVRTALDTGCGVASWGAYLFKKNVLTMSFAPRDSHEAQVQFA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="12235" PGL_stop="13058"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12235" e_stop="13058"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="12235" e_stop="13058" e_length="824"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12235" stop="13058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731201" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTATAGTTTTCACAAGTCTATAAACTCCTTCCTATTTTATAGGTTATGAGCTTTCTAATTATCTTTCGTCTCTTGTTTGTTGGTAAACTGTTTTTTTCTGAGTTTCGTTCTGTCCCTTCCTGTCTCAAAGGTTATCATATAACTCTTTTACACTAGTAAAGATATTAACCCATAAAGCTCCTCCCAGAAATCGTTGCTTCTGGATCAAACTCTCTTCAAAATTTTCATCAAACAACAGAAACCTGAAGCATTTCGTCTCCATGGAAGCCAATAATAATGTAACCAGCCTTCGCGTAGCATCATTTTCTTGTTACCTTAGCAACCCTGACGATCAGAGTTTTTTACATAAACTAGGAGGCTCTTATGAAGAGCCTTATTCTGCTGTTGTTTTACCACCTGAGAACCCCTTTTCTGTAAGAGCTACTAAGGCACCTACTAGTAAACCATCCTCGAATAACCCTCGAGACAGCCTTGCCAATCTTCGCGTTGAGTCTTTCTCTTCTTATCTCAAGACTGATGAAGACAACTTTGCATTTAAGACCTCAGGTGCTTCTCCTGTTCAAGATCCTACTATTGCATTTGTTTTTTCTCAGCAAACTTTGGTTAGCACTCAGAAACACCAAGAAAGAACCAAGTTGAAAGATGGGGAACTAAGCATATTTGGAGCTGACAAGTATTTCAACAAGAAACTGGAATATGGAGCTGCCGCTACATCTGTGGTGAAGTATGGCGGGCAGATGAACAACGGGATGGTGGATCTTCCCCACCCGAAACCAAGTTCCCAGACAGGAACTCCAAGCATCCATTCAGAAGCAAGCAGTTT</gDNA_template>
            <first_frame> S  I  V  F  T  S  L  *  T  P  S  Y  F  I  G  Y  E  L  S  N  Y  L  S  S  L  V  C  W  *  T  V  F  F  *  V  S  F  C  P  F  L  S  Q  R  L  S  Y  N  S  F  T  L  V  K  I  L  T  H  K  A  P  P  R  N  R  C  F  W  I  K  L  S  S  K  F  S  S  N  N  R  N  L  K  H  F  V  S  M  E  A  N  N  N  V  T  S  L  R  V  A  S  F  S  C  Y  L  S  N  P  D  D  Q  S  F  L  H  K  L  G  G  S  Y  E  E  P  Y  S  A  V  V  L  P  P  E  N  P  F  S  V  R  A  T  K  A  P  T  S  K  P  S  S  N  N  P  R  D  S  L  A  N  L  R  V  E  S  F  S  S  Y  L  K  T  D  E  D  N  F  A  F  K  T  S  G  A  S  P  V  Q  D  P  T  I  A  F  V  F  S  Q  Q  T  L  V  S  T  Q  K  H  Q  E  R  T  K  L  K  D  G  E  L  S  I  F  G  A  D  K  Y  F  N  K  K  L  E  Y  G  A  A  A  T  S  V  V  K  Y  G  G  Q  M  N  N  G  M  V  D  L  P  H  P  K  P  S  S  Q  T  G  T  P  S  I  H  S  E  A  S  S   </first_frame>
            <second_frame>  L  *  F  S  Q  V  Y  K  L  L  P  I  L  *  V  M  S  F  L  I  I  F  R  L  L  F  V  G  K  L  F  F  S  E  F  R  S  V  P  S  C  L  K  G  Y  H  I  T  L  L  H  *  *  R  Y  *  P  I  K  L  L  P  E  I  V  A  S  G  S  N  S  L  Q  N  F  H  Q  T  T  E  T  *  S  I  S  S  P  W  K  P  I  I  M  *  P  A  F  A  *  H  H  F  L  V  T  L  A  T  L  T  I  R  V  F  Y  I  N  *  E  A  L  M  K  S  L  I  L  L  L  F  Y  H  L  R  T  P  F  L  *  E  L  L  R  H  L  L  V  N  H  P  R  I  T  L  E  T  A  L  P  I  F  A  L  S  L  S  L  L  I  S  R  L  M  K  T  T  L  H  L  R  P  Q  V  L  L  L  F  K  I  L  L  L  H  L  F  F  L  S  K  L  W  L  A  L  R  N  T  K  K  E  P  S  *  K  M  G  N  *  A  Y  L  E  L  T  S  I  S  T  R  N  W  N  M  E  L  P  L  H  L  W  *  S  M  A  G  R  *  T  T  G  W  W  I  F  P  T  R  N  Q  V  P  R  Q  E  L  Q  A  S  I  Q  K  Q  A  V  </second_frame>
            <third_frame>   Y  S  F  H  K  S  I  N  S  F  L  F  Y  R  L  *  A  F  *  L  S  F  V  S  C  L  L  V  N  C  F  F  L  S  F  V  L  S  L  P  V  S  K  V  I  I  *  L  F  Y  T  S  K  D  I  N  P  *  S  S  S  Q  K  S  L  L  L  D  Q  T  L  F  K  I  F  I  K  Q  Q  K  P  E  A  F  R  L  H  G  S  Q  *  *  C  N  Q  P  S  R  S  I  I  F  L  L  P  *  Q  P  *  R  S  E  F  F  T  *  T  R  R  L  L  *  R  A  L  F  C  C  C  F  T  T  *  E  P  L  F  C  K  S  Y  *  G  T  Y  *  *  T  I  L  E  *  P  S  R  Q  P  C  Q  S  S  R  *  V  F  L  F  L  S  Q  D  *  *  R  Q  L  C  I  *  D  L  R  C  F  S  C  S  R  S  Y  Y  C  I  C  F  F  S  A  N  F  G  *  H  S  E  T  P  R  K  N  Q  V  E  R  W  G  T  K  H  I  W  S  *  Q  V  F  Q  Q  E  T  G  I  W  S  C  R  Y  I  C  G  E  V  W  R  A  D  E  Q  R  D  G  G  S  S  P  P  E  T  K  F  P  D  R  N  S  K  H  P  F  R  S  K  Q  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0181G10.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12337" stop="13056"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>720</number_coding_nucleotides>
                  <number_encoded_amino_acids>240</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSFCPFLSQRLSYNSFTLVKILTHKAPPRNRCFWIKLSSKFSSNNRNLKHFVSMEANNNVTSLRVASFSCYLSNPDDQSFLHKLGGSYEEPYSAVVLPPENPFSVRATKAPTSKPSSNNPRDSLANLRVESFSSYLKTDEDNFAFKTSGASPVQDPTIAFVFSQQTLVSTQKHQERTKLKDGELSIFGADKYFNKKLEYGAAATSVVKYGGQMNNGMVDLPHPKPSSQTGTPSIHSEASS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="17967" PGL_stop="23080"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17967" e_stop="18144"/>
            <exon e_start="19197" e_stop="19319"/>
            <exon e_start="19405" e_stop="19455"/>
            <exon e_start="19633" e_stop="19704"/>
            <exon e_start="19805" e_stop="19918"/>
            <exon e_start="20007" e_stop="20068"/>
            <exon e_start="20800" e_stop="20881"/>
            <exon e_start="21022" e_stop="21078"/>
            <exon e_start="21180" e_stop="21224"/>
            <exon e_start="22867" e_stop="23080"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.823" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.798" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.627" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17967" e_stop="18144" e_length="178"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="18145" i_stop="19196" i_length="1052"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19197" e_stop="19319" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.823" acc_prob="0.996">
            <gDNA_intron_boundary i_start="19320" i_stop="19404" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19405" e_stop="19455" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.877">
            <gDNA_intron_boundary i_start="19456" i_stop="19632" i_length="177"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19633" e_stop="19704" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.798" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19705" i_stop="19804" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19805" e_stop="19918" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="0.938" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19919" i_stop="20006" i_length="88"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20007" e_stop="20068" e_length="62"/>
          </exon>
          <intron i_serial="6" don_prob="0.970" acc_prob="0.995">
            <gDNA_intron_boundary i_start="20069" i_stop="20799" i_length="731"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="20800" e_stop="20881" e_length="82"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="20882" i_stop="21021" i_length="140"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="21022" e_stop="21078" e_length="57"/>
          </exon>
          <intron i_serial="8" don_prob="0.627" acc_prob="0.986">
            <gDNA_intron_boundary i_start="21079" i_stop="21179" i_length="101"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="21180" e_stop="21224" e_length="45"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="21225" i_stop="22866" i_length="1642"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="22867" e_stop="23080" e_length="214"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17967" stop="18144"/>
              <exon start="19197" stop="19319"/>
              <exon start="19405" stop="19455"/>
              <exon start="19633" stop="19704"/>
              <exon start="19805" stop="19918"/>
              <exon start="20007" stop="20068"/>
              <exon start="20800" stop="20881"/>
              <exon start="21022" stop="21078"/>
              <exon start="21180" stop="21224"/>
              <exon start="22867" stop="22967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17973" stop="18144"/>
              <exon start="19197" stop="19319"/>
              <exon start="19405" stop="19455"/>
              <exon start="19633" stop="19704"/>
              <exon start="19805" stop="19918"/>
              <exon start="20007" stop="20068"/>
              <exon start="20800" stop="20881"/>
              <exon start="21022" stop="21078"/>
              <exon start="21180" stop="21224"/>
              <exon start="22867" stop="23071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17973" stop="18144"/>
              <exon start="19197" stop="19319"/>
              <exon start="19405" stop="19455"/>
              <exon start="19633" stop="19704"/>
              <exon start="19805" stop="19918"/>
