<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 17:40:06"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724428" ref_strand="+" ref_description="SGN-E724428 [FC24AD03]">
      <seq>gattggcggccaatcggccgaattgtcagtaaaatcagcctcgaatcttctataaacaaaaagctccgatgcaccgttcatcaagcagtggatctttctggacgttttctcgaaacgacggtacggtgatgaaaagtggagtttccagttttcagactgatgctacgataatgatccgccatggcgtcgtcatactagttgctcttttgtggttttccacagccgaagcttctcagtgctcaattaatggactgccactcgtgaagaatatcagcgagtttccactacacaactacgggaggtcaggtttatctcacactacaattgctggttcagtcttgcacggcatgaaagagatagaggtgtggctacaaacatttgcccccggatgtcgcacaccaatccacaggcactcatgtgaagaagtttttatcgtcttgaagggtcaaggcactctctatcttgctcctagttcacattcaaagtacccaggaaacccacaggagtttcatatattccctaatagcacttttcatatccccgttaatgatgtacaccagatatggaacactggtgaacatgaagatttacaagctttagttgttatatctcgtcctccagtgaaagtgtttatgtacgatgactggtcgatgccacacacagctgccaaattgaagttcccgtattactgggatgagaaatgttatcagacaacaacgaggaaagacgagctttagccagaaaagtaggctatgcagttacttacatttagctagtgtttgatatgtttctgtattatgctggggtctagcttatttgaaggagtcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4949" stop="8186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5259" g_stop="5478" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="249" r_length="220" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5479" i_stop="5865" i_length="387">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5866" g_stop="5972" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="356" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5973" i_stop="6164" i_length="192">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6165" g_stop="6368" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="560" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6369" i_stop="6967" i_length="599">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6968" g_stop="7035" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="628" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7036" i_stop="7684" i_length="649">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7685" g_stop="7886" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="830" r_length="202" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E724428" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5259" e_stop="5478"/>
          <exon e_start="5866" e_stop="5972"/>
          <exon e_start="6165" e_stop="6368"/>
          <exon e_start="6968" e_stop="7035"/>
          <exon e_start="7685" e_stop="7886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATCAGTCTCGAATCTTCTATAAACAAAAAGCTCCGATGCACCGTTCATCAAGCAGTGGATCTTTCTGGACGTTTTCTCGAAACGACGGTACGGTGATGAAAAGTGGAGTTTCCAGTTTTCAGACTGATGCTACGATAATGATCCGCCATGGCGTCGTCATACTAGTTGCTCTTTTGTGGTTTTCCACAGCCGAAGCTTCTCAGTGCTCAATTAATGGCAAGTCTTCTCATCATTTCCTCTGTATGTGTATGAGAAAAATTTGATATGTATCATTATAAATTTTCACTAAGTAGTAGTGTAGTGGATGCAATGCACTGATATTCTGTTCTCACTAATTTAAAACCATGATTCTGCCTTCAAGTTAGGGAAAAATTCCTACTGGAGGAAATTCTGGGGAGCTTAGAAGCTGATTTGGATTAGTTGTGGCCCTTTTAATTCTAGAAGAAACAAGTTATTGGTTCCTTTGACTGAATTTCCAATGATCGATTGATAATATGCTCAATTGTTTTGAACTGTAAAGAAATTAATTAACATTTTCATTTGGTTGTTATTATGAGCAAATTTTTTTATCTTATAGAAGCTGTGATTTTCCTCATTTTGCAGGACTGCCACTCGTGAAGAATATCAGCGAGTTTCCACTACACAACTACGGGAGGTCAGGTTTATCTCACACTACAATTGCTGGTTCAGTCTTGCACGGCATGAAAGAGGTACTATTCTGCTTGCAGTTACTTAATTTTGACGATACTCGCTGACCTGAATAGAATGCAGATAGAAAGGATTTATATAGCCAGTTCTATCTAATTTGAGATTGAAATAAAGTTGATTGATAGTTAATATTGTCTATTTGGTTTAGACTGTTGCAATTTACTTTGGTTTCATTGCTATTATTTCATGAATAGATAGAGGTGTGGCTACAAACATTTGCCCCCGGATGTCGCACACCAATCCACAGGCACTCATGTGAAGAAGTTTTTATCGTCTTGAAGGGTCAAGGCACTCTCTATCTTGCTCCTAGTTCACATTCAAAGTACCCAGGAAACCCACAGGAGTTTCATATATTCCCTAATAGCACTTTTCATATCCCCGTTAATGATGTACACCAGGTATACATTCTGCCTTGTTCTATCATACTTGTGCTTAAAGTTATTCCTGCAAGATGCAAATAGAGTTCAATAACTTGATAAAGAAAACTTTGAGCTGATACATTTCTTAATGTTGCATCTAGTATTGTAGATAAAAACACTTACCAAGGGTTTCTAATTTTTACTTCTTGAATTATAATCAATCAGTTGACAAATTAATTGTTGAAAGGATTTAAGAATAAAATCAGTCAATATTTTACCAGGCTTCTAGGATAATCTTTGTCTCCACTTCATAATATCTTTATGTGTGAGATATGCTCTATCCCTTCATGGCTAATCTACTTGCTTTTCTTCATCTTTCCATGCTATTTTTGTTTGTGATGGATGAATCTGATGATTGGTTTACTTCTCCCAGCCAAGTAGTTTGCATTAGTCATCCTAGATGCATGCCTTCAATTAAGACAAAATTGTTAATATAGCGTGTTTAAAGACCTATACCAATGCTGCTTTTGCAGTCACAAAACATCAACTGAGCTGTCAATCGTATTACAACTTTTTAAATTAGGCTTCTTCTCTGTGCGCGTGTGACCGGAAGTATGCTTTAATTTTTGTAATTACAGATATGGAACACTGGTGAACATGAAGATTTACAAGCTTTAGTTGTTATATCTCGTCCTCCAGTGAAAGTGTAAGTAACATGTGTTGAACCATAAACTTCCAGTCCACCATTGCACAGATTATCATATACCATCAATTTGTCTGTGCTTAATATTTTTTGTTAACCTTCTTACTTTCATAATTTTGTTTCTATACTTTCCCCACGATGAAAGACTCCATATCAGTTTCATCACCTGATAAGGATCAGTACTTGGACAGTTGGACTTCATCAGAGTTGAATGGGAGTTGTTCTGATGCAGTTACACTCTGTGTTTCCTATGATTTACTATATGTTTTTAGACATTGATGTTTGTTCTTGTCAACATGTATCCCATTGTGTGTAACCCTTATTCCAGGAAAACAATAAACAAGAGGGGGAGGAGGAGGTCAAAATATTTTAGAATAGTTCATCATGGACCAAAACAACTACTATCTAATTTGGCCATTTGAAAGACTTGAGATCAGCCTGCCTGTGCATTTGGAAGCATCTTGTTTTGCTAAGTTCATGATGGTACTAGCTGCGTAAAGGCCTGCAAGGGATTTCTGAAATGTTGTTATTCATCTTTCCTTGTGTGGCTGGCTTGTCATGATTGACTGATAAATTTTCTATAATCCCAGATTGTGCATGCACGCTCTAATTATTACTTAACTGAGCTTTGCTTTCTCGCACTTGTTTTCAGGTTTATGTACGATGACTGGTCGATGCCACACACAGCTGCCAAATTGAAGTTCCCGTATTACTGGGATGAGAAATGTTATCAGACAACAACGAGGAAAGACGAGCTTTAGCCAGAAAAGTAGGCTATGCAGTTACTTACATTTAGCTAGTGTTTGATATGTTTCTGTATTATGCTGGGGTCTAGCTTATTTGAAGGAGTCAAT</genome_strand>
        <mrna_strand>TAAAATCAGCCTCGAATCTTCTATAAACAAAAAGCTCCGATGCACCGTTCATCAAGCAGTGGATCTTTCTGGACGTTTTCTCGAAACGACGGTACGGTGATGAAAAGTGGAGTTTCCAGTTTTCAGACTGATGCTACGATAATGATCCGCCATGGCGTCGTCATACTAGTTGCTCTTTTGTGGTTTTCCACAGCCGAAGCTTCTCAGTGCTCAATTAATG...................................................................................................................................................................................................................................................................................................................................................................................................GACTGCCACTCGTGAAGAATATCAGCGAGTTTCCACTACACAACTACGGGAGGTCAGGTTTATCTCACACTACAATTGCTGGTTCAGTCTTGCACGGCATGAAAGAG................................................................................................................................................................................................ATAGAGGTGTGGCTACAAACATTTGCCCCCGGATGTCGCACACCAATCCACAGGCACTCATGTGAAGAAGTTTTTATCGTCTTGAAGGGTCAAGGCACTCTCTATCTTGCTCCTAGTTCACATTCAAAGTACCCAGGAAACCCACAGGAGTTTCATATATTCCCTAATAGCACTTTTCATATCCCCGTTAATGATGTACACCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGAACACTGGTGAACATGAAGATTTACAAGCTTTAGTTGTTATATCTCGTCCTCCAGTGAAAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGTACGATGACTGGTCGATGCCACACACAGCTGCCAAATTGAAGTTCCCGTATTACTGGGATGAGAAATGTTATCAGACAACAACGAGGAAAGACGAGCTTTAGCCAGAAAAGTAGGCTATGCAGTTACTTACATTTAGCTAGTGTTTGATATGTTTCTGTATTATGCTGGGGTCTAGCTTATTTGAAGGAGTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744987" ref_strand="+" ref_description="SGN-E744987 [GI|3819675]">
      <seq>ctttctggacgttttctcgaaacgacggtacggtgatgaaaagtggagtttccagttttcagactgatgctacgataatgatccgccatggcgtcgtcatactagttgctcttttgtggttttccacagccgaagcttctcagtgctcaattaatggactgccactcgtgaagaatatcagcgagtttccactacacaactacgggaggtcaggtttatctcacactacaattgctggttcagtcttgcacggcatgaaagagatagaggtgtggctacaaacatttgcccccggatgtcgcacaccaatccacaggcactcatgtgaagaagtttttatcgtcttgaagggtcaaggcactctctatcttgctcctagttcacattcaaagtacccaggaaacccacaggagtttcatatattccctaatagcacttttcatatccccgttaatgatgtacaccagatatggaacactggtgaacatgaagatttacaagctttagttgttatatctcgtcctccagtgaaagtgtttatgtacgatgactggtcgatgccacacacagctgccaaattgaagttcccgtattactgggatgagaaatgttatcagacaacaacgaggaaagacgagctttagccagaaaagtaggctatgcagttacttacatttagctagtgtttgatatgtttctgtattatgctggggtctagcttatttgaaggagtcaatgattgactaaaacaggtcttgcagtcatacatagtacaaatgtgttacccagtcaccacattaggagaactttagttgtactccctagctactaatacatgatttctttaattgagaaacattagtaaatgcggtttctgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5023" stop="8330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5323" g_stop="5478" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5479" i_stop="5865" i_length="387">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5866" g_stop="5972" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="263" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5973" i_stop="6164" i_length="192">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6165" g_stop="6368" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="467" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6369" i_stop="6967" i_length="599">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6968" g_stop="7035" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="535" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7036" i_stop="7684" i_length="649">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7685" g_stop="8030" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="881" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E744987" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5323" e_stop="5478"/>
          <exon e_start="5866" e_stop="5972"/>
          <exon e_start="6165" e_stop="6368"/>
          <exon e_start="6968" e_stop="7035"/>
          <exon e_start="7685" e_stop="8030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTGGACGTTTTCTCGAAACGACGGTACGGTGATGAAAAGTGGAGTTTCCAGTTTTCAGACTGATGCTACGATAATGATCCGCCATGGCGTCGTCATACTAGTTGCTCTTTTGTGGTTTTCCACAGCCGAAGCTTCTCAGTGCTCAATTAATGGCAAGTCTTCTCATCATTTCCTCTGTATGTGTATGAGAAAAATTTGATATGTATCATTATAAATTTTCACTAAGTAGTAGTGTAGTGGATGCAATGCACTGATATTCTGTTCTCACTAATTTAAAACCATGATTCTGCCTTCAAGTTAGGGAAAAATTCCTACTGGAGGAAATTCTGGGGAGCTTAGAAGCTGATTTGGATTAGTTGTGGCCCTTTTAATTCTAGAAGAAACAAGTTATTGGTTCCTTTGACTGAATTTCCAATGATCGATTGATAATATGCTCAATTGTTTTGAACTGTAAAGAAATTAATTAACATTTTCATTTGGTTGTTATTATGAGCAAATTTTTTTATCTTATAGAAGCTGTGATTTTCCTCATTTTGCAGGACTGCCACTCGTGAAGAATATCAGCGAGTTTCCACTACACAACTACGGGAGGTCAGGTTTATCTCACACTACAATTGCTGGTTCAGTCTTGCACGGCATGAAAGAGGTACTATTCTGCTTGCAGTTACTTAATTTTGACGATACTCGCTGACCTGAATAGAATGCAGATAGAAAGGATTTATATAGCCAGTTCTATCTAATTTGAGATTGAAATAAAGTTGATTGATAGTTAATATTGTCTATTTGGTTTAGACTGTTGCAATTTACTTTGGTTTCATTGCTATTATTTCATGAATAGATAGAGGTGTGGCTACAAACATTTGCCCCCGGATGTCGCACACCAATCCACAGGCACTCATGTGAAGAAGTTTTTATCGTCTTGAAGGGTCAAGGCACTCTCTATCTTGCTCCTAGTTCACATTCAAAGTACCCAGGAAACCCACAGGAGTTTCATATATTCCCTAATAGCACTTTTCATATCCCCGTTAATGATGTACACCAGGTATACATTCTGCCTTGTTCTATCATACTTGTGCTTAAAGTTATTCCTGCAAGATGCAAATAGAGTTCAATAACTTGATAAAGAAAACTTTGAGCTGATACATTTCTTAATGTTGCATCTAGTATTGTAGATAAAAACACTTACCAAGGGTTTCTAATTTTTACTTCTTGAATTATAATCAATCAGTTGACAAATTAATTGTTGAAAGGATTTAAGAATAAAATCAGTCAATATTTTACCAGGCTTCTAGGATAATCTTTGTCTCCACTTCATAATATCTTTATGTGTGAGATATGCTCTATCCCTTCATGGCTAATCTACTTGCTTTTCTTCATCTTTCCATGCTATTTTTGTTTGTGATGGATGAATCTGATGATTGGTTTACTTCTCCCAGCCAAGTAGTTTGCATTAGTCATCCTAGATGCATGCCTTCAATTAAGACAAAATTGTTAATATAGCGTGTTTAAAGACCTATACCAATGCTGCTTTTGCAGTCACAAAACATCAACTGAGCTGTCAATCGTATTACAACTTTTTAAATTAGGCTTCTTCTCTGTGCGCGTGTGACCGGAAGTATGCTTTAATTTTTGTAATTACAGATATGGAACACTGGTGAACATGAAGATTTACAAGCTTTAGTTGTTATATCTCGTCCTCCAGTGAAAGTGTAAGTAACATGTGTTGAACCATAAACTTCCAGTCCACCATTGCACAGATTATCATATACCATCAATTTGTCTGTGCTTAATATTTTTTGTTAACCTTCTTACTTTCATAATTTTGTTTCTATACTTTCCCCACGATGAAAGACTCCATATCAGTTTCATCACCTGATAAGGATCAGTACTTGGACAGTTGGACTTCATCAGAGTTGAATGGGAGTTGTTCTGATGCAGTTACACTCTGTGTTTCCTATGATTTACTATATGTTTTTAGACATTGATGTTTGTTCTTGTCAACATGTATCCCATTGTGTGTAACCCTTATTCCAGGAAAACAATAAACAAGAGGGGGAGGAGGAGGTCAAAATATTTTAGAATAGTTCATCATGGACCAAAACAACTACTATCTAATTTGGCCATTTGAAAGACTTGAGATCAGCCTGCCTGTGCATTTGGAAGCATCTTGTTTTGCTAAGTTCATGATGGTACTAGCTGCGTAAAGGCCTGCAAGGGATTTCTGAAATGTTGTTATTCATCTTTCCTTGTGTGGCTGGCTTGTCATGATTGACTGATAAATTTTCTATAATCCCAGATTGTGCATGCACGCTCTAATTATTACTTAACTGAGCTTTGCTTTCTCGCACTTGTTTTCAGGTTTATGTACGATGACTGGTCGATGCCACACACAGCTGCCAAATTGAAGTTCCCGTATTACTGGGATGAGAAATGTTATCAGACAACAACGAGGAAAGACGAGCTTTAGCCAGAAAAGTAGGCTATGCAGTTACTTACATTTAGCTAGTGTTTGATATGTTTCTGTATTATGCTGGGGTCTAGCTTATTTGAAGGAGTCAATGATTGACTAAAACAGGTCTTGCAGTCATACATAGTACAAATGTGTTACCCAGTCACCACATTAGGAGAACTTTAGTTGTACTCCCTAGCTACTAATACATGATTTCTTTAATTGAGAAACATTAGTAAATGCGGTTTCTGTGTT</genome_strand>
        <mrna_strand>CTTTCTGGACGTTTTCTCGAAACGACGGTACGGTGATGAAAAGTGGAGTTTCCAGTTTTCAGACTGATGCTACGATAATGATCCGCCATGGCGTCGTCATACTAGTTGCTCTTTTGTGGTTTTCCACAGCCGAAGCTTCTCAGTGCTCAATTAATG...................................................................................................................................................................................................................................................................................................................................................................................................GACTGCCACTCGTGAAGAATATCAGCGAGTTTCCACTACACAACTACGGGAGGTCAGGTTTATCTCACACTACAATTGCTGGTTCAGTCTTGCACGGCATGAAAGAG................................................................................................................................................................................................ATAGAGGTGTGGCTACAAACATTTGCCCCCGGATGTCGCACACCAATCCACAGGCACTCATGTGAAGAAGTTTTTATCGTCTTGAAGGGTCAAGGCACTCTCTATCTTGCTCCTAGTTCACATTCAAAGTACCCAGGAAACCCACAGGAGTTTCATATATTCCCTAATAGCACTTTTCATATCCCCGTTAATGATGTACACCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGAACACTGGTGAACATGAAGATTTACAAGCTTTAGTTGTTATATCTCGTCCTCCAGTGAAAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGTACGATGACTGGTCGATGCCACACACAGCTGCCAAATTGAAGTTCCCGTATTACTGGGATGAGAAATGTTATCAGACAACAACGAGGAAAGACGAGCTTTAGCCAGAAAAGTAGGCTATGCAGTTACTTACATTTAGCTAGTGTTTGATATGTTTCTGTATTATGCTGGGGTCTAGCTTATTTGAAGGAGTCAATGATTGACTAAAACAGGTCTTGCAGTCATACATAGTACAAATGTGTTACCCAGTCACCACATTAGGAGAACTTTAGTTGTACTCCCTAGCTACTAATACATGATTTCTTTAATTGAGAAACATTAGTAAATGCGGTTTCTGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319137" ref_strand="+" ref_description="SGN-E319137 [cTOB-16-M9]">
      <seq>tttctggacgttttctcgaaacgacggtacggtgatgaaaagtggagtttccagttttcagactgatgctacgataatgatccgccatggcgtcgtcatactagttgctcttttgtggttttccacagccgaagcttctcagtgctcaattaatggactgccactcgtgaagaatatcagcgagtttccactacacaactacgggaggtcaggtttatctcacactacaattgctggttcagtcttgcacggcatgaaagagatagaggtgtggctacaaacatttgcccccggatgtctcacaccaatccacaggcactcatgtgaagaagtttttatcgtcttgaagggtcaaggcactctctatcttgctcctagttcacattcaaagtacccaggaaacccacaggagtttcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5024" stop="6622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5324" g_stop="5478" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5479" i_stop="5865" i_length="387">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5866" g_stop="5972" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="262" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5973" i_stop="6164" i_length="192">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6165" g_stop="6322" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="420" r_length="158" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E319137" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5324" e_stop="5478"/>
          <exon e_start="5866" e_stop="5972"/>
          <exon e_start="6165" e_stop="6322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTGGACGTTTTCTCGAAACGACGGTACGGTGATGAAAAGTGGAGTTTCCAGTTTTCAGACTGATGCTACGATAATGATCCGCCATGGCGTCGTCATACTAGTTGCTCTTTTGTGGTTTTCCACAGCCGAAGCTTCTCAGTGCTCAATTAATGGCAAGTCTTCTCATCATTTCCTCTGTATGTGTATGAGAAAAATTTGATATGTATCATTATAAATTTTCACTAAGTAGTAGTGTAGTGGATGCAATGCACTGATATTCTGTTCTCACTAATTTAAAACCATGATTCTGCCTTCAAGTTAGGGAAAAATTCCTACTGGAGGAAATTCTGGGGAGCTTAGAAGCTGATTTGGATTAGTTGTGGCCCTTTTAATTCTAGAAGAAACAAGTTATTGGTTCCTTTGACTGAATTTCCAATGATCGATTGATAATATGCTCAATTGTTTTGAACTGTAAAGAAATTAATTAACATTTTCATTTGGTTGTTATTATGAGCAAATTTTTTTATCTTATAGAAGCTGTGATTTTCCTCATTTTGCAGGACTGCCACTCGTGAAGAATATCAGCGAGTTTCCACTACACAACTACGGGAGGTCAGGTTTATCTCACACTACAATTGCTGGTTCAGTCTTGCACGGCATGAAAGAGGTACTATTCTGCTTGCAGTTACTTAATTTTGACGATACTCGCTGACCTGAATAGAATGCAGATAGAAAGGATTTATATAGCCAGTTCTATCTAATTTGAGATTGAAATAAAGTTGATTGATAGTTAATATTGTCTATTTGGTTTAGACTGTTGCAATTTACTTTGGTTTCATTGCTATTATTTCATGAATAGATAGAGGTGTGGCTACAAACATTTGCCCCCGGATGTCGCACACCAATCCACAGGCACTCATGTGAAGAAGTTTTTATCGTCTTGAAGGGTCAAGGCACTCTCTATCTTGCTCCTAGTTCACATTCAAAGTACCCAGGAAACCCACAGGAGTTTCATAT</genome_strand>
        <mrna_strand>TTTCTGGACGTTTTCTCGAAACGACGGTACGGTGATGAAAAGTGGAGTTTCCAGTTTTCAGACTGATGCTACGATAATGATCCGCCATGGCGTCGTCATACTAGTTGCTCTTTTGTGGTTTTCCACAGCCGAAGCTTCTCAGTGCTCAATTAATG...................................................................................................................................................................................................................................................................................................................................................................................................GACTGCCACTCGTGAAGAATATCAGCGAGTTTCCACTACACAACTACGGGAGGTCAGGTTTATCTCACACTACAATTGCTGGTTCAGTCTTGCACGGCATGAAAGAG................................................................................................................................................................................................ATAGAGGTGTGGCTACAAACATTTGCCCCCGGATGTCTCACACCAATCCACAGGCACTCATGTGAAGAAGTTTTTATCGTCTTGAAGGGTCAAGGCACTCTCTATCTTGCTCCTAGTTCACATTCAAAGTACCCAGGAAACCCACAGGAGTTTCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715284" ref_strand="+" ref_description="SGN-E715284 [FB13DD06]">
      <seq>ggacgttttctcgaaacgacggtacggtgatgaaaagtggagtttccagttttcagactgatgctacgataatgatccgccatggcgtcgtcatactagttgctcttttgtggttttccacagccgaagcttctcagtgctcaattaatggactgccactcgtgaagaatatcagcgagtttccactacacaactacgggaggtcaggtttatctcacactacaattgctggttcagtcttgcacggcatgaaagagatagaggtgtggctacaaacatttgcccccggatgtcgcacaccaatccacaggcactcatgtgaagaagtttttatcgtcttgaagggtcaaggcactctctatcttgctcctagttcacattcaaagtacccaggaaacccacaggagtttcatatattccctaatagcacttttcatatccccgttaatgatgtacaccagatatggaacactggtgaacatgaagatttacaagctttagttgttatatctcgtccccccagtgaaagtgcttatgtacgatgactggtcgacgccacacacagctgccaaattgaagttcccgtattactgggatgagaaatgttatcagacaacaacgaggaaagacgagctttagccagaaaagtaggctatgcagttacttacatttagctagtgtttgatatgtttctgtattatgctggggtctagcttatttgaaggagtcaatgattgactaaaacaggtcttgcagtcatacatagtacaaatgtgttacccagtcacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5029" stop="8244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5329" g_stop="5478" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5479" i_stop="5865" i_length="387">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5866" g_stop="5972" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="257" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5973" i_stop="6164" i_length="192">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6165" g_stop="6368" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="461" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6369" i_stop="6967" i_length="599">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6968" g_stop="7035" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="530" r_length="69" r_score="0.956"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7036" i_stop="7684" i_length="649">
            <donor d_prob="0.863" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7685" g_stop="7944" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="790" r_length="260" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E715284" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5329" e_stop="5478"/>
          <exon e_start="5866" e_stop="5972"/>
          <exon e_start="6165" e_stop="6368"/>
          <exon e_start="6968" e_stop="7035"/>
          <exon e_start="7685" e_stop="7944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACGTTTTCTCGAAACGACGGTACGGTGATGAAAAGTGGAGTTTCCAGTTTTCAGACTGATGCTACGATAATGATCCGCCATGGCGTCGTCATACTAGTTGCTCTTTTGTGGTTTTCCACAGCCGAAGCTTCTCAGTGCTCAATTAATGGCAAGTCTTCTCATCATTTCCTCTGTATGTGTATGAGAAAAATTTGATATGTATCATTATAAATTTTCACTAAGTAGTAGTGTAGTGGATGCAATGCACTGATATTCTGTTCTCACTAATTTAAAACCATGATTCTGCCTTCAAGTTAGGGAAAAATTCCTACTGGAGGAAATTCTGGGGAGCTTAGAAGCTGATTTGGATTAGTTGTGGCCCTTTTAATTCTAGAAGAAACAAGTTATTGGTTCCTTTGACTGAATTTCCAATGATCGATTGATAATATGCTCAATTGTTTTGAACTGTAAAGAAATTAATTAACATTTTCATTTGGTTGTTATTATGAGCAAATTTTTTTATCTTATAGAAGCTGTGATTTTCCTCATTTTGCAGGACTGCCACTCGTGAAGAATATCAGCGAGTTTCCACTACACAACTACGGGAGGTCAGGTTTATCTCACACTACAATTGCTGGTTCAGTCTTGCACGGCATGAAAGAGGTACTATTCTGCTTGCAGTTACTTAATTTTGACGATACTCGCTGACCTGAATAGAATGCAGATAGAAAGGATTTATATAGCCAGTTCTATCTAATTTGAGATTGAAATAAAGTTGATTGATAGTTAATATTGTCTATTTGGTTTAGACTGTTGCAATTTACTTTGGTTTCATTGCTATTATTTCATGAATAGATAGAGGTGTGGCTACAAACATTTGCCCCCGGATGTCGCACACCAATCCACAGGCACTCATGTGAAGAAGTTTTTATCGTCTTGAAGGGTCAAGGCACTCTCTATCTTGCTCCTAGTTCACATTCAAAGTACCCAGGAAACCCACAGGAGTTTCATATATTCCCTAATAGCACTTTTCATATCCCCGTTAATGATGTACACCAGGTATACATTCTGCCTTGTTCTATCATACTTGTGCTTAAAGTTATTCCTGCAAGATGCAAATAGAGTTCAATAACTTGATAAAGAAAACTTTGAGCTGATACATTTCTTAATGTTGCATCTAGTATTGTAGATAAAAACACTTACCAAGGGTTTCTAATTTTTACTTCTTGAATTATAATCAATCAGTTGACAAATTAATTGTTGAAAGGATTTAAGAATAAAATCAGTCAATATTTTACCAGGCTTCTAGGATAATCTTTGTCTCCACTTCATAATATCTTTATGTGTGAGATATGCTCTATCCCTTCATGGCTAATCTACTTGCTTTTCTTCATCTTTCCATGCTATTTTTGTTTGTGATGGATGAATCTGATGATTGGTTTACTTCTCCCAGCCAAGTAGTTTGCATTAGTCATCCTAGATGCATGCCTTCAATTAAGACAAAATTGTTAATATAGCGTGTTTAAAGACCTATACCAATGCTGCTTTTGCAGTCACAAAACATCAACTGAGCTGTCAATCGTATTACAACTTTTTAAATTAGGCTTCTTCTCTGTGCGCGTGTGACCGGAAGTATGCTTTAATTTTTGTAATTACAGATATGGAACACTGGTGAACATGAAGATTTACAAGCTTTAGTTGTTATATCTCGT-CCTCCAGTGAAAGTGTAAGTAACATGTGTTGAACCATAAACTTCCAGTCCACCATTGCACAGATTATCATATACCATCAATTTGTCTGTGCTTAATATTTTTTGTTAACCTTCTTACTTTCATAATTTTGTTTCTATACTTTCCCCACGATGAAAGACTCCATATCAGTTTCATCACCTGATAAGGATCAGTACTTGGACAGTTGGACTTCATCAGAGTTGAATGGGAGTTGTTCTGATGCAGTTACACTCTGTGTTTCCTATGATTTACTATATGTTTTTAGACATTGATGTTTGTTCTTGTCAACATGTATCCCATTGTGTGTAACCCTTATTCCAGGAAAACAATAAACAAGAGGGGGAGGAGGAGGTCAAAATATTTTAGAATAGTTCATCATGGACCAAAACAACTACTATCTAATTTGGCCATTTGAAAGACTTGAGATCAGCCTGCCTGTGCATTTGGAAGCATCTTGTTTTGCTAAGTTCATGATGGTACTAGCTGCGTAAAGGCCTGCAAGGGATTTCTGAAATGTTGTTATTCATCTTTCCTTGTGTGGCTGGCTTGTCATGATTGACTGATAAATTTTCTATAATCCCAGATTGTGCATGCACGCTCTAATTATTACTTAACTGAGCTTTGCTTTCTCGCACTTGTTTTCAGGTTTATGTACGATGACTGGTCGATGCCACACACAGCTGCCAAATTGAAGTTCCCGTATTACTGGGATGAGAAATGTTATCAGACAACAACGAGGAAAGACGAGCTTTAGCCAGAAAAGTAGGCTATGCAGTTACTTACATTTAGCTAGTGTTTGATATGTTTCTGTATTATGCTGGGGTCTAGCTTATTTGAAGGAGTCAATGATTGACTAAAACAGGTCTTGCAGTCATACATAGTACAAATGTGTTACCCAGTCACCA</genome_strand>
