<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 14:43:26"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0187J06-uM08M/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0187J06-uM08M/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0187J06-uM08M/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344877" ref_strand="+" ref_description="SGN-U344877        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 2e-36, score=149) genbank/nr: retrotransposon(evalue: 5e-50, score=201)">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0187J06-uM08M/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0187J06.1" temp_strand="-" temp_description="C06HBa0187J06.1  AC216649.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0187J06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11781" stop="10881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11481" g_stop="11181" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0187J06.1" gen_strand="-" ref_id="SGN-U344877" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0187J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11481" e_stop="11181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTGCTATAGGCTACAATCAGGAGTATGGGCTTAATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAATCATTCGCCCGGTACTATCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTATATGGGCTCAAGCAAGCCCTCCGTGCTTGGTGCACACGTCTGAATATGTT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0187J06-uM08M/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322792" ref_strand="+" ref_description="SGN-U322792        Tomato 200607 #1 [7 ESTs aligned] genbank/nr: gi|15144516|gb|AAK84483.1| putative copia-like polyprotein [Lycopersicon esculentum](evalue: 2e-16, score=90.1)">
      <seq>cagagtttatgatacgccgaaagcgtaatagaccaattgattccaaatataaaattccttaaagaaggaaggagcaaatgatcaatatggtcatgataatgaggcaagtgctataaaggagcacattgacataacacttcataaaatcttgaaaaaggttcaggtacctgaaataatgaaaaaaattgaagagatctcgataagttatgtcttgttggaatcgatatcaaataaccgtcgacggtatctttgatatgaggtagcgctcaatgatataaattgtgatgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtgaataaatcgcattcattgagtaccccaatgattatgagattacttgacataaatgatgattcagtttgatctcaaaagaaggatgatgagtttcttggtgatgaaactctatcttggtgcaatcagggcactagtgcatcttactaacaatattattccagatatttgttttgcagtaaatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0187J06-uM08M/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0187J06.1" temp_strand="-" temp_description="C06HBa0187J06.1  AC216649.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0187J06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56129" stop="54434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55829" g_stop="54734" g_length="1096"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1099" r_length="1099" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0187J06.1" gen_strand="-" ref_id="SGN-U322792" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>1096</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0187J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55829" e_stop="54734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTCTATGATACGCCGGAAGCGTAATAGACCAATCGATTCCAAATATAAAATTCCTTGAAGAAGGAAGGAGCAAATGATCAATATGGTCATGATAATGAGGCAAGTGCTATAAAAGAGCACATTGACATAACAATTCATAAAATCTTGAAAAAGGTTCAGGTACCTGAAATAATG--AAAAA-TGAAGAGATCTCGATAAGTTATGTCTTGTTGGAATTGATATCAAATAACCGTCGACGGTATCTTCGATATGAGGTAGCGCTCAATAATATAAATTGTGATGAGGATCTTGAATTCAAATATGTCATATAGTGTGAACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACTGTTAGATATCAAATACGATTTGTG-CTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAA-CTTGAATGCATGTAAATGAATAATTTTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCAAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAAAGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAATATATTTGTCTAACAGTGCACGTACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGGCATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGAAGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTTGACCAGATATTTGTTTTGCAGTAAATTTACT</genome_strand>
        <mrna_strand>CAGAGTTTATGATACGCCGAAAGCGTAATAGACCAATTGATTCCAAATATAAAATTCCTTAAAGAAGGAAGGAGCAAATGATCAATATGGTCATGATAATGAGGCAAGTGCTATAAAGGAGCACATTGACATAACACTTCATAAAATCTTGAAAAAGGTTCAGGTACCTGAAATAATGAAAAAAATTGAAGAGATCTCGATAAGTTATGTCTTGTTGGAATCGATATCAAATAACCGTCGACGGTATCTTTGATATGAGGTAGCGCTCAATGATATAAATTGTGATGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGT-AATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGAATAAATCGCATTCATTGAGTACCCCAATGATTATGAGATTACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTATTCCAGATATTTGTTTTGCAGTAAATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0187J06-uM08M/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0187J06-uM08M/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0187J06.1" temp_strand="+" temp_description="C06HBa0187J06.1  AC216649.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0187J06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="97337" stop="98114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97637" g_stop="97813" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0187J06.1" gen_strand="+" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0187J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97637" e_stop="97813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTCCCATACAATGCTTCGAAAGGAGCCATATCAATACTTGAGTGATAGCAATTATTGTATGAAAACTCCACTAAGGGTAAGAATTTATCCCAATGACCCCCAAATTCTATCACACATGCACGAAGCATATCTTCCAACACCTGAATTGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0187J06-uM08M/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0187J06-uM08M/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0187J06.1" temp_strand="+" temp_description="C06HBa0187J06.1  AC216649.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0187J06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98818" stop="100130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99118" g_stop="99830" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0187J06.1" gen_strand="+" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0187J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99118" e_stop="99830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCATCATTTCCAATATAATTCTCAAGTGCTCCTCATGTTTCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGTGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCATCATGGGCATTTGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTCTGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGAACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGCTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAGCTTCCATCCTTCTTCTTCACAAACAAAACAGGAGCACCCCAAGAGGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCCCTTAACTCAGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0187J06-uM08M/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0187J06-uM08M/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0187J06.1" temp_strand="-" temp_description="C06HBa0187J06.1  AC216649.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0187J06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="107434" stop="99426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107134" g_stop="106962" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106961" i_stop="100218" i_length="6744">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100217" g_stop="99733" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="658" r_length="485" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0187J06.1" gen_strand="-" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0187J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="107134" e_stop="106962"/>
          <exon e_start="100217" e_stop="99733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCCAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAATTGTGGATTTCAGCCTTACAGGTAGCGGCTACGGTAAAATCCTTTCAAGAAGTGGTAGACTTCGTGATAGAGGTGGAAGGAGTGAAGCCAGATGACTTCACCATGGCATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTGGAGGACAGGGTTCAGGAGGTTACTCAGTCCGACCAATTTAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGACTCCAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCTAAAACAGAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGCCGAGGTAATAGTGGCCACTAAAACGGCCGGGGTGACGGACAAATGGGAACTACTGCAGCACAATGATATACCGTGGTTTCACAGTATAATTAATACTTTTTCCTTAAGTTTAGTGTGTCCAAAAGCCCTTTTTGTGCTAATTTTGATATAAGTTTCTCTTTGTTTTTGAGGGAAATCTGTCCAAAGCTGAATGCGGAGATTTTGAGCGAAAAATGGAGAAGAGACCACCTACGGAGCTTATGACGGTCCGTCGTGCACGACGGACCCTGTTTCTAAGGGTCTCTCAAAATTTTCTAAGTGTCCTACGAAGGACCGTCATACCCACGACGGTCCGTCCTGCACGACCGTCATGATAGTCAGAGACTTCCCTGATAAGGGTCTCCCAACATTTTCTAAGTGTCCTACCACAGACTCTTACGACGGACCGTCGTATCGACGACGGTCCGTCCTGCATGATCGTCATGATGGTCAAAGACCCCTCTAATAAGGGTCTCCCAACATTTTCTAATTGTTCTACGATGGACTCTTACGAAGGACTGTTGTACCAATGACGGTCCGTCCTGCTTGACCGTCATGATGGTTAGAGACCCCTCCTTCAGGGTTCTTTCTATATACATAGACTAAGTACAACACGACGGACCTCATGACGGTCCTTCATATCAACGACGAGCCGTCATCTAGCCCGTCATGTGATACGGTTTCACTATCACTAACACACTATTTTATATGTTTTATGTTATATGGGCTTGCCTGTCTTGTTTGACACTACTCGTACTAATAGTGATCCTTTGCAGGTACTATCTACTATGGCACCCAAGCAAGACCGAGCCTACGCACGCGGGCGATCCAAGTCTGTTGCCCCATCTGCACGCTTGATCATCGGCTCTGATGATGAGCGGGACCCTGAATATGTGCCCCCAGGCACATCCACACCTTCCCGTACTGCACGTGCCCCCAGAGCCACACCCAAGACGGTGGCGCCCGGCGTAGTCACTGCCTCCCAGTCTGATGAGGAGTGCACACTGACCGGCACACCCTCTGGGTCAGCCACAAATGAGGAAGGAGCGTCTGGCTCCTTAGGAGTATCCTGGTCTGAGGAATCTTCAGGCTCTTCTGAGGTTCCCGCACCCGCCACTGCTGCAGCGTCGGCCTCGTTTGATGAGGCTGACAGTTCAGACTCTACATCCGGCGCACCAACCCAGGTCCCCACCCCAGCCTCTGACCAGCCAAACCGGTGGTGCGTCGAAGGCCAGTTTCAAGTTTACTCCGACGCCAAATTCCTGACTGATAAAGGAGTAATGACTCGGACACTCACCTTGGAGTGGAGGGTACTTACAGGGAGTCTCCCATCGATGCTGGAGATCCACAACCTATTCACCAAGCATCGCCTAGAGTGGACAGCCCGTCCGGTTGGACGATACAGCGAGGAAGTGGTTCGAGAGTTCTACGCATCCTTCGTAGCGACTTTCTGATCACAAATCGATAGGCGGGCTGCTCCCGCTAAACAGGACCCACTAGAGCAGGTTCGAGTCCGGGGCGTGCAGGTTGGCATTTCCCTGCCAGCTATCCACCGGTTCCTACACGGTGAGAGTGCAGATGCTACGCGGACTCCCCACACTACCGAGTTTGACTACCGCTGGCAGATAGTGAAGGATGACTAGTTCTTGCGCGAGCAGGCACTAAGAGATACCACCAAGAGGTGGATGGCCCTGCACCTATCAGTCGACGGAGAGGATGCAGATTGGGTCACTAAGCCGAAGGGGGCCATCAAGAAGGCCAACCTCACGTTCGTCGCGAAGTTCTTGTGGCTGCTCGTCCGTCACTGCCTTTCCCCCACAGCTGCTGATAACATCGTCACTTGGGATCGAGCAGTGTTGATAGTGGCGATGATAGACGAATTTGAGGTCGACTTCGCATGGCTTCTCCAGGCAGTCATGCACGAGAGGGCATTCAAGGTCACTACTACCTACCCCTTCCCGTGTATGATTTTTTCCCTTTGCAAGACCGCAGGTGTGCCCATATGGCACATAGATCAGTTGAAGACCCCGCAGGGCACCGTTGACGTCGGCCTCATCAGAGACGAGGCCAATGAGTTGGCCCCACGTCGAGGGCCCCGTCTAGAGCTGCCACCAATTGCTGATGATCTTGCGGATACGGTGGCCCAGGCCCGCACCGCTACACAGGCGTCCACTGACCCTACCCCGGTCGAGTCTATCCCAGGTAGTAGCCCAGCCCCGAGCTCCTCTCGCACAGCCCCTCTAACGTTACTGGCCCCGCTTGCTAGGGTCCAAAAACTGGAGGAATAAATGGCCACTCTTCTGCATCATATACAGCCGTGGATGCAGAAGTCTATTACTGAGTCTGAAGCGCGTATGGAAAGGGAGATGCAGCGGAAGATTGGTGAGCTTCACCAGCGCCTAGATGCATTTGAGTTGAGAGTGTTAGCCCGCCCAGCCCCTCCAGTAGATGTGTCGACTCTTCAGGCTGTAGTCGACAGTCTTCGTGCAGACATCGACACGATCCTAGAGGCGAGAGTGCCGGAGCCTGTCGAGCCTGTTGAGGACACTGTATTGGCGGCCCTGTTTGCTACTTCAGAAATTCACCCACCTTCCCCTCGAGAGAGTGCCAAGAGGCGTAGGGGTCGATCAGAGGATGAGGCGCGAGCAAGGAAGAAGGAGCGCCGAGAGATGGAGGCCGCGAGGAGAGCCTCACTTGCTGAGGCGGAGGCACACCAAATCAGAGCATCGCAGATAGCGGCCGGGGCGTCTAGCTCCTGCACTGTAGAGACAGCAGGAGGCACTACTGATGGTGCGGTTGTTGCTGAGGACATCACTGAGGGTGTCCATATTGCTGAGGACACCACTGAGGGTGTCCAGATTGCTGAGGACACCACTGAGGGTGTCCAGATTGCAGAGGATGTGGGTTCTGGGAAACCGGACCCACCAGCTTGCTGATCGACGGCGCTATGCGCCACAGGTTTGCTTCACCTACCCCTCTAATCATTAGATTTTTTTATGCATTGGGGACAATTGCATGCTTTTTTTTTGGGGGTGGGGTAAATAGAAAGTGAGTGTTAGGGTGAAGTCTGAGTAGCCCAACTCACTATCCTCTTTTAGGGTTTTCTTGCCTGTGTTCTTTTTCCCCAAAAGACTGATTACTTTTTCTGTTGAACCGGCACGTTATATCTTTTGTACATAGTTTAACTCTGAAGCATGATGGCTAAAATGATATCCCGATAAAACTGGAAAATGTTGCATGACTAGGCGTAGTAACTGATAATTGTGTGGATCTAAACATGAAATAGAGTTACACCATTGCATTACCCTAAATCTTCAAATAAAACTAGGTGTCTGATAATCTGGTATAGTTATGAGATGTCAAGTGAGTGTGAGGAAAGTTGAATAGTCCACTATTGGTACTGAGCTAGAACTTGCCTGGTTAGTCCTGCTAAAAGTAAGTTGTAACAGACAATTAGGAAAGGATCATAGGCCCTTATTCAATATAGCCCATTTCTAGCCTAAATAAAAGAAATCAAATGAAAGTTATCCTTCTTTGATCCAAATAATTTGAGCTTAAAATTAGACCTTTCTTTTTCACCCCAACTAATCTTTTCTGGGAACAATATGTTGGCCCTGGTTCCTCCTTGGACATGTGCACCTCAGCTTATGCCAAAAGCATAAGTTGAGGGTGGATAATGCATAAACAACCTTCGTTATGGCCCTGACCCGACTTTGGGTATTGTGTACCTTGACTCGTGGCAAAGCCATGAGTTGAGGGTGGCTGTTTTGAGGAATGCTATGGAAAGTGGGGTTGAAAGAACAAAGAGAGAGAAAGAACAAAAGTAAAGTGACTCAAGAACTCGTTGAAAGAAAAGGAAAGAAAAAGAGAAATATTCAAGAATTACAAACAAGAAAAGAAAAGAGTTACTTACACAAATGAAGAAAGAAGGGAAACAGCAAGGTGAAAGAATAGGAGAAAATGGGCGAGATAAAGTGATAGAAAGTAGAAGGTTTAGCCGATATGTCAAGAAGGGCAAAAAGTCACTAAAGTATACCTAAATATACCCTACCTGACTCTGAGCCTACGTTACAAGCTAAAAAAGTCCTATCGTGATCCTAAGGGTTGTATAGCGAACTTAAGGCAGTGAAAATAAGGGCAAGCTTATGGCAATAGGTATGAATGAGTGTGACTTTGTTCTGAGAGCGAGTGTTGAAATGTAATCCTTATACTCAAACTGAAATCATTGTGTGAAAAATGAGGATTTTGTTCTAAAGTGAGGACACTAGTTGCAATACCGGAATTGTTAGCACCTCGGTGAGAAATTGAAGAGGATAGGTGCTAGTGCATGGTGAGTCTGTGTGATGTTCGAATCCCACAAAATTCAATCCTAATAGTGATAGCATGTATAGATTTGATGAGATTAATCGGGATTGATAGCCAAATGATTACAAAGGATAAAACATGAATACTATTGTACAAAGATTGTGTAGTGAGTCATAGTGCGTCGCTTGAGGACAAACAACGGATTTAAGTTGAGGGTGTTGATATACTGTGGTTTCACGGTATAATTAATACTTTTTCCTTAAGTTTAGTGTGTCCGAAAGCCTTTTTGTGCTAATTTTGATATAAGTTTCTCTTTGTTTTCCAGGAAATCTGTCCAAAGCTGAATGCGGAGATTTTGAGCGAAAAATGCAGAAGAGACCACCTACGGAGCTTATGACGGTCCGTCGTGCCTGTGACGGTCCGTAGGTGGCAGCATAGAGAAGCTGCTGAAGAAAGATGGGGAAGTCTGACCAAGTGTGGGATTACGAAGCTTGTGACGGTCCGTCATGGCTATGACGGTCCGTCCTGCAGGTTCGTCGTGAAGATCAGAGAAGTGATCCCAGTACCCAGATTCCAAGAGTTGAAGTATTTTGAAACGAGACCCTCGACGGACCGTTGTGCCTATGACGGTCCGTCACACTTGTCGTCGAGGGGAATGAAGAAAGCAGCAGAAGAACTTGCACCAAGTATGGGACGACGGAGTCCACAACGGTCCGTCATGACCACGACGGTCCGTCACGTGGTCCGTCGACCCAGCCGCGTTTTGGCAGATTTCCAGTAATTAGAATCCTTGTTTAATTAGGTTTTTATTTTTTTTATAAATAGTTCAAAAAACTTCATTTTTTAGGTTAGACTCTGTGAGATAAAACATCATATTATTAGACTTTGTGTTTTGAGTGTTTGATTTTTAGAGATTCTTACAAGTGATTTTTGGTGATTAATCAAGCAAATTTTCGGACATTATTCTTTCTCATTGAAGTAAGTACATGAATTCTTGTTTAACATATTTGAATATTGTGTTTATGGCTATGAGGAACTAAACTCCATAACTAGGGTTGTGGGAACCATAGTTATGTATGTATTAATAATTCTTTCGCTTAGAAGTCTTTTTAACGGATGATCAACGTTAGAACTCGCCTTAATGCTACTTGCCGGACCAAGGAGGTAGATAATAGGAAAAGAATTATTAACATAGATTTAGTGTATACTATTTAATAGGCTAGTATTGATTGGTACGAGGTAATAACTTAGTCAAATATCGAATACGATGCTTAATATGAGGTAAAGATAAGGGTTAGGAAAGCAACACACGCAGCCGGACCAAGGTGCGGAGTGAGATTTTCTAGATGCCGGACCAAGGATTTAGAAATACATAACTTATCACTTTGCATGCAAGATACTAGGAAAGAATTCTTATAGTTAGAATTATCAAGTTATGACCCTGTGGGGAACACGTAAACCCTAGTTACTTTAATTAATTGATTAAAACCCAACATTAAAAGCTGTTAAGTGTATCTTTCAAGTTCGTTAGTTACTTTTACTCATTAGGAAATACAAACCCCCCTTTTTATGCTTTTACTTTCTAAGGAAGTCGTCAACCAAACAATAGTAATAGCGAGTTGAAGTTAAGTCTAGACTATTTTCCTCGTGGGAACGATCCCAACCTCACTAGTTGGGTTATTTACTTGACGCAACCGCTTTACTTCTCATTTGAGAAGTAAGTTTGAGCGTATCACGCAACATGGTAGGGGCAACCGGCAAACAGGTGATAGGTCCCATTGTAACGCTTTCCCTGGGCGGTCGGAAGCGGAGACATCAGATGCTGTTATCACAGGTAATCTTTTGGTTTGTGATTGTATGGCTTCTGTATTATTTGACCCTGGCTCCACATTTTCATATGTATCTTCTTCATTTGCTACTGGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTGCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTAACGTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATTTTAGAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCAAAGCCTAGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTTCGTATCATCTCCCTTCTTCGTGCTAAGAAAATGGTTAGTAAGGGTTGTTTAGCGTTCTTGGCACATCTCAGGGATGATACTACCCAAGTACCTCCAATTGAGTCGGTTTCGATAGTCCGCGAGTTTTTAGATGTGTTTCCTGTAGACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTTTGCATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCTTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCCTCTTGGGGTGCTCCTGTTTTGTTT</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0187J06-uM08M/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335936" ref_strand="+" ref_description="SGN-U335936        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-62, score=215)">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0187J06-uM08M/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0187J06.1" temp_strand="-" temp_description="C06HBa0187J06.1  AC216649.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0187J06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100710" stop="99450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100410" g_stop="99750" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0187J06.1" gen_strand="-" ref_id="SGN-U335936" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0187J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100410" e_stop="99750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACCCTGGCTCCACATTTTCATATGTATCTTCTTCATTTGCTACTGGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTGCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTAACGTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATTTTAGAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCAAAGCCTAGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTTCGTATCATCTCCCTTCTTCGTGCTAAGAAAATGGTTAGTAAGGGTTGTTTAGCGTTCTTGGCACATCTCAGGGATGATACTACCCAAGTACCTCCAATTGAGTCGGTTTCGATAGTCCGCGAGTTTTTAGATGTGTTTCCTGTAGACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTTTGCATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCTTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCCTCTTGGG</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0187J06-uM08M/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0187J06-uM08M/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0187J06.1" temp_strand="+" temp_description="C06HBa0187J06.1  AC216649.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0187J06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99810" stop="100740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100110" g_stop="100440" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0187J06.1" gen_strand="+" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0187J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100110" e_stop="100440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCTAGGCTTTGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTAAAATAACCAAGTCTACATGAGTATTGCTCCCCACAAACGTTACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGCAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGCAAATGAAGAAGATACATATGAAAATGTGGAGCCAGGGTCAAATAATACAGAAGCCATACAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0187J06-uM08M/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314029" ref_strand="+" ref_description="SGN-U314029        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>tgccaaaacgcggctgggtcgacggaccacgcgacagaacgtcgtggtcatgacggaccgtcatggactctgtcgccccatacttgggtgcaatttcttctgctgctttcttcattcccctcgacggcaagtgtaacggaccgtcataggtacgacggtctgtcgagggtcttcgtttcaaaatacttcaactcttggaatctgggtactgggatcacttctctgatcttcacgacgaacctgcaggacggaccgtcatagccatgacggaccgtcacaagcttcgtaatcccacacttggtcagacttccccatcttccttcagcagcttctctacgctgccacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtctcttctgcattttttgctcaaaatctccgctttcagctttagacagatttcctgcaaaacaaagagaaacttatatcaaaattagcacaaaaagggctttcggacacactaaacttaaggcaaaagtattaattataccgtgaaaccacggtatatcaatcccctagttctacgtgtcagttcgtgatacccgatcccctaattctacgtgtcggttcatgacacccgctccactaatcttattctgtcaatcgatcaagccttcttttataccaaggcatatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0187J06-uM08M/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0187J06.1" temp_strand="+" temp_description="C06HBa0187J06.1  AC216649.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0187J06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="101214" stop="109381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101514" g_stop="102063" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102064" i_stop="108952" i_length="6889">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108953" g_stop="109081" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="681" r_length="128" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0187J06.1" gen_strand="+" ref_id="SGN-U314029" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0187J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U314029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101514" e_stop="102063"/>