              <exon start="20007" stop="20068"/>
              <exon start="20800" stop="20881"/>
              <exon start="21022" stop="21078"/>
              <exon start="21180" stop="21224"/>
              <exon start="22867" stop="22967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17974" stop="18144"/>
              <exon start="19197" stop="19319"/>
              <exon start="19405" stop="19455"/>
              <exon start="19633" stop="19704"/>
              <exon start="19805" stop="19918"/>
              <exon start="20007" stop="20068"/>
              <exon start="20800" stop="20873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17974" stop="18144"/>
              <exon start="19197" stop="19319"/>
              <exon start="19405" stop="19455"/>
              <exon start="19633" stop="19704"/>
              <exon start="19805" stop="19918"/>
              <exon start="20007" stop="20061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17987" stop="18144"/>
              <exon start="19197" stop="19319"/>
              <exon start="19405" stop="19455"/>
              <exon start="19633" stop="19704"/>
              <exon start="19805" stop="19833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19260" stop="19319"/>
              <exon start="19405" stop="19455"/>
              <exon start="19633" stop="19704"/>
              <exon start="19805" stop="19918"/>
              <exon start="20007" stop="20068"/>
              <exon start="20800" stop="20881"/>
              <exon start="21022" stop="21078"/>
              <exon start="21180" stop="21224"/>
              <exon start="22867" stop="23080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20043" stop="20068"/>
              <exon start="20800" stop="20881"/>
              <exon start="21022" stop="21078"/>
              <exon start="21180" stop="21224"/>
              <exon start="22867" stop="23079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20808" stop="20881"/>
              <exon start="21022" stop="21078"/>
              <exon start="21180" stop="21224"/>
              <exon start="22867" stop="23071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20808" stop="20881"/>
              <exon start="21022" stop="21078"/>
              <exon start="21180" stop="21224"/>
              <exon start="22867" stop="23071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552925" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTAAGCGAAATCAAGAAAATCAGTTAAGCAGCTCTGTAACTCAGGTGGGAAAAAGGCAAAAAATAATGGTGGTTGACAAAGGGAAGAAGCAGAAAGTGGAAGAGGAAAGCTACATTGATGAAAAGCTCATTTTTTCCATTGAAAAATTGCAAGAAATACAAGACGACCTTGACAAG : ATCAATGAGAAAGCAAGTGAGGAAGTGTTGGAAATAGAACAGAAGTACAACAAGATCCGCAAGCCTGTTTATGATAAGCGGAATGATATCATTAACTCTATTTCTGACTTCTGGTTGACTGCT : TTTTTGAGTCATCCTGTTCTTGGTGACCTTCTAACTGAAGAGGACCAAAAG : ATTTTCAAATTCTTAAGTTCTATTGAAGTGGAAGACTCGAAAGATGTGAAATTTGGTTACTCAATCACGTTT : AACTTTAAGCCCAATCCTTTCTTTGAAAATTCAAAGCTCTCAAAGACCTATACCTTCCTTGAAGATGGACCTACAAAAATCACAGCTACACCAATAAAATGGAAAGAAGGCAAA : GGCATTCCTAATGGCGTTGCTCAGGAGAAGAAAGGAAACAAGCGATCCCATGCTGAAGAGAG : CTTCTTCACCTGGTTCAGTGAAGTCAATAAAAAAGATGATAGCGATGATGATGAAAATGAGGTTCTGGAGATTCAGGATGAG : GTTGCTGAAATAATCAAGGATGACTTGTGGCCAAACCCTTTAACTTATTTTACCAAT : GAACCTGATGAAGAAGATTTTGAGGGTGATGAAGGTGGTGATGAG : GGGGAGGACTCTGAAGATGAAGGTGATGAGGAGGAAGAGGAAGACGACGAAGATGAAGATGACAAATGAACTGTTAATGGACCTCATATTTGATTTGATTTCTCTTCTTCAATGTTTCAATTATCATAGTTGGTATCTGTAAAGAAGCTTAATATTGCAGATAAAATCGAATTATATATAGTGGTGACTGCTTTTTTACTACAAAATGAACTTT</gDNA_template>
            <first_frame> V  *  A  K  S  R  K  S  V  K  Q  L  C  N  S  G  G  K  K  A  K  N  N  G  G  *  Q  R  E  E  A  E  S  G  R  G  K  L  H  *  *  K  A  H  F  F  H  *  K  I  A  R  N  T  R  R  P  *  Q   : D  Q  *  E  S  K  *  G  S  V  G  N  R  T  E  V  Q  Q  D  P  Q  A  C  L  *  *  A  E  *  Y  H  *  L  Y  F  *  L  L  V  D  C   : F  F  E  S  S  C  S  W  *  P  S  N  *  R  G  P  K   : D  F  Q  I  L  K  F  Y  *  S  G  R  L  E  R  C  E  I  W  L  L  N  H  V   : *  L  *  A  Q  S  F  L  *  K  F  K  A  L  K  D  L  Y  L  P  *  R  W  T  Y  K  N  H  S  Y  T  N  K  M  E  R  R  Q   : R  H  S  *  W  R  C  S  G  E  E  R  K  Q  A  I  P  C  *  R  E  :  L  L  H  L  V  Q  *  S  Q  *  K  R  *  *  R  *  *  *  K  *  G  S  G  D  S  G  *   : G  C  *  N  N  Q  G  *  L  V  A  K  P  F  N  L  F  Y  Q   : *  T  *  *  R  R  F  *  G  *  *  R  W  *  *   : G  G  G  L  *  R  *  R  *  *  G  G  R  G  R  R  R  R  *  R  *  Q  M  N  C  *  W  T  S  Y  L  I  *  F  L  F  F  N  V  S  I  I  I  V  G  I  C  K  E  A  *  Y  C  R  *  N  R  I  I  Y  S  G  D  C  F  F  T  T  K  *  T   </first_frame>
            <second_frame>  F  K  R  N  Q  E  N  Q  L  S  S  S  V  T  Q  V  G  K  R  Q  K  I  M  V  V  D  K  G  K  K  Q  K  V  E  E  E  S  Y  I  D  E  K  L  I  F  S  I  E  K  L  Q  E  I  Q  D  D  L  D  K  :  I  N  E  K  A  S  E  E  V  L  E  I  E  Q  K  Y  N  K  I  R  K  P  V  Y  D  K  R  N  D  I  I  N  S  I  S  D  F  W  L  T  A  :  F  L  S  H  P  V  L  G  D  L  L  T  E  E  D  Q  K  :  I  F  K  F  L  S  S  I  E  V  E  D  S  K  D  V  K  F  G  Y  S  I  T  F  :  N  F  K  P  N  P  F  F  E  N  S  K  L  S  K  T  Y  T  F  L  E  D  G  P  T  K  I  T  A  T  P  I  K  W  K  E  G  K  :  G  I  P  N  G  V  A  Q  E  K  K  G  N  K  R  S  H  A  E  E  S :   F  F  T  W  F  S  E  V  N  K  K  D  D  S  D  D  D  E  N  E  V  L  E  I  Q  D  E  :  V  A  E  I  I  K  D  D  L  W  P  N  P  L  T  Y  F  T  N  :  E  P  D  E  E  D  F  E  G  D  E  G  G  D  E  :  G  E  D  S  E  D  E  G  D  E  E  E  E  E  D  D  E  D  E  D  D  K  *  T  V  N  G  P  H  I  *  F  D  F  S  S  S  M  F  Q  L  S  *  L  V  S  V  K  K  L  N  I  A  D  K  I  E  L  Y  I  V  V  T  A  F  L  L  Q  N  E  L  </second_frame>
            <third_frame>   L  S  E  I  K  K  I  S  *  A  A  L  *  L  R  W  E  K  G  K  K  *  W  W  L  T  K  G  R  S  R  K  W  K  R  K  A  T  L  M  K  S  S  F  F  P  L  K  N  C  K  K  Y  K  T  T  L  T  R :   S  M  R  K  Q  V  R  K  C  W  K  *  N  R  S  T  T  R  S  A  S  L  F  M  I  S  G  M  I  S  L  T  L  F  L  T  S  G  *  L  L :   F  *  V  I  L  F  L  V  T  F  *  L  K  R  T  K  R :   F  S  N  S  *  V  L  L  K  W  K  T  R  K  M  *  N  L  V  T  Q  S  R  L :   T  L  S  P  I  L  S  L  K  I  Q  S  S  Q  R  P  I  P  S  L  K  M  D  L  Q  K  S  Q  L  H  Q  *  N  G  K  K  A  K :   A  F  L  M  A  L  L  R  R  R  K  E  T  S  D  P  M  L  K  R   : A  S  S  P  G  S  V  K  S  I  K  K  M  I  A  M  M  M  K  M  R  F  W  R  F  R  M  R :   L  L  K  *  S  R  M  T  C  G  Q  T  L  *  L  I  L  P  M :   N  L  M  K  K  I  L  R  V  M  K  V  V  M  R :   G  R  T  L  K  M  K  V  M  R  R  K  R  K  T  T  K  M  K  M  T  N  E  L  L  M  D  L  I  F  D  L  I  S  L  L  Q  C  F  N  Y  H  S  W  Y  L  *  R  S  L  I  L  Q  I  K  S  N  Y  I  *  W  *  L  L  F  Y  Y  K  M  N  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0181G10.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17968" stop="18144"/>
                    <exon start="19197" stop="19319"/>
                    <exon start="19405" stop="19455"/>
                    <exon start="19633" stop="19704"/>
                    <exon start="19805" stop="19918"/>
                    <exon start="20007" stop="20068"/>
                    <exon start="20800" stop="20881"/>
                    <exon start="21022" stop="21078"/>
                    <exon start="21180" stop="21224"/>
