<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 17:56:41"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320387" ref_strand="+" ref_description="SGN-U320387        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) | chr3:17724129-17727293 REVERSE | Aliases: T17F15.140(evalue: 2e-78, score=290) genbank/nr: gi|30692957|ref|NP_190382.2| zinc finger (C3HC4-type RING finger) protein family [Arabidopsis thaliana](evalue: 1e-76, score=290)">
      <seq>cgacagccttcaaaatctgtacaaaattgttccttcaatacatatctactcatcgatccctgaacggtagcattaccggagaataaaaaagttcgaatttttctcagtttggtcgctccaatttcaaacatttgcttactgaaatgaaaggggcagattttaaatggtacgatgggttcttcctgtcaatgttagcaaccagtataatcattgtggcgataaattggaagcggtaccatctttgtatatatccgttgcacatttggattgtggttgactacacaacagtgtttctttttcgtctcttgatgtttgttgataatggacttgctgctggaatgggatttggttaactagaaggcaagcccattctttacgtgctcaacaagggattcctacttccgaatttggggtgctggttgacatgatcagagtgccagattggacttttgcagcagcagggcaggagatgagagcaatgggccctgatgctacttcttatcatccaggactttacttaacccaagctcagacagaagcagtggaagcactcattcaggaactgccaaagttctgcctgaaggctgttcctactgactgtagcgagtgccctatctgtttggaagagtttcgcatgggaaatgaggttcgtggtctgccttgtgctcacaactttcacgtggaatgcattgatgaatggcttcgcctaaacgtgaaatgccctagatgccgctcttctgtctttccaaatcttgatctcagtgctttatccaatatccgaaccgattcagcggggtcaacagccaatgttgtgacagcagcacagtatgtgagatcccaaccctccagccagagctatctgctaagaatgcaaggtttgctccgccctgtacgcacacaggatgctggcgtgggcagtgaggttgatccagctgatagcagcaaccaagcatccacacctcatagtcacggattcgtggaacctgtacaagttatagtggaacagtccccaagggagctataaccatacttcctgaggaggttctttacctcaaatgtcttaacttgatgattcctaacaacttgtagccattgtcaagtgttcaaagtggtttctcattgcaaccaaatttcgtcaattagaaatgtggtagcaatgatttatgttcacagccagcttgttctgatggaacaatatatgtttgttttaccacgagtcatatcgattaattcatatactgtttttttctgtgtttaaatgaaccttcaagactttgtttcccattactaaaactgtataagtaacacaatctggtgctacttgttaatactaaagtagttatatatggtttccaattcttatcataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0197N20.1" temp_strand="+" temp_description="C06HBa0197N20.1  AC211062.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0197N20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9263" stop="15153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9563" g_stop="9728" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9729" i_stop="9835" i_length="107">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9836" g_stop="9874" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="205" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9875" i_stop="10150" i_length="276">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.806" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10151" g_stop="10217" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="272" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10218" i_stop="10305" i_length="88">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10306" g_stop="10379" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="346" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10380" i_stop="11518" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11519" g_stop="11584" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="412" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11585" i_stop="13140" i_length="1556">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13141" g_stop="13260" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="532" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="13261" i_stop="13395" i_length="135">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.803" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="13396" g_stop="13509" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="646" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="13510" i_stop="14130" i_length="621">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14131" g_stop="14853" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="1369" r_length="723" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1370" polyA_stop="1379"/>
      <MATCH_line gen_id="C06HBa0197N20.1" gen_strand="+" ref_id="SGN-U320387" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1369</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0197N20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9563" e_stop="9728"/>
          <exon e_start="9836" e_stop="9874"/>
          <exon e_start="10151" e_stop="10217"/>
          <exon e_start="10306" e_stop="10379"/>
          <exon e_start="11519" e_stop="11584"/>
          <exon e_start="13141" e_stop="13260"/>
          <exon e_start="13396" e_stop="13509"/>
          <exon e_start="14131" e_stop="14853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACAGCCTTCAAAATCTGTACAAAATTGTTCCTTCAATACATATCTACTCATCGATCCCTGAACGGTAGCATTACCGGAGAATAAAAAAGTTCGAATTTTTCTCAGTTTGGTCGCTCCAATTTCAAACATTTGCTTACTGAAATGAAAGGGGCAGATTTTAAATGGTCAGTTCTTGAAATTTTTACATCTTTTTAGTAACTCTAAAATTTGCTTTGTAAAGATTCAAGATAACTTTATTGAGTATGTTTGGTGTTGAAACTGAATTTTGCAGGTACGATGGGTTCTTCCTGTCAATGTTAGCAACCAGTATGTATCCTTTTTCAATATTCATTCTGAGTTCCATTCTGTAAATGGGAGGTACCCTGGATGCTGAATTGGGGTTTTCATCTGTAGTTTCATTGCTAGTGTCTCACTGTCTTGGGGGTTCTGTTTTTTTTGAAAAAAATTGGGGGTAGGGGATTACTAGGTGAGGAATGGAACTGTTGCCAGATAGCCAAGCAACTGAGCTACTAAGATTCCCAGGCTAGTATATTTGGTGTTCCTTGTCTTGAATTGTTTTATCTTTCCTTAACTGTTTCTTTATTAGAATCATTGTGGCGATAAATTGGAAGCGGTACCATCTTTGTATATATCCGTTGCACATTTGGATTGTGGTGGGTATAAAAACAATGCTTTGTTTACTGAAAATTGGTGTAGTATTTTTTTGGGAAGATTCAGTTGTTTTCCCTTTTGCTGATACAGGTTGACTACACAACAGTGTTTCTTTTTCGTCTCTTGATGTTTGTTGATAATGGACTTGCTGCTGGAATGGGATTGTAAGTCCACCTCTATAGGACTATAGTATTTACTTCCATTTTTTCTTACAAAAAGTCATTACTTGTCTTCTCCTTCGTCCCGAGCTAATTTTACGAGTTTTTCCCTCATTAAGAGTCTGTTAATTTTGATATTACTCTTACCTAGGTGGTTGGCAATCTACTCTTTTGTGCATGTAGTATGAATATCATGCAGAGTTAGTGGTGAAGCCAGGAATCCAAATAAGGGTTTGAAAGAAAAAGAATTATACCAAGGGATTCAACAACTTATATATATGCTCCCAGAAAAAAAAGCATTTTAATTTGCCCTATTTTCATAGTATAATTTTTCATCTGCCCCTGTCCAGAGTTGTTACTTTGATTGGGAGTATCCTTTAGAATTATGTTTGATGTTCAACCCTCTCACCTTTTAATCAAAGCTAGTGGTGACACATGACATTAATAGTTAGTGGATTTTCATTAAATTATTTTGGTTAACATGAGGATCTTATATTCATTTCCTTACCCGATATGAATCATGGTTTCAGATGACAAGGACTGAAGTATAGGTGTTATTAAATTTTAGGGATTTGGGTTGGCAGCAGAGATACAGTCGCTTTCGTGGAAGAATAGTTGTTCTTTCAATTCTTGCCCTGTTTCTGTATCCTTTTCTTTGGGCTTGGACCATTATCGGGACTTTATGGTTCACTAGTGCGAGAAACTGTGTAAGTTACCGAAGATCTCATTGACTTAAGATGTTCAGATCTGAAACCTTAGGATAGATATGACTGTTGAATTCTTTCAGTTGCCAGAAGAAGGTCAAAAGTGGGGTTTCCTTATTTGGTTGCTGTTCAGCTACTGTGGACTCATTGGCATAGCTTGCATATCAATTGGGAAGGTTAGTCTTCCAGGGCAAAAACTAGTCCAAAACGTTTAACTGATTACCTGATTCAATTTCGACAGCATTGTTGGCCTCTTCTTCCCCAAAAAATCGTTGAGACGACCTGTAAGAAAAATAGTAACCTTTAATACCCCCAACTTATTATTTCTTGGGGTAATTTTGTTGTACGTACGCATAGAAGTGCACGGTCTAACAAATGACTTTTATGCATTTGAAGTGATACCAATACTACATCTATTAAGTGTCAAATATCTCTTTGCAGTGGTTAACTAGAAGGCAAGCCCATTCTTTACGTGCTCAACAAGGGATTCCTACTTCCGAATTTGGGGTATGCTTTAGAACCTAAATTGTATTGTTATATCGTGATCATTATTAATAGCTAAAATTTTGTGGTAGCCCGTGCTATCTCTCGATGTTATAATTGATTTTTCCTTCAAAGTTTGAAGGTCTCATAACTCCATTTTCTTGGCTTACATGTGAAAAGATAATGATCATAGTTTGCATTGCTAGCCTTGCTTTGGACTTGTGTAAGCTGCTCTCTTTTGATTCAGATTTTTGGTGTTGGAAGTTTCCTAACCCCCTTCCACCAGCTGTTTGCATAGAAGTACCAAAAATTGAAATGGAAAAGAAAATCAAAGTGGTATACATTTTTCTAATATCTCATGGGGATTATTGCACTTTAATGACATCAAATTTCTTTAAGCTATGAAGCTACGTGTCTGTGAATTGACCTTTGGTTGGTGAAAATTAGGCATGGTCTAATATACAAAGAGATGATGTGGATCTTTCTTGGTGCTTCAAGGAGTTCAGTTGAAGTTTGAGGCTAGCTACTGTCTGAAATGATCCGCTTAGTCAATGGATTCATATAGCTGACTGAACTAGTTTTTATTTGAAGCATAGTTGGTGTATTGATATTTGTTGTAATTAAGCTTATTGACACAAATCTTGATCTTGTAAAAAATGTGTAAAGCTGCAAATTGGTGCCTCTTTCCATCAAAAATTCTAGTGCACGAATGATATGAGAATACTAATGCATAAACTTTATCATGTCATATCTGACTTGGGCATGAAATCAGAGTGATTAAATAATAGGATTACAGAAAGCTCCTAGCACTCGTGCCACAAGAACTGCAACTGCAACTTTCCTTTCCTTATACACTTTAATGGTAGTAATCTGTAGTAGTCACTACTATATCTTCTAAATTTTTTGGTTAAATATCACGGTCTTGTGCATCTTTTGTGCATCTTGTTGTATAGATCTTGATAAGTATAAAACATTTTAGCTTAACTAATGGTCTGATCTCAAGGTTCGGATGGTTGATCCAATTCAAGCATCGCAGGAGTAAGATGATCAATTCCGAGTTACTTTACTGGATATATACTATTTCTGCGGGGAGATTTACAATTAAATAGAAGTGTTTATTGTAAGATATTTTGCATGATATAATCTAGTAAATTTATTCACTAATCAGCACTTTAACAATTTTGTTTTCGTAAGCTAGTTTTAGGAAGTTACAGCAATGTCAAGAATGAACTCAAATAATTTAAGTTCAGATTAGTTTGTTACTTCTTTTGAGGCCGAGTGCAACTGGACTCTGTCTAATTTTTTAGGTTTTAGAGTTTGCACTTTCGTAGTGTCAAGTGTCCCAAATTAGGTGAGGGTATAAGCTGTAATATCTTTATATGGTCTTAGACAATCTTCACGTTGTGAGCTAGATTTAGGTCAAGTTCAAGGCCCATTTTTCTTAATATGGTATCACTCCCGACTCGTTTTTCTTAACACATAGTTTAACATCGGTAATGGATGTCTGATTTTGCTTCTCATAGGATATAGTAATTAGATATTTGTTTCTATTGACATGTTTAACCTTTGCGTCAATGCAGGTGCTGGTTGACATGATCAGAGTGCCAGATTGGACTTTTGCAGCAGCAGGGCAGGAGATGAGAGCAATGGGCCCTGATGCTACTTCTTATCATCCAGGACTTTACTTAACCCAAGCTCAGGTAACAAGTACCATTTTACTATCAATAGCTGGAGTCACTAGTCAGTGGTCATCATAAATCTCCATGCTACGCTTGGTCAACTGAAATCCTTTTGGATCATCCTAACTTGGTGGTATCTCTCTATTTGGCACACAGACAGAAGCAGTGGAAGCACTCATTCAGGAACTGCCAAAGTTCTGCCTGAAGGCTGTTCCTACTGACTGTAGCGAGTGCCCTATCTGTTTGGAAGAGTTTCGCATGGGAAATGAGGTAACTGTCTCTCTTGTGTAAATACTACTTTATTGTACTTCTTGAAAAAATAAAACTTATGGTTAACCTTTTCTCTTCCATCATGCCCTTAAAATAACTTTACTGAAATTGTAAACATTTTGTCAAGCATTCTCAAGTGTGTTCAAATCCATACCATGATGTAATGATTCCGGCTAAATTATATTTGAGTACACCTAGCCAATGCTCTAGCACACTAATTTTATGGAAGTCAAATTAATTCCTTAATATCCTTGCAGAGTAAATTAGATCAAACTTGTGTGTGACTACTGGAGATATAATTTAAAGGTGCCTGCTCAATAAGTATGGAAGTATTTATTTTCCTGTACTGTCCATATCCCAGCTCACTCTGAGAAAAAAGCAAAAGCATAACTGTTAAGGAGGATGATTTGTGTTTGGGTTCACTTTTGAGGAGATTCTGCCTTGTCGATTCACTGTTTTTTATTACTCAGCCTACAGATTATACTTGAGTTAGGGATCTGGGGATATTGCTGAGCTTGAATGCATACTGATTTTGATTAAGCAGTATGAATACGAATTTTACATCCGTGCTTAATCTAGGGAGGAGTATTGCCTTATCTTACTACAAGATTTCATATGCAGGTTCGTGGTCTGCCTTGTGCTCACAACTTTCACGTGGAATGCATTGATGAATGGCTTCGCCTAAACGTGAAATGCCCTAGATGCCGCTCTTCTGTCTTTCCAAATCTTGATCTCAGTGCTTTATCCAATATCCGAACCGATTCAGAGGGGTCAACAGCCAATGTTGTGACAGCAGCACAGTATGTGAGATCCCAACCCTCCAGCCAGAGCTATCTGCTAAGAATGCAAGGTTTGCTCCGCCCTGTACGCACACAAGATGCTGGCCTGGGCAGTGAGGTAGATCCAGCTGATAGCAGCAACCAAGCATCCACACCTCATAGTCACGGATTCGTGGAACCAGTACAAGTTATAGTGGAACAGTCCCCAAGGGAGCTATAACCATACTTCCTGAGGAGGTTCTTTACCTCAAATGTCTTAACTTGATGATTCCTAACAACTTGTAGCCATTGTCAAGTGTTCGAAGTGGTTTTTCATTGCAACCAAATTTCATCAATTGGAAATGTGGTAGCAATGATTTATGTTCACAGCCAGCTTGTTCTGATGGAACAATATATGTTTGTTTTACCACGAGTCATATCGATTAATTCACATACGGTTTTTTTCTGTGTTTAAATGAACCTTCAAGACTTTGTTTCCCATTACTAAAACTGTATAAGTAACACAATCTGGTGCTACTTGTTAATACTAAAGTAGTTATATATGGTTTCCAATTCTTATCATAAA</genome_strand>
        <mrna_strand>CGACAGCCTTCAAAATCTGTACAAAATTGTTCCTTCAATACATATCTACTCATCGATCCCTGAACGGTAGCATTACCGGAGAATAAAAAAGTTCGAATTTTTCTCAGTTTGGTCGCTCCAATTTCAAACATTTGCTTACTGAAATGAAAGGGGCAGATTTTAAATG...........................................................................................................GTACGATGGGTTCTTCCTGTCAATGTTAGCAACCAGTAT....................................................................................................................................................................................................................................................................................AATCATTGTGGCGATAAATTGGAAGCGGTACCATCTTTGTATATATCCGTTGCACATTTGGATTGTG........................................................................................GTTGACTACACAACAGTGTTTCTTTTTCGTCTCTTGATGTTTGTTGATAATGGACTTGCTGCTGGAATGGGATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTAACTAGAAGGCAAGCCCATTCTTTACGTGCTCAACAAGGGATTCCTACTTCCGAATTTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGGTTGACATGATCAGAGTGCCAGATTGGACTTTTGCAGCAGCAGGGCAGGAGATGAGAGCAATGGGCCCTGATGCTACTTCTTATCATCCAGGACTTTACTTAACCCAAGCTCAG.......................................................................................................................................ACAGAAGCAGTGGAAGCACTCATTCAGGAACTGCCAAAGTTCTGCCTGAAGGCTGTTCCTACTGACTGTAGCGAGTGCCCTATCTGTTTGGAAGAGTTTCGCATGGGAAATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTGGTCTGCCTTGTGCTCACAACTTTCACGTGGAATGCATTGATGAATGGCTTCGCCTAAACGTGAAATGCCCTAGATGCCGCTCTTCTGTCTTTCCAAATCTTGATCTCAGTGCTTTATCCAATATCCGAACCGATTCAGCGGGGTCAACAGCCAATGTTGTGACAGCAGCACAGTATGTGAGATCCCAACCCTCCAGCCAGAGCTATCTGCTAAGAATGCAAGGTTTGCTCCGCCCTGTACGCACACAGGATGCTGGCGTGGGCAGTGAGGTTGATCCAGCTGATAGCAGCAACCAAGCATCCACACCTCATAGTCACGGATTCGTGGAACCTGTACAAGTTATAGTGGAACAGTCCCCAAGGGAGCTATAACCATACTTCCTGAGGAGGTTCTTTACCTCAAATGTCTTAACTTGATGATTCCTAACAACTTGTAGCCATTGTCAAGTGTTCAAAGTGGTTTCTCATTGCAACCAAATTTCGTCAATTAGAAATGTGGTAGCAATGATTTATGTTCACAGCCAGCTTGTTCTGATGGAACAATATATGTTTGTTTTACCACGAGTCATATCGATTAATTCATATACTGTTTTTTTCTGTGTTTAAATGAACCTTCAAGACTTTGTTTCCCATTACTAAAACTGTATAAGTAACACAATCTGGTGCTACTTGTTAATACTAAAGTAGTTATATATGGTTTCCAATTCTTATCATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319042" ref_strand="+" ref_description="SGN-U319042        Tomato 200607 #1 [15 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:9554932-9558280 REVERSE | Aliases: T17H3.1(evalue: 3e-62, score=235) genbank/nr: gi|20466272|gb|AAM20453.1| unknown protein [Arabidopsis thaliana](evalue: 2e-60, score=235)">
      <seq>aaacaccatttccaaagactccatagaagatctcttcgaagaagaagaagaagagtaaatatggcgatggccaacgcttgggctgcggcgggacacgtcaccgtccgtccttcgctatcttcttcatcaccttcttctacttatttcgttaattttccaaataaatcatttcttaaaaaccccaaaaactccaggctttgttgccgatgcgttactgtaaacaacaccgcaactccttctgctgatgaaaattgtaacaatacttgcttcgcttcttcttcttcttcttcgacatcgttagattgggattggaatcggtggactcgctatttctctgaaattgaacaagttgagagctatgcctctgtgttaaagtttcaacttgaagaagctatagaaaaggaagactttgaagaagctgcaaaattgaaagcatctattgcagaagctacatcgaaggactcagttgctgaaattatgtccatgttgaagaatgcaatagatgaagagcgttatcatgatgcttcaagattgtgccgaagtacgggaagtggcttggttggttggtgggttgggtattcaaaagattcagatgatccatttggtagactaatacgtattactccaggtgtgggcagatttattggcagaagttttactccaaaacagttggtcaaagcctctcctggaactccactttttgagatttttgttgtcaaagatggaaataacacttacaacatgcaggtggtgttgttgcagcgagccaaaggaagtgcagcaagttcaagcccatcatccaagttgaagccaatgaagggaccttcatctgctgaaattgagaacagagctgtaattgatgttaaagtagatgaagcagaagcagaagcagaaaaaagcaatgagaagagcatagattttgagggagctgctgaagagggaataagaagtgtgataaattttcttaaagataaaatacctgatctgaaagtgaaagtaatgaaagtcaatattactgaagaaatgacagatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0197N20.1" temp_strand="+" temp_description="C06HBa0197N20.1  AC211062.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0197N20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15132" stop="20317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15432" g_stop="15806" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15807" i_stop="18437" i_length="2631">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18438" g_stop="18554" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="492" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18555" i_stop="18679" i_length="125">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18680" g_stop="18745" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="558" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18746" i_stop="18992" i_length="247">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18993" g_stop="19099" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="665" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19100" i_stop="19173" i_length="74">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19174" g_stop="19255" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="747" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19256" i_stop="19730" i_length="475">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19731" g_stop="20017" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="748" r_stop="1034" r_length="287" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0197N20.1" gen_strand="+" ref_id="SGN-U319042" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1034</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0197N20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15432" e_stop="15806"/>
          <exon e_start="18438" e_stop="18554"/>
          <exon e_start="18680" e_stop="18745"/>
          <exon e_start="18993" e_stop="19099"/>
          <exon e_start="19174" e_stop="19255"/>
          <exon e_start="19731" e_stop="20017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACCATTTCCAAAGACTCCATAGAAGATCTCTTCGAAGAAGAAGAAGAAGAGTAAATATGGCGATGGCCAACGCTTGGGCTGCGGCGGGACACGTCACCGTCCGTCCTTCGCTATCTTCTTCATCACCTTCTTCTACTTATTTCGTTAATTTTCCAAATAAATCATTTCTTAAAAACCCCAAAAACTCCAGGCTTTGTTGCCGATGCGTTACTGTAAACAACACCGCAACTCCTTCTGCTGATGAAAATTGTAACAATACTTGCTTCGCTTCTTCTTCTTCTTCTTCGACATCGTTAGATTGGGATTGGAATCGGTGGACTCGCTATTTCTCTGAAATTGAACAAGTTGAGAGCTATGCCTCTGTGTTAAAGGTACCTTCTTTCTTATCCTTTTCTCGTATGGTCGGTCAATCAACTAATACTTATTATTTCAAAAAGTCACTTTTCTCGATTCCAACTTTTTTTCAACAGAGAAAGTGACTTTATGAGGTAATATCTATAAATTCAGGGACTGAAATCAACTCTGTATTTTGATGAAATTGGTATTATGTGTTACATCTTTTGGAGTCTCTGTAACCAAGGTATCAGTTGTTGTTGCTATGTTTAACTAAGGTCTTTGTTTGCTGCGGGACTTTTTAGTTTGGTTAGCAGTCTGTTATATATTGAGTGTGAGATTTGGTGAGTCTGTAAAAGATATCTTATTTTTCCGAATAACCACAAATTCTTGATATTTGCGTCAATGGGCTCAATTAGAGCTGAATAGATATTGAGTATTCATATAATTGATCCGAAGGTCTTTCAGGGACAACCTCTCTACCTCCACAAGGTAGTGGTAAGTCTTGCGTGCGCTCTACTCTCCCTAGACTCCACTTGTGGGATTTCTCTGGATACGTTGTTGGTATAAAGTTGACTCTAACTGGTTCTGGATTAAGGATATCTGCTGCAGTTTTGTCAAGTAATATTTTTTAGCATCAGGTGCTTCTGTGGACCACCAAAGATTTTCCTGAATCCATGTTAAATTCCTTTATTTTTTTTTTTTGCTTTTGAACTTGAGAAACTGTATCTAATAATTGTTTTTGAAATAGCTGTATCAAATAATTGTATAAGAATGGAAGCTTCAACATCTTAGTGGAAGCTCAGAGTCTATGATGTAGTTTCTTTGAATTCTGATACCCATAGAATAATGTTTTTAATCAATTATATGGTTCATAGTTTGTGGAGATGAACTTCACACTTGCTTGTTGCTAATTAGACATGCTTATAAAACAAAGAAAGAGGATGAGCAATGACCATAGAGAAATGTAGTTTGGCCGTCTTCATAGGAAGATAAGGAGGAGTTACGAAAGGTTTATGCTTTCTGTTCATAGCTTAAGAGATGTGAGTGGTGCTAATAGGTGCATCCTACCTTTCTAATTCGTGTACGCTCCATTGCATATGTCCCACACTGTTGATGGAAGAATAAAGTAAAAGACTACTGGATTGGTCCCTTCTGCTTATACCCTTTGTGACAATCATAAATGCACAAGCTAGAAAGCAAGAAGACAAGTCTTTCTTCTTTTCCTATTAAATTATCTAAAAGAAAGTAGAGTTATCTGATCCCTCACCTCGTCATTTTGCTTTCGGAAATTTTATTATTTCCTCTTGCTTCTGTTATTAAGAAGGAATCTAGAACTAACTAGCTTTGATTAAACAAATTTTATTATTTCCTGTTGCTTCTGTTTAAAAAGGAATCTAGAACTAACTAGCTATGATTAAACTTTCACATTTATGATTTTGAAACCAGTATATCACCAAGGACAGAAAAAAAACTTCAGCAGCTGATTGTTATGGAATTTGTATACTTTGGGCAGTTAGCTGTGTCCTATGTTTAAGTTGTTGACTAACCGATCTATCAAGGCCAAGAGTACCCTGAGGAGGTATTCTCTTGTACCGTGAGGCATTCTTCCCTTACCCACTTACTGTTGGTATATCAACAGTTCACGCAAGAATCGACAGGAAGTCTTGTGCTAAAAAAACTGCCTCAAGGAGTAGAGAAGGGGATAGAATATAACGACCCGAGGCTGTCGTATTCTTCCAATGTGGGACATGGTAAAAGGTCCTGTGGTATGAACAACTGACAAAGAGGGACTCACAGTTCCATATTCAAGATATTGAATTATCTCTGACCAGCTGCTTGACAATCCAATTGAGAAAAACCGCTAGAAGGGTGTAAAGGTGTCATTTTAGAAACTGGGCAGCAGGAAAAAAAATTAGAAAGAGTAATAGGGAGTTGACAGAGTTGGTCTGCATGCAATTTATAATGCAATGCATCTCTTTTTATGTCCCTAAAGAATGAATATCTTGCTTAACCACTCTCTAAAATCAAGTTTAGCGGTACAAATCAGCGTTGGCATGCCACTTCTTCATTATTTTCTTGTCCAGATGAAACTCCTCAGTTCTTATAGAAGAGGAGAAATAATTGTTTTCCAGTTGTTTTTAGGACAGGTAGACATCACATATATGGTCTCCATATTTTAATTTGCAATTACTAGAAATAGGTGGGTAGATGGGAACTTACGAGTTGATTGTACTTTATAATATCACACTTCAGTTCCCTAGTGAAGAATTTAGATACATTGTGATCCATTTGTCTATTCTTTCCACTGGTATATCCACCATGCACTGGTCCAAGAAACTCTTCTAGACAACCAAGAAAATGGTAAACACGTTCTTGTCTGATTGGTCGTCATATTCAATTGATATTTGATTTTCTTTTCTGCTGCTTTTCCGTCATATAAGCGACCGCCAAATGTTTCCTCTTATATTATCATGAGCAGATCCTGTTTATTGATTACTGATAGCAATTTAGTATGCTTCTTTTAAATGTTTTGAGAAGGTTCCCTATGGAACATGTGGTTCCGATGTAAAAGAAATTCAGATGGTTTTGTTTTTTAAATTAAAAATGTCCCAGGAAGCTCTATTCCTATGAGTTCTAACTGGTTGTATGTTTACTATGTTTTACAGTTTCAACTTGAAGAAGCTATAGAAAAGGAAGACTTTGAAGAAGCTGCAAAATTGAAAGCATCTATTGCAGAAGCTACATCGAAGGACTCAGTTGCTGAAATTATGTCCATGTTGAAGGTATAAATTGCAGTTAAATAGCATTAAGTTCCCATTATCCACAGTTTCTAACTGTCTCCATTGGACACTGGTCCTTACTTGCATCTGGATATTGTCAATGATTTCTTTTCTCCTTCTGCCTCCAGAATGCAATAGATGAAGAGCGTTATCATGATGCTTCAAGATTGTGCCGAAGTACGGGAAGTGGCTTGGTAATACTTATCATCTAACACTTAAATCTGTAGGCTCCTTAGTGAGCCTTTTTGTACAACCACATTACTAGCATAAAACAATGCATGCACTTTAAAATTTATTTATCATGTATTAAATCCGTGTTCGAGTCTTTTTATCTCTATATACGATAGAGATAGATTACCTTTTTACTTTAGAACCACCTGTATAGTTATGTTAAGTTCATGACTGACCTTCCCTCACCTCTTATTTCACTTCAAACTGCAGGTTGGTTGGTGGGTTGGGTATTCAAAAGATTCAGATGATCCATTTGGTAGACTAATACGTATTACTCCAGGTGTGGGCAGATTTATTGGCAGAAGTTTTACTCCAAAGTAAGAATACAAAGCTGGAAGTTAAAGCTGCTGTCATTTATTTGATTTTTGATGAATTGAGTTGGTAATTTCAGACAGTTGGTCAAAGCCTCTCCTGGAACTCCACTTTTTGAGATTTTTGTTGTCAAAGATGGAAATAACACTTACAACATGCAGGTGATGTGCAACTGTGATTAATATTTATCTTTTAACTTTGCTGGTGTCTATTATTTGTCTTTCACTGAGCTACCAAGAAAATGAGGATTTCCTTTCAGATTTCTTGATATTTAAATCCTCATGCTGACAGTCTTAAATGTATTTTTGTTATAAAGTGGACAATAAGCAGATTTCCACTTGTGCACCAAGTAATAGCTTGTTTTGTGTCATTATACCAATCCATCGTGATAATCAGAACATTGTGCTTGGAAGGTTTCACTATGTTTCCAAGATGAGCTGACTCACTGTTATCTTTTCCTAAATTCAAATAAAAAAAATATTGCTTTCAGTTACTAGTCATATTTAGGTGTACTCTGATAACTATCAGTGTCCTGCACTTTATCTAAATGTTGCTGCTGTTCAGGGTTGATTCTATATGTTATACTGTCACCTTGACTGTGTTAATGCTGCTTCTGATGTCTGTTACCCCTGCCAGGTGGTGTTGTTGCAGCGAGCCAAAGGAAGTGCAGCAAGTTCAAGCCCATCATCCAAGTTGAAGCCAATGAAGGGACCTTCATCTGCTGAAATTGAGAACAGAGCTGTAATTGATGTTAAAGTAGATGAAGCAGAAGCAGAAGCAGAAAAAAGCAATGAGAAGAGCATAGATTTTGAGGGAGCTGCTGAAGAGGGAATAAGAAGTGTGATAAATTTTCTTAAAGATAAAATACCTGATCTGAAAGTGAAAGTAATGAAAGTCAATATTACTGAAGAAATGACAGATGA</genome_strand>
        <mrna_strand>AAACACCATTTCCAAAGACTCCATAGAAGATCTCTTCGAAGAAGAAGAAGAAGAGTAAATATGGCGATGGCCAACGCTTGGGCTGCGGCGGGACACGTCACCGTCCGTCCTTCGCTATCTTCTTCATCACCTTCTTCTACTTATTTCGTTAATTTTCCAAATAAATCATTTCTTAAAAACCCCAAAAACTCCAGGCTTTGTTGCCGATGCGTTACTGTAAACAACACCGCAACTCCTTCTGCTGATGAAAATTGTAACAATACTTGCTTCGCTTCTTCTTCTTCTTCTTCGACATCGTTAGATTGGGATTGGAATCGGTGGACTCGCTATTTCTCTGAAATTGAACAAGTTGAGAGCTATGCCTCTGTGTTAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAACTTGAAGAAGCTATAGAAAAGGAAGACTTTGAAGAAGCTGCAAAATTGAAAGCATCTATTGCAGAAGCTACATCGAAGGACTCAGTTGCTGAAATTATGTCCATGTTGAAG.............................................................................................................................AATGCAATAGATGAAGAGCGTTATCATGATGCTTCAAGATTGTGCCGAAGTACGGGAAGTGGCTTG.......................................................................................................................................................................................................................................................GTTGGTTGGTGGGTTGGGTATTCAAAAGATTCAGATGATCCATTTGGTAGACTAATACGTATTACTCCAGGTGTGGGCAGATTTATTGGCAGAAGTTTTACTCCAAA..........................................................................ACAGTTGGTCAAAGCCTCTCCTGGAACTCCACTTTTTGAGATTTTTGTTGTCAAAGATGGAAATAACACTTACAACATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGTTGTTGCAGCGAGCCAAAGGAAGTGCAGCAAGTTCAAGCCCATCATCCAAGTTGAAGCCAATGAAGGGACCTTCATCTGCTGAAATTGAGAACAGAGCTGTAATTGATGTTAAAGTAGATGAAGCAGAAGCAGAAGCAGAAAAAAGCAATGAGAAGAGCATAGATTTTGAGGGAGCTGCTGAAGAGGGAATAAGAAGTGTGATAAATTTTCTTAAAGATAAAATACCTGATCTGAAAGTGAAAGTAATGAAAGTCAATATTACTGAAGAAATGACAGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317164" ref_strand="+" ref_description="SGN-U317164        Tomato 200607 #1 [23 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:9554932-9558280 REVERSE | Aliases: T17H3.1(evalue: 6e-106, score=381) genbank/nr: gi|18396370|ref|NP_564287.1| hypothetical protein [Arabidopsis thaliana] gi|15027911|gb|AAK76486.1| unknown protein [Arabidopsis thaliana] gi|21281187|gb|AAM45133.1| unknown protein [Arabidopsis thaliana](evalue: 5e-104, score=381)">
      <seq>ttttcttaaagataaaatacctgatctgaaagtgaaagtaatgaaagtcaatattactgaagaaatgacagatgatggtgattcagtgaagcaatttctggaagaagaagatgacaacactatttccagtgaggagacagatgaaacaactactgatttggataacatgaattccgaccgagttacagtaggaggagatagcggcacaagtgaagaaggaaaaactgtagataccaagctttttgtagggggtgtattacataataaagaagacaatccattaaaggatgagtttgttcgtttccctgttgagatcaaagatgtggcaaaggattcctttgtgcttcacatccccaagagacctggagaacacgatgctgaagaaaatactgcgtcaagcattaatgaggcagctattgcagctcagagtatctctgaactaatgcctcctgatgtggccaaggcattttggagttctgataaagcttcttcaaaagtttctagagatgttaaggagatgctaaagcttgcagttactcaggcacagaagcgatacaaattatctgaatacacaagttttagtcgaataacctctcctggggatttagatccttttgaaggtctatatgttggtgcatttggaccttatggaactgaggtagtgcaattaaggcggaagtatggtaactggaatgtaaatgatgctgaaaaatcctctaatgtggagttctttgagtatgttgaggcggtaaagctaacaggggatatcaatgtgcctgctggcgaggtgacatttcgagctaaaataagtaaaggaagtcgcttgtccaacagggggatgtatccagatgaacttggtgtgcttgctggttacaagggtcaaggaagaatagctgaatatggtttcaaaaacccaaggtgggttgagggagagcttctacaactcaatggaaagggaatggggccacacctcaaaggtgcagaccttggctttctttatgtcattccggagcacagctttcttgtactcttcaatcgcttgaaactaccagagtaaagatacaagttgattgtatgactttggacccagttgtgtggttaggctaggagaagatcatattccttcttccaacagattttttcccttttgccagataacctttccagtgtttttatcagagaggaatcaaccttcaatgtgatcgaaaaagccaaccctttcccctccctttttgccactgtgagtgttttgctgtccaataatatgatacatcctttcagttttcatcataaacactaaaaactcatatcttgtaatgcatttttttttgttaagagatgatgtggataatagtattctagctgagttgaaattcatatatattaatgagttcctcttctctacggtcgtagaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0197N20.1" temp_strand="+" temp_description="C06HBa0197N20.1  AC211062.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0197N20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19643" stop="23781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19943" g_stop="20438" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20439" i_stop="20751" i_length="313">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20752" g_stop="20875" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="620" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20876" i_stop="21125" i_length="250">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21126" g_stop="21292" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="787" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21293" i_stop="21364" i_length="72">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21365" g_stop="21439" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="788" r_stop="862" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21440" i_stop="22804" i_length="1365">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22805" g_stop="22897" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="863" r_stop="955" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22898" i_stop="23020" i_length="123">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23021" g_stop="23481" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="956" r_stop="1416" r_length="461" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1417" polyA_stop="1441"/>
      <MATCH_line gen_id="C06HBa0197N20.1" gen_strand="+" ref_id="SGN-U317164" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1416</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0197N20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19943" e_stop="20438"/>
          <exon e_start="20752" e_stop="20875"/>
          <exon e_start="21126" e_stop="21292"/>
          <exon e_start="21365" e_stop="21439"/>
          <exon e_start="22805" e_stop="22897"/>
          <exon e_start="23021" e_stop="23481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTAAAGATAAAATACCTGATCTGAAAGTGAAAGTAATGAAAGTCAATATTACTGAAGAAATGACAGATGATGGTGATTCAGTGAAGCAATTTCTGGAAGAAGAAGATGACAACACTATTTCCAGTGAGGAGACAGATGAAACAACTACTGATTTGGATAACATGAATTCCGACCGAGTTACAGTAGGAGGAGATAGCGGCACAAGTGAAGAAGGAAAAACTGTAGATACCAAGCTTTTTGTAGGGGGTGTATTACATAATAAAGAAGACAATCCATTAAAGGATGAGTTTGTTCGTTTCCCTGTTGAGATCAAAGATGTGGCAAAGGATTCCTTTGTGCTTCACATCCCCAAGAGACCTGGAGAACACGATGCTGAAGAAAATACTGCGTCAAGCATTAATGAGGCAGCTATTGCAGCTCAGAGTATCTCTGAACTAATGCCTCCTGATGTGGCCAAGGCATTTTGGAGTTCTGATAAAGCTTCTTCAAAAGTATGCAAACATATTATCCTAAATATAATCGTTACATTCTGCTTGTAGTTGTGGTTTGAGGATATCATCTCATACACAGTGAGTTCAGTAACAAAGTAAATTGATGGAAAATCAACCATCTACCTCGTCATATGAAGAGATATCTGGGTCCTAAGCGAGAGAAGTTGTCAGGAGACTCAGTCTATTTCAGATCGTAGCCGTTCTATGTTTCTCCTTCTAGTTTAAGATTTAGCTTTCTTGTTGTAAGATTTTATTGCTTTGATAGTTTTAGGTGTATTGTCCTATTGATTCATAGAATTTACACTTGCTGTAGGTTTCTAGAGATGTTAAGGAGATGCTAAAGCTTGCAGTTACTCAGGCACAGAAGCGATACAAATTATCTGAATACACAAGTTTTAGTCGAATAACCTCTCCTGGGGATTTAGATCCTTTTGAAGGTAAGACATTCCCCTGTGACCACTTCTCTCTCTTGTTAACACAAATATAAATATAAACACAAACACAGCCATGTCCCGCGCTAAATATGCCCCCCCCCCCCCAAACCCATATTTGCTAGACCTCCATGTAAATATGTGTTTTTATGCCTTTATTGCTTTGTTTGTCTCTTTAACATCAAATCCTAAACTAGGTGAGAGAGCTAGATATGTGGGACTTTGTCAGTAATGTAGTTTTTTCTCTTAATTCTAGGTCTATATGTTGGTGCATTTGGACCTTATGGAACTGAGGTAGTGCAATTAAGGCGGAAGTATGGTAACTGGAATGTAAATGATGCTGAAAAATCCTCTAATGTGGAGTTCTTTGAGTATGTTGAGGCGGTAAAGCTAACAGGGGATATCAATGTGCCTGCTGGCGAGGTTCGATTGTTCACTCTGAAGGTTGTTTTTTTGTATGAAAGCCTAATGAATTGTAAAGCTTTTGATTTTCAGGTGACATTTCGAGCTAAAATAAGTAAAGGAAGTCGCTTGTCCAACAGGGGGATGTATCCAGATGAACTTGGTGTGGTAAGTAACAGTTGGTCGATCATTGTTTTTATGAATGACGTTTCTTATGTTGTGTGGTTAGCATCGTTTTAGCTTTCCCAGGTTGAGCAAAAATACCATTAGTATCTTCAACTTTCCCCCTTTTCATGCTATTTATTATTTGTTCCATGCTCTGATTGCCTTGAACGGTTAAGAGATACTTGCTGAAATTTATAGTTTCTATTAATAGAAGATGTTGATTTTTTATTTTTGTTTTTGAAAGAAGAGAATGTTAAAGTTTTTGTGATCATAATTTTAAAAGAAGACTGTTTAATGGATTCAGCATTGTTTGAGAAATTGTTTTTTCTTTGAAATTGGTAACTTTGTCTATTCCTCAAAAGTCAGTACTATCTTTTACTAAGTTGAGTCTAGTACATCAGTTATGGAGATAGTGTCATTTGAGTATAATTGAATACACCAAAAACATACAATTTAGTTTGACTTTTTGCATACTATTTTCAACACTATCAAAAGCTGTAGAGTTCCTTTCCTTCTATATTGCCCACCATATACTAGCGGGGACAATTCTCCATTTCTCTATTCTTGGATTGCTTTCCTACTTCCTCCCAACTCTGGATTGCTTCTGTGATCTTGGCAGGCAAGGTCCATGACATACCCTTAAGACTCAGGAATAACCTCCATAGTAGGCTTGAGAAATTGCTTTAGACCATCTACATTTTAATATGTCAAAAATTACTTCAGCGCTATAGGCAGATGGAGCTAGCAAGCCAATATGTGCTACTTGGTGATGATTCCTGATGGTTATGATTTTACTCTCCGTTCAAAAGTGCTCGTGTCTCTTTCAGTAATTGATGTCATAGTGATAAATTTCAAATTGTTCATAAATCTTTTTGGTATGAAATTTAGATACAATGAAAAATGACAGTAAAGGAATTCTTTCCATCCGTCTAAGCCTTGGTGAATGGTGACCGTTACCTCTACTGGTATGATGTCCCAGATTCTTTTTGTTGAGTGCCTTGGAGAGTGGAGACAAATATTACTACTATTACAACAACAACATACCCAGTGTAATCCCACAAGTGGTGTATGGGGAGGGTAGTGCTTACACTGTACAAAGATCTATCCTACCTTGGAAGGTAGAGAGACTGTTTCCGATATGCATGGTTTGTTTGTTTTGTGCCCATAAAGCATTAGTTGTTAACCATGATACTGTATTACACTGATGAATGCAACTCTTCTTGGTGAGCCCTAGTTTTAGCATGACTTAGCATCAACTAATTTGGCTATAAGGGGAGTCAGCTATGCATCGAGAATTAGAACAGTCAAATGATCCAGTTTAGATTGCTCCAGAATTATAGGTGTGACTCATAGTGTTTGTTTCTTCAGCTTGCTGGTTACAAGGGTCAAGGAAGAATAGCTGAATATGGTTTCAAAAACCCAAGGTGGGTTGAGGGAGAGCTTCTACAACTCAATGGAAAGGTAATAAAACTGCTGGGAATTCTTGCTTATGTCTTTTTTGCCTTATTTTCTACCTGACAGCTTGTTGAAAGGTGTAAGTTAGAGGTCCTGGTTTCTATTCATTTCTTTGTTAATTTTCCTTAGGGAATGGGGCCACACCTCAAAGGTGCAGACCTTGGCTTTCTTTATGTCATTCCGGAGCACAGCTTTCTTGTACTCTTCAATCGCTTGAAACTACCAGAGTAAAGATACAAGTTGATTGTATGACTTTGGACCCAGTTGTGTGGTTAGGCTAGGAGAAGATCATATTCCTTCTTCCAACAGATTTTTTCCCTTTTGCCAGATAACCTTTCCAGTGTTTTTATCAGAGAGGAATCAACCTTCAATGTGATCGAAAAAGCCAACCCTTTCCCCTCCCTTTTTGCCACTGTGAGTGTTTTGCTGTCCAATAATATGATACATCCTTTCAGTTTTCATCATAAACACTAAAAACTCATATCTTGTAATGCATTTTTTTTTGTTAAGAGATGATGTGGATAATAGTATTCTAGCTGAGTTGAAATTCATATATATTAATGAGTTCCTCTTCTCTACGGTCGTAGAAA</genome_strand>
        <mrna_strand>TTTTCTTAAAGATAAAATACCTGATCTGAAAGTGAAAGTAATGAAAGTCAATATTACTGAAGAAATGACAGATGATGGTGATTCAGTGAAGCAATTTCTGGAAGAAGAAGATGACAACACTATTTCCAGTGAGGAGACAGATGAAACAACTACTGATTTGGATAACATGAATTCCGACCGAGTTACAGTAGGAGGAGATAGCGGCACAAGTGAAGAAGGAAAAACTGTAGATACCAAGCTTTTTGTAGGGGGTGTATTACATAATAAAGAAGACAATCCATTAAAGGATGAGTTTGTTCGTTTCCCTGTTGAGATCAAAGATGTGGCAAAGGATTCCTTTGTGCTTCACATCCCCAAGAGACCTGGAGAACACGATGCTGAAGAAAATACTGCGTCAAGCATTAATGAGGCAGCTATTGCAGCTCAGAGTATCTCTGAACTAATGCCTCCTGATGTGGCCAAGGCATTTTGGAGTTCTGATAAAGCTTCTTCAAAA.........................................................................................................................................................................................................................................................................................................................GTTTCTAGAGATGTTAAGGAGATGCTAAAGCTTGCAGTTACTCAGGCACAGAAGCGATACAAATTATCTGAATACACAAGTTTTAGTCGAATAACCTCTCCTGGGGATTTAGATCCTTTTGAAG..........................................................................................................................................................................................................................................................GTCTATATGTTGGTGCATTTGGACCTTATGGAACTGAGGTAGTGCAATTAAGGCGGAAGTATGGTAACTGGAATGTAAATGATGCTGAAAAATCCTCTAATGTGGAGTTCTTTGAGTATGTTGAGGCGGTAAAGCTAACAGGGGATATCAATGTGCCTGCTGGCGAG........................................................................GTGACATTTCGAGCTAAAATAAGTAAAGGAAGTCGCTTGTCCAACAGGGGGATGTATCCAGATGAACTTGGTGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCTGGTTACAAGGGTCAAGGAAGAATAGCTGAATATGGTTTCAAAAACCCAAGGTGGGTTGAGGGAGAGCTTCTACAACTCAATGGAAAG...........................................................................................................................GGAATGGGGCCACACCTCAAAGGTGCAGACCTTGGCTTTCTTTATGTCATTCCGGAGCACAGCTTTCTTGTACTCTTCAATCGCTTGAAACTACCAGAGTAAAGATACAAGTTGATTGTATGACTTTGGACCCAGTTGTGTGGTTAGGCTAGGAGAAGATCATATTCCTTCTTCCAACAGATTTTTTCCCTTTTGCCAGATAACCTTTCCAGTGTTTTTATCAGAGAGGAATCAACCTTCAATGTGATCGAAAAAGCCAACCCTTTCCCCTCCCTTTTTGCCACTGTGAGTGTTTTGCTGTCCAATAATATGATACATCCTTTCAGTTTTCATCATAAACACTAAAAACTCATATCTTGTAATGCATTTTTTTTTGTTAAGAGATGATGTGGATAATAGTATTCTAGCTGAGTTGAAATTCATATATATTAATGAGTTCCTCTTCTCTACGGTCGTAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324574" ref_strand="+" ref_description="SGN-U324574        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | integral membrane protein, putative, MtN24, Medicago truncatula, EMBL:MTY15290; contains Pfam PF04535 : Domain of unknown function (DUF588); contains 4 transmembrane domains ; similar to putative ethylene responsive element binding protein (GI:22135858) (Arabidopsis thaliana) | chr5:25240421-25242247 REVERSE | Aliases: MQB2.14, MQB2_14(evalue: 1e-18, score=90.9) genbank/nr: gi|15241975|ref|NP_201088.1| hypothetical protein [Arabidopsis thaliana](evalue: 7e-17, score=90.9)">
      <seq>gttgttcaaaaatctctcaataaagatcagatttttcaagaatcccaccatgaaaaatccaaacccagaacccaatttcagtttaaatcatcgaaatcttcataaacagagtagtagtcatttatcaatgtcggatacagagtcacaggtcagtcaaattgattctttccattcaccacttcgatccgagtcgccattacgttctgatgatcctttccctgaaccccaaaactccaaatcaccttcaaaggcaatcgttgcagtagacaagtacttttccccaatcagatcatcgcataaactttcgtcggaaaatttgagttcgccggcgactccaccgccggcggtggaaaggaggtcgccgctggtttatgtaagtagggcggttagggaggatatggcacctggggtgacgaaggtgggtccggtacgtggtggtggtgctgacgtggaagggggagaagttggaggtgagaagcggtcgagggcggctgttgagtcgattcttgaaaggtcgcaaagggatgttatgatgaacagggtggcgttagggtttagggtttgtgaggtcattttttgcttgatttcgttttcggttatggcagctgataaaactcaaggttggactggtgattcatttgatcgttacaaagaatacaggtgaccattttctgcttacatctatacctctgtttatgttggtatttttgtttcaatggtaaagaaagcatttttaagtggagaaataaattttgcacagaagcagtagtctgtgcaccacagccgatagattttagctgaaatgtgaatattttgtttccttttatcagaagcaaatacagtcaaacctcttaattacaacatggttgttataaagaacatactataatatagcatacttctttccattgatagtcttacttttctttttagtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0197N20.1" temp_strand="+" temp_description="C06HBa0197N20.1  AC211062.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0197N20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25490" stop="27025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25790" g_stop="26725" g_length="936"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="936" r_length="936" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0197N20.1" gen_strand="+" ref_id="SGN-U324574" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>936</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0197N20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25790" e_stop="26725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTCAAAAATCTCTCAATAAAGATCAGATTTTTCAAGAATCCCACCATGAAAAATCCAAACCCAGAACCCAATTTCAGTTTAAATCATCGAAATCTTCATAAACAGAGTAGTAGTCATTTATCAATGTCGGATACAGAGTCACAGGTCAGTCAAATTGATTCTTTCCATTCACCACTTCGATCCGAGTCGCCATTACGTTCTGATGATCCTTTCCCTGAACCCCAAAACTCCAAATCACCTTCAAAGGCAATCGTTGCAGTAGACAAGTACTTTTCCCCAATCAGATCATCGCATAAACTTTCGTCGGAAAATTTGAGTTCGCCGGCGACTCCACCGCCGGCGGTGGAAAGGAGGTCGCCGCTGGTTTATGTAAGTAGGGCGGTTAGGGAGGATATGGCACCTGGGGTGACGAAGGTGGGTCCGGTACGTGGTGGTGGTGCTGACGTGGAAGGGGGAGAAGTTGGAGGTGAGAAGCGGTCGAGGGCGGCTGTTGAGTCGATTCTTGAAAGGTCGCAAAGGGATGTTATGATGAACAGGGTGGCGTTAGGGTTTAGGGTTTGTGAGGTCATTTTTTGCTTGATTTCGTTTTCGGTTATGGCAGCTGATAAAACTCAAGGTTGGACTGGTGATTCATTTGATCGTTACAAAGAATACAGGTGACCATTTTCTGCTTACATCTATACCTCTGTTTATGTTGGTATTTTTGTTTCAATGGTAAAGAAAGCATTTTTAAGTGGAGAAATAAATTTTGCACAGAAGCAGTAGTCTGTGCACCACAGCCGATAGATTTTAGCTGAAATGTGAATATTTTGTTTCCTTTTATCAGAAGCAAATACAGTCAAACCTCTTAATTACAACATGGTTGTTATAAAGAACATACTATAATATAGCATACTTCTTTCCATTGATAGTCTTACTTTTCTTTTTAGTCG</genome_strand>
        <mrna_strand>GTTGTTCAAAAATCTCTCAATAAAGATCAGATTTTTCAAGAATCCCACCATGAAAAATCCAAACCCAGAACCCAATTTCAGTTTAAATCATCGAAATCTTCATAAACAGAGTAGTAGTCATTTATCAATGTCGGATACAGAGTCACAGGTCAGTCAAATTGATTCTTTCCATTCACCACTTCGATCCGAGTCGCCATTACGTTCTGATGATCCTTTCCCTGAACCCCAAAACTCCAAATCACCTTCAAAGGCAATCGTTGCAGTAGACAAGTACTTTTCCCCAATCAGATCATCGCATAAACTTTCGTCGGAAAATTTGAGTTCGCCGGCGACTCCACCGCCGGCGGTGGAAAGGAGGTCGCCGCTGGTTTATGTAAGTAGGGCGGTTAGGGAGGATATGGCACCTGGGGTGACGAAGGTGGGTCCGGTACGTGGTGGTGGTGCTGACGTGGAAGGGGGAGAAGTTGGAGGTGAGAAGCGGTCGAGGGCGGCTGTTGAGTCGATTCTTGAAAGGTCGCAAAGGGATGTTATGATGAACAGGGTGGCGTTAGGGTTTAGGGTTTGTGAGGTCATTTTTTGCTTGATTTCGTTTTCGGTTATGGCAGCTGATAAAACTCAAGGTTGGACTGGTGATTCATTTGATCGTTACAAAGAATACAGGTGACCATTTTCTGCTTACATCTATACCTCTGTTTATGTTGGTATTTTTGTTTCAATGGTAAAGAAAGCATTTTTAAGTGGAGAAATAAATTTTGCACAGAAGCAGTAGTCTGTGCACCACAGCCGATAGATTTTAGCTGAAATGTGAATATTTTGTTTCCTTTTATCAGAAGCAAATACAGTCAAACCTCTTAATTACAACATGGTTGTTATAAAGAACATACTATAATATAGCATACTTCTTTCCATTGATAGTCTTACTTTTCTTTTTAGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323985" ref_strand="+" ref_description="SGN-U323985        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | basal transcription factor complex subunit-related, similar to TFIIH basal transcription factor complex p34 subunit (Basic transcription factor 2 34 kDa subunit) (BTF2-p34) (General transcription factor IIH polypeptide 3) (SP:Q8VD76) {Mus musculus}; contains Pfam PF03850: Transcription factor Tfb4 | chr1:6311476-6313924 REVERSE | Aliases: F15H18.15, F15H18_15(evalue: 3e-21, score=98.2) genbank/nr: gi|18394597|ref|NP_564050.1| expressed protein [Arabidopsis thaliana] gi|21537277|gb|AAM61618.1| unknown [Arabidopsis thaliana](evalue: 2e-19, score=98.2)">
      <seq>ttgacttccgtgcatcgtgcttttgccataaaaacacgattgacatgggtttcatatgctctgtttgtttatcaatattctgcaagcatcacaagaaatgctcaacttgcggatcaaattttggggaggcacgaaagcaggatccctcagcctcggatcagaggaggacttcatatggtagttgaatagataatcctaaagcctatttaacacctcaggccattgccactactgtgtttcaatagatttcttatgatatgaacttccagatggttatattaaagacgagtccaaactggactaatgatactagactatgtttcagcagcaggaagaggaaattaaggaaagagggagcttgacctttttccagtgtcaagaatctccttctctaggtgaaggaatacataggatgattctaatgaacttgtctgtattttatgaacttccaatataaaaatgttattgtccaagtgaaaatttgagtagaattccaaaacaagttaaaaggtacaaactgcaaatacatcaaactgttacctgaactcaagatttgattatgtctcttaatgaaaatgtttcacattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0197N20.1" temp_strand="-" temp_description="C06HBa0197N20.1  AC211062.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0197N20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30463" stop="28379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30163" g_stop="30068" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="112" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30067" i_stop="29158" i_length="910">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29157" g_stop="28686" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="584" r_length="472" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="588" polyA_stop="623"/>
      <MATCH_line gen_id="C06HBa0197N20.1" gen_strand="-" ref_id="SGN-U323985" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0197N20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30163" e_stop="30068"/>
          <exon e_start="29157" e_stop="28686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTTTTGCCATAAAAACACGATTGACATGGGTTTCATATGCTCTGTTTGTTTATCAATATTCTGCAAGCATCACAAGAAATGCTCAACTTGCGGGTGAGTATTCATTATAAACTTATTGAAGTGTCTCATTGATGAACTTCTCTTTTTTTCATTAATTATGCTGCATTAAGAATAATGTTCCGTCCAAAGAGTTCACATGAACTTGTGATCATGTCAATGTTACTGTCAGTACTGGTTACTTTTTGATCAGTTAGGAGTTCTATTGCTGTACACACAAGGAGTTGAGGTATTCTAATGAACAGCACTCTTATATTCTAATAGGGAGAGTTGCCATGATTTACATGCCCTAGCTTCATTACATCAAGGTTTTAACACTAACGCTAAAAGATAAATACATATTTTCAATCTATGTACACTTATGTTTTCATTCAAAATCTCTAGCCTTCTCACCTTCTAGACCGCCCACCAAATACGAGAAGGGAACTAGAAGTATTGGTTATTGGTTATAGTTTCATATTATTTACAAGGACAAGGGTGGCATGGACATAATAATGTGTATGCTAGTTATGTGATTTTCACTTATTTGTTTTGCGACATAATATCTGCTAGTTTTCTGGAAAGGTTGAACTCTGCACAGCAATTATAGGGATAATAGGTGCAGTTAAAAGGTCCTATTGAAAAACATAGAAGCTGAGGCAATGTTACCTACCTTGCACTATGTTAACTATCTGAATTTCTTGAGAGAAGATACATGAACATCACTCACCTAGTAAGTGCTAATGGATAACTTGTCATTACATTTTAAGGATTCTTTTCTTGTTTCCTGAGAACATTTCAGACAAAAACCGAAGACACAGGAAAAAGGGTTGCTTGATTCCATTTTAATATTGTAGAAGTTTATCTGTAGTAGCATCCTAACTGTTTTTCAACCACTCACTCCGCTGATAACTCAATTCATTGAGTTTGGGTATCCTAATTTTTAAGTTCATGCCATAAAATGCAGATCAAATTTTGGGGAGGCACGAAAGCAGGATCCCTCAGCCTCGGATCAGAGGAGGACTTCATATGGTAGTTGAATAGATAATCCTAAAGCCTATTTAACACCTCAGGCCATTGCCACTACTGTGTTTCAATAGATTTCTTATGATATGAACTTCCAGATGGTTATATTAAAGACGAGTCCAAACTGGACTAATGATACTAGACTATGTTTCAGCAGCAGGAAGAGGAAATTAAGGAAAGAGGGAGCTTGACCTTTTTCCAGTGTCAAGAATCTCCTTCTCTAGGTGAAGGAATACATAGGATGATTCTAATGAACTTGTCTGTATTTTATGAACTTCCAATATAAAAATGTTATTGTCCAAGTGAAAATTTGAGTAGAATTCCAAAACAAGTTAAAAGGTACAAACTGCAAATACATCAAACTGTTACCTGAACTCAAGATTTGATTATGTCTCTTAATGAAAATGTTTCAC</genome_strand>
        <mrna_strand>GTGCTTTTGCCATAAAAACACGATTGACATGGGTTTCATATGCTCTGTTTGTTTATCAATATTCTGCAAGCATCACAAGAAATGCTCAACTTGCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAATTTTGGGGAGGCACGAAAGCAGGATCCCTCAGCCTCGGATCAGAGGAGGACTTCATATGGTAGTTGAATAGATAATCCTAAAGCCTATTTAACACCTCAGGCCATTGCCACTACTGTGTTTCAATAGATTTCTTATGATATGAACTTCCAGATGGTTATATTAAAGACGAGTCCAAACTGGACTAATGATACTAGACTATGTTTCAGCAGCAGGAAGAGGAAATTAAGGAAAGAGGGAGCTTGACCTTTTTCCAGTGTCAAGAATCTCCTTCTCTAGGTGAAGGAATACATAGGATGATTCTAATGAACTTGTCTGTATTTTATGAACTTCCAATATAAAAATGTTATTGTCCAAGTGAAAATTTGAGTAGAATTCCAAAACAAGTTAAAAGGTACAAACTGCAAATACATCAAACTGTTACCTGAACTCAAGATTTGATTATGTCTCTTAATGAAAATGTTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326344" ref_strand="+" ref_description="SGN-U326344        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | basal transcription factor complex subunit-related, similar to TFIIH basal transcription factor complex p34 subunit (Basic transcription factor 2 34 kDa subunit) (BTF2-p34) (General transcription factor IIH polypeptide 3) (SP:Q8VD76) {Mus musculus}; contains Pfam PF03850: Transcription factor Tfb4 | chr1:6311476-6313924 REVERSE | Aliases: F15H18.15, F15H18_15(evalue: 4e-83, score=304) genbank/nr: gi|18394597|ref|NP_564050.1| expressed protein [Arabidopsis thaliana] gi|21537277|gb|AAM61618.1| unknown [Arabidopsis thaliana](evalue: 3e-81, score=304)">