        <mrna_strand>GGACGTTTTCTCGAAACGACGGTACGGTGATGAAAAGTGGAGTTTCCAGTTTTCAGACTGATGCTACGATAATGATCCGCCATGGCGTCGTCATACTAGTTGCTCTTTTGTGGTTTTCCACAGCCGAAGCTTCTCAGTGCTCAATTAATG...................................................................................................................................................................................................................................................................................................................................................................................................GACTGCCACTCGTGAAGAATATCAGCGAGTTTCCACTACACAACTACGGGAGGTCAGGTTTATCTCACACTACAATTGCTGGTTCAGTCTTGCACGGCATGAAAGAG................................................................................................................................................................................................ATAGAGGTGTGGCTACAAACATTTGCCCCCGGATGTCGCACACCAATCCACAGGCACTCATGTGAAGAAGTTTTTATCGTCTTGAAGGGTCAAGGCACTCTCTATCTTGCTCCTAGTTCACATTCAAAGTACCCAGGAAACCCACAGGAGTTTCATATATTCCCTAATAGCACTTTTCATATCCCCGTTAATGATGTACACCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGAACACTGGTGAACATGAAGATTTACAAGCTTTAGTTGTTATATCTCGTCCCCCCAGTGAAAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATGTACGATGACTGGTCGACGCCACACACAGCTGCCAAATTGAAGTTCCCGTATTACTGGGATGAGAAATGTTATCAGACAACAACGAGGAAAGACGAGCTTTAGCCAGAAAAGTAGGCTATGCAGTTACTTACATTTAGCTAGTGTTTGATATGTTTCTGTATTATGCTGGGGTCTAGCTTATTTGAAGGAGTCAATGATTGACTAAAACAGGTCTTGCAGTCATACATAGTACAAATGTGTTACCCAGTCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557927" ref_strand="+" ref_description="SGN-E557927 [16802]">
      <seq>ggacgttttctcgaaacgacggtacggtgatgaaaagtggagtttccagttttcagactgatggcgggattatgatccgccatggcgtcgtcatactagtttctcttttgtggttcgccacagccgaagcttctccttgctcaattaatggactaccactcgtgaagaatattagcgagcttccacaacacaactacgggaggtcaggtttatctcacactacaattgcaggttcagtcttgcacggcatgaaagagatagaggtgtggcttcaaacatttgcccctggatctcgcacaccaatccacaggcactcatgtgaaaaagtttttgtcgtcttgaagggtcaaggcactctctatcttgctcctagttcgcattcaaagtacccaggaaacccacaggattttcatatattccctaatagcacttttcatatccctgttaatgatgttcaccaggtatggaacactggtaaacatgaagatctacaagttttagttgttatatctcgtcctccagtgaaagtgtttatgtacgatgactggtcgatgccacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5029" stop="8016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5329" g_stop="5478" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5479" i_stop="5865" i_length="387">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5866" g_stop="5972" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="257" r_length="107" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5973" i_stop="6164" i_length="192">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6165" g_stop="6368" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="461" r_length="204" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6369" i_stop="6967" i_length="599">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.969" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6968" g_stop="7035" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="529" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7036" i_stop="7684" i_length="649">
            <donor d_prob="0.863" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7685" g_stop="7716" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="561" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E557927" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5329" e_stop="5478"/>
          <exon e_start="5866" e_stop="5972"/>
          <exon e_start="6165" e_stop="6368"/>
          <exon e_start="6968" e_stop="7035"/>
          <exon e_start="7685" e_stop="7716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACGTTTTCTCGAAACGACGGTACGGTGATGAAAAGTGGAGTTTCCAGTTTTCAGACTGATGCTACGATAATGATCCGCCATGGCGTCGTCATACTAGTTGCTCTTTTGTGGTTTTCCACAGCCGAAGCTTCTCAGTGCTCAATTAATGGCAAGTCTTCTCATCATTTCCTCTGTATGTGTATGAGAAAAATTTGATATGTATCATTATAAATTTTCACTAAGTAGTAGTGTAGTGGATGCAATGCACTGATATTCTGTTCTCACTAATTTAAAACCATGATTCTGCCTTCAAGTTAGGGAAAAATTCCTACTGGAGGAAATTCTGGGGAGCTTAGAAGCTGATTTGGATTAGTTGTGGCCCTTTTAATTCTAGAAGAAACAAGTTATTGGTTCCTTTGACTGAATTTCCAATGATCGATTGATAATATGCTCAATTGTTTTGAACTGTAAAGAAATTAATTAACATTTTCATTTGGTTGTTATTATGAGCAAATTTTTTTATCTTATAGAAGCTGTGATTTTCCTCATTTTGCAGGACTGCCACTCGTGAAGAATATCAGCGAGTTTCCACTACACAACTACGGGAGGTCAGGTTTATCTCACACTACAATTGCTGGTTCAGTCTTGCACGGCATGAAAGAGGTACTATTCTGCTTGCAGTTACTTAATTTTGACGATACTCGCTGACCTGAATAGAATGCAGATAGAAAGGATTTATATAGCCAGTTCTATCTAATTTGAGATTGAAATAAAGTTGATTGATAGTTAATATTGTCTATTTGGTTTAGACTGTTGCAATTTACTTTGGTTTCATTGCTATTATTTCATGAATAGATAGAGGTGTGGCTACAAACATTTGCCCCCGGATGTCGCACACCAATCCACAGGCACTCATGTGAAGAAGTTTTTATCGTCTTGAAGGGTCAAGGCACTCTCTATCTTGCTCCTAGTTCACATTCAAAGTACCCAGGAAACCCACAGGAGTTTCATATATTCCCTAATAGCACTTTTCATATCCCCGTTAATGATGTACACCAGGTATACATTCTGCCTTGTTCTATCATACTTGTGCTTAAAGTTATTCCTGCAAGATGCAAATAGAGTTCAATAACTTGATAAAGAAAACTTTGAGCTGATACATTTCTTAATGTTGCATCTAGTATTGTAGATAAAAACACTTACCAAGGGTTTCTAATTTTTACTTCTTGAATTATAATCAATCAGTTGACAAATTAATTGTTGAAAGGATTTAAGAATAAAATCAGTCAATATTTTACCAGGCTTCTAGGATAATCTTTGTCTCCACTTCATAATATCTTTATGTGTGAGATATGCTCTATCCCTTCATGGCTAATCTACTTGCTTTTCTTCATCTTTCCATGCTATTTTTGTTTGTGATGGATGAATCTGATGATTGGTTTACTTCTCCCAGCCAAGTAGTTTGCATTAGTCATCCTAGATGCATGCCTTCAATTAAGACAAAATTGTTAATATAGCGTGTTTAAAGACCTATACCAATGCTGCTTTTGCAGTCACAAAACATCAACTGAGCTGTCAATCGTATTACAACTTTTTAAATTAGGCTTCTTCTCTGTGCGCGTGTGACCGGAAGTATGCTTTAATTTTTGTAATTACAGATATGGAACACTGGTGAACATGAAGATTTACAAGCTTTAGTTGTTATATCTCGTCCTCCAGTGAAAGTGTAAGTAACATGTGTTGAACCATAAACTTCCAGTCCACCATTGCACAGATTATCATATACCATCAATTTGTCTGTGCTTAATATTTTTTGTTAACCTTCTTACTTTCATAATTTTGTTTCTATACTTTCCCCACGATGAAAGACTCCATATCAGTTTCATCACCTGATAAGGATCAGTACTTGGACAGTTGGACTTCATCAGAGTTGAATGGGAGTTGTTCTGATGCAGTTACACTCTGTGTTTCCTATGATTTACTATATGTTTTTAGACATTGATGTTTGTTCTTGTCAACATGTATCCCATTGTGTGTAACCCTTATTCCAGGAAAACAATAAACAAGAGGGGGAGGAGGAGGTCAAAATATTTTAGAATAGTTCATCATGGACCAAAACAACTACTATCTAATTTGGCCATTTGAAAGACTTGAGATCAGCCTGCCTGTGCATTTGGAAGCATCTTGTTTTGCTAAGTTCATGATGGTACTAGCTGCGTAAAGGCCTGCAAGGGATTTCTGAAATGTTGTTATTCATCTTTCCTTGTGTGGCTGGCTTGTCATGATTGACTGATAAATTTTCTATAATCCCAGATTGTGCATGCACGCTCTAATTATTACTTAACTGAGCTTTGCTTTCTCGCACTTGTTTTCAGGTTTATGTACGATGACTGGTCGATGCCACACA</genome_strand>
        <mrna_strand>GGACGTTTTCTCGAAACGACGGTACGGTGATGAAAAGTGGAGTTTCCAGTTTTCAGACTGATGGCGGGATTATGATCCGCCATGGCGTCGTCATACTAGTTTCTCTTTTGTGGTTCGCCACAGCCGAAGCTTCTCCTTGCTCAATTAATG...................................................................................................................................................................................................................................................................................................................................................................................................GACTACCACTCGTGAAGAATATTAGCGAGCTTCCACAACACAACTACGGGAGGTCAGGTTTATCTCACACTACAATTGCAGGTTCAGTCTTGCACGGCATGAAAGAG................................................................................................................................................................................................ATAGAGGTGTGGCTTCAAACATTTGCCCCTGGATCTCGCACACCAATCCACAGGCACTCATGTGAAAAAGTTTTTGTCGTCTTGAAGGGTCAAGGCACTCTCTATCTTGCTCCTAGTTCGCATTCAAAGTACCCAGGAAACCCACAGGATTTTCATATATTCCCTAATAGCACTTTTCATATCCCTGTTAATGATGTTCACCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGAACACTGGTAAACATGAAGATCTACAAGTTTTAGTTGTTATATCTCGTCCTCCAGTGAAAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGTACGATGACTGGTCGATGCCACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718602" ref_strand="+" ref_description="SGN-E718602 [FC05AF05]">
      <seq>ttttctcgaaacgacggtacggtgatgaaaagtggagtttccagttttcagactgatgctacgataatgatccgccatggcgtcgtcatactagttgctcttttgtggttttccacagccgaagcttctcagtgctcaattaatggactgccactcgtgaagaatatcagcgagtttccactacacaactacgggaggtcaggtttatctcacactacaattgctggttcagtcttgcacggcatgaaagagatagaggtgtggctacaaacatttgcccccggatgtcgcacaccaatccacaggcactcatgtgaagaagtttttatcgtcttgaagggtcaaggcactctctatcttgctcctagttcacattcaaagtacccaggaaacccacaggagtttcatatattccctaatagcacttttcatatccccgttaatgatgtacaccagatatggaacactggtgaacatgaagatttacaagctttagttgttatatctcgtcctccagtgaaagtgtttatgtacgatgactggtcgatgccacacacagctgccaaattgaagttcccgtattactgggatgagaaatgttatcagacaacaacgaggaaagacgagctttagccagaaaagtaggctatgcagttacttacatttagctagtgtttgatatgtttctgtattatgctggggtctagcttatttgaaggagtcaatgattgactaaaaacaggtcttgcagtcatacatagtacaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5034" stop="8229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5334" g_stop="5478" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5479" i_stop="5865" i_length="387">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5866" g_stop="5972" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="252" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5973" i_stop="6164" i_length="192">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6165" g_stop="6368" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="456" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6369" i_stop="6967" i_length="599">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6968" g_stop="7035" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="524" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7036" i_stop="7684" i_length="649">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7685" g_stop="7929" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="770" r_length="246" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E718602" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5334" e_stop="5478"/>
          <exon e_start="5866" e_stop="5972"/>
          <exon e_start="6165" e_stop="6368"/>
          <exon e_start="6968" e_stop="7035"/>
          <exon e_start="7685" e_stop="7929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCGAAACGACGGTACGGTGATGAAAAGTGGAGTTTCCAGTTTTCAGACTGATGCTACGATAATGATCCGCCATGGCGTCGTCATACTAGTTGCTCTTTTGTGGTTTTCCACAGCCGAAGCTTCTCAGTGCTCAATTAATGGCAAGTCTTCTCATCATTTCCTCTGTATGTGTATGAGAAAAATTTGATATGTATCATTATAAATTTTCACTAAGTAGTAGTGTAGTGGATGCAATGCACTGATATTCTGTTCTCACTAATTTAAAACCATGATTCTGCCTTCAAGTTAGGGAAAAATTCCTACTGGAGGAAATTCTGGGGAGCTTAGAAGCTGATTTGGATTAGTTGTGGCCCTTTTAATTCTAGAAGAAACAAGTTATTGGTTCCTTTGACTGAATTTCCAATGATCGATTGATAATATGCTCAATTGTTTTGAACTGTAAAGAAATTAATTAACATTTTCATTTGGTTGTTATTATGAGCAAATTTTTTTATCTTATAGAAGCTGTGATTTTCCTCATTTTGCAGGACTGCCACTCGTGAAGAATATCAGCGAGTTTCCACTACACAACTACGGGAGGTCAGGTTTATCTCACACTACAATTGCTGGTTCAGTCTTGCACGGCATGAAAGAGGTACTATTCTGCTTGCAGTTACTTAATTTTGACGATACTCGCTGACCTGAATAGAATGCAGATAGAAAGGATTTATATAGCCAGTTCTATCTAATTTGAGATTGAAATAAAGTTGATTGATAGTTAATATTGTCTATTTGGTTTAGACTGTTGCAATTTACTTTGGTTTCATTGCTATTATTTCATGAATAGATAGAGGTGTGGCTACAAACATTTGCCCCCGGATGTCGCACACCAATCCACAGGCACTCATGTGAAGAAGTTTTTATCGTCTTGAAGGGTCAAGGCACTCTCTATCTTGCTCCTAGTTCACATTCAAAGTACCCAGGAAACCCACAGGAGTTTCATATATTCCCTAATAGCACTTTTCATATCCCCGTTAATGATGTACACCAGGTATACATTCTGCCTTGTTCTATCATACTTGTGCTTAAAGTTATTCCTGCAAGATGCAAATAGAGTTCAATAACTTGATAAAGAAAACTTTGAGCTGATACATTTCTTAATGTTGCATCTAGTATTGTAGATAAAAACACTTACCAAGGGTTTCTAATTTTTACTTCTTGAATTATAATCAATCAGTTGACAAATTAATTGTTGAAAGGATTTAAGAATAAAATCAGTCAATATTTTACCAGGCTTCTAGGATAATCTTTGTCTCCACTTCATAATATCTTTATGTGTGAGATATGCTCTATCCCTTCATGGCTAATCTACTTGCTTTTCTTCATCTTTCCATGCTATTTTTGTTTGTGATGGATGAATCTGATGATTGGTTTACTTCTCCCAGCCAAGTAGTTTGCATTAGTCATCCTAGATGCATGCCTTCAATTAAGACAAAATTGTTAATATAGCGTGTTTAAAGACCTATACCAATGCTGCTTTTGCAGTCACAAAACATCAACTGAGCTGTCAATCGTATTACAACTTTTTAAATTAGGCTTCTTCTCTGTGCGCGTGTGACCGGAAGTATGCTTTAATTTTTGTAATTACAGATATGGAACACTGGTGAACATGAAGATTTACAAGCTTTAGTTGTTATATCTCGTCCTCCAGTGAAAGTGTAAGTAACATGTGTTGAACCATAAACTTCCAGTCCACCATTGCACAGATTATCATATACCATCAATTTGTCTGTGCTTAATATTTTTTGTTAACCTTCTTACTTTCATAATTTTGTTTCTATACTTTCCCCACGATGAAAGACTCCATATCAGTTTCATCACCTGATAAGGATCAGTACTTGGACAGTTGGACTTCATCAGAGTTGAATGGGAGTTGTTCTGATGCAGTTACACTCTGTGTTTCCTATGATTTACTATATGTTTTTAGACATTGATGTTTGTTCTTGTCAACATGTATCCCATTGTGTGTAACCCTTATTCCAGGAAAACAATAAACAAGAGGGGGAGGAGGAGGTCAAAATATTTTAGAATAGTTCATCATGGACCAAAACAACTACTATCTAATTTGGCCATTTGAAAGACTTGAGATCAGCCTGCCTGTGCATTTGGAAGCATCTTGTTTTGCTAAGTTCATGATGGTACTAGCTGCGTAAAGGCCTGCAAGGGATTTCTGAAATGTTGTTATTCATCTTTCCTTGTGTGGCTGGCTTGTCATGATTGACTGATAAATTTTCTATAATCCCAGATTGTGCATGCACGCTCTAATTATTACTTAACTGAGCTTTGCTTTCTCGCACTTGTTTTCAGGTTTATGTACGATGACTGGTCGATGCCACACACAGCTGCCAAATTGAAGTTCCCGTATTACTGGGATGAGAAATGTTATCAGACAACAACGAGGAAAGACGAGCTTTAGCCAGAAAAGTAGGCTATGCAGTTACTTACATTTAGCTAGTGTTTGATATGTTTCTGTATTATGCTGGGGTCTAGCTTATTTGAAGGAGTCAATGATTGACT-AAAACAGGTCTTGCAGTCATACATAGTACAAATGT</genome_strand>
        <mrna_strand>TTTTCTCGAAACGACGGTACGGTGATGAAAAGTGGAGTTTCCAGTTTTCAGACTGATGCTACGATAATGATCCGCCATGGCGTCGTCATACTAGTTGCTCTTTTGTGGTTTTCCACAGCCGAAGCTTCTCAGTGCTCAATTAATG...................................................................................................................................................................................................................................................................................................................................................................................................GACTGCCACTCGTGAAGAATATCAGCGAGTTTCCACTACACAACTACGGGAGGTCAGGTTTATCTCACACTACAATTGCTGGTTCAGTCTTGCACGGCATGAAAGAG................................................................................................................................................................................................ATAGAGGTGTGGCTACAAACATTTGCCCCCGGATGTCGCACACCAATCCACAGGCACTCATGTGAAGAAGTTTTTATCGTCTTGAAGGGTCAAGGCACTCTCTATCTTGCTCCTAGTTCACATTCAAAGTACCCAGGAAACCCACAGGAGTTTCATATATTCCCTAATAGCACTTTTCATATCCCCGTTAATGATGTACACCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGAACACTGGTGAACATGAAGATTTACAAGCTTTAGTTGTTATATCTCGTCCTCCAGTGAAAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGTACGATGACTGGTCGATGCCACACACAGCTGCCAAATTGAAGTTCCCGTATTACTGGGATGAGAAATGTTATCAGACAACAACGAGGAAAGACGAGCTTTAGCCAGAAAAGTAGGCTATGCAGTTACTTACATTTAGCTAGTGTTTGATATGTTTCTGTATTATGCTGGGGTCTAGCTTATTTGAAGGAGTCAATGATTGACTAAAAACAGGTCTTGCAGTCATACATAGTACAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400425" ref_strand="+" ref_description="SGN-E400425 [cSTC-8-P5]">
      <seq>gaaaagtggagtttccagttttcagactgatggtgcgataatgatccgccatggcgtcgtcatactagtttctcttctgtggttcgccacagccgaagcttctccgtgctcaattaatggcaagtcttctcatcatttcttctttatgtgtgtgagaaaatttgatatgtattggttataaattttcactaactagtagtgtnagtggatgcaatgcactgatattctgttctcactaatttaaaaaatcatgcttctgccttcaagttagggaaaatttcctattggaggaaattctggggagcttagaagctgatttgatttagttgtggcccttttaattctagaagaaacaagttattggttcctttgactgaaattccaatgattgattgataatatgctgaattattttgaactgtaaagaaattaattaacgttttcatttggttgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5060" stop="6112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5360" g_stop="5812" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E400425" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5360" e_stop="5812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGTGGAGTTTCCAGTTTTCAGACTGATGCTACGATAATGATCCGCCATGGCGTCGTCATACTAGTTGCTCTTTTGTGGTTTTCCACAGCCGAAGCTTCTCAGTGCTCAATTAATGGCAAGTCTTCTCATCATTTCCTCTGTATGTGTATGAGAAAAATTTGATATGTA-TCATTATAAATTTTCACTAAGTAGTAGTGT-AGTGGATGCAATGCACTGATATTCTGTTCTCACTAATTT--AAAACCATGATTCTGCCTTCAAGTTAGGGAAAAATTCCTACTGGAGGAAATTCTGGGGAGCTTAGAAGCTGATTTGGATTAGTTGTGGCCCTTTTAATTCTAGAAGAAACAAGTTATTGGTTCCTTTGACTGAATTTCCAATGATCGATTGATAATATGCTCAATTGTTTTGAACTGTAAAGAAATTAATTAACATTTTCATTTGGTTGTTA</genome_strand>
        <mrna_strand>GAAAAGTGGAGTTTCCAGTTTTCAGACTGATGGTGCGATAATGATCCGCCATGGCGTCGTCATACTAGTTTCTCTTCTGTGGTTCGCCACAGCCGAAGCTTCTCCGTGCTCAATTAATGGCAAGTCTTCTCATCATTTCTTCTTTATGTGTGTGAG-AAAATTTGATATGTATTGGTTATAAATTTTCACTAACTAGTAGTGTNAGTGGATGCAATGCACTGATATTCTGTTCTCACTAATTTAAAAAATCATGCTTCTGCCTTCAAGTTAGGGAAAATTTCCTATTGGAGGAAATTCTGGGGAGCTTAGAAGCTGATTTGATTTAGTTGTGGCCCTTTTAATTCTAGAAGAAACAAGTTATTGGTTCCTTTGACTGAAATTCCAATGATTGATTGATAATATGCTGAATTATTTTGAACTGTAAAGAAATTAATTAACGTTTTCATTTGGTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243206" ref_strand="+" ref_description="SGN-E243206 [cLEE-2-A6]">
      <seq>accaatccacaggcactcatgtgaagaagtttttatcgtcttgaagggtcaaggcactctctatcttgctcctagttcacattcaaagtacccaggaaacccacaggagtttcatatattccctaatagcacttttcatatccccgttaatgatgtacaccagatatggaacactggtgaacatgaagatttacaagctttagttgttatatctcgtcctccagtgaaagtgtttatgtacgatgactggtcgatgccacacacagctgccaaattgaagttcccgtattactgggatgagaaatgttatcagacaacaacgaggaaagacgagctttagccagaaaagtaggctatgcagttacttacatttagctagtgtttgatatgtttctgtattatgctggggtctagcttatttgaaggagtcaatgattgactaaaacaggtcttgcagtcatacatagtacaaatgtgttacccagtcaccacattaggagaactttagttgtactccctagctactaatacatgatttctttaattgagaaacattagtaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5906" stop="8318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6206" g_stop="6368" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6369" i_stop="6967" i_length="599">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6968" g_stop="7035" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="231" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7036" i_stop="7684" i_length="649">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7685" g_stop="8018" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="565" r_length="334" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E243206" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6206" e_stop="6368"/>
          <exon e_start="6968" e_stop="7035"/>
          <exon e_start="7685" e_stop="8018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAATCCACAGGCACTCATGTGAAGAAGTTTTTATCGTCTTGAAGGGTCAAGGCACTCTCTATCTTGCTCCTAGTTCACATTCAAAGTACCCAGGAAACCCACAGGAGTTTCATATATTCCCTAATAGCACTTTTCATATCCCCGTTAATGATGTACACCAGGTATACATTCTGCCTTGTTCTATCATACTTGTGCTTAAAGTTATTCCTGCAAGATGCAAATAGAGTTCAATAACTTGATAAAGAAAACTTTGAGCTGATACATTTCTTAATGTTGCATCTAGTATTGTAGATAAAAACACTTACCAAGGGTTTCTAATTTTTACTTCTTGAATTATAATCAATCAGTTGACAAATTAATTGTTGAAAGGATTTAAGAATAAAATCAGTCAATATTTTACCAGGCTTCTAGGATAATCTTTGTCTCCACTTCATAATATCTTTATGTGTGAGATATGCTCTATCCCTTCATGGCTAATCTACTTGCTTTTCTTCATCTTTCCATGCTATTTTTGTTTGTGATGGATGAATCTGATGATTGGTTTACTTCTCCCAGCCAAGTAGTTTGCATTAGTCATCCTAGATGCATGCCTTCAATTAAGACAAAATTGTTAATATAGCGTGTTTAAAGACCTATACCAATGCTGCTTTTGCAGTCACAAAACATCAACTGAGCTGTCAATCGTATTACAACTTTTTAAATTAGGCTTCTTCTCTGTGCGCGTGTGACCGGAAGTATGCTTTAATTTTTGTAATTACAGATATGGAACACTGGTGAACATGAAGATTTACAAGCTTTAGTTGTTATATCTCGTCCTCCAGTGAAAGTGTAAGTAACATGTGTTGAACCATAAACTTCCAGTCCACCATTGCACAGATTATCATATACCATCAATTTGTCTGTGCTTAATATTTTTTGTTAACCTTCTTACTTTCATAATTTTGTTTCTATACTTTCCCCACGATGAAAGACTCCATATCAGTTTCATCACCTGATAAGGATCAGTACTTGGACAGTTGGACTTCATCAGAGTTGAATGGGAGTTGTTCTGATGCAGTTACACTCTGTGTTTCCTATGATTTACTATATGTTTTTAGACATTGATGTTTGTTCTTGTCAACATGTATCCCATTGTGTGTAACCCTTATTCCAGGAAAACAATAAACAAGAGGGGGAGGAGGAGGTCAAAATATTTTAGAATAGTTCATCATGGACCAAAACAACTACTATCTAATTTGGCCATTTGAAAGACTTGAGATCAGCCTGCCTGTGCATTTGGAAGCATCTTGTTTTGCTAAGTTCATGATGGTACTAGCTGCGTAAAGGCCTGCAAGGGATTTCTGAAATGTTGTTATTCATCTTTCCTTGTGTGGCTGGCTTGTCATGATTGACTGATAAATTTTCTATAATCCCAGATTGTGCATGCACGCTCTAATTATTACTTAACTGAGCTTTGCTTTCTCGCACTTGTTTTCAGGTTTATGTACGATGACTGGTCGATGCCACACACAGCTGCCAAATTGAAGTTCCCGTATTACTGGGATGAGAAATGTTATCAGACAACAACGAGGAAAGACGAGCTTTAGCCAGAAAAGTAGGCTATGCAGTTACTTACATTTAGCTAGTGTTTGATATGTTTCTGTATTATGCTGGGGTCTAGCTTATTTGAAGGAGTCAATGATTGACTAAAACAGGTCTTGCAGTCATACATAGTACAAATGTGTTACCCAGTCACCACATTAGGAGAACTTTAGTTGTACTCCCTAGCTACTAATACATGATTTCTTTAATTGAGAAACATTAGTAAATGC</genome_strand>
        <mrna_strand>ACCAATCCACAGGCACTCATGTGAAGAAGTTTTTATCGTCTTGAAGGGTCAAGGCACTCTCTATCTTGCTCCTAGTTCACATTCAAAGTACCCAGGAAACCCACAGGAGTTTCATATATTCCCTAATAGCACTTTTCATATCCCCGTTAATGATGTACACCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGAACACTGGTGAACATGAAGATTTACAAGCTTTAGTTGTTATATCTCGTCCTCCAGTGAAAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGTACGATGACTGGTCGATGCCACACACAGCTGCCAAATTGAAGTTCCCGTATTACTGGGATGAGAAATGTTATCAGACAACAACGAGGAAAGACGAGCTTTAGCCAGAAAAGTAGGCTATGCAGTTACTTACATTTAGCTAGTGTTTGATATGTTTCTGTATTATGCTGGGGTCTAGCTTATTTGAAGGAGTCAATGATTGACTAAAACAGGTCTTGCAGTCATACATAGTACAAATGTGTTACCCAGTCACCACATTAGGAGAACTTTAGTTGTACTCCCTAGCTACTAATACATGATTTCTTTAATTGAGAAACATTAGTAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236541" ref_strand="+" ref_description="SGN-E236541 [cLED-13-O23]">