                    <exon start="22867" stop="22935"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKRNQENQLSSSVTQVGKRQKIMVVDKGKKQKVEEESYIDEKLIFSIEKLQEIQDDLDKINEKASEEVLEIEQKYNKIRKPVYDKRNDIINSISDFWLTAFLSHPVLGDLLTEEDQKIFKFLSSIEVEDSKDVKFGYSITFNFKPNPFFENSKLSKTYTFLEDGPTKITATPIKWKEGKGIPNGVAQEKKGNKRSHAEESFFTWFSEVNKKDDSDDDENEVLEIQDEVAEIIKDDLWPNPLTYFTNEPDEEDFEGDEGGDEGEDSEDEGDEEEEEDDEDEDDK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="30383" PGL_stop="31031"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30383" e_stop="31031"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="30383" e_stop="31031" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30383" stop="31031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30384" stop="30768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAAAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  R  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  K  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  Q  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  P  K  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0181G10.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30384" stop="31031"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVAKGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="31853" PGL_stop="31156"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31853" e_stop="31156"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="31853" e_stop="31156" e_length="698"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31853" stop="31156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31853" stop="31315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31853" stop="31381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31813" stop="31465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231013" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCACTTCCCATGAACTTCAAAAAGAATTATGTGCATTTATATGTAATTGTTTATGTGCCTACGTGTGAACTAAATATTTTAAATCATTTGTTAAAAACATAAATTTTTTAGACCGACCTCAAATCAAAATTGTTTCTATGGTGGAGGAGCACGATCAATAATATCGTGGCATCATCCCTATAAAGAAATAAACATTTTTAAAAAAAAATAAAAATTCCTATTCATAAACTTATCAATTTTTAACTTTACTTTTGCACATACTAATTGCTTAATATTTGCCAATTTTGTCTATAACATAGTGTCGTATGTCAAAAATAAATAAAATGAGCTTAATTGTTTATTTATTGTCATCACCTAGCTTTACATATCTAAATAAATAAGAATAATAGTCTTAATTGTTTCGTATTTGTTATCACTTAGTAAGATTAAATAAATTAATAAACGACCTTGATTGCTACTTGTACCCCCACATAGATTGCATGAGATACGGCCGGGACCCACACTTGTGGACCTCGAGGGATGCCTAACACCTTCCCCTCGAGGTAATTTGAACCCTTACCCTAATCTCTGGCCCTTTGACTTTAGTTAGACTTAGTTAGGTTAGATAGGTGCCCTAACGCGCCTTAATTCGTTAGGTGGCGACTCCAAAAAACTCGAAATCCCAAAAGAGTTGTTAGGTCGCGCACAAAACCCGTTT</gDNA_template>
            <first_frame> T  T  S  H  E  L  Q  K  E  L  C  A  F  I  C  N  C  L  C  A  Y  V  *  T  K  Y  F  K  S  F  V  K  N  I  N  F  L  D  R  P  Q  I  K  I  V  S  M  V  E  E  H  D  Q  *  Y  R  G  I  I  P  I  K  K  *  T  F  L  K  K  N  K  N  S  Y  S  *  T  Y  Q  F  L  T  L  L  L  H  I  L  I  A  *  Y  L  P  I  L  S  I  T  *  C  R  M  S  K  I  N  K  M  S  L  I  V  Y  L  L  S  S  P  S  F  T  Y  L  N  K  *  E  *  *  S  *  L  F  R  I  C  Y  H  L  V  R  L  N  K  L  I  N  D  L  D  C  Y  L  Y  P  H  I  D  C  M  R  Y  G  R  D  P  H  L  W  T  S  R  D  A  *  H  L  P  L  E  V  I  *  T  L  T  L  I  S  G  P  L  T  L  V  R  L  S  *  V  R  *  V  P  *  R  A  L  I  R  *  V  A  T  P  K  N  S  K  S  Q  K  S  C  *  V  A  H  K  T  R   </first_frame>
            <second_frame>  P  L  P  M  N  F  K  K  N  Y  V  H  L  Y  V  I  V  Y  V  P  T  C  E  L  N  I  L  N  H  L  L  K  T  *  I  F  *  T  D  L  K  S  K  L  F  L  W  W  R  S  T  I  N  N  I  V  A  S  S  L  *  R  N  K  H  F  *  K  K  I  K  I  P  I  H  K  L  I  N  F  *  L  Y  F  C  T  Y  *  L  L  N  I  C  Q  F  C  L  *  H  S  V  V  C  Q  K  *  I  K  *  A  *  L  F  I  Y  C  H  H  L  A  L  H  I  *  I  N  K  N  N  S  L  N  C  F  V  F  V  I  T  *  *  D  *  I  N  *  *  T  T  L  I  A  T  C  T  P  T  *  I  A  *  D  T  A  G  T  H  T  C  G  P  R  G  M  P  N  T  F  P  S  R  *  F  E  P  L  P  *  S  L  A  L  *  L  *  L  D  L  V  R  L  D  R  C  P  N  A  P  *  F  V  R  W  R  L  Q  K  T  R  N  P  K  R  V  V  R  S  R  T  K  P  V  </second_frame>
            <third_frame>   H  F  P  *  T  S  K  R  I  M  C  I  Y  M  *  L  F  M  C  L  R  V  N  *  I  F  *  I  I  C  *  K  H  K  F  F  R  P  T  S  N  Q  N  C  F  Y  G  G  G  A  R  S  I  I  S  W  H  H  P  Y  K  E  I  N  I  F  K  K  K  *  K  F  L  F  I  N  L  S  I  F  N  F  T  F  A  H  T  N  C  L  I  F  A  N  F  V  Y  N  I  V  S  Y  V  K  N  K  *  N  E  L  N  C  L  F  I  V  I  T  *  L  Y  I  S  K  *  I  R  I  I  V  L  I  V  S  Y  L  L  S  L  S  K  I  K  *  I  N  K  R  P  *  L  L  L  V  P  P  H  R  L  H  E  I  R  P  G  P  T  L  V  D  L  E  G  C  L  T  P  S  P  R  G  N  L  N  P  Y  P  N  L  W  P  F  D  F  S  *  T  *  L  G  *  I  G  A  L  T  R  L  N  S  L  G  G  D  S  K  K  L  E  I  P  K  E  L  L  G  R  A  Q  N  P  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0181G10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="32841" PGL_stop="32423"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32841" e_stop="32423"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="32841" e_stop="32423" e_length="419"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32841" stop="32423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32638" stop="32425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220877" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCATTGCTCTCTTGCTACTTTAAACAATATATTAATATTTCGGCAAATATTCAAGTGCTTTTCTCCGCTATTTTCCTGCTTTGTTCGAGTACAAGGTGAATCATTTTGTTTTGTTTAACAGGTTTCATATTTGAAGTTCAAGTTGAAGATTAACTGAAGAAGGATTTGTTTATTTGTTTGAATGTATATATGTCTATATATTTTATTTTTTCCGCTATTTTATTTATTCGAATGTTGTAACAATTGTAACCCTAAGATCATATAATAAAGTTATTTGGGGGTCGTCTAGGGGAGGGGGATTTATATGCGTACTTGCTCATTATTTTTTTTAGAAATCATGCCTATAGGTTTGTCTTTAACCACCTAGATTTGATATTTGTAGGTGTTATAATCTAATCAATTTTCAATTTGCTTGAC</gDNA_template>
            <first_frame> S  H  C  S  L  A  T  L  N  N  I  L  I  F  R  Q  I  F  K  C  F  S  P  L  F  S  C  F  V  R  V  Q  G  E  S  F  C  F  V  *  Q  V  S  Y  L  K  F  K  L  K  I  N  *  R  R  I  C  L  F  V  *  M  Y  I  C  L  Y  I  L  F  F  P  L  F  Y  L  F  E  C  C  N  N  C  N  P  K  I  I  *  *  S  Y  L  G  V  V  *  G  R  G  I  Y  M  R  T  C  S  L  F  F  L  E  I  M  P  I  G  L  S  L  T  T  *  I  *  Y  L  *  V  L  *  S  N  Q  F  S  I  C  L   </first_frame>
            <second_frame>  L  I  A  L  L  L  L  *  T  I  Y  *  Y  F  G  K  Y  S  S  A  F  L  R  Y  F  P  A  L  F  E  Y  K  V  N  H  F  V  L  F  N  R  F  H  I  *  S  S  S  *  R  L  T  E  E  G  F  V  Y  L  F  E  C  I  Y  V  Y  I  F  Y  F  F  R  Y  F  I  Y  S  N  V  V  T  I  V  T  L  R  S  Y  N  K  V  I  W  G  S  S  R  G  G  G  F  I  C  V  L  A  H  Y  F  F  *  K  S  C  L  *  V  C  L  *  P  P  R  F  D  I  C  R  C  Y  N  L  I  N  F  Q  F  A  *  </second_frame>
            <third_frame>   S  L  L  S  C  Y  F  K  Q  Y  I  N  I  S  A  N  I  Q  V  L  F  S  A  I  F  L  L  C  S  S  T  R  *  I  I  L  F  C  L  T  G  F  I  F  E  V  Q  V  E  D  *  L  K  K  D  L  F  I  C  L  N  V  Y  M  S  I  Y  F  I  F  S  A  I  L  F  I  R  M  L  *  Q  L  *  P  *  D  H  I  I  K  L  F  G  G  R  L  G  E  G  D  L  Y  A  Y  L  L  I  I  F  F  R  N  H  A  Y  R  F  V  F  N  H  L  D  L  I  F  V  G  V  I  I  *  S  I  F  N  L  L  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0181G10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="41564" PGL_stop="42065"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41564" e_stop="42065"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="41564" e_stop="42065" e_length="502"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41564" stop="42065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTCCTTTATTTGAATTAAAATTTGATAGAAAAACATCTTCCAAAGCTACCCAGATGCTCGACGAGGTCTGGATGGAGTCGAGGTCCAGTTGCTGACGCTGATCTTTGCCTCTTTGCTTCCACTAGGGCCCCCTTTCTCCTCCTCGTTGATCACGACGTTGCAAACTTTCCCTTCTTCTTTGGTTAGCGATAACCCCTTCAAGTCGTCTGAGATCTCATCAATATTGTCTCCCATGAAACCTGCTGATCGAAATGATTGATACAATGGCGGTATGGGTTTCTTCAATGGATAGTAGTACCCATCTCTAGGTGGTCGCCAATCGAGCCATTCTTCGGTGGTGTATTTATAACCCAAACCAAAAGTGGTGGAATGTCGAACAGGCTGTATAGGTTCGACTATCCCTTGTAATTTAGCCCCCAAACCTTTCCCAAGCTCGAAACCGAACCAGGCCATCATATCTATGATTTTTTGGCTGAACCAAGGTTGCAACTCAATATTACC</gDNA_template>
            <first_frame> T  P  L  F  E  L  K  F  D  R  K  T  S  S  K  A  T  Q  M  L  D  E  V  W  M  E  S  R  S  S  C  *  R  *  S  L  P  L  C  F  H  *  G  P  L  S  P  P  R  *  S  R  R  C  K  L  S  L  L  L  W  L  A  I  T  P  S  S  R  L  R  S  H  Q  Y  C  L  P  *  N  L  L  I  E  M  I  D  T  M  A  V  W  V  S  S  M  D  S  S  T  H  L  *  V  V  A  N  R  A  I  L  R  W  C  I  Y  N  P  N  Q  K  W  W  N  V  E  Q  A  V  *  V  R  L  S  L  V  I  *  P  P  N  L  S  Q  A  R  N  R  T  R  P  S  Y  L  *  F  F  G  *  T  K  V  A  T  Q  Y  Y  </first_frame>
            <second_frame>  L  L  Y  L  N  *  N  L  I  E  K  H  L  P  K  L  P  R  C  S  T  R  S  G  W  S  R  G  P  V  A  D  A  D  L  C  L  F  A  S  T  R  A  P  F  L  L  L  V  D  H  D  V  A  N  F  P  F  F  F  G  *  R  *  P  L  Q  V  V  *  D  L  I  N  I  V  S  H  E  T  C  *  S  K  *  L  I  Q  W  R  Y  G  F  L  Q  W  I  V  V  P  I  S  R  W  S  P  I  E  P  F  F  G  G  V  F  I  T  Q  T  K  S  G  G  M  S  N  R  L  Y  R  F  D  Y  P  L  *  F  S  P  Q  T  F  P  K  L  E  T  E  P  G  H  H  I  Y  D  F  L  A  E  P  R  L  Q  L  N  I  T </second_frame>