          <exon e_start="108953" e_stop="109081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCAAAACGCGGCTGGGTCGACGGACCACGTGACGGACCGTCGTGGTCATGACGGACCGTTGTGGACTCCGTCGTCCCATACTTG-GTGCAAGTTCTTCTGCTGCTTTCTTCATTCCCCTCGACGACAAGTGTGACGGACCGTCATAGGCACAACGGTCCGTCGAGGGTC-TCGTTTCAAAATACTTCAACTCTTGGAATCTGGGTACTGGGATCACTTCTCTGATCTTCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTTCTTCAGCAGCTTCTCTATGCTGCCACCTACGGACCGTCACAGGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGGAAAACAAAGAGAAACTTATATCAAAATTAGCACAAAAA-GGCTTTCGGACACACTAAACTTAAGGAAAAAGTATTAATTATACCGTGAAACCACAGTATATCAACACCCTCAACTTAAATCCGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATTCATGTTTTATCCTTTGTAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATACATGCTATCACTATTAGGATTGAATTTTGTGGGATTCGAACATCACACAGACTCACCATGCACTAGCACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCCGGTATTGCAACTAGTGTCCTCACTTTAGAACAAAATCCTCATTTTTCACACAATGATTTCAGTTTGAGTATAAGGATTACATTTCAACACTCGCTCTCAGAACAAAGTCACACTCATTCATACCTATTGCCATAAGCTTGCCCTTATTTTCACTGCCTTAAGTTCGCTATACAACCCTTAGGATCACGATAGGACTTTTTTAGCTTGTAACGTAGGCTCAGAGTCAGGTAGGGTATATTTAGGTATACTTTAGTGACTTTTTGCCCTTCTTGACATATCGGCTAAACCTTCTACTTTCTATCACTTTATCTCGCCCATTTTCTCCTATTCTTTCACCTTGCTGTTTCCCTTCTTTCTTCATTTGTGTAAGTAACTCTTTTCTTTTCTTGTTTGTAATTCTTGAATATTTCTCTTTTTCTTTCCTTTTCTTTCAACGAGTTCTTGAGTCACTTTACTTTTGTTCTTTCTCTCTCTTTGTTCTTTCAACCCCACTTTCCATAGCATTCCTCAAAACAGCCACCCTCAACTCATGGCTTTGCCACGAGTCAAGGTACACAATACCCAAAGTCGGGTCAGGGCCATAACGAAGGTTGTTTATGCATTATCCACCCTCAACTTATGCTTTTGGCATAAGCTGAGGTGCACATGTCCAAGGAGGAACCAGGGCCAACATATTGTTCCCAGAAAAGATTAGTTGGGGTGAAAAAGAAAGGTCTAATTTTAAGCTCAAATTATTTGGATCAAAGAAGGATAACTTTCATTTGATTTCTTTTATTTAGGCTAGAAATGGGCTATATTGAATAAGGGCCTATGATCCTTTCCTAATTGTCTGTTACAACTTACTTTTAGCAGGACTAACCAGGCAAGTTCTAGCTCAGTACCAATAGTGGACTATTCAACTTTCCTCACACTCACTTGACATCTCATAACTATACCAGATTATCAGACACCTAGTTTTATTTGAAGATTTAGGGTAATGCAATGGTGTAACTCTATTTCATGTTTAGATCCACACAATTATCAGTTACTACGCCTAGTCATGCAACATTTTCCAGTTTTATCGGGATATCATTTTAGCCATCATGCTTCAGAGTTAAACTATGTACAAAAGATATAACGTGCCGGTTCAACAGAAAAAGTAATCAGTCTTTTGGGGAAAAAGAACACAGGCAAGAAAACCCTAAAAGAGGATAGTGAGTTGGGCTACTCAGACTTCACCCTAACACTCACTTTCTATTTACCCCACCCCCAAAAAAAAAGCATGCAATTGTCCCCAATGCATAAAAAAATCTAATGATTAGAGGGGTAGGTGAAGCAAACCTGTGGCGCATAGCGCCGTCGATCAGCAAGCTGGTGGGTCCGGTTTCCCAGAACCCACATCCTCTGCAATCTGGACACCCTCAGTGGTGTCCTCAGCAATCTGGACACCCTCAGTGGTGTCCTCAGCAATATGGACACCCTCAGTGATGTCCTCAGCAACAACCGCACCATCAGTAGTGCCTCCTGCTGTCTCTACAGTGCAGGAGCTAGACGCCCCGGCCGCTATCTGCGATGCTCTGATTTGGTGTGCCTCCGCCTCAGCAAGTGAGGCTCTCCTCGCGGCCTCCATCTCTCGGCGCTCCTTCTTCCTTGCTCGCGCCTCATCCTCTGATCGACCCCTACGCCTCTTGGCACTCTCTCGAGGGGAAGGTGGGTGAATTTCTGAAGTAGCAAACAGGGCCGCCAATACAGTGTCCTCAACAGGCTCGACAGGCTCCGGCACTCTCGCCTCTAGGATCGTGTCGATGTCTGCACGAAGACTGTCGACTACAGCCTGAAGAGTCGACACATCTACTGGAGGGGCTGGGCGGGCTAACACTCTCAACTCAAATGCATCTAGGCGCTGGTGAAGCTCACCAATCTTCCGCTGCATCTCCCTTTCCATACGCGCTTCAGACTCAGTAATAGACTTCTGCATCCACGGCTGTATATGATGCAGAAGAGTGGCCATTTATTCCTCCAGTTTTTGGACCCTAGCAAGCGGGGCCAGTAACGTTAGAGGGGCTGTGCGAGAGGAGCTCGGGGCTGGGCTACTACCTGGGATAGACTCGACCGGGGTAGGGTCAGTGGACGCCTGTGTAGCGGTGCGGGCCTGGGCCACCGTATCCGCAAGATCATCAGCAATTGGTGGCAGCTCTAGACGGGGCCCTCGACGTGGGGCCAACTCATTGGCCTCGTCTCTGATGAGGCCGACGTCAACGGTGCCCTGCGGGGTCTTCAACTGATCTATGTGCCATATGGGCACACCTGCGGTCTTGCAAAGGGAAAAAATCATACACGGGAAGGGGTAGGTAGTAGTGACCTTGAATGCCCTCTCGTGCATGACTGCCTGGAGAAGCCATGCGAAGTCGACCTCAAATTCGTCTATCATCGCCACTATCAACACTGCTCGATCCCAAGTGACGATGTTATCAGCAGCTGTGGGGGAAAGGCAGTGACGGACGAGCAGCCACAAGAACTTCGCGACGAACGTGAGGTTGGCCTTCTTGATGGCCCCCTTCGGCTTAGTGACCCAATCTGCATCCTCTCCGTCGACTGATAGGTGCAGGGCCATCCACCTCTTGGTGGTATCTCTTAGTGCCTGCTCGCGCAAGAACTAGTCATCCTTCACTATCTGCCAGCGGTAGTCAAACTCGGTAGTGTGGGGAGTCCGCGTAGCATCTGCACTCTCACCGTGTAGGAACCGGTGGATAGCTGGCAGGGAAATGCCAACCTGCACGCCCCGGACTCGAACCTGCTCTAGTGGGTCCTGTTTAGCGGGAGCAGCCCGCCTATCGATTTGTGATCAGAAAGTCGCTACGAAGGATGCGTAGAACTCTCGAACCACTTCCTCGCTGTATCGTCCAACCGGACGGGCTGTCCACTCTAGGCGATGCTTGGTGAATAGGTTGTGGATCTCCAGCATCGATGGGAGACTCCCTGTAAGTACCCTCCACTCCAAGGTGAGTGTCCGAGTCATTACTCCTTTATCAGTCAGGAATTTGGCGTCGGAGTAAACTTGAAACTGGCCTTCGACGCACCACCGGTTTGGCTGGTCAGAGGCTGGGGTGGGGACCTGGGTTGGTGCGCCGGATGTAGAGTCTGAACTGTCAGCCTCATCAAACGAGGCCGACGCTGCAGCAGTGGCGGGTGCGGGAACCTCAGAAGAGCCTGAAGATTCCTCAGACCAGGATACTCCTAAGGAGCCAGACGCTCCTTCCTCATTTGTGGCTGACCCAGAGGGTGTGCCGGTCAGTGTGCACTCCTCATCAGACTGGGAGGCAGTGACTACGCCGGGCGCCACCGTCTTGGGTGTGGCTCTGGGGGCACGTGCAGTACGGGAAGGTGTGGATGTGCCTGGGGGCACATATTCAGGGTCCCGCTCATCATCAGAGCCGATGATCAAGCGTGCAGATGGGGCAACAGACTTGGATCGCCCGCGTGCGTAGGCTCGGTCTTGCTTGGGTGCCATAGTAGATAGTACCTGCAAAGGATCACTATTAGTACGAGTAGTGTCAAACAAGACAGGCAAGCCCATATAACATAAAACATATAAAATAGTGTGTTAGTGATAGTGAAACCGTATCACATGACGGGCTAGATGACGGCTCGTCGTTGATATGAAGGACCGTCATGAGGTCCGTCGTGTTGTACTTAGTCTATGTATATAGAAAGAACCCTGAAGGAGGGGTCTCTAACCATCATGACGGTCAAGCAGGACGGACCGTCATTGGTACAACAGTCCTTCGTAAGAGTCCATCGTAGAACAATTAGAAAATGTTGGGAGACCCTTATTAGAGGGGTCTTTGACCATCATGACGATCATGCAGGACGGACCGTCGTCGATACGACGGTCCGTCGTAAGAGTCTGTGGTAGGACACTTAGAAAATGTTGGGAGACCCTTATCAGGGAAGTCTCTGACTATCATGACGGTCGTGCAGGACGGACCGTCGTGGGTATGACGGTCCTTCGTAGGACACTTAGAAAATTTTGAGAGACCCTTAGAAACAGGGTCCGTCGTGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTCCATTTTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCCTCAAAAACAAAGAGAAACTTATATCAAAATTAGCACAAAAAGGGCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATTATACTGTGAAACCACGGTATATCATTGTGCTGCAGTAGTTCCCATTTGTCCGTCACCCCGGCCGTTTTAGTGGCCACTATTACCTCGGCCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTTAGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTAAATTGGTCGGACTGAGTAACCTCCTGAACCCTGTCCTCCAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGCCATGGTGAAGTCATCTGGCTTCACTCCTTCCACCTCTATCACGAAGTCTACCACTTCTTGAAAGGATTTTACCGTAGCCGCTACCTGTAAGGCTGAAATCCACAATTCTGACCTCAACCCCTTCACAAAACGGCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTGGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATTCCTCAAAGTCCGGGGAATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTTCCTTGATACTGATAAGTCTCAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACACTCAACTAGAAAATCGTAGGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATTATTTGTCATTATAGGCCCTGTAGTCAGACGAGGAAACGTGCCTATTTCCAATAAGGCATCCATGCGGGGAGCCACATTAGCTGCATGTTGTACCTCCGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGAAAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCAATTCATCATTCTGCACTTGTTCATTCTCCCCATCCTTACCTTCTCTTACCACTTCCTCAGTTTGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGGCGTCCTCCCACGACCTCTTCCACGGCCTCTTGTCACTACTCCTCTTCGAGCTACAGCCCCAGTGGCTGGCTCAGACGCTTGTTGTCTTGCCGATGTTGATGTTAGTGCAGTCGTTGCTCTAGTTCTAACCATCTTCGAAATAGAGTGAAGATAGTCAGATACCAATTTATATCACCTAGATACCAATTGGATCCAAGTAATAGCACGAAAGAAAGAAAGAATGGGATTTTCCTAAAGTCTTATAGCCTCTCAAAGAAAAGTAAAGGCGTCCCCCTACCGTTCCTTAAGACTCTACTAGACTCGTTCTTGTGTGATGAGACCAATGAACCTAATGCTCTGATACCAAGTTTGTCACGACCCAAAACGCATCGTGAGTGGCACCCACATTTATCCTCCTATGTGAGCGAACCAACCAATCTAAACCCCAACGTTTTAACCATAATAAACAGAATACAATGCGGAAGACTTAAAACTCATTAACGAAATCAATAAATAACTTCTAAAACTCAATACTTATTATTCCCAAAATCTGGAAGTCATCATCACAAGAACATCTATCCTTAAATTACTAATCTAAGAGTATCTAAGAAGCTAAAATAAGTAAAAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACATGAAGAGGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAAATCCGGTGTAATGAAGACTGGCTAGAGTTGCGTTTAAGTTGAAGGCGACGGCACGTTTGCTTCACTCCACAAATAATCAAGAAAACAAATAAAAGTAGGGGTCAGTACAAGGCATAAGTACTGAGTAGGTATCATCGGCCAACTCAAAATAGAAAACAGTATATATCAGATAATAACATAAAATCAATCATATTCCTCAACAGGTGAAAGCAACAAGTTCACAAATCATGTCTAACCACATCAAACACACCTATGAGAACTCAAGTATCCACACCATGCTCATTTGTGATATAGGTTCTTTTCATTCAAATTTATTAACATAATTTCAAGATTCATTATCTTTATTCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTTGGTTCGTGACACACGATCCCCTAATTTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGCTCCACTAATCTCATTCTATTAATTCATCAATCCTTCTTTTATACCAAGGAATCATCAA</genome_strand>
        <mrna_strand>TGCCAAAACGCGGCTGGGTCGACGGACCACGCGACAGAACGTCGTGGTCATGACGGACCGTCATGGACTCTGTCGCCCCATACTTGGGTGCAATTTCTTCTGCTGCTTTCTTCATTCCCCTCGACGGCAAGTGTAACGGACCGTCATAGGTACGACGGTCTGTCGAGGGTCTTCGTTTCAAAATACTTCAACTCTTGGAATCTGGGTACTGGGATCACTTCTCTGATCTTCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTGCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTTTTGCTCAAAATCTCCGCTTTCAGCTTTAGACAGATTTCCTGCAAAACAAAGAGAAACTTATATCAAAATTAGCACAAAAAGGGCTTTCGGACACACTAAACTTAAGGCAAAAGTATTAATTATACCGTGAAACCACGGTATATCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCCTAGTTCTACGTGTCAGTTCGTGATACCCGATCCCCTAATTCTACGTGTCGGTTCATGACACCCGCTCCACTAATCTTATTCTGTCAATCGATCAAGCCTTCTTTTATACCAAGGCAT-ATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0187J06-uM08M/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334737" ref_strand="+" ref_description="SGN-U334737        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>cgagggtctttgttctaatacacttcaactcttggaatttgggtactgggatcacttctctgaacttcacgacgaacctgcaggacggaccgtcagatccacgacggaccgtcacaagcttcgtaatcccacacttagtcagacttccctatcttccttcagcagctgcactacgcttccacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtttcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaacaaagagtaacttatataaaaattagcacaaaaaggcttttggacacactaagcttaaggaaaaagtattaataataccgtgaaaccacggtatatcaacaccctcaacttaaattagttgtttgtcctcaagcgacgcactatgactcactacacaatctttgtacaatagtatccatgttttatcctttgcaatcatttggctatcaatcccgattaatctcatcaaatctatgcatgctatcactattaggtttgaattttgtgggatcagaatatgacacagacttaccatgcactaacacctatcctcttcaatttctcaccgaggtgctaacaattctagtattgcaactagtgtcctcactataagacaaaatcctcctttttcacacagtgattttagtttgagtataaggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0187J06-uM08M/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0187J06.1" temp_strand="+" temp_description="C06HBa0187J06.1  AC216649.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0187J06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="101376" stop="102689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101676" g_stop="102389" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0187J06.1" gen_strand="+" ref_id="SGN-U334737" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0187J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101676" e_stop="102389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGGTC-TCGTTTCAAAATACTTCAACTCTTGGAATCTGGGTACTGGGATCACTTCTCTGATCTTCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTTCTTCAGCAGCTTCTCTATGCTGCCACCTACGGACCGTCACAGGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTT-TTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGGAAAACAAAGAGAAACTTATATCAAAATTAGCACAAAAAGGCTTTCGGACACACTAAACTTAAGGAAAAAGTATTAATTATACCGTGAAACCACAGTATATCAACACCCTCAACTTAAATCCGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATTCATGTTTTATCCTTTGTAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATACATGCTATCACTATTAGGATTGAATTTTGTGGGATTCGAACATCACACAGACTCACCATGCACTAGCACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCCGGTATTGCAACTAGTGTCCTCACTTTAGAACAAAATCCTCATTTTTCACACAATGATTTCAGTTTGAGTATAAGGATTAC</genome_strand>