      <seq>ctacacctgaccggtgaattaaggtttattccaccggcggccatgacaccggtttcatcaaagctttacgcagacgatgtgagcctattgatggttctggttgatacaaatccctacttctggagctcaatgaagaacactgccttcacattccctaaattcatatcacacgttcttgctttcttgaattcgatacttttactgaatcagatgaaccaagtagttgtgattgcaactgggtacaattcatgtgattatgtattcgattcgtctacctcgtcaatgcaaagagctgagtgtttgttggagaaactggaggattttgtggataaagatgagtccttgagtcaagaagactctgttgatggagttgggttttcgctgctttctggtgcactttctatggctttgtgctacattcaacgggtatttcgttcagggcctcttcatccacaacctcggatattgtgtctgcatggatctccagatgggccgggacaatatgttgcagtcatgaattcaattttctcagctcaacgttcaatggtacccattgattcatgtgtaataggatctcagcattctgcttttcttcagcaggcttcttacataactggtggtgtatatttgaaaccccaagtatcagatggactgtttcaatatctctctacagtttttgcgactgatttacattctcggagcttcttgcaacttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0197N20.1" temp_strand="-" temp_description="C06HBa0197N20.1  AC211062.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0197N20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34408" stop="30624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34108" g_stop="34036" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34035" i_stop="33933" i_length="103">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33932" g_stop="33835" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="171" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33834" i_stop="33726" i_length="109">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33725" g_stop="33482" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="415" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33481" i_stop="33128" i_length="354">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.288" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33127" g_stop="33081" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="462" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33080" i_stop="32351" i_length="730">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32350" g_stop="32313" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="500" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32312" i_stop="32238" i_length="75">
            <donor d_prob="0.708" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32237" g_stop="32192" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="546" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32191" i_stop="32031" i_length="161">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32030" g_stop="31977" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="600" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="31976" i_stop="31873" i_length="104">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="31872" g_stop="31804" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="669" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="31803" i_stop="30971" i_length="833">
            <donor d_prob="0.757" d_score="1.00"/>
            <acceptor a_prob="0.225" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="30970" g_stop="30924" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="716" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0197N20.1" gen_strand="-" ref_id="SGN-U326344" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0197N20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34108" e_stop="34036"/>
          <exon e_start="33932" e_stop="33835"/>
          <exon e_start="33725" e_stop="33482"/>
          <exon e_start="33127" e_stop="33081"/>
          <exon e_start="32350" e_stop="32313"/>
          <exon e_start="32237" e_stop="32192"/>
          <exon e_start="32030" e_stop="31977"/>
          <exon e_start="31872" e_stop="31804"/>
          <exon e_start="30970" e_stop="30924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACACCTGACCGGTGAATTAAGGTTTATTCCACCGGCGGCCATGACACCGGTTTCATCAAAGCTTTACGCAGGTCTGTCTCCTTCTCTGTCTGTGTAGCTGAAGTATGCAATAAGTACATGTTAGTGGAATAAGAGGAAAATGTGTTAAAATTAATCTCTTTTGAATACTTTCAGACGATGTGAGCCTATTGATGGTTCTGGTTGATACAAATCCCTACTTCTGGAGCTCAATGAAGAACACTGCCTTCACATTCCCTAAATTCATATCACACGTAAAGACCCCTAAAACCCAAAATTTGTTTTTTTTTTTAAAAAAAAATGAATAGTTTTGTGTTCTCCATTTGTTGAATTTTGATGCTGGAATGTATGGGGGAAATGCAGGTTCTTGCTTTCTTGAATTCGATACTTTTACTGAATCAGATGAACCAAGTAGTTGTGATTGCAACTGGGTACAATTCATGTGATTATGTATTCGATTCGTCTACCTCGTCAATGCAAAGAGCTGAGTGTTTGTTGGAGAAACTGGAGGATTTTGTGGATAAAGATGAGTCCTTGAGTCAAGAAGACTCTGTTGATGGAGTTGGGTTTTCGCTGCTTTCTGGTGCACTTTCTATGGCTTTGTGCTGTATCCTCAATCAGTTCATGTCTGTTGGTTTTTTTTATATTCTTATTGAAGTGAAATTTTAATGATTTTTATTGAGATGCAGAACCAAAATTTGGACTTGCTAGGTTTATTCTTTGAAGCTCTTAGCACTGAATTTATTGACTGTTGAAATTCTAGATACGAAATCTAATCTTTTTGGTTAGATTTTAGTTTTTCTTACTTGTGTATTCATGTTCCGTATTTGAAAATACTGAGTTTGGTTGAACCCGTAGCTATTAGCTATATCTGCCACTGGTTTTTATTTGTTATTGTGCATAGCTTTGCATTCACGTTTGTTTAGAGGAAGTGTTTCTCTTGACCTGTGTGCACTGTTAGACATTCAACGGGTATTTCGTTCAGGGCCTCTTCATCCACAACCTCGGGTAAGTTCCTTATTTTACAAGAAACTGAAAATGGGTTCTTCTGGGATTTTGAATTGATGGAATTTGTTATGAGAATTTCTACTTGTATTATTTTGTTTATCCAGTTACATTTATAGATTTTATGCTTATGTGAAATTTTCCTGGTCGATCCATTTGGGATCGTAAGCTTTAGCATTTACAAGCATAACATGTTATTATGCCAAATACCTTATCCATGGAAATATCTCTCGTCCAAGGGGAAAAAGAACTTCGAGTTTTTTCCAGTGATTTCTTTGGCCTTTTACGTTTCATGTTAATTCTGATAGTGTTTCTTAACCCCAAAGGTGCATTTAAGGGGGTTTGGTGAGGTAATACTTTAAGTTATTCTATGTTTTATGTACCTTAAACAAAACCATCAATTAAACTTCAATGTGCCCTGATTTATTTGTACTGCAATTTTTATCCAATGGTATAGTGAAACTACCATTCCCATCCTTATCAAGAAAAGAAAAAACTAGCATTCCCGATGAAATGCCATTTCTGGTCCCATTTCATTGGCAATTTCTTAATGTGATATTATCAGATATTACTACATCATTTTTGTGTTTGTTAATTTGATCATTTATCAGTAAGGTAGTTGTTAGGAAAAAAAAATCTGTCTTCTCTTGTTTTATACTTTAAAATTTGATCCGTTTTTGTTATGTTGGATATGAATATTGATGCTAAGAAAATGTGCTTGAAATTATGGCAGATATTGTGTCTGCATGGATCTCCAGATGGGCCGGGACAGTATGTTGGATCTTCACAGCTTCTACAATCTTCTCATTGTTAGGTTCTCTGCTGAAACATGTTCTTTTTTTGCAGATATGTTGCAGTCATGAATTCAATTTTCTCAGCTCAACGTTCAATGGTATATAGGATTTAACAATTCTTTCCTTCAATTTTCCTTCTTGATTAATTAGAAAGTTGTCACATGTCTTCATAAATGTAGAATTTTCAAAATTAGGGATCGGGACTTAGATTTCCATATTGTGATCCTACTCTAAGAAATGCAATGCGTTTTTATTGCAGGTACCCATTGATTCATGTGTAATAGGATCTCAGCATTCTGCTTTTCTTCAGCAGGTAGCATTTCTATACCTGAAAGTTCTGGTTGAAAATCTATTCCTTCTCAGCATGAGTTATTTTCTGGCTCACTGATCTTATGGTGCATATCTATCTGGGAACAGGCTTCTTACATAACTGGTGGTGTATATTTGAAACCCCAAGTATCAGATGGACTGTTTCAATATCTCTCTGTAAGTGTTATTAAAATTATTAATACTAAGTTGTCTCTCTTTGTCAAAAAAAATACTAAGTTGTCTCTAGCTTAGCATTTTAACTTGTCAATAGCATGGATCCAACATTGAACATCTACGGTTGTCTCCAGTGCTGCCTTCAGACATTAGTTTCTATCTGATGTGTAAGCATGTTGAACAAGTCACTATACTTTGATTTGTTTAGTGTATGCAATTTTTGTTTCCAAGGAGCTTACACTAAAAAGACCTTCCAAAAGTTTGACCTATTTTAAATCTGGTATTAAATATTTAATATATGTACTACTATTGTTGGTGTTGGAGATACAGTGATCAACCAAAAGGCTATGACTGAAAGTACCAATGTACTCTTTGTGGACTTAGAAAATCTTCTCCAAATGTCTTCTGGACTGCCGCAGTCCGATGGCTTCTCCTTTTGCCCTCTATAGTGAACTTCTCATGCTTTGTCTCTGTGAGTAGGAGATAATAATATCATGAATGAAGATGTGATTGTTGTATGACCTTATTTTCAACATTTCGTTCACGTTTCATGGAATGCAATAGACCCATTGCTAAAACCACTTCCACGACTAGAATACAGTATCTACACCAGAAGTTATATTGAAATTGATTTCTTATTCAAGATGTTCTTTCACATCAACAAGTTGCATATTTCTGTCTGATGCGGTTGGTGTACTGTGCTTTCATTCACCTGGTGTGATCTGTAAGATGGTTAAATGCCTTGTTTTATTTTTGAGATGTTTTATTTGTAGAATGTCTTGTCTTGAGATCTAATTTTCCGTTTGAAAATACTGACAAGACTGTAATAAATACAGACAGTTTTTGCGACTGATTTACATTCTCGGAGCTTCTTGCAACTTCC</genome_strand>
        <mrna_strand>CTACACCTGACCGGTGAATTAAGGTTTATTCCACCGGCGGCCATGACACCGGTTTCATCAAAGCTTTACGCAG.......................................................................................................ACGATGTGAGCCTATTGATGGTTCTGGTTGATACAAATCCCTACTTCTGGAGCTCAATGAAGAACACTGCCTTCACATTCCCTAAATTCATATCACAC.............................................................................................................GTTCTTGCTTTCTTGAATTCGATACTTTTACTGAATCAGATGAACCAAGTAGTTGTGATTGCAACTGGGTACAATTCATGTGATTATGTATTCGATTCGTCTACCTCGTCAATGCAAAGAGCTGAGTGTTTGTTGGAGAAACTGGAGGATTTTGTGGATAAAGATGAGTCCTTGAGTCAAGAAGACTCTGTTGATGGAGTTGGGTTTTCGCTGCTTTCTGGTGCACTTTCTATGGCTTTGTGCT..................................................................................................................................................................................................................................................................................................................................................................ACATTCAACGGGTATTTCGTTCAGGGCCTCTTCATCCACAACCTCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTGTCTGCATGGATCTCCAGATGGGCCGGGACA...........................................................................ATATGTTGCAGTCATGAATTCAATTTTCTCAGCTCAACGTTCAATG.................................................................................................................................................................GTACCCATTGATTCATGTGTAATAGGATCTCAGCATTCTGCTTTTCTTCAGCAG........................................................................................................GCTTCTTACATAACTGGTGGTGTATATTTGAAACCCCAAGTATCAGATGGACTGTTTCAATATCTCTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTTTTTGCGACTGATTTACATTCTCGGAGCTTCTTGCAACTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342702" ref_strand="+" ref_description="SGN-U342702        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | exonuclease-related, similar to Exosome complex exonuclease RRP40 (EC 3.1.13.-) (Ribosomal RNA processing protein 40) (p10) (CGI-102) (Swiss-Prot:Q9NQT5) (Homo sapiens) | chr2:10808393-10810801 FORWARD | Aliases: None(evalue: 8e-23, score=104) genbank/nr: gi|57899790|dbj|BAD87535.1| ALM beta-like [Oryza sativa (japonica cultivar-group)] (evalue: 1e-21, score=107)">
      <seq>gtttgtcacggatgctgctgagctcaccaacatgtccagttcttgaaggtcttggaaagaagctagcttttgagatagctgttggtttaaacggccgtgtgtgggtaaatgctgagcaccaatcgtcaatcatccttgctgcgaatgcaataatgaactctgagtccttgacctcagtgcaacaaaagattatggtggagaagctgcttgacagagtaaattgaactggatttagcatttcgaccacatagcctctagcagccaaatgatgtgatggataatgtgattgtaaccagaccgcggaacataaatgttacacaagcttcttcctcatggacttttagcctgcggctttccagttcatcactcatgaaaccgtcctgcttgtttatgtgattcttgtgagagtatagagaaaagatgtaacattattagcagaattgattgtccatgcaaacattttgtccatggtgttgtatttattcttcaaatcaatcttctgtccctctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0197N20.1" temp_strand="+" temp_description="C06HBa0197N20.1  AC211062.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0197N20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38599" stop="39827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38734" g_stop="38746" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38747" i_stop="38910" i_length="164">
            <donor d_prob="0.880" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38911" g_stop="39001" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="104" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39002" i_stop="39115" i_length="114">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39116" g_stop="39531" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="520" r_length="416" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0197N20.1" gen_strand="+" ref_id="SGN-U342702" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0197N20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38734" e_stop="38746"/>
          <exon e_start="38911" e_stop="39001"/>
          <exon e_start="39116" e_stop="39531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGTCACGGATGTAAGTTTCTATTTTGGCTTTCACTTGCAACAGTGAAATCTTTGGTTTAGATTTTACTGTAACCTTAACTTGCTCATCAGAATAGAAACAAGAAAAAGGGTTGAAGGTCTTGTTGCATGCTATTCCCTTAGCTACATGTTCATCTTTTTGTATTTTTTTCCTAGGCTGCTGAGCTCACCAACATGTCCAGTTCTTGAAGGTCTTGGAAAGAAGCTAGCTTTTGAGATAGCTGTTGGTTTAAACGGCCGTGTGTGGGTATATATAAATCTGTTCATTCTCTATTTATTGTGGTTGATCCGTCCATCTCTTTCTAAGTCTCAAATACTTTTGCCTCTATTCTCAATTTAGATACTTGTTCTGCTGTAATAGGTAAATGCTGAGCACCAATCGTCAATCATCCTTGCTGCGAATGCAATAATGAACTCTGAGTCCTTGACCTCAGTGCAACAAAAGATTATGGTGGAGAAGCTGCTTGACAGAGTAAATTGAACTGGATTTAGCATTTCGACCACATAGCCTCTAGCAGCCAAATGATGTGATGGATAATGTGATTGTAACCAGACCGCGGAACATAAATGTTACACAAGCTTCTTCCTCATGGACTTTTAGCCTGCGGCTTTCCAGTTCATCACTCATGAAACCGTCCTGCTTGTTTATGTGATTCTTGTGAGAGTATAGAGAAAAGATGTAACATTATTAGCAGAATTGATTGTCCATGCAAACATTTTGTCCATGGTGTTGTATTTATTCTTCAAATCAATCTTCTGTCCCTCTAAACAGATTTA</genome_strand>
        <mrna_strand>GTTTGTCACGGAT....................................................................................................................................................................GCTGCTGAGCTCACCAACATGTCCAGTTCTTGAAGGTCTTGGAAAGAAGCTAGCTTTTGAGATAGCTGTTGGTTTAAACGGCCGTGTGTGG..................................................................................................................GTAAATGCTGAGCACCAATCGTCAATCATCCTTGCTGCGAATGCAATAATGAACTCTGAGTCCTTGACCTCAGTGCAACAAAAGATTATGGTGGAGAAGCTGCTTGACAGAGTAAATTGAACTGGATTTAGCATTTCGACCACATAGCCTCTAGCAGCCAAATGATGTGATGGATAATGTGATTGTAACCAGACCGCGGAACATAAATGTTACACAAGCTTCTTCCTCATGGACTTTTAGCCTGCGGCTTTCCAGTTCATCACTCATGAAACCGTCCTGCTTGTTTATGTGATTCTTGTGAGAGTATAGAGAAAAGATGTAACATTATTAGCAGAATTGATTGTCCATGCAAACATTTTGTCCATGGTGTTGTATTTATTCTTCAAATCAATCTTCTGTCCCTCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315992" ref_strand="+" ref_description="SGN-U315992        Tomato 200607 #1 [17 ESTs aligned] arabidopsis/peptide: | Symbol: None | peroxisomal protein (PEX14), identical to PEX14 (Arabidopsis thaliana) GI:11094252; contains Pfam profile PF04695: Peroxisomal membrane anchor protein (Pex14p) conserved region; supporting cDNA gi:11094253:dbj:AB037539.1: | chr5:25237391-25241015 FORWARD | Aliases: MQB2.13, MQB2_13(evalue: 2e-76, score=283) genbank/nr: gi|30697742|ref|NP_201087.3| (PEX14) protein [Arabidopsis thaliana] gi|10177459|dbj|BAB10850.1| gene_id:MQB2.13~unknown protein [Arabidopsis thaliana] gi|11094254|dbj|BAB17668.1| AtPex14p [Arabidopsis thaliana](evalue: 1e-74, score=283)">
      <seq>tcgagatgagcaaaatccacttgtgggttctgacatactatcatcaataatcaattcgtcttgagttcaataggagttggataacatggcgtctcaatcagattctccacccaactccgtaaacgagaatacccagaatccagcttcgcaaccagcagctgaaaatcatcaaggtcccaagcctgaggctgcaagtgggagctctccagcttctgtgtttgtaaactcggaaccaattcgggaggaccaagtccagaatgctatgaaatttctttcacatccaaaagttaggggatctccagtcatgtataggcgttcttttcttgagaggaaggggcttacaaaggaggaaattgacgaggcctttcgtcgagttcctgatcctaccccaactgttactagcacacagccagttgctgctaatgaagatgggacacagaagccttcatcgactagtacatcacaggctgctttacaaaatctgcagccagcgtcagctccgagcaatagcatgaaaaaaatggggtatctctctcatttccattggactcatgcagttattgctgtaggtctactcgctgcttcaggagctggaacagctgtacttttcaagaaatctattattccccggttgaagtcttggatacgcaaggttgtaatggatgaagaagaagatgaaaaaggtattgtcaagggaaaaccaagtttagcagaagaagctgctgttgctgcaaaagctgcagcagctgctgctgctgatgttgcccgagcaagccaggagatgttggcatcaaaatccgaagagaaaaggtattttgaggagctgacaagcctgctaaactatcaagtacgtgagatgaaatcaatgacaagtgctatagagaaactggaagggcaaagtactacttctggaagaatacctgtttcggaactagatgatcgaagaatttcagttactcaatctaggcaatcttatgccaatggaaaagtaaatggtgatgcacattcagtgagatctttgtcaccacctgcatctgttgaaccatctgctgcaccccatccaaagtcttatatggagattatggctatggttcaaagaggagagaagcctcccaacatccgagatataaatgatcagccaccaaatcctaaccagcctgtacctgatcgtgttgcagcaaagcctaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0197N20.1" temp_strand="+" temp_description="C06HBa0197N20.1  AC211062.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0197N20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39741" stop="45777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40041" g_stop="40105" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40106" i_stop="40221" i_length="116">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40222" g_stop="40299" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="143" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40300" i_stop="41046" i_length="747">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.469" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41047" g_stop="41282" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="379" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41283" i_stop="41384" i_length="102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41385" g_stop="41433" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="428" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41434" i_stop="41539" i_length="106">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41540" g_stop="41724" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="613" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41725" i_stop="42347" i_length="623">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.362" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42348" g_stop="42537" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="803" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42538" i_stop="42711" i_length="174">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42712" g_stop="42801" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="804" r_stop="893" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="42802" i_stop="44021" i_length="1220">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="44022" g_stop="44095" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="894" r_stop="967" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="44096" i_stop="44188" i_length="93">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="44189" g_stop="44231" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="968" r_stop="1010" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="44232" i_stop="44328" i_length="97">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="44329" g_stop="44396" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1011" r_stop="1078" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="44397" i_stop="45279" i_length="883">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="45280" g_stop="45324" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1079" r_stop="1123" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="45325" i_stop="45411" i_length="87">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="45412" g_stop="45477" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1124" r_stop="1189" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0197N20.1" gen_strand="+" ref_id="SGN-U315992" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1189</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0197N20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40041" e_stop="40105"/>
          <exon e_start="40222" e_stop="40299"/>
          <exon e_start="41047" e_stop="41282"/>
          <exon e_start="41385" e_stop="41433"/>
          <exon e_start="41540" e_stop="41724"/>
          <exon e_start="42348" e_stop="42537"/>
          <exon e_start="42712" e_stop="42801"/>
          <exon e_start="44022" e_stop="44095"/>
          <exon e_start="44189" e_stop="44231"/>
          <exon e_start="44329" e_stop="44396"/>
          <exon e_start="45280" e_stop="45324"/>
          <exon e_start="45412" e_stop="45477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGATGAGCAAAATCCACTTGTGGGTTCTGACATACTATCATCAATAATCAATTCGTCTTGAGGTAATTCGGTGCCTATTTCTATGTTAACAAAAAAAAAGTTTGGATTTTTTTTCCTTTTCTTCTCTTCTCCTCTAATCTTGGCATGTTCTTTTTCTTGTACTGTTCTTGAAATTCAGTTCAATAGGAGTTGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAGGTACCCTTTTAGTTGCTTTTCTTTGATGAAAGTTGTTGCTCTGCTACTGTTTAGTTGATTCTTGAATATCAGACAGAAATAGATCGTGATGTTTAGTTATTGCTGCTACTTTGTTATCTGAAAAGAAGTATTTGCCATAAAGATCGAATCTTTTTGGACTTTATGATGTTTGTGCCTTTTTGTCTTTAACTGGGATAGGAGCATGTAATTGTGCTTCTTTTTTCTTTTATGGATGGTTGCTACTTTTGGTTTGTTAAGCAATAAAGTAGTACTAACTTGATATTGTTACATCTAATGATCATTTGTTTAATACTGTAGCTTGTGTTGTTAGAAGCCGTATGATTTTGGTGTAGTGCAAATCTTCGAGATAATTAGGTTTTTTCTGTGTTCTTAAACATTTACCTTAGCAACTAATGACAGGTTTAAGCCTAATGTTCTTAAATAAATGGATTGATTTGATATCCAGTAACTGTATATAATGTGCATATTGATAACTAGGTGATTTTGTTTTCAGTGTGAGGCTTCTGAGGATGGTAGGTTCATTAACTAGATAATTTTCTCTACGAGGCTTTGCACAATCATAGATTAGAATGCACCAGCAAACCCTCTCAACAAGAGAAACGATGTTGTATGAAATAGATAATTTGATGCTATATCGTGATCCAAACTTAAATTTCTAATTTGAAGCAACAGAGAATTTCATGATATATCGTAATCCAAGCTTAAATTTCTAATTTGAAGCAACAGCTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGGAGGAAATTGACGAGGCCTTTCGTCGAGTTCCTGTAAGCCACATTTAGATTTTTTACATTTGATATTGTCTTAAATGTAACTGTAATATCTACATGAAATTTAAGATATATATTGATTTTGTGCCTAAATTACAGGATCCTACCCCAACTGTTACTAGCACACAGCCAGTTGCTGCTAATGAAGGTAATTCATATTGTTCTCGAAATAAGTTTGGCCTTTTATTCTTTTCTTGAGATTGATACTGTTTGGAGCCTATGCTTGTCATGTTGTCCTGATATATTGATGACAGATGGGACACAGAAGCCTTCATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAGGTATTGCATAGTAAAGAGCTTTCTATTTATCATGCCAATCCGTACCATATTGTACTTTTTCTTCTGTCTATTCCCCATTTCTTCAGTGTAGATTTATTTTTCATAAGCGAGACATCTCAAACTTTTATTTGTGGTGGTTCAGTTTATTATTAGTTTAGTAAATTGGTTGAACTTATTGACCGAAACAAAGAAAAGAAAAGAAAAGAAAAAAAGCCTAATGATTTCATACAAATTACAAAAGGTGGTATTTGATTAATGATGGGTATCTCATAGATGTAACTCTGGCCTCTCATATGTGAGGAGCTTGCATGGTGATGGAAAATTTGACCACGCCTATATACTCTAGATGCAGGTCATTTCAAAAAAGCGTGTACCTTAACTGAAGAACTATTTGAAGATTTTTAGTTAACCCTGTTCTGACTTTTGTGTTCCTTCTTTCTTTATTATAAATATCCCTGTTATGAAGATTTTCTTCAGATTTATTTGGTCTCCTCCGATGCTTTATCTTATTAGATCCATCTCTAAAGTAGGATTCTGGTGCTTATGACAATCTATTGGAAACTTTTCTCATGGACTACTCACTATATTTATCACCCACTGTTAAGTGACACGTCCATTTGCAGAAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATGAAAAAGGTATTGTCAAGGGAAAACCAAGTTTAGCAGAAGAAGCTGCTGTTGCTGCAAAAGCTGCAGCAGCTGCTGCTGCTGATGTTGCCCGAGCAAGCCAGGAGATGTTGGCATCAAAATCCGAAGGTTGGTAATGTAAATTCTTATGTAATAACAAGTTAAGAACTGGATCTGAAATAAAATAAACTGAAATATTGTTCAACATTGGTGACTTAAATCTTTCATCCTCTTTCTTATCCAGTGCTTATTTTTTTTTACCATCGATAATCATGTTGTGATTTAACTTGTGTTCCTCCACAGAGAAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAGGTGTGCCTCTTCATTTGCTCTTGAAGTAGAAATTCTCTACTTAATCAATAGGTTTTTGCATATTGACCATTTTTTGCTAGTACATGAGATGAAATCAGTGACAAGTGCTATAGAGAAACTGGAAGGTGTGCCTCTTCATTTGCTCATGAAGTAGAAATTCTCTACTTAATCAATAGATTTTTTGCATATTGACCATTTTTTGCTTTTAGGGGGTCGTGTAATTTAAAAAGGATGTGTTATGACACAAAAGGGGGTTAGAAAGGAGGTAAATTTTGGCGACCTGCTGAGAAGTAATTAATAACTTGATTGTTCATAACTGAAAGAGCAATGGAGAAAGATAGAGATAATAAATTGTGCATAACCTGTATAATTATAGTTTGCTGATTCCAGCTTCAGCTCCAGCTGATTACTTTTTGGCTCTAGATCTTTTTGGCTCAATAACCTTGGTGTTCGAATGTCATTGTTTATATGAGGTTTTCGTGGTGCTTTACTTGTCAAAATATTTTTAGTATATGTGATGATACTTATTTACTTGGGTGGTTTCTGTAAAAGTTTTTAACTCTCAAGCCACAGAATGAAAACTTGTGAACTTGTTCAAAGAATCATTTGAAGCTTCCTTATGGAGGATCAGGTGGGCTTCACCTATGAGAATTTCTACCAATTCTTCTTTTATTCATCAAAGCTCATCCTAATCTCCGTCGAGATTACTGCCTTAGCCCTGTCCTATCATCTGTATAATGGAGTTCGTCTAATGTAAAAATGGAATGTAAGTAGGCGAGGGGGCGGATGTAGCCAAGTGGATCAAGGCAGTGGATTGTGAATCCACCATCATCTGCATACCAGGGGTGGCTATTGACCTCTACATCTCCATAAAATGCATTATAGCATGAATTTTTAAGTTCTTTCCTTAAATAACGTTTCGGTTGTTGGTCCCTGCAATTCTGGCTATGTTCTTTCTCTCTACTCCGTGAGTTCTTCCTTTTACATATACAGTATTAGCTTCGTCTTTATTTTAATGTTTTCATTGCCTTGGAATTCTAGCAATCATAAGGTAAATGTCAGGTTCTTTAGATTTTTCATGTGTAGCTTGGATTTTATATGTCATGCACTCCCTGACCCTTAGGGTGGGTATCCCAACTCTAAAGGGGAAGGGGAAAAAAGGGATCCAGATCCTCTTCAAACAGGAAGTGGGTCCTAATTTCAGTGTTCCGCTCATGCAGGGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGAAGAATTTCAGTTACTCAATCTAGGGTAAGCTGTGTAGCAACAAAAAAGTCTGGATCTTGTAGTTGATATCTCTGTCGACTTTTAGGATTCAGTTTCTAATGTTCTTTTATGCTCCAGCAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAGGTTCTACTTTCTGTTTCTAGCTGGATTTTTTTTTTCTCAAATCAATTTTTATTGATGATTTAAATACTAATGCACATGAGTGGAATATTTTATACAGTGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAGGTGACTCTTATGCTCTCTGGCTTGTTAGTGTATTTCCTAACTGTCAAATAATCTATTAGTAATTCATCCTATGTTCTTGATTTCCTTTTGGTTTCCCAAAAAAAATAGTTCTGCTTGGATAGATCTGGATCATTAGGTAATTGATGGAGTATGTAGACGGGAGGGCGCCCAGACAGTATTATAGCCAACTCCCTTTAATTATTGGTCCTTTACTAACTTTTAGCTCATCTATTAGTAATTTCATCCTATGTTCTTACCATTCTAAGAAGCAAATTATGCAACTTTCTGGCTGGTGTGCCAGCGATTAAACACTTTCCTGATTACCTTTTGGATTCCCGTAGAGTTTTCCAAATCAGCTTTTGAAAAAAAAAATAGTTCTTACTTGGATAGATTTGGATCACTAGGTAATTGATGCAGGGAGTGTATGGATGGGAGGGCGCCCAGACAGTATTTTAGCCAACCAGATTATCAAGGATCTCTTTTTCCCTGATCAACTCCTCTTTATTTTTATTTCTAATTTCATATGCGAAGATTCTTTAATCATGCAAAAGCATTGGCTTCTCTTCTTCCAAGCTGGAAAGACAAACTTTAGTTAAAAAGAGGTGCTATATGTGTATGGCAGTAAGCAGTCACAACTCATGAGATCTGATAGTATTATGATTTATGACAGCATTTGGTAATTGTGATAATTCCCCCTTGTAATGTAGTGCATGCGTCTATCTTTGAACAAATCAATGAGTAGCACCAGTTGAACTTTCTTTCTCTTTAGTTTCAAAAAAAAAAAACTTTATTTCGCTTCAATGAAGTTGCTAGTAAAATGAGTCAGATGCTTGCTGGAAGATTTAGGTAAATCGGCTCTTCTAACTTCATTATCATTTTACAGATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGAGTAAGTCCATGGTTCTCACCAGTGGCATTCTTGTATCTTGAAAAGTAATGTTTTCTTGAAGGTTTGTACATTCATCTTTCGATGCAGGATATAAATGATCAGCCACCAAATCCTAACCAGCCTGTACCTGATCGTGTTGCAGCAAAGCCTAAG</genome_strand>
        <mrna_strand>TCGAGATGAGCAAAATCCACTTGTGGGTTCTGACATACTATCATCAATAATCAATTCGTCTTGAG....................................................................................................................TTCAATAGGAGTTGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGGAGGAAATTGACGAGGCCTTTCGTCGAGTTCCT......................................................................................................GATCCTACCCCAACTGTTACTAGCACACAGCCAGTTGCTGCTAATGAAG..........................................................................................................ATGGGACACAGAAGCCTTCATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATGAAAAAGGTATTGTCAAGGGAAAACCAAGTTTAGCAGAAGAAGCTGCTGTTGCTGCAAAAGCTGCAGCAGCTGCTGCTGCTGATGTTGCCCGAGCAAGCCAGGAGATGTTGGCATCAAAATCCGAAG..............................................................................................................................................................................AGAAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGAAGAATTTCAGTTACTCAATCTAGG.............................................................................................CAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAG.................................................................................................TGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGA.......................................................................................GATATAAATGATCAGCCACCAAATCCTAACCAGCCTGTACCTGATCGTGTTGCAGCAAAGCCTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315991" ref_strand="+" ref_description="SGN-U315991        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: | Symbol: None | peroxisomal protein (PEX14), identical to PEX14 (Arabidopsis thaliana) GI:11094252; contains Pfam profile PF04695: Peroxisomal membrane anchor protein (Pex14p) conserved region; supporting cDNA gi:11094253:dbj:AB037539.1: | chr5:25237391-25241015 FORWARD | Aliases: MQB2.13, MQB2_13(evalue: 3e-21, score=100) genbank/nr: gi|11094252|dbj|BAB17667.1| PEX14 [Arabidopsis thaliana](evalue: 2e-19, score=100)">
      <seq>atcgactagtacatcacaggctgctttacaaaatctgcagccagcgtcagctccgagcaatagcatgaaaaaaatggggtatctctctcatttccattggactcatgcagttattgctgtaggtctactcgctgcttcaggagctggaacagctgtacttttcaagaaatctattattccccggttgaagtcttggatacgcaaggttgtaatggatgaagaagaagatgaaaaaggtattttgaggagctgacaagcctgctaaactatcaagtacgtgagatgaaatcaatgacaagtgctatagagaaactggaagggcaaagtactacttctggaagaatacctgtttcggaactagatgatcgaagaatttcagttactcaatctaggcaatcttatgccaatggaaaagtaaatggtgatgcacattcagtgagatctttgtcaccacctgcatctgttgaaccatctgctgcaccccatccaaagtcttatatggagattatggctatggttcaaagaggagagaagcctcccaacatccgagatataaatgatcagccaccaaatcctaaccagcctgtacctgatcgtgttgcagcaaagcctaagccttgggaagttggccagagtcaaaataattccaatttccttcaatctcaagggagtggcgatggcttgaattatggttaccaagacaatctgacgaatggagacaattcagcaccttggtggcaacgcaagaatgccaggataactgaaatcgaagctgaaggtgaacaaaactttggatctccagctgcaccagttcaggaacgaccaattcagagatcatgggttcctccccagcctcctccagtcgcaatggcagaggcagctgcagccatccgccaacctaaaaagtctgcatctcagaacgaacagttgactgatgatcagttgttagctcgttcatcagatgagttgcagagggttacaagaatctccgaatctggtggtgcccctgaagctaatggttcgagttctggcctacagatgagtgaaacaacaccaattgaagaaggtgatcaaactttcagcagctgaaatatcatttaatttccttgatataaaacgctgggcattcactattgaggttcatcacgatcttacagctacacgttcttgataaatcgagcctcatttcgtgtttacccccaagttacatttatcaactttttggtatatggttgtctattcattacacactctaaactggctgcagacttaagaattgtatttatataattctacagtttgaataaaggttagattatgtgaataacataattcatgttcagtaatttggtggatacaaaaagtattctaataaatcaaagtgtggcctagtggtcaaatgtagtcggttgagaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0197N20.1" temp_strand="+" temp_description="C06HBa0197N20.1  AC211062.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0197N20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41259" stop="47024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41559" g_stop="41724" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41725" i_stop="42347" i_length="623">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.362" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42348" g_stop="42411" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="230" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42412" i_stop="42711" i_length="300">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42712" g_stop="42801" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="319" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42802" i_stop="44021" i_length="1220">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44022" g_stop="44095" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="393" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44096" i_stop="44188" i_length="93">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44189" g_stop="44231" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="436" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44232" i_stop="44328" i_length="97">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44329" g_stop="44396" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="504" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44397" i_stop="45279" i_length="883">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45280" g_stop="45324" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="549" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="45325" i_stop="45411" i_length="87">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="45412" g_stop="45477" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="615" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="45478" i_stop="45921" i_length="444">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="45922" g_stop="46733" g_length="812"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="1427" r_length="812" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0197N20.1" gen_strand="+" ref_id="SGN-U315991" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1428</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0197N20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41559" e_stop="41724"/>
          <exon e_start="42348" e_stop="42411"/>
          <exon e_start="42712" e_stop="42801"/>
          <exon e_start="44022" e_stop="44095"/>
          <exon e_start="44189" e_stop="44231"/>
          <exon e_start="44329" e_stop="44396"/>
          <exon e_start="45280" e_stop="45324"/>
          <exon e_start="45412" e_stop="45477"/>
          <exon e_start="45922" e_stop="46733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAGGTATTGCATAGTAAAGAGCTTTCTATTTATCATGCCAATCCGTACCATATTGTACTTTTTCTTCTGTCTATTCCCCATTTCTTCAGTGTAGATTTATTTTTCATAAGCGAGACATCTCAAACTTTTATTTGTGGTGGTTCAGTTTATTATTAGTTTAGTAAATTGGTTGAACTTATTGACCGAAACAAAGAAAAGAAAAGAAAAGAAAAAAAGCCTAATGATTTCATACAAATTACAAAAGGTGGTATTTGATTAATGATGGGTATCTCATAGATGTAACTCTGGCCTCTCATATGTGAGGAGCTTGCATGGTGATGGAAAATTTGACCACGCCTATATACTCTAGATGCAGGTCATTTCAAAAAAGCGTGTACCTTAACTGAAGAACTATTTGAAGATTTTTAGTTAACCCTGTTCTGACTTTTGTGTTCCTTCTTTCTTTATTATAAATATCCCTGTTATGAAGATTTTCTTCAGATTTATTTGGTCTCCTCCGATGCTTTATCTTATTAGATCCATCTCTAAAGTAGGATTCTGGTGCTTATGACAATCTATTGGAAACTTTTCTCATGGACTACTCACTATATTTATCACCCACTGTTAAGTGACACGTCCATTTGCAGAAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATGAAAAAGGTATTGTCAAGGGAAAACCAAGTTTAGCAGAAGAAGCTGCTGTTGCTGCAAAAGCTGCAGCAGCTGCTGCTGCTGATGTTGCCCGAGCAAGCCAGGAGATGTTGGCATCAAAATCCGAAGGTTGGTAATGTAAATTCTTATGTAATAACAAGTTAAGAACTGGATCTGAAATAAAATAAACTGAAATATTGTTCAACATTGGTGACTTAAATCTTTCATCCTCTTTCTTATCCAGTGCTTATTTTTTTTTACCATCGATAATCATGTTGTGATTTAACTTGTGTTCCTCCACAGAGAAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAGGTGTGCCTCTTCATTTGCTCTTGAAGTAGAAATTCTCTACTTAATCAATAGGTTTTTGCATATTGACCATTTTTTGCTAGTACATGAGATGAAATCAGTGACAAGTGCTATAGAGAAACTGGAAGGTGTGCCTCTTCATTTGCTCATGAAGTAGAAATTCTCTACTTAATCAATAGATTTTTTGCATATTGACCATTTTTTGCTTTTAGGGGGTCGTGTAATTTAAAAAGGATGTGTTATGACACAAAAGGGGGTTAGAAAGGAGGTAAATTTTGGCGACCTGCTGAGAAGTAATTAATAACTTGATTGTTCATAACTGAAAGAGCAATGGAGAAAGATAGAGATAATAAATTGTGCATAACCTGTATAATTATAGTTTGCTGATTCCAGCTTCAGCTCCAGCTGATTACTTTTTGGCTCTAGATCTTTTTGGCTCAATAACCTTGGTGTTCGAATGTCATTGTTTATATGAGGTTTTCGTGGTGCTTTACTTGTCAAAATATTTTTAGTATATGTGATGATACTTATTTACTTGGGTGGTTTCTGTAAAAGTTTTTAACTCTCAAGCCACAGAATGAAAACTTGTGAACTTGTTCAAAGAATCATTTGAAGCTTCCTTATGGAGGATCAGGTGGGCTTCACCTATGAGAATTTCTACCAATTCTTCTTTTATTCATCAAAGCTCATCCTAATCTCCGTCGAGATTACTGCCTTAGCCCTGTCCTATCATCTGTATAATGGAGTTCGTCTAATGTAAAAATGGAATGTAAGTAGGCGAGGGGGCGGATGTAGCCAAGTGGATCAAGGCAGTGGATTGTGAATCCACCATCATCTGCATACCAGGGGTGGCTATTGACCTCTACATCTCCATAAAATGCATTATAGCATGAATTTTTAAGTTCTTTCCTTAAATAACGTTTCGGTTGTTGGTCCCTGCAATTCTGGCTATGTTCTTTCTCTCTACTCCGTGAGTTCTTCCTTTTACATATACAGTATTAGCTTCGTCTTTATTTTAATGTTTTCATTGCCTTGGAATTCTAGCAATCATAAGGTAAATGTCAGGTTCTTTAGATTTTTCATGTGTAGCTTGGATTTTATATGTCATGCACTCCCTGACCCTTAGGGTGGGTATCCCAACTCTAAAGGGGAAGGGGAAAAAAGGGATCCAGATCCTCTTCAAACAGGAAGTGGGTCCTAATTTCAGTGTTCCGCTCATGCAGGGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGAAGAATTTCAGTTACTCAATCTAGGGTAAGCTGTGTAGCAACAAAAAAGTCTGGATCTTGTAGTTGATATCTCTGTCGACTTTTAGGATTCAGTTTCTAATGTTCTTTTATGCTCCAGCAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAGGTTCTACTTTCTGTTTCTAGCTGGATTTTTTTTTTCTCAAATCAATTTTTATTGATGATTTAAATACTAATGCACATGAGTGGAATATTTTATACAGTGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAGGTGACTCTTATGCTCTCTGGCTTGTTAGTGTATTTCCTAACTGTCAAATAATCTATTAGTAATTCATCCTATGTTCTTGATTTCCTTTTGGTTTCCCAAAAAAAATAGTTCTGCTTGGATAGATCTGGATCATTAGGTAATTGATGGAGTATGTAGACGGGAGGGCGCCCAGACAGTATTATAGCCAACTCCCTTTAATTATTGGTCCTTTACTAACTTTTAGCTCATCTATTAGTAATTTCATCCTATGTTCTTACCATTCTAAGAAGCAAATTATGCAACTTTCTGGCTGGTGTGCCAGCGATTAAACACTTTCCTGATTACCTTTTGGATTCCCGTAGAGTTTTCCAAATCAGCTTTTGAAAAAAAAAATAGTTCTTACTTGGATAGATTTGGATCACTAGGTAATTGATGCAGGGAGTGTATGGATGGGAGGGCGCCCAGACAGTATTTTAGCCAACCAGATTATCAAGGATCTCTTTTTCCCTGATCAACTCCTCTTTATTTTTATTTCTAATTTCATATGCGAAGATTCTTTAATCATGCAAAAGCATTGGCTTCTCTTCTTCCAAGCTGGAAAGACAAACTTTAGTTAAAAAGAGGTGCTATATGTGTATGGCAGTAAGCAGTCACAACTCATGAGATCTGATAGTATTATGATTTATGACAGCATTTGGTAATTGTGATAATTCCCCCTTGTAATGTAGTGCATGCGTCTATCTTTGAACAAATCAATGAGTAGCACCAGTTGAACTTTCTTTCTCTTTAGTTTCAAAAAAAAAAAACTTTATTTCGCTTCAATGAAGTTGCTAGTAAAATGAGTCAGATGCTTGCTGGAAGATTTAGGTAAATCGGCTCTTCTAACTTCATTATCATTTTACAGATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGAGTAAGTCCATGGTTCTCACCAGTGGCATTCTTGTATCTTGAAAAGTAATGTTTTCTTGAAGGTTTGTACATTCATCTTTCGATGCAGGATATAAATGATCAGCCACCAAATCCTAACCAGCCTGTACCTGATCGTGTTGCAGCAAAGCCTAAGGTTTGTCTTGTCCTTCTGTTTCTTCTACCAACAATGTTGCAATTGGGTCAAATTTGAAGGTTGGATTGGGTCAATTTAAGAATTGTCTCTGCATGATTGACTTTTAAAAAGAACCTTAGCCACATTCTGGCAGCTAGACGTGAAAAATACGATTTACTAATCGAATCTATAATCCTATTTAAGTACTTCTTTTGATGAATTAATCACTGCAACTAGGATATTTCAGGAATATTGTATGGATTAAGTTCTATGAACACCTGTCACTTTGGTTTGGATACAAGAGTTATGGTTTACTAGATAGAACTTTCTATTCAATACATTCGGCTTTTTTTCTTGGATTGTCTGGACGAGAGGTGGGATTGGAGACGGGCCATATGCAGTTCACATGTAAGATTTACTCGAAGTGGCAATGATAACCATTTAATAATCTGTGCTTGTGAACAGCCTTGGGAAGTTGGCCAGAGTCAAAATAATTCCAATTTCCTTCAATCTCAAGGGAGTGGCGATGGCTTGAATTATGGTTACCAAGACAATCTGACGAATGGAGACAATTCAGCACCTTGGTGGCAACGCAAGAATGCCAGGATAACTGAAATCGAAGCTGAAGGTGAACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTCAGAGATCATGGGTTCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAGGCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATTCACTATTGAGGTTCATCACGATCTTACAGCTACACGTTCTTGATAAATCGAGCCTCATTTCGTGTTTACCCCCAAGTTACATTTATCAACTTTTTGGTATATGGTTGTCTATTCATTACACACTCTAAACTGGCTGCAGACTTAAGAATTGTATTTATATAATTCTACAGTTTGAATAAAGGTTAGATTATGTGAATAACATAATTCATGTTCAGTAATTTGGTGGATACAAAAAGTATTCTAATAAATCAAAGTGTGGCCTAGTGGTCAAATGTAGTCGGTTGAGAATACTTATTCGG</genome_strand>
        <mrna_strand>ATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATG............................................................................................................................................................................................................................................................................................................A-AAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGAAGAATTTCAGTTACTCAATCTAGG.............................................................................................CAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAG.................................................................................................TGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGA.......................................................................................GATATAAATGATCAGCCACCAAATCCTAACCAGCCTGTACCTGATCGTGTTGCAGCAAAGCCTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTGGGAAGTTGGCCAGAGTCAAAATAATTCCAATTTCCTTCAATCTCAAGGGAGTGGCGATGGCTTGAATTATGGTTACCAAGACAATCTGACGAATGGAGACAATTCAGCACCTTGGTGGCAACGCAAGAATGCCAGGATAACTGAAATCGAAGCTGAAGGTGAACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTCAGAGATCATGGGTTCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAGGCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATTCACTATTGAGGTTCATCACGATCTTACAGCTACACGTTCTTGATAAATCGAGCCTCATTTCGTGTTTACCCCCAAGTTACATTTATCAACTTTTTGGTATATGGTTGTCTATTCATTACACACTCTAAACTGGCTGCAGACTTAAGAATTGTATTTATATAATTCTACAGTTTGAATAAAGGTTAGATTATGTGAATAACATAATTCATGTTCAGTAATTTGGTGGATACAAAAAGTATTCTAATAAATCAAAGTGTGGCCTAGTGGTCAAATGTAGTCGGTTGAGAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335428" ref_strand="+" ref_description="SGN-U335428        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gtttcttctaccaacaatgttgcaattgggtcaaatttgaaggttggattgggtcaatttaagaattgtctctgcatgattgacttttaaaaagaaccttagccacattctggcagctagacgtgaaaaatacgatttactaatcgaatctataatcctatttaagtacttcttttgatgaattaatcactgcaactaggatatttcaggaatattgtatggattaagttctatgaacacctgtcactttggtttggatacaagagttatggtttactagatagaactttctattcaatacattcggctttttttcttggattgtctggacgagaggtgggattggagacgggccatatgcagttcacatgtaagatttactcgaagtggcaatgataaccatttaataatctgtgcttgtgaacagccttgggaagttggccagagtcaaaataattccaatttccttcaatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0197N20.1" temp_strand="+" temp_description="C06HBa0197N20.1  AC211062.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0197N20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45195" stop="46270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45495" g_stop="45970" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0197N20.1" gen_strand="+" ref_id="SGN-U335428" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0197N20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45495" e_stop="45970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTTCTACCAACAATGTTGCAATTGGGTCAAATTTGAAGGTTGGATTGGGTCAATTTAAGAATTGTCTCTGCATGATTGACTTTTAAAAAGAACCTTAGCCACATTCTGGCAGCTAGACGTGAAAAATACGATTTACTAATCGAATCTATAATCCTATTTAAGTACTTCTTTTGATGAATTAATCACTGCAACTAGGATATTTCAGGAATATTGTATGGATTAAGTTCTATGAACACCTGTCACTTTGGTTTGGATACAAGAGTTATGGTTTACTAGATAGAACTTTCTATTCAATACATTCGGCTTTTTTTCTTGGATTGTCTGGACGAGAGGTGGGATTGGAGACGGGCCATATGCAGTTCACATGTAAGATTTACTCGAAGTGGCAATGATAACCATTTAATAATCTGTGCTTGTGAACAGCCTTGGGAAGTTGGCCAGAGTCAAAATAATTCCAATTTCCTTCAATCTC</genome_strand>
        <mrna_strand>GTTTCTTCTACCAACAATGTTGCAATTGGGTCAAATTTGAAGGTTGGATTGGGTCAATTTAAGAATTGTCTCTGCATGATTGACTTTTAAAAAGAACCTTAGCCACATTCTGGCAGCTAGACGTGAAAAATACGATTTACTAATCGAATCTATAATCCTATTTAAGTACTTCTTTTGATGAATTAATCACTGCAACTAGGATATTTCAGGAATATTGTATGGATTAAGTTCTATGAACACCTGTCACTTTGGTTTGGATACAAGAGTTATGGTTTACTAGATAGAACTTTCTATTCAATACATTCGGCTTTTTTTCTTGGATTGTCTGGACGAGAGGTGGGATTGGAGACGGGCCATATGCAGTTCACATGTAAGATTTACTCGAAGTGGCAATGATAACCATTTAATAATCTGTGCTTGTGAACAGCCTTGGGAAGTTGGCCAGAGTCAAAATAATTCCAATTTCCTTCAATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335427" ref_strand="+" ref_description="SGN-U335427        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: LacZ-alpha(evalue: 6e-05, score=51.2)">
      <seq>aactatactttggatctccagctgcaccatttcatgaacgacatattcataaatcatgggatcctccccagcctcctccagtcgcaatggcagaggcagctgcagccatccgccaacctaaaaagtctgcatctcagaacgaacagttgactgatgatcagttgttagctcgttcatcagatgagttgcagagggttacaagaatctccgaatctggtggtgcccctgaagctaatggttcgagttctggcctacagatgagtgaaacaacaccaattgaagaaggtgatcaaactttcatcacctgacatttcttttaatttccttgaaaaaaaatgctgggtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0197N20.1" temp_strand="+" temp_description="C06HBa0197N20.1  AC211062.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0197N20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45788" stop="46734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46088" g_stop="46434" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0197N20.1" gen_strand="+" ref_id="SGN-U335427" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0197N20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46088" e_stop="46434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTCAGAGATCATGGGTTCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAGGCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATT</genome_strand>
        <mrna_strand>AACTATACTTTGGATCTCCAGCTGCACCATTTCATGAACGACATATTCATAAATCATGGGATCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAGGCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCATCACCTGACATTTCTTTTAATTTCCTTGAAAAAAAATGCTGGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326345" ref_strand="+" ref_description="SGN-U326345        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:10339449-10340673 FORWARD | Aliases: K16N12.10(evalue: 4e-13, score=70.5) genbank/nr: At3g27880(evalue: 2e-11, score=70.5)">
      <seq>agagtctccatctgatcaattgcataagaagagtaactccactggctcctcttctaagaggtggaagttacgtgacttcactcaccggagtaacagtgagggtaaagatactttcgtgtttttgacaactccgttcaaaaaaagagaagagaaaacagagactacgagaaccgactctggaataatcaccggaaaagttcccgccgttgaagattttccggcgttgcgttgttcgataagcggaaaagataaacgcaagtcatatttaccatacaggcaagatttattaagctttctgggtaatgtgaatgggctaaatcgaaattttcagcatttctgaggctaattacagtgaacggaatcttcagatagttaaacagttaatcagtgattaagcatgggtaaataatatctaatggattatgaatgaaatattgaattaatttaacaagttatctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0197N20.1" temp_strand="+" temp_description="C06HBa0197N20.1  AC211062.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0197N20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55098" stop="56160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55398" g_stop="55853" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="459" polyA_stop="471"/>
      <MATCH_line gen_id="C06HBa0197N20.1" gen_strand="+" ref_id="SGN-U326345" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0197N20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55398" e_stop="55853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTCTCCATCTGATCAATTGCGTAAGAAGAGTAACTCCACTGGCTCCTCTTCTAAGCGGTGGAAGTTACGTGACTTCACTCACCGGAGTAACAGTGAGGGTAAAGATACATTCGTGTTTTTGACAACTCCGTTCAAAAAAAGAGAAGAGAAAACAGAGATTACGAGAACCGACTCTGGAATAATCACCGGAAAAGTTCCCGCCGTTGAAGATTTTCCGGCGTTGCGTTGCTCGATAAGCGGAAAAGATAAACGGAAGTCCTATTTACCATACAGGCAAGATTTACTAAGCTTTCTGGGTAATGTGAATGGGCTAAATCGAAATTTACAGCATTTCTGAGGCTAATTACAGTGAACGAAATCTTCAGATAATTAAATAGTTAATCAGTGATTAAGCATGGGTAAATAATATCTAATGGATTATGAATGAAATATTGAATTAATTTAACAGGTTAT</genome_strand>
        <mrna_strand>AGAGTCTCCATCTGATCAATTGCATAAGAAGAGTAACTCCACTGGCTCCTCTTCTAAGAGGTGGAAGTTACGTGACTTCACTCACCGGAGTAACAGTGAGGGTAAAGATACTTTCGTGTTTTTGACAACTCCGTTCAAAAAAAGAGAAGAGAAAACAGAGACTACGAGAACCGACTCTGGAATAATCACCGGAAAAGTTCCCGCCGTTGAAGATTTTCCGGCGTTGCGTTGTTCGATAAGCGGAAAAGATAAACGCAAGTCATATTTACCATACAGGCAAGATTTATTAAGCTTTCTGGGTAATGTGAATGGGCTAAATCGAAATTTTCAGCATTTCTGAGGCTAATTACAGTGAACGGAATCTTCAGATAGTTAAACAGTTAATCAGTGATTAAGCATGGGTAAATAATATCTAATGGATTATGAATGAAATATTGAATTAATTTAACAAGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338334" ref_strand="+" ref_description="SGN-U338334        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: LacOPZ-alpha(evalue: 6e-21, score=104)">