            <third_frame>   S  F  I  *  I  K  I  *  *  K  N  I  F  Q  S  Y  P  D  A  R  R  G  L  D  G  V  E  V  Q  L  L  T  L  I  F  A  S  L  L  P  L  G  P  P  F  S  S  S  L  I  T  T  L  Q  T  F  P  S  S  L  V  S  D  N  P  F  K  S  S  E  I  S  S  I  L  S  P  M  K  P  A  D  R  N  D  *  Y  N  G  G  M  G  F  F  N  G  *  *  Y  P  S  L  G  G  R  Q  S  S  H  S  S  V  V  Y  L  *  P  K  P  K  V  V  E  C  R  T  G  C  I  G  S  T  I  P  C  N  L  A  P  K  P  F  P  S  S  K  P  N  Q  A  I  I  S  M  I  F  W  L  N  Q  G  C  N  S  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0181G10.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41593" stop="41823"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNIFQSYPDARRGLDGVEVQLLTLIFASLLPLGPPFSSSLITTLQTFPSSLVSDNPFKSSEISSILSPMKPADRND*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="51166" PGL_stop="51973"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51166" e_stop="51973"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="51166" e_stop="51973" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51166" stop="51973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTAAAAATTCTAAAATTTAAAATACATATTTAATCGAATAGTATTTCTAAAAAGTTCAAAGGTCGGTCAAAATTGGGTGTCAACAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCCTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGCGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> D  *  K  F  *  N  L  K  Y  I  F  N  R  I  V  F  L  K  S  S  K  V  G  Q  N  W  V  S  T  K  G  L  T  A  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  R  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  I  K  N  S  K  I  *  N  T  Y  L  I  E  *  Y  F  *  K  V  Q  R  S  V  K  I  G  C  Q  Q  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  P  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   L  K  I  L  K  F  K  I  H  I  *  S  N  S  I  S  K  K  F  K  G  R  S  K  L  G  V  N  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  A  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0181G10.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51201" stop="51971"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNSISKKFKGRSKLGVNKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYAFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="61143" PGL_stop="62844"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61143" e_stop="61647"/>
            <exon e_start="61842" e_stop="62844"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.947" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61143" e_stop="61647" e_length="505"/>
          </exon>
          <intron i_serial="1" don_prob="0.947" acc_prob="0.999">
            <gDNA_intron_boundary i_start="61648" i_stop="61841" i_length="194"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="61842" e_stop="62844" e_length="1003"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61143" stop="61647"/>
              <exon start="61842" stop="62844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61146" stop="61647"/>
              <exon start="61842" stop="61955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265357" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGTTTGTTTTTTTTTGTGAAAATTTAGTTATTAAGAGTGATCATGGAAGGAGGAGGAGGTGACGATCATCTCCACCATCACCATCACAATCACCAGCACCACCAACATCACCAGCAATATCGTCCTAACAACTTCCCTTTCCAATTACTCGAAAAAAAAGAAGACGAACCTTGCTCCAGCTCCTCCGCAGCTAATAATATTAATTATCCTTCGCTAGCCATTTCCCCATCCGATACAAATACGAATATAAACCCTAATAGTAACGACCTTCAAATTACAGTTGCCTCTACTGAGACTGCTAAAAAGCCAGCTCCCAAGAGAACTTCCACTAAAGACCGCCACACTAAGGTTGATGGCCGTGGCAGACGTATACGTATGCCGGCCCTTTGTGCTGCTAGGGTTTTTCAGCTCACTCGAGAACTCGGTCACAAATCCGATGGTGAAACCATCGAATGGCTTCTTCAACAAGCTGAACCTGCAGTTATAGCTGCTACGGGAACAG : GTACAATTCCGGCGAATTTCACGTCACTCAACATTTCATTACGTAGTTCAGGATCCAGCATGTCCGTACCATCTCAACTTCGATCTTCGTATTTCAATCCGAATTTTTCACTGTCCCAAAGGCGCAGTTTGTTTCAGGGTATCGGTTTATCATCAGACAGATCTGCAACTACAACGTTGCTGAATTTTCAGACGGGTAATTCGAACCTCCATCAATTCCAAGCTAAACAAGAAATGCGAGACAATTCGTTAGATTTAACAGAAACAAGTATAGAAGAGAGTCTATCGCGAAAAAGGCGACAAGACCTCGATTTACAACAAGAACAACAACAAAATCAGCAGCAGCAAAACGAGCAACAAATGGGAAGTTATTTGTTACAATCATCAAGTAGTGGGACTATGCCAACTAGTCATTCTTCAATTCCAGCTAACTTTTGGATGTTGACGAATAATAATACCCAAGTATTGGGAGGCGATCCAGTGTGGACGTTTCCATCGGTTAACAACTCTGGTGCTGCAGCTGCTGCTTTGTATAGAAGTACAATGTCAAGTGGATTACATTTCATGAATTTTCCTACTCCTGTAGCACTATTGCCAACTCAGCAATTTGGCGCTGGTAGTAATGGCAGTACACTAGCCGGAGAAGGCCAATTAGGCATGGTCACCGGATTAAATCCGTATAGACCATGTTCCGGTGTATCGGAATCTCAGGCTAGTGGATCACATTCACATCACGGTGGTGGTGGAGGTGGTGATGATCGTCATGATTCAACAAGCCATCATAATTCCTAAAAAGAAGTTGAGTTTTTGTGTGATAAATTAAAAAGTTTGGGATGGTTAATTAAACACACAATACGTGAGGTTTGATTATATGCTTGCTCTATAATTTTGAATTTGCTTCTATTATTATTATTTTCACCTCTTCTTTTTTTGTGTGATTAATATTTGCCTGCCGGTTTTTTTAGGGTTTGAAGAGGGAAATATATTTTTTATTTTATTACAAA</gDNA_template>
            <first_frame> K  S  L  F  F  F  V  K  I  *  L  L  R  V  I  M  E  G  G  G  G  D  D  H  L  H  H  H  H  H  N  H  Q  H  H  Q  H  H  Q  Q  Y  R  P  N  N  F  P  F  Q  L  L  E  K  K  E  D  E  P  C  S  S  S  S  A  A  N  N  I  N  Y  P  S  L  A  I  S  P  S  D  T  N  T  N  I  N  P  N  S  N  D  L  Q  I  T  V  A  S  T  E  T  A  K  K  P  A  P  K  R  T  S  T  K  D  R  H  T  K  V  D  G  R  G  R  R  I  R  M  P  A  L  C  A  A  R  V  F  Q  L  T  R  E  L  G  H  K  S  D  G  E  T  I  E  W  L  L  Q  Q  A  E  P  A  V  I  A  A  T  G  T   : G  T  I  P  A  N  F  T  S  L  N  I  S  L  R  S  S  G  S  S  M  S  V  P  S  Q  L  R  S  S  Y  F  N  P  N  F  S  L  S  Q  R  R  S  L  F  Q  G  I  G  L  S  S  D  R  S  A  T  T  T  L  L  N  F  Q  T  G  N  S  N  L  H  Q  F  Q  A  K  Q  E  M  R  D  N  S  L  D  L  T  E  T  S  I  E  E  S  L  S  R  K  R  R  Q  D  L  D  L  Q  Q  E  Q  Q  Q  N  Q  Q  Q  Q  N  E  Q  Q  M  G  S  Y  L  L  Q  S  S  S  S  G  T  M  P  T  S  H  S  S  I  P  A  N  F  W  M  L  T  N  N  N  T  Q  V  L  G  G  D  P  V  W  T  F  P  S  V  N  N  S  G  A  A  A  A  A  L  Y  R  S  T  M  S  S  G  L  H  F  M  N  F  P  T  P  V  A  L  L  P  T  Q  Q  F  G  A  G  S  N  G  S  T  L  A  G  E  G  Q  L  G  M  V  T  G  L  N  P  Y  R  P  C  S  G  V  S  E  S  Q  A  S  G  S  H  S  H  H  G  G  G  G  G  G  D  D  R  H  D  S  T  S  H  H  N  S  *  K  E  V  E  F  L  C  D  K  L  K  S  L  G  W  L  I  K  H  T  I  R  E  V  *  L  Y  A  C  S  I  I  L  N  L  L  L  L  L  L  F  S  P  L  L  F  L  C  D  *  Y  L  P  A  G  F  F  R  V  *  R  G  K  Y  I  F  Y  F  I  T   </first_frame>
            <second_frame>  K  V  C  F  F  L  *  K  F  S  Y  *  E  *  S  W  K  E  E  E  V  T  I  I  S  T  I  T  I  T  I  T  S  T  T  N  I  T  S  N  I  V  L  T  T  S  L  S  N  Y  S  K  K  K  K  T  N  L  A  P  A  P  P  Q  L  I  I  L  I  I  L  R  *  P  F  P  H  P  I  Q  I  R  I  *  T  L  I  V  T  T  F  K  L  Q  L  P  L  L  R  L  L  K  S  Q  L  P  R  E  L  P  L  K  T  A  T  L  R  L  M  A  V  A  D  V  Y  V  C  R  P  F  V  L  L  G  F  F  S  S  L  E  N  S  V  T  N  P  M  V  K  P  S  N  G  F  F  N  K  L  N  L  Q  L  *  L  L  R  E  Q  :  V  Q  F  R  R  I  S  R  H  S  T  F  H  Y  V  V  Q  D  P  A  C  P  Y  H  L  N  F  D  L  R  I  S  I  R  I  F  H  C  P  K  G  A  V  C  F  R  V  S  V  Y  H  Q  T  D  L  Q  L  Q  R  C  *  I  F  R  R  V  I  R  T  S  I  N  S  K  L  N  K  K  C  E  T  I  R  *  I  *  Q  K  Q  V  *  K  R  V  Y  R  E  K  G  D  K  T  S  I  Y  N  K  N  N  N  K  I  S  S  S  K  T  S  N  K  W  E  V  I  C  Y  N  H  Q  V  V  G  L  C  Q  L  V  I  L  Q  F  Q  L  T  F  G  C  *  R  I  I  I  P  K  Y  W  E  A  I  Q  C  G  R  F  H  R  L  T  T  L  V  L  Q  L  L  L  C  I  E  V  Q  C  Q  V  D  Y  I  S  *  I  F  L  L  L  *  H  Y  C  Q  L  S  N  L  A  L  V  V  M  A  V  H  *  P  E  K  A  N  *  A  W  S  P  D  *  I  R  I  D  H  V  P  V  Y  R  N  L  R  L  V  D  H  I  H  I  T  V  V  V  E  V  V  M  I  V  M  I  Q  Q  A  I  I  I  P  K  K  K  L  S  F  C  V  I  N  *  K  V  W  D  G  *  L  N  T  Q  Y  V  R  F  D  Y  M  L  A  L  *  F  *  I  C  F  Y  Y  Y  Y  F  H  L  F  F  F  C  V  I  N  I  C  L  P  V  F  L  G  F  E  E  G  N  I  F  F  I  L  L  Q  </second_frame>
            <third_frame>   K  F  V  F  F  C  E  N  L  V  I  K  S  D  H  G  R  R  R  R  *  R  S  S  P  P  S  P  S  Q  S  P  A  P  P  T  S  P  A  I  S  S  *  Q  L  P  F  P  I  T  R  K  K  R  R  R  T  L  L  Q  L  L  R  S  *  *  Y  *  L  S  F  A  S  H  F  P  I  R  Y  K  Y  E  Y  K  P  *  *  *  R  P  S  N  Y  S  C  L  Y  *  D  C  *  K  A  S  S  Q  E  N  F  H  *  R  P  P  H  *  G  *  W  P  W  Q  T  Y  T  Y  A  G  P  L  C  C  *  G  F  S  A  H  S  R  T  R  S  Q  I  R  W  *  N  H  R  M  A  S  S  T  S  *  T  C  S  Y  S  C  Y  G  N  R :   Y  N  S  G  E  F  H  V  T  Q  H  F  I  T  *  F  R  I  Q  H  V  R  T  I  S  T  S  I  F  V  F  Q  S  E  F  F  T  V  P  K  A  Q  F  V  S  G  Y  R  F  I  I  R  Q  I  C  N  Y  N  V  A  E  F  S  D  G  *  F  E  P  P  S  I  P  S  *  T  R  N  A  R  Q  F  V  R  F  N  R  N  K  Y  R  R  E  S  I  A  K  K  A  T  R  P  R  F  T  T  R  T  T  T  K  S  A  A  A  K  R  A  T  N  G  K  L  F  V  T  I  I  K  *  W  D  Y  A  N  *  S  F  F  N  S  S  *  L  L  D  V  D  E  *  *  Y  P  S  I  G  R  R  S  S  V  D  V  S  I  G  *  Q  L  W  C  C  S  C  C  F  V  *  K  Y  N  V  K  W  I  T  F  H  E  F  S  Y  S  C  S  T  I  A  N  S  A  I  W  R  W  *  *  W  Q  Y  T  S  R  R  R  P  I  R  H  G  H  R  I  K  S  V  *  T  M  F  R  C  I  G  I  S  G  *  W  I  T  F  T  S  R  W  W  W  R  W  *  *  S  S  *  F  N  K  P  S  *  F  L  K  R  S  *  V  F  V  *  *  I  K  K  F  G  M  V  N  *  T  H  N  T  *  G  L  I  I  C  L  L  Y  N  F  E  F  A  S  I  I  I  I  F  T  S  S  F  F  V  *  L  I  F  A  C  R  F  F  *  G  L  K  R  E  I  Y  F  L  F  Y  Y  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0181G10.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61173" stop="61647"/>