      <seq>tatcttgctcctagttcacattcaaagtacccaggaaacccacaggagtttcatatattccctaatagcacttttcatatccccgttaatgatgtacaccagatatggaacactggtgaacatgaagatttacaagctttagttgttatatctcgtcctccagtgaaagtgtttatgtacgatgactggtcgatgccacacacagctgccaaattgaagttcccgtattactgggatgagaaatgttatcagacaacaacgaggaaagacgagctttagccagaaaagtaggctatgcagttacttacatttagctagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5967" stop="8133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6267" g_stop="6368" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6369" i_stop="6967" i_length="599">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6968" g_stop="7035" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="170" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7036" i_stop="7684" i_length="649">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7685" g_stop="7833" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="319" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E236541" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6267" e_stop="6368"/>
          <exon e_start="6968" e_stop="7035"/>
          <exon e_start="7685" e_stop="7833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTGCTCCTAGTTCACATTCAAAGTACCCAGGAAACCCACAGGAGTTTCATATATTCCCTAATAGCACTTTTCATATCCCCGTTAATGATGTACACCAGGTATACATTCTGCCTTGTTCTATCATACTTGTGCTTAAAGTTATTCCTGCAAGATGCAAATAGAGTTCAATAACTTGATAAAGAAAACTTTGAGCTGATACATTTCTTAATGTTGCATCTAGTATTGTAGATAAAAACACTTACCAAGGGTTTCTAATTTTTACTTCTTGAATTATAATCAATCAGTTGACAAATTAATTGTTGAAAGGATTTAAGAATAAAATCAGTCAATATTTTACCAGGCTTCTAGGATAATCTTTGTCTCCACTTCATAATATCTTTATGTGTGAGATATGCTCTATCCCTTCATGGCTAATCTACTTGCTTTTCTTCATCTTTCCATGCTATTTTTGTTTGTGATGGATGAATCTGATGATTGGTTTACTTCTCCCAGCCAAGTAGTTTGCATTAGTCATCCTAGATGCATGCCTTCAATTAAGACAAAATTGTTAATATAGCGTGTTTAAAGACCTATACCAATGCTGCTTTTGCAGTCACAAAACATCAACTGAGCTGTCAATCGTATTACAACTTTTTAAATTAGGCTTCTTCTCTGTGCGCGTGTGACCGGAAGTATGCTTTAATTTTTGTAATTACAGATATGGAACACTGGTGAACATGAAGATTTACAAGCTTTAGTTGTTATATCTCGTCCTCCAGTGAAAGTGTAAGTAACATGTGTTGAACCATAAACTTCCAGTCCACCATTGCACAGATTATCATATACCATCAATTTGTCTGTGCTTAATATTTTTTGTTAACCTTCTTACTTTCATAATTTTGTTTCTATACTTTCCCCACGATGAAAGACTCCATATCAGTTTCATCACCTGATAAGGATCAGTACTTGGACAGTTGGACTTCATCAGAGTTGAATGGGAGTTGTTCTGATGCAGTTACACTCTGTGTTTCCTATGATTTACTATATGTTTTTAGACATTGATGTTTGTTCTTGTCAACATGTATCCCATTGTGTGTAACCCTTATTCCAGGAAAACAATAAACAAGAGGGGGAGGAGGAGGTCAAAATATTTTAGAATAGTTCATCATGGACCAAAACAACTACTATCTAATTTGGCCATTTGAAAGACTTGAGATCAGCCTGCCTGTGCATTTGGAAGCATCTTGTTTTGCTAAGTTCATGATGGTACTAGCTGCGTAAAGGCCTGCAAGGGATTTCTGAAATGTTGTTATTCATCTTTCCTTGTGTGGCTGGCTTGTCATGATTGACTGATAAATTTTCTATAATCCCAGATTGTGCATGCACGCTCTAATTATTACTTAACTGAGCTTTGCTTTCTCGCACTTGTTTTCAGGTTTATGTACGATGACTGGTCGATGCCACACACAGCTGCCAAATTGAAGTTCCCGTATTACTGGGATGAGAAATGTTATCAGACAACAACGAGGAAAGACGAGCTTTAGCCAGAAAAGTAGGCTATGCAGTTACTTACATTTAGCTAGT</genome_strand>
        <mrna_strand>TATCTTGCTCCTAGTTCACATTCAAAGTACCCAGGAAACCCACAGGAGTTTCATATATTCCCTAATAGCACTTTTCATATCCCCGTTAATGATGTACACCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGAACACTGGTGAACATGAAGATTTACAAGCTTTAGTTGTTATATCTCGTCCTCCAGTGAAAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGTACGATGACTGGTCGATGCCACACACAGCTGCCAAATTGAAGTTCCCGTATTACTGGGATGAGAAATGTTATCAGACAACAACGAGGAAAGACGAGCTTTAGCCAGAAAAGTAGGCTATGCAGTTACTTACATTTAGCTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233695" ref_strand="+" ref_description="SGN-E233695 [cLED-14-H23]">
      <seq>tatcttgctcctaggtcacattcaaagtacccaggaaacccacaggagtttcatatattccctaatagcacttttcatatccccgttaatgatgtacaccagatatggaacactggtgaacatgaagatttacaagctttaggtgctatatctcgtcctccagagaaagtgtttatgtacgatgactggtcgatgccacacacagctgccaaattgaagttcccgtattactgggatgagaaatgttattagacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5967" stop="8071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6267" g_stop="6368" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6369" i_stop="6967" i_length="599">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6968" g_stop="7035" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="170" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7036" i_stop="7684" i_length="649">
            <donor d_prob="0.863" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7685" g_stop="7771" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="257" r_length="87" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E233695" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>257</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6267" e_stop="6368"/>
          <exon e_start="6968" e_stop="7035"/>
          <exon e_start="7685" e_stop="7771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTGCTCCTAGTTCACATTCAAAGTACCCAGGAAACCCACAGGAGTTTCATATATTCCCTAATAGCACTTTTCATATCCCCGTTAATGATGTACACCAGGTATACATTCTGCCTTGTTCTATCATACTTGTGCTTAAAGTTATTCCTGCAAGATGCAAATAGAGTTCAATAACTTGATAAAGAAAACTTTGAGCTGATACATTTCTTAATGTTGCATCTAGTATTGTAGATAAAAACACTTACCAAGGGTTTCTAATTTTTACTTCTTGAATTATAATCAATCAGTTGACAAATTAATTGTTGAAAGGATTTAAGAATAAAATCAGTCAATATTTTACCAGGCTTCTAGGATAATCTTTGTCTCCACTTCATAATATCTTTATGTGTGAGATATGCTCTATCCCTTCATGGCTAATCTACTTGCTTTTCTTCATCTTTCCATGCTATTTTTGTTTGTGATGGATGAATCTGATGATTGGTTTACTTCTCCCAGCCAAGTAGTTTGCATTAGTCATCCTAGATGCATGCCTTCAATTAAGACAAAATTGTTAATATAGCGTGTTTAAAGACCTATACCAATGCTGCTTTTGCAGTCACAAAACATCAACTGAGCTGTCAATCGTATTACAACTTTTTAAATTAGGCTTCTTCTCTGTGCGCGTGTGACCGGAAGTATGCTTTAATTTTTGTAATTACAGATATGGAACACTGGTGAACATGAAGATTTACAAGCTTTAGTTGTTATATCTCGTCCTCCAGTGAAAGTGTAAGTAACATGTGTTGAACCATAAACTTCCAGTCCACCATTGCACAGATTATCATATACCATCAATTTGTCTGTGCTTAATATTTTTTGTTAACCTTCTTACTTTCATAATTTTGTTTCTATACTTTCCCCACGATGAAAGACTCCATATCAGTTTCATCACCTGATAAGGATCAGTACTTGGACAGTTGGACTTCATCAGAGTTGAATGGGAGTTGTTCTGATGCAGTTACACTCTGTGTTTCCTATGATTTACTATATGTTTTTAGACATTGATGTTTGTTCTTGTCAACATGTATCCCATTGTGTGTAACCCTTATTCCAGGAAAACAATAAACAAGAGGGGGAGGAGGAGGTCAAAATATTTTAGAATAGTTCATCATGGACCAAAACAACTACTATCTAATTTGGCCATTTGAAAGACTTGAGATCAGCCTGCCTGTGCATTTGGAAGCATCTTGTTTTGCTAAGTTCATGATGGTACTAGCTGCGTAAAGGCCTGCAAGGGATTTCTGAAATGTTGTTATTCATCTTTCCTTGTGTGGCTGGCTTGTCATGATTGACTGATAAATTTTCTATAATCCCAGATTGTGCATGCACGCTCTAATTATTACTTAACTGAGCTTTGCTTTCTCGCACTTGTTTTCAGGTTTATGTACGATGACTGGTCGATGCCACACACAGCTGCCAAATTGAAGTTCCCGTATTACTGGGATGAGAAATGTTATCAGACAAC</genome_strand>
        <mrna_strand>TATCTTGCTCCTAGGTCACATTCAAAGTACCCAGGAAACCCACAGGAGTTTCATATATTCCCTAATAGCACTTTTCATATCCCCGTTAATGATGTACACCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGAACACTGGTGAACATGAAGATTTACAAGCTTTAGGTGCTATATCTCGTCCTCCAGAGAAAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGTACGATGACTGGTCGATGCCACACACAGCTGCCAAATTGAAGTTCCCGTATTACTGGGATGAGAAATGTTATTAGACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261690" ref_strand="+" ref_description="SGN-E261690 [cLEG-61-M20]">
      <seq>ccgtattactgggatgagaaatgttatcagacaacaacgaggaaagacgagctttagccagaaaagtaggctatgcagttacttacatttagctagtgtttgatatgtttctgtattatgctggggtctagcttatttgaaggagtcaatgattgactaaaacaggtcttgcagtcatacatagtacaaatgtgttacccagtcaccacattaggagaactttagttgtactccctagctactaatacatgatttctttaattgagaaacattagtaaatgcggtttctgtgttgctgttattgcatttttcgactccttattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7437" stop="8359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7737" g_stop="8056" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="324" polyA_stop="334"/>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E261690" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7737" e_stop="8056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTATTACTGGGATGAGAAATGTTATCAGACAACAACGAGGAAAGACGAGCTTTAGCCAGAAAAGTAGGCTATGCAGTTACTTACATTTAGCTAGTGTTTGATATGTTTCTGTATTATGCTGGGGTCTAGCTTATTTGAAGGAGTCAATGATTGACTAAAACAGGTCTTGCAGTCATACATAGTACAAATGTGTTACCCAGTCACCACATTAGGAGAACTTTAGTTGTACTCCCTAGCTACTAATACATGATTTCTTTAATTGAGAAACATTAGTAAATGCGGTTTCTGTGTTGCTGTTATTGCATTTTTCGACTCCTT</genome_strand>
        <mrna_strand>CCGTATTACTGGGATGAGAAATGTTATCAGACAACAACGAGGAAAGACGAGCTTTAGCCAGAAAAGTAGGCTATGCAGTTACTTACATTTAGCTAGTGTTTGATATGTTTCTGTATTATGCTGGGGTCTAGCTTATTTGAAGGAGTCAATGATTGACTAAAACAGGTCTTGCAGTCATACATAGTACAAATGTGTTACCCAGTCACCACATTAGGAGAACTTTAGTTGTACTCCCTAGCTACTAATACATGATTTCTTTAATTGAGAAACATTAGTAAATGCGGTTTCTGTGTTGCTGTTATTGCATTTTTCGACTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316344" ref_strand="+" ref_description="SGN-E316344 [cTOA-25-A20]">
      <seq>agagatattattatgggtttgaagaatgacttggtggtgtacacaagattagaatgtgagagctgtgaggaaatgacttgttgtatagagaaagctaaagaagaaggagcagatctggtggagctttgcattgacgacttcactttctctgacatttcacaacttgaagaactactcaagcaaagaagtttaccatccatagtttctttcaggccaaaatctccgataaattctgagggcaagaaaacatgtatccaagttctcaaattagctgtggaattggacgttgagttcgtcgaagtcgacactcaggttgtctgccatcaagtggttgctgaattgatgaagagccgatcaaatagcaaaataattgcttctacttatgtcaatggtggaaaccctactaaagacacactttgtaattccatcataaacctgcagtccacaggagcagatatcatcaaacttgtcattgatgtagcttatattacagacgttgcaccagttttccatatgcttacacattctcaggtccctctaattgttagggcagcaggggatagaggacttataagccaactattgggtccaaaatacggtgctttctttgtttgtggatctttgggaggcaaatacacccctggcttgccatctttgaccaccattaaacaggtttataaactccaatatgtcaacccagatactagaatttttggtgttatctcaaatcctggtggccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16141" stop="17781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16441" g_stop="16652" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16653" i_stop="16884" i_length="232">
            <donor d_prob="0.374" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16885" g_stop="16984" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="312" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16985" i_stop="17052" i_length="68">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17053" g_stop="17481" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="741" r_length="429" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E316344" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16441" e_stop="16652"/>
          <exon e_start="16885" e_stop="16984"/>
          <exon e_start="17053" e_stop="17481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATATTATTATGGGTTTGAAGAATGACTTGGTGGTGTACACAAGATTAGAATGTGAGAGCTGTGAGGAAATGACTTGTTGTATAGAGAAAGCTAAAGAAGAAGGAGCAGATCTGGTGGAGCTTTGCATTGACGACTTCACTTTCTCTGACATTTCACAACTTGAAGAACTACTCAAGCAAAGAAGTTTACCATCCATAGTTTCTTTCAGGTAATCCAGAAATGGTGGGTTTAATTTTGATTAGCTAAGATTTTGTGAGGAGGAGATGGAGTGAGTCCCTTTTTTTGTTTGATTTCAAGGCACGTGAAACCCACACTACTCGTGGAGAGAGAGAGAAAAAAAAAAGTATTTATTATTACTCTCATCTACTTGTCATTACTACTCTTAACTAATTATATTATATCCATCTCGCATGCATTTATTGGCTGTTCTAATATGTCAGGCCAAAATCTCCGATAAATTCTGAGGGCAAGAAAACATGTATCCAAGTTCTCAAATTAGCTGTGGAATTGGACGTTGAGTTCGTCGAAGTCGACACTCAGGTCATTTCACTTCCATCCATTTAAACCTAACCGAAAATCAAAATTAAATTAAATTTTTGTTTTTTTAGGTTGTCTGCCATCAAGTGGTTGCTGAATTGATGAAGAGCCGATCAAATAGCAAAATAATTGCTTCTACTTATGTCAATGGTGGAAACCCTACTAAAGACACACTTTGTAATTCCATCATAAACCTGCAGTCCACAGGAGCAGATATCATCAAACTTGTCATTGATGTAGCTTATATTACAGACGTTGCACCAGTTTTCCATATGCTTACACATTCTCAGGTCCCTCTAATTGTTAGGGCAGCAGGGGATAGAGGACTTATAAGCCAACTATTGGGTCCAAAATACGGTGCTTTCTTTGTTTGTGGATCTTTGGGAGGCAAATACACCCCTGGCTTGCCATCTTTGACCACCATTAAACAGGTTTATAAACTCCAATATGTCAACCCAGATACTAGAATTTTTGGTGTTATCTCAAATCCTGTTGGCCAT</genome_strand>
        <mrna_strand>AGAGATATTATTATGGGTTTGAAGAATGACTTGGTGGTGTACACAAGATTAGAATGTGAGAGCTGTGAGGAAATGACTTGTTGTATAGAGAAAGCTAAAGAAGAAGGAGCAGATCTGGTGGAGCTTTGCATTGACGACTTCACTTTCTCTGACATTTCACAACTTGAAGAACTACTCAAGCAAAGAAGTTTACCATCCATAGTTTCTTTCAG........................................................................................................................................................................................................................................GCCAAAATCTCCGATAAATTCTGAGGGCAAGAAAACATGTATCCAAGTTCTCAAATTAGCTGTGGAATTGGACGTTGAGTTCGTCGAAGTCGACACTCAG....................................................................GTTGTCTGCCATCAAGTGGTTGCTGAATTGATGAAGAGCCGATCAAATAGCAAAATAATTGCTTCTACTTATGTCAATGGTGGAAACCCTACTAAAGACACACTTTGTAATTCCATCATAAACCTGCAGTCCACAGGAGCAGATATCATCAAACTTGTCATTGATGTAGCTTATATTACAGACGTTGCACCAGTTTTCCATATGCTTACACATTCTCAGGTCCCTCTAATTGTTAGGGCAGCAGGGGATAGAGGACTTATAAGCCAACTATTGGGTCCAAAATACGGTGCTTTCTTTGTTTGTGGATCTTTGGGAGGCAAATACACCCCTGGCTTGCCATCTTTGACCACCATTAAACAGGTTTATAAACTCCAATATGTCAACCCAGATACTAGAATTTTTGGTGTTATCTCAAATCCTGGTGGCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329052" ref_strand="+" ref_description="SGN-E329052 [cTOC-24-M20]">
      <seq>acttggtggtgtacacaagattagaatgtgagagctgtgaggaaatgacttgttgtatagagaaagctaaagaagaaggagcagatctggtggagctttgcattgacgacttcactttctctgacatttcacaacttgaagaactactcaagcaaagaagtttaccatccatagtttctttcaggccaaaatctccgataaattctgagggcaagaaaacatgtatccaagttctcaaattagctgtggaattggacgttgagttcgtcgaagtcgacactcaggttgtctgccatcaagtggttgctgaattgatgaagagccgatcaaatagcaaaataattgcttctacttatgtcaatggtggaaaccctactaaagacacactttgtaattccatcataaacctgcagtccacaggagcagatatcatcaaacttgtcattgatgtagcttatattacagacgttgcaccagttttccatatgcttacacattctcaggtccctctaattgttagggcagcaggggatagaggacttataagccaactattgggtccaaaatacggtgctttctttgtttgtggatctttgggaggcaaatacacccctggcttgccatctttgaccaccattaaacaggtttataaactccaatatgtcaacccagatactagaattttttgtgttatctcaaatcctgttggccatagcaagggaccccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16169" stop="17797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16469" g_stop="16652" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16653" i_stop="16884" i_length="232">
            <donor d_prob="0.374" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16885" g_stop="16984" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="284" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16985" i_stop="17052" i_length="68">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17053" g_stop="17497" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="729" r_length="445" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E329052" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16469" e_stop="16652"/>
          <exon e_start="16885" e_stop="16984"/>
          <exon e_start="17053" e_stop="17497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGGTGGTGTACACAAGATTAGAATGTGAGAGCTGTGAGGAAATGACTTGTTGTATAGAGAAAGCTAAAGAAGAAGGAGCAGATCTGGTGGAGCTTTGCATTGACGACTTCACTTTCTCTGACATTTCACAACTTGAAGAACTACTCAAGCAAAGAAGTTTACCATCCATAGTTTCTTTCAGGTAATCCAGAAATGGTGGGTTTAATTTTGATTAGCTAAGATTTTGTGAGGAGGAGATGGAGTGAGTCCCTTTTTTTGTTTGATTTCAAGGCACGTGAAACCCACACTACTCGTGGAGAGAGAGAGAAAAAAAAAAGTATTTATTATTACTCTCATCTACTTGTCATTACTACTCTTAACTAATTATATTATATCCATCTCGCATGCATTTATTGGCTGTTCTAATATGTCAGGCCAAAATCTCCGATAAATTCTGAGGGCAAGAAAACATGTATCCAAGTTCTCAAATTAGCTGTGGAATTGGACGTTGAGTTCGTCGAAGTCGACACTCAGGTCATTTCACTTCCATCCATTTAAACCTAACCGAAAATCAAAATTAAATTAAATTTTTGTTTTTTTAGGTTGTCTGCCATCAAGTGGTTGCTGAATTGATGAAGAGCCGATCAAATAGCAAAATAATTGCTTCTACTTATGTCAATGGTGGAAACCCTACTAAAGACACACTTTGTAATTCCATCATAAACCTGCAGTCCACAGGAGCAGATATCATCAAACTTGTCATTGATGTAGCTTATATTACAGACGTTGCACCAGTTTTCCATATGCTTACACATTCTCAGGTCCCTCTAATTGTTAGGGCAGCAGGGGATAGAGGACTTATAAGCCAACTATTGGGTCCAAAATACGGTGCTTTCTTTGTTTGTGGATCTTTGGGAGGCAAATACACCCCTGGCTTGCCATCTTTGACCACCATTAAACAGGTTTATAAACTCCAATATGTCAACCCAGATACTAGAATTTTTGGTGTTATCTCAAATCCTGTTGGCCATAGCAAGGGACCCCTTC</genome_strand>
        <mrna_strand>ACTTGGTGGTGTACACAAGATTAGAATGTGAGAGCTGTGAGGAAATGACTTGTTGTATAGAGAAAGCTAAAGAAGAAGGAGCAGATCTGGTGGAGCTTTGCATTGACGACTTCACTTTCTCTGACATTTCACAACTTGAAGAACTACTCAAGCAAAGAAGTTTACCATCCATAGTTTCTTTCAG........................................................................................................................................................................................................................................GCCAAAATCTCCGATAAATTCTGAGGGCAAGAAAACATGTATCCAAGTTCTCAAATTAGCTGTGGAATTGGACGTTGAGTTCGTCGAAGTCGACACTCAG....................................................................GTTGTCTGCCATCAAGTGGTTGCTGAATTGATGAAGAGCCGATCAAATAGCAAAATAATTGCTTCTACTTATGTCAATGGTGGAAACCCTACTAAAGACACACTTTGTAATTCCATCATAAACCTGCAGTCCACAGGAGCAGATATCATCAAACTTGTCATTGATGTAGCTTATATTACAGACGTTGCACCAGTTTTCCATATGCTTACACATTCTCAGGTCCCTCTAATTGTTAGGGCAGCAGGGGATAGAGGACTTATAAGCCAACTATTGGGTCCAAAATACGGTGCTTTCTTTGTTTGTGGATCTTTGGGAGGCAAATACACCCCTGGCTTGCCATCTTTGACCACCATTAAACAGGTTTATAAACTCCAATATGTCAACCCAGATACTAGAATTTTTTGTGTTATCTCAAATCCTGTTGGCCATAGCAAGGGACCCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453478" ref_strand="+" ref_description="SGN-E453478 [cSTS-20-K7]">
      <seq>aagctgtgaggaaatggcagcttctatgcacaaagctaaagaagaaggagcagatctggtggagctttgcattgatgacttcattttctctcacatttcacaacttgaactactactcaaacaaagaagtttaccatccatcgtttctttcaggccaaaatctgcgataaattctgactggaagaaaacatgtatccaagttctcaaattagctgttgaattggacgttgagttcgtcgaagtcgacactgaggttgtttcccatcaagtggttgctgaattgatgagcagccgatcaaatagcaagataattgcttctacttatgtcattaatgctggaaaccctcctactaaagacacactttgtaattccatcataaacctgcagtccacaggagcagatatcatcaaacttgtcattgatgtagattatattacagatgttgcaccagttttccatatgcttacgcattctcaggtccctctaattgctagggcagcaggggaatagaggtcttataagccaactattgggtccaaaatacggtgctttcttttgtttgtggatctttggcangcaaatccacccctggcttgcctcctttgaccagcattaaacaggtttataaactccaatatgtcaacccagatctagagttttttggtgtaatctcaaatcctgttggccatagcaagggcccccttctgcacaaccctgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16221" stop="17812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16500" g_stop="16652" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16653" i_stop="16884" i_length="232">
            <donor d_prob="0.374" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16885" g_stop="16984" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="253" r_length="100" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16985" i_stop="17052" i_length="68">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17053" g_stop="17512" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="721" r_length="468" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E453478" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16500" e_stop="16652"/>
          <exon e_start="16885" e_stop="16984"/>
          <exon e_start="17053" e_stop="17512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTGTGAGGAAATGACTTGTTGTATAGAGAAAGCTAAAGAAGAAGGAGCAGATCTGGTGGAGCTTTGCATTGACGACTTCACTTTCTCTGACATTTCACAACTTGAAGAACTACTCAAGCAAAGAAGTTTACCATCCATAGTTTCTTTCAGGTAATCCAGAAATGGTGGGTTTAATTTTGATTAGCTAAGATTTTGTGAGGAGGAGATGGAGTGAGTCCCTTTTTTTGTTTGATTTCAAGGCACGTGAAACCCACACTACTCGTGGAGAGAGAGAGAAAAAAAAAAGTATTTATTATTACTCTCATCTACTTGTCATTACTACTCTTAACTAATTATATTATATCCATCTCGCATGCATTTATTGGCTGTTCTAATATGTCAGGCCAAAATCTCCGATAAATTCTGAGGGCAAGAAAACATGTATCCAAGTTCTCAAATTAGCTGTGGAATTGGACGTTGAGTTCGTCGAAGTCGACACTCAGGTCATTTCACTTCCATCCATTTAAACCTAACCGAAAATCAAAATTAAATTAAATTTTTGTTTTTTTAGGTTGTCTGCCATCAAGTGGTTGCTGAATTGATGAAGAGCCGATCAAATAGCAAAATAATTGCTTCTACTTATGTC---AATGGTGGAAA--C-CCTACTAAAGACACACTTTGTAATTCCATCATAAACCTGCAGTCCACAGGAGCAGATATCATCAAACTTGTCATTGATGTAGCTTATATTACAGACGTTGCACCAGTTTTCCATATGCTTACACATTCTCAGGTCCCTCTAATTGTTAGGGCAGCAGGGG-ATAGAGGACTTATAAGCCAACTATTGGGTCCAAAATACGGTGCTTTC-TTTGTTTGTGGATCTTTGGGAGGCAAATACACCCCTGGCTTGCCATCTTTGACCACCATTAAACAGGTTTATAAACTCCAATATGTCAACCCAGATACTAGA-ATTTTTGGTGTTATCTCAAATCCTGTTGGCCATAGCAAGGGACCCCTTCTACACAACCCCGCCT</genome_strand>
        <mrna_strand>AAGCTGTGAGGAAATGGCAGCTTCTATGCACAAAGCTAAAGAAGAAGGAGCAGATCTGGTGGAGCTTTGCATTGATGACTTCATTTTCTCTCACATTTCACAACTTGAACTACTACTCAAACAAAGAAGTTTACCATCCATCGTTTCTTTCAG........................................................................................................................................................................................................................................GCCAAAATCTGCGATAAATTCTGACTGGAAGAAAACATGTATCCAAGTTCTCAAATTAGCTGTTGAATTGGACGTTGAGTTCGTCGAAGTCGACACTGAG....................................................................GTTGTTTCCCATCAAGTGGTTGCTGAATTGATGAGCAGCCGATCAAATAGCAAGATAATTGCTTCTACTTATGTCATTAATGCTGGAAACCCTCCTACTAAAGACACACTTTGTAATTCCATCATAAACCTGCAGTCCACAGGAGCAGATATCATCAAACTTGTCATTGATGTAGATTATATTACAGATGTTGCACCAGTTTTCCATATGCTTACGCATTCTCAGGTCCCTCTAATTGCTAGGGCAGCAGGGGAATAGAGGTCTTATAAGCCAACTATTGGGTCCAAAATACGGTGCTTTCTTTTGTTTGTGGATCTTTGGCANGCAAATCCACCCCTGGCTTGCCTCCTTTGACCAGCATTAAACAGGTTTATAAACTCCAATATGTCAACCCAGAT-CTAGAGTTTTTTGGTGTAATCTCAAATCCTGTTGGCCATAGCAAGGGCCCCCTTCTGCACAACCCTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E399707" ref_strand="+" ref_description="SGN-E399707 [cSTC-2-K15]">
      <seq>gaagaaggagcagatctggtggagctttgcattgatgacttcattttctctcacatttcacaacttgaactactactcaaacaaagaagtttaccatccatcgtttctttcaggccaaaatctgcgataaattctgactggaagaaaacatgtatccaagttctcaaattagctgttgaattggacgttgagttcgtcgaagtcgacactgaggttgtttcccatcaagtggttgctgaattgatgagcagccgatcaaatagcaagataattgcttctacttatgtcattaatgctggaaaccctcctactaaagacacactttgtaattccatcataaacctgcagtccacaggagcagatatcatcaaacttgtcattgatgtagattatattacagatgttgcaccagttttccatatgcttacgcattctcaggtccctctaattgctagggcagcaggggatagaggtcttataagccaactattgggtccaaaatacggtgctttctttgtttgtggatctttggcaggcaaatccacccctggcttgcctcctttgaccagcattaaacaggtttataaactccaatatgtcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16240" stop="17736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16540" g_stop="16652" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16653" i_stop="16884" i_length="232">