      <seq>tttttttttttttttaattaattcaatatttcattcataatccacccatgaaaatttacccatgcttaatcactgattaactgtccccttaactgaagattccgttcactgtaattagcctcagaaatgctgaaaatttcgatttagcccattcacattacccagaaagcttaataaatcttgcctgtatggtaaatatgacttgcgtttatcttttccgcttatcgaacaacgcaacgccggaaaatcttcaacggcgggaacttttccggtgattattccagagtcggttctcgtagtctctgttttctcttctctttttttgaacggagttgtcaaaaacacgaaagtatctttaccctcactgttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0197N20.1" temp_strand="-" temp_description="C06HBa0197N20.1  AC211062.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0197N20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56147" stop="55187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55857" g_stop="55487" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0197N20.1" gen_strand="-" ref_id="SGN-U338334" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0197N20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55857" e_stop="55487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACATAACCTGTTAAATTAATTCAATATTTCATTCATAATCCATTAGATATTATTTACCCATGCTTAATCACTGATTAACTATTTAATTATCTGAAGATTTCGTTCACTGTAATTAGCCTCAGAAATGCTGTAAATTTCGATTTAGCCCATTCACATTACCCAGAAAGCTTAGTAAATCTTGCCTGTATGGTAAATAGGACTTCCGTTTATCTTTTCCGCTTATCGAGCAACGCAACGCCGGAAAATCTTCAACGGCGGGAACTTTTCCGGTGATTATTCCAGAGTCGGTTCTCGTAATCTCTGTTTTCTCTTCTCTTTTTTTGAACGGAGTTGTCAAAAACACGAATGTATCTTTACCCTCACTGTTAC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTAATTAATTCAATATTTCATTCATAATCCACCCATGAAAATTTACCCATGCTTAATCACTGATTAACTGTCCCCTTAACTGAAGATTCCGTTCACTGTAATTAGCCTCAGAAATGCTGAAAATTTCGATTTAGCCCATTCACATTACCCAGAAAGCTTAATAAATCTTGCCTGTATGGTAAATATGACTTGCGTTTATCTTTTCCGCTTATCGAACAACGCAACGCCGGAAAATCTTCAACGGCGGGAACTTTTCCGGTGATTATTCCAGAGTCGGTTCTCGTAGTCTCTGTTTTCTCTTCTCTTTTTTTGAACGGAGTTGTCAAAAACACGAAAGTATCTTTACCCTCACTGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314194" ref_strand="+" ref_description="SGN-U314194        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: AT5G62890.2 | Symbol: None | permease, putative, similar to permease 1 (Zea mays) GI:7844006; contains Pfam profile: PF00860 Xanthine/uracil permeases family; identical to cDNA  putative permease 1 (MQB2.21) GI:21326024 | chr5:25260650-25264603 FORWARD | Aliases: None (evalue: 0, score=884) genbank/nr: gi|62183958|gb|AAX73299.1| putative permease I [Lycopersicon esculentum] (evalue: 0, score=1023)">
      <seq>tggaggaggaggagcagctccagcagcaaaggcaagtgaaccagtgccacatccaccaaaagatcagcttcctaatgtttcttactgcattactagtcctcccccatggcctgaagctattcttcttggatttcagcattatcttgttatgcttggtaccattgttatcattcctacagctctagttccccaaatgggaggtggaaatgaggaaaaagcccaagttattcagacatcgctattcgtcgctgggctgaacaccttgttgcagtctatctttgggactagattgcctgctgtgattggagggtcttatacctttgttgcacctacaatctcgattatcctttctggacaatggaatgatgaagatcctgtgtcgaaattcaagaagataatgcgggccacccaaggtgcccttattgttgcttcaacccttcagattgtcctaggcttcagtggtctctggcgcaatgttacaaggtttctgagtccactttcagctgttcctttggtttctcttgttggctttggtctttatgagtttggttttcctggggttgccaaatgtgttgaaattgggttgccagagctagtccttttagtcattttctctcagtatctggcacacctgatacgtccagggaagaatatatttgatcgttttgctgttcttttcacggtgatcattgtatggatttatgcacacctactcactgtgggcggggcttacaatggaaagccaccgaagacacaagcaagctgcagaactgaccgtgctggactcattagtggtgctcaatggattagtattccttaccctttccaatggggacctccttcattcaatgctggtgaagcatttgctatgatgatggctagttttgttgctctagtagagtccactggtgcttttattgcagttgcaagatatgcaagtgccactcccttaccaccatccatacttagtcgtggtgttggttggcagggagttggcattctactatcaggattatttggcactgggaatggatcttctgtatccgtggagaatgctggtctattagcattgacacgtgttggcagtagaagagttgttcagatatctgctgcgttcatgattttcttttcaattctcgggaaatttggagctgtctttgcttcaattcctgcacctattgttggtgctttatattgccttttcttcgcttatgtaggcgctggaggcttaggttttcttcagttctgcaatcttaatagtttccgcaccaagtttatattaggtttctccgtctttcttggcttgtccattccacagtacttcaatgagtatactgctgttgctggttatggacctgttcacacacatgcaagatggttcaacgacatggccaacgttccctttcaatcaaaagcttttgtggcgggtatcgttgcctttttcctggacaacacaatgcacaaaaaggatggccagacaagaaaggacagaggcaagcactggtgggacaaattcaagtccttcaagactgacacgagaagtgaggaattctactccctccctttcaatctgaacaagtatttcccatctgtgtgatttggcgacgccacggacacaaaggtttcatctttttactagtaagtactagagttcatctgtgcttgttggagagggggggaggtaggttgctgctgcaacatcaattttcttctttcatgagaaatgaagtatgaagaagcttagaacaacagttattagtttaagtatttcctactgttgtaaatttatggatcatttggattcaactttaactagcaattgagcaagcaatccttttatgaataaaaaaaaaaaaaaatcagtgtacaacaaaacactaggacaatttttttttttgtcttgcatgaaaaaaatagaaaaattgtaaaatggtttttaaattatgtgaaatcaaacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0197N20.1" temp_strand="-" temp_description="C06HBa0197N20.1  AC211062.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0197N20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69924" stop="60107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69624" g_stop="69515" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69514" i_stop="67872" i_length="1643">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67871" g_stop="67774" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="208" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67773" i_stop="67665" i_length="109">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.564" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67664" g_stop="67491" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="382" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67490" i_stop="66409" i_length="1082">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66408" g_stop="66308" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="483" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66307" i_stop="66062" i_length="246">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66061" g_stop="65986" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="559" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65985" i_stop="65906" i_length="80">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65905" g_stop="65846" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="619" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65845" i_stop="64814" i_length="1032">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="64813" g_stop="64629" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="804" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="64628" i_stop="63555" i_length="1074">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="63554" g_stop="63458" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="805" r_stop="901" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="63457" i_stop="63089" i_length="369">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="63088" g_stop="63002" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="902" r_stop="988" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="63001" i_stop="61771" i_length="1231">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="61770" g_stop="61712" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="989" r_stop="1047" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="61711" i_stop="61627" i_length="85">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="61626" g_stop="61535" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1048" r_stop="1139" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="61534" i_stop="61427" i_length="108">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="61426" g_stop="61349" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1140" r_stop="1217" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="61348" i_stop="61240" i_length="109">
            <donor d_prob="0.272" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="61239" g_stop="61079" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1218" r_stop="1378" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="61078" i_stop="60990" i_length="89">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="60989" g_stop="60407" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1379" r_stop="1960" r_length="582" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0197N20.1" gen_strand="-" ref_id="SGN-U314194" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1961</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0197N20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U314194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69624" e_stop="69515"/>
          <exon e_start="67871" e_stop="67774"/>
          <exon e_start="67664" e_stop="67491"/>
          <exon e_start="66408" e_stop="66308"/>
          <exon e_start="66061" e_stop="65986"/>
          <exon e_start="65905" e_stop="65846"/>
          <exon e_start="64813" e_stop="64629"/>
          <exon e_start="63554" e_stop="63458"/>
          <exon e_start="63088" e_stop="63002"/>
          <exon e_start="61770" e_stop="61712"/>
          <exon e_start="61626" e_stop="61535"/>
          <exon e_start="61426" e_stop="61349"/>
          <exon e_start="61239" e_stop="61079"/>
          <exon e_start="60989" e_stop="60407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGGAGGAGGAGCAGCTCCAGCAGCAAAGGCAAGTGAACCAGTGCCACATCCACCAAAAGATCAGCTTCCTAATGTTTCTTACTGCATTACTAGTCCTCCCCCATGGCGTAAGTTTCTTTACATCTCTTTCCCTTTTATGCTACCCCACTACATTGCTTTGTGTTTTTATTATCTTTTTTGATTTTGGGGGTGTAATAATGGGTACTTGTTAGTTTCTTTGAGCAGACGACTGAGTGATGAATGGTTCAGGTTCAGGTTCAGGTTCGAATCTCAACTTAATGTGAGCTCATAGGAGCTAAGGGTTGGGACAATGTGGGATAGTATGGCTAACAGGTGGATTAATCGAGGTGCATACAAGCTAGTCTAGATGCATATGGTTTATGGGTTATGGTTCTTGTGAACCCATTTTTTTTCTTTCTTGAAGATTGCACTGTACTACTTGATAACACAATCACTTGTTCTGGTTTCACATTTTCTGTTTTCTTCAAAGGTGTATGGCATGTTATGCTTTGGGTTCATGGGGTTTATGTTTTTAGCTAGCAAATTGGAATCTGAAACGGGTCTAGCAGCTCCCAGAATGTGCACCCTATTGAAAAGAATAGTAAAAGTTACTCATTCCACTTGAGGATGCCATTTTTGCCTATAAATCAGCCATTTGGTTCACCTCTCTGAAACAATGGCGTACTTGTGTTTCATCTATGTCCATGTTGAGCCTTATTTCCCTGATGATCTCTTTGAGTTTAAGGTTGGAATTGTTCTCTTCTTTTATCATTAGCAATAACCATAGAGTCCATCTCCAAGTCCAGTTGATATTGTTTTGATTGCACCATTGAACACCATATCTAACAGCTTCAGCTTCTACTTGATTGTTACTTTGACAACATATTGGAATTGAATAGGCCATTACAAGATCTCCAACTGCATCTCTAATGATAATCCCAATTCCAGCTCTGTTATTGCTTCTTAAAAAACTACCATCACTATTGAGTTTGAATCTTCCCTCAGTAGGTTTTTTCCAGACAACGACCTTACAACTCACCACTGGTTTCATTCTTTCCACAGTTTGACAAATATGTAGCCATGTGTAGTTATCATCAAACAATTTGCATTTAGGGAAAACTATACCAATAGCAGCTTTAATACTCCACAAAATTTAGTTTCCGTTCTTTTAGTATTGAACTTCTTGGTGAAGAATCATTGGATTGTATTTCATTCAACAAATTGAGACTAATTTGGTTGTATTGTGGATGGAGTCTATTTTATTTATACATCTCAAGGGTGTGTGTATCTTATACATGAAAAACTAATGTAAGATATTAGGTAGTCTGGGTTTGCTAGGCCTGGGTGCCATATATCATAAGACAATAAGGGGCCGTTTAGTTACGGTATAAGAGGGCATGTTATTAAACACAATGTGTATTGACCATCACTTGTTCTGGTGGGCATGTTATTAAACACAATGTGTATTGACCATCACTTGTTCTGGTTTCACATTTTCTATTTTCTTCAAAGATAAATTACTGGCGATTTGTCTGTGTCATGTTATGCTTTGGGTTCATGGGGTTTATGTTTCTAGCCAGCAAATTGGAATCTAAAACTGGTTTGATATGGGAAGCAGCTCCCAAAATGTGCACCCTATTTTCTTGGTACTGTTTGGTGAAGAATAATTAGATTGAACCTATATGTTTTAAATTGGTTTCGCCATGTTTATTGTGGACCAAGCTGATTTTGTGTAATTGTTGGGATGCAGCTGAAGCTATTCTTCTTGGATTTCAGCATTATCTTGTTATGCTTGGTACCATTGTTATCATTCCTACAGCTCTAGTTCCCCAAATGGGAGGTGGAAATGTGAGGCCTCCAGACACATTGAACGACTTATTTACTTAAGATATGAGTTTCTCTTTTGACCTCACGTAATGTTATACATTTTAACTGGAAGACTATCTGCCCGTTGCAGGAGGAAAAAGCCCAAGTTATTCAGACATCGCTATTCGTCGCTGGGCTGAACACCTTGTTGCAGTCTATCTTTGGGACTAGATTGCCTGCTGTGATTGGAGGGTCTTATACCTTTGTTGCACCTACAATCTCGATTATCCTTTCTGGACAATGGAATGATGAAGATCCTGTGTCGGTTAGTGTCCTCAAACACCAGTCATTTTCTCTTTATTCTTTGGATCATCTAGTGAACTTATTGGTTGATTGTCAAGGACAAAAATTGAGATATTGGTTAACTTATATACTCAAAGGCCAGCTCCCAAAATCCTTTTCGAAAAGTTAGAAATTAAATTACAGCCTTCCTTGTTTTTCCCCTCTTGGGTCATTTAGGTTCCCAATTCTAAACCAATTTTTTGCACTCCCTGTCTGATCAGATTTCTTGGCACAATCACTCCACCACTTTTCTTCTTTTCTCTTTATTTGGTCCATATGGTGTAACAACTACTTTTTGTTACCTTTTGACTATTTGTAAATATGTTTAGTCCATTTTTTCTCATAATTTCAGCAATATGAAAGTGTGTACATTGTTTTAGGGTTGTAATGGTATTTCTCCAAACAATTGAATCAAAATCACAACTTCTCAATTTTGTAAAAAATATACAAGTACCAATTTTTTCAATAACCAAATCCATACACTAACAATAATTTTCCATAATATCACTTTGAGAAAACAAATTAATATACCATCCAATTGTCAAAAGAAGCTGATGCACAAATTTAAACCTTTTTGGAGTAATGTGGTCATGCCAGGAGATGTTAAAAGTTTACTACCGAGCAGTGTCTAGGGTTGATAAAAGACTGAAGTTACTGAAGAAGACAGTTACTCTACATATTTTGTGGATTGTTTGGATAGAAAGAAAAAGAGATGTTTTGAGGAAAAGGTAGAACACCTTTATTTTCTTAAAAATAGATGCTTACTAATTTATACTCATGGTGTAAGGGTCGTATCGTATGACAGACGGTTTAGTTCAGCTATTTTTTTCTTTTCTCATATGGTACTGAGATATAATTAATTTTACATTACCTTATCTAAAAAAAAGGAAGAATAAAAAACTGATGCAGAAATAGTTTACTTTCAACTTGATAATTCATGTCAGTGTATATTCCTTTAACTTCTTTAATAGCCAGGAAGACGCTTAGAGACACAAAGGAAGTCATCCAATTCATCTTGGTGATATTGGATCTTAGTTTATTGTTAATATTTCTCTGTTTATTCAGAAATTCAAGAAGATAATGCGGGCCACCCAAGGTGCCCTTATTGTTGCTTCAACCCTTCAGATTGTCCTAGGCTTCAGTGGTCTCTGGCGCAATGTTACAAGGTTTGTTACATCACAAGATTTCTCCCTCCATTTGAGCGATTTCTCATAATGCTACCTAACTTTATACCATCAATTATGCACGTTCTTGCCTGCTCTTGGATATTCTTATGCTATACTTTGTGAGCAAGTTCTCTAAGTCTAAGGGTCACTTTCTTGTGGTTTAAGGTCTGTTCAGTTATGTTAAGTGCTTTGTGTTCGTACAGTGTGCTAGCTCTGATTATCATTTTACTTCATGTGGATTCTTAGGTTTCTGAGTCCACTTTCAGCTGTTCCTTTGGTTTCTCTTGTTGGCTTTGGTCTTTATGAGTTTGGTTTTCCTGGGGTAAGCAGAAACTCACCACACTTATCTTGCATTGATATTCATCCAATGATGATTGTTGAATTTGTTTCATCTCTGTTTAGGTTGCCAAATGTGTTGAAATTGGGTTGCCAGAGCTAGTCCTTTTAGTCATTTTCTCTCAGGTAAGTTGTTTTGTCGAGATATCATATATATCTCGTAAACATCATATATATATATATATATATATATATATATTGGGAAGCTCCAAAGTGAAAAGTTGAATTATCATTTTGCCCTTTTATTAAATTAAAACTTATATAATTTTCAAAATCTTGACCTTTCAAATTTCTCACACAAATTTTAAGAAAATACAAATGAGTAATTATTCCTTAAAGACAAGAAATTAAAGTAGATTCATGTATCTTTTAAAATTAAATTTCATCTCAATCTTTTTTATATTTATTTTTATAATATTTGACCTTTCAATTTTTCATGTGTATTTTCATGTTTCCATAATTTTGTTCTATAAATTTAACTTTTCCAAGAAAAACTTTTATTTACTATTCCTACAATACTTGTGTGTAGGGACTCTAAAATTTATTTCACGCATTATATTTTCTTATCTCATCTTCCAATAGTAACTTATTTTTACATTTTTCATTCATATTTTAATATATAAAATTTCTTTGTTATTATTGGTTGTACATAGTTTAATCTTCTCAATGATATTTATTCTGATCAATCTTTTCACATCGTTAGATACTCTATAAAGTGTATCATAAGTTTGGTTTATCCAATTATTTCATTTGTCTTCTTTGGTTAAATTTCTCCTCCAAAAAGAGTCTACTTCACGTAAAGCTTATTTCAATATAATTGATTTAGCTACAAATATTGACCAACACTTTTTGTATTATTGTTAAGCTAGCAGCATATTCACTTCTTTTTAGTATAATATCTATTTATGAAAAGTTTCTGTTGCAATAGAACTCAAAATTCAGATATAAGTTGATCTGTGAATGTCTTTGCATATTTGAATTTTGAAATGTGGACATGGACTATGTTTGGAGCACACAGGTTCATAATTGATTGTGTGTTTGTAGTTTAAAATGGTATGAAATACACGTGCGTTGCACGTGTTCGAGAACTATTTATTTAAACACACTACATAGTAGGATATAAGTTACACATTCTTAATAAAACACTGGTTTTTGCAGTATCTGGCACACCTGATACGTCCAGGGAAGAATATATTTGATCGTTTTGCTGTTCTTTTCACGGTGATCATTGTATGGATTTATGCACACCTACTCACTGTGGGCGGGGCTTACAATGGAAAGCCACCGAAGACACAAGCAAGCTGCAGAACTGACCGTGCTGGACTCATTAGTGGTGCTCAATGGCACGTGCTCCGCTCCTTCATTTTTCACTTTTCTAATGTACTGGCATGGGTTAAATATTTGTGTGGATATGCAGATCTTTTTGGTATTTTAACATTTATGCGGTCCCAAAGATACGGAACTCCTTGGTAAAAATTACAACTTTGTAAGTGTAAGAGTGGGTCTTGCTTCTGTGGCTTACATACATTCAAAAATGATTCTACAGCATGGTATAAAAGTTGTGTTCTAGGGAAGTGGCACATGTTAGCACAGCATAAAAAGGAAAATAAGATGCTTATGTTGGGACATAAGGATTAGTTTCTGATAACCTATATTGCATTACAATCTTCAACATAATAACACTTTGTTTTGACATGTGGCATAGACCATTGTCTTCCACTCTAGAGTCCTAGAATTTAAGAAATTTAGAATGTTAACATGTCATGCTCTTATTGCCTCTCTAAAGTGACTATCCCAGTGGCTCCTCTGAGCAGTAGCTTCTGGGAAAGACAAGAAATTGGTGCGTACTTGTCCATTAAACTAACCTTGCGTAATTTGATTGAAACGATAAACAAGAAGAAAATAAGAGAGATGCATATAGGTATTTTAGCTATATAATTTTGCATGGAATGATGCTTTGTGCTTTTCGTTTCATCGCCAGTTTAGTCACAACTGATCAACTGGCTGTGCTGGTCTGTTATTCCCACACTGAGCATAACTGGCACATATGGTCATGGTGCTATAGATTAGGAAAAGTACGCACAAGTGGGTGTCCCAAAGTAACCTATCTGAGTCTTATATTATCGACTGCATAGAGTGTTTGTTGGTCAATTTTGAAAAATGGAGCATAACAAAAATTAGATTTCGTTATCCATTTCATCTTCTCTTACTGTTGGTCTTATGGTTGTGACATGGGATGCATATTGTTTGAAAAACATTCCATTACGTTCATTACTCATATTAAGGTGTTTTTGTTGGTTAAGTATTGTTCTTAATTTGTTACTTTAGCCTGTAGGAAAATATTCCTCTAGAATTACGAGGCAACTTATTGTAATTTTAATAATTTTCTCTTTTCGTTTGCTGGTTTGAACCTGCAGGATTAGTATTCCTTACCCTTTCCAATGGGGACCTCCTTCATTCAATGCTGGTGAAGCATTTGCTATGATGATGGCTAGTTTTGTTGCTCTAGTAGAGGTTTGTTCACCTGTCAGGGCTTGGTCAAAGATATTGTAAATATTTTAGTTTCAGGCTGTTTTCTTTGCTAATTCCACTATGATCCGGATTGTCTTACATTTTGTCTACTTCAGTTATTGTTTTTATGAAACGTTTAGTTGTTGTTACAGATGTTCTGAGTTACTACTTCTCAACCTTCGTCTGCTTCCTCTTTCTTTGTGCTGTCCCTTTTTTTTTTTTTACCTGTTTGCATCCTTTTTCCAATTTTTGTGTGATGTCACACCTCCTTTTAGCCATTTTTCTGAAGAAAAAAAAAGAGATACTTATAAGCTCTGAAAGAGATAGGCTTTAAACTAACTTCCTTTCACGCTTGTGCTTTGGTGTTTTCAGTCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTTAGTCGTGGTGTTGGTTGGCAGGTAAACATGATTTCTTTCTCAAATTTCTCCTATCCCTCTCGCCCTCCTGTAAAAGTGAAAATAGTAAGGGAAGTTCTGCTGCATTTCATTGAAGGGGAGCCTTACTCTGAATCAAATGCATAGTCTTTAGGGAGGTTTATCTGAAGCCGTATGTAGATTAGGAGAACTACACTAAGTTGGAATGTCATCACACTCATCCAGTATCAGCATTGTCAACAATCATCATAAATTCACAGTAAGAATTATGAACTGTTTTTAATTATCCCAACGCCCAACTCTAACTAGAATGCTTTCTTTCCATAACTGATACAATTAGTCAAAATCTTTGACCACTCAGATGCAATTTTGCTACCAAACATGTCTATCTGTGGTCCAATTTGAGTAAATTTTGCAGTTGATCCACTTTGGGTGTGACAGTACATGGCGGATAGGATATTTCTTCTGTTAGTGGATATCATACGTTATGTGGTTAAGGGATTGGAACAGCCAAAATTCCTGCATCCTATTTAAAGACCTATGCCTTGGAACTCAATAATTCTCTCTCTTGCTTCCTACACGTTTTCTGAAAATATTCATCTTCTTCTTCCACGCGTTGTCTTTCGTTTTCTACCATTCATTTAGCCACAAATTCTTTTATCTTGGAAAATTAGACACATAAATTAAACACTTAAATGCTGTTGTTACAGGAATATTCTCCTATAAACTTTTCATAATTAAGTGAGTTTTAGTATGCGATAGCATGGTATTTATCATTTTTACCAGATTACCATTTAAACATATCAATAGATTTACCTGTATACCTTTTACACTTCGAGTGCATAGAAGTTAAACTCTATTGCATTATATCATGCTTTTACAGTACATAATTTATTGAATGCAAGCAAGGGGCTAGAAAGACAGCTCAATAAGGGCTTACTCAGTTTATCAAATGCTCCCAGACTAGTTGGGGGTAGCAGAGAGAGTGCACTGGATGTATATTTAGCAACCTTCCTATCACCCTCATTGAATGATACTTCGGGATCATGGGAAAATTAAAAAGTTTTTTAAAGTAATTTTTTTAAAGTTTCATTCTTTTTTAGGGTGGGGGTAGGTCAGATTGGAAAAGGAGGAAATCTATCTTGTTTATCTTAATGAGGTTCGCGGGAAGTGCCATTGTTTCTCTTCCCCTACCATTTGCTATTTCTTCATACCTTGCTTTCTTTAATTTAGATACATTTTGTTTTTGCCTCAGGGAGTTGGCATTCTACTATCAGGATTATTTGGCACTGGGAATGGATCTTCTGTATCCGTGTAAGTCCAGACAAAAACCTTCTGCAACTTGACACTGCCTTGTTATGATAGTTGACTAAGTCGACTCACTTTTGTGTACATGCAGGGAGAATGCTGGTCTATTAGCATTGACACGTGTTGGCAGTAGAAGAGTTGTTCAGATATCTGCTGCGTTCATGATTTTCTTTTCAATTCTCGGTAAATCACCACTCTTAACACTTAGTTTGAGCAATTCTTGTGGGTTATCTTGATACTTGATTCTCTTTACCCTCTGTCGATTTGTCTTGACAACCACATTATCATCAGGGAAATTTGGAGCTGTCTTTGCTTCAATTCCTGCACCTATTGTTGGTGCTTTATATTGCCTTTTCTTCGCTTATGTAGGTATGTATATCTTTTAAGGCAAGCATATGCCCGGGATCACTGCTATCCCAAAATATTTCATGTTATGGAAAGCTTGGGAATTATGGTTTCTTATGTTCTTTCTTCGCAGGCGCTGGAGGCTTAGGTTTTCTTCAGTTCTGCAATCTTAATAGTTTCCGCACCAAGTTTATATTAGGTTTCTCCGTCTTTCTTGGCTTGTCCATTCCACAGTACTTCAATGAGTATACTGCTGTTGCTGGTTATGGACCTGTTCACACACATGCAAGATGGGTATAGCAAAATTAACATCATTTTATGAATGTCCTAACATTTGACTTATGTTACATTAAGAGCTTTTGTGGTTTGTTATTCTCTTTCAGTTCAACGACATGGCCAACGTTCCCTTTCAATCAAAAGCTTTTGTGGCGGGTATCGTTGCCTTTTTCCTGGACAACACAATGCACAAAAAGGATGGCCAGACAAGAAAGGACAGAGGCAAGCACTGGTGGGACAAATTCAAGTCCTTCAAGACTGACACGAGAAGTGAGGAATTCTACTCCCTCCCTTTCAATCTGAACAAGTATTTCCCATCTGTGTGATTTGGCGACGCCACGGACACAAAGGTTTCATCTTTTTACTAGTAAGTACTAGAGTTCATCTGTGCTTGTTGGAGAGGGGGGGAGGTAGGTTGCTGCTGCAACATCAATTTTCTTCTTTCATGAGAAATGAAGTATGAAGAAGCTTAGAACAACAGTTATTAGTTTAAGTATTTCCTACTGTTGTAAATTTATGGATCATTTGGATTCAACTTTAACTAGCAATTGAGCAAGCAATCCTTTTATGAATTATAATTAGCAGTAAATCAGTGTACAACAAAACACTAGGACAATTTTTTTTTTTGTCTTGCATGAAAAAAATAGAAAAATTGTAAAATGGTTTTTAAATTATGTGAAATCAAACAAA</genome_strand>
        <mrna_strand>TGGAGGAGGAGGAGCAGCTCCAGCAGCAAAGGCAAGTGAACCAGTGCCACATCCACCAAAAGATCAGCTTCCTAATGTTTCTTACTGCATTACTAGTCCTCCCCCATGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGCTATTCTTCTTGGATTTCAGCATTATCTTGTTATGCTTGGTACCATTGTTATCATTCCTACAGCTCTAGTTCCCCAAATGGGAGGTGGAAAT.............................................................................................................GAGGAAAAAGCCCAAGTTATTCAGACATCGCTATTCGTCGCTGGGCTGAACACCTTGTTGCAGTCTATCTTTGGGACTAGATTGCCTGCTGTGATTGGAGGGTCTTATACCTTTGTTGCACCTACAATCTCGATTATCCTTTCTGGACAATGGAATGATGAAGATCCTGTGTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCAAGAAGATAATGCGGGCCACCCAAGGTGCCCTTATTGTTGCTTCAACCCTTCAGATTGTCCTAGGCTTCAGTGGTCTCTGGCGCAATGTTACAAG......................................................................................................................................................................................................................................................GTTTCTGAGTCCACTTTCAGCTGTTCCTTTGGTTTCTCTTGTTGGCTTTGGTCTTTATGAGTTTGGTTTTCCTGGG................................................................................GTTGCCAAATGTGTTGAAATTGGGTTGCCAGAGCTAGTCCTTTTAGTCATTTTCTCTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGGCACACCTGATACGTCCAGGGAAGAATATATTTGATCGTTTTGCTGTTCTTTTCACGGTGATCATTGTATGGATTTATGCACACCTACTCACTGTGGGCGGGGCTTACAATGGAAAGCCACCGAAGACACAAGCAAGCTGCAGAACTGACCGTGCTGGACTCATTAGTGGTGCTCAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAGTATTCCTTACCCTTTCCAATGGGGACCTCCTTCATTCAATGCTGGTGAAGCATTTGCTATGATGATGGCTAGTTTTGTTGCTCTAGTAGAG.................................................................................................................................................................................................................................................................................................................................................................................TCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTTAGTCGTGGTGTTGGTTGGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTGGCATTCTACTATCAGGATTATTTGGCACTGGGAATGGATCTTCTGTATCCGT.....................................................................................GGAGAATGCTGGTCTATTAGCATTGACACGTGTTGGCAGTAGAAGAGTTGTTCAGATATCTGCTGCGTTCATGATTTTCTTTTCAATTCTCG............................................................................................................GGAAATTTGGAGCTGTCTTTGCTTCAATTCCTGCACCTATTGTTGGTGCTTTATATTGCCTTTTCTTCGCTTATGTAG.............................................................................................................GCGCTGGAGGCTTAGGTTTTCTTCAGTTCTGCAATCTTAATAGTTTCCGCACCAAGTTTATATTAGGTTTCTCCGTCTTTCTTGGCTTGTCCATTCCACAGTACTTCAATGAGTATACTGCTGTTGCTGGTTATGGACCTGTTCACACACATGCAAGATGG.........................................................................................TTCAACGACATGGCCAACGTTCCCTTTCAATCAAAAGCTTTTGTGGCGGGTATCGTTGCCTTTTTCCTGGACAACACAATGCACAAAAAGGATGGCCAGACAAGAAAGGACAGAGGCAAGCACTGGTGGGACAAATTCAAGTCCTTCAAGACTGACACGAGAAGTGAGGAATTCTACTCCCTCCCTTTCAATCTGAACAAGTATTTCCCATCTGTGTGATTTGGCGACGCCACGGACACAAAGGTTTCATCTTTTTACTAGTAAGTACTAGAGTTCATCTGTGCTTGTTGGAGAGGGGGGGAGGTAGGTTGCTGCTGCAACATCAATTTTCTTCTTTCATGAGAAATGAAGTATGAAGAAGCTTAGAACAACAGTTATTAGTTTAAGTATTTCCTACTGTTGTAAATTTATGGATCATTTGGATTCAACTTTAACTAGCAATTGAGCAAGCAATCCTTTTATGAA-TAAAAAAAAAAAAAAATCAGTGTACAACAAAACACTAGGACAATTTTTTTTTTTGTCTTGCATGAAAAAAATAGAAAAATTGTAAAATGGTTTTTAAATTATGTGAAATCAAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334849" ref_strand="+" ref_description="SGN-U334849        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G49990.1 | Symbol: None | xanthine/uracil permease family protein, similar to permease 1 (Zea mays) GI:7844006; contains Pfam profile: PF00860 Xanthine/uracil permeases family | chr5:20354867-20359077 REVERSE | Aliases: K9P8.13, K9P8_13 (evalue: 3e-44, score=175) genbank/nr: gi|62733642|gb|AAX95758.1| putative permease 1 [Lycopersicon esculentum] (evalue: 2e-54, score=215)">
      <seq>aattcggccgagggaagctttcttcttggatttagcattatcttgttatgcttggtccattgtttcattcctacagctctagttccccaaatgggaggtggaaatgaggaaaaagcccaagttattcagacatcgctattcgtcgctgggctgaacaccttgttgcagtctatctttgggactagattgcctgctgtgattggagggtcttatacctttgttgcacctacaatctcgattatcctttctggacaatggaatgatgaagatcctgtgtcgaaattcaagaagataatgcgggccacccaaggtgcccttattgttgcttcaacccttcagattgtcctaggcttcagtggtctctggcgcaatgttacaaggtttctgagtccactggtgcttttattgcagnngcaagatatgcaagtgccactcccttaccaccatccatacttagtcgtggtgttggttggcagggagttggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0197N20.1" temp_strand="-" temp_description="C06HBa0197N20.1  AC211062.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0197N20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68169" stop="62699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67871" g_stop="67774" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="105" r_length="94" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67773" i_stop="67665" i_length="109">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.564" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67664" g_stop="67491" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="279" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67490" i_stop="66409" i_length="1082">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66408" g_stop="66308" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="380" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66307" i_stop="66062" i_length="246">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66061" g_stop="66053" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="389" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66052" i_stop="63089" i_length="2964">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63088" g_stop="63002" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="476" r_length="87" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0197N20.1" gen_strand="-" ref_id="SGN-U334849" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0197N20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67871" e_stop="67774"/>
          <exon e_start="67664" e_stop="67491"/>
          <exon e_start="66408" e_stop="66308"/>
          <exon e_start="66061" e_stop="66053"/>
          <exon e_start="63088" e_stop="63002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGCTATTCTTCTTGGATTTCAGCATTATCTTGTTATGCTTGGTACCATTGTTATCATTCCTACAGCTCTAGTTCCCCAAATGGGAGGTGGAAATGTGAGGCCTCCAGACACATTGAACGACTTATTTACTTAAGATATGAGTTTCTCTTTTGACCTCACGTAATGTTATACATTTTAACTGGAAGACTATCTGCCCGTTGCAGGAGGAAAAAGCCCAAGTTATTCAGACATCGCTATTCGTCGCTGGGCTGAACACCTTGTTGCAGTCTATCTTTGGGACTAGATTGCCTGCTGTGATTGGAGGGTCTTATACCTTTGTTGCACCTACAATCTCGATTATCCTTTCTGGACAATGGAATGATGAAGATCCTGTGTCGGTTAGTGTCCTCAAACACCAGTCATTTTCTCTTTATTCTTTGGATCATCTAGTGAACTTATTGGTTGATTGTCAAGGACAAAAATTGAGATATTGGTTAACTTATATACTCAAAGGCCAGCTCCCAAAATCCTTTTCGAAAAGTTAGAAATTAAATTACAGCCTTCCTTGTTTTTCCCCTCTTGGGTCATTTAGGTTCCCAATTCTAAACCAATTTTTTGCACTCCCTGTCTGATCAGATTTCTTGGCACAATCACTCCACCACTTTTCTTCTTTTCTCTTTATTTGGTCCATATGGTGTAACAACTACTTTTTGTTACCTTTTGACTATTTGTAAATATGTTTAGTCCATTTTTTCTCATAATTTCAGCAATATGAAAGTGTGTACATTGTTTTAGGGTTGTAATGGTATTTCTCCAAACAATTGAATCAAAATCACAACTTCTCAATTTTGTAAAAAATATACAAGTACCAATTTTTTCAATAACCAAATCCATACACTAACAATAATTTTCCATAATATCACTTTGAGAAAACAAATTAATATACCATCCAATTGTCAAAAGAAGCTGATGCACAAATTTAAACCTTTTTGGAGTAATGTGGTCATGCCAGGAGATGTTAAAAGTTTACTACCGAGCAGTGTCTAGGGTTGATAAAAGACTGAAGTTACTGAAGAAGACAGTTACTCTACATATTTTGTGGATTGTTTGGATAGAAAGAAAAAGAGATGTTTTGAGGAAAAGGTAGAACACCTTTATTTTCTTAAAAATAGATGCTTACTAATTTATACTCATGGTGTAAGGGTCGTATCGTATGACAGACGGTTTAGTTCAGCTATTTTTTTCTTTTCTCATATGGTACTGAGATATAATTAATTTTACATTACCTTATCTAAAAAAAAGGAAGAATAAAAAACTGATGCAGAAATAGTTTACTTTCAACTTGATAATTCATGTCAGTGTATATTCCTTTAACTTCTTTAATAGCCAGGAAGACGCTTAGAGACACAAAGGAAGTCATCCAATTCATCTTGGTGATATTGGATCTTAGTTTATTGTTAATATTTCTCTGTTTATTCAGAAATTCAAGAAGATAATGCGGGCCACCCAAGGTGCCCTTATTGTTGCTTCAACCCTTCAGATTGTCCTAGGCTTCAGTGGTCTCTGGCGCAATGTTACAAGGTTTGTTACATCACAAGATTTCTCCCTCCATTTGAGCGATTTCTCATAATGCTACCTAACTTTATACCATCAATTATGCACGTTCTTGCCTGCTCTTGGATATTCTTATGCTATACTTTGTGAGCAAGTTCTCTAAGTCTAAGGGTCACTTTCTTGTGGTTTAAGGTCTGTTCAGTTATGTTAAGTGCTTTGTGTTCGTACAGTGTGCTAGCTCTGATTATCATTTTACTTCATGTGGATTCTTAGGTTTCTGAGTCCACTTTCAGCTGTTCCTTTGGTTTCTCTTGTTGGCTTTGGTCTTTATGAGTTTGGTTTTCCTGGGGTAAGCAGAAACTCACCACACTTATCTTGCATTGATATTCATCCAATGATGATTGTTGAATTTGTTTCATCTCTGTTTAGGTTGCCAAATGTGTTGAAATTGGGTTGCCAGAGCTAGTCCTTTTAGTCATTTTCTCTCAGGTAAGTTGTTTTGTCGAGATATCATATATATCTCGTAAACATCATATATATATATATATATATATATATATATTGGGAAGCTCCAAAGTGAAAAGTTGAATTATCATTTTGCCCTTTTATTAAATTAAAACTTATATAATTTTCAAAATCTTGACCTTTCAAATTTCTCACACAAATTTTAAGAAAATACAAATGAGTAATTATTCCTTAAAGACAAGAAATTAAAGTAGATTCATGTATCTTTTAAAATTAAATTTCATCTCAATCTTTTTTATATTTATTTTTATAATATTTGACCTTTCAATTTTTCATGTGTATTTTCATGTTTCCATAATTTTGTTCTATAAATTTAACTTTTCCAAGAAAAACTTTTATTTACTATTCCTACAATACTTGTGTGTAGGGACTCTAAAATTTATTTCACGCATTATATTTTCTTATCTCATCTTCCAATAGTAACTTATTTTTACATTTTTCATTCATATTTTAATATATAAAATTTCTTTGTTATTATTGGTTGTACATAGTTTAATCTTCTCAATGATATTTATTCTGATCAATCTTTTCACATCGTTAGATACTCTATAAAGTGTATCATAAGTTTGGTTTATCCAATTATTTCATTTGTCTTCTTTGGTTAAATTTCTCCTCCAAAAAGAGTCTACTTCACGTAAAGCTTATTTCAATATAATTGATTTAGCTACAAATATTGACCAACACTTTTTGTATTATTGTTAAGCTAGCAGCATATTCACTTCTTTTTAGTATAATATCTATTTATGAAAAGTTTCTGTTGCAATAGAACTCAAAATTCAGATATAAGTTGATCTGTGAATGTCTTTGCATATTTGAATTTTGAAATGTGGACATGGACTATGTTTGGAGCACACAGGTTCATAATTGATTGTGTGTTTGTAGTTTAAAATGGTATGAAATACACGTGCGTTGCACGTGTTCGAGAACTATTTATTTAAACACACTACATAGTAGGATATAAGTTACACATTCTTAATAAAACACTGGTTTTTGCAGTATCTGGCACACCTGATACGTCCAGGGAAGAATATATTTGATCGTTTTGCTGTTCTTTTCACGGTGATCATTGTATGGATTTATGCACACCTACTCACTGTGGGCGGGGCTTACAATGGAAAGCCACCGAAGACACAAGCAAGCTGCAGAACTGACCGTGCTGGACTCATTAGTGGTGCTCAATGGCACGTGCTCCGCTCCTTCATTTTTCACTTTTCTAATGTACTGGCATGGGTTAAATATTTGTGTGGATATGCAGATCTTTTTGGTATTTTAACATTTATGCGGTCCCAAAGATACGGAACTCCTTGGTAAAAATTACAACTTTGTAAGTGTAAGAGTGGGTCTTGCTTCTGTGGCTTACATACATTCAAAAATGATTCTACAGCATGGTATAAAAGTTGTGTTCTAGGGAAGTGGCACATGTTAGCACAGCATAAAAAGGAAAATAAGATGCTTATGTTGGGACATAAGGATTAGTTTCTGATAACCTATATTGCATTACAATCTTCAACATAATAACACTTTGTTTTGACATGTGGCATAGACCATTGTCTTCCACTCTAGAGTCCTAGAATTTAAGAAATTTAGAATGTTAACATGTCATGCTCTTATTGCCTCTCTAAAGTGACTATCCCAGTGGCTCCTCTGAGCAGTAGCTTCTGGGAAAGACAAGAAATTGGTGCGTACTTGTCCATTAAACTAACCTTGCGTAATTTGATTGAAACGATAAACAAGAAGAAAATAAGAGAGATGCATATAGGTATTTTAGCTATATAATTTTGCATGGAATGATGCTTTGTGCTTTTCGTTTCATCGCCAGTTTAGTCACAACTGATCAACTGGCTGTGCTGGTCTGTTATTCCCACACTGAGCATAACTGGCACATATGGTCATGGTGCTATAGATTAGGAAAAGTACGCACAAGTGGGTGTCCCAAAGTAACCTATCTGAGTCTTATATTATCGACTGCATAGAGTGTTTGTTGGTCAATTTTGAAAAATGGAGCATAACAAAAATTAGATTTCGTTATCCATTTCATCTTCTCTTACTGTTGGTCTTATGGTTGTGACATGGGATGCATATTGTTTGAAAAACATTCCATTACGTTCATTACTCATATTAAGGTGTTTTTGTTGGTTAAGTATTGTTCTTAATTTGTTACTTTAGCCTGTAGGAAAATATTCCTCTAGAATTACGAGGCAACTTATTGTAATTTTAATAATTTTCTCTTTTCGTTTGCTGGTTTGAACCTGCAGGATTAGTATTCCTTACCCTTTCCAATGGGGACCTCCTTCATTCAATGCTGGTGAAGCATTTGCTATGATGATGGCTAGTTTTGTTGCTCTAGTAGAGGTTTGTTCACCTGTCAGGGCTTGGTCAAAGATATTGTAAATATTTTAGTTTCAGGCTGTTTTCTTTGCTAATTCCACTATGATCCGGATTGTCTTACATTTTGTCTACTTCAGTTATTGTTTTTATGAAACGTTTAGTTGTTGTTACAGATGTTCTGAGTTACTACTTCTCAACCTTCGTCTGCTTCCTCTTTCTTTGTGCTGTCCCTTTTTTTTTTTTTACCTGTTTGCATCCTTTTTCCAATTTTTGTGTGATGTCACACCTCCTTTTAGCCATTTTTCTGAAGAAAAAAAAAGAGATACTTATAAGCTCTGAAAGAGATAGGCTTTAAACTAACTTCCTTTCACGCTTGTGCTTTGGTGTTTTCAGTCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTTAGTCGTGGTGTTGGTTGGCAG</genome_strand>
        <mrna_strand>GGGAAGCT-TTCTTCTTGGATTT-AGCATTATCTTGTTATGCTTGGT-CCATTGTT-TCATTCCTACAGCTCTAGTTCCCCAAATGGGAGGTGGAAAT.............................................................................................................GAGGAAAAAGCCCAAGTTATTCAGACATCGCTATTCGTCGCTGGGCTGAACACCTTGTTGCAGTCTATCTTTGGGACTAGATTGCCTGCTGTGATTGGAGGGTCTTATACCTTTGTTGCACCTACAATCTCGATTATCCTTTCTGGACAATGGAATGATGAAGATCCTGTGTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCAAGAAGATAATGCGGGCCACCCAAGGTGCCCTTATTGTTGCTTCAACCCTTCAGATTGTCCTAGGCTTCAGTGGTCTCTGGCGCAATGTTACAAG......................................................................................................................................................................................................................................................GTTTCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACTGGTGCTTTTATTGCAGNNGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTTAGTCGTGGTGTTGGTTGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334850" ref_strand="+" ref_description="SGN-U334850        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G62890.3 | Symbol: None | similar to xanthine/uracil permease family protein [Arabidopsis thaliana] (TAIR:At1g10540.1); similar to xanthine/uracil permease family protein [Arabidopsis thaliana] (TAIR:At1g60030.1); similar to xanthine/uracil permease family protein [Arabidopsis thaliana] (TAIR:At5g49990.1); similar to putative permease 1 [Lycopersicon esculentum] (GB:AAX95758.1); similar to putative permease [Oryza sativa (japonica cultivar-group)] (GB:XP_482444.1); similar to putative permease 1 [Oryza sativa (japonica cultivar-group)] (GB:XP_450798.1); similar to putative permease 1 [Oryza sativa (japonica cultivar-group)] (GB:XP_467723.1); similar to putative permease [Oryza sativa (japonica cultivar-group)] (GB:NP_910042.1); contains InterPro domain Xanthine/uracil/vitamin C permease family (InterPro:IPR006043) | chr5:25260477-25264068 FORWARD | Aliases: None (evalue: 6e-29, score=124) genbank/nr: gi|62733642|gb|AAX95758.1| putative permease 1 [Lycopersicon esculentum] (evalue: 3e-30, score=135)">
      <seq>tggaggaggaggagcatttccagcagcaaaggcaagtgaaccagtgccacatccaccaaaagatcagcttcctaatgtttcttactgcattactagtcctcccccatggcctgaagctattcttcttggatttcagcattatcttgttatgcttggtaccattgatatcattcctacagctctagttccccaaatgggaggtggaaaagaggaaaaagcccattttaatctgacatcgctattcagtcgctgggcagaataccttgttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0197N20.1" temp_strand="-" temp_description="C06HBa0197N20.1  AC211062.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0197N20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69924" stop="67471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69624" g_stop="69515" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69514" i_stop="67872" i_length="1643">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67871" g_stop="67774" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="208" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67773" i_stop="67665" i_length="109">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.564" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67664" g_stop="67603" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="271" r_length="63" r_score="0.855"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0197N20.1" gen_strand="-" ref_id="SGN-U334850" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>270</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0197N20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69624" e_stop="69515"/>
          <exon e_start="67871" e_stop="67774"/>
          <exon e_start="67664" e_stop="67603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGGAGGAGGAGCAGCTCCAGCAGCAAAGGCAAGTGAACCAGTGCCACATCCACCAAAAGATCAGCTTCCTAATGTTTCTTACTGCATTACTAGTCCTCCCCCATGGCGTAAGTTTCTTTACATCTCTTTCCCTTTTATGCTACCCCACTACATTGCTTTGTGTTTTTATTATCTTTTTTGATTTTGGGGGTGTAATAATGGGTACTTGTTAGTTTCTTTGAGCAGACGACTGAGTGATGAATGGTTCAGGTTCAGGTTCAGGTTCGAATCTCAACTTAATGTGAGCTCATAGGAGCTAAGGGTTGGGACAATGTGGGATAGTATGGCTAACAGGTGGATTAATCGAGGTGCATACAAGCTAGTCTAGATGCATATGGTTTATGGGTTATGGTTCTTGTGAACCCATTTTTTTTCTTTCTTGAAGATTGCACTGTACTACTTGATAACACAATCACTTGTTCTGGTTTCACATTTTCTGTTTTCTTCAAAGGTGTATGGCATGTTATGCTTTGGGTTCATGGGGTTTATGTTTTTAGCTAGCAAATTGGAATCTGAAACGGGTCTAGCAGCTCCCAGAATGTGCACCCTATTGAAAAGAATAGTAAAAGTTACTCATTCCACTTGAGGATGCCATTTTTGCCTATAAATCAGCCATTTGGTTCACCTCTCTGAAACAATGGCGTACTTGTGTTTCATCTATGTCCATGTTGAGCCTTATTTCCCTGATGATCTCTTTGAGTTTAAGGTTGGAATTGTTCTCTTCTTTTATCATTAGCAATAACCATAGAGTCCATCTCCAAGTCCAGTTGATATTGTTTTGATTGCACCATTGAACACCATATCTAACAGCTTCAGCTTCTACTTGATTGTTACTTTGACAACATATTGGAATTGAATAGGCCATTACAAGATCTCCAACTGCATCTCTAATGATAATCCCAATTCCAGCTCTGTTATTGCTTCTTAAAAAACTACCATCACTATTGAGTTTGAATCTTCCCTCAGTAGGTTTTTTCCAGACAACGACCTTACAACTCACCACTGGTTTCATTCTTTCCACAGTTTGACAAATATGTAGCCATGTGTAGTTATCATCAAACAATTTGCATTTAGGGAAAACTATACCAATAGCAGCTTTAATACTCCACAAAATTTAGTTTCCGTTCTTTTAGTATTGAACTTCTTGGTGAAGAATCATTGGATTGTATTTCATTCAACAAATTGAGACTAATTTGGTTGTATTGTGGATGGAGTCTATTTTATTTATACATCTCAAGGGTGTGTGTATCTTATACATGAAAAACTAATGTAAGATATTAGGTAGTCTGGGTTTGCTAGGCCTGGGTGCCATATATCATAAGACAATAAGGGGCCGTTTAGTTACGGTATAAGAGGGCATGTTATTAAACACAATGTGTATTGACCATCACTTGTTCTGGTGGGCATGTTATTAAACACAATGTGTATTGACCATCACTTGTTCTGGTTTCACATTTTCTATTTTCTTCAAAGATAAATTACTGGCGATTTGTCTGTGTCATGTTATGCTTTGGGTTCATGGGGTTTATGTTTCTAGCCAGCAAATTGGAATCTAAAACTGGTTTGATATGGGAAGCAGCTCCCAAAATGTGCACCCTATTTTCTTGGTACTGTTTGGTGAAGAATAATTAGATTGAACCTATATGTTTTAAATTGGTTTCGCCATGTTTATTGTGGACCAAGCTGATTTTGTGTAATTGTTGGGATGCAGCTGAAGCTATTCTTCTTGGATTTCAGCATTATCTTGTTATGCTTGGTACCATTGTTATCATTCCTACAGCTCTAGTTCCCCAAATGGGAGGTGGAAATGTGAGGCCTCCAGACACATTGAACGACTTATTTACTTAAGATATGAGTTTCTCTTTTGACCTCACGTAATGTTATACATTTTAACTGGAAGACTATCTGCCCGTTGCAGGAGGAAAAAGCCCAAGTTATTCAGACATCGCTATTC-GTCGCTGGGCTGAACACCTTGTTGCA</genome_strand>
        <mrna_strand>TGGAGGAGGAGGAGCATTTCCAGCAGCAAAGGCAAGTGAACCAGTGCCACATCCACCAAAAGATCAGCTTCCTAATGTTTCTTACTGCATTACTAGTCCTCCCCCATGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGCTATTCTTCTTGGATTTCAGCATTATCTTGTTATGCTTGGTACCATTGATATCATTCCTACAGCTCTAGTTCCCCAAATGGGAGGTGGAAAA.............................................................................................................GAGGAAAAAGCCCATTTTAATCTGACATCGCTATTCAGTCGCTGGGCAGAATACCTTGTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342914" ref_strand="-" ref_description="SGN-U342914        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: LacOPZ-alpha(evalue: 1e-13, score=79)">
      <seq>ggtgcagaagttgtatgagcgatccatccgaatgaggacaagattcaagcttagcttcttatattctttctatgtgatagatgtgaaaaccaaacaagactggtgtttgatgatatgtaagttggcttcatgttatataaacgtgagaatcattaaattagtggtcattgtttggcacaaaatctggcgtcaacgtgtgtgtattatataaaaagacatgggcaagtagtccatgtgtatgagtcagttttttttcccccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0197N20.1" temp_strand="+" temp_description="C06HBa0197N20.1  AC211062.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0197N20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78956" stop="79812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79256" g_stop="79516" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="262" polyA_stop="279"/>
      <MATCH_line gen_id="C06HBa0197N20.1" gen_strand="+" ref_id="SGN-U342914" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0197N20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342914" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="79256" e_stop="79516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCAGAAGTTGTATGAGCGATCCATCCGAATGAGGACAAGATTCAAGCTTAGCTTCTTATATTCTTTCTATGTGATAGATGTGAAAACCAAACAAGACTGGTGTTTGATGATATGTAAGTTGGCTTCATGTTATATAAACGTGAGAATCATTAAATTAGTGGTCATTGTTTGGCACAAAATCTGGCGTCAACGTGTGTGTATTATATAAAAAGACATGGGCAAGTAGTCCATGTGTATGAGTCAGTTTTTTTTACAAGG</genome_strand>
        <mrna_strand>GGTGCAGAAGTTGTATGAGCGATCCATCCGAATGAGGACAAGATTCAAGCTTAGCTTCTTATATTCTTTCTATGTGATAGATGTGAAAACCAAACAAGACTGGTGTTTGATGATATGTAAGTTGGCTTCATGTTATATAAACGTGAGAATCATTAAATTAGTGGTCATTGTTTGGCACAAAATCTGGCGTCAACGTGTGTGTATTATATAAAAAGACATGGGCAAGTAGTCCATGTGTATGAGTCAGTTTTTTTTCCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319314" ref_strand="+" ref_description="SGN-U319314        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: | Symbol: None | bromo-adjacent homology (BAH) domain-containing protein, contains Pfam profile PF01426: BAH domain | chr3:17744518-17750397 REVERSE | Aliases: None(evalue: 2e-111, score=400) genbank/nr: gi|62733641|gb|AAX95757.1| putative BAH (Bromo adjacent homology) domain-containing protein [Lycopersicon esculentum] >gi|62183957|gb|AAX73298.1| putative BAH domain-containing protein [Lycopersicon esculentum] (evalue: 0, score=1484)">
      <seq>atgtttctccccaacgagatagcccttcatgtggggagacctgcacaggtgatgagcttaagccaaagacatctgctgtagatagttcttcaggtaaccatagtgggcgaaatgacagcgatgctaatggtgataaagagaaacagttcgttgttgctaatacgtcgtggtctgagggtaaagtacatgctaatagaagtgcaatgacggattttaacagagaaagaaggccctcttcatctccttctgaagaaacaaccacgggagagtgctttaattcatcctgcactgattcacagatggctggaaatttgaaatcaggtgttaatgagaagttagttgagatggcaaagtctgctgcggctccttgcaatgtattcgaaaaagcaagtgatggtgaacagagcagacaattccatgaggaaaaagtaatttccactaagacacttgataatgttctagatggcgaatcaggtggacatggtagttcaataggagaggacaaagtcactaatggccttgtaagcatagaaggcttgaaacgaccagttggaatttctgcttttaaatatgagggcgacgacaaaaatgatgtgagtagggtgttaggtgttgctagtacagaggtgaaaccgccttcagttgtggtgaaatctgaagctacagaaagaggtgacaaggaagagttgcaacaaactggttctagtcgagacactattgcagggaaaggtggacattctgatgaaatggatgcaaatagtgttttaaagtcagaacagccaaattctgataaaaagactgttgatacttcagttattgaggataaagccgcatctgaatgtaatttagctataaggaatttgacaaaggatgaacctaaagctgaagagatgacgaagcatgattctggcagtggattacttactaagaaagagacacctggattttctaatgcagaagtggaaaatttggaatcaagagaatctaaatactctggtgtagaggcagatagaccaaaggaatgcgtatccatcaaaggggaaaattcttcaagctctgctgctgctgccccagattcagcttcaaagatgaagtttgacttaaatgaaggttttatttctgatgaggggaaatatggggagtcaatcaactcgacaggccctgggtgtttgtcgaatgtccaaataatgagcccatcaacatttgctgtctcttctgtttccagtagccttcctgcttccattacggtggctgctgctgccaaaggaccttttgtcccaccagaagatctattgagagtcaaaggggagtttggatggaaaggatcagcagccacaagtgcatttcgtccggctgagccaagaaaaccccctgacatgcattcaaattccatgaccatctctgttactgaagcttcctccagcaagcatggtcgacctccattagatattgatctgaatgtagctgatgaaagagttttggaggatataaattctcaggattgtgctttagcaataggttctgcggtggaccatataactaatcttgtttcatcaaaaaataaatgttcaggccctcttcgtagttttggaggacttgatctcgatttgaatagagttgatgaacctaatgatgtaggtcaatgctccttgagtagcagtcatagattagagggtgctgtttttcccgcaagagcatcttcatccagtatcttgccaactgcagaagtgaggagggactttgatttgaataatgggcctggtgttgatgattcatgtgcagaacagcctctattccaccagagtcatcagggaaacatgcgctcccaactaaatgcttctagcctcagaatgaacaatccagaaatgggaaacttatcatcttggtttgctccagggaatagttactcaacgatgacaattccatcaatgttgcctgatcggggggagcagccaccatttccaataatcccacccggtgccccgcgaatgttaggtccatctgctgctggttccccttatactccagatgttttcaggggttcggtattgtcatcatcacctgctatgccttttcccgctgccccattccagtatcctgtgttcccttttggaactactttcccacttccctctggaacatatgctgttggatcaacctcttatattgattcatcctcgggtggaagacttttcactccgcctataaattcacagttgctaggtgctgtggcacctcaatacccaaggccttatatggtttcccttcccgatgctaacagcaatggagccaccgaccacaacagaaaacggagccggcaaggtctggatctgaatgcaggtcctggagctgtggacttggaagggaaagaagagtcagtttcgttggtaacgaggcaactggacgagcatgggaggatgtatcctgtagctggaggtctactgaagaggaaggaacccgagggaggatgggacagtgagagttacaggttcaagcaatcaccgtggcagtaggaatgcaaaaaaacctgcaacttggcgatcttgaagttgtcaaaggatggactatggtgggctcctcacaagtatcagcttctagtatgctcttgtggttgtgtgatgtgaccaatgatgtgttcagtccccaaccactatttctctcaatgtatgaaaggaaggaggatttcaatgggtttgtgagcacttttgtcaaccgtattgtctgggtggagacagatgagtcttccctctgtaaatattttaactgttggaaggcttgagatctgcaacacccggcaactgcggataagttgtcttatcgttggccaagatattgccagtggaggttggatttctggacagagtaaaatggaatgccttctatgttctttgttgctaatgatctttcttgctccctactttcttggctgttctctcctcttttttggcaattacataagtataaagaggttgacaccaaattttggtactaaagtgtccacctgccatgcttttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0197N20.1" temp_strand="+" temp_description="C06HBa0197N20.1  AC211062.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0197N20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85217" stop="89429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85516" g_stop="88064" g_length="2549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2549" r_length="2549" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88065" i_stop="88661" i_length="597">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88662" g_stop="89129" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="2550" r_stop="3017" r_length="468" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0197N20.1" gen_strand="+" ref_id="SGN-U319314" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>3017</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0197N20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85516" e_stop="88064"/>