                    <exon start="61842" stop="62632"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1263</number_coding_nucleotides>
                  <number_encoded_amino_acids>421</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLRVIMEGGGGDDHLHHHHHNHQHHQHHQQYRPNNFPFQLLEKKEDEPCSSSSAANNINYPSLAISPSDTNTNINPNSNDLQITVASTETAKKPAPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSLSQRRSLFQGIGLSSDRSATTTLLNFQTGNSNLHQFQAKQEMRDNSLDLTETSIEESLSRKRRQDLDLQQEQQQNQQQQNEQQMGSYLLQSSSSGTMPTSHSSIPANFWMLTNNNTQVLGGDPVWTFPSVNNSGAAAAALYRSTMSSGLHFMNFPTPVALLPTQQFGAGSNGSTLAGEGQLGMVTGLNPYRPCSGVSESQASGSHSHHGGGGGGDDRHDSTSHHNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="78296" PGL_stop="75544"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78296" e_stop="78189"/>
            <exon e_start="78012" e_stop="77924"/>
            <exon e_start="77831" e_stop="77313"/>
            <exon e_start="75576" e_stop="75544"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.842" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.943" e_score="0.989"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.979"/>
          <exon-only e_score="0.697"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78296" e_stop="78189" e_length="108"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.842">
            <gDNA_intron_boundary i_start="78188" i_stop="78013" i_length="176"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="78012" e_stop="77924" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.943">
            <gDNA_intron_boundary i_start="77923" i_stop="77832" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="0.979">
            <gDNA_exon_boundary e_start="77831" e_stop="77313" e_length="519"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="77312" i_stop="75577" i_length="1736"/>
          </intron>
          <exon e_serial="4" e_score="0.697">
            <gDNA_exon_boundary e_start="75576" e_stop="75544" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78296" stop="78189"/>
              <exon start="78012" stop="77924"/>
              <exon start="77831" stop="77313"/>
              <exon start="75576" stop="75544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547444" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGTTGTCTACCTGGATGAGCCGAGTACTGGACTTGATCCAGCTTCAAGAGATACCTTATGGACTGTTGTGAAGAATGCACGGAAAGGCAGAGCGATAATTCTCACTA : CCCATTCAATGGAAGAAGCGGATTATTTATGTGATCGCTTAGGAATCTTCGTTGATGGAAGCTTGCAATGCATAGCGAATTCATCAGAG : TTGAAGACAAGATATGGAGGGTCTTATGTGCTCGCGATAACTACATCAGCTGATAATGAGGTGGAAGTGGAGAAAATGGTGCGACAGATATGCCCAAATGCCAACAAAGTGTATCATTTATCAGGTACACAGAAGTTCGAGTTGCCAAAACATGAATCGAAAATTGCAGATGTATTTCAACTAGTTGAGAATGCAAAGAGTAGATTTCCAATTTATGCTTGGGGTATGGCTGATACAACTTTAGAGGATGTTTTTATCAAGGTTGCTTCTTGTGCTCAATCCTTTAATGAAGCATGATCATAACATTCAACCACAAATTAGAAGGGAAAAAAAAAAAGAAGGATCATATGTGCATAATGTTTTTTTTTTGCCTTAATTAGGAAATATTTAGGTTCATGTAGATATATCAAGTACAGAGCATATGTGACTCCTATTTTGTCATGTAAATTGTGTACAATGATGCCAATCTCTGGCGTTTTGTTCGTGGAATAGAAAGAGTTTGTTGTATCAACGTATTTA : AAAAAAAAAAAAAAGTAGGTGGGAGGTGGGTAT</gDNA_template>
            <first_frame> R  L  S  T  W  M  S  R  V  L  D  L  I  Q  L  Q  E  I  P  Y  G  L  L  *  R  M  H  G  K  A  E  R  *  F  S  L  :  P  I  Q  W  K  K  R  I  I  Y  V  I  A  *  E  S  S  L  M  E  A  C  N  A  *  R  I  H  Q  S :   *  R  Q  D  M  E  G  L  M  C  S  R  *  L  H  Q  L  I  M  R  W  K  W  R  K  W  C  D  R  Y  A  Q  M  P  T  K  C  I  I  Y  Q  V  H  R  S  S  S  C  Q  N  M  N  R  K  L  Q  M  Y  F  N  *  L  R  M  Q  R  V  D  F  Q  F  M  L  G  V  W  L  I  Q  L  *  R  M  F  L  S  R  L  L  L  V  L  N  P  L  M  K  H  D  H  N  I  Q  P  Q  I  R  R  E  K  K  K  E  G  S  Y  V  H  N  V  F  F  L  P  *  L  G  N  I  *  V  H  V  D  I  S  S  T  E  H  M  *  L  L  F  C  H  V  N  C  V  Q  *  C  Q  S  L  A  F  C  S  W  N  R  K  S  L  L  Y  Q  R  I  * :   K  K  K  K  S  R  W  E  V  G   </first_frame>
            <second_frame>  G  C  L  P  G  *  A  E  Y  W  T  *  S  S  F  K  R  Y  L  M  D  C  C  E  E  C  T  E  R  Q  S  D  N  S  H  Y :   P  F  N  G  R  S  G  L  F  M  *  S  L  R  N  L  R  *  W  K  L  A  M  H  S  E  F  I  R   : V  E  D  K  I  W  R  V  L  C  A  R  D  N  Y  I  S  *  *  *  G  G  S  G  E  N  G  A  T  D  M  P  K  C  Q  Q  S  V  S  F  I  R  Y  T  E  V  R  V  A  K  T  *  I  E  N  C  R  C  I  S  T  S  *  E  C  K  E  *  I  S  N  L  C  L  G  Y  G  *  Y  N  F  R  G  C  F  Y  Q  G  C  F  L  C  S  I  L  *  *  S  M  I  I  T  F  N  H  K  L  E  G  K  K  K  K  K  D  H  M  C  I  M  F  F  F  C  L  N  *  E  I  F  R  F  M  *  I  Y  Q  V  Q  S  I  C  D  S  Y  F  V  M  *  I  V  Y  N  D  A  N  L  W  R  F  V  R  G  I  E  R  V  C  C  I  N  V  F   : K  K  K  K  K  V  G  G  R  W  V  </second_frame>
            <third_frame>   V  V  Y  L  D  E  P  S  T  G  L  D  P  A  S  R  D  T  L  W  T  V  V  K  N  A  R  K  G  R  A  I  I  L  T   : T  H  S  M  E  E  A  D  Y  L  C  D  R  L  G  I  F  V  D  G  S  L  Q  C  I  A  N  S  S  E  :  L  K  T  R  Y  G  G  S  Y  V  L  A  I  T  T  S  A  D  N  E  V  E  V  E  K  M  V  R  Q  I  C  P  N  A  N  K  V  Y  H  L  S  G  T  Q  K  F  E  L  P  K  H  E  S  K  I  A  D  V  F  Q  L  V  E  N  A  K  S  R  F  P  I  Y  A  W  G  M  A  D  T  T  L  E  D  V  F  I  K  V  A  S  C  A  Q  S  F  N  E  A  *  S  *  H  S  T  T  N  *  K  G  K  K  K  R  R  I  I  C  A  *  C  F  F  F  A  L  I  R  K  Y  L  G  S  C  R  Y  I  K  Y  R  A  Y  V  T  P  I  L  S  C  K  L  C  T  M  M  P  I  S  G  V  L  F  V  E  *  K  E  F  V  V  S  T  Y  L  :  K  K  K  K  K  *  V  G  G  G  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0181G10.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78294" stop="78189"/>
                    <exon start="78012" stop="77924"/>
                    <exon start="77831" stop="77535"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVYLDEPSTGLDPASRDTLWTVVKNARKGRAIILTTHSMEEADYLCDRLGIFVDGSLQCIANSSELKTRYGGSYVLAITTSADNEVEVEKMVRQICPNANKVYHLSGTQKFELPKHESKIADVFQLVENAKSRFPIYAWGMADTTLEDVFIKVASCAQSFNEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="83349" PGL_stop="81122"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83349" e_stop="83207"/>
            <exon e_start="82073" e_stop="81695"/>
            <exon e_start="81595" e_stop="81528"/>
            <exon e_start="81441" e_stop="81303"/>
            <exon e_start="81202" e_stop="81122"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="0.993"/>
          <exon-intron don_prob="0.900" acc_prob="0.855" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.669" acc_prob="0.774" e_score="0.942"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="83349" e_stop="83207" e_length="143"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="83206" i_stop="82074" i_length="1133"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82073" e_stop="81695" e_length="379"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.855">
            <gDNA_intron_boundary i_start="81694" i_stop="81596" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81595" e_stop="81528" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="81527" i_stop="81442" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="0.942">
            <gDNA_exon_boundary e_start="81441" e_stop="81303" e_length="139"/>
          </exon>
          <intron i_serial="4" don_prob="0.669" acc_prob="0.774">
            <gDNA_intron_boundary i_start="81302" i_stop="81203" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="0.963">
            <gDNA_exon_boundary e_start="81202" e_stop="81122" e_length="81"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83349" stop="83207"/>
              <exon start="82073" stop="81695"/>
              <exon start="81595" stop="81581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83349" stop="83207"/>
              <exon start="82073" stop="81703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83348" stop="83207"/>
              <exon start="82073" stop="81745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83313" stop="83207"/>
              <exon start="82073" stop="81695"/>
              <exon start="81595" stop="81528"/>
              <exon start="81441" stop="81303"/>
              <exon start="81202" stop="81122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83312" stop="83207"/>