        <mrna_strand>CGAGGGTCTTTGTTCTAATACACTTCAACTCTTGGAATTTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCAGATCCACGACGGACCGTCACAAGCTTCGTAATCCCACACTTAGTCAGACTTCCCTATCTTCCTTCAGCAGCTGCACTACGCTTCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTTTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGTAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAGCTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTAGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGTTTGAATTTTGTGGGATCAGAATATGACACAGACTTACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTAGTATTGCAACTAGTGTCCTCACTATAAGACAAAATCCTCCTTTTTCACACAGTGATTTTAGTTTGAGTATAAGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0187J06-uM08M/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0187J06-uM08M/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0187J06.1" temp_strand="-" temp_description="C06HBa0187J06.1  AC216649.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0187J06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="108061" stop="106908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107761" g_stop="107208" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0187J06.1" gen_strand="-" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0187J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107761" e_stop="107208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACAAACTGAGGAAGTGGTAAGAGAAGGTAAGGATGGGGAGAATGAACAAGTGCAGAATGATGAATTGCCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTTTCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCGGAGGTACAACATGCAGCTAATGTGGCTCCCCGCATGGATGCCTTATTGGAAATAGGCACGTTTCCTCGTCTGACTACAGGGCCTATAATGACAAATAATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTACGATTTTCTAGTTGAGTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGAGACTTATCAGTATCAAGGAAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0187J06-uM08M/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339766" ref_strand="+" ref_description="SGN-U339766        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 1e-06, score=50.4) genbank/nr: gi|47824956|gb|AAT38730.1| putative reverse transcriptase [Solanum demissum] (evalue: 4e-61, score=237)">
      <seq>tttacttcatagtcaaattcttgtaacagtaatacccaaccaatcaacctcggttttgcatccttctttgccatcaaatatctcaatgttgaatggtcagtatgcactataactctagtacctagcaaataggagcaaaattttttgaaaggaaagactaatgtaaggagttcttgctcagtcactgtgtagttcttgtgagcttcatttagggctttactagcatagtaaatggggtgaagattttgttctttatttgtcccaatactacaccaagagcaaccccactagcatcgcacatcacctcaaatggactattccaatccagagaaataatgataggtgtagacaccaatttttcttttagatcgtcaaatgctttaagacacgattcatcaaaacaaaatttacaatctttctccagcagtttgcacaacggatgtgcaatctttgatgaatcttcggtaaaaacctacatgcccaagaaagcttatcacaccttttacagagataggtgggggaagtctctctattacctcgactttaactcgatcaacctctatgcacttttctgaaatgcgatgacccaaaacaataccttctttcaccatgaaatggcatttttcccaatttagtactaaattacagtcttcacatctcttaaggacctcaggtaaattgttcaaacaccgctcgaatgaatcaccaaccgcagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0187J06-uM08M/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0187J06.1" temp_strand="-" temp_description="C06HBa0187J06.1  AC216649.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0187J06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="116314" stop="114996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116015" g_stop="115296" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="719" r_length="719" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0187J06.1" gen_strand="-" ref_id="SGN-U339766" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0187J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116015" e_stop="115296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTTCAAAGTCAAATTCTTGTAGCAGTAGTACCCAACGAATCAACCTCGGTTTCTCATCCTTCTTTGCCATCAAATATCTCAATGTTGAATGGTCAGTATGTACTATAATTATAGTACCTAGCAAATAAGAGCAAAATTTTTCAAAAGCAAAGACTACTTCAAGGAGTTCTTTCTCAGTCACTGTGTAGTTCTTCTGAGCTTCATTTAGGGTTTTACTAGCATAGTAAATGGGGTGAAGGATTTTGTTCTTTTTTTGTCCCAATACTACACCAAGAGCAACCCCACTAGCATCGCACATCACCTCAAATGGACTATTCCAATATGGAGAAATAATGATAGGTGCAGACACCAATTTCACTTTTAGATCGCTGAATGCTTTAAGACAGGATTCATCAAAATAAAATTTACAATCTTTCTCCAGCAGTTTGCACAACGGATGTGCAATCTTTGATGAATCTCCGGTAAAAACCTGCATGCCCAAGAAAGCTTCTCACACCTTTTACAGAGATAGGTGGGGGAAGTCTCTCTATTACCTCGACTTTAGCTCTATCAACCTCTATGCCCTTTTCTGAATTGCGATGACCCAAAACAATACCTTTTTTCACCATGAAATGGCACTTTTCCCAATTTAGTACTAAATTGCAGTCTTCACATCTCTTAAGGACCTCAGATAAATATTCCAAACACCGCTCGAATGAATCACCAACCACTAAAAA</genome_strand>
        <mrna_strand>TTTACTTCATAGTCAAATTCTTGTAACAGTAATACCCAACCAATCAACCTCGGTTTTGCATCCTTCTTTGCCATCAAATATCTCAATGTTGAATGGTCAGTATGCACTATAACTCTAGTACCTAGCAAATAGGAGCAAAATTTTTTGAAAGGAAAGACTAATGTAAGGAGTTCTTGCTCAGTCACTGTGTAGTTCTTGTGAGCTTCATTTAGGGCTTTACTAGCATAGTAAATGGGGTGAA-GATTTTGTTCTTTATTTGTCCCAATACTACACCAAGAGCAACCCCACTAGCATCGCACATCACCTCAAATGGACTATTCCAATCCAGAGAAATAATGATAGGTGTAGACACCAATTTTTCTTTTAGATCGTCAAATGCTTTAAGACACGATTCATCAAAACAAAATTTACAATCTTTCTCCAGCAGTTTGCACAACGGATGTGCAATCTTTGATGAATCTTCGGTAAAAACCTACATGCCCAAGAAAGCTTATCACACCTTTTACAGAGATAGGTGGGGGAAGTCTCTCTATTACCTCGACTTTAACTCGATCAACCTCTATGCACTTTTCTGAAATGCGATGACCCAAAACAATACCTTCTTTCACCATGAAATGGCATTTTTCCCAATTTAGTACTAAATTACAGTCTTCACATCTCTTAAGGACCTCAGGTAAATTGTTCAAACACCGCTCGAATGAATCACCAACCGCAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0187J06-uM08M/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341053" ref_strand="+" ref_description="SGN-U341053        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824956|gb|AAT38730.1| putative reverse transcriptase [Solanum demissum] (evalue: 1e-35, score=88.6)">
      <seq>acttcgaaggtgtttctccctgtatcagacttcctagtactccaaactttgttattccgggagattttcactaatttttaagcgatctcagcataagggcattctccataagatccaccttctataatgtccaacacttctttgttactatcatcctgtccctgatagaactatttcttccgtgactcatcatctatacagtgatttggaacacttctcaagaatgaggtgatctatcccaagaactactaactgactctactggtagtgccacaaaattatttactctgtctttgtggtttagtttcttcgagattggatagtagagtgccaagaaaacatctcttaattggttccaagtgaagattgagttgcatggaagctcagtgaaccatataggagcctctcccttcagtgagagaggaaacactgtgagccctattacatctagatccatgtcaggcctccccacactacatttacacactgcccttaccttagctatttgggcatgtggatcctcaggcggtagccctgaaaacaaacctctagcagtgagcatttgcatcaggctactagttaccataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0187J06-uM08M/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0187J06.1" temp_strand="-" temp_description="C06HBa0187J06.1  AC216649.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0187J06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="121727" stop="120538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121427" g_stop="120838" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0187J06.1" gen_strand="-" ref_id="SGN-U341053" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0187J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121427" e_stop="120838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTGAAGGTGTTTCTCCCTGTATCAGACTTCCTAGTACTCCAAGCTTTGTTATTCTGGGAGATTTTCTCTAATTTTTTAGCAATCTCAGCATAAGGACACTCCCCATAAGATCCACCTGCTATAGTGTCCAACACCGCTTTATTGTTATCATCCTGTCCCCGATAGAAGTATTACTTCAGTGACTCATCATCTATACGGTGATTTGGAACACTTCTCAAGAATGAGGTGAATCTATCCCAAGAACTACTAACTGACTCTCCTGGTAGTGCCACAAAGTTGTTCACTCTGTCTTTATGGTTTAGTTTCTTCGAGAACGGATAGTAGCTTGCTAAGAAGACATCTCTTAATTGGTTCCAAGTGAATATTGAGTTGTATGGGATCTCAGTGAACCATATAGCAGCCTCTCCCGTTAGTGAGAGAGGAAACACTCTGAGCCCTATTACATCTAGATCCAAATCAGGCCTCCCCACACAACTTTTACACACTGCCCTTACCTTAGCTATATGGGCATGTGGATCCTCAAAAGGTAGCCCTGAAAACAAACCTCTGGCAGTGAGCATTTGCATAAGGCTACTAGTTACCACAAA</genome_strand>
        <mrna_strand>ACTTCGAAGGTGTTTCTCCCTGTATCAGACTTCCTAGTACTCCAAACTTTGTTATTCCGGGAGATTTTCACTAATTTTTAAGCGATCTCAGCATAAGGGCATTCTCCATAAGATCCACCTTCTATAATGTCCAACACTTCTTTGTTACTATCATCCTGTCCCTGATAGAACTATTTCTTCCGTGACTCATCATCTATACAGTGATTTGGAACACTTCTCAAGAATGAGGTG-ATCTATCCCAAGAACTACTAACTGACTCTACTGGTAGTGCCACAAAATTATTTACTCTGTCTTTGTGGTTTAGTTTCTTCGAGATTGGATAGTAGAGTGCCAAGAAAACATCTCTTAATTGGTTCCAAGTGAAGATTGAGTTGCATGGAAGCTCAGTGAACCATATAGGAGCCTCTCCCTTCAGTGAGAGAGGAAACACTGTGAGCCCTATTACATCTAGATCCATGTCAGGCCTCCCCACACTACATTTACACACTGCCCTTACCTTAGCTATTTGGGCATGTGGATCCTCAGGCGGTAGCCCTGAAAACAAACCTCTAGCAGTGAGCATTTGCATCAGGCTACTAGTTACCATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>12</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="11481" PGL_stop="11181"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11481" e_stop="11181"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="11481" e_stop="11181" e_length="301"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11481" stop="11181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344877" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTGGTTGCTATAGGCTACAATCAGGAGTATGGGCTTAATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAATCATTCGCCCGGTACTATCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTATATGGGCTCAAGCAAGCCCTCCGTGCTTGGTGCACACGTCTGAATATGTT</gDNA_template>