          <exon e_start="88662" e_stop="89129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTCTCCCCAAGGAGATAGCCCTTCAGGTGGGGAGACCTGCACAGGTGATGAGCTTAAGCCAAAGACATCTCCTGTAGATAGTTCTTCAGGTAACCATAGTGGGCGAAATGACGGTGATGCTAATGGTGATAAAGAGAAACAGTTCGTTGTTGCTAATACGTCGTGGTCTGAGGGTAAAGTACATGCTAATAGAAGTGCAATGACGGATTTTAACAGAGAAAGAAGGCCCTCTTCATCTCCTTCTGAAGAAACAACCACGGGAGAGTGCTTTAATTCATCCTGCACTGATTCACAGATGGCTGGAAATTTGAAATCAGGTGTTAATGAGAAGTTAGTTGAGATGGCAAAGTCTGCTGCGGCTCCTTGCAATGTATTCGAAAAAGCAAGTGATGGTGAACAGAGCAGACAATTCCATGAGGAAAAAGTAATTTCCACTAAGACACTTGATAATGTTCTAGATGGCGAATCAGGTGGACATGGTAGTTCAATAGGAGAGGACAAAGTCACTAATGGCCTTGTAAGCATAGAAGGCTTGAAACGACCAGTTGGAATTTCTGCTTTTAAATATGAGGGCGACGACAAAAATGATGTGAGTAGGGTGTTAGGTGTTGCTAGTACAGAGGTGAAACCGCCTTCAGTTGTGGTGAAATCTGAAGCTACAGAAAGAGGTGACAAGGAAGAGTTGCAACAAACTGGTTCTAGTCGAGACACTATTGCAGGGAAAGGTGGACATTCTGATGAAATGGATGCAAATAGTGTTTTAAAGTCAGAACAGCCAAATTCTGATAAAAAGACTGTTGATACTTCAGTTATTGAGGATAAAGCCGCATCTGAATGTAATTTAGCTATAAGGAATTTGACAAAGGATGAACCTAAAGCTGAAGAGATGACGAAGCATGATTCTGGCAGTGGATTACTTACTAAGAAAGAGACACCTGGATTTTCTAATGCAGAAGTGGAAAATTTGGAATCAAGAGAATCTAAATACTCTGGTGTAGAGGCAGATAGACCAAAGGAATGCGTATCCATCAAAGGGGAAAATTCTTCAAGCTCTGCTGCTGCTGCCCCAGATTCAGCTTCAAAGATGAAGTTTGACTTAAATGAAGGTTTTATTTCTGATGAGGGGAAATATGGGGAGTCAATCAACTCGACAGGCCCTGGGTGTTTGTCGAATGTCCAAATAATGAGCCCATCAACATTTGCTGTCTCTTCTGTTTCCAGTAGCCTTCCTGCTTCCATTACGGTGGCTGCTGCTGCCAAAGGACCTTTTGTCCCACCAGAAGATCTATTGAGAGTCAAAGGGGAGTTTGGATGGAAAGGATCAGCAGCCACAAGTGCATTTCGTCCGGCTGAGCCAAGAAAACCCCCTGACATGCATTCAAATTCCATGACCATCTCTGTTACTGAAGCTTCCTCCAGCAAGCATGGTCGACCTCCATTAGATATTGATCTGAATGTAGCTGATGAAAGAGTTTTGGAGGATATAAATTCTCAGGATTGTGCTTTAGCAATAGGTTCTGCGGTGGACCATATAACTAATCTTGTTTCATCAAAAAATAAATGTTCAGGCCCTCTTCGTAGTTTTGGAGGACTTGATCTCGATTTGAATAGAGTTGATGAACCTAATGATGTAGGTCAATGCTCCTTGAGTAGCAGTCATAGATTAGAGGGTGCTGTTTTTCCCGCAAGAGCATCTTCATCCAGTATCTTGCCAACTGCAGAAGTGAGGAGGGACTTTGATTTGAATAATGGGCCTGGTGTTGATGATTCATGTGCAGAACAGCCTCTATTCCACCAGAGTCATCAGGGAAACATGCGCTCCCAACTAAATGCTTCTAGCCTCAGAATGAACAATCCAGAAATGGGAAACTTATCATCTTGGTTTGCTCCAGGGAATAGTTACTCAACGATGACAATTCCATCAATGTTGCCTGATCGGGGGGAGCAGCCACCATTTCCAATAATCCCACCCGGTGCCCCGCGAATGTTAGGTCCATCTGCTGCTGGTTCCCCTTATACTCCAGATGTTTTCAGGGGTTCGGTATTGTCATCATCACCTGCTATGCCTTTTCCCGCTGCCCCATTCCAGTATCCTGTGTTCCCTTTTGGAACTACTTTCCCACTTCCCTCTGGAACATATGCTGTTGGATCAACCTCTTATATTGATTCATCCTCGGGTGGAAGACTTTTCACTCCGCCTATAAATTCACAGTTGCTAGGTGCTGTGGCACCTCAATACCCAAGGCCTTATATGGTTTCCCTTCCCGATGCTAACAGCAATGGAGCCACCGACCACAACAGAAAACGGAGCCGGCAAGGTCTGGATCTGAATGCAGGTCCTGGAGCTGTGGACTTGGAAGGGAAAGAAGAGTCAGTTTCGTTGGTAACGAGGCAACTGGACGAGCATGGGAGGATGTATCCTGTAGCTGGAGGTCTACTGAAGAGGAAGGAACCCGAGGGAGGATGGGACAGTGAGAGTTACAGGTTCAAGCAATCACCGTGGCAGTAGGAATGCAAAAAAACCTGCAACTTGGCGATCTTGAAGGTGATATGAGATTCATTTACTTGTGGTTATGATGGTCTTCTTTATGATTTAAACTGTTAACCATTTTTGTCAATTATGATGTATAAGCACTGGAAAGTGATTAGATTCTAGGGATGTGCTTGGAAATACTTCGTCAAAATTGCATGTGACCTGCTGTGGTTGAGCTGCTTATTTGTTTGTTTACTTTCCTTTTGCCATGTAGTTTTTGCTCTTTTTTCGAACTCGCGTCCCTTCTGCCGGCCTTGTACACATGCAAGAAGGTGTTTGACAACTCATAATCTTTTAATTGTAGTTTTAATTGATCGGGAGAAAATGAAGATAAGTCAAAATTTTGGATATATATATTTGGGATCTTTCTCCTATTATCAATTAACACTTGGGGTGTTTCTCCCTCCTGAAAATGTGATTTTAATATGCCGTTAGGATATGTGTCATCTTTAAACAGAGGAATGAGTAGTTTCGTTCTGTGGAAAGTAATGCTTTGAAGTGTTAAGAGCTTGTGCATAATTCTTAGTACCATATTTTGAATTTAAGCATGATGAAGTATATTTGCTTCCTATTTGGTATGACACTTCCTTTTTTCCTTGCTTCTTGCAGTTGTCAAAGGATGGACTATGGTGGGCTCCTCACAAGTATCAGCTTCTAGTATGCTCTTGTGGTTGTGTGATGTGACCAATGATGTGTTCAGTCCCCAACCACTATTTCTCTCAATGTATGAAAGGAAGGAGGATTTCAATGGGTTTGTGAGCACTTTTGTCAACCGTATTGTCTGGGTGGAGACAGATGAGTCTTCCCTCTGTAAATATTTTAACTGTTGGAAGGCTTGAGATCTGCAACACCCGGCAACTGCGGATAAGTTGTCTTATCGTTGGCCAAGATATTGCCAGTGGAGGTTGGATTTCTGGACAGAGTAAAATGGAATGCCTTCTATGTTCTTTGTTGCTAATGATCTTTCTTGCTCCCTACTTTCTTGGCTGTTCTCTCCTCTTTTTTGGCAATTACATAAGTATAAAGAGGTTGACACCAAATTTTGGTACTAAAGTGTCCACCTGCCATGCTTTTATT</genome_strand>
        <mrna_strand>ATGTTTCTCCCCAACGAGATAGCCCTTCATGTGGGGAGACCTGCACAGGTGATGAGCTTAAGCCAAAGACATCTGCTGTAGATAGTTCTTCAGGTAACCATAGTGGGCGAAATGACAGCGATGCTAATGGTGATAAAGAGAAACAGTTCGTTGTTGCTAATACGTCGTGGTCTGAGGGTAAAGTACATGCTAATAGAAGTGCAATGACGGATTTTAACAGAGAAAGAAGGCCCTCTTCATCTCCTTCTGAAGAAACAACCACGGGAGAGTGCTTTAATTCATCCTGCACTGATTCACAGATGGCTGGAAATTTGAAATCAGGTGTTAATGAGAAGTTAGTTGAGATGGCAAAGTCTGCTGCGGCTCCTTGCAATGTATTCGAAAAAGCAAGTGATGGTGAACAGAGCAGACAATTCCATGAGGAAAAAGTAATTTCCACTAAGACACTTGATAATGTTCTAGATGGCGAATCAGGTGGACATGGTAGTTCAATAGGAGAGGACAAAGTCACTAATGGCCTTGTAAGCATAGAAGGCTTGAAACGACCAGTTGGAATTTCTGCTTTTAAATATGAGGGCGACGACAAAAATGATGTGAGTAGGGTGTTAGGTGTTGCTAGTACAGAGGTGAAACCGCCTTCAGTTGTGGTGAAATCTGAAGCTACAGAAAGAGGTGACAAGGAAGAGTTGCAACAAACTGGTTCTAGTCGAGACACTATTGCAGGGAAAGGTGGACATTCTGATGAAATGGATGCAAATAGTGTTTTAAAGTCAGAACAGCCAAATTCTGATAAAAAGACTGTTGATACTTCAGTTATTGAGGATAAAGCCGCATCTGAATGTAATTTAGCTATAAGGAATTTGACAAAGGATGAACCTAAAGCTGAAGAGATGACGAAGCATGATTCTGGCAGTGGATTACTTACTAAGAAAGAGACACCTGGATTTTCTAATGCAGAAGTGGAAAATTTGGAATCAAGAGAATCTAAATACTCTGGTGTAGAGGCAGATAGACCAAAGGAATGCGTATCCATCAAAGGGGAAAATTCTTCAAGCTCTGCTGCTGCTGCCCCAGATTCAGCTTCAAAGATGAAGTTTGACTTAAATGAAGGTTTTATTTCTGATGAGGGGAAATATGGGGAGTCAATCAACTCGACAGGCCCTGGGTGTTTGTCGAATGTCCAAATAATGAGCCCATCAACATTTGCTGTCTCTTCTGTTTCCAGTAGCCTTCCTGCTTCCATTACGGTGGCTGCTGCTGCCAAAGGACCTTTTGTCCCACCAGAAGATCTATTGAGAGTCAAAGGGGAGTTTGGATGGAAAGGATCAGCAGCCACAAGTGCATTTCGTCCGGCTGAGCCAAGAAAACCCCCTGACATGCATTCAAATTCCATGACCATCTCTGTTACTGAAGCTTCCTCCAGCAAGCATGGTCGACCTCCATTAGATATTGATCTGAATGTAGCTGATGAAAGAGTTTTGGAGGATATAAATTCTCAGGATTGTGCTTTAGCAATAGGTTCTGCGGTGGACCATATAACTAATCTTGTTTCATCAAAAAATAAATGTTCAGGCCCTCTTCGTAGTTTTGGAGGACTTGATCTCGATTTGAATAGAGTTGATGAACCTAATGATGTAGGTCAATGCTCCTTGAGTAGCAGTCATAGATTAGAGGGTGCTGTTTTTCCCGCAAGAGCATCTTCATCCAGTATCTTGCCAACTGCAGAAGTGAGGAGGGACTTTGATTTGAATAATGGGCCTGGTGTTGATGATTCATGTGCAGAACAGCCTCTATTCCACCAGAGTCATCAGGGAAACATGCGCTCCCAACTAAATGCTTCTAGCCTCAGAATGAACAATCCAGAAATGGGAAACTTATCATCTTGGTTTGCTCCAGGGAATAGTTACTCAACGATGACAATTCCATCAATGTTGCCTGATCGGGGGGAGCAGCCACCATTTCCAATAATCCCACCCGGTGCCCCGCGAATGTTAGGTCCATCTGCTGCTGGTTCCCCTTATACTCCAGATGTTTTCAGGGGTTCGGTATTGTCATCATCACCTGCTATGCCTTTTCCCGCTGCCCCATTCCAGTATCCTGTGTTCCCTTTTGGAACTACTTTCCCACTTCCCTCTGGAACATATGCTGTTGGATCAACCTCTTATATTGATTCATCCTCGGGTGGAAGACTTTTCACTCCGCCTATAAATTCACAGTTGCTAGGTGCTGTGGCACCTCAATACCCAAGGCCTTATATGGTTTCCCTTCCCGATGCTAACAGCAATGGAGCCACCGACCACAACAGAAAACGGAGCCGGCAAGGTCTGGATCTGAATGCAGGTCCTGGAGCTGTGGACTTGGAAGGGAAAGAAGAGTCAGTTTCGTTGGTAACGAGGCAACTGGACGAGCATGGGAGGATGTATCCTGTAGCTGGAGGTCTACTGAAGAGGAAGGAACCCGAGGGAGGATGGGACAGTGAGAGTTACAGGTTCAAGCAATCACCGTGGCAGTAGGAATGCAAAAAAACCTGCAACTTGGCGATCTTGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCAAAGGATGGACTATGGTGGGCTCCTCACAAGTATCAGCTTCTAGTATGCTCTTGTGGTTGTGTGATGTGACCAATGATGTGTTCAGTCCCCAACCACTATTTCTCTCAATGTATGAAAGGAAGGAGGATTTCAATGGGTTTGTGAGCACTTTTGTCAACCGTATTGTCTGGGTGGAGACAGATGAGTCTTCCCTCTGTAAATATTTTAACTGTTGGAAGGCTTGAGATCTGCAACACCCGGCAACTGCGGATAAGTTGTCTTATCGTTGGCCAAGATATTGCCAGTGGAGGTTGGATTTCTGGACAGAGTAAAATGGAATGCCTTCTATGTTCTTTGTTGCTAATGATCTTTCTTGCTCCCTACTTTCTTGGCTGTTCTCTCCTCTTTTTTGGCAATTACATAAGTATAAAGAGGTTGACACCAAATTTTGGTACTAAAGTGTCCACCTGCCATGCTTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328474" ref_strand="+" ref_description="SGN-U328474        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:17735578-17735985 FORWARD | Aliases: T17F15.110(evalue: 5e-19, score=91.7) genbank/nr: expressed(evalue: 7e-69, score=263)">
      <seq>ttttttcttcctcctccttctctaatcaccagccaatgcattaacccatatttcaatggcaggttctgaatttcctcacgcatatccacaaacgccaagtatcgatacttccgaaacgctatttcaacgacgtagccgttgtttctgcttcccatctttccgttctccgaatcaattaacaaaatacgttaagtttgactggtggcataggttacgtagcggtgcggttaaggagggatctgtatgggctaaaggaatcaacgctttgaagaagcttcgtgaatggtcggagatcgtcgccggacctagatggaagactttcatccgtcggttccatcggaacaaaagcggtaataggaatgcgaaattccaatacgatcctttgagttactcactgaacttcgatgaaggacgagggaataacggagaagaggaggaggaattggtacttcggaatttctcgacgagatacgcatcgattccggcgtctagtaacttgggcaaagatgggcccagtttcgtttgagttgcaaacgcaagtactatactatttgacagtgattggactggaccgatcgataaatttatattatcgtcaatcataaattagtctcagcgtataatttcgagacaattcaatcccccttacagttcagtagtggggcaaagaaaacaacagctcatcataaaagataagttttctaccaacaaaaaaaatattattgtggttggtcttatttgtctaatgtctttttcgttgtttaatttaatttacttctcttgtctctacttgtttttgtctttatgcactgtaaatacaatatccattttttttgtgtgataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0197N20.1" temp_strand="-" temp_description="C06HBa0197N20.1  AC211062.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0197N20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="91297" stop="89854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90997" g_stop="90155" g_length="843"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="843" r_length="843" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="844" polyA_stop="856"/>
      <MATCH_line gen_id="C06HBa0197N20.1" gen_strand="-" ref_id="SGN-U328474" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0197N20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90997" e_stop="90155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTTCCTCCTCCTTCTCTAATCACCAGCCAATGCATTAACCCATATTTCAATGGCAGGTTCTGAATTTCCTCACGCATATCCACAAACGCCAAGTATCGATACTTCCGAAACGCTATTTCAACGACGTAGCCGTTGTTTCTGCTTCCCATCTTTCCGTTCTCCGAATCAATTAACAAAATACGTTAAGTTTGACTGGTGGCATAGGTTACGTAGCGGTGCGGTTAAGGAGGGATCTGTATGGGCTAAAGGAATCAACGCTTTGAAGAAGCTTCGTGAATGGTCGGAGATCGTCGCCGGACCTAGATGGAAGACTTTCATCCGTCGGTTCCATCGGAACAAAAGCGGTAATAGGAATGCGAAATTCCAATACGATCCTTTGAGTTACTCACTGAACTTCGATGAAGGACGAGGGAATAACGGAGAAGAGGAGGAGGAATTGGTACTTCGGAATTTCTCGACGAGATACGCATCGATTCCGGCGTCTAGTAACTTGGGCAAAGATGGGCCCAGTTTCGTTTGAGTTGCAAACGCAAGTACTATACTATTTGACAGTGATTGGACTGGACCGATCGATAAATTTATATTATCGTCAATCATAAATTAGTCTCAGCGTATAATTTCGAGACAATTCAATCCCCCTTACAGTTCAGTAGTGGGGCAAAGAAAACAACAGCTCATCATAAAAGATAAGTTTTCTACCAACAAAAAAAATATTATTGTGGTTGGTCTTATTTGTCTAATGTCTTTTTCGTTGTTTAATTTAATTTACTTCTCTTGTCTCTACTTGTTTTTGTCTTTATGCACTGTAAATACAATATCCATTTTTTTTGTGTGATA</genome_strand>
        <mrna_strand>TTTTTTCTTCCTCCTCCTTCTCTAATCACCAGCCAATGCATTAACCCATATTTCAATGGCAGGTTCTGAATTTCCTCACGCATATCCACAAACGCCAAGTATCGATACTTCCGAAACGCTATTTCAACGACGTAGCCGTTGTTTCTGCTTCCCATCTTTCCGTTCTCCGAATCAATTAACAAAATACGTTAAGTTTGACTGGTGGCATAGGTTACGTAGCGGTGCGGTTAAGGAGGGATCTGTATGGGCTAAAGGAATCAACGCTTTGAAGAAGCTTCGTGAATGGTCGGAGATCGTCGCCGGACCTAGATGGAAGACTTTCATCCGTCGGTTCCATCGGAACAAAAGCGGTAATAGGAATGCGAAATTCCAATACGATCCTTTGAGTTACTCACTGAACTTCGATGAAGGACGAGGGAATAACGGAGAAGAGGAGGAGGAATTGGTACTTCGGAATTTCTCGACGAGATACGCATCGATTCCGGCGTCTAGTAACTTGGGCAAAGATGGGCCCAGTTTCGTTTGAGTTGCAAACGCAAGTACTATACTATTTGACAGTGATTGGACTGGACCGATCGATAAATTTATATTATCGTCAATCATAAATTAGTCTCAGCGTATAATTTCGAGACAATTCAATCCCCCTTACAGTTCAGTAGTGGGGCAAAGAAAACAACAGCTCATCATAAAAGATAAGTTTTCTACCAACAAAAAAAATATTATTGTGGTTGGTCTTATTTGTCTAATGTCTTTTTCGTTGTTTAATTTAATTTACTTCTCTTGTCTCTACTTGTTTTTGTCTTTATGCACTGTAAATACAATATCCATTTTTTTTGTGTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327480" ref_strand="+" ref_description="SGN-U327480        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|50924898|ref|XP_472793.1| OSJNBb0048E02.14 [Oryza sativa (japonica cultivar-group)] >gi|21741227|emb|CAD40938.1| OSJNBb0048E02.14 [Oryza sativa (japonica cultivar-group)] (evalue: 3e-79, score=298)">
      <seq>tttcaactaacgatcaaatttttttttgctttgtagagattgtttcactgtatatgcacaggtattgcggcggaattctgaaaataaacagagatgccagggccgggaccgcatatgatgtatacattgggttcaggattaggattgatgagtgtatctaatggccggtttagtcctcatcactgcgttacctattccatcaacgctttctttggaccggacattggatctttctctgagtggcttacatcaacccttgggttaggaagtgctttgggttatgcaattgagccctggatccatgaccccttttatcatatacttattcttggtatccccatgtccatgctttacagcgctctctccaaatttctcctaaagaagggattgctcgattccatttcaggggttccgcttacaaggaaacagtgtcttttcctggtggctgctggctctttgtcacattttttcttggaccatttgtttgaggaaaatgggaagtctactatgtacacttggatattgagcacaggttggtgggaagggcgcgcaccaatcaatctcgatgctgttgttgtggtttgcattctatgtagctgcttgattgctgactttatatacataaacagagtgaagccgctcaaactgctcaaactacgagttatcaactctgtcaaactgatcttggtaattgcttccttatactgtttatggtgtgcaacccaaatatacttggttcaacctcgtcggccagcagttggtgaagaggctgatcttggagttcttgtgtttatgacaatatattttttcctccctcattggctatgcattcagtccatgaactcaagagatccccaagatcttttgcccttatgactacatgaaatgcatagtgactagtgacataaaaaatctcaaggctataattgattgaacccaagtccagcaacattttgtagaggagctgaactagtcaattttcgccgttccattgcagcatatgttgctctttaaagttcctggtatcatctaagcatagatttaccttgctttcctggctccacaaagtgtagagagagtgattttggagctgcatcctttcttcctggggatgataagttaactgtatggtatcgaaaaaacgttgacgttataaggttttgttgataaaaaataacttatgctagctcatattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0197N20.1" temp_strand="+" temp_description="C06HBa0197N20.1  AC211062.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0197N20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="91390" stop="95119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91690" g_stop="92097" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92098" i_stop="92671" i_length="574">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92672" g_stop="92752" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="489" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92753" i_stop="94024" i_length="1272">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94025" g_stop="94164" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="629" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94165" i_stop="94251" i_length="87">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94252" g_stop="94819" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="1197" r_length="568" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0197N20.1" gen_strand="+" ref_id="SGN-U327480" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1197</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0197N20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91690" e_stop="92097"/>
          <exon e_start="92672" e_stop="92752"/>
          <exon e_start="94025" e_stop="94164"/>
          <exon e_start="94252" e_stop="94819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAACGAACGATCAAATTTTTTTTTGCTTTGTAGAGATTGTTTCACTGTATATGCACAGGTATTGCGGCGGAATTCTGAAAATAAACAGAGATGCCAGGGCCGGGACCGCATATGATGTATACATTGGGTTCAGGATTAGGATTGATGAGTGTATCTAATGGCCGGTTTAGTCCTCATCACTGCGTTACCTATTCCATCAACGCTTTCTTTGGACCGGACATTGGATCTTTCTCTGAGTGGCTTACATCAACCCTTGGGTTAGGAAGTGCTTTGGGTTATGCAATTGAGCCCTGGATCCATGACCCCTTTTATCATATACTTATTCTTGGTATCCCCATGTCCATGCTTTACAGCGCTCTCTCCAAATTTCTCCTAAAGAAGGGATTGCTCGATTCCATTTCAGGGGTTAGCCTCCTTAGCTTTTCTTGATAGAATTTTGTGTGGGGGAATTGATGGAATTGTGAATTTTGAGAAAGCTACTGTTTTTAGGACATGGGTGATTCTGTTTCGTTTAATTTCGTAGCTGAATTGTGTTTTTTAGTCTTGATTCCGTTCGTTTCTGGGGTCAGCCCCTAATCTGCCAACTTCTCTATATGTTTGTTTTACTAACGATTTCGTCTGTGTAAATTGTTTGCGTTGTGAATTTTGATTGCTATTGGGGTGTACCCTTGGAGAAAAACTACTGTTTCTAGGAGGACATGGCTAACTCTGTTTTGTTCATTTTTGTTGTTCCCCTTCCTTTGCTGATTCTGTTCCGTTTCTGGGGTTAGCCCCTAATCTCCCAGCTTCTCTATATGTTTGTTTTACTAACAAATTTGGTTCAATTTTGTGTGAGGGAATTGATTGAATAGTGAATTTTGATTGTATTGGCATGTCCCCTTTGAGAAAAGCTACTGGCTTTAGGAGGACATGGCTGACTCTGTTTCGTTCGTTTTTGCTGTTCCGTTTCGTACCTGATTGTGTTTTACTATGCAAACAGGTTCCGCTTACAAGGAAACAGTGTCTTTTCCTGGTGGCTGCTGGCTCTTTGTCACATTTTTTCTTGGACCATTTGTTTGAGGTAATGTCTGATCATATATGGAGTCATGTTTCTTGTGAGCTACATTTTGCTCTGGCCTTCTTATGAAATCTCTGTGCAATTTCTGAGAAAATGGTAGCCATTAGTGTTATTGAATGGCAGTGTAGTATACTAGTATAGAACTGCAAACAAGGTTTAGCACCAGTAGCATCCTTAATGTGCCTGCGAAAATTTTTCACTGATCCTCGTTTATTGCGAAAGCTATCAAAGCCATGCTAGTTCCATAGAGAATTTTTTTTTCTTTTTTTTTTCTTCTTTTTGTTTGATCAGTCGAATTTACTGAACCTGATGGCCCAAGGAGATTGTGAAGAGGCCTGACAATAGTATATTTGTTGATCATTGAATAGTTTGCTACACACAAGAATTTGTATGATATTTGTGCAAATGCTTGATAGCATGTCTTTATTCTTTATACTGGCTTGAATTTGGTTCTTGAACTGGTTAATAATTTTGTTGGTCGAGGAGAAGCTTTGTAAGTCCACATTGTATAAATACTCTTTTGTTATTAAGAAAAAAGAGTAGACCTATCAGTCTCTAGTTCTAACAAATTGCGTCTCTGAAGAGAATTTTGCCGTAGCAAAGATAGTTTTGGAGATGTAGTTATATAAGTATCTTCCCTTGTCAAAAATATACTTTGAGATTAATCAGCTTTTCAAAATTAGCTTCTACAAGTTAATTACTTTGGTTATGGAGAATTGGAGGAACATAAATGAGTCACATCTGTAAACTTTCAGGCATAGAATGAGTTTAACAGGGACCATGAAGGGGTTGCTTCCCTGTCCACCAGCACGAAGGAAACTTACACAATTATACATTAAGAAATTAAATAAGTTCCAATTATCTTTCGAAGACGCATCCCTTTCTTGTAAGAGAGAAGGTTTTAGTGTGTCCTGTCAAGGCAGTAGGTTAATCCTTGAGTAAAGTTATTGAAAAAACTCCAAAGGCCTGAAGAAGGAAGGTGGCAATTAGACGTTGTTTGTAGTATAGTAGACAAAGGAGGAGACTTTATTACTATTAGACGTTGTTTGTAGTTCATATGCCTTAATCCTTATCCCTTTAATCTCTCAAGAAATGTCTATGTTGATCTCAGAATCACCTGGTTTTACTAAGACAAGATTGGAGACCACATATCAAATGCTTTTATCTTTATAAGTCATAAATGCAGAATAAAAAATTTACTTAACAACAAAATGCATCTTTTCTTTGAGATCAGCGATAGTCCTTTCTATAAGTTCCTTGTTCCTCTTGTAACAGGAAAATGGGAAGTCTACTATGTACACTTGGATATTGAGCACAGGTTGGTGGGAAGGGCGCGCACCAATCAATCTCGATGCTGTTGTTGTGGTTTGCATTCTATGTAGCTGCTTGATTGCTGACTTTATATACATAAACAGGTGTTTGCTGATGGATTATTCAATGAGATTTTCAGCTGCTTTCTCTGTCGTTAACATGTCTTATTTTTTGTCGTAATCCTCTTGCAGAGTGAAGCCGCTCAAACTGCTCAAACTACGAGTTATCAACTCTGTCAAACTGATCTTGGTAATTGCTTCCTTATACTGTTTATGGTGTGCAACCCAAATATACTTGGTTCAACCTCGTCGGCCAGCAGTTGGTGAAGAGGCTGATCTTGGAGTTCTTGTGTTTATGACAATATATTTTTTCCTCCCTCATTGGCTATGCATTCAGTCCATGAACTCAAGAGATCCCCAAGATCTTTTGCCCTTATGACTACATGAAATGCATAGTGACTAGTGACATAAAAAATCTCAAGGCTATAATTGATTGAACCCAAGTCCAGCAACATTTTGTAGAGGAGCTGAACTAGTCAATTTTCGCCGTTCCATTGCAGCATATGTTGCTCTTTAAGGTTCCTGGTATCATCTAGGCATAGATTTACCTTGCTTTCCTGGCTCCACAAAGTGTAGAGAGAGTGATTTTGGAGCTGCATCCTTTCTTCCTGGGGATGATAAGTTAACTGTATGGTATCGAAAAAACGTTGACGTTATAAGGTTTTGTTGATAAAAAATAACTTATGCTAGCTCATATTTA</genome_strand>
        <mrna_strand>TTTCAACTAACGATCAAATTTTTTTTTGCTTTGTAGAGATTGTTTCACTGTATATGCACAGGTATTGCGGCGGAATTCTGAAAATAAACAGAGATGCCAGGGCCGGGACCGCATATGATGTATACATTGGGTTCAGGATTAGGATTGATGAGTGTATCTAATGGCCGGTTTAGTCCTCATCACTGCGTTACCTATTCCATCAACGCTTTCTTTGGACCGGACATTGGATCTTTCTCTGAGTGGCTTACATCAACCCTTGGGTTAGGAAGTGCTTTGGGTTATGCAATTGAGCCCTGGATCCATGACCCCTTTTATCATATACTTATTCTTGGTATCCCCATGTCCATGCTTTACAGCGCTCTCTCCAAATTTCTCCTAAAGAAGGGATTGCTCGATTCCATTTCAGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGCTTACAAGGAAACAGTGTCTTTTCCTGGTGGCTGCTGGCTCTTTGTCACATTTTTTCTTGGACCATTTGTTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGGGAAGTCTACTATGTACACTTGGATATTGAGCACAGGTTGGTGGGAAGGGCGCGCACCAATCAATCTCGATGCTGTTGTTGTGGTTTGCATTCTATGTAGCTGCTTGATTGCTGACTTTATATACATAAACAG.......................................................................................AGTGAAGCCGCTCAAACTGCTCAAACTACGAGTTATCAACTCTGTCAAACTGATCTTGGTAATTGCTTCCTTATACTGTTTATGGTGTGCAACCCAAATATACTTGGTTCAACCTCGTCGGCCAGCAGTTGGTGAAGAGGCTGATCTTGGAGTTCTTGTGTTTATGACAATATATTTTTTCCTCCCTCATTGGCTATGCATTCAGTCCATGAACTCAAGAGATCCCCAAGATCTTTTGCCCTTATGACTACATGAAATGCATAGTGACTAGTGACATAAAAAATCTCAAGGCTATAATTGATTGAACCCAAGTCCAGCAACATTTTGTAGAGGAGCTGAACTAGTCAATTTTCGCCGTTCCATTGCAGCATATGTTGCTCTTTAAAGTTCCTGGTATCATCTAAGCATAGATTTACCTTGCTTTCCTGGCTCCACAAAGTGTAGAGAGAGTGATTTTGGAGCTGCATCCTTTCTTCCTGGGGATGATAAGTTAACTGTATGGTATCGAAAAAACGTTGACGTTATAAGGTTTTGTTGATAAAAAATAACTTATGCTAGCTCATATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342803" ref_strand="+" ref_description="SGN-U342803        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|37050895|emb|CAE47556.1| deleted in split hand/splt foot protein 1 [Lycopersicon esculentum](evalue: 1e-05, score=54.3)">
      <seq>ttacctttcctatagttttgtaatttaggaccctctaaatttagaaagtaacttccatggatagggtaagtgcttgttatatgagaaaaagttgttatgtgtttattttctttagacaaataattgtccgctcaaaatacaaagtagaatcgaaagaaattaaatttatgatttctattatataaatataataattgagataatagagaagcaaaaataacaaaacgaaaagcaccaaagaaaaaattcagatcggtttaaatagttgcccccattcccaagaaaacctcgtgagtttaaatataaagtttccttccagagcccagaaaaattagccatccgttaatcgtccatttttgcagcagacttaaatcataatggcaaccgaacaaccaaaaccagcaactgtagatgtgaaaatggatctgtttgaggacgatgacgaatttgaagagtttgacattgatcaagagtgggagtcgaaaaaggaagggaaagaagctacccagcagtgggaagatgattgggatgatgatgatgtcaatgatgatttctctttacaactganaagggaactggaaagcaacacggagaagaaataaccaaaccttcacaggattgtttctctttctcaagatttaaccacagatatctgtttgcgttcatatatttcccattatgtagcactctttgtttcaccaaacgcgatgaacgtcagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0197N20.1" temp_strand="+" temp_description="C06HBa0197N20.1  AC211062.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0197N20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95684" stop="98558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95984" g_stop="96351" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96352" i_stop="96517" i_length="166">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96518" g_stop="96620" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="471" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96621" i_stop="98008" i_length="1388">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98009" g_stop="98258" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="721" r_length="250" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0197N20.1" gen_strand="+" ref_id="SGN-U342803" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0197N20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95984" e_stop="96351"/>
          <exon e_start="96518" e_stop="96620"/>
          <exon e_start="98009" e_stop="98258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCTTTCCTATAGTTTTGTAATTTAGGAATTTCTGATTTTAGAAAGTAACTTCCATGGATAGGGTAAGTGCTTGTTATATGAGAAAAAGTTGTTATGTGTTTATTTTCTTTAGACAAATAATTGTCCGCTCAAAATACAAAGTAGAATCGAAAGAAATTAAATTTATGATTTCTATTATATAAATATAATAATTGAGATAATAGAGAAGCAAAAATAACAAAACGAAAAGCACCAAAGAAAAAATTCAGATCGGTTTAAATAGTTGCCCCCATTCCCAAGAAAACCTCGTGAGTTTAAATATAAAGTTTCCTTCCAGAGCCCAGAAAAATTAGCCATCCGTTAATCGTCCATTTTTGCAGCAGACTGTAAGTTCGATTATTCATTTTTCTCTTTGATTTTCAATTTTTACTTTGAAGGATATGCATTTCTTTTCTGTTTTCACTTGATAGCAGCTTAGCATCTGGATTTTCCTTTACTTTTTTCCGATCTCAAAGTTATTTGTTGATGGTGTAAATTTGTCCTCTATGTTAGTAAATCATAATGGCAACCGAACAACCAAAACCAGCAACTGTAGATGTGAAAATGGATCTGTTTGAGGACGATGACGAATTTGAAGAGTTTGACATTGATCAAGGTGAGTTAACATTCATTAATTTTAGTTTTTATTTTTATTTTTCTCGTGATGATTATCTTTGCCTTGGAATTTGAGATTTAGCATCGTTTTTTGTTTTTTTTGAGTGTTAATGGAATCATTATACTTTTATATATAAGGTTTATCTAACTGTGCAAACTCTGCCTATGTGAGTTTTGCGAATAATAGTTGATAGTAAATCCGTTTTGAGGAGGATTGATTCAGTAAGTTGGCATCGAACTTTGAAGTAGTCAAACTATGATGAGTACTTTGAATATTGAGTAGAGCTGATTAGATGAAGAGAATTCATTTGACTAAACTCTTAACTAGTTTGAAATCGACTATTTTTGGTTGATAACTGTGCAAATTCTGTTTGTTTGTGATAAAGTCCTGTTCAAAAGGAGTTTTGCATGAATGCTGTGTTGCACCTCTGGTTGCAATACTTTGAATTTCGGCATTGCTGATTCTAAAAATTAAGAGATTCTTGCTAAATGAAATGAATAAACAACATACCTGTTATACCGTGTCACTTCAGAAGAATTTTGAGTTTGTTTTGTGGGTAGTTTGTTCCTTTTGTTTGCTTGCAAAGTGATTTTGTTCCTGTTGGTCTTGAGCGTCATTGTTTAGTTGATTCAAGCTGCCTCACAGCCGAAAATTGGGACAACACCCAGTCATATCAAATTAATAGGAAATTTGCTTGTTTTATTTCTCTTGACACTATTAAGGGGTGGAGGTGAGTAAGTAGTTGTGTGTATTGCCTAGTTATTTAATATGGAGATGAATGGTGCACCAATAATAGCCGTCTGTTCTTGTTTAGTTTTCTAATAGGGCTCTTGGAGATGGTAAGTTTATTTTCAAACCTCTCAGTTCAAGATGCACAGGAAGACCAAACTCTTGGAGATTGACAATTTTGCAATTAATAGTTCACTCATGCTTATACATATCTTAACTGCTTGATCTCCCCATCTTCAGTCATGCAAGCACTAGTCCCTAGGGCTTCGGTCTAGTGGTAAAAGTGCAACATGTGATATGTGAGTTAGGAGAACAGCATGGTTTTGAACCCAGTACTTGGTGCTAAGTTAGAAAGGGTAAAGGGGTGGTCCCATTAGCCATCAAGGTTTTATTGTGCACCACTGCCCTCCAGAGATTTCTTAGTTATTAAAAAAACTTCAGTCATGCAAGCACTAGATAGGTATTCCTCTAACTTATCAAATGTTAATCCATTGTGTCTGATTTTGGTACTTGGTTCCAAGTGAAGTTGGTACTGATTTTTTGCATCTATCTTCTCAATTTGGAGAAGTGTTAATCATCGTAGTTTGAGACTCTATGACCGCTTTGCCTTTCTGATTAATTTGTCACTTTGCCTCCTCGTTAACATGTGCTGTTTTCAGAGTGGGAGTCGAAAAAGGAAGGGAAAGAAGCTACCCAGCAGTGGGAAGATGATTGGGATGATGATGATGTCAATGATGATTTCTCTTTACAACTGAAAAGGGAACTGGAAAGCAACACGGAGAAGAAATAACCAAACCTTCACAGGATTGTTTCTCTTTCTCAAGATTTAACCACAGATATCTGTTTGCGTTCATATATTTCCCATTATGTAGCACTCTTTGTTTCACCAAACGCGATGAACGTCAGTTT</genome_strand>
        <mrna_strand>TTACCTTTCCTATAGTTTTGTAATTTAGGACCCTCTAAATTTAGAAAGTAACTTCCATGGATAGGGTAAGTGCTTGTTATATGAGAAAAAGTTGTTATGTGTTTATTTTCTTTAGACAAATAATTGTCCGCTCAAAATACAAAGTAGAATCGAAAGAAATTAAATTTATGATTTCTATTATATAAATATAATAATTGAGATAATAGAGAAGCAAAAATAACAAAACGAAAAGCACCAAAGAAAAAATTCAGATCGGTTTAAATAGTTGCCCCCATTCCCAAGAAAACCTCGTGAGTTTAAATATAAAGTTTCCTTCCAGAGCCCAGAAAAATTAGCCATCCGTTAATCGTCCATTTTTGCAGCAGACT......................................................................................................................................................................TAAATCATAATGGCAACCGAACAACCAAAACCAGCAACTGTAGATGTGAAAATGGATCTGTTTGAGGACGATGACGAATTTGAAGAGTTTGACATTGATCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGGAGTCGAAAAAGGAAGGGAAAGAAGCTACCCAGCAGTGGGAAGATGATTGGGATGATGATGATGTCAATGATGATTTCTCTTTACAACTGANAAGGGAACTGGAAAGCAACACGGAGAAGAAATAACCAAACCTTCACAGGATTGTTTCTCTTTCTCAAGATTTAACCACAGATATCTGTTTGCGTTCATATATTTCCCATTATGTAGCACTCTTTGTTTCACCAAACGCGATGAACGTCAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313643" ref_strand="+" ref_description="SGN-U313643        Tomato 200607 #1 [15 ESTs aligned] arabidopsis/peptide: | Symbol: None | nodulin MtN3 family protein, contains Pfam PF03083 MtN3/saliva family; similar to LIM7 GI:431154 (induced in meiotic prophase in lily microsporocytes) from (Lilium longiflorum) | chr3:10409336-10410956 REVERSE | Aliases: None(evalue: 2e-53, score=194) genbank/nr: gi|37050896|emb|CAE47557.1| seven-transmembrane-domain protein 1 [Lycopersicon esculentum](evalue: 6e-97, score=327)">
      <seq>ctaaaaccaaaaaaagaaaaaaaaaacaataaaacaataacagcctccatgcaaatttgcaattttcaataatcaataatacttgccatctcctagcaataaaatttgtaattctagcatcgtataaagttacaaaaatttaaagatggcagatacagacaccattaggacagttgtaggaatcattggtaatgtcatatctttcttcctcttcttgtccccaggtttgggtgttttatggcatgccatttgttcaccctgacagtcttcttgtcatcaccattaacggatttggtcttgctattgagttactctacgtctcaatcttcttcatctactccgattggtctaagcgacaaaagatcataattgctttgattattgaagcaatcttcatggcaatcctcatctttgttacattaacattcctccatggaaccaaggatagatcgatgcttattgggattgtggctatagtcttcaatatcatcatgtacacctcaccactgaccgtcatgaagaaggtgatcaccaccaagagtgtgaaatacatgccattttacttgtcactagcaaactttgctaatggcattgtttgggcatgctatgcactcctcaaatttgatccttatatcctgatccccaatggattgggttcattgtctggattagtgcagttgatcctctttgcaacattttaccgcacaacaaattgggatgaggatgaaaaagaagttgaactaagtacttccaaatccaacaagtcagatgtctgataaacaaaaattgcagagatgaaactcccacactgttttccaagtgtgtgtatacacataaggtgtgataaagagagaaaaagaaaaagtctaccattttaacagtatactcttgatgtatttaccctacattttcactttatttctttaaagcaaatcagttaatatatgtatgagatctcctattgtagacatctttttcatatggcaagagttgatcatctcacctgactcgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0197N20.1" temp_strand="+" temp_description="C06HBa0197N20.1  AC211062.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0197N20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98348" stop="100426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98564" g_stop="98580" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.647"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98581" i_stop="98652" i_length="72">
            <donor d_prob="0.952" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98653" g_stop="98850" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="225" r_length="209" r_score="0.848"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98851" i_stop="99041" i_length="191">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.099" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99042" g_stop="99172" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="356" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99173" i_stop="99266" i_length="94">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.577" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99267" g_stop="99428" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="518" r_length="162" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99429" i_stop="99522" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99523" g_stop="99642" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="638" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99643" i_stop="99748" i_length="106">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99749" g_stop="100130" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="1019" r_length="381" r_score="0.963"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="100131" i_stop="100368" i_length="238">
            <donor d_prob="0.555" d_score="0.84"/>
            <acceptor a_prob="0.960" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="100369" g_stop="100373" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1020" r_stop="1024" r_length="5" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0197N20.1" gen_strand="+" ref_id="SGN-U313643" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>1015</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0197N20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98564" e_stop="98580"/>
          <exon e_start="98653" e_stop="98850"/>
          <exon e_start="99042" e_stop="99172"/>
          <exon e_start="99267" e_stop="99428"/>
          <exon e_start="99523" e_stop="99642"/>
          <exon e_start="99749" e_stop="100130"/>
          <exon e_start="100369" e_stop="100373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACCTCTTAACAAAGGCCTATAAAAGTAGAATTAGCTGAAACATTTTGTAAATATTGTTGCTGTTTGGATGCGTGGCTGCCTAAAACCAAAAAAAAACAATAAAACAATAACAGCCTCCATGCAAA-TCGCAATTTTCAATAATTAATAATACTTGCCATCTCCTAGCAATAAAATTCGTAATTCTA--A-AGT-TAAA------AAAATTTAAAGATGGCAGATCCAGACACCACTAGGACGGTTGTAGGAATCATTGGTAATGTCATATCTTTCTTCCTCTTCTTGTCCCCAGGGTAAGTTTCATCTCTAATCTCTTCTTCGCGATCGATTAATTTAATTCTCTCCTTACTCAAGGCTCAAAAAAATAAAAAATTATCGCTATTTATGATGTTTCGCAGGCCAACATTTGTCCAGATTTTGAAAGCAAAGTCAGTGATGGAATTCAAGCCAGATCCTTATATAGCAACAGTTTTGAATTGTGCAGTTTGGGTGTTTTATGGCATGCCATTTGTTCACCCTGACAGTCTTCTTGTCATCACCATTAACGGATTTGGTCTTGCTATTGAGTTACTCTACGTCTCAATCTTCTTCATCTACTCCGATTGGTCTAAGCGAGTATGTACATTACTGTCTATGTAAAAATTACTTCTTTTTTTTTTCTTCTAAACATATAGAATTTAACACATTGCTACAACGTACCTGCCTGCAGCAAAAGATCATAATTGCTTTGGTTATTGAAGCAATCTTCATGGCAATCCTCATCTTTGTTACATTAACATTCCTCCATGGAACCAAGGATAGATCAATGCTTATCGGGATTGTGGCTATAGTCTTCAATATCATCATGTACACCTCACCACTGACCGTCATGGTAAGTTACATTTATCAATTCAGTCAGATCTTTCTATAACAACGTCAAAAGCAACCCCCACATGCACTAATATAATCTCTTTCGTATTGAGCAGAAGAAGGTGATCACCACCAAGAGTGTAAAATACATGCCATTTTACTTGTCACTAGCAAACTTTGCTAATGGCATTGTTTGGGCATGCTATGCACTCCTCAAATTTGATCCTTATATCCTGGTACGTGGTGTAGTTTATTACTCGTTCCGTCCTAATTTATGTGAAAATGTTAGTCACTAACAATGTCTTTTTTTGTGTGTGTGTGTGTGTGATTATAATAAAACAGATCCCCAATGGATTGGGTTCATTGTCTGGATTAGTGCAGTTGATCCTCTTTGCAGCATTTTACCGCACAACAAATTGGGATGAGGATGAGAAAGAAGTTGAACTAAGTACTTCCAAATCCAACAAGTCAGATGTCTGATAAACAAAAATTGCAGAGATGAAACTCCCACACTGTTTTCCAAGTGTGTGTATACACATATGGTGTGATAAAGAGAGAAAAAGATAAAAGTCTACCATTTTAACAGTATACTCTTGATGTATTTACCCTGCATTTTCACTTTATTTCTTTAAAGCAAATCAGTTAATATATGTATGAGATCTCCAATTGTAGACATCTTTTTCATATGGCAAGAGTTGATCATCTCACCTGACTTCTATATCTCGTTATCTATAAATTTCCTTTCTTATCGTTGTTAAGTGAACATATACGTAATTGAGTTGGTGTACTAGTAAGGAAGAGTTGTGTACTGAGCTTATTATCGAATGTCATTCCAAATAGAAGTAAAAGAACCAACAGATATAAGATGGACTAATATTTGGTTGCATCACTTGAAATGTTACAAGAAGCTGCAAATTCCCTCATTTTGTTTTGACTATTATCCTTGTGTAAATCATACATAGGAGAA</genome_strand>
        <mrna_strand>CTAAAACCAAAA-AAAG........................................................................AAAAAAAAAACAATAAAACAATAACAGCCTCCATGCAAATTTGCAATTTTCAATAATCAATAATACTTGCCATCTCCTAGCAATAAAATTTGTAATTCTAGCATCGTATAAAGTTACAAAAATTTAAAGATGGCAGATACAGACACCATTAGGACAGTTGTAGGAATCATTGGTAATGTCATATCTTTCTTCCTCTTCTTGTCCCCAGG...............................................................................................................................................................................................TTTGGGTGTTTTATGGCATGCCATTTGTTCACCCTGACAGTCTTCTTGTCATCACCATTAACGGATTTGGTCTTGCTATTGAGTTACTCTACGTCTCAATCTTCTTCATCTACTCCGATTGGTCTAAGCGA..............................................................................................CAAAAGATCATAATTGCTTTGATTATTGAAGCAATCTTCATGGCAATCCTCATCTTTGTTACATTAACATTCCTCCATGGAACCAAGGATAGATCGATGCTTATTGGGATTGTGGCTATAGTCTTCAATATCATCATGTACACCTCACCACTGACCGTCATG..............................................................................................AAGAAGGTGATCACCACCAAGAGTGTGAAATACATGCCATTTTACTTGTCACTAGCAAACTTTGCTAATGGCATTGTTTGGGCATGCTATGCACTCCTCAAATTTGATCCTTATATCCTG..........................................................................................................ATCCCCAATGGATTGGGTTCATTGTCTGGATTAGTGCAGTTGATCCTCTTTGCAACATTTTACCGCACAACAAATTGGGATGAGGATGAAAAAGAAGTTGAACTAAGTACTTCCAAATCCAACAAGTCAGATGTCTGATAAACAAAAATTGCAGAGATGAAACTCCCACACTGTTTTCCAAGTGTGTGTATACACATAAGGTGTGATAAAGAGAGAAAAAGA-AAAAGTCTACCATTTTAACAGTATACTCTTGATGTATTTACCCTACATTTTCACTTTATTTCTTTAAAGCAAATCAGTTAATATATGTATGAGATCTCCTATTGTAGACATCTTTTTCATATGGCAAGAGTTGATCATCTCACCTGACTCGAAAAAAAA..............................................................................................................................................................................................................................................AAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313646" ref_strand="+" ref_description="SGN-U313646        Tomato 200607 #1 [39 ESTs aligned] arabidopsis/peptide: | Symbol: None | nodulin MtN3 family protein, contains Pfam PF03083 MtN3/saliva family; similar to LIM7 GI:431154 (induced in meiotic prophase in lily microsporocytes) from (Lilium longiflorum) | chr3:10409336-10410956 REVERSE | Aliases: None(evalue: 1e-57, score=219) genbank/nr: gi|37050896|emb|CAE47557.1| seven-transmembrane-domain protein 1 [Lycopersicon esculentum](evalue: 1e-93, score=345)">
      <seq>atgcatggctgcctaaaaccaaaaaaagaaaaaaaaaacaataaaacaataacagcctccatgcaaatttgcaattttcaataatcaataatacttgccatctcctagcaataaaatttgtaattctagcatcgtataaagttacaaaaatttaaagatggcagatacagacaccattaggacagttgtaggaatcattggtaatgtcatatctttcttcctcttcttgtccccagggccaacatttgtaaaaattttgaaagcaaagtcagtgatggaattcaagccagatccttatatagcaacagttttgaattgtgcagtttgggtgttttatggcatgccatttgttcaccctgacagtcttcttgtcatcaccattaacggatttggtcttgctattgagttactctacgtctcaatcttcttcatctactccgattggtctaagcgacaaaagatcataattgctttgattattgaagcaatcttcatggcaatcctcatctttgttacattaacattcctccatggaaccaaggatagatcgatgcttattgggattgtggctatagtcttcaatatcatcatgtacacctcaccactgaccgtcatgaagaaggtgatcaccaccaagagtgtgaaatacatgccattttacttgtcactagcaaactttgctaatggcattgtttgggcatgctatgcactcctcnaatttgatccttatatcctgatcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0197N20.1" temp_strand="+" temp_description="C06HBa0197N20.1  AC211062.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0197N20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98348" stop="99946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98626" g_stop="98850" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.800"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98851" i_stop="98955" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98956" g_stop="99172" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="454" r_length="217" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99173" i_stop="99266" i_length="94">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.577" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99267" g_stop="99428" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="616" r_length="162" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99429" i_stop="99522" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99523" g_stop="99642" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="736" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99643" i_stop="99748" i_length="106">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99749" g_stop="99754" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="742" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0197N20.1" gen_strand="+" ref_id="SGN-U313646" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0197N20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98626" e_stop="98850"/>
          <exon e_start="98956" e_stop="99172"/>
          <exon e_start="99267" e_stop="99428"/>
          <exon e_start="99523" e_stop="99642"/>
          <exon e_start="99749" e_stop="99754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTGGATGCGTGGCTGC-CTAAAACCAAAAAAAAACAATAAAACAATAACAGCCTCCATGCAAA-TCGCAATTTTCAATAATTAATAATACTTGCCATCTCCTAGCAATAAAATTCGTAATTCTA--A-AGT-TAAA------AAAATTTAAAGATGGCAGATCCAGACACCACTAGGACGGTTGTAGGAATCATTGGTAATGTCATATCTTTCTTCCTCTTCTTGTCCCCAGGGTAAGTTTCATCTCTAATCTCTTCTTCGCGATCGATTAATTTAATTCTCTCCTTACTCAAGGCTCAAAAAAATAAAAAATTATCGCTATTTATGATGTTTCGCAGGCCAACATTTGTCCAGATTTTGAAAGCAAAGTCAGTGATGGAATTCAAGCCAGATCCTTATATAGCAACAGTTTTGAATTGTGCAGTTTGGGTGTTTTATGGCATGCCATTTGTTCACCCTGACAGTCTTCTTGTCATCACCATTAACGGATTTGGTCTTGCTATTGAGTTACTCTACGTCTCAATCTTCTTCATCTACTCCGATTGGTCTAAGCGAGTATGTACATTACTGTCTATGTAAAAATTACTTCTTTTTTTTTTCTTCTAAACATATAGAATTTAACACATTGCTACAACGTACCTGCCTGCAGCAAAAGATCATAATTGCTTTGGTTATTGAAGCAATCTTCATGGCAATCCTCATCTTTGTTACATTAACATTCCTCCATGGAACCAAGGATAGATCAATGCTTATCGGGATTGTGGCTATAGTCTTCAATATCATCATGTACACCTCACCACTGACCGTCATGGTAAGTTACATTTATCAATTCAGTCAGATCTTTCTATAACAACGTCAAAAGCAACCCCCACATGCACTAATATAATCTCTTTCGTATTGAGCAGAAGAAGGTGATCACCACCAAGAGTGTAAAATACATGCCATTTTACTTGTCACTAGCAAACTTTGCTAATGGCATTGTTTGGGCATGCTATGCACTCCTCAAATTTGATCCTTATATCCTGGTACGTGGTGTAGTTTATTACTCGTTCCGTCCTAATTTATGTGAAAATGTTAGTCACTAACAATGTCTTTTTTTGTGTGTGTGTGTGTGTGATTATAATAAAACAGATCCCC</genome_strand>
        <mrna_strand>ATGCATGGCTGCCTAAAACCAAAAAAAGAAAAAAAAAACAATAAAACAATAACAGCCTCCATGCAAATTTGCAATTTTCAATAATCAATAATACTTGCCATCTCCTAGCAATAAAATTTGTAATTCTAGCATCGTATAAAGTTACAAAAATTTAAAGATGGCAGATACAGACACCATTAGGACAGTTGTAGGAATCATTGGTAATGTCATATCTTTCTTCCTCTTCTTGTCCCCAGG.........................................................................................................GCCAACATTTGTAAAAATTTTGAAAGCAAAGTCAGTGATGGAATTCAAGCCAGATCCTTATATAGCAACAGTTTTGAATTGTGCAGTTTGGGTGTTTTATGGCATGCCATTTGTTCACCCTGACAGTCTTCTTGTCATCACCATTAACGGATTTGGTCTTGCTATTGAGTTACTCTACGTCTCAATCTTCTTCATCTACTCCGATTGGTCTAAGCGA..............................................................................................CAAAAGATCATAATTGCTTTGATTATTGAAGCAATCTTCATGGCAATCCTCATCTTTGTTACATTAACATTCCTCCATGGAACCAAGGATAGATCGATGCTTATTGGGATTGTGGCTATAGTCTTCAATATCATCATGTACACCTCACCACTGACCGTCATG..............................................................................................AAGAAGGTGATCACCACCAAGAGTGTGAAATACATGCCATTTTACTTGTCACTAGCAAACTTTGCTAATGGCATTGTTTGGGCATGCTATGCACTCCTCNAATTTGATCCTTATATCCTG..........................................................................................................ATCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313645" ref_strand="+" ref_description="SGN-U313645        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: | Symbol: None | nodulin MtN3 family protein, contains Pfam PF03083 MtN3/saliva family; similar to LIM7 GI:431154 (induced in meiotic prophase in lily microsporocytes) from (Lilium longiflorum) | chr3:10409336-10410956 REVERSE | Aliases: None(evalue: 3e-53, score=192) genbank/nr: gi|37050896|emb|CAE47557.1| seven-transmembrane-domain protein 1 [Lycopersicon esculentum](evalue: 1e-87, score=296)">
      <seq>ctgcctaaaaccaaaaaaagaaaaaaaaaacaataaaacaataacagcctccatgcaaatttgcaattttcaataatcaataatacttgccatctcctagcaataaaatttgtaattctagcatcgtataaagttacaaaaatttaaagatggcagatacagacaccattaggacagttgtaggaatcattggtaatgtcatatctttcttcctcttcttgtccccagggtaagttcatctctaatctcttcacgatcgactaatctaattctctccttactcaaggctcaaaaaaaaacatcgctatttatgatgtttcgcaggccaacatttgtaaaaattttgaaagcaaagtcagtgatggaattcaagccagatccttatatagcaacagttttgaattgtgcagtttgggtgttttatggcatgccatttgttcaccctgacagtcttcttgtcatcaccattaacggatttggtcttgctattgagttactctacgtctcaatcttcttcatctactccgattggtctaagcgacaaaagatcataattgctttgattattgaagcaatcttcatggcaatcctcatctttgttacattaacattcctccatggaaccaaggatagatcgatgcttattgggattgtggctatagtcttcaatatcatcatgtacacctcaccactgaccgtcatgaagaaggtgatcaccaccaagagtgtgaaatacatgccattttacttgtcactagcaaactttgctaatggcattgtttgggcatgctatgcactcctcaaatttgatccttatatcctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0197N20.1" temp_strand="+" temp_description="C06HBa0197N20.1  AC211062.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0197N20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98348" stop="99942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98634" g_stop="99172" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99173" i_stop="99266" i_length="94">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.577" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99267" g_stop="99428" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="703" r_length="162" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99429" i_stop="99522" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99523" g_stop="99642" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="823" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0197N20.1" gen_strand="+" ref_id="SGN-U313645" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0197N20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98634" e_stop="99172"/>
          <exon e_start="99267" e_stop="99428"/>
          <exon e_start="99523" e_stop="99642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCGTGGCTGC-CTAAAACCAAAAAAAAACAATAAAACAATAACAGCCTCCATGCAAA-TCGCAATTTTCAATAATTAATAATACTTGCCATCTCCTAGCAATAAAATTCGTAATTCTA--A-AGT-TAAA------AAAATTTAAAGATGGCAGATCCAGACACCACTAGGACGGTTGTAGGAATCATTGGTAATGTCATATCTTTCTTCCTCTTCTTGTCCCCAGGGTAAGTTTCATCTCTAATCTCTTCTTCGCGATCGATTAATTTAATTCTCTCCTTACTCAAGGCTCAAAAAAATAAAAAATTATCGCTATTTATGATGTTTCGCAGGCCAACATTTGTCCAGATTTTGAAAGCAAAGTCAGTGATGGAATTCAAGCCAGATCCTTATATAGCAACAGTTTTGAATTGTGCAGTTTGGGTGTTTTATGGCATGCCATTTGTTCACCCTGACAGTCTTCTTGTCATCACCATTAACGGATTTGGTCTTGCTATTGAGTTACTCTACGTCTCAATCTTCTTCATCTACTCCGATTGGTCTAAGCGAGTATGTACATTACTGTCTATGTAAAAATTACTTCTTTTTTTTTTCTTCTAAACATATAGAATTTAACACATTGCTACAACGTACCTGCCTGCAGCAAAAGATCATAATTGCTTTGGTTATTGAAGCAATCTTCATGGCAATCCTCATCTTTGTTACATTAACATTCCTCCATGGAACCAAGGATAGATCAATGCTTATCGGGATTGTGGCTATAGTCTTCAATATCATCATGTACACCTCACCACTGACCGTCATGGTAAGTTACATTTATCAATTCAGTCAGATCTTTCTATAACAACGTCAAAAGCAACCCCCACATGCACTAATATAATCTCTTTCGTATTGAGCAGAAGAAGGTGATCACCACCAAGAGTGTAAAATACATGCCATTTTACTTGTCACTAGCAAACTTTGCTAATGGCATTGTTTGGGCATGCTATGCACTCCTCAAATTTGATCCTTATATCCTG</genome_strand>
        <mrna_strand>CTGCCTAAAACCAAAAAAAGAAAAAAAAAACAATAAAACAATAACAGCCTCCATGCAAATTTGCAATTTTCAATAATCAATAATACTTGCCATCTCCTAGCAATAAAATTTGTAATTCTAGCATCGTATAAAGTTACAAAAATTTAAAGATGGCAGATACAGACACCATTAGGACAGTTGTAGGAATCATTGGTAATGTCATATCTTTCTTCCTCTTCTTGTCCCCAGGGTAAG-TTCATCTCTAA--TC-TCTTCACGATCGACTAATCTAATTCTCTCCTTACTCAAGGCTC----AAA-AAAAAA-CATCGCTATTTATGATGTTTCGCAGGCCAACATTTGTAAAAATTTTGAAAGCAAAGTCAGTGATGGAATTCAAGCCAGATCCTTATATAGCAACAGTTTTGAATTGTGCAGTTTGGGTGTTTTATGGCATGCCATTTGTTCACCCTGACAGTCTTCTTGTCATCACCATTAACGGATTTGGTCTTGCTATTGAGTTACTCTACGTCTCAATCTTCTTCATCTACTCCGATTGGTCTAAGCGA..............................................................................................CAAAAGATCATAATTGCTTTGATTATTGAAGCAATCTTCATGGCAATCCTCATCTTTGTTACATTAACATTCCTCCATGGAACCAAGGATAGATCGATGCTTATTGGGATTGTGGCTATAGTCTTCAATATCATCATGTACACCTCACCACTGACCGTCATG..............................................................................................AAGAAGGTGATCACCACCAAGAGTGTGAAATACATGCCATTTTACTTGTCACTAGCAAACTTTGCTAATGGCATTGTTTGGGCATGCTATGCACTCCTCAAATTTGATCCTTATATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313644" ref_strand="+" ref_description="SGN-U313644        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | nodulin MtN3 family protein, contains Pfam PF03083 MtN3/saliva family; similar to LIM7 (cDNAs induced in meiotic prophase in lily microsporocytes) GI:431154 from (Lilium longiflorum) | chr5:25247904-25248503 REVERSE | Aliases: MQB2.17, MQB2_17(evalue: 6e-42, score=166) genbank/nr: gi|37050896|emb|CAE47557.1| seven-transmembrane-domain protein 1 [Lycopersicon esculentum](evalue: 4e-77, score=289)">