            <donor d_prob="0.374" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16885" g_stop="16984" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="213" r_length="100" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16985" i_stop="17052" i_length="68">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17053" g_stop="17436" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="603" r_length="390" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E399707" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E399707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16540" e_stop="16652"/>
          <exon e_start="16885" e_stop="16984"/>
          <exon e_start="17053" e_stop="17436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGGAGCAGATCTGGTGGAGCTTTGCATTGACGACTTCACTTTCTCTGACATTTCACAACTTGAAGAACTACTCAAGCAAAGAAGTTTACCATCCATAGTTTCTTTCAGGTAATCCAGAAATGGTGGGTTTAATTTTGATTAGCTAAGATTTTGTGAGGAGGAGATGGAGTGAGTCCCTTTTTTTGTTTGATTTCAAGGCACGTGAAACCCACACTACTCGTGGAGAGAGAGAGAAAAAAAAAAGTATTTATTATTACTCTCATCTACTTGTCATTACTACTCTTAACTAATTATATTATATCCATCTCGCATGCATTTATTGGCTGTTCTAATATGTCAGGCCAAAATCTCCGATAAATTCTGAGGGCAAGAAAACATGTATCCAAGTTCTCAAATTAGCTGTGGAATTGGACGTTGAGTTCGTCGAAGTCGACACTCAGGTCATTTCACTTCCATCCATTTAAACCTAACCGAAAATCAAAATTAAATTAAATTTTTGTTTTTTTAGGTTGTCTGCCATCAAGTGGTTGCTGAATTGATGAAGAGCCGATCAAATAGCAAAATAATTGCTTCTACTTATGTC---AATGGTGGAAA--C-CCTACTAAAGACACACTTTGTAATTCCATCATAAACCTGCAGTCCACAGGAGCAGATATCATCAAACTTGTCATTGATGTAGCTTATATTACAGACGTTGCACCAGTTTTCCATATGCTTACACATTCTCAGGTCCCTCTAATTGTTAGGGCAGCAGGGGATAGAGGACTTATAAGCCAACTATTGGGTCCAAAATACGGTGCTTTCTTTGTTTGTGGATCTTTGGGAGGCAAATACACCCCTGGCTTGCCATCTTTGACCACCATTAAACAGGTTTATAAACTCCAATATGTCAAC</genome_strand>
        <mrna_strand>GAAGAAGGAGCAGATCTGGTGGAGCTTTGCATTGATGACTTCATTTTCTCTCACATTTCACAACTTGAACTACTACTCAAACAAAGAAGTTTACCATCCATCGTTTCTTTCAG........................................................................................................................................................................................................................................GCCAAAATCTGCGATAAATTCTGACTGGAAGAAAACATGTATCCAAGTTCTCAAATTAGCTGTTGAATTGGACGTTGAGTTCGTCGAAGTCGACACTGAG....................................................................GTTGTTTCCCATCAAGTGGTTGCTGAATTGATGAGCAGCCGATCAAATAGCAAGATAATTGCTTCTACTTATGTCATTAATGCTGGAAACCCTCCTACTAAAGACACACTTTGTAATTCCATCATAAACCTGCAGTCCACAGGAGCAGATATCATCAAACTTGTCATTGATGTAGATTATATTACAGATGTTGCACCAGTTTTCCATATGCTTACGCATTCTCAGGTCCCTCTAATTGCTAGGGCAGCAGGGGATAGAGGTCTTATAAGCCAACTATTGGGTCCAAAATACGGTGCTTTCTTTGTTTGTGGATCTTTGGCAGGCAAATCCACCCCTGGCTTGCCTCCTTTGACCAGCATTAAACAGGTTTATAAACTCCAATATGTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482506" ref_strand="+" ref_description="SGN-E482506 [cSTD-22-M22]">
      <seq>tgcctcctttgaccagcattaaacaggtttataaactccaatatgtcaacccagatactagagtttttggtgtaatctcaaatcctgttggccatagcaagggcccccttctgcacaaccctgcctttaggcatacaggatacaatggaatatatgtcccactactagttgacaatgtcaaggaattttttcgcgttttctcatgtaatgactatgctggtttcagtgttggtatcccacataaggaagcagcagtacgctgctgtgatgaagttgatccacttgctaagtctataggagctgtaaacacaattataaggaggccttctgacggcaagctcattggttataatacaaattgtgaggcttgtgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17087" stop="18791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17387" g_stop="17612" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17613" i_stop="17680" i_length="68">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17681" g_stop="17744" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="290" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17745" i_stop="18406" i_length="662">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18407" g_stop="18491" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="375" r_length="85" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E482506" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E482506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17387" e_stop="17612"/>
          <exon e_start="17681" e_stop="17744"/>
          <exon e_start="18407" e_stop="18491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCATCTTTGACCACCATTAAACAGGTTTATAAACTCCAATATGTCAACCCAGATACTAGAATTTTTGGTGTTATCTCAAATCCTGTTGGCCATAGCAAGGGACCCCTTCTACACAACCCCGCCTTTAGGCATACAGGATACAATGGAATATATGTCCCACTACTAGTTGACAATGTCAAGGAATTCTTTCGGGTTTTCTCATGCAATGACTATGCTGGTTTCAGGTAATTAAGCTAATCTTTGTTTTTTCATGCTTATTTCCTTTTGATACAAACGTGCCTGCCTATTGTAGTGTTGGTATCCCACATAAGGAAGCAGCAGTACGGTGTTGTGATGAAGTTGATCCACTTGCTAAGGTTTGATTAACATACATAAACTATGCTTTCTATAATTTGCTTTTCCTGTTTAAAATATCAACATGTTCAATTTTCATAACTCAGCAGCTCAATGTGGTTTATATAGCATACAGGGTGTATGCAAATCGGTGTGTTGTGTGACTTACCTTCAGGTTTTGGGAGTTGAAGAATCCATAAAAGCACAAACTTTTTGGGATGTCTTTGCTGAAGCTAGTTCAGCATTAATACTTCTTATATAATGACAACTTAATTTGTTTATATATGTGTACAGAGGCCGCCTGCATATAAACATAGGAAGCAGAAAGTACTACCTTTGAATCACCCTAGAATATTAAGCAGAATATTATCAGTTTTATTTTCATAAATCGACGAATGAATAACTAGCCTTGAAGCCTAAGTAGAGATATTACCCTGGTTGGCCATCAACTTATGAAAAGAAAAAAAAAAAGGAAAGAAGTTGTGTTTCTCATATATTCTCACATGGACTAGAATGCTATTGTCCTTGCATGGAAGCAGAATTTGTTATATAGATTAGCTCTGTATCTTGAAAGTTCAGATGCCATTTCTGTACAATACTTCTTTCTGTGTAACCATTCCAGAATATTTTGTGGCTAAATTATCTTATTTTTAAACTTTCTAACTGTATCATGCTTCGGAATCAGTCTATAGGAGCTGTAAACACAATTATAAGGAGGCCTTCTGACGGCAAGCTCATTGGTTATAATACAGATTGTGAGGCTTGTGTGA</genome_strand>
        <mrna_strand>TGCCTCCTTTGACCAGCATTAAACAGGTTTATAAACTCCAATATGTCAACCCAGATACTAGAGTTTTTGGTGTAATCTCAAATCCTGTTGGCCATAGCAAGGGCCCCCTTCTGCACAACCCTGCCTTTAGGCATACAGGATACAATGGAATATATGTCCCACTACTAGTTGACAATGTCAAGGAATTTTTTCGCGTTTTCTCATGTAATGACTATGCTGGTTTCAG....................................................................TGTTGGTATCCCACATAAGGAAGCAGCAGTACGCTGCTGTGATGAAGTTGATCCACTTGCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATAGGAGCTGTAAACACAATTATAAGGAGGCCTTCTGACGGCAAGCTCATTGGTTATAATACAAATTGTGAGGCTTGTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699939" ref_strand="+" ref_description="SGN-E699939 [FA11CF05]">
      <seq>ctttcttcttcgacggtcctccccaacttccatacagattcacctgcactaaacatatcaatcaccataggaatacaaccaagatgatgatcagaatcagaagcagagatgggttagagcgagtcacaattgacaacccacatgccacaattgcccaactcaagtcccaaatcgaatcccaacttcgagttccagttcaatcgcaaaccctatcttccaatcagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggacaaccctcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagcccgccggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcactgcgaactcgtttccttcgatcgtgatgccgccaatgcctttcaacattatgtcaatgaaacactcgcctttgctgtcaaaaggggtggttttatgtatggtacagtatcccctgaaggcaaagtggaagtccattttatttatgagccgccccagcaagggaccgaggaaaatttgttgcttctacgcgatcctgatgaggagaaattggtggatgctatagctattggattagggatgaggaaagtaaggtttatatttactcagacaattagtcaggataaaaaggattacactatgtccactgcagaggtctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25944" stop="27322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26244" g_stop="27022" g_length="779"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="779" r_length="779" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E699939" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26244" e_stop="27022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTTCTTCGACGGTCCTCCCCAACTTCCATACAGATTCACCTGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTA</genome_strand>
        <mrna_strand>CTTTCTTCTTCGACGGTCCTCCCCAACTTCCATACAGATTCACCTGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAAGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCCACTGCAGAGGTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253538" ref_strand="+" ref_description="SGN-E253538 [cLEG-24-O22]">
      <seq>gcgacggtcctccccaacttccatacagattcacctgcactaaacatatcaatcaccataggaatacaaccaagatgatgatcagaatcagaagcagagatgggttagagcgagtcacaattgacaacccacatgccacaattgcccaactcaagtcccaaatcgaatcccaacttcgagttccagttcaatcgcaaaccctatcttccaatcagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggacaaccctcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagcccgccggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcactgcgaactcgtttccttcgatcgtgatgccgccaatgcctttcaacattatgtcaatgaaacactcgcctttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25954" stop="27079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26253" g_stop="26779" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E253538" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26253" e_stop="26779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACGGTCCTCCCCAACTTCCATACAGATTCACCTGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCT</genome_strand>
        <mrna_strand>GCGACGGTCCTCCCCAACTTCCATACAGATTCACCTGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335646" ref_strand="+" ref_description="SGN-E335646 [cTOE-8-F13]">
      <seq>tcctccccaacttccatacagattcacctgcactaaacatatcaatcaccataggaatacaaccaagatgatgatcagaatcagaagcagagatgggttagagcgagtcacaattgacaacccacatgccacaattgcccaactcaagtcccaaatcgaatcccaacttcgagttccagttcaatcgcaaaccctatcttccaatcagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggacaaccctcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagcnccgcggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25960" stop="27005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26260" g_stop="26705" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E335646" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26260" e_stop="26705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCCCAACTTCCATACAGATTCACCTGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACT</genome_strand>
        <mrna_strand>TCCTCCCCAACTTCCATACAGATTCACCTGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCNCCGCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272501" ref_strand="+" ref_description="SGN-E272501 [cLEM-19-P14]">
      <seq>cccaacttccatacagattcacctgcactaaacatatcaatcaccataggaatacaaccaagatgatgatcagaatcagaagcagagatgggttagagcgagtcacaattgacaacccacatgccacaattgcccaactcaagtcccaaatcgaatcccaacttcgagttccagttcaatcgcaaaccctatcttccaatcagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggacaaccctcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagcccgccggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcactgcgaactcgtttccttcgatcgtgatgccgccaatgcctttcaacattatgtcaatgaaacactcgcctttgctgtcaaaaggggtggttttatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25965" stop="27102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26265" g_stop="26802" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E272501" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26265" e_stop="26802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAACTTCCATACAGATTCACCTGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTA</genome_strand>
        <mrna_strand>CCCAACTTCCATACAGATTCACCTGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553577" ref_strand="+" ref_description="SGN-E553577 [cTSC-1-I6]">
      <seq>ccaacttccatacagattcacctgcactaaacatatcaatcaccataggaatacaaccaagatgatgatcagaatcagaagcagagatgggttagagcgagtcacaattgacaacccacatgccacaattgcccaactcaagtcccaaatcgaatcccaacttcgagttccagttcaatcgcaaaccctatcttccaatcagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggacaaccctcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagcccgccggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcactgcgaactcgtttccttcgatcgtgatgccgccaatgcctttcaacattatgtcaatgaaacactcgcctttgctgtcaaaaggggtggttttatgtatggtacagtatcccctgaaggcaaagtggaagtccattttatttatgagccgccccagcaagggaccgaggaaaatttgttgcttctacgcgatcctgatgaggagaaattggtggatgctatagctattggattagggatgaggaaagtagggtttatatttactcagacaattagtcaggataaaaaggattacactatgtcaactgcagaggtcttacaggcagctgagttacattcggagggtgatttgaaggaatgggtgaccgctatagtgaaacttgaggtgaatgacgatggcgctgccgatgtacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25966" stop="27419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26266" g_stop="27119" g_length="854"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="854" r_length="854" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E553577" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26266" e_stop="27119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTTCCATACAGATTCACCTGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATT</genome_strand>
        <mrna_strand>CCAACTTCCATACAGATTCACCTGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAACTTGAGGTGAATGACGATGGCGCTGCCGATGTACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315705" ref_strand="+" ref_description="SGN-E315705 [cTOA-26-G9]">
      <seq>caacttccatacagattcacctgcactaaacatatcaatcaccataggaatacaaccaagatgatgatcagaatcagaagcagagatgggttagagcgagtcacaattgacaacccacatgccacaattgcccaactcaagtcccaaatcgaatcccaacttcgagttccagttcaatcgcaaaccctatcttccaatcagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggacaaccctcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagcccgccggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcactgcgaactcgtttccttcgatcgtgatgccgccaatgcctttcaacattatgtcaatgaaacactcgcctttgctgtcaaaaggggtggttttatgtatggtacagtatcccctgaaggcaaagtggaagtccattttatttatgagccgccccagcaagggaccganggaaatttgttgcttctacgcgatcctgatgaggagaaatggtggatgctatagctattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25967" stop="27235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26267" g_stop="26935" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="668" r_length="668" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E315705" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26267" e_stop="26935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTCCATACAGATTCACCTGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGA</genome_strand>
        <mrna_strand>CAACTTCCATACAGATTCACCTGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGANGGAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAA-TGGTGGATGCTATAGCTATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315807" ref_strand="+" ref_description="SGN-E315807 [cTOA-26-F24]">
      <seq>caacttccatacagattcacctgcactaaacatatcaatcaccataggaatacaaccaagatgatgatcagaatcagaagcagagatgggttagagcgagtcacaattgacaacccacatgccacaattgcccaactcaagtcccaaatcgaatcccaacttcgagttccagttcaatcgcaaaccctatcttccaatcagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggacaaccctcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagcccgccggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcactgcgaactcgtttccttcgatcgtgatgccgccaatgcctttcaacattatgtcaatgaaacactcgcctttgctgntcaaaggggtggttntatgtatggtacagtatcccctggaagcaaagtggaagtccattttatttatgagccgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25967" stop="27157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26267" g_stop="26857" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E315807" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26267" e_stop="26857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTCCATACAGATTCACCTGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCC</genome_strand>
        <mrna_strand>CAACTTCCATACAGATTCACCTGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGNTCAAAGGGGTGGTTNTATGTATGGTACAGTATCCCCTGGAAGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745291" ref_strand="+" ref_description="SGN-E745291 [GI|47105787]">
      <seq>ggcactaaacatatcaatcaccataggaatacaaccaagatgatgatcagaatcagaagcagagatgggttagagcgagtcacaattgacaacccacatgccacaattgcccaactcaagtcccaaatcgaatcccaacttcgagttccagttcaatcgcaaaccctatcttccaatcagaaccttttgctcgctaaaaccccagatgattggtctcgcttcacggatatggacaaccctcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagcccgccggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcactgcgaactcgtttccttcgatcgtgatgccgccaatgcctttcaacattatgtcaatgaaacactcgcctttgctgtcaaaaggggtggttttatgtatggtacagtatcccctgaaggcaaagtggaagtccattttatttatgagccgccccagcaagggaccgaggaaaatttgttgcttctacgcgatcctgatgaggagaaattggtggatgctatagctattggattagggatgaggaaagtagggtttatatttactcagacaattagtcaggataaaaaggattacactatgtcaactgcagaggtcttacaggcagctgagttacattcggagggtgatttgaaggaatgggtgaccgctatagtgaagcttgaggtgaatgacgatggcgctgccgatgtacattttgaggcttttcagatgagtgatatgtgtgtgagattgttcaaggaaggctggtttgagacggatgttaaggatgagattgatccaaagctttccaagatgaagaaagatgtggtggtaggagtcaaggacacaagagaagttgataacgacttcttcttggttgttgtcaagattgcgggtcaccagggtccactttcttcatcatttcccattgaaaacaggattattccagtgagcatgaatgcattgaaagatcatttcaatcgaacaaagagtctttcttttgtgaagcgaatctcagatttccatctgctactgttgctggcgaaatttctggacattaatgcagatgttcctgcattggcagaatgtgtgcttacacagtcagctgtcccagaaggttacaagctccttatagaatcgatggctagtgcctcttaagcagcatcgcagacatcaggtaccagtgatgacattctcttgagtcgttacatgtgttgcagtgcagaaatcctcttaatgttatatttaccaccaatgagctgtttggatacttttgttaaattatatttggtttaatataattggttgaagttaaattcttcatatgttatggatgtgagggtatgaagatgtttattgcgcatgtcttttattgtatcgtcgtatcataaatttataattctaatgaaaagttgcagtgttttgacaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25989" stop="115101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26288" g_stop="27307" g_length="1020"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1020" r_length="1020" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27308" i_stop="29635" i_length="2328">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29636" g_stop="30178" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1021" r_stop="1563" r_length="543" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E745291" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26288" e_stop="27307"/>
          <exon e_start="29636" e_stop="30178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCGGATCACCAGGTGCGTTGGATTTATTGCATAGCTTTTTCTTTGAATCCTTTTTGTGTGCTCCATTAGTTGCTAGATGAATTACATTTGTTTGCTTTCCTTAAATTGCATAAAGTGAGTAACTTTATGATCATACTATGAGGAGAAAAATGAAGGCAGTGAGAAAAAGAACTGAACAGAAGAAATACTACACTATTGGTAAGAATTGGCGGTAGAACATCTAAGTATTGATTAAAAGATGCCTTTTTTAATTGTCTTTGGTTGGAACTGTTGAGAATAGAGAAACCTTACTACGGCATTAAAACACATGCTTAATTTAAGTAGCTGTGTGTTTTATGTAGTTTTAGCGAATCGGGTGTTGGTCAAAGCCCCCAAGTAGACATTTGTGTTGCCATATACTTCATCCTACAATTTGAACCTGTTAGGCGGTGATGATAGAACCTAATACTCTATGGTTTCGTGTGTAGTTTGAGAACATCATAAGAACTAGGCAGATCAGAAGGACGCTGAGTCTCAAGTGACTTAATCACTTTTCTCATCTTTTAGATCATCTAACTCATCCTTTCTGATTCGTAACCTTTTTGAAGATTTTTGGGTAATGTAGTTTGCCCCCCCCCCCCCCCTCAGTAGGTGATTTAGCATGTTTCATCATATATTTTTCTCTGATTTGCTTTCAGCTTGTCATCATTCTGTTAGCTGCATTAGTTAGCCCGGTTGGAGAATTCTGCTTTGTTTTCTTTTTTCCACTGTCTTCGCTTCACATGAAGCATGTTTCTGCAGACATGAACTCATTTATCTATGCTTATTTTTGTAATGTCAAAAGAATATTTCTAGGGATAGGTTTAAGTGTGAAATTAGGGAACTTTACCCTATGGTCATTGGACTGTTCAACGTTTAGGCTTGAGCATGATTGACCTGGAAAATTACCATGGAACAATAGCATTAAATCTTTCCATTGAGGAGTTATTCTTCATTCTTCTTCATTCAGTTTTCATTCACTAATTATATCCCCTCTCGCTTGATGTCAATCATGTGATAAATAAATTGGTTGAGGTATTGATGTCACCCATAGCGTGGGTGATGGAGTACAGTAGTGTGCTAGCTGTTGTTGCTATTGACTGTGGTTCTAAAATCTAACCGGTTGGGATATACTTTCAAGTGAGAGGTCTTCGTAAAATTACTTTAAGTGTCTTGCCATAAGACTTTGGACAGAGATTACAATATGCTTATACTCCATTTAACTTGACATGAACTTAAAGAAAAAGGAAGACATTTGAAATTTGTAGTCTAAATTAAAACTGGATATTTGTGTAGCTATTAATCAATTTGCTAAGGGCAAAGGGGGGGGGGGGGGGGGATTTTAATAAATTATCTTTATTATTATAGAAATATTACATTCCTTTTAGGATGGACTAAAAAGGAAAGTGGTACCACATTAATTGGGACAGAGGGAGTAGTACACTTGCTTTAAGGTGTGGTAGTATGTGCTCAACATGAAACTTGCATATTTTGATGTATTCCAAACTGTAATTCAAAATATTGCAAATTCTTCCTCTGTTTGTTCAGATGGCCTCTTGTTAATGTTGCATCAATTGTGGACTTTAGTGGAGTTTGAGTTTGTTAATGTTGCATCAATCGTTGACTTCAGTGGAGTTTGAGTGTCTGAGTGATCCTCAGTTTCTTTAAGGATATACTGAGAAAAATAGTCACTTTGCTTTTATCACCTGACATAATTGATGAACTGTGATAAGGTTTAGTTAGTGAGAGAAAGAATATGCAACCTAATTTGAATCAAATCATTTAAGAATCATGTAATAGCAGTCTCTGCACTTGGACCAACCTCAAATCAATCACTGTGCTGGGTGATGTTCCTTTTGTTTCTGTTTTCTGTCTTGAATCCAAAATAATTTTGAAAGAGTTTTCTAGCATGTGACATCCAATGTCGACTAGATTTGGAATAGGGCAGCTTTACCAGTTTTCAAAGTCCAGGACTTGGTGGAAGTTTTCAGTTTTGATATATATATATTAATGTAAAACTGGAGCTGGAAGAGATGCATAAAGGCTTAGGAATAGGTTCCTGCCTAGTGGTTTTGGAATAGATCAAACCCTGCAGAATGTCCTTGACAGTTTCATAAAGATACCTGTTATTTTATCATTTTTCTTTTCCTTTCCTTTTTGATATAAATTTGGCACATATGTGCGTTGTATCAATTAGAAATTGTTGGATGGATGCTAAGAGGTTCCTTCAACCCCTTTCTCCCTGTCTTGTGTCCTTTGCTTTCATACTGGTGATATTTATTTGAAGCACTTGGTTCTTATTTGGTCTCATCTCATGTGCAGGGTCCACTTTCTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTCTTTTGTGAAGCGAATCTCAGATTTCCATCTGCTACTGTTGCTGGCGAAATTTCTGGACATTAATGCAGATGTTCCTGCATTGGCAGAATGTGTGCTTACACAGTCAGCTGTCCCAGAAGGTTACAAGCTCCTTATAGAATCGATGGCTAGTGCCTCTTAAGCAGCATCGCAGACATCAGGTACCAGTGATGACATTCTCTTGAGTCGTTACATGTGTTGCAGTGCAGAAATCCTCTTAATGTTATATTTACCACCAATGAGCTGTTTGGATACTTTTGTTAAATTATATTTGGTTTAATATAATTGGTTGAAGTTAAATTCTTCATATGTTATGGATGTGAGGGTATGAAGATGTTTATTGCGCATGTCTTTTATTGTATCGTCGTATCATAAATTTATAATTCTAATGAGAAGTTGCAGTGTTTTGAAGCTCGATTTAACAAAATAT</genome_strand>
        <mrna_strand>GGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACGGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCGGGTCACCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCACTTTCTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTCTTTTGTGAAGCGAATCTCAGATTTCCATCTGCTACTGTTGCTGGCGAAATTTCTGGACATTAATGCAGATGTTCCTGCATTGGCAGAATGTGTGCTTACACAGTCAGCTGTCCCAGAAGGTTACAAGCTCCTTATAGAATCGATGGCTAGTGCCTCTTAAGCAGCATCGCAGACATCAGGTACCAGTGATGACATTCTCTTGAGTCGTTACATGTGTTGCAGTGCAGAAATCCTCTTAATGTTATATTTACCACCAATGAGCTGTTTGGATACTTTTGTTAAATTATATTTGGTTTAATATAATTGGTTGAAGTTAAATTCTTCATATGTTATGGATGTGAGGGTATGAAGATGTTTATTGCGCATGTCTTTTATTGTATCGTCGTATCATAAATTTATAATTCTAATGAAAAGTTGCAGTGTTTTGACAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392369" ref_strand="+" ref_description="SGN-E392369 [TUS-35-J4]">