            <first_frame> V  W  L  L  *  A  T  I  R  S  M  G  L  I  T  P  R  H  S  V  L  L  F  G  R  K  S  F  A  R  Y  Y  H  S  P  C  A  T  I  G  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  T  *  R  N  H  R  A  M  L  I  P  A  S  L  N  M  F  A  N  S  R  S  L  Y  M  G  S  S  K  P  S  V  L  G  A  H  V  *  I  C  </first_frame>
            <second_frame>  F  G  C  Y  R  L  Q  S  G  V  W  A  *  L  L  R  D  I  Q  S  C  Y  S  A  G  N  H  S  P  G  T  I  T  R  R  A  Q  Q  L  A  H  Q  S  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  L  H  D  A  T  T  G  L  C  *  S  P  L  P  S  T  C  L  Q  T  P  E  V  S  I  W  A  Q  A  S  P  P  C  L  V  H  T  S  E  Y  V </second_frame>
            <third_frame>   L  V  A  I  G  Y  N  Q  E  Y  G  L  N  Y  S  E  T  F  S  P  V  I  R  Q  E  I  I  R  P  V  L  S  L  A  V  R  N  N  W  L  I  N  Q  L  D  V  S  N  A  F  L  H  G  M  L  D  E  T  I  Y  M  T  Q  P  P  G  Y  V  D  P  R  F  P  Q  H  V  C  K  L  Q  K  S  L  Y  G  L  K  Q  A  L  R  A  W  C  T  R  L  N  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0187J06.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11479" stop="11183"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVAIGYNQEYGLNYSETFSPVIRQEIIRPVLSLAVRNNWLINQLDVSNAFLHGMLDETIYMTQPPGYVDPRFPQHVCKLQKSLYGLKQALRAWCTRLNM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="55829" PGL_stop="54734"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55829" e_stop="54734"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="55829" e_stop="54734" e_length="1096"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55829" stop="54734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322792" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAGTCTATGATACGCCGGAAGCGTAATAGACCAATCGATTCCAAATATAAAATTCCTTGAAGAAGGAAGGAGCAAATGATCAATATGGTCATGATAATGAGGCAAGTGCTATAAAAGAGCACATTGACATAACAATTCATAAAATCTTGAAAAAGGTTCAGGTACCTGAAATAATGAAAAATGAAGAGATCTCGATAAGTTATGTCTTGTTGGAATTGATATCAAATAACCGTCGACGGTATCTTCGATATGAGGTAGCGCTCAATAATATAAATTGTGATGAGGATCTTGAATTCAAATATGTCATATAGTGTGAACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACTGTTAGATATCAAATACGATTTGTGCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAACTTGAATGCATGTAAATGAATAATTTTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCAAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAAAGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAATATATTTGTCTAACAGTGCACGTACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGGCATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGAAGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTTGACCAGATATTTGTTTTGCAGTAAATTTACT</gDNA_template>
            <first_frame> Q  S  L  *  Y  A  G  S  V  I  D  Q  S  I  P  N  I  K  F  L  E  E  G  R  S  K  *  S  I  W  S  *  *  *  G  K  C  Y  K  R  A  H  *  H  N  N  S  *  N  L  E  K  G  S  G  T  *  N  N  E  K  *  R  D  L  D  K  L  C  L  V  G  I  D  I  K  *  P  S  T  V  S  S  I  *  G  S  A  Q  *  Y  K  L  *  *  G  S  *  I  Q  I  C  H  I  V  *  T  D  K  W  L  A  K  *  N  A  Q  F  K  Y  I  L  F  H  L  E  K  *  H  F  G  L  V  V  H  K  S  R  Y  N  V  S  G  V  Q  I  N  Y  Y  A  I  V  *  L  L  D  I  K  Y  D  L  C  L  G  H  K  G  L  S  Q  K  S  *  H  *  W  R  C  F  L  L  W  W  M  K  *  G  L  F  *  S  G  N  I  *  K  L  E  C  M  *  M  N  N  F  N  V  *  L  D  N  E  G  Y  M  K  I  L  E  T  I  K  V  S  E  A  Y  K  S  L  K  E  T  F  P  I  K  L  Q  E  S  L  Y  G  L  K  *  S  R  K  K  K  G  T  K  E  *  P  *  L  S  L  Y  F  Y  E  K  V  L  V  R  Q  N  F  V  L  T  Y  R  L  L  I  *  Q  I  I  Y  L  S  N  S  A  R  T  L  K  N  F  D  A  I  L  C  G  Y  I  A  F  I  E  Y  P  N  D  Y  E  I  T  W  H  K  *  *  F  S  L  I  S  K  E  G  *  R  V  S  W  *  *  N  S  I  L  V  Q  S  G  H  *  C  I  L  L  T  I  F  D  Q  I  F  V  L  Q  *  I  Y  </first_frame>
            <second_frame>  R  V  Y  D  T  P  E  A  *  *  T  N  R  F  Q  I  *  N  S  L  K  K  E  G  A  N  D  Q  Y  G  H  D  N  E  A  S  A  I  K  E  H  I  D  I  T  I  H  K  I  L  K  K  V  Q  V  P  E  I  M  K  N  E  E  I  S  I  S  Y  V  L  L  E  L  I  S  N  N  R  R  R  Y  L  R  Y  E  V  A  L  N  N  I  N  C  D  E  D  L  E  F  K  Y  V  I  *  C  E  Q  I  N  G  W  P  S  K  M  H  N  S  S  I  F  C  F  T  *  K  S  D  I  L  D  W  *  S  I  N  Q  G  I  M  S  V  G  Y  K  *  I  I  M  R  *  Y  N  C  *  I  S  N  T  I  C  A  W  G  I  K  V  Y  R  K  N  P  D  I  S  G  D  V  F  S  F  G  G  *  N  E  V  C  F  D  L  A  T  Y  E  N  L  N  A  C  K  *  I  I  L  M  S  S  *  T  M  K  V  I  *  K  S  L  K  Q  S  R  C  L  K  H  I  R  V  *  K  K  L  F  Q  *  S  F  K  N  P  Y  M  D  *  N  S  Q  G  R  K  K  V  Q  K  N  D  P  N  C  P  C  I  F  M  K  R  S  W  *  D  K  I  L  S  *  P  T  D  C  *  F  D  K  *  Y  I  C  L  T  V  H  V  H  *  K  I  L  M  Q  F  Y  V  D  I  S  H  S  L  S  T  P  M  I  M  R  S  L  G  I  N  D  D  S  V  *  S  Q  K  K  D  E  E  F  L  G  D  E  T  L  S  W  C  N  Q  G  T  S  A  S  Y  *  Q  Y  L  T  R  Y  L  F  C  S  K  F  T </second_frame>
            <third_frame>   E  S  M  I  R  R  K  R  N  R  P  I  D  S  K  Y  K  I  P  *  R  R  K  E  Q  M  I  N  M  V  M  I  M  R  Q  V  L  *  K  S  T  L  T  *  Q  F  I  K  S  *  K  R  F  R  Y  L  K  *  *  K  M  K  R  S  R  *  V  M  S  C  W  N  *  Y  Q  I  T  V  D  G  I  F  D  M  R  *  R  S  I  I  *  I  V  M  R  I  L  N  S  N  M  S  Y  S  V  N  R  *  M  V  G  Q  V  K  C  T  I  Q  V  Y  F  V  S  L  R  K  V  T  F  W  T  G  S  P  *  I  K  V  *  C  Q  W  G  T  N  K  L  L  C  D  S  I  T  V  R  Y  Q  I  R  F  V  L  G  A  *  R  F  I  A  K  I  L  T  L  V  E  M  F  S  P  L  V  D  E  M  R  F  V  L  I  W  Q  H  M  K  T  *  M  H  V  N  E  *  F  *  C  L  A  R  Q  *  R  L  Y  E  N  P  *  N  N  Q  G  V  *  S  I  *  E  F  E  R  N  F  S  N  K  A  S  R  I  L  I  W  I  E  I  V  K  E  E  K  R  Y  K  R  M  T  L  I  V  L  V  F  L  *  K  G  L  G  K  T  K  F  C  L  D  L  Q  I  V  N  L  T  N  N  I  F  V  *  Q  C  T  Y  T  E  K  F  *  C  N  F  M  W  I  Y  R  I  H  *  V  P  Q  *  L  *  D  H  L  A  *  M  M  I  Q  F  D  L  K  R  R  M  K  S  F  L  V  M  K  L  Y  L  G  A  I  R  A  L  V  H  L  T  N  N  I  *  P  D  I  C  F  A  V  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0187J06.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55777" stop="55517"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSLKKEGANDQYGHDNEASAIKEHIDITIHKILKKVQVPEIMKNEEISISYVLLELISNNRRRYLRYEVALNNINCDEDLEFKYVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="97637" PGL_stop="97813"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97637" e_stop="97813"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="97637" e_stop="97813" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97637" stop="97813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTCCCATACAATGCTTCGAAAGGAGCCATATCAATACTTGAGTGATAGCAATTATTGTATGAAAACTCCACTAAGGGTAAGAATTTATCCCAATGACCCCCAAATTCTATCACACATGCACGAAGCATATCTTCCAACACCTGAATTGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  K  G  A  I  S  I  L  E  *  *  Q  L  L  Y  E  N  S  T  K  G  K  N  L  S  Q  *  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  S  H  T  M  L  R  K  E  P  Y  Q  Y  L  S  D  S  N  Y  C  M  K  T  P  L  R  V  R  I  Y  P  N  D  P  Q  I  L  S  H  M  H  E  A  Y  L  P  T  P  E  L  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  P  I  Q  C  F  E  R  S  H  I  N  T  *  V  I  A  I  I  V  *  K  L  H  *  G  *  E  F  I  P  M  T  P  K  F  Y  H  T  C  T  K  H  I  F  Q  H  L  N  C  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0187J06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="99118" PGL_stop="99830"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99118" e_stop="99830"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="99118" e_stop="99830" e_length="713"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99118" stop="99830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCATCATTTCCAATATAATTCTCAAGTGCTCCTCATGTTTCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGTGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCATCATGGGCATTTGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTCTGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGAACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGCTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAGCTTCCATCCTTCTTCTTCACAAACAAAACAGGAGCACCCCAAGAGGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCCCTTAACTCAGCGG</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  I  A  S  *  T  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  P  I  L  R  N  H  M  P  Q  E  G  H  C  I  *  P  K  L  T  L  G  E  F  G  I  K  L  F  L  P  H  H  F  Q  Y  N  S  Q  V  L  L  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  K  V  I  Q  I  W  L  K  N  P  V  H  Q  A  H  E  S  I  M  G  I  C  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  L  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  R  T  L  *  L  I  E  Q  V  I  N  A  R  N  G  I  L  A  L  N  S  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  A  S  I  L  L  L  H  K  Q  N  R  S  T  P  R  G  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  G  L  *  L  P  *  L  S   </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  K  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  I  I  S  N  I  I  L  K  C  S  S  C  F  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  *  S  R  Y  G  L  K  I  P  F  I  K  L  M  K  A  S  W  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  *  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  E  P  C  N  *  S  N  K  S  S  M  R  G  M  G  Y  L  L  L  I  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  E  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  A  </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  N  S  *  L  N  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  P  H  P  *  K  P  H  A  P  R  R  T  L  H  L  A  K  T  H  T  W  R  I  W  H  K  A  F  S  P  S  S  F  P  I  *  F  S  S  A  P  H  V  S  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  Q  S  D  P  D  M  A  *  K  S  R  S  S  S  S  *  K  H  H  G  H  L  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  S  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  N  L  V  T  D  R  T  S  H  Q  C  E  E  W  D  T  C  S  *  *  L  P  C  S  T  A  G  S  L  C  T  S  E  S  F  H  P  S  S  S  Q  T  K  Q  E  H  P  K  R  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  P  L  T  P  L  T  Q  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0187J06.