      <seq>tggctgcctaaaaccaaaaaaaaacaataaaacaataacagcctccatgcaaatcgcaattttcaataattaataatacttgccatctcctagcaataaaattcgtaattctaaagttaaaaaaatttaaagatggcagatccagacaccactaggacggttgtaggaatcattggtaatgtcatatctttcttcctcttcttgtccccagggccaacatttgtccagattttgaaagcaaagtcagtgatggaattcaagccagatccttatatagcaacagttttgaattgtgcagtttgggtgttttatggcatgccatttgttcaccctgacagtcttcttgtcatcaccattaacggatttggtcttgctattgagttactctacgtctcaatcttcttcatctactccgattggtctaagcgacaaaagatcataattgctttggttattgaagcaatcttcatggcaatcctcatctttgttacattaacattcctccatggaaccaaggatagatcaatgcttatcgggattgtggctatagtcttcaatatcatcatgtaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0197N20.1" temp_strand="+" temp_description="C06HBa0197N20.1  AC211062.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0197N20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98339" stop="99708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98639" g_stop="98850" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98851" i_stop="98955" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98956" g_stop="99172" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="429" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99173" i_stop="99266" i_length="94">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.577" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99267" g_stop="99408" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="571" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0197N20.1" gen_strand="+" ref_id="SGN-U313644" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0197N20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98639" e_stop="98850"/>
          <exon e_start="98956" e_stop="99172"/>
          <exon e_start="99267" e_stop="99408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTGCCTAAAACCAAAAAAAAACAATAAAACAATAACAGCCTCCATGCAAATCGCAATTTTCAATAATTAATAATACTTGCCATCTCCTAGCAATAAAATTCGTAATTCTAAAGTTAAAAAAATTTAAAGATGGCAGATCCAGACACCACTAGGACGGTTGTAGGAATCATTGGTAATGTCATATCTTTCTTCCTCTTCTTGTCCCCAGGGTAAGTTTCATCTCTAATCTCTTCTTCGCGATCGATTAATTTAATTCTCTCCTTACTCAAGGCTCAAAAAAATAAAAAATTATCGCTATTTATGATGTTTCGCAGGCCAACATTTGTCCAGATTTTGAAAGCAAAGTCAGTGATGGAATTCAAGCCAGATCCTTATATAGCAACAGTTTTGAATTGTGCAGTTTGGGTGTTTTATGGCATGCCATTTGTTCACCCTGACAGTCTTCTTGTCATCACCATTAACGGATTTGGTCTTGCTATTGAGTTACTCTACGTCTCAATCTTCTTCATCTACTCCGATTGGTCTAAGCGAGTATGTACATTACTGTCTATGTAAAAATTACTTCTTTTTTTTTTCTTCTAAACATATAGAATTTAACACATTGCTACAACGTACCTGCCTGCAGCAAAAGATCATAATTGCTTTGGTTATTGAAGCAATCTTCATGGCAATCCTCATCTTTGTTACATTAACATTCCTCCATGGAACCAAGGATAGATCAATGCTTATCGGGATTGTGGCTATAGTCTTCAATATCATCATGTACA</genome_strand>
        <mrna_strand>TGGCTGCCTAAAACCAAAAAAAAACAATAAAACAATAACAGCCTCCATGCAAATCGCAATTTTCAATAATTAATAATACTTGCCATCTCCTAGCAATAAAATTCGTAATTCTAAAGTTAAAAAAATTTAAAGATGGCAGATCCAGACACCACTAGGACGGTTGTAGGAATCATTGGTAATGTCATATCTTTCTTCCTCTTCTTGTCCCCAGG.........................................................................................................GCCAACATTTGTCCAGATTTTGAAAGCAAAGTCAGTGATGGAATTCAAGCCAGATCCTTATATAGCAACAGTTTTGAATTGTGCAGTTTGGGTGTTTTATGGCATGCCATTTGTTCACCCTGACAGTCTTCTTGTCATCACCATTAACGGATTTGGTCTTGCTATTGAGTTACTCTACGTCTCAATCTTCTTCATCTACTCCGATTGGTCTAAGCGA..............................................................................................CAAAAGATCATAATTGCTTTGGTTATTGAAGCAATCTTCATGGCAATCCTCATCTTTGTTACATTAACATTCCTCCATGGAACCAAGGATAGATCAATGCTTATCGGGATTGTGGCTATAGTCTTCAATATCATCATGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335063" ref_strand="+" ref_description="SGN-U335063        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G50000.1 | Symbol: None | protein kinase, putative, similar to protein kinase ATMRK1 (Arabidopsis thaliana) gi:2351097:dbj:BAA22079 | chr5:20359813-20362359 REVERSE | Aliases: MPF21.1, MPF21_1 (evalue: 1e-142, score=502) genbank/nr: gi|15240597|ref|NP_199811.1| protein kinase, putative [Arabidopsis thaliana] gi|10177211|dbj|BAB10286.1| protein kinase [Arabidopsis thaliana](evalue: 7e-141, score=502)">
      <seq>tttatgatggtcaagatgttgctgttaaacttctggactggggggaagagggacacagaacagaagctgaaatagcatcactaagggcagcttttactcaagaagtttcagtgtggcataaacttgaccatcctaatgtaaccaagttcatcggagcgaccatgggagcttctggtctaaatatacaaacagaaaatggtcatattggcatgcctagtaatatatgttgtgttgttgtggaatatcttccgggcggtgccttaaaatcttaccttatcaagaacagaagaaagaagctagcatttaaagttgtagtgcagattgcacttgatttggccagagggttaagttaccttcatactcagaagattgtgcacagagatgtcaagacagagaatatgctgttggacaagacacgtactgtaaagattgcagactttggggttgcacgagttgaggcctctaatcctaatgacatgacgggggagacaggaacccttggctatatggctcctgaggttctcaatggcaacccctacaacaggaaatgcgatgtgtatagttttggcatatgtttgtgggagatatactgctgtgacatgccatatcctgatctcagtttctcagaagtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0197N20.1" temp_strand="-" temp_description="C06HBa0197N20.1  AC211062.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0197N20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="104176" stop="100654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103876" g_stop="103853" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103852" i_stop="103129" i_length="724">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103128" g_stop="103007" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="146" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103006" i_stop="101933" i_length="1074">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101932" g_stop="101736" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="343" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101735" i_stop="101637" i_length="99">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101636" g_stop="101462" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="518" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101461" i_stop="101070" i_length="392">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101069" g_stop="100954" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="634" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0197N20.1" gen_strand="-" ref_id="SGN-U335063" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0197N20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103876" e_stop="103853"/>
          <exon e_start="103128" e_stop="103007"/>
          <exon e_start="101932" e_stop="101736"/>
          <exon e_start="101636" e_stop="101462"/>
          <exon e_start="101069" e_stop="100954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATGATGGTCAAGATGTTGCTGGTCAGTTCTTGATTTTCAAAATAATCTTTTAAACCATACAATTTCTTGTATTTAGCTTTAATATGACAAAATGGTAAAAAATGGTTCTTGCAAATACTAAAGATTTGATTTTTTTTACTTGTGTGGTGGAATTTTGTGTTAAGGTCCATATTAATCCTGTGGGGTTCAGTTTTAAGCTCGTGGGGTTCCTCTAAGCTGCTGGAATAATGATACTTTTTTTTTTCTTTCTGGGGTTGTTCTTGTTGTTAATTTTTTTAATCCTTTTTCTTGATTGGTGTTTGGGGGTGGAGGGGTTTGGATTTTGCTGAATACTGGTTAGTCATTTTGAGCTTTTTCTTATGCAATCCGTGAATAGAGGCACGGGTTTGTGTTGAATTTCTTGCAAGTTGCAGATGACGGCATTAACTTGGCTGTGTCTTGCATTTGTTGCTGTATATCTGAACTTTCATGTGAACCAATCTGTTACTCATTTAAGTATTAAAGTAATGCATGACATCTATTACAATTCTGGATCTCATTTTCCTGTTCCCTCTTTATTGCAGTGTTAGTTTTATTGTCATTGTCATTGTCATTGTCATAGTCATTGCTACAGGGAATTAACATTGTCCATACTTGCTCTTTTTTCTTTTTGCCCTTTTTCCTGGTTCAATTTGCAAAATTTGGCACCAGTTAAAAGGAAAAATGTAACTTTTAGTTAACACGTGAGTTATTTTGTGACACTCAGTTAAACTTCTGGACTGGGGGGAAGAGGGACACAGAACAGAAGCTGAAATAGCATCACTAAGGGCAGCTTTTACTCAAGAAGTTTCAGTGTGGCATAAACTTGACCATCCTAATGTAACCAAGGTGACGTTAAGCCTCTAAAACTCATAATGTGTAGGAAGGGTTTAGAGCTTGTTGGATGTTGCTGCTTGTTGTTTAAACTTAATAGAAATATGCCTGGAGTATATGTCTAATTTTGTGCTGTAATCCTTAAAACTTTTATGTAAGTCATTTTTATTTATGTACTTGAGTCGTGAACGTCCCTATGTGTGCATCTTGATTTCTTTTTGCATGGTCCAAGCACTCGACCATAAAACTCAGGGGATTCTAATATCCTGTTCAATTGTATAAACCACCTCTTTCAACCATCAGCGGGTGATGGGAGAAAGAAACTTCACATCGGTAAAGTAACTGTTGTACGAAAAGATGCCACCAAATAAATTCAGGAAACGATAACAAAAACATTACAATTCTTGAATTACGTATTATTGAAGGTCAGCTTGAATGGAAGATTATAGTTTAGCCTTAACAATCACTCTTACAATGTTATCGCGATGTTTCAATTCTGTCATTCTTTCTTAAATCGTAATAAATTTGAGTTCTTATTAAATTTGCTAACTCTGAAAATTCGCTGCATTTGAGCTGTCGCATTGCACAGGGAGTGCAGAGTTCTTTATTCTTAAAACACCATTGCCAAGGCTCTAGTAGTAATGTGATTTACCTCAGATAATTCATTCATTGATGTAGCAGAAACTTATGTAAGTAAAGGAAAAAGCGTGCTCCTTCAGTGACGCCAAGAGTTATGTGAATCTTTCTCATGCCATTATTGGTAAGAAAGAATTCCAAGTCGAAGTTTACATTTTTTCTACTTTAGGGGCTGCTATTAATCTTTATTCATTAAGTTCGGATGATTCGATGTGTTACTTTTTAGTAGTACTTTTTAGTAGCTTATATTGAACATGATTAAAACTATGAGAAATATAGAACTTTATTCTGTCCAGGTTCTCATCTCATTCAAATGTCGATCATTTGCATGAACACAATTTCTACAAGAGACTGCATACGCACTGATTGAGTGATTGTTGCTTAGATGTAATCATAGCTTATAAATAAACTGTTTATATTACATAATAAAATCATCTCTTTCATGTGATATAGTTCATCGGAGCGACCATGGGAGCTTCTGGTCTAAATATACAAACAGAAAATGGTCATATTGGCATGCCTAGTAATATATGTTGTGTTGTTGTGGAATATCTTCCGGGCGGTGCCTTAAAATCTTACCTTATCAAGAACAGAAGAAAGAAGCTAGCATTTAAAGTTGTAGTGCAGATTGCACTTGATTTGGCCAGAGGGTAACTTGTACCTTGTTTCTTTTCTTCCTTTCTAACGCCCAGGTCTTTATCTACGATCTGTCATTCATCTCAACCAGGCCAATCAATTGAACTTTGTAGGTTAAGTTACCTTCATACTCAGAAGATTGTGCACAGAGATGTCAAGACAGAGAATATGCTGTTGGACAAGACACGTACTGTAAAGATTGCAGACTTTGGGGTTGCACGAGTTGAGGCCTCTAATCCTAATGACATGACGGGGGAGACAGGAACCCTTGGCTATATGGCTCCTGAGGTACATATTTTAACTGGAGTAGGATTTTTACCTTTCTTACAGATAACTTCAATTTATGTCTGTTTGTTTGTTCACTGTCCATTAGTTGATACTCTAATCACTTCTAGCGCATATAGACCTATTTTCTCGCTATCTCAGTGTACCTGCAATGCACTTAAGCCTATTGATCCACTATAAAATGAAATTTGATAATGTTAAACCTCTATGTTGAATATTTGTTACAACATCTTTTTTGTTTTTGCCTAATCTTCCTTTATAACTCCGGAAGAGGAATGGTAAGGATTAAGGGCTATAGTCCCCAAAATCAAGTCAATCAATAAAAATGTGATCCAAGAATAACACATTGCTGTATATGACGTTGAGCATTGTTGATATGTGTGCTTAAACTGCAGGTTCTCAATGGCAACCCCTACAACAGGAAATGCGATGTGTATAGTTTTGGCATATGTTTGTGGGAGATATACTGCTGTGACATGCCATATCCTGATCTCAGTTTCTCAGAAGTGAC</genome_strand>
        <mrna_strand>TTTATGATGGTCAAGATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAACTTCTGGACTGGGGGGAAGAGGGACACAGAACAGAAGCTGAAATAGCATCACTAAGGGCAGCTTTTACTCAAGAAGTTTCAGTGTGGCATAAACTTGACCATCCTAATGTAACCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATCGGAGCGACCATGGGAGCTTCTGGTCTAAATATACAAACAGAAAATGGTCATATTGGCATGCCTAGTAATATATGTTGTGTTGTTGTGGAATATCTTCCGGGCGGTGCCTTAAAATCTTACCTTATCAAGAACAGAAGAAAGAAGCTAGCATTTAAAGTTGTAGTGCAGATTGCACTTGATTTGGCCAGAGG...................................................................................................GTTAAGTTACCTTCATACTCAGAAGATTGTGCACAGAGATGTCAAGACAGAGAATATGCTGTTGGACAAGACACGTACTGTAAAGATTGCAGACTTTGGGGTTGCACGAGTTGAGGCCTCTAATCCTAATGACATGACGGGGGAGACAGGAACCCTTGGCTATATGGCTCCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCAATGGCAACCCCTACAACAGGAAATGCGATGTGTATAGTTTTGGCATATGTTTGTGGGAGATATACTGCTGTGACATGCCATATCCTGATCTCAGTTTCTCAGAAGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335062" ref_strand="+" ref_description="SGN-U335062        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G50000.1 | Symbol: None | protein kinase, putative, similar to protein kinase ATMRK1 (Arabidopsis thaliana) gi:2351097:dbj:BAA22079 | chr5:20359813-20362359 REVERSE | Aliases: MPF21.1, MPF21_1 (evalue: 3e-127, score=444) genbank/nr: gi|15240597|ref|NP_199811.1| protein kinase, putative [Arabidopsis thaliana] gi|10177211|dbj|BAB10286.1| protein kinase [Arabidopsis thaliana](evalue: 2e-125, score=444)">
      <seq>cctttacactacatacccccaacaagccctccttgttcttcttctttttcaattcttctactgtgaaactactaaaaatccaatctttacaactttgcagaagcaaaaatggagaagggcagtgatgggtttgtgagagcagatcagattgatttgaagagcttggatgaacaacttgaaaggcatcttatcagagcaagaactatggacaaggataagaataagaagaaaccacaagatgattcttccattaactacaacatttctattgctacagtggccaaccaccccaccacccccaaccccaaccccaacctctctctgtttagctcatctgttcctaggcaaagatatgagtgggaaattgacccttcaaagctcatcatcaaaactgttcttgctcgtggaacctttggtactgtccaccgtggcgtttatgatggtcaagatgttgctgttaaacttctggactggggggaagagggacacagaacagaagctgaaatagcatcactaagggcagcttttactcaagaagtttcagtgtggcataaacttgaccatcctaatgtaaccaagttcatcggagcgaccatgggagcttctggtctaaatatacaaacagaaaatggtcatattggcatgcctagtaatatatgttgtgttgttgtggaatatcttccgggcggtgccttaaaatcttaccttatcaagaacagaagaaagaagctagcatttaaagttgtagtgcagattgcacttgatttggccagagggttaagttaccttcatactcagaagattgtgcacagagatgtcaagacagagaatatgctgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0197N20-3cbf5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0197N20.1" temp_strand="-" temp_description="C06HBa0197N20.1  AC211062.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0197N20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="104608" stop="101272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104309" g_stop="103853" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103852" i_stop="103129" i_length="724">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103128" g_stop="103007" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="579" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103006" i_stop="101933" i_length="1074">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101932" g_stop="101736" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="776" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101735" i_stop="101637" i_length="99">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101636" g_stop="101572" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="841" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0197N20.1" gen_strand="-" ref_id="SGN-U335062" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0197N20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104309" e_stop="103853"/>
          <exon e_start="103128" e_stop="103007"/>
          <exon e_start="101932" e_stop="101736"/>
          <exon e_start="101636" e_stop="101572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTACACTACATACCCCCAACAAGCCCTCCTTGTTCTTCTTCTTTTTCAATTCTTCTACTGTGAAACTACTAAAAATCCAATCTTTACAACTTTGCAGAAGCAAAAATGGAGAAGGGCAGTGATGGGTTTGTGAGAGCAGATCAGATTGATTTGAAGAGCTTGGATGAACAACTTGAAAGGCATCTTATCAGAGCAAGAACTATGGACAAGGATAAGAATAAGAAGAAACCACAAGATGATTCTTCCATTAACTACAACATTTCTATTGCTACAGTGGCCAACCACCCCACCACCCCCAACCCCAACCCCAACCTCTCTCTGTTTAGCTCATCTGTTCCTAGGCAAAGATATGAGTGGGAAATTGACCCTTCAAAGCTCATCATCAAAACTGTTCTTGCTCGTGGAACCTTTGGTACTGTCCACCGTGGCGTTTATGATGGTCAAGATGTTGCTGGTCAGTTCTTGATTTTCAAAATAATCTTTTAAACCATACAATTTCTTGTATTTAGCTTTAATATGACAAAATGGTAAAAAATGGTTCTTGCAAATACTAAAGATTTGATTTTTTTTACTTGTGTGGTGGAATTTTGTGTTAAGGTCCATATTAATCCTGTGGGGTTCAGTTTTAAGCTCGTGGGGTTCCTCTAAGCTGCTGGAATAATGATACTTTTTTTTTTCTTTCTGGGGTTGTTCTTGTTGTTAATTTTTTTAATCCTTTTTCTTGATTGGTGTTTGGGGGTGGAGGGGTTTGGATTTTGCTGAATACTGGTTAGTCATTTTGAGCTTTTTCTTATGCAATCCGTGAATAGAGGCACGGGTTTGTGTTGAATTTCTTGCAAGTTGCAGATGACGGCATTAACTTGGCTGTGTCTTGCATTTGTTGCTGTATATCTGAACTTTCATGTGAACCAATCTGTTACTCATTTAAGTATTAAAGTAATGCATGACATCTATTACAATTCTGGATCTCATTTTCCTGTTCCCTCTTTATTGCAGTGTTAGTTTTATTGTCATTGTCATTGTCATTGTCATAGTCATTGCTACAGGGAATTAACATTGTCCATACTTGCTCTTTTTTCTTTTTGCCCTTTTTCCTGGTTCAATTTGCAAAATTTGGCACCAGTTAAAAGGAAAAATGTAACTTTTAGTTAACACGTGAGTTATTTTGTGACACTCAGTTAAACTTCTGGACTGGGGGGAAGAGGGACACAGAACAGAAGCTGAAATAGCATCACTAAGGGCAGCTTTTACTCAAGAAGTTTCAGTGTGGCATAAACTTGACCATCCTAATGTAACCAAGGTGACGTTAAGCCTCTAAAACTCATAATGTGTAGGAAGGGTTTAGAGCTTGTTGGATGTTGCTGCTTGTTGTTTAAACTTAATAGAAATATGCCTGGAGTATATGTCTAATTTTGTGCTGTAATCCTTAAAACTTTTATGTAAGTCATTTTTATTTATGTACTTGAGTCGTGAACGTCCCTATGTGTGCATCTTGATTTCTTTTTGCATGGTCCAAGCACTCGACCATAAAACTCAGGGGATTCTAATATCCTGTTCAATTGTATAAACCACCTCTTTCAACCATCAGCGGGTGATGGGAGAAAGAAACTTCACATCGGTAAAGTAACTGTTGTACGAAAAGATGCCACCAAATAAATTCAGGAAACGATAACAAAAACATTACAATTCTTGAATTACGTATTATTGAAGGTCAGCTTGAATGGAAGATTATAGTTTAGCCTTAACAATCACTCTTACAATGTTATCGCGATGTTTCAATTCTGTCATTCTTTCTTAAATCGTAATAAATTTGAGTTCTTATTAAATTTGCTAACTCTGAAAATTCGCTGCATTTGAGCTGTCGCATTGCACAGGGAGTGCAGAGTTCTTTATTCTTAAAACACCATTGCCAAGGCTCTAGTAGTAATGTGATTTACCTCAGATAATTCATTCATTGATGTAGCAGAAACTTATGTAAGTAAAGGAAAAAGCGTGCTCCTTCAGTGACGCCAAGAGTTATGTGAATCTTTCTCATGCCATTATTGGTAAGAAAGAATTCCAAGTCGAAGTTTACATTTTTTCTACTTTAGGGGCTGCTATTAATCTTTATTCATTAAGTTCGGATGATTCGATGTGTTACTTTTTAGTAGTACTTTTTAGTAGCTTATATTGAACATGATTAAAACTATGAGAAATATAGAACTTTATTCTGTCCAGGTTCTCATCTCATTCAAATGTCGATCATTTGCATGAACACAATTTCTACAAGAGACTGCATACGCACTGATTGAGTGATTGTTGCTTAGATGTAATCATAGCTTATAAATAAACTGTTTATATTACATAATAAAATCATCTCTTTCATGTGATATAGTTCATCGGAGCGACCATGGGAGCTTCTGGTCTAAATATACAAACAGAAAATGGTCATATTGGCATGCCTAGTAATATATGTTGTGTTGTTGTGGAATATCTTCCGGGCGGTGCCTTAAAATCTTACCTTATCAAGAACAGAAGAAAGAAGCTAGCATTTAAAGTTGTAGTGCAGATTGCACTTGATTTGGCCAGAGGGTAACTTGTACCTTGTTTCTTTTCTTCCTTTCTAACGCCCAGGTCTTTATCTACGATCTGTCATTCATCTCAACCAGGCCAATCAATTGAACTTTGTAGGTTAAGTTACCTTCATACTCAGAAGATTGTGCACAGAGATGTCAAGACAGAGAATATGCTGTTGG</genome_strand>
        <mrna_strand>CCTTTACACTACATACCCCCAACAAGCCCTCCTTGTTCTTCTTCTTTTTCAATTCTTCTACTGTGAAACTACTAAAAATCCAATCTTTACAACTTTGCAGAAGCAAAAATGGAGAAGGGCAGTGATGGGTTTGTGAGAGCAGATCAGATTGATTTGAAGAGCTTGGATGAACAACTTGAAAGGCATCTTATCAGAGCAAGAACTATGGACAAGGATAAGAATAAGAAGAAACCACAAGATGATTCTTCCATTAACTACAACATTTCTATTGCTACAGTGGCCAACCACCCCACCACCCCCAACCCCAACCCCAACCTCTCTCTGTTTAGCTCATCTGTTCCTAGGCAAAGATATGAGTGGGAAATTGACCCTTCAAAGCTCATCATCAAAACTGTTCTTGCTCGTGGAACCTTTGGTACTGTCCACCGTGGCGTTTATGATGGTCAAGATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAACTTCTGGACTGGGGGGAAGAGGGACACAGAACAGAAGCTGAAATAGCATCACTAAGGGCAGCTTTTACTCAAGAAGTTTCAGTGTGGCATAAACTTGACCATCCTAATGTAACCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATCGGAGCGACCATGGGAGCTTCTGGTCTAAATATACAAACAGAAAATGGTCATATTGGCATGCCTAGTAATATATGTTGTGTTGTTGTGGAATATCTTCCGGGCGGTGCCTTAAAATCTTACCTTATCAAGAACAGAAGAAAGAAGCTAGCATTTAAAGTTGTAGTGCAGATTGCACTTGATTTGGCCAGAGG...................................................................................................GTTAAGTTACCTTCATACTCAGAAGATTGTGCACAGAGATGTCAAGACAGAGAATATGCTGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>27</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="9563" PGL_stop="14853"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9563" e_stop="9728"/>
            <exon e_start="9836" e_stop="9874"/>
            <exon e_start="10151" e_stop="10217"/>
            <exon e_start="10306" e_stop="10379"/>
            <exon e_start="11519" e_stop="11584"/>
            <exon e_start="13141" e_stop="13260"/>
            <exon e_start="13396" e_stop="13509"/>
            <exon e_start="14131" e_stop="14853"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.806" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.803" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9563" e_stop="9728" e_length="166"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.992">
            <gDNA_intron_boundary i_start="9729" i_stop="9835" i_length="107"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9836" e_stop="9874" e_length="39"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.806">
            <gDNA_intron_boundary i_start="9875" i_stop="10150" i_length="276"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10151" e_stop="10217" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.939">
            <gDNA_intron_boundary i_start="10218" i_stop="10305" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10306" e_stop="10379" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="10380" i_stop="11518" i_length="1139"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="11519" e_stop="11584" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="11585" i_stop="13140" i_length="1556"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="13141" e_stop="13260" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.803">
            <gDNA_intron_boundary i_start="13261" i_stop="13395" i_length="135"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="13396" e_stop="13509" e_length="114"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.978">
            <gDNA_intron_boundary i_start="13510" i_stop="14130" i_length="621"/>
          </intron>
          <exon e_serial="8" e_score="0.985">
            <gDNA_exon_boundary e_start="14131" e_stop="14853" e_length="723"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9563" stop="9728"/>
              <exon start="9836" stop="9874"/>
              <exon start="10151" stop="10217"/>
              <exon start="10306" stop="10379"/>
              <exon start="11519" stop="11584"/>
              <exon start="13141" stop="13260"/>
              <exon start="13396" stop="13509"/>
              <exon start="14131" stop="14853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320387" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGACAGCCTTCAAAATCTGTACAAAATTGTTCCTTCAATACATATCTACTCATCGATCCCTGAACGGTAGCATTACCGGAGAATAAAAAAGTTCGAATTTTTCTCAGTTTGGTCGCTCCAATTTCAAACATTTGCTTACTGAAATGAAAGGGGCAGATTTTAAATG : GTACGATGGGTTCTTCCTGTCAATGTTAGCAACCAGTAT : AATCATTGTGGCGATAAATTGGAAGCGGTACCATCTTTGTATATATCCGTTGCACATTTGGATTGTG : GTTGACTACACAACAGTGTTTCTTTTTCGTCTCTTGATGTTTGTTGATAATGGACTTGCTGCTGGAATGGGATT : TGGTTAACTAGAAGGCAAGCCCATTCTTTACGTGCTCAACAAGGGATTCCTACTTCCGAATTTGGG : GTGCTGGTTGACATGATCAGAGTGCCAGATTGGACTTTTGCAGCAGCAGGGCAGGAGATGAGAGCAATGGGCCCTGATGCTACTTCTTATCATCCAGGACTTTACTTAACCCAAGCTCAG : ACAGAAGCAGTGGAAGCACTCATTCAGGAACTGCCAAAGTTCTGCCTGAAGGCTGTTCCTACTGACTGTAGCGAGTGCCCTATCTGTTTGGAAGAGTTTCGCATGGGAAATGAG : GTTCGTGGTCTGCCTTGTGCTCACAACTTTCACGTGGAATGCATTGATGAATGGCTTCGCCTAAACGTGAAATGCCCTAGATGCCGCTCTTCTGTCTTTCCAAATCTTGATCTCAGTGCTTTATCCAATATCCGAACCGATTCAGAGGGGTCAACAGCCAATGTTGTGACAGCAGCACAGTATGTGAGATCCCAACCCTCCAGCCAGAGCTATCTGCTAAGAATGCAAGGTTTGCTCCGCCCTGTACGCACACAAGATGCTGGCCTGGGCAGTGAGGTAGATCCAGCTGATAGCAGCAACCAAGCATCCACACCTCATAGTCACGGATTCGTGGAACCAGTACAAGTTATAGTGGAACAGTCCCCAAGGGAGCTATAACCATACTTCCTGAGGAGGTTCTTTACCTCAAATGTCTTAACTTGATGATTCCTAACAACTTGTAGCCATTGTCAAGTGTTCGAAGTGGTTTTTCATTGCAACCAAATTTCATCAATTGGAAATGTGGTAGCAATGATTTATGTTCACAGCCAGCTTGTTCTGATGGAACAATATATGTTTGTTTTACCACGAGTCATATCGATTAATTCACATACGGTTTTTTTCTGTGTTTAAATGAACCTTCAAGACTTTGTTTCCCATTACTAAAACTGTATAAGTAACACAATCTGGTGCTACTTGTTAATACTAAAGTAGTTATATATGGTTTCCAATTCTTATCATAAA</gDNA_template>
            <first_frame> R  Q  P  S  K  S  V  Q  N  C  S  F  N  T  Y  L  L  I  D  P  *  T  V  A  L  P  E  N  K  K  V  R  I  F  L  S  L  V  A  P  I  S  N  I  C  L  L  K  *  K  G  Q  I  L  N   : G  T  M  G  S  S  C  Q  C  *  Q  P  V   : *  S  L  W  R  *  I  G  S  G  T  I  F  V  Y  I  R  C  T  F  G  L  W :   L  T  T  Q  Q  C  F  F  F  V  S  *  C  L  L  I  M  D  L  L  L  E  W  D   : L  V  N  *  K  A  S  P  F  F  T  C  S  T  R  D  S  Y  F  R  I  W   : G  A  G  *  H  D  Q  S  A  R  L  D  F  C  S  S  R  A  G  D  E  S  N  G  P  *  C  Y  F  L  S  S  R  T  L  L  N  P  S  S   : D  R  S  S  G  S  T  H  S  G  T  A  K  V  L  P  E  G  C  S  Y  *  L  *  R  V  P  Y  L  F  G  R  V  S  H  G  K  *   : G  S  W  S  A  L  C  S  Q  L  S  R  G  M  H  *  *  M  A  S  P  K  R  E  M  P  *  M  P  L  F  C  L  S  K  S  *  S  Q  C  F  I  Q  Y  P  N  R  F  R  G  V  N  S  Q  C  C  D  S  S  T  V  C  E  I  P  T  L  Q  P  E  L  S  A  K  N  A  R  F  A  P  P  C  T  H  T  R  C  W  P  G  Q  *  G  R  S  S  *  *  Q  Q  P  S  I  H  T  S  *  S  R  I  R  G  T  S  T  S  Y  S  G  T  V  P  K  G  A  I  T  I  L  P  E  E  V  L  Y  L  K  C  L  N  L  M  I  P  N  N  L  *  P  L  S  S  V  R  S  G  F  S  L  Q  P  N  F  I  N  W  K  C  G  S  N  D  L  C  S  Q  P  A  C  S  D  G  T  I  Y  V  C  F  T  T  S  H  I  D  *  F  T  Y  G  F  F  L  C  L  N  E  P  S  R  L  C  F  P  L  L  K  L  Y  K  *  H  N  L  V  L  L  V  N  T  K  V  V  I  Y  G  F  Q  F  L  S  *  </first_frame>
            <second_frame>  D  S  L  Q  N  L  Y  K  I  V  P  S  I  H  I  Y  S  S  I  P  E  R  *  H  Y  R  R  I  K  K  F  E  F  F  S  V  W  S  L  Q  F  Q  T  F  A  Y  *  N  E  R  G  R  F  *  M  :  V  R  W  V  L  P  V  N  V  S  N  Q  Y  :  N  H  C  G  D  K  L  E  A  V  P  S  L  Y  I  S  V  A  H  L  D  C   : G  *  L  H  N  S  V  S  F  S  S  L  D  V  C  *  *  W  T  C  C  W  N  G  I  :  W  L  T  R  R  Q  A  H  S  L  R  A  Q  Q  G  I  P  T  S  E  F  G  :  V  L  V  D  M  I  R  V  P  D  W  T  F  A  A  A  G  Q  E  M  R  A  M  G  P  D  A  T  S  Y  H  P  G  L  Y  L  T  Q  A  Q  :  T  E  A  V  E  A  L  I  Q  E  L  P  K  F  C  L  K  A  V  P  T  D  C  S  E  C  P  I  C  L  E  E  F  R  M  G  N  E  :  V  R  G  L  P  C  A  H  N  F  H  V  E  C  I  D  E  W  L  R  L  N  V  K  C  P  R  C  R  S  S  V  F  P  N  L  D  L  S  A  L  S  N  I  R  T  D  S  E  G  S  T  A  N  V  V  T  A  A  Q  Y  V  R  S  Q  P  S  S  Q  S  Y  L  L  R  M  Q  G  L  L  R  P  V  R  T  Q  D  A  G  L  G  S  E  V  D  P  A  D  S  S  N  Q  A  S  T  P  H  S  H  G  F  V  E  P  V  Q  V  I  V  E  Q  S  P  R  E  L  *  P  Y  F  L  R  R  F  F  T  S  N  V  L  T  *  *  F  L  T  T  C  S  H  C  Q  V  F  E  V  V  F  H  C  N  Q  I  S  S  I  G  N  V  V  A  M  I  Y  V  H  S  Q  L  V  L  M  E  Q  Y  M  F  V  L  P  R  V  I  S  I  N  S  H  T  V  F  F  C  V  *  M  N  L  Q  D  F  V  S  H  Y  *  N  C  I  S  N  T  I  W  C  Y  L  L  I  L  K  *  L  Y  M  V  S  N  S  Y  H  K </second_frame>
            <third_frame>   T  A  F  K  I  C  T  K  L  F  L  Q  Y  I  S  T  H  R  S  L  N  G  S  I  T  G  E  *  K  S  S  N  F  S  Q  F  G  R  S  N  F  K  H  L  L  T  E  M  K  G  A  D  F  K  W :   Y  D  G  F  F  L  S  M  L  A  T  S  I :   I  I  V  A  I  N  W  K  R  Y  H  L  C  I  Y  P  L  H  I  W  I  V  :  V  D  Y  T  T  V  F  L  F  R  L  L  M  F  V  D  N  G  L  A  A  G  M  G  F :   G  *  L  E  G  K  P  I  L  Y  V  L  N  K  G  F  L  L  P  N  L  G :   C  W  L  T  *  S  E  C  Q  I  G  L  L  Q  Q  Q  G  R  R  *  E  Q  W  A  L  M  L  L  L  I  I  Q  D  F  T  *  P  K  L  R :   Q  K  Q  W  K  H  S  F  R  N  C  Q  S  S  A  *  R  L  F  L  L  T  V  A  S  A  L  S  V  W  K  S  F  A  W  E  M  R :   F  V  V  C  L  V  L  T  T  F  T  W  N  A  L  M  N  G  F  A  *  T  *  N  A  L  D  A  A  L  L  S  F  Q  I  L  I  S  V  L  Y  P  I  S  E  P  I  Q  R  G  Q  Q  P  M  L  *  Q  Q  H  S  M  *  D  P  N  P  P  A  R  A  I  C  *  E  C  K  V  C  S  A  L  Y  A  H  K  M  L  A  W  A  V  R  *  I  Q  L  I  A  A  T  K  H  P  H  L  I  V  T  D  S  W  N  Q  Y  K  L  *  W  N  S  P  Q  G  S  Y  N  H  T  S  *  G  G  S  L  P  Q  M  S  *  L  D  D  S  *  Q  L  V  A  I  V  K  C  S  K  W  F  F  I  A  T  K  F  H  Q  L  E  M  W  *  Q  *  F  M  F  T  A  S  L  F  *  W  N  N  I  C  L  F  Y  H  E  S  Y  R  L  I  H  I  R  F  F  S  V  F  K  *  T  F  K  T  L  F  P  I  T  K  T  V  *  V  T  Q  S  G  A  T  C  *  Y  *  S  S  Y  I  W  F  P  I  L  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0197N20.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10356" stop="10379"/>
                    <exon start="11519" stop="11584"/>
                    <exon start="13141" stop="13260"/>
                    <exon start="13396" stop="13509"/>
                    <exon start="14131" stop="14508"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WTCCWNGIWLTRRQAHSLRAQQGIPTSEFGVLVDMIRVPDWTFAAAGQEMRAMGPDATSYHPGLYLTQAQTEAVEALIQELPKFCLKAVPTDCSECPICLEEFRMGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRSSVFPNLDLSALSNIRTDSEGSTANVVTAAQYVRSQPSSQSYLLRMQGLLRPVRTQDAGLGSEVDPADSSNQASTPHSHGFVEPVQVIVEQSPREL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0197N20.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9649" stop="9728"/>
                    <exon start="9836" stop="9874"/>
                    <exon start="10151" stop="10217"/>
                    <exon start="10306" stop="10379"/>
                    <exon start="11519" stop="11525"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSSNFSQFGRSNFKHLLTEMKGADFKWYDGFFLSMLATSIIIVAINWKRYHLCIYPLHIWIVVDYTTVFLFRLLMFVDNGLAAGMGFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="15432" PGL_stop="23481"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15432" e_stop="15806"/>
            <exon e_start="18438" e_stop="18554"/>
            <exon e_start="18680" e_stop="18745"/>
            <exon e_start="18993" e_stop="19099"/>
            <exon e_start="19174" e_stop="19255"/>
            <exon e_start="19731" e_stop="20438"/>
            <exon e_start="20752" e_stop="20875"/>
            <exon e_start="21126" e_stop="21292"/>
            <exon e_start="21365" e_stop="21439"/>
            <exon e_start="22805" e_stop="22897"/>
            <exon e_start="23021" e_stop="23481"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.879" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.882" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15432" e_stop="15806" e_length="375"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15807" i_stop="18437" i_length="2631"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18438" e_stop="18554" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.879">
            <gDNA_intron_boundary i_start="18555" i_stop="18679" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18680" e_stop="18745" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.950" acc_prob="0.991">
            <gDNA_intron_boundary i_start="18746" i_stop="18992" i_length="247"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18993" e_stop="19099" e_length="107"/>
          </exon>
          <intron i_serial="4" don_prob="0.882" acc_prob="0.933">
            <gDNA_intron_boundary i_start="19100" i_stop="19173" i_length="74"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19174" e_stop="19255" e_length="82"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19256" i_stop="19730" i_length="475"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="19731" e_stop="20438" e_length="708"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="20439" i_stop="20751" i_length="313"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="20752" e_stop="20875" e_length="124"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.900">
            <gDNA_intron_boundary i_start="20876" i_stop="21125" i_length="250"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="21126" e_stop="21292" e_length="167"/>
          </exon>
          <intron i_serial="8" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="21293" i_stop="21364" i_length="72"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="21365" e_stop="21439" e_length="75"/>
          </exon>
          <intron i_serial="9" don_prob="0.986" acc_prob="0.986">
            <gDNA_intron_boundary i_start="21440" i_stop="22804" i_length="1365"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="22805" e_stop="22897" e_length="93"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="22898" i_stop="23020" i_length="123"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="23021" e_stop="23481" e_length="461"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15432" stop="15806"/>
              <exon start="18438" stop="18554"/>
              <exon start="18680" stop="18745"/>
              <exon start="18993" stop="19099"/>
              <exon start="19174" stop="19255"/>
              <exon start="19731" stop="20017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19943" stop="20438"/>
              <exon start="20752" stop="20875"/>
              <exon start="21126" stop="21292"/>
              <exon start="21365" stop="21439"/>
              <exon start="22805" stop="22897"/>
              <exon start="23021" stop="23481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317164" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACACCATTTCCAAAGACTCCATAGAAGATCTCTTCGAAGAAGAAGAAGAAGAGTAAATATGGCGATGGCCAACGCTTGGGCTGCGGCGGGACACGTCACCGTCCGTCCTTCGCTATCTTCTTCATCACCTTCTTCTACTTATTTCGTTAATTTTCCAAATAAATCATTTCTTAAAAACCCCAAAAACTCCAGGCTTTGTTGCCGATGCGTTACTGTAAACAACACCGCAACTCCTTCTGCTGATGAAAATTGTAACAATACTTGCTTCGCTTCTTCTTCTTCTTCTTCGACATCGTTAGATTGGGATTGGAATCGGTGGACTCGCTATTTCTCTGAAATTGAACAAGTTGAGAGCTATGCCTCTGTGTTAAAG : TTTCAACTTGAAGAAGCTATAGAAAAGGAAGACTTTGAAGAAGCTGCAAAATTGAAAGCATCTATTGCAGAAGCTACATCGAAGGACTCAGTTGCTGAAATTATGTCCATGTTGAAG : AATGCAATAGATGAAGAGCGTTATCATGATGCTTCAAGATTGTGCCGAAGTACGGGAAGTGGCTTG : GTTGGTTGGTGGGTTGGGTATTCAAAAGATTCAGATGATCCATTTGGTAGACTAATACGTATTACTCCAGGTGTGGGCAGATTTATTGGCAGAAGTTTTACTCCAAA : ACAGTTGGTCAAAGCCTCTCCTGGAACTCCACTTTTTGAGATTTTTGTTGTCAAAGATGGAAATAACACTTACAACATGCAG : GTGGTGTTGTTGCAGCGAGCCAAAGGAAGTGCAGCAAGTTCAAGCCCATCATCCAAGTTGAAGCCAATGAAGGGACCTTCATCTGCTGAAATTGAGAACAGAGCTGTAATTGATGTTAAAGTAGATGAAGCAGAAGCAGAAGCAGAAAAAAGCAATGAGAAGAGCATAGATTTTGAGGGAGCTGCTGAAGAGGGAATAAGAAGTGTGATAAATTTTCTTAAAGATAAAATACCTGATCTGAAAGTGAAAGTAATGAAAGTCAATATTACTGAAGAAATGACAGATGATGGTGATTCAGTGAAGCAATTTCTGGAAGAAGAAGATGACAACACTATTTCCAGTGAGGAGACAGATGAAACAACTACTGATTTGGATAACATGAATTCCGACCGAGTTACAGTAGGAGGAGATAGCGGCACAAGTGAAGAAGGAAAAACTGTAGATACCAAGCTTTTTGTAGGGGGTGTATTACATAATAAAGAAGACAATCCATTAAAGGATGAGTTTGTTCGTTTCCCTGTTGAGATCAAAGATGTGGCAAAGGATTCCTTTGTGCTTCACATCCCCAAGAGACCTGGAGAACACGATGCTGAAGAAAATACTGCGTCAAGCATTAATGAGGCAGCTATTGCAGCTCAGAGTATCTCTGAACTAATGCCTCCTGATGTGGCCAAGGCATTTTGGAGTTCTGATAAAGCTTCTTCAAAA : GTTTCTAGAGATGTTAAGGAGATGCTAAAGCTTGCAGTTACTCAGGCACAGAAGCGATACAAATTATCTGAATACACAAGTTTTAGTCGAATAACCTCTCCTGGGGATTTAGATCCTTTTGAAG : GTCTATATGTTGGTGCATTTGGACCTTATGGAACTGAGGTAGTGCAATTAAGGCGGAAGTATGGTAACTGGAATGTAAATGATGCTGAAAAATCCTCTAATGTGGAGTTCTTTGAGTATGTTGAGGCGGTAAAGCTAACAGGGGATATCAATGTGCCTGCTGGCGAG : GTGACATTTCGAGCTAAAATAAGTAAAGGAAGTCGCTTGTCCAACAGGGGGATGTATCCAGATGAACTTGGTGTG : CTTGCTGGTTACAAGGGTCAAGGAAGAATAGCTGAATATGGTTTCAAAAACCCAAGGTGGGTTGAGGGAGAGCTTCTACAACTCAATGGAAAG : GGAATGGGGCCACACCTCAAAGGTGCAGACCTTGGCTTTCTTTATGTCATTCCGGAGCACAGCTTTCTTGTACTCTTCAATCGCTTGAAACTACCAGAGTAAAGATACAAGTTGATTGTATGACTTTGGACCCAGTTGTGTGGTTAGGCTAGGAGAAGATCATATTCCTTCTTCCAACAGATTTTTTCCCTTTTGCCAGATAACCTTTCCAGTGTTTTTATCAGAGAGGAATCAACCTTCAATGTGATCGAAAAAGCCAACCCTTTCCCCTCCCTTTTTGCCACTGTGAGTGTTTTGCTGTCCAATAATATGATACATCCTTTCAGTTTTCATCATAAACACTAAAAACTCATATCTTGTAATGCATTTTTTTTTGTTAAGAGATGATGTGGATAATAGTATTCTAGCTGAGTTGAAATTCATATATATTAATGAGTTCCTCTTCTCTACGGTCGTAGAAA</gDNA_template>
            <first_frame> K  H  H  F  Q  R  L  H  R  R  S  L  R  R  R  R  R  R  V  N  M  A  M  A  N  A  W  A  A  A  G  H  V  T  V  R  P  S  L  S  S  S  S  P  S  S  T  Y  F  V  N  F  P  N  K  S  F  L  K  N  P  K  N  S  R  L  C  C  R  C  V  T  V  N  N  T  A  T  P  S  A  D  E  N  C  N  N  T  C  F  A  S  S  S  S  S  S  T  S  L  D  W  D  W  N  R  W  T  R  Y  F  S  E  I  E  Q  V  E  S  Y  A  S  V  L  K  :  F  Q  L  E  E  A  I  E  K  E  D  F  E  E  A  A  K  L  K  A  S  I  A  E  A  T  S  K  D  S  V  A  E  I  M  S  M  L  K  :  N  A  I  D  E  E  R  Y  H  D  A  S  R  L  C  R  S  T  G  S  G  L  :  V  G  W  W  V  G  Y  S  K  D  S  D  D  P  F  G  R  L  I  R  I  T  P  G  V  G  R  F  I  G  R  S  F  T  P  K :   Q  L  V  K  A  S  P  G  T  P  L  F  E  I  F  V  V  K  D  G  N  N  T  Y  N  M  Q  :  V  V  L  L  Q  R  A  K  G  S  A  A  S  S  S  P  S  S  K  L  K  P  M  K  G  P  S  S  A  E  I  E  N  R  A  V  I  D  V  K  V  D  E  A  E  A  E  A  E  K  S  N  E  K  S  I  D  F  E  G  A  A  E  E  G  I  R  S  V  I  N  F  L  K  D  K  I  P  D  L  K  V  K  V  M  K  V  N  I  T  E  E  M  T  D  D  G  D  S  V  K  Q  F  L  E  E  E  D  D  N  T  I  S  S  E  E  T  D  E  T  T  T  D  L  D  N  M  N  S  D  R  V  T  V  G  G  D  S  G  T  S  E  E  G  K  T  V  D  T  K  L  F  V  G  G  V  L  H  N  K  E  D  N  P  L  K  D  E  F  V  R  F  P  V  E  I  K  D  V  A  K  D  S  F  V  L  H  I  P  K  R  P  G  E  H  D  A  E  E  N  T  A  S  S  I  N  E  A  A  I  A  A  Q  S  I  S  E  L  M  P  P  D  V  A  K  A  F  W  S  S  D  K  A  S  S  K  :  V  S  R  D  V  K  E  M  L  K  L  A  V  T  Q  A  Q  K  R  Y  K  L  S  E  Y  T  S  F  S  R  I  T  S  P  G  D  L  D  P  F  E   : G  L  Y  V  G  A  F  G  P  Y  G  T  E  V  V  Q  L  R  R  K  Y  G  N  W  N  V  N  D  A  E  K  S  S  N  V  E  F  F  E  Y  V  E  A  V  K  L  T  G  D  I  N  V  P  A  G  E  :  V  T  F  R  A  K  I  S  K  G  S  R  L  S  N  R  G  M  Y  P  D  E  L  G  V  :  L  A  G  Y  K  G  Q  G  R  I  A  E  Y  G  F  K  N  P  R  W  V  E  G  E  L  L  Q  L  N  G  K  :  G  M  G  P  H  L  K  G  A  D  L  G  F  L  Y  V  I  P  E  H  S  F  L  V  L  F  N  R  L  K  L  P  E  *  R  Y  K  L  I  V  *  L  W  T  Q  L  C  G  *  A  R  R  R  S  Y  S  F  F  Q  Q  I  F  S  L  L  P  D  N  L  S  S  V  F  I  R  E  E  S  T  F  N  V  I  E  K  A  N  P  F  P  S  L  F  A  T  V  S  V  L  L  S  N  N  M  I  H  P  F  S  F  H  H  K  H  *  K  L  I  S  C  N  A  F  F  F  V  K  R  *  C  G  *  *  Y  S  S  *  V  E  I  H  I  Y  *  *  V  P  L  L  Y  G  R  R   </first_frame>
            <second_frame>  N  T  I  S  K  D  S  I  E  D  L  F  E  E  E  E  E  E  *  I  W  R  W  P  T  L  G  L  R  R  D  T  S  P  S  V  L  R  Y  L  L  H  H  L  L  L  L  I  S  L  I  F  Q  I  N  H  F  L  K  T  P  K  T  P  G  F  V  A  D  A  L  L  *  T  T  P  Q  L  L  L  L  M  K  I  V  T  I  L  A  S  L  L  L  L  L  L  R  H  R  *  I  G  I  G  I  G  G  L  A  I  S  L  K  L  N  K  L  R  A  M  P  L  C  *  S :   F  N  L  K  K  L  *  K  R  K  T  L  K  K  L  Q  N  *  K  H  L  L  Q  K  L  H  R  R  T  Q  L  L  K  L  C  P  C  *  R :   M  Q  *  M  K  S  V  I  M  M  L  Q  D  C  A  E  V  R  E  V  A  W :   L  V  G  G  L  G  I  Q  K  I  Q  M  I  H  L  V  D  *  Y  V  L  L  Q  V  W  A  D  L  L  A  E  V  L  L  Q   : N  S  W  S  K  P  L  L  E  L  H  F  L  R  F  L  L  S  K  M  E  I  T  L  T  T  C  R :   W  C  C  C  S  E  P  K  E  V  Q  Q  V  Q  A  H  H  P  S  *  S  Q  *  R  D  L  H  L  L  K  L  R  T  E  L  *  L  M  L  K  *  M  K  Q  K  Q  K  Q  K  K  A  M  R  R  A  *  I  L  R  E  L  L  K  R  E  *  E  V  *  *  I  F  L  K  I  K  Y  L  I  *  K  *  K  *  *  K  S  I  L  L  K  K  *  Q  M  M  V  I  Q  *  S  N  F  W  K  K  K  M  T  T  L  F  P  V  R  R  Q  M  K  Q  L  L  I  W  I  T  *  I  P  T  E  L  Q  *  E  E  I  A  A  Q  V  K  K  E  K  L  *  I  P  S  F  L  *  G  V  Y  Y  I  I  K  K  T  I  H  *  R  M  S  L  F  V  S  L  L  R  S  K  M  W  Q  R  I  P  L  C  F  T  S  P  R  D  L  E  N  T  M  L  K  K  I  L  R  Q  A  L  M  R  Q  L  L  Q  L  R  V  S  L  N  *  C  L  L  M  W  P  R  H  F  G  V  L  I  K  L  L  Q  K :   F  L  E  M  L  R  R  C  *  S  L  Q  L  L  R  H  R  S  D  T  N  Y  L  N  T  Q  V  L  V  E  *  P  L  L  G  I  *  I  L  L  K  :  V  Y  M  L  V  H  L  D  L  M  E  L  R  *  C  N  *  G  G  S  M  V  T  G  M  *  M  M  L  K  N  P  L  M  W  S  S  L  S  M  L  R  R  *  S  *  Q  G  I  S  M  C  L  L  A  R :   *  H  F  E  L  K  *  V  K  E  V  A  C  P  T  G  G  C  I  Q  M  N  L  V  C :   L  L  V  T  R  V  K  E  E  *  L  N  M  V  S  K  T  Q  G  G  L  R  E  S  F  Y  N  S  M  E  R :   E  W  G  H  T  S  K  V  Q  T  L  A  F  F  M  S  F  R  S  T  A  F  L  Y  S  S  I  A  *  N  Y  Q  S  K  D  T  S  *  L  Y  D  F  G  P  S  C  V  V  R  L  G  E  D  H  I  P  S  S  N  R  F  F  P  F  C  Q  I  T  F  P  V  F  L  S  E  R  N  Q  P  S  M  *  S  K  K  P  T  L  S  P  P  F  L  P  L  *  V  F  C  C  P  I  I  *  Y  I  L  S  V  F  I  I  N  T  K  N  S  Y  L  V  M  H  F  F  L  L  R  D  D  V  D  N  S  I  L  A  E  L  K  F  I  Y  I  N  E  F  L  F  S  T  V  V  E  </second_frame>
            <third_frame>   T  P  F  P  K  T  P  *  K  I  S  S  K  K  K  K  K  S  K  Y  G  D  G  Q  R  L  G  C  G  G  T  R  H  R  P  S  F  A  I  F  F  I  T  F  F  Y  L  F  R  *  F  S  K  *  I  I  S  *  K  P  Q  K  L  Q  A  L  L  P  M  R  Y  C  K  Q  H  R  N  S  F  C  *  *  K  L  *  Q  Y  L  L  R  F  F  F  F  F  F  D  I  V  R  L  G  L  E  S  V  D  S  L  F  L  *  N  *  T  S  *  E  L  C  L  C  V  K   : V  S  T  *  R  S  Y  R  K  G  R  L  *  R  S  C  K  I  E  S  I  Y  C  R  S  Y  I  E  G  L  S  C  *  N  Y  V  H  V  E   : E  C  N  R  *  R  A  L  S  *  C  F  K  I  V  P  K  Y  G  K  W  L   : G  W  L  V  G  W  V  F  K  R  F  R  *  S  I  W  *  T  N  T  Y  Y  S  R  C  G  Q  I  Y  W  Q  K  F  Y  S  K  :  T  V  G  Q  S  L  S  W  N  S  T  F  *  D  F  C  C  Q  R  W  K  *  H  L  Q  H  A   : G  G  V  V  A  A  S  Q  R  K  C  S  K  F  K  P  I  I  Q  V  E  A  N  E  G  T  F  I  C  *  N  *  E  Q  S  C  N  *  C  *  S  R  *  S  R  S  R  S  R  K  K  Q  *  E  E  H  R  F  *  G  S  C  *  R  G  N  K  K  C  D  K  F  S  *  R  *  N  T  *  S  E  S  E  S  N  E  S  Q  Y  Y  *  R  N  D  R  *  W  *  F  S  E  A  I  S  G  R  R  R  *  Q  H  Y  F  Q  *  G  D  R  *  N  N  Y  *  F  G  *  H  E  F  R  P  S  Y  S  R  R  R  *  R  H  K  *  R  R  K  N  C  R  Y  Q  A  F  C  R  G  C  I  T  *  *  R  R  Q  S  I  K  G  *  V  C  S  F  P  C  *  D  Q  R  C  G  K  G  F  L  C  A  S  H  P  Q  E  T  W  R  T  R  C  *  R  K  Y  C  V  K  H  *  *  G  S  Y  C  S  S  E  Y  L  *  T  N  A  S  *  C  G  Q  G  I  L  E  F  *  *  S  F  F  K   : S  F  *  R  C  *  G  D  A  K  A  C  S  Y  S  G  T  E  A  I  Q  I  I  *  I  H  K  F  *  S  N  N  L  S  W  G  F  R  S  F  *  R :   S  I  C  W  C  I  W  T  L  W  N  *  G  S  A  I  K  A  E  V  W  *  L  E  C  K  *  C  *  K  I  L  *  C  G  V  L  *  V  C  *  G  G  K  A  N  R  G  Y  Q  C  A  C  W  R   : G  D  I  S  S  *  N  K  *  R  K  S  L  V  Q  Q  G  D  V  S  R  *  T  W  C   : A  C  W  L  Q  G  S  R  K  N  S  *  I  W  F  Q  K  P  K  V  G  *  G  R  A  S  T  T  Q  W  K   : G  N  G  A  T  P  Q  R  C  R  P  W  L  S  L  C  H  S  G  A  Q  L  S  C  T  L  Q  S  L  E  T  T  R  V  K  I  Q  V  D  C  M  T  L  D  P  V  V  W  L  G  *  E  K  I  I  F  L  L  P  T  D  F  F  P  F  A  R  *  P  F  Q  C  F  Y  Q  R  G  I  N  L  Q  C  D  R  K  S  Q  P  F  P  L  P  F  C  H  C  E  C  F  A  V  Q  *  Y  D  T  S  F  Q  F  S  S  *  T  L  K  T  H  I  L  *  C  I  F  F  C  *  E  M  M  W  I  I  V  F  *  L  S  *  N  S  Y  I  L  M  S  S  S  S  L  R  S  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0197N20.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15432" stop="15806"/>
                    <exon start="18438" stop="18554"/>
                    <exon start="18680" stop="18745"/>
                    <exon start="18993" stop="19099"/>
                    <exon start="19174" stop="19255"/>
                    <exon start="19731" stop="20438"/>
                    <exon start="20752" stop="20875"/>
                    <exon start="21126" stop="21292"/>
                    <exon start="21365" stop="21439"/>
                    <exon start="22805" stop="22897"/>
                    <exon start="23021" stop="23122"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2013</number_coding_nucleotides>