      <seq>aacatatcaatcaccataggaatacaaccaagatgatgatcagaatcagaagcagagatgggttagagcgagtcacaattgacaacccacatgccacaattgcccaactcaagtcccaaatcgaatcccaacttcgagttccagttcaatcgcaaaccctatcttccaatcagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggacaaccctcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagcccgccggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcactgcgaactcgtttccttcgatcgtgatgccgccaatgcctttcaacattatgtcaatgaaacactcgcctttgctgtcaaaaggggtggttttatgtatggtacagtatcccctgaaggcaaagtggaagtccattttatttatgagccgccccagcaagggaccgaggaaaatttgttgcttctacgcgatcctgatgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25995" stop="27207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26295" g_stop="26907" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E392369" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26295" e_stop="26907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGA</genome_strand>
        <mrna_strand>AACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201107" ref_strand="+" ref_description="SGN-E201107 [cLEC-10-E4]">
      <seq>acatatcaatcaccataggaatacaaccaagatgatgatcagaatcagaagcagagatgggttagagcgagtcacaattgacaacccacatgccacaattgcccaactcaagtcccaaatcgaatcccaacttcgagttccagttcaatcgcaaaccctatcttccaatcagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggacaaccctcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagcccgccggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcactgcgaactcgtttccttcgatcgtgatgccgccaatgcctttcaacattatgtcaatgaaacactcgcctttgctgtcaaaaggggtggttttatgtatggtacagtatcccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25996" stop="27119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26296" g_stop="26819" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E201107" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26296" e_stop="26819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTG</genome_strand>
        <mrna_strand>ACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206388" ref_strand="+" ref_description="SGN-E206388 [cLEC-23-D16]">
      <seq>acatatcaatcaccataggaatacaaccaagatgatgatcagaatcagaagcagagatgggttagagcgagtcacaattgacaacccacatgccacaattgcccaactcaagtcccaaatcgaatcccaacttcgagttccagttcaatcgcaaaccctatcttccaatcagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggacaaccctcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagcccgccggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25996" stop="27005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26296" g_stop="26705" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E206388" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26296" e_stop="26705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACT</genome_strand>
        <mrna_strand>ACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539373" ref_strand="+" ref_description="SGN-E539373 [TUS-59-B14]">
      <seq>tcgaatcccaacttcgagttccagttcaatcgcaaaccctatcttccaatcagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggacaaccctcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagccgccccagcaagggaccgaggaaaatttgttgcttctacgcgatcctgatgaggagaaattggtggatgctatagctattggattagggatgaggaaagtagggtttatatttactcagacaattagtcaggataaaaaggattacactatgtcaactgcagaggtcttacaggcagctgagttacattcggagggtgatttgaaggaatgggtgaccgctatagtgaagcttgaggtgaatgacgatggcgctgccgatgtacattttgaggcttttcagatgagtgatatgtgtgtgagattgttcaaggaaggctggtttgagacggatgttaaggatgagattgatccaaagctttccaagatgaagaaagatgtggtggtaggagtcaaggacacaagagaagttgataacgacttcttcttggttgttgtcaagattgcggatcaccagggtccactttcttcatcatttcccattgaaaacaggattattccagtgagcatgaatgcattgaaagatcatttcaatcgaacaaagagtctttcttttgtgaagcgaatctcagatttcatctgctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26115" stop="30066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26415" g_stop="26620" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26621" i_stop="26851" i_length="231">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26852" g_stop="27307" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="662" r_length="456" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27308" i_stop="29635" i_length="2328">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29636" g_stop="29766" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="792" r_length="130" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E539373" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26415" e_stop="26620"/>
          <exon e_start="26852" e_stop="27307"/>
          <exon e_start="29636" e_stop="29766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCGGATCACCAGGTGCGTTGGATTTATTGCATAGCTTTTTCTTTGAATCCTTTTTGTGTGCTCCATTAGTTGCTAGATGAATTACATTTGTTTGCTTTCCTTAAATTGCATAAAGTGAGTAACTTTATGATCATACTATGAGGAGAAAAATGAAGGCAGTGAGAAAAAGAACTGAACAGAAGAAATACTACACTATTGGTAAGAATTGGCGGTAGAACATCTAAGTATTGATTAAAAGATGCCTTTTTTAATTGTCTTTGGTTGGAACTGTTGAGAATAGAGAAACCTTACTACGGCATTAAAACACATGCTTAATTTAAGTAGCTGTGTGTTTTATGTAGTTTTAGCGAATCGGGTGTTGGTCAAAGCCCCCAAGTAGACATTTGTGTTGCCATATACTTCATCCTACAATTTGAACCTGTTAGGCGGTGATGATAGAACCTAATACTCTATGGTTTCGTGTGTAGTTTGAGAACATCATAAGAACTAGGCAGATCAGAAGGACGCTGAGTCTCAAGTGACTTAATCACTTTTCTCATCTTTTAGATCATCTAACTCATCCTTTCTGATTCGTAACCTTTTTGAAGATTTTTGGGTAATGTAGTTTGCCCCCCCCCCCCCCCTCAGTAGGTGATTTAGCATGTTTCATCATATATTTTTCTCTGATTTGCTTTCAGCTTGTCATCATTCTGTTAGCTGCATTAGTTAGCCCGGTTGGAGAATTCTGCTTTGTTTTCTTTTTTCCACTGTCTTCGCTTCACATGAAGCATGTTTCTGCAGACATGAACTCATTTATCTATGCTTATTTTTGTAATGTCAAAAGAATATTTCTAGGGATAGGTTTAAGTGTGAAATTAGGGAACTTTACCCTATGGTCATTGGACTGTTCAACGTTTAGGCTTGAGCATGATTGACCTGGAAAATTACCATGGAACAATAGCATTAAATCTTTCCATTGAGGAGTTATTCTTCATTCTTCTTCATTCAGTTTTCATTCACTAATTATATCCCCTCTCGCTTGATGTCAATCATGTGATAAATAAATTGGTTGAGGTATTGATGTCACCCATAGCGTGGGTGATGGAGTACAGTAGTGTGCTAGCTGTTGTTGCTATTGACTGTGGTTCTAAAATCTAACCGGTTGGGATATACTTTCAAGTGAGAGGTCTTCGTAAAATTACTTTAAGTGTCTTGCCATAAGACTTTGGACAGAGATTACAATATGCTTATACTCCATTTAACTTGACATGAACTTAAAGAAAAAGGAAGACATTTGAAATTTGTAGTCTAAATTAAAACTGGATATTTGTGTAGCTATTAATCAATTTGCTAAGGGCAAAGGGGGGGGGGGGGGGGGATTTTAATAAATTATCTTTATTATTATAGAAATATTACATTCCTTTTAGGATGGACTAAAAAGGAAAGTGGTACCACATTAATTGGGACAGAGGGAGTAGTACACTTGCTTTAAGGTGTGGTAGTATGTGCTCAACATGAAACTTGCATATTTTGATGTATTCCAAACTGTAATTCAAAATATTGCAAATTCTTCCTCTGTTTGTTCAGATGGCCTCTTGTTAATGTTGCATCAATTGTGGACTTTAGTGGAGTTTGAGTTTGTTAATGTTGCATCAATCGTTGACTTCAGTGGAGTTTGAGTGTCTGAGTGATCCTCAGTTTCTTTAAGGATATACTGAGAAAAATAGTCACTTTGCTTTTATCACCTGACATAATTGATGAACTGTGATAAGGTTTAGTTAGTGAGAGAAAGAATATGCAACCTAATTTGAATCAAATCATTTAAGAATCATGTAATAGCAGTCTCTGCACTTGGACCAACCTCAAATCAATCACTGTGCTGGGTGATGTTCCTTTTGTTTCTGTTTTCTGTCTTGAATCCAAAATAATTTTGAAAGAGTTTTCTAGCATGTGACATCCAATGTCGACTAGATTTGGAATAGGGCAGCTTTACCAGTTTTCAAAGTCCAGGACTTGGTGGAAGTTTTCAGTTTTGATATATATATATTAATGTAAAACTGGAGCTGGAAGAGATGCATAAAGGCTTAGGAATAGGTTCCTGCCTAGTGGTTTTGGAATAGATCAAACCCTGCAGAATGTCCTTGACAGTTTCATAAAGATACCTGTTATTTTATCATTTTTCTTTTCCTTTCCTTTTTGATATAAATTTGGCACATATGTGCGTTGTATCAATTAGAAATTGTTGGATGGATGCTAAGAGGTTCCTTCAACCCCTTTCTCCCTGTCTTGTGTCCTTTGCTTTCATACTGGTGATATTTATTTGAAGCACTTGGTTCTTATTTGGTCTCATCTCATGTGCAGGGTCCACTTTCTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTCTTTTGTGAAGCGAATCTCAGATTTCCATCTGCTACT</genome_strand>
        <mrna_strand>TCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAG.......................................................................................................................................................................................................................................CCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCGGATCACCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCACTTTCTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTCTTTTGTGAAGCGAATCTCAGATTT-CATCTGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284336" ref_strand="-" ref_description="SGN-E284336 [cLER-16-A9]">
      <seq>catcggcagcgccatcgtcattcacctcaagcttcactatagcggtcacccattccttcaaatcaccctccgaatgtaactcagctgcctgtaagacctctgcagttgacatagtgtaatcctttttatcctgactaattgtctgagtaaatataaaccctactttcctcatccctaatccaatagctatagcatccaccaatttctcctcatcaggatcgcgtagaagcaacaaattttcctcggtcccttgctggggcggctgtacggtgggaccgggaattgtgcgctcaccctggtaagcaagataaaggatagacccgtgagtaagattgaaagaggagatgggtgtatgagggttgtccatatcagtgaagcgagaccaatcatctggggttttagcgagcaaaaggttctgattggaagatagggtttgcgattgaactggaactcgaagttgggattcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27413" stop="26116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27113" g_stop="26853" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26852" i_stop="26622" i_length="231">
            <donor d_prob="0.330" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26621" g_stop="26416" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="467" r_length="206" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E284336" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284336" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="27113" e_stop="26853"/>
          <exon e_start="26621" e_stop="26416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGGCAGCGCCATCGTCATTCACCTCAAGCTTCACTATAGCGGTCACCCATTCCTTCAAATCACCCTCCGAATGTAACTCAGCTGCCTGTAAGACCTCTGCAGTTGACATAGTGTAATCCTTTTTATCCTGACTAATTGTCTGAGTAAATATAAACCCTACTTTCCTCATCCCTAATCCAATAGCTATAGCATCCACCAATTTCTCCTCATCAGGATCGCGTAGAAGCAACAAATTTTCCTCGGTCCCTTGCTGGGGCGGCTCATAAATAAAATGGACTTCCACTTTGCCTTCAGGGGATACTGTACCATACATAAAACCACCCCTTTTGACAGCAAAGGCGAGTGTTTCATTGACATAATGTTGAAAGGCATTGGCGGCATCACGATCGAAGGAAACGAGTTCGCAGTGAGGGTTCTCTTGTCTAGTAACTCGCATTTGTTTAGCAATTAGGTCGTCCATGGTCATCTTTCTACCGAATGAACCGGCGGGCTGTACGGTGGGACCGGGAATTGTGCGCTCACCCTGGTAAGCAAGATAAAGGATAGAACCGTGAGTAAGATTGAAAGAGGAGATGGGTGTATGAGGGTTGTCCATATCAGTGAAGCGAGACCAATCATCTGGGGTTTTAGCGAGCAAAAGGTTCTGATTGGAAGATAGGGTTTGCGATTGAACTGGAACTCGAAGTTGGGATTCG</genome_strand>
        <mrna_strand>CATCGGCAGCGCCATCGTCATTCACCTCAAGCTTCACTATAGCGGTCACCCATTCCTTCAAATCACCCTCCGAATGTAACTCAGCTGCCTGTAAGACCTCTGCAGTTGACATAGTGTAATCCTTTTTATCCTGACTAATTGTCTGAGTAAATATAAACCCTACTTTCCTCATCCCTAATCCAATAGCTATAGCATCCACCAATTTCTCCTCATCAGGATCGCGTAGAAGCAACAAATTTTCCTCGGTCCCTTGCTGGGGCG.......................................................................................................................................................................................................................................GCTGTACGGTGGGACCGGGAATTGTGCGCTCACCCTGGTAAGCAAGATAAAGGATAGACCCGTGAGTAAGATTGAAAGAGGAGATGGGTGTATGAGGGTTGTCCATATCAGTGAAGCGAGACCAATCATCTGGGGTTTTAGCGAGCAAAAGGTTCTGATTGGAAGATAGGGTTTGCGATTGAACTGGAACTCGAAGTTGGGATTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446117" ref_strand="+" ref_description="SGN-E446117 [cSTA-20-C21]">
      <seq>gttcaatctcaaaccctatctgcaaatcagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggccaaccctcatacacccatctcctctttgaaccttactcacggttccatgctttatctcgcttacgagggtgaacgcaccattgccggtccggccgtccagcccgccggttcattcggtagaaagatgaccatggacgacctaattgccaaacaaatgcgagttacaagacaagagaaccctcactgcgagctggtttccttcgatcgtgatgccgccaatgcctttcaacattatgtcaatgaaacactcgcctttgctgtcaaaaggggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26138" stop="27092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26438" g_stop="26792" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E446117" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26438" e_stop="26792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTG</genome_strand>
        <mrna_strand>GTTCAATCTCAAACCCTATCTGCAAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGCCAACCCTCATACACCCATCTCCTCTTTGAACCTTACTCACGGTTCCATGCTTTATCTCGCTTACGAGGGTGAACGCACCATTGCCGGTCCGGCCGTCCAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCCAAACAAATGCGAGTTACAAGACAAGAGAACCCTCACTGCGAGCTGGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263248" ref_strand="+" ref_description="SGN-E263248 [cLEG-62-J20]">
      <seq>cagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggacaaccctcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagcccgccggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcactgcgaactcgtttccttcgatcgtgatgccgccaatgcctttcaacattatgtcaatgaaacactcgcctttgctgtcaaaaggggtggttttatgtatggtacagtatcccctgaaggcaaagtggaagtccattttatttatgagccgccccagcaagggaccgaggaaaatttgttgcttctacgcgatcctgatgaggagaaattggtggatgctatagctattggattagggatgaggaaagtagggtttatatttactcagacaattagtcaggataaaaaggattacactatgtcaactgcagaggtcttacaggcagctgagttacattcggagggtgatttgaaggaatgggtgaccgctatagtgaagcttgaggtgaatgacgatggcgctgccgatgtacattttgaggcttttcagatgagtgatatgtgtgtgagattgttcaaggaaggctggtttgagacngatgttaagggatgagattgatccaaagctttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26165" stop="27514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26465" g_stop="27214" g_length="750"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="751" r_length="751" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E263248" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26465" e_stop="27214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAA-GGATGAGATTGATCCAAAGCTTTCC</genome_strand>
        <mrna_strand>CAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACNGATGTTAAGGGATGAGATTGATCCAAAGCTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375727" ref_strand="+" ref_description="SGN-E375727 [TUS-35-I13]">
      <seq>cagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggacaaccctcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagcccgccggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcactgcgaactcgtttccttcgatcgtgatgccgccaatgcctttcaacattatgtcaatgaaacactcgcctttgctgtcaaaaggggtggttttatgtatggtacagtatcccctgaaggcaaagtggaagtccattttatttatgagccgccccagcaagggaccgaggaaaatttgttgcttctacgcgatcctgatgaggagaaattggtggatgctatagctattggattagggatgaggaaagtagggtttatatttactcagacaattagtcaggataaaaaggattacactatgtcaactgcagaggtcttacaggcagctgagttacattcggagggtgatttgaaggaatgggtgaccgctatagtgaagcttgaggtgaatgacgatggcgctgccgatgtacattttgaggcttttcagatgagtgatatgtgtgtgagattgttcaaggaaggctggtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26165" stop="27476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26465" g_stop="27176" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E375727" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26465" e_stop="27176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTG</genome_strand>
        <mrna_strand>CAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259788" ref_strand="+" ref_description="SGN-E259788 [cLEG-51-I21]">
      <seq>cagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggacaaccctcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagcccgccggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcactgcgaactcgtttccttcgatcgtgatgccgccaatgcctttcaacattatgtcaatgaaacactcgcctttgctgtcaaaaggggtggttttatgtatggtacagtatcccctgaaggcaaagtggaagtccattttatttatgagccgccccagcaagggaccgaggaaaatttgttgcttctacgcgatcctgatgaggagaaattggtggatgctatagctattggattanggatgaggaaagtacggtttatatttactcagacaattagtcaggataaaaaggattacactatgtcaactgcagaggtcttacaggcagctgagttacattcggagggtgatttgaaggaatgggtgaccgctatagtgaagcttgaagtgaatgacgatggcgctgccgatgtacattttgaagcttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26165" stop="27431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26465" g_stop="27131" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E259788" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26465" e_stop="27131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTC</genome_strand>
        <mrna_strand>CAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTANGGATGAGGAAAGTACGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAAGTGAATGACGATGGCGCTGCCGATGTACATTTTGAAGCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255597" ref_strand="+" ref_description="SGN-E255597 [cLEG-36-I22]">
      <seq>cagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggacaaccgtcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagcccgccggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcactgcgaactcgtttccttcgatcgtgatgccgccaatgcctttcaacattatgtcaatgaaacactcgcctttgctgtcaaaaggggtggttttatgtatggtacagtatcccctgaaggcaaagtggaagtccattttatttatgagccgccccagcaagggaccgaggaaaatttgttgcttctacgcgatcctgatgaggagaaattggtggatgctatagctattggattagggatgaggaaagtagggtttatatttactcagacaattagtcaggataaaaaggattacactatgtcaactgcagaggtcttacaggcagctgagttacattcggagggtgatttgaaggaatgggtgaccgctatagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26165" stop="27380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26465" g_stop="27080" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E255597" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26465" e_stop="27080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGA</genome_strand>
        <mrna_strand>CAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCGTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375731" ref_strand="+" ref_description="SGN-E375731 [TUS-35-I19]">
      <seq>cagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggacaaccctcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagcccgccggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcactgcgaactcgtttccttcgatcgtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26165" stop="27032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26465" g_stop="26732" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E375731" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26465" e_stop="26732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATG</genome_strand>
        <mrna_strand>CAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312788" ref_strand="+" ref_description="SGN-E312788 [cTOA-8-H22]">
      <seq>caattcccggtcccaccgtacagcccgccggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcactgcgaactcgtttccttcgatcgtgatgccgccaatgcctttcaacattatgtcaatgaaacactcgcctttgctgtcaaaaggggtggttttatgtatggtacagtatcccctgaaggcaaagtggaagtccattttatttatgagccgccccagcaagggaccgaggaaaatttgttgcttctacgcgatcctgatgaggagaaattggtggatgctatagctattggattagggatgaggaaagtagggtttatatttactcagacaattagtcaggataaaaaggattacactatgtcaactgcagaggtcttacaggcagctgagttacattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26298" stop="27342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26598" g_stop="27042" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E312788" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26598" e_stop="27042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTC</genome_strand>
        <mrna_strand>CAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573424" ref_strand="+" ref_description="SGN-E573424 [32733]">
      <seq>ttacaagacaagagaaccctcactgcgagctggtttccttcgatcgtgatgccgccaatgcctttcaacattatgtcaatgaaacactcgcctttgctgtcaaaaggggtggttttatgtatggtacggtatcgcctgagggcaaagtggaagtcgattttatttatgagccgccccagcaagggaccgaggaaaatttgttacttttacgcgatcctgatgaggagaaattggtggatgctatagctattggattagggatgaggaaagtagggtttatatttactcagacaattagtcaggataagaaggattacacaatgtcaactgcagaagtcttacaggcagctgagttacattcggagggtgatttgaaggagtgggtgaccgctatagtgaagcttgaggtgaatgaggatggcgctgccgatgtacattttgaggcttttcagatgagtgatatgtgtgttagattgttcaaggaagggtggtttgagacagatgttaaggatgagattgatccaaagctttctaagatgaagaaagatgtggtggtaggagtcaaggacacaagagaagttgataacgacttcttcttggttgttgtcaagattgctgatcaccagggtccactttcttcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26382" stop="29953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26682" g_stop="27307" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27308" i_stop="29635" i_length="2328">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29636" g_stop="29653" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="644" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E573424" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26682" e_stop="27307"/>
          <exon e_start="29636" e_stop="29653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCGGATCACCAGGTGCGTTGGATTTATTGCATAGCTTTTTCTTTGAATCCTTTTTGTGTGCTCCATTAGTTGCTAGATGAATTACATTTGTTTGCTTTCCTTAAATTGCATAAAGTGAGTAACTTTATGATCATACTATGAGGAGAAAAATGAAGGCAGTGAGAAAAAGAACTGAACAGAAGAAATACTACACTATTGGTAAGAATTGGCGGTAGAACATCTAAGTATTGATTAAAAGATGCCTTTTTTAATTGTCTTTGGTTGGAACTGTTGAGAATAGAGAAACCTTACTACGGCATTAAAACACATGCTTAATTTAAGTAGCTGTGTGTTTTATGTAGTTTTAGCGAATCGGGTGTTGGTCAAAGCCCCCAAGTAGACATTTGTGTTGCCATATACTTCATCCTACAATTTGAACCTGTTAGGCGGTGATGATAGAACCTAATACTCTATGGTTTCGTGTGTAGTTTGAGAACATCATAAGAACTAGGCAGATCAGAAGGACGCTGAGTCTCAAGTGACTTAATCACTTTTCTCATCTTTTAGATCATCTAACTCATCCTTTCTGATTCGTAACCTTTTTGAAGATTTTTGGGTAATGTAGTTTGCCCCCCCCCCCCCCCTCAGTAGGTGATTTAGCATGTTTCATCATATATTTTTCTCTGATTTGCTTTCAGCTTGTCATCATTCTGTTAGCTGCATTAGTTAGCCCGGTTGGAGAATTCTGCTTTGTTTTCTTTTTTCCACTGTCTTCGCTTCACATGAAGCATGTTTCTGCAGACATGAACTCATTTATCTATGCTTATTTTTGTAATGTCAAAAGAATATTTCTAGGGATAGGTTTAAGTGTGAAATTAGGGAACTTTACCCTATGGTCATTGGACTGTTCAACGTTTAGGCTTGAGCATGATTGACCTGGAAAATTACCATGGAACAATAGCATTAAATCTTTCCATTGAGGAGTTATTCTTCATTCTTCTTCATTCAGTTTTCATTCACTAATTATATCCCCTCTCGCTTGATGTCAATCATGTGATAAATAAATTGGTTGAGGTATTGATGTCACCCATAGCGTGGGTGATGGAGTACAGTAGTGTGCTAGCTGTTGTTGCTATTGACTGTGGTTCTAAAATCTAACCGGTTGGGATATACTTTCAAGTGAGAGGTCTTCGTAAAATTACTTTAAGTGTCTTGCCATAAGACTTTGGACAGAGATTACAATATGCTTATACTCCATTTAACTTGACATGAACTTAAAGAAAAAGGAAGACATTTGAAATTTGTAGTCTAAATTAAAACTGGATATTTGTGTAGCTATTAATCAATTTGCTAAGGGCAAAGGGGGGGGGGGGGGGGGATTTTAATAAATTATCTTTATTATTATAGAAATATTACATTCCTTTTAGGATGGACTAAAAAGGAAAGTGGTACCACATTAATTGGGACAGAGGGAGTAGTACACTTGCTTTAAGGTGTGGTAGTATGTGCTCAACATGAAACTTGCATATTTTGATGTATTCCAAACTGTAATTCAAAATATTGCAAATTCTTCCTCTGTTTGTTCAGATGGCCTCTTGTTAATGTTGCATCAATTGTGGACTTTAGTGGAGTTTGAGTTTGTTAATGTTGCATCAATCGTTGACTTCAGTGGAGTTTGAGTGTCTGAGTGATCCTCAGTTTCTTTAAGGATATACTGAGAAAAATAGTCACTTTGCTTTTATCACCTGACATAATTGATGAACTGTGATAAGGTTTAGTTAGTGAGAGAAAGAATATGCAACCTAATTTGAATCAAATCATTTAAGAATCATGTAATAGCAGTCTCTGCACTTGGACCAACCTCAAATCAATCACTGTGCTGGGTGATGTTCCTTTTGTTTCTGTTTTCTGTCTTGAATCCAAAATAATTTTGAAAGAGTTTTCTAGCATGTGACATCCAATGTCGACTAGATTTGGAATAGGGCAGCTTTACCAGTTTTCAAAGTCCAGGACTTGGTGGAAGTTTTCAGTTTTGATATATATATATTAATGTAAAACTGGAGCTGGAAGAGATGCATAAAGGCTTAGGAATAGGTTCCTGCCTAGTGGTTTTGGAATAGATCAAACCCTGCAGAATGTCCTTGACAGTTTCATAAAGATACCTGTTATTTTATCATTTTTCTTTTCCTTTCCTTTTTGATATAAATTTGGCACATATGTGCGTTGTATCAATTAGAAATTGTTGGATGGATGCTAAGAGGTTCCTTCAACCCCTTTCTCCCTGTCTTGTGTCCTTTGCTTTCATACTGGTGATATTTATTTGAAGCACTTGGTTCTTATTTGGTCTCATCTCATGTGCAGGGTCCACTTTCTTCATCA</genome_strand>