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99382" stop="99621"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHKVIQIWLKNPVHQAHESIMGICKTKRHHYKFVMPIPGLKSSLWHIRCPYFQLMITGSQVNLREDTRTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="107134" PGL_stop="99733"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107134" e_stop="106962"/>
            <exon e_start="100217" e_stop="99733"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.919"/>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="107134" e_stop="106962" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="106961" i_stop="100218" i_length="6744"/>
          </intron>
          <exon e_serial="2" e_score="0.909">
            <gDNA_exon_boundary e_start="100217" e_stop="99733" e_length="485"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107134" stop="106962"/>
              <exon start="100217" stop="99733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCCAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAATTGTGGATTTCAGCCTTACAGGTAGCGGCTACGGTAAAATCCTTTCAAG : AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCAAAGCCTAGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTTCGTATCATCTCCCTTCTTCGTGCTAAGAAAATGGTTAGTAAGGGTTGTTTAGCGTTCTTGGCACATCTCAGGGATGATACTACCCAAGTACCTCCAATTGAGTCGGTTTCGATAGTCCGCGAGTTTTTAGATGTGTTTCCTGTAGACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTTTGCATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCTTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCCTCTTGGGGTGCTCCTGTTTTGTTT</gDNA_template>
            <first_frame> A  R  *  D  V  G  Y  C  I  *  G  *  V  S  C  I  I  Q  V  C  H  P  T  L  F  Q  S  T  R  A  D  S  P  F  C  E  G  V  E  V  R  I  V  D  F  S  L  T  G  S  G  Y  G  K  I  L  S  R :   N  G  *  L  R  C  N  S  G  Y  D  L  A  F  S  K  F  C  N  L  G  L  *  C  *  N  C  D  V  S  K  A  *  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  S  Y  H  L  P  S  S  C  *  E  N  G  *  *  G  L  F  S  V  L  G  T  S  Q  G  *  Y  Y  P  S  T  S  N  *  V  G  F  D  S  P  R  V  F  R  C  V  S  C  R  P  S  W  Y  A  T  G  *  R  Y  *  L  L  H  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  *  V  K  G  V  K  G  P  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  L  L  G  C  S  C  F  V  </first_frame>
            <second_frame>  Q  G  R  M  S  V  T  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  W  I  S  A  L  Q  V  A  A  T  V  K  S  F  Q   : E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  R  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  L  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  P  I  E  S  V  S  I  V  R  E  F  L  D  V  F  P  V  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  L  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  S  W  G  A  P  V  L  F </second_frame>
            <third_frame>   K  V  G  C  R  L  L  H  M  R  L  S  F  V  H  Y  P  G  M  P  P  N  F  V  S  V  H  K  S  G  F  A  V  L  *  R  G  *  G  Q  N  C  G  F  Q  P  Y  R  *  R  L  R  *  N  P  F  K  :  K  W  L  T  S  M  *  F  W  V  *  L  G  F  L  Q  I  L  Q  S  W  I  V  M  L  K  L  *  R  *  Q  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  F  V  S  S  P  F  F  V  L  R  K  W  L  V  R  V  V  *  R  S  W  H  I  S  G  M  I  L  P  K  Y  L  Q  L  S  R  F  R  *  S  A  S  F  *  M  C  F  L  *  T  F  L  V  C  H  R  I  E  I  L  T  F  A  L  I  L  N  R  V  L  A  P  F  L  Y  P  F  I  E  W  L  P  L  S  *  G  S  *  R  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  P  L  G  V  L  L  F  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0187J06.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107133" stop="106962"/>
                    <exon start="100217" stop="99733"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVTAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSELWISALQVAATVKSFQEMVDFDVILGMTWLSPNFAILDCNAKTVTLAKPRTDPLVWEGDYTSNPVRIISLLRAKKMVSKGCLAFLAHLRDDTTQVPPIESVSIVREFLDVFPVDLPGMPPDRDIDFCIDLEPGTRPISIPLYRMAPAELRELKAQLQELLSKGFIRPSASSWGAPVLF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="100410" e_stop="99750"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="100410" e_stop="99750" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100410" stop="99750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335936" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGACCCTGGCTCCACATTTTCATATGTATCTTCTTCATTTGCTACTGGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTGCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTAACGTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATTTTAGAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCAAAGCCTAGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTTCGTATCATCTCCCTTCTTCGTGCTAAGAAAATGGTTAGTAAGGGTTGTTTAGCGTTCTTGGCACATCTCAGGGATGATACTACCCAAGTACCTCCAATTGAGTCGGTTTCGATAGTCCGCGAGTTTTTAGATGTGTTTCCTGTAGACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTTTGCATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCTTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCCTCTTGGG</gDNA_template>
            <first_frame> F  D  P  G  S  T  F  S  Y  V  S  S  S  F  A  T  G  L  N  L  H  C  E  L  L  D  M  P  I  R  V  S  T  A  V  G  E  S  V  I  V  E  K  V  Y  R  S  C  L  V  T  F  V  G  S  N  T  H  V  D  L  V  I  L  E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  R  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  L  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  P  I  E  S  V  S  I  V  R  E  F  L  D  V  F  P  V  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  L  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  S  W  </first_frame>
            <second_frame>  L  T  L  A  P  H  F  H  M  Y  L  L  H  L  L  L  V  L  I  Y  I  V  N  C  L  T  C  L  F  V  F  L  L  R  W  V  S  L  *  *  L  K  R  C  I  G  L  V  L  *  R  L  W  G  A  I  L  M  *  T  W  L  F  *  K  W  L  T  S  M  *  F  W  V  *  L  G  F  L  Q  I  L  Q  S  W  I  V  M  L  K  L  *  R  *  Q  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  F  V  S  S  P  F  F  V  L  R  K  W  L  V  R  V  V  *  R  S  W  H  I  S  G  M  I  L  P  K  Y  L  Q  L  S  R  F  R  *  S  A  S  F  *  M  C  F  L  *  T  F  L  V  C  H  R  I  E  I  L  T  F  A  L  I  L  N  R  V  L  A  P  F  L  Y  P  F  I  E  W  L  P  L  S  *  G  S  *  R  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  P  L  G </second_frame>
            <third_frame>   *  P  W  L  H  I  F  I  C  I  F  F  I  C  Y  W  S  *  F  T  L  *  I  A  *  H  A  Y  S  C  F  Y  C  G  G  *  V  C  D  S  *  K  G  V  *  V  L  S  C  N  V  C  G  E  Q  Y  S  C  R  L  G  Y  F  R  N  G  *  L  R  C  N  S  G  Y  D  L  A  F  S  K  F  C  N  L  G  L  *  C  *  N  C  D  V  S  K  A  *  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  S  Y  H  L  P  S  S  C  *  E  N  G  *  *  G  L  F  S  V  L  G  T  S  Q  G  *  Y  Y  P  S  T  S  N  *  V  G  F  D  S  P  R  V  F  R  C  V  S  C  R  P  S  W  Y  A  T  G  *  R  Y  *  L  L  H  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  *  V  K  G  V  K  G  P  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0187J06.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100410" stop="99751"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDPGSTFSYVSSSFATGLNLHCELLDMPIRVSTAVGESVIVEKVYRSCLVTFVGSNTHVDLVILEMVDFDVILGMTWLSPNFAILDCNAKTVTLAKPRTDPLVWEGDYTSNPVRIISLLRAKKMVSKGCLAFLAHLRDDTTQVPPIESVSIVREFLDVFPVDLPGMPPDRDIDFCIDLEPGTRPISIPLYRMAPAELRELKAQLQELLSKGFIRPSASSW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="100110" PGL_stop="100440"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100110" e_stop="100440"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="100110" e_stop="100440" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100110" stop="100440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCTGTCCTAGGCTTTGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTAAAATAACCAAGTCTACATGAGTATTGCTCCCCACAAACGTTACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGCAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGCAAATGAAGAAGATACATATGAAAATGTGGAGCCAGGGTCAAATAATACAGAAGCCATACAATCACAAACCAA</gDNA_template>
            <first_frame> D  L  S  *  A  L  L  T  S  Q  F  *  H  Y  N  P  R  L  Q  N  L  E  K  A  K  S  Y  P  E  L  H  R  S  Q  P  F  L  K  *  P  S  L  H  E  Y  C  S  P  Q  T  L  Q  D  K  T  Y  T  P  F  Q  L  S  Q  T  H  P  P  Q  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  *  D  Q  *  Q  M  K  K  I  H  M  K  M  W  S  Q  G  Q  I  I  Q  K  P  Y  N  H  K  P  </first_frame>