                  <number_encoded_amino_acids>671</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KHHFQRLHRRSLRRRRRRVNMAMANAWAAAGHVTVRPSLSSSSPSSTYFVNFPNKSFLKNPKNSRLCCRCVTVNNTATPSADENCNNTCFASSSSSSTSLDWDWNRWTRYFSEIEQVESYASVLKFQLEEAIEKEDFEEAAKLKASIAEATSKDSVAEIMSMLKNAIDEERYHDASRLCRSTGSGLVGWWVGYSKDSDDPFGRLIRITPGVGRFIGRSFTPKQLVKASPGTPLFEIFVVKDGNNTYNMQVVLLQRAKGSAASSSPSSKLKPMKGPSSAEIENRAVIDVKVDEAEAEAEKSNEKSIDFEGAAEEGIRSVINFLKDKIPDLKVKVMKVNITEEMTDDGDSVKQFLEEEDDNTISSEETDETTTDLDNMNSDRVTVGGDSGTSEEGKTVDTKLFVGGVLHNKEDNPLKDEFVRFPVEIKDVAKDSFVLHIPKRPGEHDAEENTASSINEAAIAAQSISELMPPDVAKAFWSSDKASSKVSRDVKEMLKLAVTQAQKRYKLSEYTSFSRITSPGDLDPFEGLYVGAFGPYGTEVVQLRRKYGNWNVNDAEKSSNVEFFEYVEAVKLTGDINVPAGEVTFRAKISKGSRLSNRGMYPDELGVLAGYKGQGRIAEYGFKNPRWVEGELLQLNGKGMGPHLKGADLGFLYVIPEHSFLVLFNRLKLPE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0197N20.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23168" stop="23365"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ARRRSYSFFQQIFSLLPDNLSSVFIREESTFNVIEKANPFPSLFATVSVLLSNNMIHPFSFHHKH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="25790" PGL_stop="26725"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25790" e_stop="26725"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25790" e_stop="26725" e_length="936"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25790" stop="26725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324574" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGTTCAAAAATCTCTCAATAAAGATCAGATTTTTCAAGAATCCCACCATGAAAAATCCAAACCCAGAACCCAATTTCAGTTTAAATCATCGAAATCTTCATAAACAGAGTAGTAGTCATTTATCAATGTCGGATACAGAGTCACAGGTCAGTCAAATTGATTCTTTCCATTCACCACTTCGATCCGAGTCGCCATTACGTTCTGATGATCCTTTCCCTGAACCCCAAAACTCCAAATCACCTTCAAAGGCAATCGTTGCAGTAGACAAGTACTTTTCCCCAATCAGATCATCGCATAAACTTTCGTCGGAAAATTTGAGTTCGCCGGCGACTCCACCGCCGGCGGTGGAAAGGAGGTCGCCGCTGGTTTATGTAAGTAGGGCGGTTAGGGAGGATATGGCACCTGGGGTGACGAAGGTGGGTCCGGTACGTGGTGGTGGTGCTGACGTGGAAGGGGGAGAAGTTGGAGGTGAGAAGCGGTCGAGGGCGGCTGTTGAGTCGATTCTTGAAAGGTCGCAAAGGGATGTTATGATGAACAGGGTGGCGTTAGGGTTTAGGGTTTGTGAGGTCATTTTTTGCTTGATTTCGTTTTCGGTTATGGCAGCTGATAAAACTCAAGGTTGGACTGGTGATTCATTTGATCGTTACAAAGAATACAGGTGACCATTTTCTGCTTACATCTATACCTCTGTTTATGTTGGTATTTTTGTTTCAATGGTAAAGAAAGCATTTTTAAGTGGAGAAATAAATTTTGCACAGAAGCAGTAGTCTGTGCACCACAGCCGATAGATTTTAGCTGAAATGTGAATATTTTGTTTCCTTTTATCAGAAGCAAATACAGTCAAACCTCTTAATTACAACATGGTTGTTATAAAGAACATACTATAATATAGCATACTTCTTTCCATTGATAGTCTTACTTTTCTTTTTAGTCG</gDNA_template>
            <first_frame> V  V  Q  K  S  L  N  K  D  Q  I  F  Q  E  S  H  H  E  K  S  K  P  R  T  Q  F  Q  F  K  S  S  K  S  S  *  T  E  *  *  S  F  I  N  V  G  Y  R  V  T  G  Q  S  N  *  F  F  P  F  T  T  S  I  R  V  A  I  T  F  *  *  S  F  P  *  T  P  K  L  Q  I  T  F  K  G  N  R  C  S  R  Q  V  L  F  P  N  Q  I  I  A  *  T  F  V  G  K  F  E  F  A  G  D  S  T  A  G  G  G  K  E  V  A  A  G  L  C  K  *  G  G  *  G  G  Y  G  T  W  G  D  E  G  G  S  G  T  W  W  W  C  *  R  G  R  G  R  S  W  R  *  E  A  V  E  G  G  C  *  V  D  S  *  K  V  A  K  G  C  Y  D  E  Q  G  G  V  R  V  *  G  L  *  G  H  F  L  L  D  F  V  F  G  Y  G  S  *  *  N  S  R  L  D  W  *  F  I  *  S  L  Q  R  I  Q  V  T  I  F  C  L  H  L  Y  L  C  L  C  W  Y  F  C  F  N  G  K  E  S  I  F  K  W  R  N  K  F  C  T  E  A  V  V  C  A  P  Q  P  I  D  F  S  *  N  V  N  I  L  F  P  F  I  R  S  K  Y  S  Q  T  S  *  L  Q  H  G  C  Y  K  E  H  T  I  I  *  H  T  S  F  H  *  *  S  Y  F  S  F  *  S </first_frame>
            <second_frame>  L  F  K  N  L  S  I  K  I  R  F  F  K  N  P  T  M  K  N  P  N  P  E  P  N  F  S  L  N  H  R  N  L  H  K  Q  S  S  S  H  L  S  M  S  D  T  E  S  Q  V  S  Q  I  D  S  F  H  S  P  L  R  S  E  S  P  L  R  S  D  D  P  F  P  E  P  Q  N  S  K  S  P  S  K  A  I  V  A  V  D  K  Y  F  S  P  I  R  S  S  H  K  L  S  S  E  N  L  S  S  P  A  T  P  P  P  A  V  E  R  R  S  P  L  V  Y  V  S  R  A  V  R  E  D  M  A  P  G  V  T  K  V  G  P  V  R  G  G  G  A  D  V  E  G  G  E  V  G  G  E  K  R  S  R  A  A  V  E  S  I  L  E  R  S  Q  R  D  V  M  M  N  R  V  A  L  G  F  R  V  C  E  V  I  F  C  L  I  S  F  S  V  M  A  A  D  K  T  Q  G  W  T  G  D  S  F  D  R  Y  K  E  Y  R  *  P  F  S  A  Y  I  Y  T  S  V  Y  V  G  I  F  V  S  M  V  K  K  A  F  L  S  G  E  I  N  F  A  Q  K  Q  *  S  V  H  H  S  R  *  I  L  A  E  M  *  I  F  C  F  L  L  S  E  A  N  T  V  K  P  L  N  Y  N  M  V  V  I  K  N  I  L  *  Y  S  I  L  L  S  I  D  S  L  T  F  L  F  S   </second_frame>
            <third_frame>   C  S  K  I  S  Q  *  R  S  D  F  S  R  I  P  P  *  K  I  Q  T  Q  N  P  I  S  V  *  I  I  E  I  F  I  N  R  V  V  V  I  Y  Q  C  R  I  Q  S  H  R  S  V  K  L  I  L  S  I  H  H  F  D  P  S  R  H  Y  V  L  M  I  L  S  L  N  P  K  T  P  N  H  L  Q  R  Q  S  L  Q  *  T  S  T  F  P  Q  S  D  H  R  I  N  F  R  R  K  I  *  V  R  R  R  L  H  R  R  R  W  K  G  G  R  R  W  F  M  *  V  G  R  L  G  R  I  W  H  L  G  *  R  R  W  V  R  Y  V  V  V  V  L  T  W  K  G  E  K  L  E  V  R  S  G  R  G  R  L  L  S  R  F  L  K  G  R  K  G  M  L  *  *  T  G  W  R  *  G  L  G  F  V  R  S  F  F  A  *  F  R  F  R  L  W  Q  L  I  K  L  K  V  G  L  V  I  H  L  I  V  T  K  N  T  G  D  H  F  L  L  T  S  I  P  L  F  M  L  V  F  L  F  Q  W  *  R  K  H  F  *  V  E  K  *  I  L  H  R  S  S  S  L  C  T  T  A  D  R  F  *  L  K  C  E  Y  F  V  S  F  Y  Q  K  Q  I  Q  S  N  L  L  I  T  T  W  L  L  *  R  T  Y  Y  N  I  A  Y  F  F  P  L  I  V  L  L  F  F  L  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0197N20.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25791" stop="26453"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFKNLSIKIRFFKNPTMKNPNPEPNFSLNHRNLHKQSSSHLSMSDTESQVSQIDSFHSPLRSESPLRSDDPFPEPQNSKSPSKAIVAVDKYFSPIRSSHKLSSENLSSPATPPPAVERRSPLVYVSRAVREDMAPGVTKVGPVRGGGADVEGGEVGGEKRSRAAVESILERSQRDVMMNRVALGFRVCEVIFCLISFSVMAADKTQGWTGDSFDRYKEYR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="30163" PGL_stop="28686"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30163" e_stop="30068"/>
            <exon e_start="29157" e_stop="28686"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.940" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30163" e_stop="30068" e_length="96"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.940">
            <gDNA_intron_boundary i_start="30067" i_stop="29158" i_length="910"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29157" e_stop="28686" e_length="472"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30163" stop="30068"/>
              <exon start="29157" stop="28686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323985" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGCTTTTGCCATAAAAACACGATTGACATGGGTTTCATATGCTCTGTTTGTTTATCAATATTCTGCAAGCATCACAAGAAATGCTCAACTTGCGG : ATCAAATTTTGGGGAGGCACGAAAGCAGGATCCCTCAGCCTCGGATCAGAGGAGGACTTCATATGGTAGTTGAATAGATAATCCTAAAGCCTATTTAACACCTCAGGCCATTGCCACTACTGTGTTTCAATAGATTTCTTATGATATGAACTTCCAGATGGTTATATTAAAGACGAGTCCAAACTGGACTAATGATACTAGACTATGTTTCAGCAGCAGGAAGAGGAAATTAAGGAAAGAGGGAGCTTGACCTTTTTCCAGTGTCAAGAATCTCCTTCTCTAGGTGAAGGAATACATAGGATGATTCTAATGAACTTGTCTGTATTTTATGAACTTCCAATATAAAAATGTTATTGTCCAAGTGAAAATTTGAGTAGAATTCCAAAACAAGTTAAAAGGTACAAACTGCAAATACATCAAACTGTTACCTGAACTCAAGATTTGATTATGTCTCTTAATGAAAATGTTTCAC</gDNA_template>
            <first_frame> V  L  L  P  *  K  H  D  *  H  G  F  H  M  L  C  L  F  I  N  I  L  Q  A  S  Q  E  M  L  N  L  R  :  I  K  F  W  G  G  T  K  A  G  S  L  S  L  G  S  E  E  D  F  I  W  *  L  N  R  *  S  *  S  L  F  N  T  S  G  H  C  H  Y  C  V  S  I  D  F  L  *  Y  E  L  P  D  G  Y  I  K  D  E  S  K  L  D  *  *  Y  *  T  M  F  Q  Q  Q  E  E  E  I  K  E  R  G  S  L  T  F  F  Q  C  Q  E  S  P  S  L  G  E  G  I  H  R  M  I  L  M  N  L  S  V  F  Y  E  L  P  I  *  K  C  Y  C  P  S  E  N  L  S  R  I  P  K  Q  V  K  R  Y  K  L  Q  I  H  Q  T  V  T  *  T  Q  D  L  I  M  S  L  N  E  N  V  S  </first_frame>
            <second_frame>  C  F  C  H  K  N  T  I  D  M  G  F  I  C  S  V  C  L  S  I  F  C  K  H  H  K  K  C  S  T  C  G :   S  N  F  G  E  A  R  K  Q  D  P  S  A  S  D  Q  R  R  T  S  Y  G  S  *  I  D  N  P  K  A  Y  L  T  P  Q  A  I  A  T  T  V  F  Q  *  I  S  Y  D  M  N  F  Q  M  V  I  L  K  T  S  P  N  W  T  N  D  T  R  L  C  F  S  S  R  K  R  K  L  R  K  E  G  A  *  P  F  S  S  V  K  N  L  L  L  *  V  K  E  Y  I  G  *  F  *  *  T  C  L  Y  F  M  N  F  Q  Y  K  N  V  I  V  Q  V  K  I  *  V  E  F  Q  N  K  L  K  G  T  N  C  K  Y  I  K  L  L  P  E  L  K  I  *  L  C  L  L  M  K  M  F  H </second_frame>
            <third_frame>   A  F  A  I  K  T  R  L  T  W  V  S  Y  A  L  F  V  Y  Q  Y  S  A  S  I  T  R  N  A  Q  L  A   : D  Q  I  L  G  R  H  E  S  R  I  P  Q  P  R  I  R  G  G  L  H  M  V  V  E  *  I  I  L  K  P  I  *  H  L  R  P  L  P  L  L  C  F  N  R  F  L  M  I  *  T  S  R  W  L  Y  *  R  R  V  Q  T  G  L  M  I  L  D  Y  V  S  A  A  G  R  G  N  *  G  K  R  E  L  D  L  F  P  V  S  R  I  S  F  S  R  *  R  N  T  *  D  D  S  N  E  L  V  C  I  L  *  T  S  N  I  K  M  L  L  S  K  *  K  F  E  *  N  S  K  T  S  *  K  V  Q  T  A  N  T  S  N  C  Y  L  N  S  R  F  D  Y  V  S  *  *  K  C  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0197N20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="34108" PGL_stop="30924"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34108" e_stop="34036"/>
            <exon e_start="33932" e_stop="33835"/>
            <exon e_start="33725" e_stop="33482"/>
            <exon e_start="33127" e_stop="33081"/>
            <exon e_start="32350" e_stop="32313"/>
            <exon e_start="32237" e_stop="32192"/>
            <exon e_start="32030" e_stop="31977"/>
            <exon e_start="31872" e_stop="31804"/>
            <exon e_start="30970" e_stop="30924"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.741" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.288" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.708" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.757" acc_prob="0.225" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34108" e_stop="34036" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.741">
            <gDNA_intron_boundary i_start="34035" i_stop="33933" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33932" e_stop="33835" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.956">
            <gDNA_intron_boundary i_start="33834" i_stop="33726" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33725" e_stop="33482" e_length="244"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.288">
            <gDNA_intron_boundary i_start="33481" i_stop="33128" i_length="354"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33127" e_stop="33081" e_length="47"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33080" i_stop="32351" i_length="730"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32350" e_stop="32313" e_length="38"/>
          </exon>
          <intron i_serial="5" don_prob="0.708" acc_prob="0.998">
            <gDNA_intron_boundary i_start="32312" i_stop="32238" i_length="75"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32237" e_stop="32192" e_length="46"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.994">
            <gDNA_intron_boundary i_start="32191" i_stop="32031" i_length="161"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="32030" e_stop="31977" e_length="54"/>
          </exon>
          <intron i_serial="7" don_prob="0.929" acc_prob="0.972">
            <gDNA_intron_boundary i_start="31976" i_stop="31873" i_length="104"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="31872" e_stop="31804" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.757" acc_prob="0.225">
            <gDNA_intron_boundary i_start="31803" i_stop="30971" i_length="833"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="30970" e_stop="30924" e_length="47"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34108" stop="34036"/>
              <exon start="33932" stop="33835"/>
              <exon start="33725" stop="33482"/>
              <exon start="33127" stop="33081"/>
              <exon start="32350" stop="32313"/>
              <exon start="32237" stop="32192"/>
              <exon start="32030" stop="31977"/>
              <exon start="31872" stop="31804"/>
              <exon start="30970" stop="30924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326344" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACACCTGACCGGTGAATTAAGGTTTATTCCACCGGCGGCCATGACACCGGTTTCATCAAAGCTTTACGCAG : ACGATGTGAGCCTATTGATGGTTCTGGTTGATACAAATCCCTACTTCTGGAGCTCAATGAAGAACACTGCCTTCACATTCCCTAAATTCATATCACAC : GTTCTTGCTTTCTTGAATTCGATACTTTTACTGAATCAGATGAACCAAGTAGTTGTGATTGCAACTGGGTACAATTCATGTGATTATGTATTCGATTCGTCTACCTCGTCAATGCAAAGAGCTGAGTGTTTGTTGGAGAAACTGGAGGATTTTGTGGATAAAGATGAGTCCTTGAGTCAAGAAGACTCTGTTGATGGAGTTGGGTTTTCGCTGCTTTCTGGTGCACTTTCTATGGCTTTGTGCT : ACATTCAACGGGTATTTCGTTCAGGGCCTCTTCATCCACAACCTCGG : ATATTGTGTCTGCATGGATCTCCAGATGGGCCGGGACA : ATATGTTGCAGTCATGAATTCAATTTTCTCAGCTCAACGTTCAATG : GTACCCATTGATTCATGTGTAATAGGATCTCAGCATTCTGCTTTTCTTCAGCAG : GCTTCTTACATAACTGGTGGTGTATATTTGAAACCCCAAGTATCAGATGGACTGTTTCAATATCTCTCT : ACAGTTTTTGCGACTGATTTACATTCTCGGAGCTTCTTGCAACTTCC</gDNA_template>
            <first_frame> L  H  L  T  G  E  L  R  F  I  P  P  A  A  M  T  P  V  S  S  K  L  Y  A   : D  D  V  S  L  L  M  V  L  V  D  T  N  P  Y  F  W  S  S  M  K  N  T  A  F  T  F  P  K  F  I  S  H  :  V  L  A  F  L  N  S  I  L  L  L  N  Q  M  N  Q  V  V  V  I  A  T  G  Y  N  S  C  D  Y  V  F  D  S  S  T  S  S  M  Q  R  A  E  C  L  L  E  K  L  E  D  F  V  D  K  D  E  S  L  S  Q  E  D  S  V  D  G  V  G  F  S  L  L  S  G  A  L  S  M  A  L  C   : Y  I  Q  R  V  F  R  S  G  P  L  H  P  Q  P  R  :  I  L  C  L  H  G  S  P  D  G  P  G  Q :   Y  V  A  V  M  N  S  I  F  S  A  Q  R  S  M  :  V  P  I  D  S  C  V  I  G  S  Q  H  S  A  F  L  Q  Q  :  A  S  Y  I  T  G  G  V  Y  L  K  P  Q  V  S  D  G  L  F  Q  Y  L  S  :  T  V  F  A  T  D  L  H  S  R  S  F  L  Q  L   </first_frame>
            <second_frame>  Y  T  *  P  V  N  *  G  L  F  H  R  R  P  *  H  R  F  H  Q  S  F  T  Q  :  T  M  *  A  Y  *  W  F  W  L  I  Q  I  P  T  S  G  A  Q  *  R  T  L  P  S  H  S  L  N  S  Y  H  T :   F  L  L  S  *  I  R  Y  F  Y  *  I  R  *  T  K  *  L  *  L  Q  L  G  T  I  H  V  I  M  Y  S  I  R  L  P  R  Q  C  K  E  L  S  V  C  W  R  N  W  R  I  L  W  I  K  M  S  P  *  V  K  K  T  L  L  M  E  L  G  F  R  C  F  L  V  H  F  L  W  L  C  A  :  T  F  N  G  Y  F  V  Q  G  L  F  I  H  N  L  G :   Y  C  V  C  M  D  L  Q  M  G  R  D   : N  M  L  Q  S  *  I  Q  F  S  Q  L  N  V  Q  W :   Y  P  L  I  H  V  *  *  D  L  S  I  L  L  F  F  S  R :   L  L  T  *  L  V  V  Y  I  *  N  P  K  Y  Q  M  D  C  F  N  I  S  L :   Q  F  L  R  L  I  Y  I  L  G  A  S  C  N  F  </second_frame>
            <third_frame>   T  P  D  R  *  I  K  V  Y  S  T  G  G  H  D  T  G  F  I  K  A  L  R  R :   R  C  E  P  I  D  G  S  G  *  Y  K  S  L  L  L  E  L  N  E  E  H  C  L  H  I  P  *  I  H  I  T   : R  S  C  F  L  E  F  D  T  F  T  E  S  D  E  P  S  S  C  D  C  N  W  V  Q  F  M  *  L  C  I  R  F  V  Y  L  V  N  A  K  S  *  V  F  V  G  E  T  G  G  F  C  G  *  R  *  V  L  E  S  R  R  L  C  *  W  S  W  V  F  A  A  F  W  C  T  F  Y  G  F  V  L :   H  S  T  G  I  S  F  R  A  S  S  S  T  T  S   : D  I  V  S  A  W  I  S  R  W  A  G  T  :  I  C  C  S  H  E  F  N  F  L  S  S  T  F  N   : G  T  H  *  F  M  C  N  R  I  S  A  F  C  F  S  S  A   : G  F  L  H  N  W  W  C  I  F  E  T  P  S  I  R  W  T  V  S  I  S  L   : Y  S  F  C  D  *  F  T  F  S  E  L  L  A  T  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0197N20.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34108" stop="34036"/>
                    <exon start="33932" stop="33835"/>
                    <exon start="33725" stop="33482"/>
                    <exon start="33127" stop="33081"/>
                    <exon start="32350" stop="32313"/>
                    <exon start="32237" stop="32192"/>
                    <exon start="32030" stop="31977"/>
                    <exon start="31872" stop="31804"/>
                    <exon start="30970" stop="30926"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHLTGELRFIPPAAMTPVSSKLYADDVSLLMVLVDTNPYFWSSMKNTAFTFPKFISHVLAFLNSILLLNQMNQVVVIATGYNSCDYVFDSSTSSMQRAECLLEKLEDFVDKDESLSQEDSVDGVGFSLLSGALSMALCYIQRVFRSGPLHPQPRILCLHGSPDGPGQYVAVMNSIFSAQRSMVPIDSCVIGSQHSAFLQQASYITGGVYLKPQVSDGLFQYLSTVFATDLHSRSFLQL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="38734" PGL_stop="39531"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38734" e_stop="38746"/>
            <exon e_start="38911" e_stop="39001"/>
            <exon e_start="39116" e_stop="39531"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.880" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38734" e_stop="38746" e_length="13"/>
          </exon>
          <intron i_serial="1" don_prob="0.880" acc_prob="0.997">
            <gDNA_intron_boundary i_start="38747" i_stop="38910" i_length="164"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38911" e_stop="39001" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.958" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39002" i_stop="39115" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="39116" e_stop="39531" e_length="416"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38734" stop="38746"/>
              <exon start="38911" stop="39001"/>
              <exon start="39116" stop="39531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342702" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTGTCACGGAT : GCTGCTGAGCTCACCAACATGTCCAGTTCTTGAAGGTCTTGGAAAGAAGCTAGCTTTTGAGATAGCTGTTGGTTTAAACGGCCGTGTGTGG : GTAAATGCTGAGCACCAATCGTCAATCATCCTTGCTGCGAATGCAATAATGAACTCTGAGTCCTTGACCTCAGTGCAACAAAAGATTATGGTGGAGAAGCTGCTTGACAGAGTAAATTGAACTGGATTTAGCATTTCGACCACATAGCCTCTAGCAGCCAAATGATGTGATGGATAATGTGATTGTAACCAGACCGCGGAACATAAATGTTACACAAGCTTCTTCCTCATGGACTTTTAGCCTGCGGCTTTCCAGTTCATCACTCATGAAACCGTCCTGCTTGTTTATGTGATTCTTGTGAGAGTATAGAGAAAAGATGTAACATTATTAGCAGAATTGATTGTCCATGCAAACATTTTGTCCATGGTGTTGTATTTATTCTTCAAATCAATCTTCTGTCCCTCTAAACAGATTTA</gDNA_template>
            <first_frame> V  C  H  G   : C  C  *  A  H  Q  H  V  Q  F  L  K  V  L  E  R  S  *  L  L  R  *  L  L  V  *  T  A  V  C  G :   *  M  L  S  T  N  R  Q  S  S  L  L  R  M  Q  *  *  T  L  S  P  *  P  Q  C  N  K  R  L  W  W  R  S  C  L  T  E  *  I  E  L  D  L  A  F  R  P  H  S  L  *  Q  P  N  D  V  M  D  N  V  I  V  T  R  P  R  N  I  N  V  T  Q  A  S  S  S  W  T  F  S  L  R  L  S  S  S  S  L  M  K  P  S  C  L  F  M  *  F  L  *  E  Y  R  E  K  M  *  H  Y  *  Q  N  *  L  S  M  Q  T  F  C  P  W  C  C  I  Y  S  S  N  Q  S  S  V  P  L  N  R  F  </first_frame>
            <second_frame>  F  V  T  D  :  A  A  E  L  T  N  M  S  S  S  *  R  S  W  K  E  A  S  F  *  D  S  C  W  F  K  R  P  C  V   : G  K  C  *  A  P  I  V  N  H  P  C  C  E  C  N  N  E  L  *  V  L  D  L  S  A  T  K  D  Y  G  G  E  A  A  *  Q  S  K  L  N  W  I  *  H  F  D  H  I  A  S  S  S  Q  M  M  *  W  I  M  *  L  *  P  D  R  G  T  *  M  L  H  K  L  L  P  H  G  L  L  A  C  G  F  P  V  H  H  S  *  N  R  P  A  C  L  C  D  S  C  E  S  I  E  K  R  C  N  I  I  S  R  I  D  C  P  C  K  H  F  V  H  G  V  V  F  I  L  Q  I  N  L  L  S  L  *  T  D  L </second_frame>
            <third_frame>   L  S  R  M :   L  L  S  S  P  T  C  P  V  L  E  G  L  G  K  K  L  A  F  E  I  A  V  G  L  N  G  R  V  W  :  V  N  A  E  H  Q  S  S  I  I  L  A  A  N  A  I  M  N  S  E  S  L  T  S  V  Q  Q  K  I  M  V  E  K  L  L  D  R  V  N  *  T  G  F  S  I  S  T  T  *  P  L  A  A  K  *  C  D  G  *  C  D  C  N  Q  T  A  E  H  K  C  Y  T  S  F  F  L  M  D  F  *  P  A  A  F  Q  F  I  T  H  E  T  V  L  L  V  Y  V  I  L  V  R  V  *  R  K  D  V  T  L  L  A  E  L  I  V  H  A  N  I  L  S  M  V  L  Y  L  F  F  K  S  I  F  C  P  S  K  Q  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0197N20.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38736" stop="38746"/>
                    <exon start="38911" stop="39001"/>
                    <exon start="39116" stop="39235"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSRMLLSSPTCPVLEGLGKKLAFEIAVGLNGRVWVNAEHQSSIILAANAIMNSESLTSVQQKIMVEKLLDRVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="40041" PGL_stop="46733"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41559" e_stop="41724"/>
            <exon e_start="42348" e_stop="42411"/>
            <exon e_start="42712" e_stop="42801"/>
            <exon e_start="44022" e_stop="44095"/>
            <exon e_start="44189" e_stop="44231"/>
            <exon e_start="44329" e_stop="44396"/>
            <exon e_start="45280" e_stop="45324"/>
            <exon e_start="45412" e_stop="45477"/>
            <exon e_start="45922" e_stop="46733"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.362" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.727" acc_prob="0.000" e_score="0.989"/>
          <exon-intron don_prob="0.906" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.854" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41559" e_stop="41724" e_length="166"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.362">
            <gDNA_intron_boundary i_start="41725" i_stop="42347" i_length="623"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42348" e_stop="42411" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="42412" i_stop="42711" i_length="300"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="42712" e_stop="42801" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.727" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42802" i_stop="44021" i_length="1220"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44022" e_stop="44095" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.906" acc_prob="0.958">
            <gDNA_intron_boundary i_start="44096" i_stop="44188" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44189" e_stop="44231" e_length="43"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="44232" i_stop="44328" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="44329" e_stop="44396" e_length="68"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="44397" i_stop="45279" i_length="883"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="45280" e_stop="45324" e_length="45"/>
          </exon>
          <intron i_serial="7" don_prob="0.970" acc_prob="0.976">
            <gDNA_intron_boundary i_start="45325" i_stop="45411" i_length="87"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="45412" e_stop="45477" e_length="66"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.854">
            <gDNA_intron_boundary i_start="45478" i_stop="45921" i_length="444"/>
          </intron>
          <exon e_serial="9" e_score="0.990">
            <gDNA_exon_boundary e_start="45922" e_stop="46733" e_length="812"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41559" stop="41724"/>
              <exon start="42348" stop="42411"/>
              <exon start="42712" stop="42801"/>
              <exon start="44022" stop="44095"/>
              <exon start="44189" stop="44231"/>
              <exon start="44329" stop="44396"/>
              <exon start="45280" stop="45324"/>
              <exon start="45412" stop="45477"/>
              <exon start="45922" stop="46733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46088" stop="46434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335427" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAG : AAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATG : AGAAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAG : GGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGAAGAATTTCAGTTACTCAATCTAGG : CAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAG : TGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAG : ATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGA : GATATAAATGATCAGCCACCAAATCCTAACCAGCCTGTACCTGATCGTGTTGCAGCAAAGCCTAAG : CCTTGGGAAGTTGGCCAGAGTCAAAATAATTCCAATTTCCTTCAATCTCAAGGGAGTGGCGATGGCTTGAATTATGGTTACCAAGACAATCTGACGAATGGAGACAATTCAGCACCTTGGTGGCAACGCAAGAATGCCAGGATAACTGAAATCGAAGCTGAAGGTGAACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTCAGAGATCATGGGTTCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAGGCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATTCACTATTGAGGTTCATCACGATCTTACAGCTACACGTTCTTGATAAATCGAGCCTCATTTCGTGTTTACCCCCAAGTTACATTTATCAACTTTTTGGTATATGGTTGTCTATTCATTACACACTCTAAACTGGCTGCAGACTTAAGAATTGTATTTATATAATTCTACAGTTTGAATAAAGGTTAGATTATGTGAATAACATAATTCATGTTCAGTAATTTGGTGGATACAAAAAGTATTCTAATAAATCAAAGTGTGGCCTAGTGGTCAAATGTAGTCGGTTGAGAATACTTATTCGG</gDNA_template>
            <first_frame> I  D  *  Y  I  T  G  C  F  T  K  S  A  A  S  V  S  S  E  Q  *  H  E  K  N  G  V  S  L  S  F  P  L  D  S  C  S  Y  C  C  R  S  T  R  C  F  R  S  W  N  S  C  T  F  Q   : E  I  Y  Y  S  P  V  E  V  L  D  T  Q  G  C  N  G  *  R  R  R  * :   E  K  V  F  *  G  A  D  K  P  A  K  L  S  S  T  *  D  E  I  N  D  K  C  Y  R  E  T  G  R :   A  K  Y  Y  F  W  K  N  T  C  F  G  T  R  *  S  K  N  F  S  Y  S  I  *   : A  I  L  C  Q  W  K  S  K  W  *  C  T  F  S :   E  I  F  V  T  T  C  I  C  *  T  I  C  C  T  P  S  K  V  L  Y  G   : D  Y  G  Y  G  S  K  R  R  E  A  S  Q  H  P   : R  Y  K  *  S  A  T  K  S  *  P  A  C  T  *  S  C  C  S  K  A  *   : A  L  G  S  W  P  E  S  K  *  F  Q  F  P  S  I  S  R  E  W  R  W  L  E  L  W  L  P  R  Q  S  D  E  W  R  Q  F  S  T  L  V  A  T  Q  E  C  Q  D  N  *  N  R  S  *  R  *  T  K  L  W  I  S  S  C  T  S  S  G  T  T  N  S  E  I  M  G  S  S  P  A  S  S  S  R  N  G  R  G  S  C  S  H  P  P  T  *  K  V  C  I  S  E  R  T  V  D  *  *  S  V  V  S  S  F  I  R  *  V  A  E  G  Y  K  N  L  R  I  W  W  C  P  *  S  *  W  F  E  F  W  P  T  D  E  *  N  N  T  N  *  R  R  *  S  N  F  Q  Q  L  K  Y  H  L  I  S  L  I  *  N  A  G  H  S  L  L  R  F  I  T  I  L  Q  L  H  V  L  D  K  S  S  L  I  S  C  L  P  P  S  Y  I  Y  Q  L  F  G  I  W  L  S  I  H  Y  T  L  *  T  G  C  R  L  K  N  C  I  Y  I  I  L  Q  F  E  *  R  L  D  Y  V  N  N  I  I  H  V  Q  *  F  G  G  Y  K  K  Y  S  N  K  S  K  C  G  L  V  V  K  C  S  R  L  R  I  L  I  R </first_frame>
            <second_frame>  S  T  S  T  S  Q  A  A  L  Q  N  L  Q  P  A  S  A  P  S  N  S  M  K  K  M  G  Y  L  S  H  F  H  W  T  H  A  V  I  A  V  G  L  L  A  A  S  G  A  G  T  A  V  L  F  K  :  K  S  I  I  P  R  L  K  S  W  I  R  K  V  V  M  D  E  E  E  D   : E  K  R  Y  F  E  E  L  T  S  L  L  N  Y  Q  V  R  E  M  K  S  M  T  S  A  I  E  K  L  E   : G  Q  S  T  T  S  G  R  I  P  V  S  E  L  D  D  R  R  I  S  V  T  Q  S  R  :  Q  S  Y  A  N  G  K  V  N  G  D  A  H  S   : V  R  S  L  S  P  P  A  S  V  E  P  S  A  A  P  H  P  K  S  Y  M  E  :  I  M  A  M  V  Q  R  G  E  K  P  P  N  I  R  :  D  I  N  D  Q  P  P  N  P  N  Q  P  V  P  D  R  V  A  A  K  P  K  :  P  W  E  V  G  Q  S  Q  N  N  S  N  F  L  Q  S  Q  G  S  G  D  G  L  N  Y  G  Y  Q  D  N  L  T  N  G  D  N  S  A  P  W  W  Q  R  K  N  A  R  I  T  E  I  E  A  E  G  E  Q  N  F  G  S  P  A  A  P  V  Q  E  R  P  I  Q  R  S  W  V  P  P  Q  P  P  P  V  A  M  A  E  A  A  A  A  I  R  Q  P  K  K  S  A  S  Q  N  E  Q  L  T  D  D  Q  L  L  A  R  S  S  D  E  L  Q  R  V  T  R  I  S  E  S  G  G  A  P  E  A  N  G  S  S  S  G  L  Q  M  S  E  T  T  P  I  E  E  G  D  Q  T  F  S  S  *  N  I  I  *  F  P  *  Y  K  T  L  G  I  H  Y  *  G  S  S  R  S  Y  S  Y  T  F  L  I  N  R  A  S  F  R  V  Y  P  Q  V  T  F  I  N  F  L  V  Y  G  C  L  F  I  T  H  S  K  L  A  A  D  L  R  I  V  F  I  *  F  Y  S  L  N  K  G  *  I  M  *  I  T  *  F  M  F  S  N  L  V  D  T  K  S  I  L  I  N  Q  S  V  A  *  W  S  N  V  V  G  *  E  Y  L  F   </second_frame>
            <third_frame>   R  L  V  H  H  R  L  L  Y  K  I  C  S  Q  R  Q  L  R  A  I  A  *  K  K  W  G  I  S  L  I  S  I  G  L  M  Q  L  L  L  *  V  Y  S  L  L  Q  E  L  E  Q  L  Y  F  S  R :   N  L  L  F  P  G  *  S  L  G  Y  A  R  L  *  W  M  K  K  K  M  :  R  K  G  I  L  R  S  *  Q  A  C  *  T  I  K  Y  V  R  *  N  Q  *  Q  V  L  *  R  N  W  K  :  G  K  V  L  L  L  E  E  Y  L  F  R  N  *  M  I  E  E  F  Q  L  L  N  L  G :   N  L  M  P  M  E  K  *  M  V  M  H  I  Q  :  *  D  L  C  H  H  L  H  L  L  N  H  L  L  H  P  I  Q  S  L  I  W  R :   L  W  L  W  F  K  E  E  R  S  L  P  T  S  E :   I  *  M  I  S  H  Q  I  L  T  S  L  Y  L  I  V  L  Q  Q  S  L  S :   L  G  K  L  A  R  V  K  I  I  P  I  S  F  N  L  K  G  V  A  M  A  *  I  M  V  T  K  T  I  *  R  M  E  T  I  Q  H  L  G  G  N  A  R  M  P  G  *  L  K  S  K  L  K  V  N  K  T  L  D  L  Q  L  H  Q  F  R  N  D  Q  F  R  D  H  G  F  L  P  S  L  L  Q  S  Q  W  Q  R  Q  L  Q  P  S  A  N  L  K  S  L  H  L  R  T  N  S  *  L  M  I  S  C  *  L  V  H  Q  M  S  C  R  G  L  Q  E  S  P  N  L  V  V  P  L  K  L  M  V  R  V  L  A  Y  R  *  V  K  Q  H  Q  L  K  K  V  I  K  L  S  A  A  E  I  S  F  N  F  L  D  I  K  R  W  A  F  T  I  E  V  H  H  D  L  T  A  T  R  S  *  *  I  E  P  H  F  V  F  T  P  K  L  H  L  S  T  F  W  Y  M  V  V  Y  S  L  H  T  L  N  W  L  Q  T  *  E  L  Y  L  Y  N  S  T  V  *  I  K  V  R  L  C  E  *  H  N  S  C  S  V  I  W  W  I  Q  K  V  F  *  *  I  K  V  W  P  S  G  Q  M  *  S  V  E  N  T  Y  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0197N20.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41560" stop="41724"/>
                    <exon start="42348" stop="42411"/>
                    <exon start="42712" stop="42801"/>
                    <exon start="44022" stop="44095"/>
                    <exon start="44189" stop="44231"/>
                    <exon start="44329" stop="44396"/>
                    <exon start="45280" stop="45324"/>
                    <exon start="45412" stop="45477"/>
                    <exon start="45922" stop="46395"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1086</number_coding_nucleotides>
                  <number_encoded_amino_acids>362</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STSTSQAALQNLQPASAPSNSMKKMGYLSHFHWTHAVIAVGLLAASGAGTAVLFKKSIIPRLKSWIRKVVMDEEEDEKRYFEELTSLLNYQVREMKSMTSAIEKLEGQSTTSGRIPVSELDDRRISVTQSRQSYANGKVNGDAHSVRSLSPPASVEPSAAPHPKSYMEIMAMVQRGEKPPNIRDINDQPPNPNQPVPDRVAAKPKPWEVGQSQNNSNFLQSQGSGDGLNYGYQDNLTNGDNSAPWWQRKNARITEIEAEGEQNFGSPAAPVQERPIQRSWVPPQPPPVAMAEAAAAIRQPKKSASQNEQLTDDQLLARSSDELQRVTRISESGGAPEANGSSSGLQMSETTPIEEGDQTFSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="45495" e_stop="45970"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45495" e_stop="45970" e_length="476"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45495" stop="45970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335428" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCTTCTACCAACAATGTTGCAATTGGGTCAAATTTGAAGGTTGGATTGGGTCAATTTAAGAATTGTCTCTGCATGATTGACTTTTAAAAAGAACCTTAGCCACATTCTGGCAGCTAGACGTGAAAAATACGATTTACTAATCGAATCTATAATCCTATTTAAGTACTTCTTTTGATGAATTAATCACTGCAACTAGGATATTTCAGGAATATTGTATGGATTAAGTTCTATGAACACCTGTCACTTTGGTTTGGATACAAGAGTTATGGTTTACTAGATAGAACTTTCTATTCAATACATTCGGCTTTTTTTCTTGGATTGTCTGGACGAGAGGTGGGATTGGAGACGGGCCATATGCAGTTCACATGTAAGATTTACTCGAAGTGGCAATGATAACCATTTAATAATCTGTGCTTGTGAACAGCCTTGGGAAGTTGGCCAGAGTCAAAATAATTCCAATTTCCTTCAATCTC</gDNA_template>
            <first_frame> V  S  S  T  N  N  V  A  I  G  S  N  L  K  V  G  L  G  Q  F  K  N  C  L  C  M  I  D  F  *  K  E  P  *  P  H  S  G  S  *  T  *  K  I  R  F  T  N  R  I  Y  N  P  I  *  V  L  L  L  M  N  *  S  L  Q  L  G  Y  F  R  N  I  V  W  I  K  F  Y  E  H  L  S  L  W  F  G  Y  K  S  Y  G  L  L  D  R  T  F  Y  S  I  H  S  A  F  F  L  G  L  S  G  R  E  V  G  L  E  T  G  H  M  Q  F  T  C  K  I  Y  S  K  W  Q  *  *  P  F  N  N  L  C  L  *  T  A  L  G  S  W  P  E  S  K  *  F  Q  F  P  S  I   </first_frame>
            <second_frame>  F  L  L  P  T  M  L  Q  L  G  Q  I  *  R  L  D  W  V  N  L  R  I  V  S  A  *  L  T  F  K  K  N  L  S  H  I  L  A  A  R  R  E  K  Y  D  L  L  I  E  S  I  I  L  F  K  Y  F  F  *  *  I  N  H  C  N  *  D  I  S  G  I  L  Y  G  L  S  S  M  N  T  C  H  F  G  L  D  T  R  V  M  V  Y  *  I  E  L  S  I  Q  Y  I  R  L  F  F  L  D  C  L  D  E  R  W  D  W  R  R  A  I  C  S  S  H  V  R  F  T  R  S  G  N  D  N  H  L  I  I  C  A  C  E  Q  P  W  E  V  G  Q  S  Q  N  N  S  N  F  L  Q  S  </second_frame>
            <third_frame>   F  F  Y  Q  Q  C  C  N  W  V  K  F  E  G  W  I  G  S  I  *  E  L  S  L  H  D  *  L  L  K  R  T  L  A  T  F  W  Q  L  D  V  K  N  T  I  Y  *  S  N  L  *  S  Y  L  S  T  S  F  D  E  L  I  T  A  T  R  I  F  Q  E  Y  C  M  D  *  V  L  *  T  P  V  T  L  V  W  I  Q  E  L  W  F  T  R  *  N  F  L  F  N  T  F  G  F  F  S  W  I  V  W  T  R  G  G  I  G  D  G  P  Y  A  V  H  M  *  D  L  L  E  V  A  M  I  T  I  *  *  S  V  L  V  N  S  L  G  K  L  A  R  V  K  I  I  P  I  S  F  N  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0197N20.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45681" stop="45890"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLQLGYFRNIVWIKFYEHLSLWFGYKSYGLLDRTFYSIHSAFFLGLSGREVGLETGHMQFTCKIYSKWQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0197N20.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45775" stop="45969"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IELSIQYIRLFFLDCLDERWDWRRAICSSHVRFTRSGNDNHLIICACEQPWEVGQSQNNSNFLQS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="40041" e_stop="40105"/>
            <exon e_start="40222" e_stop="40299"/>
            <exon e_start="41047" e_stop="41282"/>
            <exon e_start="41385" e_stop="41433"/>
            <exon e_start="41540" e_stop="41724"/>
            <exon e_start="42348" e_stop="42537"/>
            <exon e_start="42712" e_stop="42801"/>
            <exon e_start="44022" e_stop="44095"/>
            <exon e_start="44189" e_stop="44231"/>
            <exon e_start="44329" e_stop="44396"/>
            <exon e_start="45280" e_stop="45324"/>
            <exon e_start="45412" e_stop="45477"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.930" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.469" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.362" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.727" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.906" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40041" e_stop="40105" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.930" acc_prob="0.996">
            <gDNA_intron_boundary i_start="40106" i_stop="40221" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40222" e_stop="40299" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.469">
            <gDNA_intron_boundary i_start="40300" i_stop="41046" i_length="747"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41047" e_stop="41282" e_length="236"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41283" i_stop="41384" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41385" e_stop="41433" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="41434" i_stop="41539" i_length="106"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41540" e_stop="41724" e_length="185"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.362">
            <gDNA_intron_boundary i_start="41725" i_stop="42347" i_length="623"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="42348" e_stop="42537" e_length="190"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.984">
            <gDNA_intron_boundary i_start="42538" i_stop="42711" i_length="174"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="42712" e_stop="42801" e_length="90"/>
          </exon>
          <intron i_serial="7" don_prob="0.727" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42802" i_stop="44021" i_length="1220"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="44022" e_stop="44095" e_length="74"/>
          </exon>
          <intron i_serial="8" don_prob="0.906" acc_prob="0.958">
            <gDNA_intron_boundary i_start="44096" i_stop="44188" i_length="93"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="44189" e_stop="44231" e_length="43"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="44232" i_stop="44328" i_length="97"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="44329" e_stop="44396" e_length="68"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="44397" i_stop="45279" i_length="883"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="45280" e_stop="45324" e_length="45"/>
          </exon>
          <intron i_serial="11" don_prob="0.970" acc_prob="0.976">
            <gDNA_intron_boundary i_start="45325" i_stop="45411" i_length="87"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="45412" e_stop="45477" e_length="66"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40041" stop="40105"/>
              <exon start="40222" stop="40299"/>
              <exon start="41047" stop="41282"/>
              <exon start="41385" stop="41433"/>
              <exon start="41540" stop="41724"/>
              <exon start="42348" stop="42537"/>
              <exon start="42712" stop="42801"/>
              <exon start="44022" stop="44095"/>
              <exon start="44189" stop="44231"/>
              <exon start="44329" stop="44396"/>
              <exon start="45280" stop="45324"/>
              <exon start="45412" stop="45477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315992" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGAGATGAGCAAAATCCACTTGTGGGTTCTGACATACTATCATCAATAATCAATTCGTCTTGAG : TTCAATAGGAGTTGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAG : CTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGGAGGAAATTGACGAGGCCTTTCGTCGAGTTCCT : GATCCTACCCCAACTGTTACTAGCACACAGCCAGTTGCTGCTAATGAAG : ATGGGACACAGAAGCCTTCATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAG : AAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATGAAAAAGGTATTGTCAAGGGAAAACCAAGTTTAGCAGAAGAAGCTGCTGTTGCTGCAAAAGCTGCAGCAGCTGCTGCTGCTGATGTTGCCCGAGCAAGCCAGGAGATGTTGGCATCAAAATCCGAAG : AGAAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAG : GGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGAAGAATTTCAGTTACTCAATCTAGG : CAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAG : TGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAG : ATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGA : GATATAAATGATCAGCCACCAAATCCTAACCAGCCTGTACCTGATCGTGTTGCAGCAAAGCCTAAG</gDNA_template>
            <first_frame> S  R  *  A  K  S  T  C  G  F  *  H  T  I  I  N  N  Q  F  V  L  S :   S  I  G  V  G  *  H  G  V  S  I  R  F  S  T  Q  L  R  K  R  E  Y  P  E  S  S :   F  A  T  S  S  *  K  S  S  R  S  Q  A  *  G  C  K  W  E  L  S  S  F  C  V  C  K  L  G  T  N  S  G  G  P  S  P  E  C  Y  E  I  S  F  T  S  K  S  *  G  I  S  S  H  V  *  A  F  F  S  *  E  E  G  A  Y  K  G  G  N  *  R  G  L  S  S  S  S   : *  S  Y  P  N  C  Y  *  H  T  A  S  C  C  *  *  R :   W  D  T  E  A  F  I  D  *  Y  I  T  G  C  F  T  K  S  A  A  S  V  S  S  E  Q  *  H  E  K  N  G  V  S  L  S  F  P  L  D  S  C  S  Y  C  C  R  S  T  R  C  F  R  S  W  N  S  C  T  F  Q   : E  I  Y  Y  S  P  V  E  V  L  D  T  Q  G  C  N  G  *  R  R  R  *  K  R  Y  C  Q  G  K  T  K  F  S  R  R  S  C  C  C  C  K  S  C  S  S  C  C  C  *  C  C  P  S  K  P  G  D  V  G  I  K  I  R  R :   E  K  V  F  *  G  A  D  K  P  A  K  L  S  S  T  *  D  E  I  N  D  K  C  Y  R  E  T  G  R :   A  K  Y  Y  F  W  K  N  T  C  F  G  T  R  *  S  K  N  F  S  Y  S  I  *   : A  I  L  C  Q  W  K  S  K  W  *  C  T  F  S :   E  I  F  V  T  T  C  I  C  *  T  I  C  C  T  P  S  K  V  L  Y  G   : D  Y  G  Y  G  S  K  R  R  E  A  S  Q  H  P   : R  Y  K  *  S  A  T  K  S  *  P  A  C  T  *  S  C  C  S  K  A  *  </first_frame>
            <second_frame>  R  D  E  Q  N  P  L  V  G  S  D  I  L  S  S  I  I  N  S  S  *   : V  Q  *  E  L  D  N  M  A  S  Q  S  D  S  P  P  N  S  V  N  E  N  T  Q  N  P   : A  S  Q  P  A  A  E  N  H  Q  G  P  K  P  E  A  A  S  G  S  S  P  A  S  V  F  V  N  S  E  P  I  R  E  D  Q  V  Q  N  A  M  K  F  L  S  H  P  K  V  R  G  S  P  V  M  Y  R  R  S  F  L  E  R  K  G  L  T  K  E  E  I  D  E  A  F  R  R  V  P  :  D  P  T  P  T  V  T  S  T  Q  P  V  A  A  N  E   : D  G  T  Q  K  P  S  S  T  S  T  S  Q  A  A  L  Q  N  L  Q  P  A  S  A  P  S  N  S  M  K  K  M  G  Y  L  S  H  F  H  W  T  H  A  V  I  A  V  G  L  L  A  A  S  G  A  G  T  A  V  L  F  K  :  K  S  I  I  P  R  L  K  S  W  I  R  K  V  V  M  D  E  E  E  D  E  K  G  I  V  K  G  K  P  S  L  A  E  E  A  A  V  A  A  K  A  A  A  A  A  A  A  D  V  A  R  A  S  Q  E  M  L  A  S  K  S  E   : E  K  R  Y  F  E  E  L  T  S  L  L  N  Y  Q  V  R  E  M  K  S  M  T  S  A  I  E  K  L  E   : G  Q  S  T  T  S  G  R  I  P  V  S  E  L  D  D  R  R  I  S  V  T  Q  S  R  :  Q  S  Y  A  N  G  K  V  N  G  D  A  H  S   : V  R  S  L  S  P  P  A  S  V  E  P  S  A  A  P  H  P  K  S  Y  M  E  :  I  M  A  M  V  Q  R  G  E  K  P  P  N  I  R  :  D  I  N  D  Q  P  P  N  P  N  Q  P  V  P  D  R  V  A  A  K  P  K </second_frame>
            <third_frame>   E  M  S  K  I  H  L  W  V  L  T  Y  Y  H  Q  *  S  I  R  L  E  :  F  N  R  S  W  I  T  W  R  L  N  Q  I  L  H  P  T  P  *  T  R  I  P  R  I  Q  :  L  R  N  Q  Q  L  K  I  I  K  V  P  S  L  R  L  Q  V  G  A  L  Q  L  L  C  L  *  T  R  N  Q  F  G  R  T  K  S  R  M  L  *  N  F  F  H  I  Q  K  L  G  D  L  Q  S  C  I  G  V  L  F  L  R  G  R  G  L  Q  R  R  K  L  T  R  P  F  V  E  F  L :   I  L  P  Q  L  L  L  A  H  S  Q  L  L  L  M  K  :  M  G  H  R  S  L  H  R  L  V  H  H  R  L  L  Y  K  I  C  S  Q  R  Q  L  R  A  I  A  *  K  K  W  G  I  S  L  I  S  I  G  L  M  Q  L  L  L  *  V  Y  S  L  L  Q  E  L  E  Q  L  Y  F  S  R :   N  L  L  F  P  G  *  S  L  G  Y  A  R  L  *  W  M  K  K  K  M  K  K  V  L  S  R  E  N  Q  V  *  Q  K  K  L  L  L  L  Q  K  L  Q  Q  L  L  L  L  M  L  P  E  Q  A  R  R  C  W  H  Q  N  P  K  :  R  K  G  I  L  R  S  *  Q  A  C  *  T  I  K  Y  V  R  *  N  Q  *  Q  V  L  *  R  N  W  K  :  G  K  V  L  L  L  E  E  Y  L  F  R  N  *  M  I  E  E  F  Q  L  L  N  L  G :   N  L  M  P  M  E  K  *  M  V  M  H  I  Q  :  *  D  L  C  H  H  L  H  L  L  N  H  L  L  H  P  I  Q  S  L  I  W  R :   L  W  L  W  F  K  E  E  R  S  L  P  T  S  E :   I  *  M  I  S  H  Q  I  L  T  S  L  Y  L  I  V  L  Q  Q  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0197N20.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40230" stop="40299"/>
                    <exon start="41047" stop="41282"/>
                    <exon start="41385" stop="41433"/>
                    <exon start="41540" stop="41724"/>
                    <exon start="42348" stop="42537"/>
                    <exon start="42712" stop="42801"/>
                    <exon start="44022" stop="44095"/>
                    <exon start="44189" stop="44231"/>
                    <exon start="44329" stop="44396"/>
                    <exon start="45280" stop="45324"/>
                    <exon start="45412" stop="45477"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1116</number_coding_nucleotides>