              <exon start="82073" stop="81695"/>
              <exon start="81595" stop="81577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361068" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAATTAAAAAGAGAGGATTGTTTTTTCTACTTTAGTTACTGGGGCTGAAACGGAGGTCATTCAATGGCAGACTCCGTGACAGCTCCAGCGACTTACGGGACTCAAGCTGATGCTTTGCTTAGGAAGAATCTGGCGTTTCAG : AAACGAAATGTCAAGACAAATGTTCGCCTCATCTTAGTCCCTATTTCACTCCTCCTTTTAATAAGGGCCATTGAATTCTCGAGTACTGTGATGACGGCCAAAGACACTAAATGTGGCTGCCAATGTGTTGAAAAAAATGGTACAGGAAAATGTGTAAAAGAATGTGGTCTGCAATACTCAAATCCGTTACAAGCAGCAAGTTGTGAAGTTAAAGAACCATATGAATGGCATCCTGTTTTCCAGTTACCGGAACCTCAATTTAGTGCTGTAAAATCTGATGTTATTACATATCCAGACTTGCCTAATGAGTCATGCAGAGACTCTAATTCTTGTCCAGCTATTATACTAGTTACTGGATCTAATCAAACTTTTGGACAAA : GTCTGAGTGGGAACATGGTCAAAAACGACACAACCGTAGAGCCTACTTTTATCACCAACCGGATCATT : GGTACAGAGATTCCAGCTGCGCGTACGAGTTTTCAAAACCCTGCTTTCTACTCACCAAAGGCTACACTCTATATTATTCAAGCTGGGTGTCCAGCGGATTTCAAGGGTCTAGACATCTATGATAATTACGGAAGCTATA : TGTTACAATGTCGTACAGGTTTATCTTTGTGGCGTAATAGTCCCTCTGAGATCAATGATGAGCTGTTTAAAGGTTACATAA</gDNA_template>
            <first_frame> K  N  *  K  E  R  I  V  F  S  T  L  V  T  G  A  E  T  E  V  I  Q  W  Q  T  P  *  Q  L  Q  R  L  T  G  L  K  L  M  L  C  L  G  R  I  W  R  F  R :   N  E  M  S  R  Q  M  F  A  S  S  *  S  L  F  H  S  S  F  *  *  G  P  L  N  S  R  V  L  *  *  R  P  K  T  L  N  V  A  A  N  V  L  K  K  M  V  Q  E  N  V  *  K  N  V  V  C  N  T  Q  I  R  Y  K  Q  Q  V  V  K  L  K  N  H  M  N  G  I  L  F  S  S  Y  R  N  L  N  L  V  L  *  N  L  M  L  L  H  I  Q  T  C  L  M  S  H  A  E  T  L  I  L  V  Q  L  L  Y  *  L  L  D  L  I  K  L  L  D  K  :  V  *  V  G  T  W  S  K  T  T  Q  P  *  S  L  L  L  S  P  T  G  S  L :   V  Q  R  F  Q  L  R  V  R  V  F  K  T  L  L  S  T  H  Q  R  L  H  S  I  L  F  K  L  G  V  Q  R  I  S  R  V  *  T  S  M  I  I  T  E  A  I  :  C  Y  N  V  V  Q  V  Y  L  C  G  V  I  V  P  L  R  S  M  M  S  C  L  K  V  T  * </first_frame>
            <second_frame>  R  I  K  K  R  G  L  F  F  L  L  *  L  L  G  L  K  R  R  S  F  N  G  R  L  R  D  S  S  S  D  L  R  D  S  S  *  C  F  A  *  E  E  S  G  V  S   : E  T  K  C  Q  D  K  C  S  P  H  L  S  P  Y  F  T  P  P  F  N  K  G  H  *  I  L  E  Y  C  D  D  G  Q  R  H  *  M  W  L  P  M  C  *  K  K  W  Y  R  K  M  C  K  R  M  W  S  A  I  L  K  S  V  T  S  S  K  L  *  S  *  R  T  I  *  M  A  S  C  F  P  V  T  G  T  S  I  *  C  C  K  I  *  C  Y  Y  I  S  R  L  A  *  *  V  M  Q  R  L  *  F  L  S  S  Y  Y  T  S  Y  W  I  *  S  N  F  W  T  K :   S  E  W  E  H  G  Q  K  R  H  N  R  R  A  Y  F  Y  H  Q  P  D  H   : W  Y  R  D  S  S  C  A  Y  E  F  S  K  P  C  F  L  L  T  K  G  Y  T  L  Y  Y  S  S  W  V  S  S  G  F  Q  G  S  R  H  L  *  *  L  R  K  L  Y :   V  T  M  S  Y  R  F  I  F  V  A  *  *  S  L  *  D  Q  *  *  A  V  *  R  L  H   </second_frame>
            <third_frame>   E  L  K  R  E  D  C  F  F  Y  F  S  Y  W  G  *  N  G  G  H  S  M  A  D  S  V  T  A  P  A  T  Y  G  T  Q  A  D  A  L  L  R  K  N  L  A  F  Q  :  K  R  N  V  K  T  N  V  R  L  I  L  V  P  I  S  L  L  L  L  I  R  A  I  E  F  S  S  T  V  M  T  A  K  D  T  K  C  G  C  Q  C  V  E  K  N  G  T  G  K  C  V  K  E  C  G  L  Q  Y  S  N  P  L  Q  A  A  S  C  E  V  K  E  P  Y  E  W  H  P  V  F  Q  L  P  E  P  Q  F  S  A  V  K  S  D  V  I  T  Y  P  D  L  P  N  E  S  C  R  D  S  N  S  C  P  A  I  I  L  V  T  G  S  N  Q  T  F  G  Q   : S  L  S  G  N  M  V  K  N  D  T  T  V  E  P  T  F  I  T  N  R  I  I  :  G  T  E  I  P  A  A  R  T  S  F  Q  N  P  A  F  Y  S  P  K  A  T  L  Y  I  I  Q  A  G  C  P  A  D  F  K  G  L  D  I  Y  D  N  Y  G  S  Y   : M  L  Q  C  R  T  G  L  S  L  W  R  N  S  P  S  E  I  N  D  E  L  F  K  G  Y  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0181G10.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83299" stop="83207"/>
                    <exon start="82073" stop="81695"/>
                    <exon start="81595" stop="81528"/>
                    <exon start="81441" stop="81303"/>
                    <exon start="81202" stop="81123"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NGGHSMADSVTAPATYGTQADALLRKNLAFQKRNVKTNVRLILVPISLLLLIRAIEFSSTVMTAKDTKCGCQCVEKNGTGKCVKECGLQYSNPLQAASCEVKEPYEWHPVFQLPEPQFSAVKSDVITYPDLPNESCRDSNSCPAIILVTGSNQTFGQSLSGNMVKNDTTVEPTFITNRIIGTEIPAARTSFQNPAFYSPKATLYIIQAGCPADFKGLDIYDNYGSYMLQCRTGLSLWRNSPSEINDELFKGYI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="83596" PGL_stop="84486"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83596" e_stop="84051"/>
            <exon e_start="84143" e_stop="84374"/>
            <exon e_start="84457" e_stop="84486"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.988"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="0.991"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="83596" e_stop="84051" e_length="456"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="84052" i_stop="84142" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="84143" e_stop="84374" e_length="232"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="84375" i_stop="84456" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="0.967">
            <gDNA_exon_boundary e_start="84457" e_stop="84486" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83596" stop="83998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83616" stop="84051"/>
              <exon start="84143" stop="84231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83620" stop="83941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83630" stop="83999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83631" stop="84051"/>
              <exon start="84143" stop="84317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83633" stop="84051"/>
              <exon start="84143" stop="84291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83639" stop="84051"/>
              <exon start="84143" stop="84231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83639" stop="84000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83643" stop="84051"/>
              <exon start="84143" stop="84286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83645" stop="84051"/>
              <exon start="84143" stop="84374"/>
              <exon start="84457" stop="84486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83645" stop="84042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83849" stop="84051"/>
              <exon start="84143" stop="84318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362204" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTTTAAGAAATAAGTTTTTTTTTTTTTTTAAAAAAAAAGTAGAAGAATTTGAATTGAAGATAAAAGAAGAAGAAGATAGAAGGGCAATGGAATTGCAGGGGGGAATCCCTCTGCTAATGCAGCAATACAAAGCATTATTTAAGAAAAATTTGTTGCTTGCATTGCGTAACAAGCCCGCAACGTTCCTACAGCTCTTCTCATCTTTCTTCTTCATTTTCCTTCTATTCTGCATCAAATTATCTGATGAATCGCGCAATGCAGATAACACCTTTGCTAAAGAATTGCGCGATCCTAAGCCTCTTATGGCGCCATCTATCCCACCTTGTGAGGACAAGTTTTATATTAAGACTCCATGCTATGATTTCATTTGGAGTGGAAAACATAGTAAAACTATTGGGGATGTTGTTAAGGGAATTATGGCAAATAATCCTGGTAGGCCTATTCCTGCCAACAAG : GTTCTAGCATTTAACACAGCACAGGATGTGGATAAATGGCTTTTCGATAATCCTGTGCGTTGTCCTGCAGCTGTGCACTTCACAATAGTGAAGGGGAATAAAATTAGTTATGGTATTCAGACAAACTCCACGGATGTAGTGAAACGAGGAGTAACTGAGGATCCAACTTTTAAGTTCCAAATCCCACTTCAAATAGCAGTAGAACGTGAAATCGCGAGGAATCTGATTGGAG : ATCCAAAATTCCCCTGGGATGTCAGTTTTA</gDNA_template>
            <first_frame> S  L  R  N  K  F  F  F  F  F  K  K  K  V  E  E  F  E  L  K  I  K  E  E  E  D  R  R  A  M  E  L  Q  G  G  I  P  L  L  M  Q  Q  Y  K  A  L  F  K  K  N  L  L  L  A  L  R  N  K  P  A  T  F  L  Q  L  F  S  S  F  F  F  I  F  L  L  F  C  I  K  L  S  D  E  S  R  N  A  D  N  T  F  A  K  E  L  R  D  P  K  P  L  M  A  P  S  I  P  P  C  E  D  K  F  Y  I  K  T  P  C  Y  D  F  I  W  S  G  K  H  S  K  T  I  G  D  V  V  K  G  I  M  A  N  N  P  G  R  P  I  P  A  N  K  :  V  L  A  F  N  T  A  Q  D  V  D  K  W  L  F  D  N  P  V  R  C  P  A  A  V  H  F  T  I  V  K  G  N  K  I  S  Y  G  I  Q  T  N  S  T  D  V  V  K  R  G  V  T  E  D  P  T  F  K  F  Q  I  P  L  Q  I  A  V  E  R  E  I  A  R  N  L  I  G   : D  P  K  F  P  W  D  V  S  F  </first_frame>
            <second_frame>  V  *  E  I  S  F  F  F  F  L  K  K  K  *  K  N  L  N  *  R  *  K  K  K  K  I  E  G  Q  W  N  C  R  G  E  S  L  C  *  C  S  N  T  K  H  Y  L  R  K  I  C  C  L  H  C  V  T  S  P  Q  R  S  Y  S  S  S  H  L  S  S  S  F  S  F  Y  S  A  S  N  Y  L  M  N  R  A  M  Q  I  T  P  L  L  K  N  C  A  I  L  S  L  L  W  R  H  L  S  H  L  V  R  T  S  F  I  L  R  L  H  A  M  I  S  F  G  V  E  N  I  V  K  L  L  G  M  L  L  R  E  L  W  Q  I  I  L  V  G  L  F  L  P  T  R :   F  *  H  L  T  Q  H  R  M  W  I  N  G  F  S  I  I  L  C  V  V  L  Q  L  C  T  S  Q  *  *  R  G  I  K  L  V  M  V  F  R  Q  T  P  R  M  *  *  N  E  E  *  L  R  I  Q  L  L  S  S  K  S  H  F  K  *  Q  *  N  V  K  S  R  G  I  *  L  E  :  I  Q  N  S  P  G  M  S  V  L </second_frame>