        <mrna_strand>TTACAAGACAAGAGAACCCTCACTGCGAGCTGGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACGGTATCGCCTGAGGGCAAAGTGGAAGTCGATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTACTTTTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAGAAGGATTACACAATGTCAACTGCAGAAGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAGTGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGAGGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTTAGATTGTTCAAGGAAGGGTGGTTTGAGACAGATGTTAAGGATGAGATTGATCCAAAGCTTTCTAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCTGATCACCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCACTTTCTTCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353859" ref_strand="+" ref_description="SGN-E353859 [cTOS-10-L12]">
      <seq>aggattacactatgtcaactgcagaggtcttacaggcagctgagttacattcggagggtgatttgaaggaatgggtgaccgctatagtgaagcttgaggtgaatgacgatggcgctgccgatgtacattttgaggcttttcagatgagtgatatgtgtgtgagattgttcaaggaaggctggtttgagacggatgttaaggatgagattgatccaaagctttccaagatgaagaaagatgtggtggtaggagtcaaggacacaagagaagttgataacgacttcttcttggttgttgtcaagattgcggatcaccagggtccactttcttcatcatttcccattgaaaacaggattattccagtgagcatgaatgcattgaaagatcatttcaatcgaacaaagagtctttcttttgtgaagcgaatctcagatttccatctgctactgttgctggcgaaatttctggacattaatgcagatgttcctgcattggcagaatgtgtgcttacacagtcagctgtcccagaatgttacaagctccttatagaatcgatggctagtgcctcttaagcagcatcgcagacatcaggtaccagtgatgacattctcttgagtcgttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26691" stop="30241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26991" g_stop="27307" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27308" i_stop="29635" i_length="2328">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29636" g_stop="29941" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="623" r_length="306" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E353859" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26991" e_stop="27307"/>
          <exon e_start="29636" e_stop="29941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCGGATCACCAGGTGCGTTGGATTTATTGCATAGCTTTTTCTTTGAATCCTTTTTGTGTGCTCCATTAGTTGCTAGATGAATTACATTTGTTTGCTTTCCTTAAATTGCATAAAGTGAGTAACTTTATGATCATACTATGAGGAGAAAAATGAAGGCAGTGAGAAAAAGAACTGAACAGAAGAAATACTACACTATTGGTAAGAATTGGCGGTAGAACATCTAAGTATTGATTAAAAGATGCCTTTTTTAATTGTCTTTGGTTGGAACTGTTGAGAATAGAGAAACCTTACTACGGCATTAAAACACATGCTTAATTTAAGTAGCTGTGTGTTTTATGTAGTTTTAGCGAATCGGGTGTTGGTCAAAGCCCCCAAGTAGACATTTGTGTTGCCATATACTTCATCCTACAATTTGAACCTGTTAGGCGGTGATGATAGAACCTAATACTCTATGGTTTCGTGTGTAGTTTGAGAACATCATAAGAACTAGGCAGATCAGAAGGACGCTGAGTCTCAAGTGACTTAATCACTTTTCTCATCTTTTAGATCATCTAACTCATCCTTTCTGATTCGTAACCTTTTTGAAGATTTTTGGGTAATGTAGTTTGCCCCCCCCCCCCCCCTCAGTAGGTGATTTAGCATGTTTCATCATATATTTTTCTCTGATTTGCTTTCAGCTTGTCATCATTCTGTTAGCTGCATTAGTTAGCCCGGTTGGAGAATTCTGCTTTGTTTTCTTTTTTCCACTGTCTTCGCTTCACATGAAGCATGTTTCTGCAGACATGAACTCATTTATCTATGCTTATTTTTGTAATGTCAAAAGAATATTTCTAGGGATAGGTTTAAGTGTGAAATTAGGGAACTTTACCCTATGGTCATTGGACTGTTCAACGTTTAGGCTTGAGCATGATTGACCTGGAAAATTACCATGGAACAATAGCATTAAATCTTTCCATTGAGGAGTTATTCTTCATTCTTCTTCATTCAGTTTTCATTCACTAATTATATCCCCTCTCGCTTGATGTCAATCATGTGATAAATAAATTGGTTGAGGTATTGATGTCACCCATAGCGTGGGTGATGGAGTACAGTAGTGTGCTAGCTGTTGTTGCTATTGACTGTGGTTCTAAAATCTAACCGGTTGGGATATACTTTCAAGTGAGAGGTCTTCGTAAAATTACTTTAAGTGTCTTGCCATAAGACTTTGGACAGAGATTACAATATGCTTATACTCCATTTAACTTGACATGAACTTAAAGAAAAAGGAAGACATTTGAAATTTGTAGTCTAAATTAAAACTGGATATTTGTGTAGCTATTAATCAATTTGCTAAGGGCAAAGGGGGGGGGGGGGGGGGATTTTAATAAATTATCTTTATTATTATAGAAATATTACATTCCTTTTAGGATGGACTAAAAAGGAAAGTGGTACCACATTAATTGGGACAGAGGGAGTAGTACACTTGCTTTAAGGTGTGGTAGTATGTGCTCAACATGAAACTTGCATATTTTGATGTATTCCAAACTGTAATTCAAAATATTGCAAATTCTTCCTCTGTTTGTTCAGATGGCCTCTTGTTAATGTTGCATCAATTGTGGACTTTAGTGGAGTTTGAGTTTGTTAATGTTGCATCAATCGTTGACTTCAGTGGAGTTTGAGTGTCTGAGTGATCCTCAGTTTCTTTAAGGATATACTGAGAAAAATAGTCACTTTGCTTTTATCACCTGACATAATTGATGAACTGTGATAAGGTTTAGTTAGTGAGAGAAAGAATATGCAACCTAATTTGAATCAAATCATTTAAGAATCATGTAATAGCAGTCTCTGCACTTGGACCAACCTCAAATCAATCACTGTGCTGGGTGATGTTCCTTTTGTTTCTGTTTTCTGTCTTGAATCCAAAATAATTTTGAAAGAGTTTTCTAGCATGTGACATCCAATGTCGACTAGATTTGGAATAGGGCAGCTTTACCAGTTTTCAAAGTCCAGGACTTGGTGGAAGTTTTCAGTTTTGATATATATATATTAATGTAAAACTGGAGCTGGAAGAGATGCATAAAGGCTTAGGAATAGGTTCCTGCCTAGTGGTTTTGGAATAGATCAAACCCTGCAGAATGTCCTTGACAGTTTCATAAAGATACCTGTTATTTTATCATTTTTCTTTTCCTTTCCTTTTTGATATAAATTTGGCACATATGTGCGTTGTATCAATTAGAAATTGTTGGATGGATGCTAAGAGGTTCCTTCAACCCCTTTCTCCCTGTCTTGTGTCCTTTGCTTTCATACTGGTGATATTTATTTGAAGCACTTGGTTCTTATTTGGTCTCATCTCATGTGCAGGGTCCACTTTCTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTCTTTTGTGAAGCGAATCTCAGATTTCCATCTGCTACTGTTGCTGGCGAAATTTCTGGACATTAATGCAGATGTTCCTGCATTGGCAGAATGTGTGCTTACACAGTCAGCTGTCCCAGAAGGTTACAAGCTCCTTATAGAATCGATGGCTAGTGCCTCTTAAGCAGCATCGCAGACATCAGGTACCAGTGATGACATTCTCTTGAGTCGTTAC</genome_strand>
        <mrna_strand>AGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCGGATCACCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCACTTTCTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTCTTTTGTGAAGCGAATCTCAGATTTCCATCTGCTACTGTTGCTGGCGAAATTTCTGGACATTAATGCAGATGTTCCTGCATTGGCAGAATGTGTGCTTACACAGTCAGCTGTCCCAGAATGTTACAAGCTCCTTATAGAATCGATGGCTAGTGCCTCTTAAGCAGCATCGCAGACATCAGGTACCAGTGATGACATTCTCTTGAGTCGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375726" ref_strand="+" ref_description="SGN-E375726 [TUS-35-I13](-)">
      <seq>ttgaaggaatgggtgaccgctatagtgaagcttgaggtgaatgacgatggcgctgccgatgtacattttgaggcttttcagatgagtgatatgtgtgtgagattgttcaaggaaggctggtttgagacggatgttaaggatgagattgatccaaagctttccaagatgaagaaagatgtggtggtaggagtcaaggacacaagagaagttgataacgacttttttttggttgttgtcaagattgcggatcaccagggtccacttttttcatcatttcccattgaaaacaggattattccagtgagcatgaatgcattgaaagatcatttcaatcgaacaaagagtcttttttttgtgaagcgaatttcagatttccatttgctactgttgctggcgaaatttttggacattaatgcagatgttcctgcattggcagaatgtgtgcttacacagtcagctgtcccagaaggttacaagctccttatagaatcgatgggtagtgccttttaagcagcatcgcagacatcaggtaccagtgatgacattttcttgagtcgttacatgtgttgcagtgcagaaatccttttaatgttatatttaccaccaatgagctgtttggatacttttgttaaattatatttggtttaatataattggttgaagttaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26753" stop="115102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27053" g_stop="27307" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27308" i_stop="29635" i_length="2328">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29636" g_stop="30047" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="667" r_length="412" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30048" i_stop="30558" i_length="511">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.625" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30559" g_stop="30580" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="689" r_length="22" r_score="0.545"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E375726" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27053" e_stop="27307"/>
          <exon e_start="29636" e_stop="30047"/>
          <exon e_start="30559" e_stop="30580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCGGATCACCAGGTGCGTTGGATTTATTGCATAGCTTTTTCTTTGAATCCTTTTTGTGTGCTCCATTAGTTGCTAGATGAATTACATTTGTTTGCTTTCCTTAAATTGCATAAAGTGAGTAACTTTATGATCATACTATGAGGAGAAAAATGAAGGCAGTGAGAAAAAGAACTGAACAGAAGAAATACTACACTATTGGTAAGAATTGGCGGTAGAACATCTAAGTATTGATTAAAAGATGCCTTTTTTAATTGTCTTTGGTTGGAACTGTTGAGAATAGAGAAACCTTACTACGGCATTAAAACACATGCTTAATTTAAGTAGCTGTGTGTTTTATGTAGTTTTAGCGAATCGGGTGTTGGTCAAAGCCCCCAAGTAGACATTTGTGTTGCCATATACTTCATCCTACAATTTGAACCTGTTAGGCGGTGATGATAGAACCTAATACTCTATGGTTTCGTGTGTAGTTTGAGAACATCATAAGAACTAGGCAGATCAGAAGGACGCTGAGTCTCAAGTGACTTAATCACTTTTCTCATCTTTTAGATCATCTAACTCATCCTTTCTGATTCGTAACCTTTTTGAAGATTTTTGGGTAATGTAGTTTGCCCCCCCCCCCCCCCTCAGTAGGTGATTTAGCATGTTTCATCATATATTTTTCTCTGATTTGCTTTCAGCTTGTCATCATTCTGTTAGCTGCATTAGTTAGCCCGGTTGGAGAATTCTGCTTTGTTTTCTTTTTTCCACTGTCTTCGCTTCACATGAAGCATGTTTCTGCAGACATGAACTCATTTATCTATGCTTATTTTTGTAATGTCAAAAGAATATTTCTAGGGATAGGTTTAAGTGTGAAATTAGGGAACTTTACCCTATGGTCATTGGACTGTTCAACGTTTAGGCTTGAGCATGATTGACCTGGAAAATTACCATGGAACAATAGCATTAAATCTTTCCATTGAGGAGTTATTCTTCATTCTTCTTCATTCAGTTTTCATTCACTAATTATATCCCCTCTCGCTTGATGTCAATCATGTGATAAATAAATTGGTTGAGGTATTGATGTCACCCATAGCGTGGGTGATGGAGTACAGTAGTGTGCTAGCTGTTGTTGCTATTGACTGTGGTTCTAAAATCTAACCGGTTGGGATATACTTTCAAGTGAGAGGTCTTCGTAAAATTACTTTAAGTGTCTTGCCATAAGACTTTGGACAGAGATTACAATATGCTTATACTCCATTTAACTTGACATGAACTTAAAGAAAAAGGAAGACATTTGAAATTTGTAGTCTAAATTAAAACTGGATATTTGTGTAGCTATTAATCAATTTGCTAAGGGCAAAGGGGGGGGGGGGGGGGGATTTTAATAAATTATCTTTATTATTATAGAAATATTACATTCCTTTTAGGATGGACTAAAAAGGAAAGTGGTACCACATTAATTGGGACAGAGGGAGTAGTACACTTGCTTTAAGGTGTGGTAGTATGTGCTCAACATGAAACTTGCATATTTTGATGTATTCCAAACTGTAATTCAAAATATTGCAAATTCTTCCTCTGTTTGTTCAGATGGCCTCTTGTTAATGTTGCATCAATTGTGGACTTTAGTGGAGTTTGAGTTTGTTAATGTTGCATCAATCGTTGACTTCAGTGGAGTTTGAGTGTCTGAGTGATCCTCAGTTTCTTTAAGGATATACTGAGAAAAATAGTCACTTTGCTTTTATCACCTGACATAATTGATGAACTGTGATAAGGTTTAGTTAGTGAGAGAAAGAATATGCAACCTAATTTGAATCAAATCATTTAAGAATCATGTAATAGCAGTCTCTGCACTTGGACCAACCTCAAATCAATCACTGTGCTGGGTGATGTTCCTTTTGTTTCTGTTTTCTGTCTTGAATCCAAAATAATTTTGAAAGAGTTTTCTAGCATGTGACATCCAATGTCGACTAGATTTGGAATAGGGCAGCTTTACCAGTTTTCAAAGTCCAGGACTTGGTGGAAGTTTTCAGTTTTGATATATATATATTAATGTAAAACTGGAGCTGGAAGAGATGCATAAAGGCTTAGGAATAGGTTCCTGCCTAGTGGTTTTGGAATAGATCAAACCCTGCAGAATGTCCTTGACAGTTTCATAAAGATACCTGTTATTTTATCATTTTTCTTTTCCTTTCCTTTTTGATATAAATTTGGCACATATGTGCGTTGTATCAATTAGAAATTGTTGGATGGATGCTAAGAGGTTCCTTCAACCCCTTTCTCCCTGTCTTGTGTCCTTTGCTTTCATACTGGTGATATTTATTTGAAGCACTTGGTTCTTATTTGGTCTCATCTCATGTGCAGGGTCCACTTTCTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTCTTTTGTGAAGCGAATCTCAGATTTCCATCTGCTACTGTTGCTGGCGAAATTTCTGGACATTAATGCAGATGTTCCTGCATTGGCAGAATGTGTGCTTACACAGTCAGCTGTCCCAGAAGGTTACAAGCTCCTTATAGAATCGATGGCTAGTGCCTCTTAAGCAGCATCGCAGACATCAGGTACCAGTGATGACATTCTCTTGAGTCGTTACATGTGTTGCAGTGCAGAAATCCTCTTAATGTTATATTTACCACCAATGAGCTGTTTGGATACTTTTGTTAAATTATATTTGGTTTAATATAATTGGTTGAAGTTAAATTCTTCATATGTTATGGATGTGAGGGTATGAAGATGTTTATTGCGCATGTCTTTTATTGTATCGTCGTATCATAAATTTATAATTCTAATGAGAAGTTGCAGTGTTTTGAAGCTCGATTTAACAAAATATTCTGTTAAAAGGCATTTCTATTGTCCACCCTTTGGGGGTGTCTCAAGAATGATAAATGCACACATGATTGTTCTTCTTAAACATGTAGAATAGAGTATTTGTTTGTTGTCTCTCTCTCCCGCAGTAATTGAAATTTGGATAGGAATAATCGATCGTTTGTTTGTGCAAAAAACAGATGAGTTATCTCATTCTGTAACAAGCATTGCATGTCATCTAGGGCTCCATCTGCAATGGTCATCATTTCTCATCAAAACACTACTACTCCATATGATTATTATATACATACAGAAGTGCAAATCTATGGAGATGAATTACGGACGTATGCCTTGTGGGAATCTATATTTGCCTCATTGCTAACTTTACTATGACGTGTCCGACAGATACCGTATGAAAAATCACAAA</genome_strand>
        <mrna_strand>TTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTTTTTTTGGTTGTTGTCAAGATTGCGGATCACCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCACTTTTTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTTTTTTGTGAAGCGAATTTCAGATTTCCATTTGCTACTGTTGCTGGCGAAATTTTTGGACATTAATGCAGATGTTCCTGCATTGGCAGAATGTGTGCTTACACAGTCAGCTGTCCCAGAAGGTTACAAGCTCCTTATAGAATCGATGGGTAGTGCCTTTTAAGCAGCATCGCAGACATCAGGTACCAGTGATGACATTTTCTTGAGTCGTTACATGTGTTGCAGTGCAGAAATCCTTTTAATGTTATATTTACCACCAATGAGCTGTTTGGATACTTTTGTTAAATTATATTTGGTTTAATATAATTGGTTGAAGTTAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375730" ref_strand="+" ref_description="SGN-E375730 [TUS-35-I19](-)">
      <seq>ggtgaatgacgatggcgctgccgatgtacattttgaggcttttcagatgagtgatatgtgtgtgagattgttcaaggaaggctggtttgagacggatgttaaggatgagattgatccaaagctttccaagatgaagaaagatgtggtggtaggagtcaaggacacaagagaagttgataacgacttctttttggttgttgtcaagattgcggatcaccagggtccacttttttcatcatttcccattgaaaacaggattattccagtgagcatgaatgcattgaaagatcatttcaatcgaacaaagagtcttttttttgtgaagcgaatttcagatttccatttgctactgttgctggcgaaatttttggacattaatgcagatgttcctgcattggcagaatgtgtgcttacacagtcagctgtcccagaaggttacaagctccttatagaatcgatggctagtgccttttaagcagcatcgcagacatcaggtaccagtgatgacattttcttgagtcgttacatgtgttgcagtgcagaaatccttttaatgttatatttaccaccaatgagctgtttggatacttttgttaaattatatttggtttaatataattggttgaagttaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26788" stop="115102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27088" g_stop="27307" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27308" i_stop="29635" i_length="2328">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29636" g_stop="30047" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="632" r_length="412" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30048" i_stop="30558" i_length="511">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.625" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30559" g_stop="30580" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="654" r_length="22" r_score="0.545"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E375730" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27088" e_stop="27307"/>
          <exon e_start="29636" e_stop="30047"/>
          <exon e_start="30559" e_stop="30580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCGGATCACCAGGTGCGTTGGATTTATTGCATAGCTTTTTCTTTGAATCCTTTTTGTGTGCTCCATTAGTTGCTAGATGAATTACATTTGTTTGCTTTCCTTAAATTGCATAAAGTGAGTAACTTTATGATCATACTATGAGGAGAAAAATGAAGGCAGTGAGAAAAAGAACTGAACAGAAGAAATACTACACTATTGGTAAGAATTGGCGGTAGAACATCTAAGTATTGATTAAAAGATGCCTTTTTTAATTGTCTTTGGTTGGAACTGTTGAGAATAGAGAAACCTTACTACGGCATTAAAACACATGCTTAATTTAAGTAGCTGTGTGTTTTATGTAGTTTTAGCGAATCGGGTGTTGGTCAAAGCCCCCAAGTAGACATTTGTGTTGCCATATACTTCATCCTACAATTTGAACCTGTTAGGCGGTGATGATAGAACCTAATACTCTATGGTTTCGTGTGTAGTTTGAGAACATCATAAGAACTAGGCAGATCAGAAGGACGCTGAGTCTCAAGTGACTTAATCACTTTTCTCATCTTTTAGATCATCTAACTCATCCTTTCTGATTCGTAACCTTTTTGAAGATTTTTGGGTAATGTAGTTTGCCCCCCCCCCCCCCCTCAGTAGGTGATTTAGCATGTTTCATCATATATTTTTCTCTGATTTGCTTTCAGCTTGTCATCATTCTGTTAGCTGCATTAGTTAGCCCGGTTGGAGAATTCTGCTTTGTTTTCTTTTTTCCACTGTCTTCGCTTCACATGAAGCATGTTTCTGCAGACATGAACTCATTTATCTATGCTTATTTTTGTAATGTCAAAAGAATATTTCTAGGGATAGGTTTAAGTGTGAAATTAGGGAACTTTACCCTATGGTCATTGGACTGTTCAACGTTTAGGCTTGAGCATGATTGACCTGGAAAATTACCATGGAACAATAGCATTAAATCTTTCCATTGAGGAGTTATTCTTCATTCTTCTTCATTCAGTTTTCATTCACTAATTATATCCCCTCTCGCTTGATGTCAATCATGTGATAAATAAATTGGTTGAGGTATTGATGTCACCCATAGCGTGGGTGATGGAGTACAGTAGTGTGCTAGCTGTTGTTGCTATTGACTGTGGTTCTAAAATCTAACCGGTTGGGATATACTTTCAAGTGAGAGGTCTTCGTAAAATTACTTTAAGTGTCTTGCCATAAGACTTTGGACAGAGATTACAATATGCTTATACTCCATTTAACTTGACATGAACTTAAAGAAAAAGGAAGACATTTGAAATTTGTAGTCTAAATTAAAACTGGATATTTGTGTAGCTATTAATCAATTTGCTAAGGGCAAAGGGGGGGGGGGGGGGGGATTTTAATAAATTATCTTTATTATTATAGAAATATTACATTCCTTTTAGGATGGACTAAAAAGGAAAGTGGTACCACATTAATTGGGACAGAGGGAGTAGTACACTTGCTTTAAGGTGTGGTAGTATGTGCTCAACATGAAACTTGCATATTTTGATGTATTCCAAACTGTAATTCAAAATATTGCAAATTCTTCCTCTGTTTGTTCAGATGGCCTCTTGTTAATGTTGCATCAATTGTGGACTTTAGTGGAGTTTGAGTTTGTTAATGTTGCATCAATCGTTGACTTCAGTGGAGTTTGAGTGTCTGAGTGATCCTCAGTTTCTTTAAGGATATACTGAGAAAAATAGTCACTTTGCTTTTATCACCTGACATAATTGATGAACTGTGATAAGGTTTAGTTAGTGAGAGAAAGAATATGCAACCTAATTTGAATCAAATCATTTAAGAATCATGTAATAGCAGTCTCTGCACTTGGACCAACCTCAAATCAATCACTGTGCTGGGTGATGTTCCTTTTGTTTCTGTTTTCTGTCTTGAATCCAAAATAATTTTGAAAGAGTTTTCTAGCATGTGACATCCAATGTCGACTAGATTTGGAATAGGGCAGCTTTACCAGTTTTCAAAGTCCAGGACTTGGTGGAAGTTTTCAGTTTTGATATATATATATTAATGTAAAACTGGAGCTGGAAGAGATGCATAAAGGCTTAGGAATAGGTTCCTGCCTAGTGGTTTTGGAATAGATCAAACCCTGCAGAATGTCCTTGACAGTTTCATAAAGATACCTGTTATTTTATCATTTTTCTTTTCCTTTCCTTTTTGATATAAATTTGGCACATATGTGCGTTGTATCAATTAGAAATTGTTGGATGGATGCTAAGAGGTTCCTTCAACCCCTTTCTCCCTGTCTTGTGTCCTTTGCTTTCATACTGGTGATATTTATTTGAAGCACTTGGTTCTTATTTGGTCTCATCTCATGTGCAGGGTCCACTTTCTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTCTTTTGTGAAGCGAATCTCAGATTTCCATCTGCTACTGTTGCTGGCGAAATTTCTGGACATTAATGCAGATGTTCCTGCATTGGCAGAATGTGTGCTTACACAGTCAGCTGTCCCAGAAGGTTACAAGCTCCTTATAGAATCGATGGCTAGTGCCTCTTAAGCAGCATCGCAGACATCAGGTACCAGTGATGACATTCTCTTGAGTCGTTACATGTGTTGCAGTGCAGAAATCCTCTTAATGTTATATTTACCACCAATGAGCTGTTTGGATACTTTTGTTAAATTATATTTGGTTTAATATAATTGGTTGAAGTTAAATTCTTCATATGTTATGGATGTGAGGGTATGAAGATGTTTATTGCGCATGTCTTTTATTGTATCGTCGTATCATAAATTTATAATTCTAATGAGAAGTTGCAGTGTTTTGAAGCTCGATTTAACAAAATATTCTGTTAAAAGGCATTTCTATTGTCCACCCTTTGGGGGTGTCTCAAGAATGATAAATGCACACATGATTGTTCTTCTTAAACATGTAGAATAGAGTATTTGTTTGTTGTCTCTCTCTCCCGCAGTAATTGAAATTTGGATAGGAATAATCGATCGTTTGTTTGTGCAAAAAACAGATGAGTTATCTCATTCTGTAACAAGCATTGCATGTCATCTAGGGCTCCATCTGCAATGGTCATCATTTCTCATCAAAACACTACTACTCCATATGATTATTATATACATACAGAAGTGCAAATCTATGGAGATGAATTACGGACGTATGCCTTGTGGGAATCTATATTTGCCTCATTGCTAACTTTACTATGACGTGTCCGACAGATACCGTATGAAAAATCACAAA</genome_strand>
        <mrna_strand>GGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTTTTGGTTGTTGTCAAGATTGCGGATCACCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCACTTTTTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTTTTTTGTGAAGCGAATTTCAGATTTCCATTTGCTACTGTTGCTGGCGAAATTTTTGGACATTAATGCAGATGTTCCTGCATTGGCAGAATGTGTGCTTACACAGTCAGCTGTCCCAGAAGGTTACAAGCTCCTTATAGAATCGATGGCTAGTGCCTTTTAAGCAGCATCGCAGACATCAGGTACCAGTGATGACATTTTCTTGAGTCGTTACATGTGTTGCAGTGCAGAAATCCTTTTAATGTTATATTTACCACCAATGAGCTGTTTGGATACTTTTGTTAAATTATATTTGGTTTAATATAATTGGTTGAAGTTAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392619" ref_strand="+" ref_description="SGN-E392619 [TUS-35-J4](-)">
      <seq>atgacgatggcgctgccgatgtacattttgaggcttttcagatgagtgatatgtgtgtgagattgttcaaggaaggctggtttgagacggatgttaaggatgagattgatccaaagctttccaagatgaagaaagatgtggtggtaggagtcaaggacacaagagaagttgataacgacttcttcttggttgttgtcaagattgcggatcaccagggtccactttcttcatcatttcccattgaaaacaggattattccagtgagcatgaatgcattgaaagatcatttcaatcgaacaaagagtctttcttttgtgaagcgaatctcagatttccatctgctactgttgctggcgaaatttctggacattaatgcagatgttcctgcattggcagaatgtgtgcttacacagtcagctgtcccagaaggttacaagctccttatagaatcgatggctagtgcctcttaagcagcatcgcagacatcaggtaccagtgatgacattctcttgagtcgttacatgtgttgcagtgcagaaatcctcttaatgttatatttaccaccaatgagctgtttggatacttttgttaaattatatttggtttaatataattggttgaagttaaattcttcataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26793" stop="100532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27093" g_stop="27307" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27308" i_stop="29635" i_length="2328">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29636" g_stop="30070" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="650" r_length="435" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E392619" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27093" e_stop="27307"/>
          <exon e_start="29636" e_stop="30070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCGGATCACCAGGTGCGTTGGATTTATTGCATAGCTTTTTCTTTGAATCCTTTTTGTGTGCTCCATTAGTTGCTAGATGAATTACATTTGTTTGCTTTCCTTAAATTGCATAAAGTGAGTAACTTTATGATCATACTATGAGGAGAAAAATGAAGGCAGTGAGAAAAAGAACTGAACAGAAGAAATACTACACTATTGGTAAGAATTGGCGGTAGAACATCTAAGTATTGATTAAAAGATGCCTTTTTTAATTGTCTTTGGTTGGAACTGTTGAGAATAGAGAAACCTTACTACGGCATTAAAACACATGCTTAATTTAAGTAGCTGTGTGTTTTATGTAGTTTTAGCGAATCGGGTGTTGGTCAAAGCCCCCAAGTAGACATTTGTGTTGCCATATACTTCATCCTACAATTTGAACCTGTTAGGCGGTGATGATAGAACCTAATACTCTATGGTTTCGTGTGTAGTTTGAGAACATCATAAGAACTAGGCAGATCAGAAGGACGCTGAGTCTCAAGTGACTTAATCACTTTTCTCATCTTTTAGATCATCTAACTCATCCTTTCTGATTCGTAACCTTTTTGAAGATTTTTGGGTAATGTAGTTTGCCCCCCCCCCCCCCCTCAGTAGGTGATTTAGCATGTTTCATCATATATTTTTCTCTGATTTGCTTTCAGCTTGTCATCATTCTGTTAGCTGCATTAGTTAGCCCGGTTGGAGAATTCTGCTTTGTTTTCTTTTTTCCACTGTCTTCGCTTCACATGAAGCATGTTTCTGCAGACATGAACTCATTTATCTATGCTTATTTTTGTAATGTCAAAAGAATATTTCTAGGGATAGGTTTAAGTGTGAAATTAGGGAACTTTACCCTATGGTCATTGGACTGTTCAACGTTTAGGCTTGAGCATGATTGACCTGGAAAATTACCATGGAACAATAGCATTAAATCTTTCCATTGAGGAGTTATTCTTCATTCTTCTTCATTCAGTTTTCATTCACTAATTATATCCCCTCTCGCTTGATGTCAATCATGTGATAAATAAATTGGTTGAGGTATTGATGTCACCCATAGCGTGGGTGATGGAGTACAGTAGTGTGCTAGCTGTTGTTGCTATTGACTGTGGTTCTAAAATCTAACCGGTTGGGATATACTTTCAAGTGAGAGGTCTTCGTAAAATTACTTTAAGTGTCTTGCCATAAGACTTTGGACAGAGATTACAATATGCTTATACTCCATTTAACTTGACATGAACTTAAAGAAAAAGGAAGACATTTGAAATTTGTAGTCTAAATTAAAACTGGATATTTGTGTAGCTATTAATCAATTTGCTAAGGGCAAAGGGGGGGGGGGGGGGGGATTTTAATAAATTATCTTTATTATTATAGAAATATTACATTCCTTTTAGGATGGACTAAAAAGGAAAGTGGTACCACATTAATTGGGACAGAGGGAGTAGTACACTTGCTTTAAGGTGTGGTAGTATGTGCTCAACATGAAACTTGCATATTTTGATGTATTCCAAACTGTAATTCAAAATATTGCAAATTCTTCCTCTGTTTGTTCAGATGGCCTCTTGTTAATGTTGCATCAATTGTGGACTTTAGTGGAGTTTGAGTTTGTTAATGTTGCATCAATCGTTGACTTCAGTGGAGTTTGAGTGTCTGAGTGATCCTCAGTTTCTTTAAGGATATACTGAGAAAAATAGTCACTTTGCTTTTATCACCTGACATAATTGATGAACTGTGATAAGGTTTAGTTAGTGAGAGAAAGAATATGCAACCTAATTTGAATCAAATCATTTAAGAATCATGTAATAGCAGTCTCTGCACTTGGACCAACCTCAAATCAATCACTGTGCTGGGTGATGTTCCTTTTGTTTCTGTTTTCTGTCTTGAATCCAAAATAATTTTGAAAGAGTTTTCTAGCATGTGACATCCAATGTCGACTAGATTTGGAATAGGGCAGCTTTACCAGTTTTCAAAGTCCAGGACTTGGTGGAAGTTTTCAGTTTTGATATATATATATTAATGTAAAACTGGAGCTGGAAGAGATGCATAAAGGCTTAGGAATAGGTTCCTGCCTAGTGGTTTTGGAATAGATCAAACCCTGCAGAATGTCCTTGACAGTTTCATAAAGATACCTGTTATTTTATCATTTTTCTTTTCCTTTCCTTTTTGATATAAATTTGGCACATATGTGCGTTGTATCAATTAGAAATTGTTGGATGGATGCTAAGAGGTTCCTTCAACCCCTTTCTCCCTGTCTTGTGTCCTTTGCTTTCATACTGGTGATATTTATTTGAAGCACTTGGTTCTTATTTGGTCTCATCTCATGTGCAGGGTCCACTTTCTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTCTTTTGTGAAGCGAATCTCAGATTTCCATCTGCTACTGTTGCTGGCGAAATTTCTGGACATTAATGCAGATGTTCCTGCATTGGCAGAATGTGTGCTTACACAGTCAGCTGTCCCAGAAGGTTACAAGCTCCTTATAGAATCGATGGCTAGTGCCTCTTAAGCAGCATCGCAGACATCAGGTACCAGTGATGACATTCTCTTGAGTCGTTACATGTGTTGCAGTGCAGAAATCCTCTTAATGTTATATTTACCACCAATGAGCTGTTTGGATACTTTTGTTAAATTATATTTGGTTTAATATAATTGGTTGAAGTTAAATTCTTCATATGTTATGGATGTG</genome_strand>