                  <number_encoded_amino_acids>372</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELDNMASQSDSPPNSVNENTQNPASQPAAENHQGPKPEAASGSSPASVFVNSEPIREDQVQNAMKFLSHPKVRGSPVMYRRSFLERKGLTKEEIDEAFRRVPDPTPTVTSTQPVAANEDGTQKPSSTSTSQAALQNLQPASAPSNSMKKMGYLSHFHWTHAVIAVGLLAASGAGTAVLFKKSIIPRLKSWIRKVVMDEEEDEKGIVKGKPSLAEEAAVAAKAAAAAAADVARASQEMLASKSEEKRYFEELTSLLNYQVREMKSMTSAIEKLEGQSTTSGRIPVSELDDRRISVTQSRQSYANGKVNGDAHSVRSLSPPASVEPSAAPHPKSYMEIMAMVQRGEKPPNIRDINDQPPNPNQPVPDRVAAKPK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="55398" PGL_stop="55853"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55398" e_stop="55853"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="55398" e_stop="55853" e_length="456"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55398" stop="55853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326345" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGTCTCCATCTGATCAATTGCGTAAGAAGAGTAACTCCACTGGCTCCTCTTCTAAGCGGTGGAAGTTACGTGACTTCACTCACCGGAGTAACAGTGAGGGTAAAGATACATTCGTGTTTTTGACAACTCCGTTCAAAAAAAGAGAAGAGAAAACAGAGATTACGAGAACCGACTCTGGAATAATCACCGGAAAAGTTCCCGCCGTTGAAGATTTTCCGGCGTTGCGTTGCTCGATAAGCGGAAAAGATAAACGGAAGTCCTATTTACCATACAGGCAAGATTTACTAAGCTTTCTGGGTAATGTGAATGGGCTAAATCGAAATTTACAGCATTTCTGAGGCTAATTACAGTGAACGAAATCTTCAGATAATTAAATAGTTAATCAGTGATTAAGCATGGGTAAATAATATCTAATGGATTATGAATGAAATATTGAATTAATTTAACAGGTTAT</gDNA_template>
            <first_frame> R  V  S  I  *  S  I  A  *  E  E  *  L  H  W  L  L  F  *  A  V  E  V  T  *  L  H  S  P  E  *  Q  *  G  *  R  Y  I  R  V  F  D  N  S  V  Q  K  K  R  R  E  N  R  D  Y  E  N  R  L  W  N  N  H  R  K  S  S  R  R  *  R  F  S  G  V  A  L  L  D  K  R  K  R  *  T  E  V  L  F  T  I  Q  A  R  F  T  K  L  S  G  *  C  E  W  A  K  S  K  F  T  A  F  L  R  L  I  T  V  N  E  I  F  R  *  L  N  S  *  S  V  I  K  H  G  *  I  I  S  N  G  L  *  M  K  Y  *  I  N  L  T  G  Y </first_frame>
            <second_frame>  E  S  P  S  D  Q  L  R  K  K  S  N  S  T  G  S  S  S  K  R  W  K  L  R  D  F  T  H  R  S  N  S  E  G  K  D  T  F  V  F  L  T  T  P  F  K  K  R  E  E  K  T  E  I  T  R  T  D  S  G  I  I  T  G  K  V  P  A  V  E  D  F  P  A  L  R  C  S  I  S  G  K  D  K  R  K  S  Y  L  P  Y  R  Q  D  L  L  S  F  L  G  N  V  N  G  L  N  R  N  L  Q  H  F  *  G  *  L  Q  *  T  K  S  S  D  N  *  I  V  N  Q  *  L  S  M  G  K  *  Y  L  M  D  Y  E  *  N  I  E  L  I  *  Q  V   </second_frame>
            <third_frame>   S  L  H  L  I  N  C  V  R  R  V  T  P  L  A  P  L  L  S  G  G  S  Y  V  T  S  L  T  G  V  T  V  R  V  K  I  H  S  C  F  *  Q  L  R  S  K  K  E  K  R  K  Q  R  L  R  E  P  T  L  E  *  S  P  E  K  F  P  P  L  K  I  F  R  R  C  V  A  R  *  A  E  K  I  N  G  S  P  I  Y  H  T  G  K  I  Y  *  A  F  W  V  M  *  M  G  *  I  E  I  Y  S  I  S  E  A  N  Y  S  E  R  N  L  Q  I  I  K  *  L  I  S  D  *  A  W  V  N  N  I  *  W  I  M  N  E  I  L  N  *  F  N  R  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0197N20.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55399" stop="55737"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESPSDQLRKKSNSTGSSSKRWKLRDFTHRSNSEGKDTFVFLTTPFKKREEKTEITRTDSGIITGKVPAVEDFPALRCSISGKDKRKSYLPYRQDLLSFLGNVNGLNRNLQHF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="55857" PGL_stop="55487"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55857" e_stop="55487"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="55857" e_stop="55487" e_length="371"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55857" stop="55487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338334" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATACATAACCTGTTAAATTAATTCAATATTTCATTCATAATCCATTAGATATTATTTACCCATGCTTAATCACTGATTAACTATTTAATTATCTGAAGATTTCGTTCACTGTAATTAGCCTCAGAAATGCTGTAAATTTCGATTTAGCCCATTCACATTACCCAGAAAGCTTAGTAAATCTTGCCTGTATGGTAAATAGGACTTCCGTTTATCTTTTCCGCTTATCGAGCAACGCAACGCCGGAAAATCTTCAACGGCGGGAACTTTTCCGGTGATTATTCCAGAGTCGGTTCTCGTAATCTCTGTTTTCTCTTCTCTTTTTTTGAACGGAGTTGTCAAAAACACGAATGTATCTTTACCCTCACTGTTAC</gDNA_template>
            <first_frame> I  H  N  L  L  N  *  F  N  I  S  F  I  I  H  *  I  L  F  T  H  A  *  S  L  I  N  Y  L  I  I  *  R  F  R  S  L  *  L  A  S  E  M  L  *  I  S  I  *  P  I  H  I  T  Q  K  A  *  *  I  L  P  V  W  *  I  G  L  P  F  I  F  S  A  Y  R  A  T  Q  R  R  K  I  F  N  G  G  N  F  S  G  D  Y  S  R  V  G  S  R  N  L  C  F  L  F  S  F  F  E  R  S  C  Q  K  H  E  C  I  F  T  L  T  V   </first_frame>
            <second_frame>  Y  I  T  C  *  I  N  S  I  F  H  S  *  S  I  R  Y  Y  L  P  M  L  N  H  *  L  T  I  *  L  S  E  D  F  V  H  C  N  *  P  Q  K  C  C  K  F  R  F  S  P  F  T  L  P  R  K  L  S  K  S  C  L  Y  G  K  *  D  F  R  L  S  F  P  L  I  E  Q  R  N  A  G  K  S  S  T  A  G  T  F  P  V  I  I  P  E  S  V  L  V  I  S  V  F  S  S  L  F  L  N  G  V  V  K  N  T  N  V  S  L  P  S  L  L  </second_frame>
            <third_frame>   T  *  P  V  K  L  I  Q  Y  F  I  H  N  P  L  D  I  I  Y  P  C  L  I  T  D  *  L  F  N  Y  L  K  I  S  F  T  V  I  S  L  R  N  A  V  N  F  D  L  A  H  S  H  Y  P  E  S  L  V  N  L  A  C  M  V  N  R  T  S  V  Y  L  F  R  L  S  S  N  A  T  P  E  N  L  Q  R  R  E  L  F  R  *  L  F  Q  S  R  F  S  *  S  L  F  S  L  L  F  F  *  T  E  L  S  K  T  R  M  Y  L  Y  P  H  C  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0197N20.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55777" stop="55583"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFNYLKISFTVISLRNAVNFDLAHSHYPESLVNLACMVNRTSVYLFRLSSNATPENLQRRELFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="69624" PGL_stop="60407"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69624" e_stop="69515"/>
            <exon e_start="67871" e_stop="67774"/>
            <exon e_start="67664" e_stop="67491"/>
            <exon e_start="66408" e_stop="66308"/>
            <exon e_start="66061" e_stop="65986"/>
            <exon e_start="65905" e_stop="65846"/>
            <exon e_start="64813" e_stop="64629"/>
            <exon e_start="63554" e_stop="63458"/>
            <exon e_start="63088" e_stop="63002"/>
            <exon e_start="61770" e_stop="61712"/>
            <exon e_start="61626" e_stop="61535"/>
            <exon e_start="61426" e_stop="61349"/>
            <exon e_start="61239" e_stop="61079"/>
            <exon e_start="60989" e_stop="60407"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.564" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.884" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.272" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69624" e_stop="69515" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.929">
            <gDNA_intron_boundary i_start="69514" i_stop="67872" i_length="1643"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67871" e_stop="67774" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.564">
            <gDNA_intron_boundary i_start="67773" i_stop="67665" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67664" e_stop="67491" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.828" acc_prob="0.980">
            <gDNA_intron_boundary i_start="67490" i_stop="66409" i_length="1082"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="66408" e_stop="66308" e_length="101"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.884">
            <gDNA_intron_boundary i_start="66307" i_stop="66062" i_length="246"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="66061" e_stop="65986" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="0.998">
            <gDNA_intron_boundary i_start="65985" i_stop="65906" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="65905" e_stop="65846" e_length="60"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="65845" i_stop="64814" i_length="1032"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="64813" e_stop="64629" e_length="185"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64628" i_stop="63555" i_length="1074"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="63554" e_stop="63458" e_length="97"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.977">
            <gDNA_intron_boundary i_start="63457" i_stop="63089" i_length="369"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="63088" e_stop="63002" e_length="87"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63001" i_stop="61771" i_length="1231"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="61770" e_stop="61712" e_length="59"/>
          </exon>
          <intron i_serial="10" don_prob="0.973" acc_prob="0.999">
            <gDNA_intron_boundary i_start="61711" i_stop="61627" i_length="85"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="61626" e_stop="61535" e_length="92"/>
          </exon>
          <intron i_serial="11" don_prob="0.956" acc_prob="0.933">
            <gDNA_intron_boundary i_start="61534" i_stop="61427" i_length="108"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="61426" e_stop="61349" e_length="78"/>
          </exon>
          <intron i_serial="12" don_prob="0.272" acc_prob="0.973">
            <gDNA_intron_boundary i_start="61348" i_stop="61240" i_length="109"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="61239" e_stop="61079" e_length="161"/>
          </exon>
          <intron i_serial="13" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="61078" i_stop="60990" i_length="89"/>
          </intron>
          <exon e_serial="14" e_score="0.986">
            <gDNA_exon_boundary e_start="60989" e_stop="60407" e_length="583"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69624" stop="69515"/>
              <exon start="67871" stop="67774"/>
              <exon start="67664" stop="67491"/>
              <exon start="66408" stop="66308"/>
              <exon start="66061" stop="65986"/>
              <exon start="65905" stop="65846"/>
              <exon start="64813" stop="64629"/>
              <exon start="63554" stop="63458"/>
              <exon start="63088" stop="63002"/>
              <exon start="61770" stop="61712"/>
              <exon start="61626" stop="61535"/>
              <exon start="61426" stop="61349"/>
              <exon start="61239" stop="61079"/>
              <exon start="60989" stop="60407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69624" stop="69515"/>
              <exon start="67871" stop="67774"/>
              <exon start="67664" stop="67603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334850" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGAGGAGGAGGAGCAGCTCCAGCAGCAAAGGCAAGTGAACCAGTGCCACATCCACCAAAAGATCAGCTTCCTAATGTTTCTTACTGCATTACTAGTCCTCCCCCATGGC : CTGAAGCTATTCTTCTTGGATTTCAGCATTATCTTGTTATGCTTGGTACCATTGTTATCATTCCTACAGCTCTAGTTCCCCAAATGGGAGGTGGAAAT : GAGGAAAAAGCCCAAGTTATTCAGACATCGCTATTCGTCGCTGGGCTGAACACCTTGTTGCAGTCTATCTTTGGGACTAGATTGCCTGCTGTGATTGGAGGGTCTTATACCTTTGTTGCACCTACAATCTCGATTATCCTTTCTGGACAATGGAATGATGAAGATCCTGTGTCG : AAATTCAAGAAGATAATGCGGGCCACCCAAGGTGCCCTTATTGTTGCTTCAACCCTTCAGATTGTCCTAGGCTTCAGTGGTCTCTGGCGCAATGTTACAAG : GTTTCTGAGTCCACTTTCAGCTGTTCCTTTGGTTTCTCTTGTTGGCTTTGGTCTTTATGAGTTTGGTTTTCCTGGG : GTTGCCAAATGTGTTGAAATTGGGTTGCCAGAGCTAGTCCTTTTAGTCATTTTCTCTCAG : TATCTGGCACACCTGATACGTCCAGGGAAGAATATATTTGATCGTTTTGCTGTTCTTTTCACGGTGATCATTGTATGGATTTATGCACACCTACTCACTGTGGGCGGGGCTTACAATGGAAAGCCACCGAAGACACAAGCAAGCTGCAGAACTGACCGTGCTGGACTCATTAGTGGTGCTCAATG : GATTAGTATTCCTTACCCTTTCCAATGGGGACCTCCTTCATTCAATGCTGGTGAAGCATTTGCTATGATGATGGCTAGTTTTGTTGCTCTAGTAGAG : TCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTTAGTCGTGGTGTTGGTTGGCAG : GGAGTTGGCATTCTACTATCAGGATTATTTGGCACTGGGAATGGATCTTCTGTATCCGT : GGAGAATGCTGGTCTATTAGCATTGACACGTGTTGGCAGTAGAAGAGTTGTTCAGATATCTGCTGCGTTCATGATTTTCTTTTCAATTCTCG : GGAAATTTGGAGCTGTCTTTGCTTCAATTCCTGCACCTATTGTTGGTGCTTTATATTGCCTTTTCTTCGCTTATGTAG : GCGCTGGAGGCTTAGGTTTTCTTCAGTTCTGCAATCTTAATAGTTTCCGCACCAAGTTTATATTAGGTTTCTCCGTCTTTCTTGGCTTGTCCATTCCACAGTACTTCAATGAGTATACTGCTGTTGCTGGTTATGGACCTGTTCACACACATGCAAGATGG : TTCAACGACATGGCCAACGTTCCCTTTCAATCAAAAGCTTTTGTGGCGGGTATCGTTGCCTTTTTCCTGGACAACACAATGCACAAAAAGGATGGCCAGACAAGAAAGGACAGAGGCAAGCACTGGTGGGACAAATTCAAGTCCTTCAAGACTGACACGAGAAGTGAGGAATTCTACTCCCTCCCTTTCAATCTGAACAAGTATTTCCCATCTGTGTGATTTGGCGACGCCACGGACACAAAGGTTTCATCTTTTTACTAGTAAGTACTAGAGTTCATCTGTGCTTGTTGGAGAGGGGGGGAGGTAGGTTGCTGCTGCAACATCAATTTTCTTCTTTCATGAGAAATGAAGTATGAAGAAGCTTAGAACAACAGTTATTAGTTTAAGTATTTCCTACTGTTGTAAATTTATGGATCATTTGGATTCAACTTTAACTAGCAATTGAGCAAGCAATCCTTTTATGAATTATAATTAGCAGTAAATCAGTGTACAACAAAACACTAGGACAATTTTTTTTTTTGTCTTGCATGAAAAAAATAGAAAAATTGTAAAATGGTTTTTAAATTATGTGAAATCAAACAAA</gDNA_template>
            <first_frame> W  R  R  R  S  S  S  S  S  K  G  K  *  T  S  A  T  S  T  K  R  S  A  S  *  C  F  L  L  H  Y  *  S  S  P  M  A :   *  S  Y  S  S  W  I  S  A  L  S  C  Y  A  W  Y  H  C  Y  H  S  Y  S  S  S  S  P  N  G  R  W  K   : *  G  K  S  P  S  Y  S  D  I  A  I  R  R  W  A  E  H  L  V  A  V  Y  L  W  D  *  I  A  C  C  D  W  R  V  L  Y  L  C  C  T  Y  N  L  D  Y  P  F  W  T  M  E  *  *  R  S  C  V   : E  I  Q  E  D  N  A  G  H  P  R  C  P  Y  C  C  F  N  P  S  D  C  P  R  L  Q  W  S  L  A  Q  C  Y  K  :  V  S  E  S  T  F  S  C  S  F  G  F  S  C  W  L  W  S  L  *  V  W  F  S  W   : G  C  Q  M  C  *  N  W  V  A  R  A  S  P  F  S  H  F  L  S   : V  S  G  T  P  D  T  S  R  E  E  Y  I  *  S  F  C  C  S  F  H  G  D  H  C  M  D  L  C  T  P  T  H  C  G  R  G  L  Q  W  K  A  T  E  D  T  S  K  L  Q  N  *  P  C  W  T  H  *  W  C  S  M  :  D  *  Y  S  L  P  F  P  M  G  T  S  F  I  Q  C  W  *  S  I  C  Y  D  D  G  *  F  C  C  S  S  R   : V  H  W  C  F  Y  C  S  C  K  I  C  K  C  H  S  L  T  T  I  H  T  *  S  W  C  W  L  A   : G  S  W  H  S  T  I  R  I  I  W  H  W  E  W  I  F  C  I  R  :  G  E  C  W  S  I  S  I  D  T  C  W  Q  *  K  S  C  S  D  I  C  C  V  H  D  F  L  F  N  S  R :   E  I  W  S  C  L  C  F  N  S  C  T  Y  C  W  C  F  I  L  P  F  L  R  L  C  R :   R  W  R  L  R  F  S  S  V  L  Q  S  *  *  F  P  H  Q  V  Y  I  R  F  L  R  L  S  W  L  V  H  S  T  V  L  Q  *  V  Y  C  C  C  W  L  W  T  C  S  H  T  C  K  M   : V  Q  R  H  G  Q  R  S  L  S  I  K  S  F  C  G  G  Y  R  C  L  F  P  G  Q  H  N  A  Q  K  G  W  P  D  K  K  G  Q  R  Q  A  L  V  G  Q  I  Q  V  L  Q  D  *  H  E  K  *  G  I  L  L  P  P  F  Q  S  E  Q  V  F  P  I  C  V  I  W  R  R  H  G  H  K  G  F  I  F  L  L  V  S  T  R  V  H  L  C  L  L  E  R  G  G  G  R  L  L  L  Q  H  Q  F  S  S  F  M  R  N  E  V  *  R  S  L  E  Q  Q  L  L  V  *  V  F  P  T  V  V  N  L  W  I  I  W  I  Q  L  *  L  A  I  E  Q  A  I  L  L  *  I  I  I  S  S  K  S  V  Y  N  K  T  L  G  Q  F  F  F  L  S  C  M  K  K  I  E  K  L  *  N  G  F  *  I  M  *  N  Q  T   </first_frame>
            <second_frame>  G  G  G  G  A  A  P  A  A  K  A  S  E  P  V  P  H  P  P  K  D  Q  L  P  N  V  S  Y  C  I  T  S  P  P  P  W   : P  E  A  I  L  L  G  F  Q  H  Y  L  V  M  L  G  T  I  V  I  I  P  T  A  L  V  P  Q  M  G  G  G  N  :  E  E  K  A  Q  V  I  Q  T  S  L  F  V  A  G  L  N  T  L  L  Q  S  I  F  G  T  R  L  P  A  V  I  G  G  S  Y  T  F  V  A  P  T  I  S  I  I  L  S  G  Q  W  N  D  E  D  P  V  S  :  K  F  K  K  I  M  R  A  T  Q  G  A  L  I  V  A  S  T  L  Q  I  V  L  G  F  S  G  L  W  R  N  V  T  R :   F  L  S  P  L  S  A  V  P  L  V  S  L  V  G  F  G  L  Y  E  F  G  F  P  G  :  V  A  K  C  V  E  I  G  L  P  E  L  V  L  L  V  I  F  S  Q  :  Y  L  A  H  L  I  R  P  G  K  N  I  F  D  R  F  A  V  L  F  T  V  I  I  V  W  I  Y  A  H  L  L  T  V  G  G  A  Y  N  G  K  P  P  K  T  Q  A  S  C  R  T  D  R  A  G  L  I  S  G  A  Q  W :   I  S  I  P  Y  P  F  Q  W  G  P  P  S  F  N  A  G  E  A  F  A  M  M  M  A  S  F  V  A  L  V  E  :  S  T  G  A  F  I  A  V  A  R  Y  A  S  A  T  P  L  P  P  S  I  L  S  R  G  V  G  W  Q  :  G  V  G  I  L  L  S  G  L  F  G  T  G  N  G  S  S  V  S  V :   E  N  A  G  L  L  A  L  T  R  V  G  S  R  R  V  V  Q  I  S  A  A  F  M  I  F  F  S  I  L   : G  K  F  G  A  V  F  A  S  I  P  A  P  I  V  G  A  L  Y  C  L  F  F  A  Y  V   : G  A  G  G  L  G  F  L  Q  F  C  N  L  N  S  F  R  T  K  F  I  L  G  F  S  V  F  L  G  L  S  I  P  Q  Y  F  N  E  Y  T  A  V  A  G  Y  G  P  V  H  T  H  A  R  W  :  F  N  D  M  A  N  V  P  F  Q  S  K  A  F  V  A  G  I  V  A  F  F  L  D  N  T  M  H  K  K  D  G  Q  T  R  K  D  R  G  K  H  W  W  D  K  F  K  S  F  K  T  D  T  R  S  E  E  F  Y  S  L  P  F  N  L  N  K  Y  F  P  S  V  *  F  G  D  A  T  D  T  K  V  S  S  F  Y  *  *  V  L  E  F  I  C  A  C  W  R  G  G  E  V  G  C  C  C  N  I  N  F  L  L  S  *  E  M  K  Y  E  E  A  *  N  N  S  Y  *  F  K  Y  F  L  L  L  *  I  Y  G  S  F  G  F  N  F  N  *  Q  L  S  K  Q  S  F  Y  E  L  *  L  A  V  N  Q  C  T  T  K  H  *  D  N  F  F  F  C  L  A  *  K  K  *  K  N  C  K  M  V  F  K  L  C  E  I  K  Q  </second_frame>
            <third_frame>   E  E  E  E  Q  L  Q  Q  Q  R  Q  V  N  Q  C  H  I  H  Q  K  I  S  F  L  M  F  L  T  A  L  L  V  L  P  H  G  :  L  K  L  F  F  L  D  F  S  I  I  L  L  C  L  V  P  L  L  S  F  L  Q  L  *  F  P  K  W  E  V  E  M :   R  K  K  P  K  L  F  R  H  R  Y  S  S  L  G  *  T  P  C  C  S  L  S  L  G  L  D  C  L  L  *  L  E  G  L  I  P  L  L  H  L  Q  S  R  L  S  F  L  D  N  G  M  M  K  I  L  C  R :   N  S  R  R  *  C  G  P  P  K  V  P  L  L  L  L  Q  P  F  R  L  S  *  A  S  V  V  S  G  A  M  L  Q   : G  F  *  V  H  F  Q  L  F  L  W  F  L  L  L  A  L  V  F  M  S  L  V  F  L  G :   L  P  N  V  L  K  L  G  C  Q  S  *  S  F  *  S  F  S  L  S :   I  W  H  T  *  Y  V  Q  G  R  I  Y  L  I  V  L  L  F  F  S  R  *  S  L  Y  G  F  M  H  T  Y  S  L  W  A  G  L  T  M  E  S  H  R  R  H  K  Q  A  A  E  L  T  V  L  D  S  L  V  V  L  N   : G  L  V  F  L  T  L  S  N  G  D  L  L  H  S  M  L  V  K  H  L  L  *  *  W  L  V  L  L  L  *  *  S :   P  L  V  L  L  L  Q  L  Q  D  M  Q  V  P  L  P  Y  H  H  P  Y  L  V  V  V  L  V  G  R :   E  L  A  F  Y  Y  Q  D  Y  L  A  L  G  M  D  L  L  Y  P   : W  R  M  L  V  Y  *  H  *  H  V  L  A  V  E  E  L  F  R  Y  L  L  R  S  *  F  S  F  Q  F  S  :  G  N  L  E  L  S  L  L  Q  F  L  H  L  L  L  V  L  Y  I  A  F  S  S  L  M  *  :  A  L  E  A  *  V  F  F  S  S  A  I  L  I  V  S  A  P  S  L  Y  *  V  S  P  S  F  L  A  C  P  F  H  S  T  S  M  S  I  L  L  L  L  V  M  D  L  F  T  H  M  Q  D  G :   S  T  T  W  P  T  F  P  F  N  Q  K  L  L  W  R  V  S  L  P  F  S  W  T  T  Q  C  T  K  R  M  A  R  Q  E  R  T  E  A  S  T  G  G  T  N  S  S  P  S  R  L  T  R  E  V  R  N  S  T  P  S  L  S  I  *  T  S  I  S  H  L  C  D  L  A  T  P  R  T  Q  R  F  H  L  F  T  S  K  Y  *  S  S  S  V  L  V  G  E  G  G  R  *  V  A  A  A  T  S  I  F  F  F  H  E  K  *  S  M  K  K  L  R  T  T  V  I  S  L  S  I  S  Y  C  C  K  F  M  D  H  L  D  S  T  L  T  S  N  *  A  S  N  P  F  M  N  Y  N  *  Q  *  I  S  V  Q  Q  N  T  R  T  I  F  F  F  V  L  H  E  K  N  R  K  I  V  K  W  F  L  N  Y  V  K  S  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0197N20.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69623" stop="69515"/>
                    <exon start="67871" stop="67774"/>
                    <exon start="67664" stop="67491"/>
                    <exon start="66408" stop="66308"/>
                    <exon start="66061" stop="65986"/>
                    <exon start="65905" stop="65846"/>
                    <exon start="64813" stop="64629"/>
                    <exon start="63554" stop="63458"/>
                    <exon start="63088" stop="63002"/>
                    <exon start="61770" stop="61712"/>
                    <exon start="61626" stop="61535"/>
                    <exon start="61426" stop="61349"/>
                    <exon start="61239" stop="61079"/>
                    <exon start="60989" stop="60771"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1593</number_coding_nucleotides>
                  <number_encoded_amino_acids>531</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGGGAAPAAKASEPVPHPPKDQLPNVSYCITSPPPWPEAILLGFQHYLVMLGTIVIIPTALVPQMGGGNEEKAQVIQTSLFVAGLNTLLQSIFGTRLPAVIGGSYTFVAPTISIILSGQWNDEDPVSKFKKIMRATQGALIVASTLQIVLGFSGLWRNVTRFLSPLSAVPLVSLVGFGLYEFGFPGVAKCVEIGLPELVLLVIFSQYLAHLIRPGKNIFDRFAVLFTVIIVWIYAHLLTVGGAYNGKPPKTQASCRTDRAGLISGAQWISIPYPFQWGPPSFNAGEAFAMMMASFVALVESTGAFIAVARYASATPLPPSILSRGVGWQGVGILLSGLFGTGNGSSVSVENAGLLALTRVGSRRVVQISAAFMIFFSILGKFGAVFASIPAPIVGALYCLFFAYVGAGGLGFLQFCNLNSFRTKFILGFSVFLGLSIPQYFNEYTAVAGYGPVHTHARWFNDMANVPFQSKAFVAGIVAFFLDNTMHKKDGQTRKDRGKHWWDKFKSFKTDTRSEEFYSLPFNLNKYFPSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="69624" e_stop="69515"/>
            <exon e_start="67871" e_stop="67774"/>
            <exon e_start="67664" e_stop="67491"/>
            <exon e_start="66408" e_stop="66308"/>
            <exon e_start="66061" e_stop="66053"/>
            <exon e_start="63088" e_stop="63002"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.929" e_score="0.982"/>
          <exon-intron don_prob="0.000" acc_prob="0.564" e_score="0.980"/>
          <exon-intron don_prob="0.828" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.884" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="69624" e_stop="69515" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.929">
            <gDNA_intron_boundary i_start="69514" i_stop="67872" i_length="1643"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="67871" e_stop="67774" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.564">
            <gDNA_intron_boundary i_start="67773" i_stop="67665" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67664" e_stop="67491" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.828" acc_prob="0.980">
            <gDNA_intron_boundary i_start="67490" i_stop="66409" i_length="1082"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="66408" e_stop="66308" e_length="101"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.884">
            <gDNA_intron_boundary i_start="66307" i_stop="66062" i_length="246"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="66061" e_stop="66053" e_length="9"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.977">
            <gDNA_intron_boundary i_start="66052" i_stop="63089" i_length="2964"/>
          </intron>
          <exon e_serial="6" e_score="0.977">
            <gDNA_exon_boundary e_start="63088" e_stop="63002" e_length="87"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69624" stop="69515"/>
              <exon start="67871" stop="67774"/>
              <exon start="67664" stop="67603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67871" stop="67774"/>
              <exon start="67664" stop="67491"/>
              <exon start="66408" stop="66308"/>
              <exon start="66061" stop="66053"/>
              <exon start="63088" stop="63002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334849" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGAGGAGGAGGAGCAGCTCCAGCAGCAAAGGCAAGTGAACCAGTGCCACATCCACCAAAAGATCAGCTTCCTAATGTTTCTTACTGCATTACTAGTCCTCCCCCATGGC : CTGAAGCTATTCTTCTTGGATTTCAGCATTATCTTGTTATGCTTGGTACCATTGTTATCATTCCTACAGCTCTAGTTCCCCAAATGGGAGGTGGAAAT : GAGGAAAAAGCCCAAGTTATTCAGACATCGCTATTCGTCGCTGGGCTGAACACCTTGTTGCAGTCTATCTTTGGGACTAGATTGCCTGCTGTGATTGGAGGGTCTTATACCTTTGTTGCACCTACAATCTCGATTATCCTTTCTGGACAATGGAATGATGAAGATCCTGTGTCG : AAATTCAAGAAGATAATGCGGGCCACCCAAGGTGCCCTTATTGTTGCTTCAACCCTTCAGATTGTCCTAGGCTTCAGTGGTCTCTGGCGCAATGTTACAAG : GTTTCTGAG : TCCACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCTTACCACCATCCATACTTAGTCGTGGTGTTGGTTGGCAG</gDNA_template>
            <first_frame> W  R  R  R  S  S  S  S  S  K  G  K  *  T  S  A  T  S  T  K  R  S  A  S  *  C  F  L  L  H  Y  *  S  S  P  M  A :   *  S  Y  S  S  W  I  S  A  L  S  C  Y  A  W  Y  H  C  Y  H  S  Y  S  S  S  S  P  N  G  R  W  K   : *  G  K  S  P  S  Y  S  D  I  A  I  R  R  W  A  E  H  L  V  A  V  Y  L  W  D  *  I  A  C  C  D  W  R  V  L  Y  L  C  C  T  Y  N  L  D  Y  P  F  W  T  M  E  *  *  R  S  C  V   : E  I  Q  E  D  N  A  G  H  P  R  C  P  Y  C  C  F  N  P  S  D  C  P  R  L  Q  W  S  L  A  Q  C  Y  K  :  V  S  E  :  S  T  G  A  F  I  A  V  A  R  Y  A  S  A  T  P  L  P  P  S  I  L  S  R  G  V  G  W  Q </first_frame>
            <second_frame>  G  G  G  G  A  A  P  A  A  K  A  S  E  P  V  P  H  P  P  K  D  Q  L  P  N  V  S  Y  C  I  T  S  P  P  P  W   : P  E  A  I  L  L  G  F  Q  H  Y  L  V  M  L  G  T  I  V  I  I  P  T  A  L  V  P  Q  M  G  G  G  N  :  E  E  K  A  Q  V  I  Q  T  S  L  F  V  A  G  L  N  T  L  L  Q  S  I  F  G  T  R  L  P  A  V  I  G  G  S  Y  T  F  V  A  P  T  I  S  I  I  L  S  G  Q  W  N  D  E  D  P  V  S  :  K  F  K  K  I  M  R  A  T  Q  G  A  L  I  V  A  S  T  L  Q  I  V  L  G  F  S  G  L  W  R  N  V  T  R :   F  L  S :   P  L  V  L  L  L  Q  L  Q  D  M  Q  V  P  L  P  Y  H  H  P  Y  L  V  V  V  L  V  G   </second_frame>
            <third_frame>   E  E  E  E  Q  L  Q  Q  Q  R  Q  V  N  Q  C  H  I  H  Q  K  I  S  F  L  M  F  L  T  A  L  L  V  L  P  H  G  :  L  K  L  F  F  L  D  F  S  I  I  L  L  C  L  V  P  L  L  S  F  L  Q  L  *  F  P  K  W  E  V  E  M :   R  K  K  P  K  L  F  R  H  R  Y  S  S  L  G  *  T  P  C  C  S  L  S  L  G  L  D  C  L  L  *  L  E  G  L  I  P  L  L  H  L  Q  S  R  L  S  F  L  D  N  G  M  M  K  I  L  C  R :   N  S  R  R  *  C  G  P  P  K  V  P  L  L  L  L  Q  P  F  R  L  S  *  A  S  V  V  S  G  A  M  L  Q   : G  F  *   : V  H  W  C  F  Y  C  S  C  K  I  C  K  C  H  S  L  T  T  I  H  T  *  S  W  C  W  L  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0197N20.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69623" stop="69515"/>
                    <exon start="67871" stop="67774"/>
                    <exon start="67664" stop="67491"/>
                    <exon start="66408" stop="66308"/>
                    <exon start="66061" stop="66053"/>
                    <exon start="63088" stop="63004"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGGGAAPAAKASEPVPHPPKDQLPNVSYCITSPPPWPEAILLGFQHYLVMLGTIVIIPTALVPQMGGGNEEKAQVIQTSLFVAGLNTLLQSIFGTRLPAVIGGSYTFVAPTISIILSGQWNDEDPVSKFKKIMRATQGALIVASTLQIVLGFSGLWRNVTRFLSPLVLLLQLQDMQVPLPYHHPYLVVVLVG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="79256" PGL_stop="79516"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79256" e_stop="79516"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="79256" e_stop="79516" e_length="261"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79256" stop="79516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342914" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTGCAGAAGTTGTATGAGCGATCCATCCGAATGAGGACAAGATTCAAGCTTAGCTTCTTATATTCTTTCTATGTGATAGATGTGAAAACCAAACAAGACTGGTGTTTGATGATATGTAAGTTGGCTTCATGTTATATAAACGTGAGAATCATTAAATTAGTGGTCATTGTTTGGCACAAAATCTGGCGTCAACGTGTGTGTATTATATAAAAAGACATGGGCAAGTAGTCCATGTGTATGAGTCAGTTTTTTTTACAAGG</gDNA_template>
            <first_frame> G  A  E  V  V  *  A  I  H  P  N  E  D  K  I  Q  A  *  L  L  I  F  F  L  C  D  R  C  E  N  Q  T  R  L  V  F  D  D  M  *  V  G  F  M  L  Y  K  R  E  N  H  *  I  S  G  H  C  L  A  Q  N  L  A  S  T  C  V  Y  Y  I  K  R  H  G  Q  V  V  H  V  Y  E  S  V  F  F  T  R </first_frame>
            <second_frame>  V  Q  K  L  Y  E  R  S  I  R  M  R  T  R  F  K  L  S  F  L  Y  S  F  Y  V  I  D  V  K  T  K  Q  D  W  C  L  M  I  C  K  L  A  S  C  Y  I  N  V  R  I  I  K  L  V  V  I  V  W  H  K  I  W  R  Q  R  V  C  I  I  *  K  D  M  G  K  *  S  M  C  M  S  Q  F  F  L  Q   </second_frame>
            <third_frame>   C  R  S  C  M  S  D  P  S  E  *  G  Q  D  S  S  L  A  S  Y  I  L  S  M  *  *  M  *  K  P  N  K  T  G  V  *  *  Y  V  S  W  L  H  V  I  *  T  *  E  S  L  N  *  W  S  L  F  G  T  K  S  G  V  N  V  C  V  L  Y  K  K  T  W  A  S  S  P  C  V  *  V  S  F  F  Y  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0197N20.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79257" stop="79466"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQKLYERSIRMRTRFKLSFLYSFYVIDVKTKQDWCLMICKLASCYINVRIIKLVVIVWHKIWRQRVCII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="85516" PGL_stop="89129"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85516" e_stop="88064"/>
            <exon e_start="88662" e_stop="89129"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="85516" e_stop="88064" e_length="2549"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="88065" i_stop="88661" i_length="597"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88662" e_stop="89129" e_length="468"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85516" stop="88064"/>
              <exon start="88662" stop="89129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319314" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTTTCTCCCCAAGGAGATAGCCCTTCAGGTGGGGAGACCTGCACAGGTGATGAGCTTAAGCCAAAGACATCTCCTGTAGATAGTTCTTCAGGTAACCATAGTGGGCGAAATGACGGTGATGCTAATGGTGATAAAGAGAAACAGTTCGTTGTTGCTAATACGTCGTGGTCTGAGGGTAAAGTACATGCTAATAGAAGTGCAATGACGGATTTTAACAGAGAAAGAAGGCCCTCTTCATCTCCTTCTGAAGAAACAACCACGGGAGAGTGCTTTAATTCATCCTGCACTGATTCACAGATGGCTGGAAATTTGAAATCAGGTGTTAATGAGAAGTTAGTTGAGATGGCAAAGTCTGCTGCGGCTCCTTGCAATGTATTCGAAAAAGCAAGTGATGGTGAACAGAGCAGACAATTCCATGAGGAAAAAGTAATTTCCACTAAGACACTTGATAATGTTCTAGATGGCGAATCAGGTGGACATGGTAGTTCAATAGGAGAGGACAAAGTCACTAATGGCCTTGTAAGCATAGAAGGCTTGAAACGACCAGTTGGAATTTCTGCTTTTAAATATGAGGGCGACGACAAAAATGATGTGAGTAGGGTGTTAGGTGTTGCTAGTACAGAGGTGAAACCGCCTTCAGTTGTGGTGAAATCTGAAGCTACAGAAAGAGGTGACAAGGAAGAGTTGCAACAAACTGGTTCTAGTCGAGACACTATTGCAGGGAAAGGTGGACATTCTGATGAAATGGATGCAAATAGTGTTTTAAAGTCAGAACAGCCAAATTCTGATAAAAAGACTGTTGATACTTCAGTTATTGAGGATAAAGCCGCATCTGAATGTAATTTAGCTATAAGGAATTTGACAAAGGATGAACCTAAAGCTGAAGAGATGACGAAGCATGATTCTGGCAGTGGATTACTTACTAAGAAAGAGACACCTGGATTTTCTAATGCAGAAGTGGAAAATTTGGAATCAAGAGAATCTAAATACTCTGGTGTAGAGGCAGATAGACCAAAGGAATGCGTATCCATCAAAGGGGAAAATTCTTCAAGCTCTGCTGCTGCTGCCCCAGATTCAGCTTCAAAGATGAAGTTTGACTTAAATGAAGGTTTTATTTCTGATGAGGGGAAATATGGGGAGTCAATCAACTCGACAGGCCCTGGGTGTTTGTCGAATGTCCAAATAATGAGCCCATCAACATTTGCTGTCTCTTCTGTTTCCAGTAGCCTTCCTGCTTCCATTACGGTGGCTGCTGCTGCCAAAGGACCTTTTGTCCCACCAGAAGATCTATTGAGAGTCAAAGGGGAGTTTGGATGGAAAGGATCAGCAGCCACAAGTGCATTTCGTCCGGCTGAGCCAAGAAAACCCCCTGACATGCATTCAAATTCCATGACCATCTCTGTTACTGAAGCTTCCTCCAGCAAGCATGGTCGACCTCCATTAGATATTGATCTGAATGTAGCTGATGAAAGAGTTTTGGAGGATATAAATTCTCAGGATTGTGCTTTAGCAATAGGTTCTGCGGTGGACCATATAACTAATCTTGTTTCATCAAAAAATAAATGTTCAGGCCCTCTTCGTAGTTTTGGAGGACTTGATCTCGATTTGAATAGAGTTGATGAACCTAATGATGTAGGTCAATGCTCCTTGAGTAGCAGTCATAGATTAGAGGGTGCTGTTTTTCCCGCAAGAGCATCTTCATCCAGTATCTTGCCAACTGCAGAAGTGAGGAGGGACTTTGATTTGAATAATGGGCCTGGTGTTGATGATTCATGTGCAGAACAGCCTCTATTCCACCAGAGTCATCAGGGAAACATGCGCTCCCAACTAAATGCTTCTAGCCTCAGAATGAACAATCCAGAAATGGGAAACTTATCATCTTGGTTTGCTCCAGGGAATAGTTACTCAACGATGACAATTCCATCAATGTTGCCTGATCGGGGGGAGCAGCCACCATTTCCAATAATCCCACCCGGTGCCCCGCGAATGTTAGGTCCATCTGCTGCTGGTTCCCCTTATACTCCAGATGTTTTCAGGGGTTCGGTATTGTCATCATCACCTGCTATGCCTTTTCCCGCTGCCCCATTCCAGTATCCTGTGTTCCCTTTTGGAACTACTTTCCCACTTCCCTCTGGAACATATGCTGTTGGATCAACCTCTTATATTGATTCATCCTCGGGTGGAAGACTTTTCACTCCGCCTATAAATTCACAGTTGCTAGGTGCTGTGGCACCTCAATACCCAAGGCCTTATATGGTTTCCCTTCCCGATGCTAACAGCAATGGAGCCACCGACCACAACAGAAAACGGAGCCGGCAAGGTCTGGATCTGAATGCAGGTCCTGGAGCTGTGGACTTGGAAGGGAAAGAAGAGTCAGTTTCGTTGGTAACGAGGCAACTGGACGAGCATGGGAGGATGTATCCTGTAGCTGGAGGTCTACTGAAGAGGAAGGAACCCGAGGGAGGATGGGACAGTGAGAGTTACAGGTTCAAGCAATCACCGTGGCAGTAGGAATGCAAAAAAACCTGCAACTTGGCGATCTTGAAG : TTGTCAAAGGATGGACTATGGTGGGCTCCTCACAAGTATCAGCTTCTAGTATGCTCTTGTGGTTGTGTGATGTGACCAATGATGTGTTCAGTCCCCAACCACTATTTCTCTCAATGTATGAAAGGAAGGAGGATTTCAATGGGTTTGTGAGCACTTTTGTCAACCGTATTGTCTGGGTGGAGACAGATGAGTCTTCCCTCTGTAAATATTTTAACTGTTGGAAGGCTTGAGATCTGCAACACCCGGCAACTGCGGATAAGTTGTCTTATCGTTGGCCAAGATATTGCCAGTGGAGGTTGGATTTCTGGACAGAGTAAAATGGAATGCCTTCTATGTTCTTTGTTGCTAATGATCTTTCTTGCTCCCTACTTTCTTGGCTGTTCTCTCCTCTTTTTTGGCAATTACATAAGTATAAAGAGGTTGACACCAAATTTTGGTACTAAAGTGTCCACCTGCCATGCTTTTATT</gDNA_template>
            <first_frame> L  F  L  P  K  E  I  A  L  Q  V  G  R  P  A  Q  V  M  S  L  S  Q  R  H  L  L  *  I  V  L  Q  V  T  I  V  G  E  M  T  V  M  L  M  V  I  K  R  N  S  S  L  L  L  I  R  R  G  L  R  V  K  Y  M  L  I  E  V  Q  *  R  I  L  T  E  K  E  G  P  L  H  L  L  L  K  K  Q  P  R  E  S  A  L  I  H  P  A  L  I  H  R  W  L  E  I  *  N  Q  V  L  M  R  S  *  L  R  W  Q  S  L  L  R  L  L  A  M  Y  S  K  K  Q  V  M  V  N  R  A  D  N  S  M  R  K  K  *  F  P  L  R  H  L  I  M  F  *  M  A  N  Q  V  D  M  V  V  Q  *  E  R  T  K  S  L  M  A  L  *  A  *  K  A  *  N  D  Q  L  E  F  L  L  L  N  M  R  A  T  T  K  M  M  *  V  G  C  *  V  L  L  V  Q  R  *  N  R  L  Q  L  W  *  N  L  K  L  Q  K  E  V  T  R  K  S  C  N  K  L  V  L  V  E  T  L  L  Q  G  K  V  D  I  L  M  K  W  M  Q  I  V  F  *  S  Q  N  S  Q  I  L  I  K  R  L  L  I  L  Q  L  L  R  I  K  P  H  L  N  V  I  *  L  *  G  I  *  Q  R  M  N  L  K  L  K  R  *  R  S  M  I  L  A  V  D  Y  L  L  R  K  R  H  L  D  F  L  M  Q  K  W  K  I  W  N  Q  E  N  L  N  T  L  V  *  R  Q  I  D  Q  R  N  A  Y  P  S  K  G  K  I  L  Q  A  L  L  L  L  P  Q  I  Q  L  Q  R  *  S  L  T  *  M  K  V  L  F  L  M  R  G  N  M  G  S  Q  S  T  R  Q  A  L  G  V  C  R  M  S  K  *  *  A  H  Q  H  L  L  S  L  L  F  P  V  A  F  L  L  P  L  R  W  L  L  L  P  K  D  L  L  S  H  Q  K  I  Y  *  E  S  K  G  S  L  D  G  K  D  Q  Q  P  Q  V  H  F  V  R  L  S  Q  E  N  P  L  T  C  I  Q  I  P  *  P  S  L  L  L  K  L  P  P  A  S  M  V  D  L  H  *  I  L  I  *  M  *  L  M  K  E  F  W  R  I  *  I  L  R  I  V  L  *  Q  *  V  L  R  W  T  I  *  L  I  L  F  H  Q  K  I  N  V  Q  A  L  F  V  V  L  E  D  L  I  S  I  *  I  E  L  M  N  L  M  M  *  V  N  A  P  *  V  A  V  I  D  *  R  V  L  F  F  P  Q  E  H  L  H  P  V  S  C  Q  L  Q  K  *  G  G  T  L  I  *  I  M  G  L  V  L  M  I  H  V  Q  N  S  L  Y  S  T  R  V  I  R  E  T  C  A  P  N  *  M  L  L  A  S  E  *  T  I  Q  K  W  E  T  Y  H  L  G  L  L  Q  G  I  V  T  Q  R  *  Q  F  H  Q  C  C  L  I  G  G  S  S  H  H  F  Q  *  S  H  P  V  P  R  E  C  *  V  H  L  L  L  V  P  L  I  L  Q  M  F  S  G  V  R  Y  C  H  H  H  L  L  C  L  F  P  L  P  H  S  S  I  L  C  S  L  L  E  L  L  S  H  F  P  L  E  H  M  L  L  D  Q  P  L  I  L  I  H  P  R  V  E  D  F  S  L  R  L  *  I  H  S  C  *  V  L  W  H  L  N  T  Q  G  L  I  W  F  P  F  P  M  L  T  A  M  E  P  P  T  T  T  E  N  G  A  G  K  V  W  I  *  M  Q  V  L  E  L  W  T  W  K  G  K  K  S  Q  F  R  W  *  R  G  N  W  T  S  M  G  G  C  I  L  *  L  E  V  Y  *  R  G  R  N  P  R  E  D  G  T  V  R  V  T  G  S  S  N  H  R  G  S  R  N  A  K  K  P  A  T  W  R  S  *  S :   C  Q  R  M  D  Y  G  G  L  L  T  S  I  S  F  *  Y  A  L  V  V  V  *  C  D  Q  *  C  V  Q  S  P  T  T  I  S  L  N  V  *  K  E  G  G  F  Q  W  V  C  E  H  F  C  Q  P  Y  C  L  G  G  D  R  *  V  F  P  L  *  I  F  *  L  L  E  G  L  R  S  A  T  P  G  N  C  G  *  V  V  L  S  L  A  K  I  L  P  V  E  V  G  F  L  D  R  V  K  W  N  A  F  Y  V  L  C  C  *  *  S  F  L  L  P  T  F  L  A  V  L  S  S  F  L  A  I  T  *  V  *  R  G  *  H  Q  I  L  V  L  K  C  P  P  A  M  L  L   </first_frame>
            <second_frame>  C  F  S  P  R  R  *  P  F  R  W  G  D  L  H  R  *  *  A  *  A  K  D  I  S  C  R  *  F  F  R  *  P  *  W  A  K  *  R  *  C  *  W  *  *  R  E  T  V  R  C  C  *  Y  V  V  V  *  G  *  S  T  C  *  *  K  C  N  D  G  F  *  Q  R  K  K  A  L  F  I  S  F  *  R  N  N  H  G  R  V  L  *  F  I  L  H  *  F  T  D  G  W  K  F  E  I  R  C  *  *  E  V  S  *  D  G  K  V  C  C  G  S  L  Q  C  I  R  K  S  K  *  W  *  T  E  Q  T  I  P  *  G  K  S  N  F  H  *  D  T  *  *  C  S  R  W  R  I  R  W  T  W  *  F  N  R  R  G  Q  S  H  *  W  P  C  K  H  R  R  L  E  T  T  S  W  N  F  C  F  *  I  *  G  R  R  Q  K  *  C  E  *  G  V  R  C  C  *  Y  R  G  E  T  A  F  S  C  G  E  I  *  S  Y  R  K  R  *  Q  G  R  V  A  T  N  W  F  *  S  R  H  Y  C  R  E  R  W  T  F  *  *  N  G  C  K  *  C  F  K  V  R  T  A  K  F  *  *  K  D  C  *  Y  F  S  Y  *  G  *  S  R  I  *  M  *  F  S  Y  K  E  F  D  K  G  *  T  *  S  *  R  D  D  E  A  *  F  W  Q  W  I  T  Y  *  E  R  D  T  W  I  F  *  C  R  S  G  K  F  G  I  K  R  I  *  I  L  W  C  R  G  R  *  T  K  G  M  R  I  H  Q  R  G  K  F  F  K  L  C  C  C  C  P  R  F  S  F  K  D  E  V  *  L  K  *  R  F  Y  F  *  *  G  E  I  W  G  V  N  Q  L  D  R  P  W  V  F  V  E  C  P  N  N  E  P  I  N  I  C  C  L  F  C  F  Q  *  P  S  C  F  H  Y  G  G  C  C  C  Q  R  T  F  C  P  T  R  R  S  I  E  S  Q  R  G  V  W  M  E  R  I  S  S  H  K  C  I  S  S  G  *  A  K  K  T  P  *  H  A  F  K  F  H  D  H  L  C  Y  *  S  F  L  Q  Q  A  W  S  T  S  I  R  Y  *  S  E  C  S  *  *  K  S  F  G  G  Y  K  F  S  G  L  C  F  S  N  R  F  C  G  G  P  Y  N  *  S  C  F  I  K  K  *  M  F  R  P  S  S  *  F  W  R  T  *  S  R  F  E  *  S  *  *  T  *  *  C  R  S  M  L  L  E  *  Q  S  *  I  R  G  C  C  F  S  R  K  S  I  F  I  Q  Y  L  A  N  C  R  S  E  E  G  L  *  F  E  *  W  A  W  C  *  *  F  M  C  R  T  A  S  I  P  P  E  S  S  G  K  H  A  L  P  T  K  C  F  *  P  Q  N  E  Q  S  R  N  G  K  L  I  I  L  V  C  S  R  E  *  L  L  N  D  D  N  S  I  N  V  A  *  S  G  G  A  A  T  I  S  N  N  P  T  R  C  P  A  N  V  R  S  I  C  C  W  F  P  L  Y  S  R  C  F  Q  G  F  G  I  V  I  I  T  C  Y  A  F  S  R  C  P  I  P  V  S  C  V  P  F  W  N  Y  F  P  T  S  L  W  N  I  C  C  W  I  N  L  L  Y  *  F  I  L  G  W  K  T  F  H  S  A  Y  K  F  T  V  A  R  C  C  G  T  S  I  P  K  A  L  Y  G  F  P  S  R  C  *  Q  Q  W  S  H  R  P  Q  Q  K  T  E  P  A  R  S  G  S  E  C  R  S  W  S  C  G  L  G  R  E  R  R  V  S  F  V  G  N  E  A  T  G  R  A  W  E  D  V  S  C  S  W  R  S  T  E  E  E  G  T  R  G  R  M  G  Q  *  E  L  Q  V  Q  A  I  T  V  A  V  G  M  Q  K  N  L  Q  L  G  D  L  E   : V  V  K  G  W  T  M  V  G  S  S  Q  V  S  A  S  S  M  L  L  W  L  C  D  V  T  N  D  V  F  S  P  Q  P  L  F  L  S  M  Y  E  R  K  E  D  F  N  G  F  V  S  T  F  V  N  R  I  V  W  V  E  T  D  E  S  S  L  C  K  Y  F  N  C  W  K  A  *  D  L  Q  H  P  A  T  A  D  K  L  S  Y  R  W  P  R  Y  C  Q  W  R  L  D  F  W  T  E  *  N  G  M  P  S  M  F  F  V  A  N  D  L  S  C  S  L  L  S  W  L  F  S  P  L  F  W  Q  L  H  K  Y  K  E  V  D  T  K  F  W  Y  *  S  V  H  L  P  C  F  Y  </second_frame>
            <third_frame>   V  S  P  Q  G  D  S  P  S  G  G  E  T  C  T  G  D  E  L  K  P  K  T  S  P  V  D  S  S  S  G  N  H  S  G  R  N  D  G  D  A  N  G  D  K  E  K  Q  F  V  V  A  N  T  S  W  S  E  G  K  V  H  A  N  R  S  A  M  T  D  F  N  R  E  R  R  P  S  S  S  P  S  E  E  T  T  T  G  E  C  F  N  S  S  C  T  D  S  Q  M  A  G  N  L  K  S  G  V  N  E  K  L  V  E  M  A  K  S  A  A  A  P  C  N  V  F  E  K  A  S  D  G  E  Q  S  R  Q  F  H  E  E  K  V  I  S  T  K  T  L  D  N  V  L  D  G  E  S  G  G  H  G  S  S  I  G  E  D  K  V  T  N  G  L  V  S  I  E  G  L  K  R  P  V  G  I  S  A  F  K  Y  E  G  D  D  K  N  D  V  S  R  V  L  G  V  A  S  T  E  V  K  P  P  S  V  V  V  K  S  E  A  T  E  R  G  D  K  E  E  L  Q  Q  T  G  S  S  R  D  T  I  A  G  K  G  G  H  S  D  E  M  D  A  N  S  V  L  K  S  E  Q  P  N  S  D  K  K  T  V  D  T  S  V  I  E  D  K  A  A  S  E  C  N  L  A  I  R  N  L  T  K  D  E  P  K  A  E  E  M  T  K  H  D  S  G  S  G  L  L  T  K  K  E  T  P  G  F  S  N  A  E  V  E  N  L  E  S  R  E  S  K  Y  S  G  V  E  A  D  R  P  K  E  C  V  S  I  K  G  E  N  S  S  S  S  A  A  A  A  P  D  S  A  S  K  M  K  F  D  L  N  E  G  F  I  S  D  E  G  K  Y  G  E  S  I  N  S  T  G  P  G  C  L  S  N  V  Q  I  M  S  P  S  T  F  A  V  S  S  V  S  S  S  L  P  A  S  I  T  V  A  A  A  A  K  G  P  F  V  P  P  E  D  L  L  R  V  K  G  E  F  G  W  K  G  S  A  A  T  S  A  F  R  P  A  E  P  R  K  P  P  D  M  H  S  N  S  M  T  I  S  V  T  E  A  S  S  S  K  H  G  R  P  P  L  D  I  D  L  N  V  A  D  E  R  V  L  E  D  I  N  S  Q  D  C  A  L  A  I  G  S  A  V  D  H  I  T  N  L  V  S  S  K  N  K  C  S  G  P  L  R  S  F  G  G  L  D  L  D  L  N  R  V  D  E  P  N  D  V  G  Q  C  S  L  S  S  S  H  R  L  E  G  A  V  F  P  A  R  A  S  S  S  S  I  L  P  T  A  E  V  R  R  D  F  D  L  N  N  G  P  G  V  D  D  S  C  A  E  Q  P  L  F  H  Q  S  H  Q  G  N  M  R  S  Q  L  N  A  S  S  L  R  M  N  N  P  E  M  G  N  L  S  S  W  F  A  P  G  N  S  Y  S  T  M  T  I  P  S  M  L  P  D  R  G  E  Q  P  P  F  P  I  I  P  P  G  A  P  R  M  L  G  P  S  A  A  G  S  P  Y  T  P  D  V  F  R  G  S  V  L  S  S  S  P  A  M  P  F  P  A  A  P  F  Q  Y  P  V  F  P  F  G  T  T  F  P  L  P  S  G  T  Y  A  V  G  S  T  S  Y  I  D  S  S  S  G  G  R  L  F  T  P  P  I  N  S  Q  L  L  G  A  V  A  P  Q  Y  P  R  P  Y  M  V  S  L  P  D  A  N  S  N  G  A  T  D  H  N  R  K  R  S  R  Q  G  L  D  L  N  A  G  P  G  A  V  D  L  E  G  K  E  E  S  V  S  L  V  T  R  Q  L  D  E  H  G  R  M  Y  P  V  A  G  G  L  L  K  R  K  E  P  E  G  G  W  D  S  E  S  Y  R  F  K  Q  S  P  W  Q  *  E  C  K  K  T  C  N  L  A  I  L  K  :  L  S  K  D  G  L  W  W  A  P  H  K  Y  Q  L  L  V  C  S  C  G  C  V  M  *  P  M  M  C  S  V  P  N  H  Y  F  S  Q  C  M  K  G  R  R  I  S  M  G  L  *  A  L  L  S  T  V  L  S  G  W  R  Q  M  S  L  P  S  V  N  I  L  T  V  G  R  L  E  I  C  N  T  R  Q  L  R  I  S  C  L  I  V  G  Q  D  I  A  S  G  G  W  I  S  G  Q  S  K  M  E  C  L  L  C  S  L  L  L  M  I  F  L  A  P  Y  F  L  G  C  S  L  L  F  F  G  N  Y  I  S  I  K  R  L  T  P  N  F  G  T  K  V  S  T  C  H  A  F  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0197N20.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85518" stop="88028"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2508</number_coding_nucleotides>
                  <number_encoded_amino_acids>836</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSPQGDSPSGGETCTGDELKPKTSPVDSSSGNHSGRNDGDANGDKEKQFVVANTSWSEGKVHANRSAMTDFNRERRPSSSPSEETTTGECFNSSCTDSQMAGNLKSGVNEKLVEMAKSAAAPCNVFEKASDGEQSRQFHEEKVISTKTLDNVLDGESGGHGSSIGEDKVTNGLVSIEGLKRPVGISAFKYEGDDKNDVSRVLGVASTEVKPPSVVVKSEATERGDKEELQQTGSSRDTIAGKGGHSDEMDANSVLKSEQPNSDKKTVDTSVIEDKAASECNLAIRNLTKDEPKAEEMTKHDSGSGLLTKKETPGFSNAEVENLESRESKYSGVEADRPKECVSIKGENSSSSAAAAPDSASKMKFDLNEGFISDEGKYGESINSTGPGCLSNVQIMSPSTFAVSSVSSSLPASITVAAAAKGPFVPPEDLLRVKGEFGWKGSAATSAFRPAEPRKPPDMHSNSMTISVTEASSSKHGRPPLDIDLNVADERVLEDINSQDCALAIGSAVDHITNLVSSKNKCSGPLRSFGGLDLDLNRVDEPNDVGQCSLSSSHRLEGAVFPARASSSSILPTAEVRRDFDLNNGPGVDDSCAEQPLFHQSHQGNMRSQLNASSLRMNNPEMGNLSSWFAPGNSYSTMTIPSMLPDRGEQPPFPIIPPGAPRMLGPSAAGSPYTPDVFRGSVLSSSPAMPFPAAPFQYPVFPFGTTFPLPSGTYAVGSTSYIDSSSGGRLFTPPINSQLLGAVAPQYPRPYMVSLPDANSNGATDHNRKRSRQGLDLNAGPGAVDLEGKEESVSLVTRQLDEHGRMYPVAGGLLKRKEPEGGWDSESYRFKQSPWQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0197N20.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88812" stop="89129"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALLSTVLSGWRQMSLPSVNILTVGRLEICNTRQLRISCLIVGQDIASGGWISGQSKMECLLCSLLLMIFLAPYFLGCSLLFFGNYISIKRLTPNFGTKVSTCHAFI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="90997" PGL_stop="90155"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90997" e_stop="90155"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90997" e_stop="90155" e_length="843"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90997" stop="90155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328474" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTCTTCCTCCTCCTTCTCTAATCACCAGCCAATGCATTAACCCATATTTCAATGGCAGGTTCTGAATTTCCTCACGCATATCCACAAACGCCAAGTATCGATACTTCCGAAACGCTATTTCAACGACGTAGCCGTTGTTTCTGCTTCCCATCTTTCCGTTCTCCGAATCAATTAACAAAATACGTTAAGTTTGACTGGTGGCATAGGTTACGTAGCGGTGCGGTTAAGGAGGGATCTGTATGGGCTAAAGGAATCAACGCTTTGAAGAAGCTTCGTGAATGGTCGGAGATCGTCGCCGGACCTAGATGGAAGACTTTCATCCGTCGGTTCCATCGGAACAAAAGCGGTAATAGGAATGCGAAATTCCAATACGATCCTTTGAGTTACTCACTGAACTTCGATGAAGGACGAGGGAATAACGGAGAAGAGGAGGAGGAATTGGTACTTCGGAATTTCTCGACGAGATACGCATCGATTCCGGCGTCTAGTAACTTGGGCAAAGATGGGCCCAGTTTCGTTTGAGTTGCAAACGCAAGTACTATACTATTTGACAGTGATTGGACTGGACCGATCGATAAATTTATATTATCGTCAATCATAAATTAGTCTCAGCGTATAATTTCGAGACAATTCAATCCCCCTTACAGTTCAGTAGTGGGGCAAAGAAAACAACAGCTCATCATAAAAGATAAGTTTTCTACCAACAAAAAAAATATTATTGTGGTTGGTCTTATTTGTCTAATGTCTTTTTCGTTGTTTAATTTAATTTACTTCTCTTGTCTCTACTTGTTTTTGTCTTTATGCACTGTAAATACAATATCCATTTTTTTTGTGTGATA</gDNA_template>