            <third_frame>   F  K  K  *  V  F  F  F  F  *  K  K  S  R  R  I  *  I  E  D  K  R  R  R  R  *  K  G  N  G  I  A  G  G  N  P  S  A  N  A  A  I  Q  S  I  I  *  E  K  F  V  A  C  I  A  *  Q  A  R  N  V  P  T  A  L  L  I  F  L  L  H  F  P  S  I  L  H  Q  I  I  *  *  I  A  Q  C  R  *  H  L  C  *  R  I  A  R  S  *  A  S  Y  G  A  I  Y  P  T  L  *  G  Q  V  L  Y  *  D  S  M  L  *  F  H  L  E  W  K  T  *  *  N  Y  W  G  C  C  *  G  N  Y  G  K  *  S  W  *  A  Y  S  C  Q  Q   : G  S  S  I  *  H  S  T  G  C  G  *  M  A  F  R  *  S  C  A  L  S  C  S  C  A  L  H  N  S  E  G  E  *  N  *  L  W  Y  S  D  K  L  H  G  C  S  E  T  R  S  N  *  G  S  N  F  *  V  P  N  P  T  S  N  S  S  R  T  *  N  R  E  E  S  D  W  R :   S  K  I  P  L  G  C  Q  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0181G10.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83596" stop="84051"/>
                    <exon start="84143" stop="84374"/>
                    <exon start="84457" stop="84485"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLRNKFFFFFKKKVEEFELKIKEEEDRRAMELQGGIPLLMQQYKALFKKNLLLALRNKPATFLQLFSSFFFIFLLFCIKLSDESRNADNTFAKELRDPKPLMAPSIPPCEDKFYIKTPCYDFIWSGKHSKTIGDVVKGIMANNPGRPIPANKVLAFNTAQDVDKWLFDNPVRCPAAVHFTIVKGNKISYGIQTNSTDVVKRGVTEDPTFKFQIPLQIAVEREIARNLIGDPKFPWDVSF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="85298" PGL_stop="85981"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85298" e_stop="85464"/>
            <exon e_start="85543" e_stop="85702"/>
            <exon e_start="85793" e_stop="85981"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.540" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.924" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85298" e_stop="85464" e_length="167"/>
          </exon>
          <intron i_serial="1" don_prob="0.540" acc_prob="0.000">
            <gDNA_intron_boundary i_start="85465" i_stop="85542" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85543" e_stop="85702" e_length="160"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.924">
            <gDNA_intron_boundary i_start="85703" i_stop="85792" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="85793" e_stop="85981" e_length="189"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85298" stop="85464"/>
              <exon start="85543" stop="85702"/>
              <exon start="85793" stop="85981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219922" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85298" stop="85464"/>
              <exon start="85543" stop="85702"/>
              <exon start="85793" stop="85855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219778" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATATTCCAATAAACACAGGATTTATTGGTCATTGTTCCCACCAAATCTTCTTACTATAGGTCTTCAGTTACTTGCTAAAGCAACTGAAAGTCCTAAAGATCCAGGTATTAGCTGGAGTACTAGGGCAAAATGTTTACCTAAAGAACCAGACTGTGTAACTACCATG : CATGATGTGTATATACTACTTGTGAAAACATTTTTTTTCTGGCTCGTTCTGGCTATATACTTCGACAACATAATTCCAAATATATCTGGTGTGAGAAAGTCAAAATTATACTTCCTATATCCTGGCTACTGGACTGGAAATGGTGGAAGTAGTGTGAAAG : AGGGAGGAAACTGTAGCATCTGTTCAGGCTCATTGCCACGGCTGGATCCTATTACACCAGATGACGAAGACGTTCTTACAGAAGAAAACACTGTTAAAAAGCAAGCTATGGAAGGTGACAATTCCAACAATGCAGTTCAAATACGCGGTCTTATTAAGACATATCCTGGAAAGAAAACAGGTGGCTGCT</gDNA_template>
            <first_frame> H  I  P  I  N  T  G  F  I  G  H  C  S  H  Q  I  F  L  L  *  V  F  S  Y  L  L  K  Q  L  K  V  L  K  I  Q  V  L  A  G  V  L  G  Q  N  V  Y  L  K  N  Q  T  V  *  L  P  C :   M  M  C  I  Y  Y  L  *  K  H  F  F  S  G  S  F  W  L  Y  T  S  T  T  *  F  Q  I  Y  L  V  *  E  S  Q  N  Y  T  S  Y  I  L  A  T  G  L  E  M  V  E  V  V  *  K  :  R  E  E  T  V  A  S  V  Q  A  H  C  H  G  W  I  L  L  H  Q  M  T  K  T  F  L  Q  K  K  T  L  L  K  S  K  L  W  K  V  T  I  P  T  M  Q  F  K  Y  A  V  L  L  R  H  I  L  E  R  K  Q  V  A  A </first_frame>
            <second_frame>  I  F  Q  *  T  Q  D  L  L  V  I  V  P  T  K  S  S  Y  Y  R  S  S  V  T  C  *  S  N  *  K  S  *  R  S  R  Y  *  L  E  Y  *  G  K  M  F  T  *  R  T  R  L  C  N  Y  H   : A  *  C  V  Y  T  T  C  E  N  I  F  F  L  A  R  S  G  Y  I  L  R  Q  H  N  S  K  Y  I  W  C  E  K  V  K  I  I  L  P  I  S  W  L  L  D  W  K  W  W  K  *  C  E  R :   G  R  K  L  *  H  L  F  R  L  I  A  T  A  G  S  Y  Y  T  R  *  R  R  R  S  Y  R  R  K  H  C  *  K  A  S  Y  G  R  *  Q  F  Q  Q  C  S  S  N  T  R  S  Y  *  D  I  S  W  K  E  N  R  W  L   </second_frame>
            <third_frame>   Y  S  N  K  H  R  I  Y  W  S  L  F  P  P  N  L  L  T  I  G  L  Q  L  L  A  K  A  T  E  S  P  K  D  P  G  I  S  W  S  T  R  A  K  C  L  P  K  E  P  D  C  V  T  T  M  :  H  D  V  Y  I  L  L  V  K  T  F  F  F  W  L  V  L  A  I  Y  F  D  N  I  I  P  N  I  S  G  V  R  K  S  K  L  Y  F  L  Y  P  G  Y  W  T  G  N  G  G  S  S  V  K   : E  G  G  N  C  S  I  C  S  G  S  L  P  R  L  D  P  I  T  P  D  D  E  D  V  L  T  E  E  N  T  V  K  K  Q  A  M  E  G  D  N  S  N  N  A  V  Q  I  R  G  L  I  K  T  Y  P  G  K  K  T  G  G  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0181G10.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85300" stop="85464"/>
                    <exon start="85543" stop="85702"/>
                    <exon start="85793" stop="85980"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSNKHRIYWSLFPPNLLTIGLQLLAKATESPKDPGISWSTRAKCLPKEPDCVTTMHDVYILLVKTFFFWLVLAIYFDNIIPNISGVRKSKLYFLYPGYWTGNGGSSVKEGGNCSICSGSLPRLDPITPDDEDVLTEENTVKKQAMEGDNSNNAVQIRGLIKTYPGKKTGGC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="86460" PGL_stop="88804"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86460" e_stop="86530"/>
            <exon e_start="86918" e_stop="86993"/>
            <exon e_start="87118" e_stop="87207"/>
            <exon e_start="87314" e_stop="87460"/>
            <exon e_start="87554" e_stop="87820"/>
            <exon e_start="87914" e_stop="87994"/>
            <exon e_start="88087" e_stop="88263"/>
            <exon e_start="88351" e_stop="88804"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.390" e_score="0.986"/>
          <exon-intron don_prob="1.000" acc_prob="0.958" e_score="0.947"/>
          <exon-intron don_prob="0.983" acc_prob="0.976" e_score="0.989"/>
          <exon-intron don_prob="0.876" acc_prob="0.935" e_score="0.993"/>
          <exon-intron don_prob="0.998" acc_prob="0.782" e_score="0.993"/>
          <exon-intron don_prob="0.909" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.994" e_score="0.994"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="86460" e_stop="86530" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.390">
            <gDNA_intron_boundary i_start="86531" i_stop="86917" i_length="387"/>
          </intron>
          <exon e_serial="2" e_score="0.947">
            <gDNA_exon_boundary e_start="86918" e_stop="86993" e_length="76"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.958">
            <gDNA_intron_boundary i_start="86994" i_stop="87117" i_length="124"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="87118" e_stop="87207" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.976">
            <gDNA_intron_boundary i_start="87208" i_stop="87313" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="87314" e_stop="87460" e_length="147"/>
          </exon>
          <intron i_serial="4" don_prob="0.876" acc_prob="0.935">
            <gDNA_intron_boundary i_start="87461" i_stop="87553" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="87554" e_stop="87820" e_length="267"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.782">
            <gDNA_intron_boundary i_start="87821" i_stop="87913" i_length="93"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="87914" e_stop="87994" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="0.909" acc_prob="0.959">
            <gDNA_intron_boundary i_start="87995" i_stop="88086" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="0.994">
            <gDNA_exon_boundary e_start="88087" e_stop="88263" e_length="177"/>
          </exon>
          <intron i_serial="7" don_prob="0.986" acc_prob="0.994">
            <gDNA_intron_boundary i_start="88264" i_stop="88350" i_length="87"/>
          </intron>
          <exon e_serial="8" e_score="0.969">
            <gDNA_exon_boundary e_start="88351" e_stop="88804" e_length="454"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86460" stop="86530"/>
              <exon start="86918" stop="86993"/>