            <second_frame>  I  C  P  R  L  C  *  R  H  S  F  S  I  T  I  Q  D  C  K  I  W  R  K  P  S  H  T  Q  N  Y  I  E  V  N  H  F  *  N  N  Q  V  Y  M  S  I  A  P  H  K  R  Y  K  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  F  T  M  *  I  K  T  S  S  K  *  R  R  Y  I  *  K  C  G  A  R  V  K  *  Y  R  S  H  T  I  T  N  Q </second_frame>
            <third_frame>   S  V  L  G  F  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  N  V  T  R  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  A  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  P  V  A  N  E  E  D  T  Y  E  N  V  E  P  G  S  N  N  T  E  A  I  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0187J06.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100241" stop="100438"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPTNVTRQDLYTFSTITDSPTAVETRIGMSSNSQCKLRPVANEEDTYENVEPGSNNTEAIQSQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="101514" PGL_stop="109081"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101514" e_stop="102063"/>
            <exon e_start="108953" e_stop="109081"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.949"/>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="101514" e_stop="102063" e_length="550"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="102064" i_stop="108952" i_length="6889"/>
          </intron>
          <exon e_serial="2" e_score="0.907">
            <gDNA_exon_boundary e_start="108953" e_stop="109081" e_length="129"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101514" stop="102063"/>
              <exon start="108953" stop="109081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314029" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCCAAAACGCGGCTGGGTCGACGGACCACGTGACGGACCGTCGTGGTCATGACGGACCGTTGTGGACTCCGTCGTCCCATACTTGGTGCAAGTTCTTCTGCTGCTTTCTTCATTCCCCTCGACGACAAGTGTGACGGACCGTCATAGGCACAACGGTCCGTCGAGGGTCTCGTTTCAAAATACTTCAACTCTTGGAATCTGGGTACTGGGATCACTTCTCTGATCTTCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTTCTTCAGCAGCTTCTCTATGCTGCCACCTACGGACCGTCACAGGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGGAAAACAAAGAGAAACTTATATCAAAATTAGCACAAAAAGGCTTTCGGACACACTAAACTTAAGGAAAAAGTATTAATTATACCGTGAAACCACAGTATATCA : ATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGCTCCACTAATCTCATTCTATTAATTCATCAATCCTTCTTTTATACCAAGGAATCATCAA</gDNA_template>
            <first_frame> C  Q  N  A  A  G  S  T  D  H  V  T  D  R  R  G  H  D  G  P  L  W  T  P  S  S  H  T  W  C  K  F  F  C  C  F  L  H  S  P  R  R  Q  V  *  R  T  V  I  G  T  T  V  R  R  G  S  R  F  K  I  L  Q  L  L  E  S  G  Y  W  D  H  F  S  D  L  H  D  E  P  A  G  R  T  V  I  A  M  T  D  R  H  K  L  R  N  P  T  L  G  Q  T  S  P  S  F  F  S  S  F  S  M  L  P  P  T  D  R  H  R  H  D  G  P  S  *  A  P  *  V  V  S  S  A  F  F  A  Q  N  L  R  I  Q  L  W  T  D  F  L  E  N  K  E  K  L  I  S  K  L  A  Q  K  G  F  R  T  H  *  T  *  G  K  S  I  N  Y  T  V  K  P  Q  Y  I   : N  P  L  I  L  R  V  G  S  *  H  P  I  P  *  F  Y  V  S  V  R  D  T  R  S  T  N  L  I  L  L  I  H  Q  S  F  F  Y  T  K  E  S  S  </first_frame>
            <second_frame>  A  K  T  R  L  G  R  R  T  T  *  R  T  V  V  V  M  T  D  R  C  G  L  R  R  P  I  L  G  A  S  S  S  A  A  F  F  I  P  L  D  D  K  C  D  G  P  S  *  A  Q  R  S  V  E  G  L  V  S  K  Y  F  N  S  W  N  L  G  T  G  I  T  S  L  I  F  T  T  N  L  Q  D  G  P  S  *  P  *  R  T  V  T  S  F  V  I  P  H  L  V  R  L  P  H  L  S  S  A  A  S  L  C  C  H  L  R  T  V  T  G  T  T  D  R  H  K  L  R  R  W  S  L  L  H  F  S  L  K  I  S  A  F  S  F  G  Q  I  S  W  K  T  K  R  N  L  Y  Q  N  *  H  K  K  A  F  G  H  T  K  L  K  E  K  V  L  I  I  P  *  N  H  S  I  S  :  I  P  *  F  Y  V  S  V  R  D  T  R  S  P  N  S  T  C  R  F  V  T  P  A  P  L  I  S  F  Y  *  F  I  N  P  S  F  I  P  R  N  H  Q </second_frame>
            <third_frame>   P  K  R  G  W  V  D  G  P  R  D  G  P  S  W  S  *  R  T  V  V  D  S  V  V  P  Y  L  V  Q  V  L  L  L  L  S  S  F  P  S  T  T  S  V  T  D  R  H  R  H  N  G  P  S  R  V  S  F  Q  N  T  S  T  L  G  I  W  V  L  G  S  L  L  *  S  S  R  R  T  C  R  T  D  R  H  S  H  D  G  P  S  Q  A  S  *  S  H  T  W  S  D  F  P  I  F  L  Q  Q  L  L  Y  A  A  T  Y  G  P  S  Q  A  R  R  T  V  I  S  S  V  G  G  L  F  C  I  F  R  S  K  S  P  H  S  A  L  D  R  F  P  G  K  Q  R  E  T  Y  I  K  I  S  T  K  R  L  S  D  T  L  N  L  R  K  K  Y  *  L  Y  R  E  T  T  V  Y  Q :   S  P  N  S  T  C  R  F  V  T  P  D  P  L  I  L  R  V  G  S  *  H  P  L  H  *  S  H  S  I  N  S  S  I  L  L  L  Y  Q  G  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0187J06.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101649" stop="101891"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTVIGTTVRRGSRFKILQLLESGYWDHFSDLHDEPAGRTVIAMTDRHKLRNPTLGQTSPSFFSSFSMLPPTDRHRHDGPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0187J06.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101801" stop="102037"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHTWSDFPIFLQQLLYAATYGPSQARRTVISSVGGLFCIFRSKSPHSALDRFPGKQRETYIKISTKRLSDTLNLRKKY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0187J06.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101779" stop="101991"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTVTSFVIPHLVRLPHLSSAASLCCHLRTVTGTTDRHKLRRWSLLHFSLKISAFSFGQISWKTKRNLYQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="101676" e_stop="102389"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="101676" e_stop="102389" e_length="714"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101676" stop="102389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334737" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAGGGTCTCGTTTCAAAATACTTCAACTCTTGGAATCTGGGTACTGGGATCACTTCTCTGATCTTCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTTCTTCAGCAGCTTCTCTATGCTGCCACCTACGGACCGTCACAGGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGGAAAACAAAGAGAAACTTATATCAAAATTAGCACAAAAAGGCTTTCGGACACACTAAACTTAAGGAAAAAGTATTAATTATACCGTGAAACCACAGTATATCAACACCCTCAACTTAAATCCGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATTCATGTTTTATCCTTTGTAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATACATGCTATCACTATTAGGATTGAATTTTGTGGGATTCGAACATCACACAGACTCACCATGCACTAGCACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCCGGTATTGCAACTAGTGTCCTCACTTTAGAACAAAATCCTCATTTTTCACACAATGATTTCAGTTTGAGTATAAGGATTAC</gDNA_template>
            <first_frame> R  G  S  R  F  K  I  L  Q  L  L  E  S  G  Y  W  D  H  F  S  D  L  H  D  E  P  A  G  R  T  V  I  A  M  T  D  R  H  K  L  R  N  P  T  L  G  Q  T  S  P  S  F  F  S  S  F  S  M  L  P  P  T  D  R  H  R  H  D  G  P  S  *  A  P  *  V  V  S  S  A  F  F  A  Q  N  L  R  I  Q  L  W  T  D  F  L  E  N  K  E  K  L  I  S  K  L  A  Q  K  G  F  R  T  H  *  T  *  G  K  S  I  N  Y  T  V  K  P  Q  Y  I  N  T  L  N  L  N  P  L  F  V  L  K  R  R  T  M  T  H  Y  T  I  F  V  Q  *  Y  S  C  F  I  L  C  N  H  L  A  I  N  P  D  *  S  H  Q  I  Y  T  C  Y  H  Y  *  D  *  I  L  W  D  S  N  I  T  Q  T  H  H  A  L  A  P  I  L  F  N  F  S  P  R  C  *  Q  F  R  Y  C  N  *  C  P  H  F  R  T  K  S  S  F  F  T  Q  *  F  Q  F  E  Y  K  D  Y </first_frame>
            <second_frame>  E  G  L  V  S  K  Y  F  N  S  W  N  L  G  T  G  I  T  S  L  I  F  T  T  N  L  Q  D  G  P  S  *  P  *  R  T  V  T  S  F  V  I  P  H  L  V  R  L  P  H  L  S  S  A  A  S  L  C  C  H  L  R  T  V  T  G  T  T  D  R  H  K  L  R  R  W  S  L  L  H  F  S  L  K  I  S  A  F  S  F  G  Q  I  S  W  K  T  K  R  N  L  Y  Q  N  *  H  K  K  A  F  G  H  T  K  L  K  E  K  V  L  I  I  P  *  N  H  S  I  S  T  P  S  T  *  I  R  C  L  S  S  S  D  A  L  *  L  T  T  Q  S  L  Y  N  S  I  H  V  L  S  F  V  I  I  W  L  S  I  P  I  N  L  I  K  S  I  H  A  I  T  I  R  I  E  F  C  G  I  R  T  S  H  R  L  T  M  H  *  H  L  S  S  S  I  S  H  R  G  A  N  N  S  G  I  A  T  S  V  L  T  L  E  Q  N  P  H  F  S  H  N  D  F  S  L  S  I  R  I   </second_frame>
            <third_frame>   R  V  S  F  Q  N  T  S  T  L  G  I  W  V  L  G  S  L  L  *  S  S  R  R  T  C  R  T  D  R  H  S  H  D  G  P  S  Q  A  S  *  S  H  T  W  S  D  F  P  I  F  L  Q  Q  L  L  Y  A  A  T  Y  G  P  S  Q  A  R  R  T  V  I  S  S  V  G  G  L  F  C  I  F  R  S  K  S  P  H  S  A  L  D  R  F  P  G  K  Q  R  E  T  Y  I  K  I  S  T  K  R  L  S  D  T  L  N  L  R  K  K  Y  *  L  Y  R  E  T  T  V  Y  Q  H  P  Q  L  K  S  V  V  C  P  Q  A  T  H  Y  D  S  L  H  N  L  C  T  I  V  F  M  F  Y  P  L  *  S  F  G  Y  Q  S  R  L  I  S  S  N  L  Y  M  L  S  L  L  G  L  N  F  V  G  F  E  H  H  T  D  S  P  C  T  S  T  Y  P  L  Q  F  L  T  E  V  L  T  I  P  V  L  Q  L  V  S  S  L  *  N  K  I  L  I  F  H  T  M  I  S  V  *  V  *  G  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0187J06.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101801" stop="102037"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHTWSDFPIFLQQLLYAATYGPSQARRTVISSVGGLFCIFRSKSPHSALDRFPGKQRETYIKISTKRLSDTLNLRKKY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0187J06.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101676" stop="101891"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGSRFKILQLLESGYWDHFSDLHDEPAGRTVIAMTDRHKLRNPTLGQTSPSFFSSFSMLPPTDRHRHDGPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0187J06.