            <first_frame> F  F  L  P  P  P  S  L  I  T  S  Q  C  I  N  P  Y  F  N  G  R  F  *  I  S  S  R  I  S  T  N  A  K  Y  R  Y  F  R  N  A  I  S  T  T  *  P  L  F  L  L  P  I  F  P  F  S  E  S  I  N  K  I  R  *  V  *  L  V  A  *  V  T  *  R  C  G  *  G  G  I  C  M  G  *  R  N  Q  R  F  E  E  A  S  *  M  V  G  D  R  R  R  T  *  M  E  D  F  H  P  S  V  P  S  E  Q  K  R  *  *  E  C  E  I  P  I  R  S  F  E  L  L  T  E  L  R  *  R  T  R  E  *  R  R  R  G  G  G  I  G  T  S  E  F  L  D  E  I  R  I  D  S  G  V  *  *  L  G  Q  R  W  A  Q  F  R  L  S  C  K  R  K  Y  Y  T  I  *  Q  *  L  D  W  T  D  R  *  I  Y  I  I  V  N  H  K  L  V  S  A  Y  N  F  E  T  I  Q  S  P  L  Q  F  S  S  G  A  K  K  T  T  A  H  H  K  R  *  V  F  Y  Q  Q  K  K  Y  Y  C  G  W  S  Y  L  S  N  V  F  F  V  V  *  F  N  L  L  L  L  S  L  L  V  F  V  F  M  H  C  K  Y  N  I  H  F  F  C  V  I </first_frame>
            <second_frame>  F  F  F  L  L  L  L  *  S  P  A  N  A  L  T  H  I  S  M  A  G  S  E  F  P  H  A  Y  P  Q  T  P  S  I  D  T  S  E  T  L  F  Q  R  R  S  R  C  F  C  F  P  S  F  R  S  P  N  Q  L  T  K  Y  V  K  F  D  W  W  H  R  L  R  S  G  A  V  K  E  G  S  V  W  A  K  G  I  N  A  L  K  K  L  R  E  W  S  E  I  V  A  G  P  R  W  K  T  F  I  R  R  F  H  R  N  K  S  G  N  R  N  A  K  F  Q  Y  D  P  L  S  Y  S  L  N  F  D  E  G  R  G  N  N  G  E  E  E  E  E  L  V  L  R  N  F  S  T  R  Y  A  S  I  P  A  S  S  N  L  G  K  D  G  P  S  F  V  *  V  A  N  A  S  T  I  L  F  D  S  D  W  T  G  P  I  D  K  F  I  L  S  S  I  I  N  *  S  Q  R  I  I  S  R  Q  F  N  P  P  Y  S  S  V  V  G  Q  R  K  Q  Q  L  I  I  K  D  K  F  S  T  N  K  K  N  I  I  V  V  G  L  I  C  L  M  S  F  S  L  F  N  L  I  Y  F  S  C  L  Y  L  F  L  S  L  C  T  V  N  T  I  S  I  F  F  V  *   </second_frame>
            <third_frame>   F  S  S  S  S  F  S  N  H  Q  P  M  H  *  P  I  F  Q  W  Q  V  L  N  F  L  T  H  I  H  K  R  Q  V  S  I  L  P  K  R  Y  F  N  D  V  A  V  V  S  A  S  H  L  S  V  L  R  I  N  *  Q  N  T  L  S  L  T  G  G  I  G  Y  V  A  V  R  L  R  R  D  L  Y  G  L  K  E  S  T  L  *  R  S  F  V  N  G  R  R  S  S  P  D  L  D  G  R  L  S  S  V  G  S  I  G  T  K  A  V  I  G  M  R  N  S  N  T  I  L  *  V  T  H  *  T  S  M  K  D  E  G  I  T  E  K  R  R  R  N  W  Y  F  G  I  S  R  R  D  T  H  R  F  R  R  L  V  T  W  A  K  M  G  P  V  S  F  E  L  Q  T  Q  V  L  Y  Y  L  T  V  I  G  L  D  R  S  I  N  L  Y  Y  R  Q  S  *  I  S  L  S  V  *  F  R  D  N  S  I  P  L  T  V  Q  *  W  G  K  E  N  N  S  S  S  *  K  I  S  F  L  P  T  K  K  I  L  L  W  L  V  L  F  V  *  C  L  F  R  C  L  I  *  F  T  S  L  V  S  T  C  F  C  L  Y  A  L  *  I  Q  Y  P  F  F  L  C  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0197N20.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90972" stop="90472"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPANALTHISMAGSEFPHAYPQTPSIDTSETLFQRRSRCFCFPSFRSPNQLTKYVKFDWWHRLRSGAVKEGSVWAKGINALKKLREWSEIVAGPRWKTFIRRFHRNKSGNRNAKFQYDPLSYSLNFDEGRGNNGEEEEELVLRNFSTRYASIPASSNLGKDGPSFV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0197N20.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90387" stop="90157"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQRIISRQFNPPYSSVVGQRKQQLIIKDKFSTNKKNIIVVGLICLMSFSLFNLIYFSCLYLFLSLCTVNTISIFFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="91690" PGL_stop="94819"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91690" e_stop="92097"/>
            <exon e_start="92672" e_stop="92752"/>
            <exon e_start="94025" e_stop="94164"/>
            <exon e_start="94252" e_stop="94819"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.863" acc_prob="0.985" e_score="0.998"/>
          <exon-intron don_prob="0.862" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="91690" e_stop="92097" e_length="408"/>
          </exon>
          <intron i_serial="1" don_prob="0.863" acc_prob="0.985">
            <gDNA_intron_boundary i_start="92098" i_stop="92671" i_length="574"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92672" e_stop="92752" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.862" acc_prob="0.944">
            <gDNA_intron_boundary i_start="92753" i_stop="94024" i_length="1272"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94025" e_stop="94164" e_length="140"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="94165" i_stop="94251" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="94252" e_stop="94819" e_length="568"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91690" stop="92097"/>
              <exon start="92672" stop="92752"/>
              <exon start="94025" stop="94164"/>
              <exon start="94252" stop="94819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327480" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCAACGAACGATCAAATTTTTTTTTGCTTTGTAGAGATTGTTTCACTGTATATGCACAGGTATTGCGGCGGAATTCTGAAAATAAACAGAGATGCCAGGGCCGGGACCGCATATGATGTATACATTGGGTTCAGGATTAGGATTGATGAGTGTATCTAATGGCCGGTTTAGTCCTCATCACTGCGTTACCTATTCCATCAACGCTTTCTTTGGACCGGACATTGGATCTTTCTCTGAGTGGCTTACATCAACCCTTGGGTTAGGAAGTGCTTTGGGTTATGCAATTGAGCCCTGGATCCATGACCCCTTTTATCATATACTTATTCTTGGTATCCCCATGTCCATGCTTTACAGCGCTCTCTCCAAATTTCTCCTAAAGAAGGGATTGCTCGATTCCATTTCAGGG : GTTCCGCTTACAAGGAAACAGTGTCTTTTCCTGGTGGCTGCTGGCTCTTTGTCACATTTTTTCTTGGACCATTTGTTTGAG : GAAAATGGGAAGTCTACTATGTACACTTGGATATTGAGCACAGGTTGGTGGGAAGGGCGCGCACCAATCAATCTCGATGCTGTTGTTGTGGTTTGCATTCTATGTAGCTGCTTGATTGCTGACTTTATATACATAAACAG : AGTGAAGCCGCTCAAACTGCTCAAACTACGAGTTATCAACTCTGTCAAACTGATCTTGGTAATTGCTTCCTTATACTGTTTATGGTGTGCAACCCAAATATACTTGGTTCAACCTCGTCGGCCAGCAGTTGGTGAAGAGGCTGATCTTGGAGTTCTTGTGTTTATGACAATATATTTTTTCCTCCCTCATTGGCTATGCATTCAGTCCATGAACTCAAGAGATCCCCAAGATCTTTTGCCCTTATGACTACATGAAATGCATAGTGACTAGTGACATAAAAAATCTCAAGGCTATAATTGATTGAACCCAAGTCCAGCAACATTTTGTAGAGGAGCTGAACTAGTCAATTTTCGCCGTTCCATTGCAGCATATGTTGCTCTTTAAGGTTCCTGGTATCATCTAGGCATAGATTTACCTTGCTTTCCTGGCTCCACAAAGTGTAGAGAGAGTGATTTTGGAGCTGCATCCTTTCTTCCTGGGGATGATAAGTTAACTGTATGGTATCGAAAAAACGTTGACGTTATAAGGTTTTGTTGATAAAAAATAACTTATGCTAGCTCATATTTA</gDNA_template>
            <first_frame> F  Q  R  T  I  K  F  F  F  A  L  *  R  L  F  H  C  I  C  T  G  I  A  A  E  F  *  K  *  T  E  M  P  G  P  G  P  H  M  M  Y  T  L  G  S  G  L  G  L  M  S  V  S  N  G  R  F  S  P  H  H  C  V  T  Y  S  I  N  A  F  F  G  P  D  I  G  S  F  S  E  W  L  T  S  T  L  G  L  G  S  A  L  G  Y  A  I  E  P  W  I  H  D  P  F  Y  H  I  L  I  L  G  I  P  M  S  M  L  Y  S  A  L  S  K  F  L  L  K  K  G  L  L  D  S  I  S  G  :  V  P  L  T  R  K  Q  C  L  F  L  V  A  A  G  S  L  S  H  F  F  L  D  H  L  F  E  :  E  N  G  K  S  T  M  Y  T  W  I  L  S  T  G  W  W  E  G  R  A  P  I  N  L  D  A  V  V  V  V  C  I  L  C  S  C  L  I  A  D  F  I  Y  I  N  R :   V  K  P  L  K  L  L  K  L  R  V  I  N  S  V  K  L  I  L  V  I  A  S  L  Y  C  L  W  C  A  T  Q  I  Y  L  V  Q  P  R  R  P  A  V  G  E  E  A  D  L  G  V  L  V  F  M  T  I  Y  F  F  L  P  H  W  L  C  I  Q  S  M  N  S  R  D  P  Q  D  L  L  P  L  *  L  H  E  M  H  S  D  *  *  H  K  K  S  Q  G  Y  N  *  L  N  P  S  P  A  T  F  C  R  G  A  E  L  V  N  F  R  R  S  I  A  A  Y  V  A  L  *  G  S  W  Y  H  L  G  I  D  L  P  C  F  P  G  S  T  K  C  R  E  S  D  F  G  A  A  S  F  L  P  G  D  D  K  L  T  V  W  Y  R  K  N  V  D  V  I  R  F  C  *  *  K  I  T  Y  A  S  S  Y  L </first_frame>
            <second_frame>  F  N  E  R  S  N  F  F  L  L  C  R  D  C  F  T  V  Y  A  Q  V  L  R  R  N  S  E  N  K  Q  R  C  Q  G  R  D  R  I  *  C  I  H  W  V  Q  D  *  D  *  *  V  Y  L  M  A  G  L  V  L  I  T  A  L  P  I  P  S  T  L  S  L  D  R  T  L  D  L  S  L  S  G  L  H  Q  P  L  G  *  E  V  L  W  V  M  Q  L  S  P  G  S  M  T  P  F  I  I  Y  L  F  L  V  S  P  C  P  C  F  T  A  L  S  P  N  F  S  *  R  R  D  C  S  I  P  F  Q  G :   F  R  L  Q  G  N  S  V  F  S  W  W  L  L  A  L  C  H  I  F  S  W  T  I  C  L  R :   K  M  G  S  L  L  C  T  L  G  Y  *  A  Q  V  G  G  K  G  A  H  Q  S  I  S  M  L  L  L  W  F  A  F  Y  V  A  A  *  L  L  T  L  Y  T  *  T   : E  *  S  R  S  N  C  S  N  Y  E  L  S  T  L  S  N  *  S  W  *  L  L  P  Y  T  V  Y  G  V  Q  P  K  Y  T  W  F  N  L  V  G  Q  Q  L  V  K  R  L  I  L  E  F  L  C  L  *  Q  Y  I  F  S  S  L  I  G  Y  A  F  S  P  *  T  Q  E  I  P  K  I  F  C  P  Y  D  Y  M  K  C  I  V  T  S  D  I  K  N  L  K  A  I  I  D  *  T  Q  V  Q  Q  H  F  V  E  E  L  N  *  S  I  F  A  V  P  L  Q  H  M  L  L  F  K  V  P  G  I  I  *  A  *  I  Y  L  A  F  L  A  P  Q  S  V  E  R  V  I  L  E  L  H  P  F  F  L  G  M  I  S  *  L  Y  G  I  E  K  T  L  T  L  *  G  F  V  D  K  K  *  L  M  L  A  H  I   </second_frame>
            <third_frame>   S  T  N  D  Q  I  F  F  C  F  V  E  I  V  S  L  Y  M  H  R  Y  C  G  G  I  L  K  I  N  R  D  A  R  A  G  T  A  Y  D  V  Y  I  G  F  R  I  R  I  D  E  C  I  *  W  P  V  *  S  S  S  L  R  Y  L  F  H  Q  R  F  L  W  T  G  H  W  I  F  L  *  V  A  Y  I  N  P  W  V  R  K  C  F  G  L  C  N  *  A  L  D  P  *  P  L  L  S  Y  T  Y  S  W  Y  P  H  V  H  A  L  Q  R  S  L  Q  I  S  P  K  E  G  I  A  R  F  H  F  R   : G  S  A  Y  K  E  T  V  S  F  P  G  G  C  W  L  F  V  T  F  F  L  G  P  F  V  *   : G  K  W  E  V  Y  Y  V  H  L  D  I  E  H  R  L  V  G  R  A  R  T  N  Q  S  R  C  C  C  C  G  L  H  S  M  *  L  L  D  C  *  L  Y  I  H  K  Q  :  S  E  A  A  Q  T  A  Q  T  T  S  Y  Q  L  C  Q  T  D  L  G  N  C  F  L  I  L  F  M  V  C  N  P  N  I  L  G  S  T  S  S  A  S  S  W  *  R  G  *  S  W  S  S  C  V  Y  D  N  I  F  F  P  P  S  L  A  M  H  S  V  H  E  L  K  R  S  P  R  S  F  A  L  M  T  T  *  N  A  *  *  L  V  T  *  K  I  S  R  L  *  L  I  E  P  K  S  S  N  I  L  *  R  S  *  T  S  Q  F  S  P  F  H  C  S  I  C  C  S  L  R  F  L  V  S  S  R  H  R  F  T  L  L  S  W  L  H  K  V  *  R  E  *  F  W  S  C  I  L  S  S  W  G  *  *  V  N  C  M  V  S  K  K  R  *  R  Y  K  V  L  L  I  K  N  N  L  C  *  L  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0197N20.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91777" stop="92097"/>
                    <exon start="92672" stop="92752"/>
                    <exon start="94025" stop="94164"/>
                    <exon start="94252" stop="94498"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TEMPGPGPHMMYTLGSGLGLMSVSNGRFSPHHCVTYSINAFFGPDIGSFSEWLTSTLGLGSALGYAIEPWIHDPFYHILILGIPMSMLYSALSKFLLKKGLLDSISGVPLTRKQCLFLVAAGSLSHFFLDHLFEENGKSTMYTWILSTGWWEGRAPINLDAVVVVCILCSCLIADFIYINRVKPLKLLKLRVINSVKLILVIASLYCLWCATQIYLVQPRRPAVGEEADLGVLVFMTIYFFLPHWLCIQSMNSRDPQDLLPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="95984" PGL_stop="98258"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95984" e_stop="96351"/>
            <exon e_start="96518" e_stop="96620"/>
            <exon e_start="98009" e_stop="98258"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.961" e_score="0.986"/>
          <exon-intron don_prob="1.000" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="95984" e_stop="96351" e_length="368"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.961">
            <gDNA_intron_boundary i_start="96352" i_stop="96517" i_length="166"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96518" e_stop="96620" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="96621" i_stop="98008" i_length="1388"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="98009" e_stop="98258" e_length="250"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95984" stop="96351"/>
              <exon start="96518" stop="96620"/>
              <exon start="98009" stop="98258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342803" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTACCTTTCCTATAGTTTTGTAATTTAGGAATTTCTGATTTTAGAAAGTAACTTCCATGGATAGGGTAAGTGCTTGTTATATGAGAAAAAGTTGTTATGTGTTTATTTTCTTTAGACAAATAATTGTCCGCTCAAAATACAAAGTAGAATCGAAAGAAATTAAATTTATGATTTCTATTATATAAATATAATAATTGAGATAATAGAGAAGCAAAAATAACAAAACGAAAAGCACCAAAGAAAAAATTCAGATCGGTTTAAATAGTTGCCCCCATTCCCAAGAAAACCTCGTGAGTTTAAATATAAAGTTTCCTTCCAGAGCCCAGAAAAATTAGCCATCCGTTAATCGTCCATTTTTGCAGCAGACT : TAAATCATAATGGCAACCGAACAACCAAAACCAGCAACTGTAGATGTGAAAATGGATCTGTTTGAGGACGATGACGAATTTGAAGAGTTTGACATTGATCAAG : AGTGGGAGTCGAAAAAGGAAGGGAAAGAAGCTACCCAGCAGTGGGAAGATGATTGGGATGATGATGATGTCAATGATGATTTCTCTTTACAACTGAAAAGGGAACTGGAAAGCAACACGGAGAAGAAATAACCAAACCTTCACAGGATTGTTTCTCTTTCTCAAGATTTAACCACAGATATCTGTTTGCGTTCATATATTTCCCATTATGTAGCACTCTTTGTTTCACCAAACGCGATGAACGTCAGTTT</gDNA_template>
            <first_frame> L  P  F  L  *  F  C  N  L  G  I  S  D  F  R  K  *  L  P  W  I  G  *  V  L  V  I  *  E  K  V  V  M  C  L  F  S  L  D  K  *  L  S  A  Q  N  T  K  *  N  R  K  K  L  N  L  *  F  L  L  Y  K  Y  N  N  *  D  N  R  E  A  K  I  T  K  R  K  A  P  K  K  K  F  R  S  V  *  I  V  A  P  I  P  K  K  T  S  *  V  *  I  *  S  F  L  P  E  P  R  K  I  S  H  P  L  I  V  H  F  C  S  R  L :   K  S  *  W  Q  P  N  N  Q  N  Q  Q  L  *  M  *  K  W  I  C  L  R  T  M  T  N  L  K  S  L  T  L  I  K  :  S  G  S  R  K  R  K  G  K  K  L  P  S  S  G  K  M  I  G  M  M  M  M  S  M  M  I  S  L  Y  N  *  K  G  N  W  K  A  T  R  R  R  N  N  Q  T  F  T  G  L  F  L  F  L  K  I  *  P  Q  I  S  V  C  V  H  I  F  P  I  M  *  H  S  L  F  H  Q  T  R  *  T  S  V  </first_frame>
            <second_frame>  Y  L  S  Y  S  F  V  I  *  E  F  L  I  L  E  S  N  F  H  G  *  G  K  C  L  L  Y  E  K  K  L  L  C  V  Y  F  L  *  T  N  N  C  P  L  K  I  Q  S  R  I  E  R  N  *  I  Y  D  F  Y  Y  I  N  I  I  I  E  I  I  E  K  Q  K  *  Q  N  E  K  H  Q  R  K  N  S  D  R  F  K  *  L  P  P  F  P  R  K  P  R  E  F  K  Y  K  V  S  F  Q  S  P  E  K  L  A  I  R  *  S  S  I  F  A  A  D   : L  N  H  N  G  N  R  T  T  K  T  S  N  C  R  C  E  N  G  S  V  *  G  R  *  R  I  *  R  V  *  H  *  S  R :   V  G  V  E  K  G  R  E  R  S  Y  P  A  V  G  R  *  L  G  *  *  *  C  Q  *  *  F  L  F  T  T  E  K  G  T  G  K  Q  H  G  E  E  I  T  K  P  S  Q  D  C  F  S  F  S  R  F  N  H  R  Y  L  F  A  F  I  Y  F  P  L  C  S  T  L  C  F  T  K  R  D  E  R  Q  F </second_frame>
            <third_frame>   T  F  P  I  V  L  *  F  R  N  F  *  F  *  K  V  T  S  M  D  R  V  S  A  C  Y  M  R  K  S  C  Y  V  F  I  F  F  R  Q  I  I  V  R  S  K  Y  K  V  E  S  K  E  I  K  F  M  I  S  I  I  *  I  *  *  L  R  *  *  R  S  K  N  N  K  T  K  S  T  K  E  K  I  Q  I  G  L  N  S  C  P  H  S  Q  E  N  L  V  S  L  N  I  K  F  P  S  R  A  Q  K  N  *  P  S  V  N  R  P  F  L  Q  Q  T  :  *  I  I  M  A  T  E  Q  P  K  P  A  T  V  D  V  K  M  D  L  F  E  D  D  D  E  F  E  E  F  D  I  D  Q   : E  W  E  S  K  K  E  G  K  E  A  T  Q  Q  W  E  D  D  W  D  D  D  D  V  N  D  D  F  S  L  Q  L  K  R  E  L  E  S  N  T  E  K  K  *  P  N  L  H  R  I  V  S  L  S  Q  D  L  T  T  D  I  C  L  R  S  Y  I  S  H  Y  V  A  L  F  V  S  P  N  A  M  N  V  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0197N20.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96521" stop="96620"/>
                    <exon start="98009" stop="98139"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIMATEQPKPATVDVKMDLFEDDDEFEEFDIDQEWESKKEGKEATQQWEDDWDDDDVNDDFSLQLKRELESNTEKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="98564" PGL_stop="100373"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98626" e_stop="98850"/>
            <exon e_start="98956" e_stop="99172"/>
            <exon e_start="99267" e_stop="99428"/>
            <exon e_start="99523" e_stop="99642"/>
            <exon e_start="99749" e_stop="99754"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.577" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.998" e_score="0.983"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98626" e_stop="98850" e_length="225"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="98851" i_stop="98955" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98956" e_stop="99172" e_length="217"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.577">
            <gDNA_intron_boundary i_start="99173" i_stop="99266" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="99267" e_stop="99428" e_length="162"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="99429" i_stop="99522" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="99523" e_stop="99642" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.998">
            <gDNA_intron_boundary i_start="99643" i_stop="99748" i_length="106"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="99749" e_stop="99754" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98626" stop="98850"/>
              <exon start="98956" stop="99172"/>
              <exon start="99267" stop="99428"/>
              <exon start="99523" stop="99642"/>
              <exon start="99749" stop="99754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98639" stop="98850"/>
              <exon start="98956" stop="99172"/>
              <exon start="99267" stop="99408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGTTTGGATGCGTGGCTGCCTAAAACCAAAAAAAAACAATAAAACAATAACAGCCTCCATGCAAATCGCAATTTTCAATAATTAATAATACTTGCCATCTCCTAGCAATAAAATTCGTAATTCTAAAGTTAAAAAAATTTAAAGATGGCAGATCCAGACACCACTAGGACGGTTGTAGGAATCATTGGTAATGTCATATCTTTCTTCCTCTTCTTGTCCCCAGG : GCCAACATTTGTCCAGATTTTGAAAGCAAAGTCAGTGATGGAATTCAAGCCAGATCCTTATATAGCAACAGTTTTGAATTGTGCAGTTTGGGTGTTTTATGGCATGCCATTTGTTCACCCTGACAGTCTTCTTGTCATCACCATTAACGGATTTGGTCTTGCTATTGAGTTACTCTACGTCTCAATCTTCTTCATCTACTCCGATTGGTCTAAGCGA : CAAAAGATCATAATTGCTTTGGTTATTGAAGCAATCTTCATGGCAATCCTCATCTTTGTTACATTAACATTCCTCCATGGAACCAAGGATAGATCAATGCTTATCGGGATTGTGGCTATAGTCTTCAATATCATCATGTACACCTCACCACTGACCGTCATG : AAGAAGGTGATCACCACCAAGAGTGTAAAATACATGCCATTTTACTTGTCACTAGCAAACTTTGCTAATGGCATTGTTTGGGCATGCTATGCACTCCTCAAATTTGATCCTTATATCCTG : ATCCCC</gDNA_template>
            <first_frame> L  F  G  C  V  A  A  *  N  Q  K  K  T  I  K  Q  *  Q  P  P  C  K  S  Q  F  S  I  I  N  N  T  C  H  L  L  A  I  K  F  V  I  L  K  L  K  K  F  K  D  G  R  S  R  H  H  *  D  G  C  R  N  H  W  *  C  H  I  F  L  P  L  L  V  P  R  :  A  N  I  C  P  D  F  E  S  K  V  S  D  G  I  Q  A  R  S  L  Y  S  N  S  F  E  L  C  S  L  G  V  L  W  H  A  I  C  S  P  *  Q  S  S  C  H  H  H  *  R  I  W  S  C  Y  *  V  T  L  R  L  N  L  L  H  L  L  R  L  V  *  A   : T  K  D  H  N  C  F  G  Y  *  S  N  L  H  G  N  P  H  L  C  Y  I  N  I  P  P  W  N  Q  G  *  I  N  A  Y  R  D  C  G  Y  S  L  Q  Y  H  H  V  H  L  T  T  D  R  H   : E  E  G  D  H  H  Q  E  C  K  I  H  A  I  L  L  V  T  S  K  L  C  *  W  H  C  L  G  M  L  C  T  P  Q  I  *  S  L  Y  P   : D  P  </first_frame>
            <second_frame>  C  L  D  A  W  L  P  K  T  K  K  K  Q  *  N  N  N  S  L  H  A  N  R  N  F  Q  *  L  I  I  L  A  I  S  *  Q  *  N  S  *  F  *  S  *  K  N  L  K  M  A  D  P  D  T  T  R  T  V  V  G  I  I  G  N  V  I  S  F  F  L  F  L  S  P  G :   P  T  F  V  Q  I  L  K  A  K  S  V  M  E  F  K  P  D  P  Y  I  A  T  V  L  N  C  A  V  W  V  F  Y  G  M  P  F  V  H  P  D  S  L  L  V  I  T  I  N  G  F  G  L  A  I  E  L  L  Y  V  S  I  F  F  I  Y  S  D  W  S  K  R  :  Q  K  I  I  I  A  L  V  I  E  A  I  F  M  A  I  L  I  F  V  T  L  T  F  L  H  G  T  K  D  R  S  M  L  I  G  I  V  A  I  V  F  N  I  I  M  Y  T  S  P  L  T  V  M  :  K  K  V  I  T  T  K  S  V  K  Y  M  P  F  Y  L  S  L  A  N  F  A  N  G  I  V  W  A  C  Y  A  L  L  K  F  D  P  Y  I  L  :  I  P </second_frame>
            <third_frame>   V  W  M  R  G  C  L  K  P  K  K  N  N  K  T  I  T  A  S  M  Q  I  A  I  F  N  N  *  *  Y  L  P  S  P  S  N  K  I  R  N  S  K  V  K  K  I  *  R  W  Q  I  Q  T  P  L  G  R  L  *  E  S  L  V  M  S  Y  L  S  S  S  S  C  P  Q   : G  Q  H  L  S  R  F  *  K  Q  S  Q  *  W  N  S  S  Q  I  L  I  *  Q  Q  F  *  I  V  Q  F  G  C  F  M  A  C  H  L  F  T  L  T  V  F  L  S  S  P  L  T  D  L  V  L  L  L  S  Y  S  T  S  Q  S  S  S  S  T  P  I  G  L  S  D :   K  R  S  *  L  L  W  L  L  K  Q  S  S  W  Q  S  S  S  L  L  H  *  H  S  S  M  E  P  R  I  D  Q  C  L  S  G  L  W  L  *  S  S  I  S  S  C  T  P  H  H  *  P  S  * :   R  R  *  S  P  P  R  V  *  N  T  C  H  F  T  C  H  *  Q  T  L  L  M  A  L  F  G  H  A  M  H  S  S  N  L  I  L  I  S  * :   S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0197N20.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98759" stop="98850"/>
                    <exon start="98956" stop="99172"/>
                    <exon start="99267" stop="99428"/>
                    <exon start="99523" stop="99642"/>
                    <exon start="99749" stop="99754"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNLKMADPDTTRTVVGIIGNVISFFLFLSPGPTFVQILKAKSVMEFKPDPYIATVLNCAVWVFYGMPFVHPDSLLVITINGFGLAIELLYVSIFFIYSDWSKRQKIIIALVIEAIFMAILIFVTLTFLHGTKDRSMLIGIVAIVFNIIMYTSPLTVMKKVITTKSVKYMPFYLSLANFANGIVWACYALLKFDPYILIP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="98634" e_stop="99172"/>
            <exon e_start="99267" e_stop="99428"/>
            <exon e_start="99523" e_stop="99642"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.577" e_score="0.891"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.981"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.891">
            <gDNA_exon_boundary e_start="98634" e_stop="99172" e_length="539"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.577">
            <gDNA_intron_boundary i_start="99173" i_stop="99266" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="99267" e_stop="99428" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="99429" i_stop="99522" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="99523" e_stop="99642" e_length="120"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98634" stop="99172"/>
              <exon start="99267" stop="99428"/>
              <exon start="99523" stop="99642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313645" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGCGTGGCTGCCTAAAACCAAAAAAAAACAATAAAACAATAACAGCCTCCATGCAAATCGCAATTTTCAATAATTAATAATACTTGCCATCTCCTAGCAATAAAATTCGTAATTCTAAAGTTAAAAAAATTTAAAGATGGCAGATCCAGACACCACTAGGACGGTTGTAGGAATCATTGGTAATGTCATATCTTTCTTCCTCTTCTTGTCCCCAGGGTAAGTTTCATCTCTAATCTCTTCTTCGCGATCGATTAATTTAATTCTCTCCTTACTCAAGGCTCAAAAAAATAAAAAATTATCGCTATTTATGATGTTTCGCAGGCCAACATTTGTCCAGATTTTGAAAGCAAAGTCAGTGATGGAATTCAAGCCAGATCCTTATATAGCAACAGTTTTGAATTGTGCAGTTTGGGTGTTTTATGGCATGCCATTTGTTCACCCTGACAGTCTTCTTGTCATCACCATTAACGGATTTGGTCTTGCTATTGAGTTACTCTACGTCTCAATCTTCTTCATCTACTCCGATTGGTCTAAGCGA : CAAAAGATCATAATTGCTTTGGTTATTGAAGCAATCTTCATGGCAATCCTCATCTTTGTTACATTAACATTCCTCCATGGAACCAAGGATAGATCAATGCTTATCGGGATTGTGGCTATAGTCTTCAATATCATCATGTACACCTCACCACTGACCGTCATG : AAGAAGGTGATCACCACCAAGAGTGTAAAATACATGCCATTTTACTTGTCACTAGCAAACTTTGCTAATGGCATTGTTTGGGCATGCTATGCACTCCTCAAATTTGATCCTTATATCCTG</gDNA_template>
            <first_frame> M  R  G  C  L  K  P  K  K  N  N  K  T  I  T  A  S  M  Q  I  A  I  F  N  N  *  *  Y  L  P  S  P  S  N  K  I  R  N  S  K  V  K  K  I  *  R  W  Q  I  Q  T  P  L  G  R  L  *  E  S  L  V  M  S  Y  L  S  S  S  S  C  P  Q  G  K  F  H  L  *  S  L  L  R  D  R  L  I  *  F  S  P  Y  S  R  L  K  K  I  K  N  Y  R  Y  L  *  C  F  A  G  Q  H  L  S  R  F  *  K  Q  S  Q  *  W  N  S  S  Q  I  L  I  *  Q  Q  F  *  I  V  Q  F  G  C  F  M  A  C  H  L  F  T  L  T  V  F  L  S  S  P  L  T  D  L  V  L  L  L  S  Y  S  T  S  Q  S  S  S  S  T  P  I  G  L  S  D :   K  R  S  *  L  L  W  L  L  K  Q  S  S  W  Q  S  S  S  L  L  H  *  H  S  S  M  E  P  R  I  D  Q  C  L  S  G  L  W  L  *  S  S  I  S  S  C  T  P  H  H  *  P  S  * :   R  R  *  S  P  P  R  V  *  N  T  C  H  F  T  C  H  *  Q  T  L  L  M  A  L  F  G  H  A  M  H  S  S  N  L  I  L  I  S   </first_frame>
            <second_frame>  C  V  A  A  *  N  Q  K  K  T  I  K  Q  *  Q  P  P  C  K  S  Q  F  S  I  I  N  N  T  C  H  L  L  A  I  K  F  V  I  L  K  L  K  K  F  K  D  G  R  S  R  H  H  *  D  G  C  R  N  H  W  *  C  H  I  F  L  P  L  L  V  P  R  V  S  F  I  S  N  L  F  F  A  I  D  *  F  N  S  L  L  T  Q  G  S  K  K  *  K  I  I  A  I  Y  D  V  S  Q  A  N  I  C  P  D  F  E  S  K  V  S  D  G  I  Q  A  R  S  L  Y  S  N  S  F  E  L  C  S  L  G  V  L  W  H  A  I  C  S  P  *  Q  S  S  C  H  H  H  *  R  I  W  S  C  Y  *  V  T  L  R  L  N  L  L  H  L  L  R  L  V  *  A   : T  K  D  H  N  C  F  G  Y  *  S  N  L  H  G  N  P  H  L  C  Y  I  N  I  P  P  W  N  Q  G  *  I  N  A  Y  R  D  C  G  Y  S  L  Q  Y  H  H  V  H  L  T  T  D  R  H   : E  E  G  D  H  H  Q  E  C  K  I  H  A  I  L  L  V  T  S  K  L  C  *  W  H  C  L  G  M  L  C  T  P  Q  I  *  S  L  Y  P  </second_frame>
            <third_frame>   A  W  L  P  K  T  K  K  K  Q  *  N  N  N  S  L  H  A  N  R  N  F  Q  *  L  I  I  L  A  I  S  *  Q  *  N  S  *  F  *  S  *  K  N  L  K  M  A  D  P  D  T  T  R  T  V  V  G  I  I  G  N  V  I  S  F  F  L  F  L  S  P  G  *  V  S  S  L  I  S  S  S  R  S  I  N  L  I  L  S  L  L  K  A  Q  K  N  K  K  L  S  L  F  M  M  F  R  R  P  T  F  V  Q  I  L  K  A  K  S  V  M  E  F  K  P  D  P  Y  I  A  T  V  L  N  C  A  V  W  V  F  Y  G  M  P  F  V  H  P  D  S  L  L  V  I  T  I  N  G  F  G  L  A  I  E  L  L  Y  V  S  I  F  F  I  Y  S  D  W  S  K  R  :  Q  K  I  I  I  A  L  V  I  E  A  I  F  M  A  I  L  I  F  V  T  L  T  F  L  H  G  T  K  D  R  S  M  L  I  G  I  V  A  I  V  F  N  I  I  M  Y  T  S  P  L  T  V  M  :  K  K  V  I  T  T  K  S  V  K  Y  M  P  F  Y  L  S  L  A  N  F  A  N  G  I  V  W  A  C  Y  A  L  L  K  F  D  P  Y  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0197N20.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98855" stop="99172"/>
                    <exon start="99267" stop="99428"/>
                    <exon start="99523" stop="99642"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSSLISSSRSINLILSLLKAQKNKKLSLFMMFRRPTFVQILKAKSVMEFKPDPYIATVLNCAVWVFYGMPFVHPDSLLVITINGFGLAIELLYVSIFFIYSDWSKRQKIIIALVIEAIFMAILIFVTLTFLHGTKDRSMLIGIVAIVFNIIMYTSPLTVMKKVITTKSVKYMPFYLSLANFANGIVWACYALLKFDPYIL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="98564" e_stop="98580"/>
            <exon e_start="98653" e_stop="98850"/>
            <exon e_start="99042" e_stop="99172"/>
            <exon e_start="99267" e_stop="99428"/>
            <exon e_start="99523" e_stop="99642"/>
            <exon e_start="99749" e_stop="100130"/>
            <exon e_start="100369" e_stop="100373"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.952" acc_prob="0.000" e_score="0.647"/>
          <exon-intron don_prob="1.000" acc_prob="0.099" e_score="0.848"/>
          <exon-intron don_prob="0.992" acc_prob="0.577" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.981"/>
          <exon-intron don_prob="0.968" acc_prob="0.998" e_score="0.992"/>
          <exon-intron don_prob="0.555" acc_prob="0.960" e_score="0.963"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.647">
            <gDNA_exon_boundary e_start="98564" e_stop="98580" e_length="17"/>
          </exon>
          <intron i_serial="1" don_prob="0.952" acc_prob="0.000">
            <gDNA_intron_boundary i_start="98581" i_stop="98652" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="0.848">
            <gDNA_exon_boundary e_start="98653" e_stop="98850" e_length="198"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.099">
            <gDNA_intron_boundary i_start="98851" i_stop="99041" i_length="191"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="99042" e_stop="99172" e_length="131"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.577">
            <gDNA_intron_boundary i_start="99173" i_stop="99266" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="99267" e_stop="99428" e_length="162"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="99429" i_stop="99522" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="99523" e_stop="99642" e_length="120"/>
          </exon>
          <intron i_serial="5" don_prob="0.968" acc_prob="0.998">
            <gDNA_intron_boundary i_start="99643" i_stop="99748" i_length="106"/>
          </intron>
          <exon e_serial="6" e_score="0.963">
            <gDNA_exon_boundary e_start="99749" e_stop="100130" e_length="382"/>
          </exon>
          <intron i_serial="6" don_prob="0.555" acc_prob="0.960">
            <gDNA_intron_boundary i_start="100131" i_stop="100368" i_length="238"/>
          </intron>
          <exon e_serial="7" e_score="0.600">
            <gDNA_exon_boundary e_start="100369" e_stop="100373" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98564" stop="98580"/>
              <exon start="98653" stop="98850"/>
              <exon start="99042" stop="99172"/>
              <exon start="99267" stop="99428"/>
              <exon start="99523" stop="99642"/>
              <exon start="99749" stop="100130"/>
              <exon start="100369" stop="100373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313643" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAACCTCTTAACAAAG : CAAAAAAAAACAATAAAACAATAACAGCCTCCATGCAAATCGCAATTTTCAATAATTAATAATACTTGCCATCTCCTAGCAATAAAATTCGTAATTCTAAAGTTAAAAAAATTTAAAGATGGCAGATCCAGACACCACTAGGACGGTTGTAGGAATCATTGGTAATGTCATATCTTTCTTCCTCTTCTTGTCCCCAGG : TTTGGGTGTTTTATGGCATGCCATTTGTTCACCCTGACAGTCTTCTTGTCATCACCATTAACGGATTTGGTCTTGCTATTGAGTTACTCTACGTCTCAATCTTCTTCATCTACTCCGATTGGTCTAAGCGA : CAAAAGATCATAATTGCTTTGGTTATTGAAGCAATCTTCATGGCAATCCTCATCTTTGTTACATTAACATTCCTCCATGGAACCAAGGATAGATCAATGCTTATCGGGATTGTGGCTATAGTCTTCAATATCATCATGTACACCTCACCACTGACCGTCATG : AAGAAGGTGATCACCACCAAGAGTGTAAAATACATGCCATTTTACTTGTCACTAGCAAACTTTGCTAATGGCATTGTTTGGGCATGCTATGCACTCCTCAAATTTGATCCTTATATCCTG : ATCCCCAATGGATTGGGTTCATTGTCTGGATTAGTGCAGTTGATCCTCTTTGCAGCATTTTACCGCACAACAAATTGGGATGAGGATGAGAAAGAAGTTGAACTAAGTACTTCCAAATCCAACAAGTCAGATGTCTGATAAACAAAAATTGCAGAGATGAAACTCCCACACTGTTTTCCAAGTGTGTGTATACACATATGGTGTGATAAAGAGAGAAAAAGATAAAAGTCTACCATTTTAACAGTATACTCTTGATGTATTTACCCTGCATTTTCACTTTATTTCTTTAAAGCAAATCAGTTAATATATGTATGAGATCTCCAATTGTAGACATCTTTTTCATATGGCAAGAGTTGATCATCTCACCTGACTTCTATATCTC : GAGAA</gDNA_template>
            <first_frame> L  T  S  *  Q  S :   K  K  K  Q  *  N  N  N  S  L  H  A  N  R  N  F  Q  *  L  I  I  L  A  I  S  *  Q  *  N  S  *  F  *  S  *  K  N  L  K  M  A  D  P  D  T  T  R  T  V  V  G  I  I  G  N  V  I  S  F  F  L  F  L  S  P  G :   L  G  V  L  W  H  A  I  C  S  P  *  Q  S  S  C  H  H  H  *  R  I  W  S  C  Y  *  V  T  L  R  L  N  L  L  H  L  L  R  L  V  *  A   : T  K  D  H  N  C  F  G  Y  *  S  N  L  H  G  N  P  H  L  C  Y  I  N  I  P  P  W  N  Q  G  *  I  N  A  Y  R  D  C  G  Y  S  L  Q  Y  H  H  V  H  L  T  T  D  R  H   : E  E  G  D  H  H  Q  E  C  K  I  H  A  I  L  L  V  T  S  K  L  C  *  W  H  C  L  G  M  L  C  T  P  Q  I  *  S  L  Y  P   : D  P  Q  W  I  G  F  I  V  W  I  S  A  V  D  P  L  C  S  I  L  P  H  N  K  L  G  *  G  *  E  R  S  *  T  K  Y  F  Q  I  Q  Q  V  R  C  L  I  N  K  N  C  R  D  E  T  P  T  L  F  S  K  C  V  Y  T  H  M  V  *  *  R  E  K  K  I  K  V  Y  H  F  N  S  I  L  L  M  Y  L  P  C  I  F  T  L  F  L  *  S  K  S  V  N  I  C  M  R  S  P  I  V  D  I  F  F  I  W  Q  E  L  I  I  S  P  D  F  Y  I  S :   R  </first_frame>
            <second_frame>  *  P  L  N  K   : A  K  K  N  N  K  T  I  T  A  S  M  Q  I  A  I  F  N  N  *  *  Y  L  P  S  P  S  N  K  I  R  N  S  K  V  K  K  I  *  R  W  Q  I  Q  T  P  L  G  R  L  *  E  S  L  V  M  S  Y  L  S  S  S  S  C  P  Q   : V  W  V  F  Y  G  M  P  F  V  H  P  D  S  L  L  V  I  T  I  N  G  F  G  L  A  I  E  L  L  Y  V  S  I  F  F  I  Y  S  D  W  S  K  R  :  Q  K  I  I  I  A  L  V  I  E  A  I  F  M  A  I  L  I  F  V  T  L  T  F  L  H  G  T  K  D  R  S  M  L  I  G  I  V  A  I  V  F  N  I  I  M  Y  T  S  P  L  T  V  M  :  K  K  V  I  T  T  K  S  V  K  Y  M  P  F  Y  L  S  L  A  N  F  A  N  G  I  V  W  A  C  Y  A  L  L  K  F  D  P  Y  I  L  :  I  P  N  G  L  G  S  L  S  G  L  V  Q  L  I  L  F  A  A  F  Y  R  T  T  N  W  D  E  D  E  K  E  V  E  L  S  T  S  K  S  N  K  S  D  V  *  *  T  K  I  A  E  M  K  L  P  H  C  F  P  S  V  C  I  H  I  W  C  D  K  E  R  K  R  *  K  S  T  I  L  T  V  Y  S  *  C  I  Y  P  A  F  S  L  Y  F  F  K  A  N  Q  L  I  Y  V  *  D  L  Q  L  *  T  S  F  S  Y  G  K  S  *  S  S  H  L  T  S  I  S   : R  E </second_frame>
            <third_frame>   N  L  L  T  K  :  Q  K  K  T  I  K  Q  *  Q  P  P  C  K  S  Q  F  S  I  I  N  N  T  C  H  L  L  A  I  K  F  V  I  L  K  L  K  K  F  K  D  G  R  S  R  H  H  *  D  G  C  R  N  H  W  *  C  H  I  F  L  P  L  L  V  P  R  :  F  G  C  F  M  A  C  H  L  F  T  L  T  V  F  L  S  S  P  L  T  D  L  V  L  L  L  S  Y  S  T  S  Q  S  S  S  S  T  P  I  G  L  S  D :   K  R  S  *  L  L  W  L  L  K  Q  S  S  W  Q  S  S  S  L  L  H  *  H  S  S  M  E  P  R  I  D  Q  C  L  S  G  L  W  L  *  S  S  I  S  S  C  T  P  H  H  *  P  S  * :   R  R  *  S  P  P  R  V  *  N  T  C  H  F  T  C  H  *  Q  T  L  L  M  A  L  F  G  H  A  M  H  S  S  N  L  I  L  I  S  * :   S  P  M  D  W  V  H  C  L  D  *  C  S  *  S  S  L  Q  H  F  T  A  Q  Q  I  G  M  R  M  R  K  K  L  N  *  V  L  P  N  P  T  S  Q  M  S  D  K  Q  K  L  Q  R  *  N  S  H  T  V  F  Q  V  C  V  Y  T  Y  G  V  I  K  R  E  K  D  K  S  L  P  F  *  Q  Y  T  L  D  V  F  T  L  H  F  H  F  I  S  L  K  Q  I  S  *  Y  M  Y  E  I  S  N  C  R  H  L  F  H  M  A  R  V  D  H  L  T  *  L  L  Y  L  :  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0197N20.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98805" stop="98850"/>
                    <exon start="99042" stop="99172"/>
                    <exon start="99267" stop="99428"/>
                    <exon start="99523" stop="99642"/>
                    <exon start="99749" stop="99886"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESLVMSYLSSSSCPQVWVFYGMPFVHPDSLLVITINGFGLAIELLYVSIFFIYSDWSKRQKIIIALVIEAIFMAILIFVTLTFLHGTKDRSMLIGIVAIVFNIIMYTSPLTVMKKVITTKSVKYMPFYLSLANFANGIVWACYALLKFDPYILIPNGLGSLSGLVQLILFAAFYRTTNWDEDEKEVELSTSKSNKSDV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="104309" PGL_stop="100954"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104309" e_stop="103853"/>
            <exon e_start="103128" e_stop="103007"/>
            <exon e_start="101932" e_stop="101736"/>
            <exon e_start="101636" e_stop="101462"/>
            <exon e_start="101069" e_stop="100954"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.940" e_score="0.998"/>
          <exon-intron don_prob="0.925" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.894" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="104309" e_stop="103853" e_length="457"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.940">
            <gDNA_intron_boundary i_start="103852" i_stop="103129" i_length="724"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103128" e_stop="103007" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.925" acc_prob="0.992">
            <gDNA_intron_boundary i_start="103006" i_stop="101933" i_length="1074"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101932" e_stop="101736" e_length="197"/>
          </exon>
          <intron i_serial="3" don_prob="0.961" acc_prob="0.894">
            <gDNA_intron_boundary i_start="101735" i_stop="101637" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="101636" e_stop="101462" e_length="175"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="101461" i_stop="101070" i_length="392"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="101069" e_stop="100954" e_length="116"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104309" stop="103853"/>
              <exon start="103128" stop="103007"/>
              <exon start="101932" stop="101736"/>
              <exon start="101636" stop="101572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103876" stop="103853"/>
              <exon start="103128" stop="103007"/>
              <exon start="101932" stop="101736"/>
              <exon start="101636" stop="101462"/>
              <exon start="101069" stop="100954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335063" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTTACACTACATACCCCCAACAAGCCCTCCTTGTTCTTCTTCTTTTTCAATTCTTCTACTGTGAAACTACTAAAAATCCAATCTTTACAACTTTGCAGAAGCAAAAATGGAGAAGGGCAGTGATGGGTTTGTGAGAGCAGATCAGATTGATTTGAAGAGCTTGGATGAACAACTTGAAAGGCATCTTATCAGAGCAAGAACTATGGACAAGGATAAGAATAAGAAGAAACCACAAGATGATTCTTCCATTAACTACAACATTTCTATTGCTACAGTGGCCAACCACCCCACCACCCCCAACCCCAACCCCAACCTCTCTCTGTTTAGCTCATCTGTTCCTAGGCAAAGATATGAGTGGGAAATTGACCCTTCAAAGCTCATCATCAAAACTGTTCTTGCTCGTGGAACCTTTGGTACTGTCCACCGTGGCGTTTATGATGGTCAAGATGTTGCTG : TTAAACTTCTGGACTGGGGGGAAGAGGGACACAGAACAGAAGCTGAAATAGCATCACTAAGGGCAGCTTTTACTCAAGAAGTTTCAGTGTGGCATAAACTTGACCATCCTAATGTAACCAAG : TTCATCGGAGCGACCATGGGAGCTTCTGGTCTAAATATACAAACAGAAAATGGTCATATTGGCATGCCTAGTAATATATGTTGTGTTGTTGTGGAATATCTTCCGGGCGGTGCCTTAAAATCTTACCTTATCAAGAACAGAAGAAAGAAGCTAGCATTTAAAGTTGTAGTGCAGATTGCACTTGATTTGGCCAGAGG : GTTAAGTTACCTTCATACTCAGAAGATTGTGCACAGAGATGTCAAGACAGAGAATATGCTGTTGGACAAGACACGTACTGTAAAGATTGCAGACTTTGGGGTTGCACGAGTTGAGGCCTCTAATCCTAATGACATGACGGGGGAGACAGGAACCCTTGGCTATATGGCTCCTGAG : GTTCTCAATGGCAACCCCTACAACAGGAAATGCGATGTGTATAGTTTTGGCATATGTTTGTGGGAGATATACTGCTGTGACATGCCATATCCTGATCTCAGTTTCTCAGAAGTGAC</gDNA_template>
            <first_frame> S  L  H  Y  I  P  P  T  S  P  P  C  S  S  S  F  S  I  L  L  L  *  N  Y  *  K  S  N  L  Y  N  F  A  E  A  K  M  E  K  G  S  D  G  F  V  R  A  D  Q  I  D  L  K  S  L  D  E  Q  L  E  R  H  L  I  R  A  R  T  M  D  K  D  K  N  K  K  K  P  Q  D  D  S  S  I  N  Y  N  I  S  I  A  T  V  A  N  H  P  T  T  P  N  P  N  P  N  L  S  L  F  S  S  S  V  P  R  Q  R  Y  E  W  E  I  D  P  S  K  L  I  I  K  T  V  L  A  R  G  T  F  G  T  V  H  R  G  V  Y  D  G  Q  D  V  A   : V  K  L  L  D  W  G  E  E  G  H  R  T  E  A  E  I  A  S  L  R  A  A  F  T  Q  E  V  S  V  W  H  K  L  D  H  P  N  V  T  K  :  F  I  G  A  T  M  G  A  S  G  L  N  I  Q  T  E  N  G  H  I  G  M  P  S  N  I  C  C  V  V  V  E  Y  L  P  G  G  A  L  K  S  Y  L  I  K  N  R  R  K  K  L  A  F  K  V  V  V  Q  I  A  L  D  L  A  R  G :   L  S  Y  L  H  T  Q  K  I  V  H  R  D  V  K  T  E  N  M  L  L  D  K  T  R  T  V  K  I  A  D  F  G  V  A  R  V  E  A  S  N  P  N  D  M  T  G  E  T  G  T  L  G  Y  M  A  P  E  :  V  L  N  G  N  P  Y  N  R  K  C  D  V  Y  S  F  G  I  C  L  W  E  I  Y  C  C  D  M  P  Y  P  D  L  S  F  S  E  V   </first_frame>
            <second_frame>  L  Y  T  T  Y  P  Q  Q  A  L  L  V  L  L  L  F  Q  F  F  Y  C  E  T  T  K  N  P  I  F  T  T  L  Q  K  Q  K  W  R  R  A  V  M  G  L  *  E  Q  I  R  L  I  *  R  A  W  M  N  N  L  K  G  I  L  S  E  Q  E  L  W  T  R  I  R  I  R  R  N  H  K  M  I  L  P  L  T  T  T  F  L  L  L  Q  W  P  T  T  P  P  P  P  T  P  T  P  T  S  L  C  L  A  H  L  F  L  G  K  D  M  S  G  K  L  T  L  Q  S  S  S  S  K  L  F  L  L  V  E  P  L  V  L  S  T  V  A  F  M  M  V  K  M  L  L  :  L  N  F  W  T  G  G  K  R  D  T  E  Q  K  L  K  *  H  H  *  G  Q  L  L  L  K  K  F  Q  C  G  I  N  L  T  I  L  M  *  P  S :   S  S  E  R  P  W  E  L  L  V  *  I  Y  K  Q  K  M  V  I  L  A  C  L  V  I  Y  V  V  L  L  W  N  I  F  R  A  V  P  *  N  L  T  L  S  R  T  E  E  R  S  *  H  L  K  L  *  C  R  L  H  L  I  W  P  E   : G  *  V  T  F  I  L  R  R  L  C  T  E  M  S  R  Q  R  I  C  C  W  T  R  H  V  L  *  R  L  Q  T  L  G  L  H  E  L  R  P  L  I  L  M  T  *  R  G  R  Q  E  P  L  A  I  W  L  L  R :   F  S  M  A  T  P  T  T  G  N  A  M  C  I  V  L  A  Y  V  C  G  R  Y  T  A  V  T  C  H  I  L  I  S  V  S  Q  K  *  </second_frame>
            <third_frame>   F  T  L  H  T  P  N  K  P  S  L  F  F  F  F  F  N  S  S  T  V  K  L  L  K  I  Q  S  L  Q  L  C  R  S  K  N  G  E  G  Q  *  W  V  C  E  S  R  S  D  *  F  E  E  L  G  *  T  T  *  K  A  S  Y  Q  S  K  N  Y  G  Q  G  *  E  *  E  E  T  T  R  *  F  F  H  *  L  Q  H  F  Y  C  Y  S  G  Q  P  P  H  H  P  Q  P  Q  P  Q  P  L  S  V  *  L  I  C  S  *  A  K  I  *  V  G  N  *  P  F  K  A  H  H  Q  N  C  S  C  S  W  N  L  W  Y  C  P  P  W  R  L  *  W  S  R  C  C  C :   *  T  S  G  L  G  G  R  G  T  Q  N  R  S  *  N  S  I  T  K  G  S  F  Y  S  R  S  F  S  V  A  *  T  *  P  S  *  C  N  Q   : V  H  R  S  D  H  G  S  F  W  S  K  Y  T  N  R  K  W  S  Y  W  H  A  *  *  Y  M  L  C  C  C  G  I  S  S  G  R  C  L  K  I  L  P  Y  Q  E  Q  K  K  E  A  S  I  *  S  C  S  A  D  C  T  *  F  G  Q  R  :  V  K  L  P  S  Y  S  E  D  C  A  Q  R  C  Q  D  R  E  Y  A  V  G  Q  D  T  Y  C  K  D  C  R  L  W  G  C  T  S  *  G  L  *  S  *  *  H  D  G  G  D  R  N  P  W  L  Y  G  S  *   : G  S  Q  W  Q  P  L  Q  Q  E  M  R  C  V  *  F  W  H  M  F  V  G  D  I  L  L  *  H  A  I  S  *  S  Q  F  L  R  S  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0197N20.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104234" stop="103853"/>
                    <exon start="103128" stop="103007"/>
                    <exon start="101932" stop="101736"/>
                    <exon start="101636" stop="101462"/>
                    <exon start="101069" stop="100956"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>990</number_coding_nucleotides>
                  <number_encoded_amino_acids>330</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSNLYNFAEAKMEKGSDGFVRADQIDLKSLDEQLERHLIRARTMDKDKNKKKPQDDSSINYNISIATVANHPTTPNPNPNLSLFSSSVPRQRYEWEIDPSKLIIKTVLARGTFGTVHRGVYDGQDVAVKLLDWGEEGHRTEAEIASLRAAFTQEVSVWHKLDHPNVTKFIGATMGASGLNIQTENGHIGMPSNICCVVVEYLPGGALKSYLIKNRRKKLAFKVVVQIALDLARGLSYLHTQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 39 chains have been computed
$ 
$ memory statistics:
$ 55016 bytes spliced alignments in total
$ 27 spliced alignments have been stored
$ 2037 bytes was the average size of a spliced alignment
$ 27568 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1621 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 43 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 17:58:57
-->