        <mrna_strand>ATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCGGATCACCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCACTTTCTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTCTTTTGTGAAGCGAATCTCAGATTTCCATCTGCTACTGTTGCTGGCGAAATTTCTGGACATTAATGCAGATGTTCCTGCATTGGCAGAATGTGTGCTTACACAGTCAGCTGTCCCAGAAGGTTACAAGCTCCTTATAGAATCGATGGCTAGTGCCTCTTAAGCAGCATCGCAGACATCAGGTACCAGTGATGACATTCTCTTGAGTCGTTACATGTGTTGCAGTGCAGAAATCCTCTTAATGTTATATTTACCACCAATGAGCTGTTTGGATACTTTTGTTAAATTATATTTGGTTTAATATAATTGGTTGAAGTTAAATTCTTCATAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539370" ref_strand="+" ref_description="SGN-E539370 [TUS-59-B14](-)">
      <seq>ctttccaagatgaagaaagatgtggtggtaggagtcaaggacacaagagaagttgataacgacttcttcttggttgttgtcaagattgcggatcaccagggtccactttcttcatcatttcccattgaaaacaggattattccagtgagcattaatgcattgaaagatcatttcaatcgaacaaagagtctttcttttgtgaagcgaatctcagatttccatctgctactgtagctggcgaaatttctggacattaatgcagatgttcctgcattggcagaatgtgtgcttacacagtcagctgtcccagaaggttacaagctccttatagaatcgatggctagtgcctcttaagcagcatcgcagacatcaggtaccagtgatgacattctcttgagtcgttacatgtgttgcagtgcagaaatcctcttaatgttatatttaccaccaatgagctgtttggatacttttgttaaattatatttggtttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26909" stop="30328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27209" g_stop="27307" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27308" i_stop="29635" i_length="2328">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29636" g_stop="30028" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="492" r_length="393" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E539370" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27209" e_stop="27307"/>
          <exon e_start="29636" e_stop="30028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCGGATCACCAGGTGCGTTGGATTTATTGCATAGCTTTTTCTTTGAATCCTTTTTGTGTGCTCCATTAGTTGCTAGATGAATTACATTTGTTTGCTTTCCTTAAATTGCATAAAGTGAGTAACTTTATGATCATACTATGAGGAGAAAAATGAAGGCAGTGAGAAAAAGAACTGAACAGAAGAAATACTACACTATTGGTAAGAATTGGCGGTAGAACATCTAAGTATTGATTAAAAGATGCCTTTTTTAATTGTCTTTGGTTGGAACTGTTGAGAATAGAGAAACCTTACTACGGCATTAAAACACATGCTTAATTTAAGTAGCTGTGTGTTTTATGTAGTTTTAGCGAATCGGGTGTTGGTCAAAGCCCCCAAGTAGACATTTGTGTTGCCATATACTTCATCCTACAATTTGAACCTGTTAGGCGGTGATGATAGAACCTAATACTCTATGGTTTCGTGTGTAGTTTGAGAACATCATAAGAACTAGGCAGATCAGAAGGACGCTGAGTCTCAAGTGACTTAATCACTTTTCTCATCTTTTAGATCATCTAACTCATCCTTTCTGATTCGTAACCTTTTTGAAGATTTTTGGGTAATGTAGTTTGCCCCCCCCCCCCCCCTCAGTAGGTGATTTAGCATGTTTCATCATATATTTTTCTCTGATTTGCTTTCAGCTTGTCATCATTCTGTTAGCTGCATTAGTTAGCCCGGTTGGAGAATTCTGCTTTGTTTTCTTTTTTCCACTGTCTTCGCTTCACATGAAGCATGTTTCTGCAGACATGAACTCATTTATCTATGCTTATTTTTGTAATGTCAAAAGAATATTTCTAGGGATAGGTTTAAGTGTGAAATTAGGGAACTTTACCCTATGGTCATTGGACTGTTCAACGTTTAGGCTTGAGCATGATTGACCTGGAAAATTACCATGGAACAATAGCATTAAATCTTTCCATTGAGGAGTTATTCTTCATTCTTCTTCATTCAGTTTTCATTCACTAATTATATCCCCTCTCGCTTGATGTCAATCATGTGATAAATAAATTGGTTGAGGTATTGATGTCACCCATAGCGTGGGTGATGGAGTACAGTAGTGTGCTAGCTGTTGTTGCTATTGACTGTGGTTCTAAAATCTAACCGGTTGGGATATACTTTCAAGTGAGAGGTCTTCGTAAAATTACTTTAAGTGTCTTGCCATAAGACTTTGGACAGAGATTACAATATGCTTATACTCCATTTAACTTGACATGAACTTAAAGAAAAAGGAAGACATTTGAAATTTGTAGTCTAAATTAAAACTGGATATTTGTGTAGCTATTAATCAATTTGCTAAGGGCAAAGGGGGGGGGGGGGGGGGATTTTAATAAATTATCTTTATTATTATAGAAATATTACATTCCTTTTAGGATGGACTAAAAAGGAAAGTGGTACCACATTAATTGGGACAGAGGGAGTAGTACACTTGCTTTAAGGTGTGGTAGTATGTGCTCAACATGAAACTTGCATATTTTGATGTATTCCAAACTGTAATTCAAAATATTGCAAATTCTTCCTCTGTTTGTTCAGATGGCCTCTTGTTAATGTTGCATCAATTGTGGACTTTAGTGGAGTTTGAGTTTGTTAATGTTGCATCAATCGTTGACTTCAGTGGAGTTTGAGTGTCTGAGTGATCCTCAGTTTCTTTAAGGATATACTGAGAAAAATAGTCACTTTGCTTTTATCACCTGACATAATTGATGAACTGTGATAAGGTTTAGTTAGTGAGAGAAAGAATATGCAACCTAATTTGAATCAAATCATTTAAGAATCATGTAATAGCAGTCTCTGCACTTGGACCAACCTCAAATCAATCACTGTGCTGGGTGATGTTCCTTTTGTTTCTGTTTTCTGTCTTGAATCCAAAATAATTTTGAAAGAGTTTTCTAGCATGTGACATCCAATGTCGACTAGATTTGGAATAGGGCAGCTTTACCAGTTTTCAAAGTCCAGGACTTGGTGGAAGTTTTCAGTTTTGATATATATATATTAATGTAAAACTGGAGCTGGAAGAGATGCATAAAGGCTTAGGAATAGGTTCCTGCCTAGTGGTTTTGGAATAGATCAAACCCTGCAGAATGTCCTTGACAGTTTCATAAAGATACCTGTTATTTTATCATTTTTCTTTTCCTTTCCTTTTTGATATAAATTTGGCACATATGTGCGTTGTATCAATTAGAAATTGTTGGATGGATGCTAAGAGGTTCCTTCAACCCCTTTCTCCCTGTCTTGTGTCCTTTGCTTTCATACTGGTGATATTTATTTGAAGCACTTGGTTCTTATTTGGTCTCATCTCATGTGCAGGGTCCACTTTCTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTCTTTTGTGAAGCGAATCTCAGATTTCCATCTGCTACTGTTGCTGGCGAAATTTCTGGACATTAATGCAGATGTTCCTGCATTGGCAGAATGTGTGCTTACACAGTCAGCTGTCCCAGAAGGTTACAAGCTCCTTATAGAATCGATGGCTAGTGCCTCTTAAGCAGCATCGCAGACATCAGGTACCAGTGATGACATTCTCTTGAGTCGTTACATGTGTTGCAGTGCAGAAATCCTCTTAATGTTATATTTACCACCAATGAGCTGTTTGGATACTTTTGTTAAATTATATTTGGTTTAA</genome_strand>
        <mrna_strand>CTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCGGATCACCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCACTTTCTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATTAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTCTTTTGTGAAGCGAATCTCAGATTTCCATCTGCTACTGTAGCTGGCGAAATTTCTGGACATTAATGCAGATGTTCCTGCATTGGCAGAATGTGTGCTTACACAGTCAGCTGTCCCAGAAGGTTACAAGCTCCTTATAGAATCGATGGCTAGTGCCTCTTAAGCAGCATCGCAGACATCAGGTACCAGTGATGACATTCTCTTGAGTCGTTACATGTGTTGCAGTGCAGAAATCCTCTTAATGTTATATTTACCACCAATGAGCTGTTTGGATACTTTTGTTAAATTATATTTGGTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317141" ref_strand="+" ref_description="SGN-E317141 [cTOA-27-J24]">
      <seq>ttcttctctcctaaaccattaatttcagccataaccaacaaagcttttgctttcttgtgaagcattcctacttttttgcctttgctgttggcaaaaaagaaataaccaacttatataagcctttcctatcattcttctcttcagctatacgataataatgataccattctttcttctgcttcttctgcagagcactagtttctctgtacatgccattttagacccaattgatttcttagctttacaagcgattcgaaaaggcttggatgatttgcccggttccaactattttgcttcctgggatttcacttcggagccctgtaacttcgccggagtttactgcgatggagataaagtgatcgccttgaatctcggtgatcccagagccggagcaccagggttaactggaaacttggatccttctattggaaaactctctgctcttgcggagttcacggtggttccgggtcggataactggtccattgcccgaaagtttttctcagttgaagaagctgagatttctaggagttagccggaactttctctccggtgatattccggcgtcattaggccttctccgggagctacaaactcttgatcttagtttcaatcagctgaccgggagcatcccttgggctattggagctcttccggcattgtccaacattatactgtgtcacaaccacttgtccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35617" stop="34323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35317" g_stop="34623" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E317141" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35317" e_stop="34623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTCTCCTAAACCATTAATTTCAGCCATAACCAACAAAGCTTTTGCTTTCTTGTGAAGCATTCCTACTTTTTTGCCTTTGCTGTTGGCAAAAAAGAAATAACCAACTTATATAAGCCTTTCCTATCATTCTTCTCTTCAGCTATACGATAATAATGATACCATTCTTTCTTCTGCTTCTTCTGCAGAGCACTAGTTTCTCTGTACATGCCATTTTAGACCCAATTGATTTCTTAGCTTTACAAGCGATTCGAAAAGGCTTGGATGATTTGCCCGGTTCCAACTATTTTGCTTCCTGGGATTTCACTTCGGAGCCCTGTAACTTCGCCGGAGTTTACTGCGATGGAGATAAAGTGATCGCCTTGAATCTCGGTGATCCCAGAGCCGGAGCACCAGGGTTAACTGGAAACTTGGATCCTTCTATTGGAAAACTCTCTGCTCTTGCGGAGTTCACGGTGGTTCCGGGTCGGATAACTGGTCCATTGCCCGAAAGTTTTTCTCAGTTGAAGAAGCTGAGATTTCTAGGAGTTAGCCGGAACTTTCTCTCCGGTGATATTCCGGCGTCATTAGGCCTTCTCCGGGAGCTACAAACTCTTGATCTTAGTTTCAATCAGCTGACCGGGAGCATCCCTTGGGCTATTGGAGCTCTTCCGGCATTGTCCAACATTATACTGTGTCACAACCACTTGTCCG</genome_strand>
        <mrna_strand>TTCTTCTCTCCTAAACCATTAATTTCAGCCATAACCAACAAAGCTTTTGCTTTCTTGTGAAGCATTCCTACTTTTTTGCCTTTGCTGTTGGCAAAAAAGAAATAACCAACTTATATAAGCCTTTCCTATCATTCTTCTCTTCAGCTATACGATAATAATGATACCATTCTTTCTTCTGCTTCTTCTGCAGAGCACTAGTTTCTCTGTACATGCCATTTTAGACCCAATTGATTTCTTAGCTTTACAAGCGATTCGAAAAGGCTTGGATGATTTGCCCGGTTCCAACTATTTTGCTTCCTGGGATTTCACTTCGGAGCCCTGTAACTTCGCCGGAGTTTACTGCGATGGAGATAAAGTGATCGCCTTGAATCTCGGTGATCCCAGAGCCGGAGCACCAGGGTTAACTGGAAACTTGGATCCTTCTATTGGAAAACTCTCTGCTCTTGCGGAGTTCACGGTGGTTCCGGGTCGGATAACTGGTCCATTGCCCGAAAGTTTTTCTCAGTTGAAGAAGCTGAGATTTCTAGGAGTTAGCCGGAACTTTCTCTCCGGTGATATTCCGGCGTCATTAGGCCTTCTCCGGGAGCTACAAACTCTTGATCTTAGTTTCAATCAGCTGACCGGGAGCATCCCTTGGGCTATTGGAGCTCTTCCGGCATTGTCCAACATTATACTGTGTCACAACCACTTGTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217356" ref_strand="+" ref_description="SGN-E217356 [cLEL-21-A13](-)">
      <seq>ggtgtgtgcaatgtctgcagcaggtgaaacatgaatattttcttgtgaagaacaaacttgaaaccttgatgatgctggagaagcaaatcttggcggctggtggtaggattcctgacctgtcatagctaggtgctaatgatttgaagtccacatcctgagagaaagatagtagagagaaaagttggcagtagagatgagattcaagattgctggattgtaatagttgtagatgcaaagtatttccatgtgaataacagaccttttaggtgttgaactatttatacaattctagttgttgaactttttaacccttgaatggtttactgtgctttagccattaagtagtagaacttttcagcttgttaagtagtcgtattatattgtaaatgcacatggaagtttgtttgactgcttcatatatgagtaggtagtttcaataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39342" stop="37758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39042" g_stop="38969" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38968" i_stop="38428" i_length="541">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38427" g_stop="38046" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="456" r_length="382" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E217356" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39042" e_stop="38969"/>
          <exon e_start="38427" e_stop="38046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATGGTAAGTACTCTTCTACAAATGTTTGGGATTTCCAGGTCTCAGTACCATACTGTTGAAGAAAATGCTATTTAGTACATGATGCTTAAATTTCAGTGGGTCAAGTGTGGGGATTCTGATGCTCTGCCAATTTAGATCTTTCACAAATTATTTCGCGATAAAGTTTGACAGGGTACGTGTTATAGGTCATACTATTTGACAAGCAATACCTAGAGGCTGGTGTTTGATAATGAAACAGCCCTCTCAGCATCCCCTCATTTGATTTAAACTTTTCCTCTCAAGTAATGTTGGAGTCCATGATTTCCTAGCAAGAAAATTTTTCATGTTTTCTGCTTATAACTAGTTTAAAAAATTTTAAGTTTTCTTGTCACTTCCTTTTACCTGTTTAAAGCCAGGTTTCTGACATTGAATTCTCTTCCATGATTAGGCTTAAATAAAAACTTTTTATTCCAAAGATGTTGCAACTATGTCCAATACATGAATAGTTATTTTTTTTCTAAGTCTGTAAAATCAGCTAAATTGCAGCTTGTTTATAAAATTGCAGCTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAAGTTGGCAGTAGAGATGAGATTCAAGATTGCTGGATTGTAATAGTTGTAGATGCAAAGTATTTCCATGTGAATAACAGACCTTTTAGGTGTTGAACTATTTATACAATTCTAGTTGTTGAACTTTTTAACCCTTGAATGGTTTACTGTGCTTTAGCCATTAAGTAGTAGAACTTTTCAGCTTGTTAAGTAGTCGTATTATATTGTAAATGCACATGGAAGTTTGTTTGACTGCTTGATATATGAGTAGGTAGTTTCAATAAACAAGTTGTCAGAAAA</genome_strand>
        <mrna_strand>GGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAAGTTGGCAGTAGAGATGAGATTCAAGATTGCTGGATTGTAATAGTTGTAGATGCAAAGTATTTCCATGTGAATAACAGACCTTTTAGGTGTTGAACTATTTATACAATTCTAGTTGTTGAACTTTTTAACCCTTGAATGGTTTACTGTGCTTTAGCCATTAAGTAGTAGAACTTTTCAGCTTGTTAAGTAGTCGTATTATATTGTAAATGCACATGGAAGTTTGTTTGACTGCTTCATATATGAGTAGGTAGTTTCAATAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217277" ref_strand="+" ref_description="SGN-E217277 [cLEL-21-A15](-)">
      <seq>tttcttgtgaagaacaaacttgaaaccttgatgatgctggagaagcaaatcttggcggctggtggtaggattcctgacctgtcatagctaggtgctaatgatttgaagtccacgtcctcaccgtaagatagtagagaggaaagttggcagtagagattagattcaagagtgctggagtgtaatagttgtagatgcaaagtatttccatgtgaataacagaccttttaggtgttgaactatttatacaattctagttgttgaactttttaacccttgaatggtttactgtgctttagccattaagtagtagaacttttcagcttgttaagtagtcgtattatattgtaaatgcacatggaagtttgtttgactgcttgatatatgagtaggtagtttcaataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39304" stop="37758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39004" g_stop="38969" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38968" i_stop="38428" i_length="541">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38427" g_stop="38046" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="418" r_length="382" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E217277" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39004" e_stop="38969"/>
          <exon e_start="38427" e_stop="38046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTGTGAAGAACAAACTTGAAACCTTGATGATGGTAAGTACTCTTCTACAAATGTTTGGGATTTCCAGGTCTCAGTACCATACTGTTGAAGAAAATGCTATTTAGTACATGATGCTTAAATTTCAGTGGGTCAAGTGTGGGGATTCTGATGCTCTGCCAATTTAGATCTTTCACAAATTATTTCGCGATAAAGTTTGACAGGGTACGTGTTATAGGTCATACTATTTGACAAGCAATACCTAGAGGCTGGTGTTTGATAATGAAACAGCCCTCTCAGCATCCCCTCATTTGATTTAAACTTTTCCTCTCAAGTAATGTTGGAGTCCATGATTTCCTAGCAAGAAAATTTTTCATGTTTTCTGCTTATAACTAGTTTAAAAAATTTTAAGTTTTCTTGTCACTTCCTTTTACCTGTTTAAAGCCAGGTTTCTGACATTGAATTCTCTTCCATGATTAGGCTTAAATAAAAACTTTTTATTCCAAAGATGTTGCAACTATGTCCAATACATGAATAGTTATTTTTTTTCTAAGTCTGTAAAATCAGCTAAATTGCAGCTTGTTTATAAAATTGCAGCTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAAGTTGGCAGTAGAGATGAGATTCAAGATTGCTGGATTGTAATAGTTGTAGATGCAAAGTATTTCCATGTGAATAACAGACCTTTTAGGTGTTGAACTATTTATACAATTCTAGTTGTTGAACTTTTTAACCCTTGAATGGTTTACTGTGCTTTAGCCATTAAGTAGTAGAACTTTTCAGCTTGTTAAGTAGTCGTATTATATTGTAAATGCACATGGAAGTTTGTTTGACTGCTTGATATATGAGTAGGTAGTTTCAATAAACAAGTTGTCAGAAAA</genome_strand>
        <mrna_strand>TTTCTTGTGAAGAACAAACTTGAAACCTTGATGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACGTCCTCACCGTAAGATAGTAGAGAGGAAAGTTGGCAGTAGAGATTAGATTCAAGAGTGCTGGAGTGTAATAGTTGTAGATGCAAAGTATTTCCATGTGAATAACAGACCTTTTAGGTGTTGAACTATTTATACAATTCTAGTTGTTGAACTTTTTAACCCTTGAATGGTTTACTGTGCTTTAGCCATTAAGTAGTAGAACTTTTCAGCTTGTTAAGTAGTCGTATTATATTGTAAATGCACATGGAAGTTTGTTTGACTGCTTGATATATGAGTAGGTAGTTTCAATAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369178" ref_strand="+" ref_description="SGN-E369178 [TUS-23-G22](-)">
      <seq>aaaccttatcaacaatctgacagcagctcttcaacaacaggttgtagattttaagcaagttgattcccatgtccaccagttcaagggtagcagttccagcataggtgcacaaagagtaaagaatgcttgtgtggcttttaaaaccttctgcgaagggaagaacattgaagggtgtgtgcaatgtctgcagcaggtgaaacatgaatattttcttgtgaagaacaaacttgaaaccttgatgatgctggagaagcaaatcttggcggctggtggtaggattcctgacctgtcatagctaggtgctaatgatttgaagtccacatcctgagagaaagatagtagagagaaaagttggcagtagagatgagattcaagattgctggattgtaatagttgtagatgcaaagtatttccatgtgaataacagaccttttaggtgttgaactatttatacaattctagttgttgaactttttaacccttgaatggtttactgtgctttagccattaagtagtagaacttttcagcttgttaagtagtcgtattatattgtaaatgcacatggaagtttgtttgactgcttgatatatgagtaggtagtttcaataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41678" stop="37758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41378" g_stop="41349" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41348" i_stop="41272" i_length="77">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.606" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41271" g_stop="41203" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="99" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41202" i_stop="40984" i_length="219">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40983" g_stop="40912" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="171" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40911" i_stop="39042" i_length="1870">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39041" g_stop="38969" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="244" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38968" i_stop="38428" i_length="541">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38427" g_stop="38058" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="614" r_length="370" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E369178" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41378" e_stop="41349"/>
          <exon e_start="41271" e_stop="41203"/>
          <exon e_start="40983" e_stop="40912"/>
          <exon e_start="39041" e_stop="38969"/>
          <exon e_start="38427" e_stop="38058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAGGTATCCAATTTTCCTTTTCTGCCATACATTTTTAGGTTTTTGTCATTGACTAAACTACTTTAATTGATGCTTGAAGTTGTATCTTTTTGGTAGACAAGTGATACATCCTGAGTGAATTTTATTGTGATCAAAGATTTAGCCGAATTTAGGTTATTGAATGGAAGTCTTTTAGGAGTTAGTAGTATCCCCATTAATCAGAATCTCTGTTATATTTTGCAGCATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGGGTGGGTATAGCTTGATTCTTTTACAATTTTTGCCTTTATCTATCTATCTATCTATTTGTATTATAAGGGTTTGGGTTTTTAGAAGATTTACATAAAAAGATTTGACTTTGTAGACATTAAGAAGACATGTTGGAAATTTTGTTTTCTACCATGTAAATCATAAGTCATTGGTTTTTTTTTTGCGTATAGTGATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATCCAAGGGTGTGTCCTTCTGGTCAATGAAGTGGGCTAAGAACCACGAGATCTCGGGTTAAAATCCCAGTAGAGACAAAAACACTAGGTGTTCTCTTCCCACCCTAGACTTGAGAACCATAAGGTCTCGAGTGGCAGGCATCCCGTGGAATTAGTCGAGGAACACGCAAGTTGGTCTGGACACAAGATTATAAAAAAAAAATTAAGATTTACCTATGATCATGTGGTATATTCTTGGTCGCACACAAAATACATCTATAGGGCATTTTCTAAATCTGACATTATTTGATGCTAATATGGCTTTTCATTTACGAAGGTACATGTCTAGAACCTTCCAATTTATCTTTTTTCAGACATTTCTACTACATTATAATTGCAGTACCAATGTTGTCGTGTCTTGGTGGCCCCACCTCAAGCATCCTGATCTCTGTGTGTTTCTGGCTCTCTTTTGGGACATTATTTACATAGTTCCAGTAACTAAACAAAACGAATCACGCCTTCTTGGAGTTCTATGTATACAGTCACTGCAGAATAAAGAACAGAGGGATTTGAGCAGAGATGTTTCTGGTTGGTAAAAAAATAAAATTGGAGTGTAACATGCCACTCCATTCTTGTTCAACTCTTATGCTTGAAATTATCAGATCACAACAATAGACCAGCTTCACTACTGAGTCTCTAAATCTTCGCAAAATTATTGTTGCCCCTTAGGAGGACACCAGTATGAACTGCCTCTGTGCAGAGATCTTTTCAAGTACCATCTGCTCTTTTTTCTGCCTCAAATCTGCTTAAGTCTAAGTATTCTCTTTCTTCACAGTTTGAACATGAAAGGCCAATTTAATTGAAGCATCTATTAGTAAAATCTGGTTCATTTTGTTAAAGACCTCATTTAAGAGCTAGAAAAGGTATGCCCTAACACTTAAAGATGACGTGGATTACCATACCTGCTGGCATATGGTGGAGTATTTGGAAGGATATGAATAGAAGACGTTTTGGACACAAGACCTCAATCTTGGTGGAGTATCTACACATACCGTATTTCTCCAAAAAAATAAAATAAAAAAATCTAGCATTTCTAGTTATGTTATAGTATTATATTGGATGAACTATTGTTCTTTTATACTTGCCATTCTCAGCCAAAAAAAAAAGTAAATTGGAGAAACTATTGAATATACATGTATCAACTGTTGTGTAAATACATACGGAAGTAACATCAGTCAGCTAGTAAGACCATATAGCTGTGGCGTGGGTATCTAGAATAGTAACAGGTATTACTTTTTGATTACTTTCCTCGTAGGAACTTTCAAACTCTAATTATCATTTTTGATTACTTTTATGTTATCTCAAAAAAGCTAAAGCCTTTAATTTATTAATTGCTTTCAAACATGGAATATATAATCGGAAAATGGTAGTAAGAAACAACGAGACCCATATTGTAACCTTGGTTAATTTGGGATTCAAGCCTTGATGCTGTCTTGTTATTGTGTGGTGCATCTAAGTTTGATTTTTTGAGGCTCTACTCTTATTTATCTTTGTAAATTATTTTTATTTCCTTGTGCAGGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATGGTAAGTACTCTTCTACAAATGTTTGGGATTTCCAGGTCTCAGTACCATACTGTTGAAGAAAATGCTATTTAGTACATGATGCTTAAATTTCAGTGGGTCAAGTGTGGGGATTCTGATGCTCTGCCAATTTAGATCTTTCACAAATTATTTCGCGATAAAGTTTGACAGGGTACGTGTTATAGGTCATACTATTTGACAAGCAATACCTAGAGGCTGGTGTTTGATAATGAAACAGCCCTCTCAGCATCCCCTCATTTGATTTAAACTTTTCCTCTCAAGTAATGTTGGAGTCCATGATTTCCTAGCAAGAAAATTTTTCATGTTTTCTGCTTATAACTAGTTTAAAAAATTTTAAGTTTTCTTGTCACTTCCTTTTACCTGTTTAAAGCCAGGTTTCTGACATTGAATTCTCTTCCATGATTAGGCTTAAATAAAAACTTTTTATTCCAAAGATGTTGCAACTATGTCCAATACATGAATAGTTATTTTTTTTCTAAGTCTGTAAAATCAGCTAAATTGCAGCTTGTTTATAAAATTGCAGCTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAAGTTGGCAGTAGAGATGAGATTCAAGATTGCTGGATTGTAATAGTTGTAGATGCAAAGTATTTCCATGTGAATAACAGACCTTTTAGGTGTTGAACTATTTATACAATTCTAGTTGTTGAACTTTTTAACCCTTGAATGGTTTACTGTGCTTTAGCCATTAAGTAGTAGAACTTTTCAGCTTGTTAAGTAGTCGTATTATATTGTAAATGCACATGGAAGTTTGTTTGACTGCTTGATATATGAGTAGGTAGTTTCAATAAACAA</genome_strand>
        <mrna_strand>AAACCTTATCAACAATCTGACAGCAGCTCT.............................................................................TCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAG...........................................................................................................................................................................................................................CATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAAGTTGGCAGTAGAGATGAGATTCAAGATTGCTGGATTGTAATAGTTGTAGATGCAAAGTATTTCCATGTGAATAACAGACCTTTTAGGTGTTGAACTATTTATACAATTCTAGTTGTTGAACTTTTTAACCCTTGAATGGTTTACTGTGCTTTAGCCATTAAGTAGTAGAACTTTTCAGCTTGTTAAGTAGTCGTATTATATTGTAAATGCACATGGAAGTTTGTTTGACTGCTTGATATATGAGTAGGTAGTTTCAATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369179" ref_strand="+" ref_description="SGN-E369179 [TUS-23-G22]">
      <seq>ttaaaattagtatatgaaatctgtagatctgcaataaagtttgagtttttgagtcttctcccccacatcaaattcatggaaatagtagccaagttgcagaaacagttcatggacttcatttcagctttgtaccgtgagagattcttggatgatcagtttcttcagcttcagaatttgcaagatgagagcaacccagactttgttcgtgaagtagtttcacttttctttgtagattcagaaaaccttatcaacaatctgacagcagctcttcaacaacaggttgtagattttaagcaagttgattcccatgtccaccagttcaagggtagcagttccagcataggtgcacaaagagtaaagaatgcttgtgtggcttttaaaaccttctgcgaagggaagaacattgaagggtgtgtgcaatgtctgcagcaggtgaaacatgaatattttcttgtgaagaacaaacttgaaaccttgatgatgctggagaagcaaatcttggcggctggtggtaggattcctgacctgtcatagctaggtgctaatgatttgaagtccacatcctgagagaaagatagtagagagaaaagttggcagtagagatgagattcaagattgctggattgtaatagttgtagatgcaaagtatttccatgtgaataacagaccttttangtgttgaactatttatacaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41994" stop="37913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41694" g_stop="41557" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41556" i_stop="41480" i_length="77">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41479" g_stop="41349" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="269" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41348" i_stop="41272" i_length="77">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41271" g_stop="41203" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="338" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41202" i_stop="40984" i_length="219">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40983" g_stop="40912" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="410" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40911" i_stop="39042" i_length="1870">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39041" g_stop="38969" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="483" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38968" i_stop="38428" i_length="541">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38427" g_stop="38213" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="698" r_length="215" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E369179" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41694" e_stop="41557"/>