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101779" stop="101991"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTVTSFVIPHLVRLPHLSSAASLCCHLRTVTGTTDRHKLRRWSLLHFSLKISAFSFGQISWKTKRNLYQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="107761" PGL_stop="107208"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107761" e_stop="107208"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="107761" e_stop="107208" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107761" stop="107208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACAAACTGAGGAAGTGGTAAGAGAAGGTAAGGATGGGGAGAATGAACAAGTGCAGAATGATGAATTGCCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTTTCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCGGAGGTACAACATGCAGCTAATGTGGCTCCCCGCATGGATGCCTTATTGGAAATAGGCACGTTTCCTCGTCTGACTACAGGGCCTATAATGACAAATAATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTACGATTTTCTAGTTGAGTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGAGACTTATCAGTATCAAGGAAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  *  P  I  W  Y  *  G  G  D  S  S  T  N  *  G  S  G  K  R  R  *  G  W  G  E  *  T  S  A  E  *  *  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  F  L  S  *  R  V  I  *  S  G  P  D  T  S  S  V  F  C  T  N  T  S  G  F  G  G  T  T  C  S  *  C  G  S  P  H  G  C  L  I  G  N  R  H  V  S  S  S  D  Y  R  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  S  S  *  V  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  *  D  L  S  V  S  R  K  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  S  P  S  G  T  R  A  V  T  P  P  Q  T  E  E  V  V  R  E  G  K  D  G  E  N  E  Q  V  Q  N  D  E  L  P  P  Q  P  T  L  E  M  I  N  Q  V  L  S  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  T  P  P  V  S  E  V  Q  H  A  A  N  V  A  P  R  M  D  A  L  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  N  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  E  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  E  T  Y  Q  Y  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  V  L  G  R  *  L  L  H  K  L  R  K  W  *  E  K  V  R  M  G  R  M  N  K  C  R  M  M  N  C  H  P  N  L  P  *  R  *  S  I  R  F  F  L  I  L  A  G  Y  L  I  R  A  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  R  Y  N  M  Q  L  M  W  L  P  A  W  M  P  Y  W  K  *  A  R  F  L  V  *  L  Q  G  L  *  *  Q  I  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  T  I  F  *  L  S  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  R  L  I  S  I  K  E  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0187J06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107760" stop="107209"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSGTRAVTPPQTEEVVREGKDGENEQVQNDELPPQPTLEMINQVLSYLSGLSDQGQTPPVFSAPTPPVSEVQHAANVAPRMDALLEIGTFPRLTTGPIMTNNQHELFSKFLKLKPPVFKGAESEDAYDFLVECHELLHKMGIVERFGVEFETYQYQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="116015" PGL_stop="115296"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116015" e_stop="115296"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="116015" e_stop="115296" e_length="720"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116015" stop="115296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339766" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTACTTCAAAGTCAAATTCTTGTAGCAGTAGTACCCAACGAATCAACCTCGGTTTCTCATCCTTCTTTGCCATCAAATATCTCAATGTTGAATGGTCAGTATGTACTATAATTATAGTACCTAGCAAATAAGAGCAAAATTTTTCAAAAGCAAAGACTACTTCAAGGAGTTCTTTCTCAGTCACTGTGTAGTTCTTCTGAGCTTCATTTAGGGTTTTACTAGCATAGTAAATGGGGTGAAGGATTTTGTTCTTTTTTTGTCCCAATACTACACCAAGAGCAACCCCACTAGCATCGCACATCACCTCAAATGGACTATTCCAATATGGAGAAATAATGATAGGTGCAGACACCAATTTCACTTTTAGATCGCTGAATGCTTTAAGACAGGATTCATCAAAATAAAATTTACAATCTTTCTCCAGCAGTTTGCACAACGGATGTGCAATCTTTGATGAATCTCCGGTAAAAACCTGCATGCCCAAGAAAGCTTCTCACACCTTTTACAGAGATAGGTGGGGGAAGTCTCTCTATTACCTCGACTTTAGCTCTATCAACCTCTATGCCCTTTTCTGAATTGCGATGACCCAAAACAATACCTTTTTTCACCATGAAATGGCACTTTTCCCAATTTAGTACTAAATTGCAGTCTTCACATCTCTTAAGGACCTCAGATAAATATTCCAAACACCGCTCGAATGAATCACCAACCACTAAAAA</gDNA_template>
            <first_frame> L  T  S  K  S  N  S  C  S  S  S  T  Q  R  I  N  L  G  F  S  S  F  F  A  I  K  Y  L  N  V  E  W  S  V  C  T  I  I  I  V  P  S  K  *  E  Q  N  F  S  K  A  K  T  T  S  R  S  S  F  S  V  T  V  *  F  F  *  A  S  F  R  V  L  L  A  *  *  M  G  *  R  I  L  F  F  F  C  P  N  T  T  P  R  A  T  P  L  A  S  H  I  T  S  N  G  L  F  Q  Y  G  E  I  M  I  G  A  D  T  N  F  T  F  R  S  L  N  A  L  R  Q  D  S  S  K  *  N  L  Q  S  F  S  S  S  L  H  N  G  C  A  I  F  D  E  S  P  V  K  T  C  M  P  K  K  A  S  H  T  F  Y  R  D  R  W  G  K  S  L  Y  Y  L  D  F  S  S  I  N  L  Y  A  L  F  *  I  A  M  T  Q  N  N  T  F  F  H  H  E  M  A  L  F  P  I  *  Y  *  I  A  V  F  T  S  L  K  D  L  R  *  I  F  Q  T  P  L  E  *  I  T  N  H  *  K </first_frame>
            <second_frame>  L  L  Q  S  Q  I  L  V  A  V  V  P  N  E  S  T  S  V  S  H  P  S  L  P  S  N  I  S  M  L  N  G  Q  Y  V  L  *  L  *  Y  L  A  N  K  S  K  I  F  Q  K  Q  R  L  L  Q  G  V  L  S  Q  S  L  C  S  S  S  E  L  H  L  G  F  Y  *  H  S  K  W  G  E  G  F  C  S  F  F  V  P  I  L  H  Q  E  Q  P  H  *  H  R  T  S  P  Q  M  D  Y  S  N  M  E  K  *  *  *  V  Q  T  P  I  S  L  L  D  R  *  M  L  *  D  R  I  H  Q  N  K  I  Y  N  L  S  P  A  V  C  T  T  D  V  Q  S  L  M  N  L  R  *  K  P  A  C  P  R  K  L  L  T  P  F  T  E  I  G  G  G  S  L  S  I  T  S  T  L  A  L  S  T  S  M  P  F  S  E  L  R  *  P  K  T  I  P  F  F  T  M  K  W  H  F  S  Q  F  S  T  K  L  Q  S  S  H  L  L  R  T  S  D  K  Y  S  K  H  R  S  N  E  S  P  T  T  K   </second_frame>
            <third_frame>   Y  F  K  V  K  F  L  *  Q  *  Y  P  T  N  Q  P  R  F  L  I  L  L  C  H  Q  I  S  Q  C  *  M  V  S  M  Y  Y  N  Y  S  T  *  Q  I  R  A  K  F  F  K  S  K  D  Y  F  K  E  F  F  L  S  H  C  V  V  L  L  S  F  I  *  G  F  T  S  I  V  N  G  V  K  D  F  V  L  F  L  S  Q  Y  Y  T  K  S  N  P  T  S  I  A  H  H  L  K  W  T  I  P  I  W  R  N  N  D  R  C  R  H  Q  F  H  F  *  I  A  E  C  F  K  T  G  F  I  K  I  K  F  T  I  F  L  Q  Q  F  A  Q  R  M  C  N  L  *  *  I  S  G  K  N  L  H  A  Q  E  S  F  S  H  L  L  Q  R  *  V  G  E  V  S  L  L  P  R  L  *  L  Y  Q  P  L  C  P  F  L  N  C  D  D  P  K  Q  Y  L  F  S  P  *  N  G  T  F  P  N  L  V  L  N  C  S  L  H  I  S  *  G  P  Q  I  N  I  P  N  T  A  R  M  N  H  Q  P  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0187J06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="121427" PGL_stop="120838"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121427" e_stop="120838"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="121427" e_stop="120838" e_length="590"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121427" stop="120838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341053" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGTGAAGGTGTTTCTCCCTGTATCAGACTTCCTAGTACTCCAAGCTTTGTTATTCTGGGAGATTTTCTCTAATTTTTTAGCAATCTCAGCATAAGGACACTCCCCATAAGATCCACCTGCTATAGTGTCCAACACCGCTTTATTGTTATCATCCTGTCCCCGATAGAAGTATTACTTCAGTGACTCATCATCTATACGGTGATTTGGAACACTTCTCAAGAATGAGGTGAATCTATCCCAAGAACTACTAACTGACTCTCCTGGTAGTGCCACAAAGTTGTTCACTCTGTCTTTATGGTTTAGTTTCTTCGAGAACGGATAGTAGCTTGCTAAGAAGACATCTCTTAATTGGTTCCAAGTGAATATTGAGTTGTATGGGATCTCAGTGAACCATATAGCAGCCTCTCCCGTTAGTGAGAGAGGAAACACTCTGAGCCCTATTACATCTAGATCCAAATCAGGCCTCCCCACACAACTTTTACACACTGCCCTTACCTTAGCTATATGGGCATGTGGATCCTCAAAAGGTAGCCCTGAAAACAAACCTCTGGCAGTGAGCATTTGCATAAGGCTACTAGTTACCACAAA</gDNA_template>
            <first_frame> T  V  K  V  F  L  P  V  S  D  F  L  V  L  Q  A  L  L  F  W  E  I  F  S  N  F  L  A  I  S  A  *  G  H  S  P  *  D  P  P  A  I  V  S  N  T  A  L  L  L  S  S  C  P  R  *  K  Y  Y  F  S  D  S  S  S  I  R  *  F  G  T  L  L  K  N  E  V  N  L  S  Q  E  L  L  T  D  S  P  G  S  A  T  K  L  F  T  L  S  L  W  F  S  F  F  E  N  G  *  *  L  A  K  K  T  S  L  N  W  F  Q  V  N  I  E  L  Y  G  I  S  V  N  H  I  A  A  S  P  V  S  E  R  G  N  T  L  S  P  I  T  S  R  S  K  S  G  L  P  T  Q  L  L  H  T  A  L  T  L  A  I  W  A  C  G  S  S  K  G  S  P  E  N  K  P  L  A  V  S  I  C  I  R  L  L  V  T  T   </first_frame>
            <second_frame>  L  *  R  C  F  S  L  Y  Q  T  S  *  Y  S  K  L  C  Y  S  G  R  F  S  L  I  F  *  Q  S  Q  H  K  D  T  P  H  K  I  H  L  L  *  C  P  T  P  L  Y  C  Y  H  P  V  P  D  R  S  I  T  S  V  T  H  H  L  Y  G  D  L  E  H  F  S  R  M  R  *  I  Y  P  K  N  Y  *  L  T  L  L  V  V  P  Q  S  C  S  L  C  L  Y  G  L  V  S  S  R  T  D  S  S  L  L  R  R  H  L  L  I  G  S  K  *  I  L  S  C  M  G  S  Q  *  T  I  *  Q  P  L  P  L  V  R  E  E  T  L  *  A  L  L  H  L  D  P  N  Q  A  S  P  H  N  F  Y  T  L  P  L  P  *  L  Y  G  H  V  D  P  Q  K  V  A  L  K  T  N  L  W  Q  *  A  F  A  *  G  Y  *  L  P  Q  </second_frame>
            <third_frame>   C  E  G  V  S  P  C  I  R  L  P  S  T  P  S  F  V  I  L  G  D  F  L  *  F  F  S  N  L  S  I  R  T  L  P  I  R  S  T  C  Y  S  V  Q  H  R  F  I  V  I  I  L  S  P  I  E  V  L  L  Q  *  L  I  I  Y  T  V  I  W  N  T  S  Q  E  *  G  E  S  I  P  R  T  T  N  *  L  S  W  *  C  H  K  V  V  H  S  V  F  M  V  *  F  L  R  E  R  I  V  A  C  *  E  D  I  S  *  L  V  P  S  E  Y  *  V  V  W  D  L  S  E  P  Y  S  S  L  S  R  *  *  E  R  K  H  S  E  P  Y  Y  I  *  I  Q  I  R  P  P  H  T  T  F  T  H  C  P  Y  L  S  Y  M  G  M  W  I  L  K  R  *  P  *  K  Q  T  S  G  S  E  H  L  H  K  A  T  S  Y  H  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0187J06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121100" stop="120840"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LAKKTSLNWFQVNIELYGISVNHIAASPVSERGNTLSPITSRSKSGLPTQLLHTALTLAIWACGSSKGSPENKPLAVSICIRLLVTT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 125 chains have been computed
$ 
$ memory statistics:
$ 26496 bytes spliced alignments in total
$ 12 spliced alignments have been stored
$ 2208 bytes was the average size of a spliced alignment
$ 16352 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1635 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 153 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 14:44:22
-->