              <exon start="87118" stop="87207"/>
              <exon start="87314" stop="87460"/>
              <exon start="87554" stop="87820"/>
              <exon start="87914" stop="87994"/>
              <exon start="88087" stop="88158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86461" stop="86530"/>
              <exon start="86918" stop="86993"/>
              <exon start="87118" stop="87207"/>
              <exon start="87314" stop="87460"/>
              <exon start="87554" stop="87690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87322" stop="87460"/>
              <exon start="87554" stop="87820"/>
              <exon start="87914" stop="87994"/>
              <exon start="88087" stop="88216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87665" stop="87820"/>
              <exon start="87914" stop="87994"/>
              <exon start="88087" stop="88263"/>
              <exon start="88351" stop="88439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87773" stop="87820"/>
              <exon start="87914" stop="87994"/>
              <exon start="88087" stop="88263"/>
              <exon start="88351" stop="88487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88164" stop="88263"/>
              <exon start="88351" stop="88804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547446" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCCAATGGTGCTGGAAAAACTACTACTATAAGTTGTTTGACTGGGATTAATCCTGTTACAGCAGGAGATG : CGTTGGTATATGATCAGTCCATACGAAGCTCTATGGGCATGACAAACGTCGAAGGATGATGGGAGTTTGCCCCCAG : TTTGATATTCTTTGGGATGCATTATCCGGACAAGAGAACCTTCAGATTTTTGCCAACATTAAAGGTCTACCGCCTGCTTCAATAGACACG : GTGGTAGCTCAACTATTATCCCAGTCGAAAATCACCAAGGTGTCAGCCAAGATGAGATCTTGTAGTTACAGTGGAGGAATGAAACGACGTCTTAGTGTTGCTATAGCCCTTATTGGAGATCCAAAGTTGGTTATTTTGGATGAACCG : ACTACTGGTATGGATCCAATTACTCGAAGGCACGTTTGGGACATTATAGAGAAAGCCAAAAAAGGACGTGTCATTATCTTGACAACCCATTCAATGGAAGAAGCTGATGTCTTAAGTGATCGTATTGGTATCATGGCAAAGGGAAGGCTTCGTTGCATTGGAACTTCCATAAGGTTGAAAGCAAAATTTGGTACTGGTTTCATTGCTAATGTGGGCTTAGTTAGTGAATCAACATCTCCTGATGCTGTGAAACACTTCTTCAAAAGT : CAATTGGATGTGGTGCCTAAAGATGAAAATAAGTGCTTCCTTACCTATGTTATTCCTCATGAAAGGGAAAAGATGTTGACG : GAATTCTTTGCTGAGCTTCAAGCTAGACAAAGTGAGTTCGGTGTAAAAGACATCCAGCTAGGTCTTACTACTCTTGAAGAAGTTTTCATGAACATAGCTAAACAGGCAGATGTGGAAACTGCAATAGCTGAAGGAAGATTTAAAACTCTTACATTGAACTCAGGGGACTCTGTTGAA : GTACCTGTGGGAGCACAATTCATTGGAATTCCAGGAACAAAATCTCCACAGAATCCCGGAGGTGTTATGGTGGAAGTATATTGGGAGCCAGATGAAACAGGTAGTCCTTGCATATATGGCATCTCAGAAGAAATGCCAATACCACCTCATATTCAACTAAGAGATCCTCCAACAAACAACTCACCTACAAACCAAGGAATTGTAATCGACCCTTCACAACTCAAAATGCACTTGTCATGACAATATTATTAGGAAATATAGGGACAGAGGTATGTAAACTCAGATACAGTAAGAGATCGTAAGGTGAATAGTAGTCTGATACTATCAGTCTGAGTTTACCATAAGCCACTAGCGCTTCAAAAGGTGAAATTCTAGGGTATTAGTTAATTTGATGAAACATTTTCAATAGGAGCTTTTTAGTCCTTTTGATCGGATTCAAAAGCTTTGCATATTG</gDNA_template>
            <first_frame> A  Q  W  C  W  K  N  Y  Y  Y  K  L  F  D  W  D  *  S  C  Y  S  R  R  C :   V  G  I  *  S  V  H  T  K  L  Y  G  H  D  K  R  R  R  M  M  G  V  C  P  Q  :  F  D  I  L  W  D  A  L  S  G  Q  E  N  L  Q  I  F  A  N  I  K  G  L  P  P  A  S  I  D  T  :  V  V  A  Q  L  L  S  Q  S  K  I  T  K  V  S  A  K  M  R  S  C  S  Y  S  G  G  M  K  R  R  L  S  V  A  I  A  L  I  G  D  P  K  L  V  I  L  D  E  P  :  T  T  G  M  D  P  I  T  R  R  H  V  W  D  I  I  E  K  A  K  K  G  R  V  I  I  L  T  T  H  S  M  E  E  A  D  V  L  S  D  R  I  G  I  M  A  K  G  R  L  R  C  I  G  T  S  I  R  L  K  A  K  F  G  T  G  F  I  A  N  V  G  L  V  S  E  S  T  S  P  D  A  V  K  H  F  F  K  S  :  Q  L  D  V  V  P  K  D  E  N  K  C  F  L  T  Y  V  I  P  H  E  R  E  K  M  L  T  :  E  F  F  A  E  L  Q  A  R  Q  S  E  F  G  V  K  D  I  Q  L  G  L  T  T  L  E  E  V  F  M  N  I  A  K  Q  A  D  V  E  T  A  I  A  E  G  R  F  K  T  L  T  L  N  S  G  D  S  V  E  :  V  P  V  G  A  Q  F  I  G  I  P  G  T  K  S  P  Q  N  P  G  G  V  M  V  E  V  Y  W  E  P  D  E  T  G  S  P  C  I  Y  G  I  S  E  E  M  P  I  P  P  H  I  Q  L  R  D  P  P  T  N  N  S  P  T  N  Q  G  I  V  I  D  P  S  Q  L  K  M  H  L  S  *  Q  Y  Y  *  E  I  *  G  Q  R  Y  V  N  S  D  T  V  R  D  R  K  V  N  S  S  L  I  L  S  V  *  V  Y  H  K  P  L  A  L  Q  K  V  K  F  *  G  I  S  *  F  D  E  T  F  S  I  G  A  F  *  S  F  *  S  D  S  K  A  L  H  I  </first_frame>
            <second_frame>  P  N  G  A  G  K  T  T  T  I  S  C  L  T  G  I  N  P  V  T  A  G  D   : A  L  V  Y  D  Q  S  I  R  S  S  M  G  M  T  N  V  E  G  *  W  E  F  A  P  S :   L  I  F  F  G  M  H  Y  P  D  K  R  T  F  R  F  L  P  T  L  K  V  Y  R  L  L  Q  *  T  R :   W  *  L  N  Y  Y  P  S  R  K  S  P  R  C  Q  P  R  *  D  L  V  V  T  V  E  E  *  N  D  V  L  V  L  L  *  P  L  L  E  I  Q  S  W  L  F  W  M  N  R :   L  L  V  W  I  Q  L  L  E  G  T  F  G  T  L  *  R  K  P  K  K  D  V  S  L  S  *  Q  P  I  Q  W  K  K  L  M  S  *  V  I  V  L  V  S  W  Q  R  E  G  F  V  A  L  E  L  P  *  G  *  K  Q  N  L  V  L  V  S  L  L  M  W  A  *  L  V  N  Q  H  L  L  M  L  *  N  T  S  S  K  V :   N  W  M  W  C  L  K  M  K  I  S  A  S  L  P  M  L  F  L  M  K  G  K  R  C  *  R :   N  S  L  L  S  F  K  L  D  K  V  S  S  V  *  K  T  S  S  *  V  L  L  L  L  K  K  F  S  *  T  *  L  N  R  Q  M  W  K  L  Q  *  L  K  E  D  L  K  L  L  H  *  T  Q  G  T  L  L  K :   Y  L  W  E  H  N  S  L  E  F  Q  E  Q  N  L  H  R  I  P  E  V  L  W  W  K  Y  I  G  S  Q  M  K  Q  V  V  L  A  Y  M  A  S  Q  K  K  C  Q  Y  H  L  I  F  N  *  E  I  L  Q  Q  T  T  H  L  Q  T  K  E  L  *  S  T  L  H  N  S  K  C  T  C  H  D  N  I  I  R  K  Y  R  D  R  G  M  *  T  Q  I  Q  *  E  I  V  R  *  I  V  V  *  Y  Y  Q  S  E  F  T  I  S  H  *  R  F  K  R  *  N  S  R  V  L  V  N  L  M  K  H  F  Q  *  E  L  F  S  P  F  D  R  I  Q  K  L  C  I  L </second_frame>
            <third_frame>   P  M  V  L  E  K  L  L  L  *  V  V  *  L  G  L  I  L  L  Q  Q  E  M  :  R  W  Y  M  I  S  P  Y  E  A  L  W  A  *  Q  T  S  K  D  D  G  S  L  P  P   : V  *  Y  S  L  G  C  I  I  R  T  R  E  P  S  D  F  C  Q  H  *  R  S  T  A  C  F  N  R  H   : G  G  S  S  T  I  I  P  V  E  N  H  Q  G  V  S  Q  D  E  I  L  *  L  Q  W  R  N  E  T  T  S  *  C  C  Y  S  P  Y  W  R  S  K  V  G  Y  F  G  *  T   : D  Y  W  Y  G  S  N  Y  S  K  A  R  L  G  H  Y  R  E  S  Q  K  R  T  C  H  Y  L  D  N  P  F  N  G  R  S  *  C  L  K  *  S  Y  W  Y  H  G  K  G  K  A  S  L  H  W  N  F  H  K  V  E  S  K  I  W  Y  W  F  H  C  *  C  G  L  S  *  *  I  N  I  S  *  C  C  E  T  L  L  Q  K   : S  I  G  C  G  A  *  R  *  K  *  V  L  P  Y  L  C  Y  S  S  *  K  G  K  D  V  D   : G  I  L  C  *  A  S  S  *  T  K  *  V  R  C  K  R  H  P  A  R  S  Y  Y  S  *  R  S  F  H  E  H  S  *  T  G  R  C  G  N  C  N  S  *  R  K  I  *  N  S  Y  I  E  L  R  G  L  C  *   : S  T  C  G  S  T  I  H  W  N  S  R  N  K  I  S  T  E  S  R  R  C  Y  G  G  S  I  L  G  A  R  *  N  R  *  S  L  H  I  W  H  L  R  R  N  A  N  T  T  S  Y  S  T  K  R  S  S  N  K  Q  L  T  Y  K  P  R  N  C  N  R  P  F  T  T  Q  N  A  L  V  M  T  I  L  L  G  N  I  G  T  E  V  C  K  L  R  Y  S  K  R  S  *  G  E  *  *  S  D  T  I  S  L  S  L  P  *  A  T  S  A  S  K  G  E  I  L  G  Y  *  L  I  *  *  N  I  F  N  R  S  F  L  V  L  L  I  G  F  K  S  F  A  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0181G10.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86931" stop="86993"/>
                    <exon start="87118" stop="87207"/>
                    <exon start="87314" stop="87460"/>
                    <exon start="87554" stop="87820"/>
                    <exon start="87914" stop="87994"/>
                    <exon start="88087" stop="88263"/>
                    <exon start="88351" stop="88590"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1062</number_coding_nucleotides>
                  <number_encoded_amino_acids>354</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVHTKLYGHDKRRRMMGVCPQFDILWDALSGQENLQIFANIKGLPPASIDTVVAQLLSQSKITKVSAKMRSCSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIEKAKKGRVIILTTHSMEEADVLSDRIGIMAKGRLRCIGTSIRLKAKFGTGFIANVGLVSESTSPDAVKHFFKSQLDVVPKDENKCFLTYVIPHEREKMLTEFFAELQARQSEFGVKDIQLGLTTLEEVFMNIAKQADVETAIAEGRFKTLTLNSGDSVEVPVGAQFIGIPGTKSPQNPGGVMVEVYWEPDETGSPCIYGISEEMPIPPHIQLRDPPTNNSPTNQGIVIDPSQLKMHLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 164 chains have been computed
$ 
$ memory statistics:
$ 430472 bytes spliced alignments in total
$ 83 spliced alignments have been stored
$ 5186 bytes was the average size of a spliced alignment
$ 23864 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1590 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 184 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 17:25:22
-->