          <exon e_start="41479" e_stop="41349"/>
          <exon e_start="41271" e_stop="41203"/>
          <exon e_start="40983" e_stop="40912"/>
          <exon e_start="39041" e_stop="38969"/>
          <exon e_start="38427" e_stop="38213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAGGTGGGTTGGTTTTCTTTTTTCTTTTTACTATATTAGGGAATTTTTCTGATATGAGTTTTCTTTTGTCTTTTGAAAAGAGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAGGTATCCAATTTTCCTTTTCTGCCATACATTTTTAGGTTTTTGTCATTGACTAAACTACTTTAATTGATGCTTGAAGTTGTATCTTTTTGGTAGACAAGTGATACATCCTGAGTGAATTTTATTGTGATCAAAGATTTAGCCGAATTTAGGTTATTGAATGGAAGTCTTTTAGGAGTTAGTAGTATCCCCATTAATCAGAATCTCTGTTATATTTTGCAGCATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGGGTGGGTATAGCTTGATTCTTTTACAATTTTTGCCTTTATCTATCTATCTATCTATTTGTATTATAAGGGTTTGGGTTTTTAGAAGATTTACATAAAAAGATTTGACTTTGTAGACATTAAGAAGACATGTTGGAAATTTTGTTTTCTACCATGTAAATCATAAGTCATTGGTTTTTTTTTTGCGTATAGTGATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATCCAAGGGTGTGTCCTTCTGGTCAATGAAGTGGGCTAAGAACCACGAGATCTCGGGTTAAAATCCCAGTAGAGACAAAAACACTAGGTGTTCTCTTCCCACCCTAGACTTGAGAACCATAAGGTCTCGAGTGGCAGGCATCCCGTGGAATTAGTCGAGGAACACGCAAGTTGGTCTGGACACAAGATTATAAAAAAAAAATTAAGATTTACCTATGATCATGTGGTATATTCTTGGTCGCACACAAAATACATCTATAGGGCATTTTCTAAATCTGACATTATTTGATGCTAATATGGCTTTTCATTTACGAAGGTACATGTCTAGAACCTTCCAATTTATCTTTTTTCAGACATTTCTACTACATTATAATTGCAGTACCAATGTTGTCGTGTCTTGGTGGCCCCACCTCAAGCATCCTGATCTCTGTGTGTTTCTGGCTCTCTTTTGGGACATTATTTACATAGTTCCAGTAACTAAACAAAACGAATCACGCCTTCTTGGAGTTCTATGTATACAGTCACTGCAGAATAAAGAACAGAGGGATTTGAGCAGAGATGTTTCTGGTTGGTAAAAAAATAAAATTGGAGTGTAACATGCCACTCCATTCTTGTTCAACTCTTATGCTTGAAATTATCAGATCACAACAATAGACCAGCTTCACTACTGAGTCTCTAAATCTTCGCAAAATTATTGTTGCCCCTTAGGAGGACACCAGTATGAACTGCCTCTGTGCAGAGATCTTTTCAAGTACCATCTGCTCTTTTTTCTGCCTCAAATCTGCTTAAGTCTAAGTATTCTCTTTCTTCACAGTTTGAACATGAAAGGCCAATTTAATTGAAGCATCTATTAGTAAAATCTGGTTCATTTTGTTAAAGACCTCATTTAAGAGCTAGAAAAGGTATGCCCTAACACTTAAAGATGACGTGGATTACCATACCTGCTGGCATATGGTGGAGTATTTGGAAGGATATGAATAGAAGACGTTTTGGACACAAGACCTCAATCTTGGTGGAGTATCTACACATACCGTATTTCTCCAAAAAAATAAAATAAAAAAATCTAGCATTTCTAGTTATGTTATAGTATTATATTGGATGAACTATTGTTCTTTTATACTTGCCATTCTCAGCCAAAAAAAAAAGTAAATTGGAGAAACTATTGAATATACATGTATCAACTGTTGTGTAAATACATACGGAAGTAACATCAGTCAGCTAGTAAGACCATATAGCTGTGGCGTGGGTATCTAGAATAGTAACAGGTATTACTTTTTGATTACTTTCCTCGTAGGAACTTTCAAACTCTAATTATCATTTTTGATTACTTTTATGTTATCTCAAAAAAGCTAAAGCCTTTAATTTATTAATTGCTTTCAAACATGGAATATATAATCGGAAAATGGTAGTAAGAAACAACGAGACCCATATTGTAACCTTGGTTAATTTGGGATTCAAGCCTTGATGCTGTCTTGTTATTGTGTGGTGCATCTAAGTTTGATTTTTTGAGGCTCTACTCTTATTTATCTTTGTAAATTATTTTTATTTCCTTGTGCAGGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATGGTAAGTACTCTTCTACAAATGTTTGGGATTTCCAGGTCTCAGTACCATACTGTTGAAGAAAATGCTATTTAGTACATGATGCTTAAATTTCAGTGGGTCAAGTGTGGGGATTCTGATGCTCTGCCAATTTAGATCTTTCACAAATTATTTCGCGATAAAGTTTGACAGGGTACGTGTTATAGGTCATACTATTTGACAAGCAATACCTAGAGGCTGGTGTTTGATAATGAAACAGCCCTCTCAGCATCCCCTCATTTGATTTAAACTTTTCCTCTCAAGTAATGTTGGAGTCCATGATTTCCTAGCAAGAAAATTTTTCATGTTTTCTGCTTATAACTAGTTTAAAAAATTTTAAGTTTTCTTGTCACTTCCTTTTACCTGTTTAAAGCCAGGTTTCTGACATTGAATTCTCTTCCATGATTAGGCTTAAATAAAAACTTTTTATTCCAAAGATGTTGCAACTATGTCCAATACATGAATAGTTATTTTTTTTCTAAGTCTGTAAAATCAGCTAAATTGCAGCTTGTTTATAAAATTGCAGCTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAAGTTGGCAGTAGAGATGAGATTCAAGATTGCTGGATTGTAATAGTTGTAGATGCAAAGTATTTCCATGTGAATAACAGACCTTTTAGGTGTTGAACTATTTATACAATTC</genome_strand>
        <mrna_strand>TTAAAATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAG.............................................................................AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCT.............................................................................TCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAG...........................................................................................................................................................................................................................CATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAAGTTGGCAGTAGAGATGAGATTCAAGATTGCTGGATTGTAATAGTTGTAGATGCAAAGTATTTCCATGTGAATAACAGACCTTTTANGTGTTGAACTATTTATACAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303728" ref_strand="+" ref_description="SGN-E303728 [cLEX-4-C19]">
      <seq>ttctcccccacatcaaattcatggaaatagtagccaagttgcagaaacagttcatggacttcatttcagctttgtaccgtgagagattcttggatgatcagtttcttcagcttcagaatttgcaagatgagagcaacccagactttgttcgtgaagtagtttcacttttctttgtagattcagaaaaccttatcaacaatctgacagcagctcttcaacaacaggttgtagattttaagcaagttgattcccatgtccaccagttcaagggtagcagttccagcataggtgcacaaagagtaaagaatgcttgtgtggcttttaaaaccttctgcgaagggaagaacattgaagggtgtgtgcaatgtctgcagcaggtgaaacatgaatattttcttgtgaagaacaaacttgaaaccttgatgatgctggagaagcaaatcttggcggctggtggtaggattcctgacctgtcatagctaggtgctaatgatttgaagtccacatcctgagagaaagatagtagagagaaaagttggcagtagagatgagattcaagattgctggattgtaatagttgtagatgcaaagtatttccatgtgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41939" stop="37949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41639" g_stop="41557" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41556" i_stop="41480" i_length="77">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41479" g_stop="41349" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="214" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41348" i_stop="41272" i_length="77">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41271" g_stop="41203" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="283" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41202" i_stop="40984" i_length="219">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40983" g_stop="40912" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="355" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40911" i_stop="39042" i_length="1870">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39041" g_stop="38969" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="428" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38968" i_stop="38428" i_length="541">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38427" g_stop="38249" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="607" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E303728" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41639" e_stop="41557"/>
          <exon e_start="41479" e_stop="41349"/>
          <exon e_start="41271" e_stop="41203"/>
          <exon e_start="40983" e_stop="40912"/>
          <exon e_start="39041" e_stop="38969"/>
          <exon e_start="38427" e_stop="38249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAGGTGGGTTGGTTTTCTTTTTTCTTTTTACTATATTAGGGAATTTTTCTGATATGAGTTTTCTTTTGTCTTTTGAAAAGAGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAGGTATCCAATTTTCCTTTTCTGCCATACATTTTTAGGTTTTTGTCATTGACTAAACTACTTTAATTGATGCTTGAAGTTGTATCTTTTTGGTAGACAAGTGATACATCCTGAGTGAATTTTATTGTGATCAAAGATTTAGCCGAATTTAGGTTATTGAATGGAAGTCTTTTAGGAGTTAGTAGTATCCCCATTAATCAGAATCTCTGTTATATTTTGCAGCATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGGGTGGGTATAGCTTGATTCTTTTACAATTTTTGCCTTTATCTATCTATCTATCTATTTGTATTATAAGGGTTTGGGTTTTTAGAAGATTTACATAAAAAGATTTGACTTTGTAGACATTAAGAAGACATGTTGGAAATTTTGTTTTCTACCATGTAAATCATAAGTCATTGGTTTTTTTTTTGCGTATAGTGATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATCCAAGGGTGTGTCCTTCTGGTCAATGAAGTGGGCTAAGAACCACGAGATCTCGGGTTAAAATCCCAGTAGAGACAAAAACACTAGGTGTTCTCTTCCCACCCTAGACTTGAGAACCATAAGGTCTCGAGTGGCAGGCATCCCGTGGAATTAGTCGAGGAACACGCAAGTTGGTCTGGACACAAGATTATAAAAAAAAAATTAAGATTTACCTATGATCATGTGGTATATTCTTGGTCGCACACAAAATACATCTATAGGGCATTTTCTAAATCTGACATTATTTGATGCTAATATGGCTTTTCATTTACGAAGGTACATGTCTAGAACCTTCCAATTTATCTTTTTTCAGACATTTCTACTACATTATAATTGCAGTACCAATGTTGTCGTGTCTTGGTGGCCCCACCTCAAGCATCCTGATCTCTGTGTGTTTCTGGCTCTCTTTTGGGACATTATTTACATAGTTCCAGTAACTAAACAAAACGAATCACGCCTTCTTGGAGTTCTATGTATACAGTCACTGCAGAATAAAGAACAGAGGGATTTGAGCAGAGATGTTTCTGGTTGGTAAAAAAATAAAATTGGAGTGTAACATGCCACTCCATTCTTGTTCAACTCTTATGCTTGAAATTATCAGATCACAACAATAGACCAGCTTCACTACTGAGTCTCTAAATCTTCGCAAAATTATTGTTGCCCCTTAGGAGGACACCAGTATGAACTGCCTCTGTGCAGAGATCTTTTCAAGTACCATCTGCTCTTTTTTCTGCCTCAAATCTGCTTAAGTCTAAGTATTCTCTTTCTTCACAGTTTGAACATGAAAGGCCAATTTAATTGAAGCATCTATTAGTAAAATCTGGTTCATTTTGTTAAAGACCTCATTTAAGAGCTAGAAAAGGTATGCCCTAACACTTAAAGATGACGTGGATTACCATACCTGCTGGCATATGGTGGAGTATTTGGAAGGATATGAATAGAAGACGTTTTGGACACAAGACCTCAATCTTGGTGGAGTATCTACACATACCGTATTTCTCCAAAAAAATAAAATAAAAAAATCTAGCATTTCTAGTTATGTTATAGTATTATATTGGATGAACTATTGTTCTTTTATACTTGCCATTCTCAGCCAAAAAAAAAAGTAAATTGGAGAAACTATTGAATATACATGTATCAACTGTTGTGTAAATACATACGGAAGTAACATCAGTCAGCTAGTAAGACCATATAGCTGTGGCGTGGGTATCTAGAATAGTAACAGGTATTACTTTTTGATTACTTTCCTCGTAGGAACTTTCAAACTCTAATTATCATTTTTGATTACTTTTATGTTATCTCAAAAAAGCTAAAGCCTTTAATTTATTAATTGCTTTCAAACATGGAATATATAATCGGAAAATGGTAGTAAGAAACAACGAGACCCATATTGTAACCTTGGTTAATTTGGGATTCAAGCCTTGATGCTGTCTTGTTATTGTGTGGTGCATCTAAGTTTGATTTTTTGAGGCTCTACTCTTATTTATCTTTGTAAATTATTTTTATTTCCTTGTGCAGGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATGGTAAGTACTCTTCTACAAATGTTTGGGATTTCCAGGTCTCAGTACCATACTGTTGAAGAAAATGCTATTTAGTACATGATGCTTAAATTTCAGTGGGTCAAGTGTGGGGATTCTGATGCTCTGCCAATTTAGATCTTTCACAAATTATTTCGCGATAAAGTTTGACAGGGTACGTGTTATAGGTCATACTATTTGACAAGCAATACCTAGAGGCTGGTGTTTGATAATGAAACAGCCCTCTCAGCATCCCCTCATTTGATTTAAACTTTTCCTCTCAAGTAATGTTGGAGTCCATGATTTCCTAGCAAGAAAATTTTTCATGTTTTCTGCTTATAACTAGTTTAAAAAATTTTAAGTTTTCTTGTCACTTCCTTTTACCTGTTTAAAGCCAGGTTTCTGACATTGAATTCTCTTCCATGATTAGGCTTAAATAAAAACTTTTTATTCCAAAGATGTTGCAACTATGTCCAATACATGAATAGTTATTTTTTTTCTAAGTCTGTAAAATCAGCTAAATTGCAGCTTGTTTATAAAATTGCAGCTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAAGTTGGCAGTAGAGATGAGATTCAAGATTGCTGGATTGTAATAGTTGTAGATGCAAAGTATTTCCATGTGAATA</genome_strand>
        <mrna_strand>TTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAG.............................................................................AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCT.............................................................................TCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAG...........................................................................................................................................................................................................................CATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAAGTTGGCAGTAGAGATGAGATTCAAGATTGCTGGATTGTAATAGTTGTAGATGCAAAGTATTTCCATGTGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262813" ref_strand="+" ref_description="SGN-E262813 [cLEG-59-A23]">
      <seq>gaaatagtagccaagttgcagaaacagttcatggacttcatttcagctttgtaccgtgagagattcttggatgatcagtttcttcagcttcagaatttgcaagatgagagcaacccagactttgttcgtgaagtagtttcacttttctttgtagattcagaaaaccttatcaacaatctgacagcagctctgtgagaaataaactctttttattgtttacctttaacagaaatattggatcattagtttattatttggtcaattgtagtcaacaacaggttgtagattttaagcaagttgattcccatgtccaccagttcaagggtagcagttccagcataggtgcacaaagagtaaagaatgcttgtgtggcttttaaaaccttctgcgaagggaagaacattgaagggtgtgtgcaatgtctgcagcaggtgaaacatgaatattttcttgtgaagaacaaacttgaaaccttgatgatgctggagaagcaatcttggcggctggtggtaggattcctgacctgtcatagctaggtgctaatgatttgaagtccacatcctgagagaaagatagtagagagaaaagttggcagtagagatgagattcagattgctggattgtaatagttgtagatgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41916" stop="37967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41616" g_stop="41557" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41556" i_stop="41480" i_length="77">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41479" g_stop="41203" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="337" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41202" i_stop="40984" i_length="219">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40983" g_stop="40912" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="409" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40911" i_stop="39042" i_length="1870">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39041" g_stop="38969" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="482" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38968" i_stop="38428" i_length="541">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38427" g_stop="38267" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="641" r_length="159" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E262813" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41616" e_stop="41557"/>
          <exon e_start="41479" e_stop="41203"/>
          <exon e_start="40983" e_stop="40912"/>
          <exon e_start="39041" e_stop="38969"/>
          <exon e_start="38427" e_stop="38267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAGGTGGGTTGGTTTTCTTTTTTCTTTTTACTATATTAGGGAATTTTTCTGATATGAGTTTTCTTTTGTCTTTTGAAAAGAGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAGGTATCCAATTTTCCTTTTCTGCCATACATTTTTAGGTTTTTGTCATTGACTAAACTACTTTAATTGATGCTTGAAGTTGTATCTTTTTGGTAGACAAGTGATACATCCTGAGTGAATTTTATTGTGATCAAAGATTTAGCCGAATTTAGGTTATTGAATGGAAGTCTTTTAGGAGTTAGTAGTATCCCCATTAATCAGAATCTCTGTTATATTTTGCAGCATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGGGTGGGTATAGCTTGATTCTTTTACAATTTTTGCCTTTATCTATCTATCTATCTATTTGTATTATAAGGGTTTGGGTTTTTAGAAGATTTACATAAAAAGATTTGACTTTGTAGACATTAAGAAGACATGTTGGAAATTTTGTTTTCTACCATGTAAATCATAAGTCATTGGTTTTTTTTTTGCGTATAGTGATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATCCAAGGGTGTGTCCTTCTGGTCAATGAAGTGGGCTAAGAACCACGAGATCTCGGGTTAAAATCCCAGTAGAGACAAAAACACTAGGTGTTCTCTTCCCACCCTAGACTTGAGAACCATAAGGTCTCGAGTGGCAGGCATCCCGTGGAATTAGTCGAGGAACACGCAAGTTGGTCTGGACACAAGATTATAAAAAAAAAATTAAGATTTACCTATGATCATGTGGTATATTCTTGGTCGCACACAAAATACATCTATAGGGCATTTTCTAAATCTGACATTATTTGATGCTAATATGGCTTTTCATTTACGAAGGTACATGTCTAGAACCTTCCAATTTATCTTTTTTCAGACATTTCTACTACATTATAATTGCAGTACCAATGTTGTCGTGTCTTGGTGGCCCCACCTCAAGCATCCTGATCTCTGTGTGTTTCTGGCTCTCTTTTGGGACATTATTTACATAGTTCCAGTAACTAAACAAAACGAATCACGCCTTCTTGGAGTTCTATGTATACAGTCACTGCAGAATAAAGAACAGAGGGATTTGAGCAGAGATGTTTCTGGTTGGTAAAAAAATAAAATTGGAGTGTAACATGCCACTCCATTCTTGTTCAACTCTTATGCTTGAAATTATCAGATCACAACAATAGACCAGCTTCACTACTGAGTCTCTAAATCTTCGCAAAATTATTGTTGCCCCTTAGGAGGACACCAGTATGAACTGCCTCTGTGCAGAGATCTTTTCAAGTACCATCTGCTCTTTTTTCTGCCTCAAATCTGCTTAAGTCTAAGTATTCTCTTTCTTCACAGTTTGAACATGAAAGGCCAATTTAATTGAAGCATCTATTAGTAAAATCTGGTTCATTTTGTTAAAGACCTCATTTAAGAGCTAGAAAAGGTATGCCCTAACACTTAAAGATGACGTGGATTACCATACCTGCTGGCATATGGTGGAGTATTTGGAAGGATATGAATAGAAGACGTTTTGGACACAAGACCTCAATCTTGGTGGAGTATCTACACATACCGTATTTCTCCAAAAAAATAAAATAAAAAAATCTAGCATTTCTAGTTATGTTATAGTATTATATTGGATGAACTATTGTTCTTTTATACTTGCCATTCTCAGCCAAAAAAAAAAGTAAATTGGAGAAACTATTGAATATACATGTATCAACTGTTGTGTAAATACATACGGAAGTAACATCAGTCAGCTAGTAAGACCATATAGCTGTGGCGTGGGTATCTAGAATAGTAACAGGTATTACTTTTTGATTACTTTCCTCGTAGGAACTTTCAAACTCTAATTATCATTTTTGATTACTTTTATGTTATCTCAAAAAAGCTAAAGCCTTTAATTTATTAATTGCTTTCAAACATGGAATATATAATCGGAAAATGGTAGTAAGAAACAACGAGACCCATATTGTAACCTTGGTTAATTTGGGATTCAAGCCTTGATGCTGTCTTGTTATTGTGTGGTGCATCTAAGTTTGATTTTTTGAGGCTCTACTCTTATTTATCTTTGTAAATTATTTTTATTTCCTTGTGCAGGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATGGTAAGTACTCTTCTACAAATGTTTGGGATTTCCAGGTCTCAGTACCATACTGTTGAAGAAAATGCTATTTAGTACATGATGCTTAAATTTCAGTGGGTCAAGTGTGGGGATTCTGATGCTCTGCCAATTTAGATCTTTCACAAATTATTTCGCGATAAAGTTTGACAGGGTACGTGTTATAGGTCATACTATTTGACAAGCAATACCTAGAGGCTGGTGTTTGATAATGAAACAGCCCTCTCAGCATCCCCTCATTTGATTTAAACTTTTCCTCTCAAGTAATGTTGGAGTCCATGATTTCCTAGCAAGAAAATTTTTCATGTTTTCTGCTTATAACTAGTTTAAAAAATTTTAAGTTTTCTTGTCACTTCCTTTTACCTGTTTAAAGCCAGGTTTCTGACATTGAATTCTCTTCCATGATTAGGCTTAAATAAAAACTTTTTATTCCAAAGATGTTGCAACTATGTCCAATACATGAATAGTTATTTTTTTTCTAAGTCTGTAAAATCAGCTAAATTGCAGCTTGTTTATAAAATTGCAGCTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAAGTTGGCAGTAGAGATGAGATTCAAGATTGCTGGATTGTAATAGTTGTAGATGCAA</genome_strand>
        <mrna_strand>GAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAG.............................................................................AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAG...........................................................................................................................................................................................................................CATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGAAGC-AATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAAGTTGGCAGTAGAGATGAGATTC-AGATTGCTGGATTGTAATAGTTGTAGATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258501" ref_strand="+" ref_description="SGN-E258501 [cLEG-47-E9]">
      <seq>gaaatagtagccaagttgcagaaacagttcatggacttcatttcagctttgtaccgtgagagattcttggatgatcagtttcttcagcttcagaatttgcaagatgagagcaacccagactttgttcgtgaagtagtttcacttttctttgtagattcagaaaaccttatcaacaatctgacagcagctctgtgagaaataaactctttttattgtttacctttaacagaaatattggatcattagtttattatttggtcaattgtagtcaacaacaggttgtagattttaagcaagttgattcccatgtccaccagttcaagggtagcagttccagcataggtgcacaaagagtaaagaatgcttgtgtggcttttaaaaccttctgcgaagggaagaacattgaagggtgtgtgcaatgtctgcagcaggtgaaacatgaatattttcttgtgaagaacaaacttgaaaccttgatgatgctggagaagcaaatcttggcggctggtggtaggattcctgacctgtcatagctaggtgctaatgatttgaagtccacatcctgagagaaagatagtagagagaaaagttggcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41916" stop="38013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41616" g_stop="41557" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41556" i_stop="41480" i_length="77">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41479" g_stop="41203" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="337" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41202" i_stop="40984" i_length="219">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40983" g_stop="40912" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="409" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40911" i_stop="39042" i_length="1870">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39041" g_stop="38969" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="482" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38968" i_stop="38428" i_length="541">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38427" g_stop="38313" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="597" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E258501" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41616" e_stop="41557"/>
          <exon e_start="41479" e_stop="41203"/>
          <exon e_start="40983" e_stop="40912"/>
          <exon e_start="39041" e_stop="38969"/>
          <exon e_start="38427" e_stop="38313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAGGTGGGTTGGTTTTCTTTTTTCTTTTTACTATATTAGGGAATTTTTCTGATATGAGTTTTCTTTTGTCTTTTGAAAAGAGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAGGTATCCAATTTTCCTTTTCTGCCATACATTTTTAGGTTTTTGTCATTGACTAAACTACTTTAATTGATGCTTGAAGTTGTATCTTTTTGGTAGACAAGTGATACATCCTGAGTGAATTTTATTGTGATCAAAGATTTAGCCGAATTTAGGTTATTGAATGGAAGTCTTTTAGGAGTTAGTAGTATCCCCATTAATCAGAATCTCTGTTATATTTTGCAGCATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGGGTGGGTATAGCTTGATTCTTTTACAATTTTTGCCTTTATCTATCTATCTATCTATTTGTATTATAAGGGTTTGGGTTTTTAGAAGATTTACATAAAAAGATTTGACTTTGTAGACATTAAGAAGACATGTTGGAAATTTTGTTTTCTACCATGTAAATCATAAGTCATTGGTTTTTTTTTTGCGTATAGTGATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATCCAAGGGTGTGTCCTTCTGGTCAATGAAGTGGGCTAAGAACCACGAGATCTCGGGTTAAAATCCCAGTAGAGACAAAAACACTAGGTGTTCTCTTCCCACCCTAGACTTGAGAACCATAAGGTCTCGAGTGGCAGGCATCCCGTGGAATTAGTCGAGGAACACGCAAGTTGGTCTGGACACAAGATTATAAAAAAAAAATTAAGATTTACCTATGATCATGTGGTATATTCTTGGTCGCACACAAAATACATCTATAGGGCATTTTCTAAATCTGACATTATTTGATGCTAATATGGCTTTTCATTTACGAAGGTACATGTCTAGAACCTTCCAATTTATCTTTTTTCAGACATTTCTACTACATTATAATTGCAGTACCAATGTTGTCGTGTCTTGGTGGCCCCACCTCAAGCATCCTGATCTCTGTGTGTTTCTGGCTCTCTTTTGGGACATTATTTACATAGTTCCAGTAACTAAACAAAACGAATCACGCCTTCTTGGAGTTCTATGTATACAGTCACTGCAGAATAAAGAACAGAGGGATTTGAGCAGAGATGTTTCTGGTTGGTAAAAAAATAAAATTGGAGTGTAACATGCCACTCCATTCTTGTTCAACTCTTATGCTTGAAATTATCAGATCACAACAATAGACCAGCTTCACTACTGAGTCTCTAAATCTTCGCAAAATTATTGTTGCCCCTTAGGAGGACACCAGTATGAACTGCCTCTGTGCAGAGATCTTTTCAAGTACCATCTGCTCTTTTTTCTGCCTCAAATCTGCTTAAGTCTAAGTATTCTCTTTCTTCACAGTTTGAACATGAAAGGCCAATTTAATTGAAGCATCTATTAGTAAAATCTGGTTCATTTTGTTAAAGACCTCATTTAAGAGCTAGAAAAGGTATGCCCTAACACTTAAAGATGACGTGGATTACCATACCTGCTGGCATATGGTGGAGTATTTGGAAGGATATGAATAGAAGACGTTTTGGACACAAGACCTCAATCTTGGTGGAGTATCTACACATACCGTATTTCTCCAAAAAAATAAAATAAAAAAATCTAGCATTTCTAGTTATGTTATAGTATTATATTGGATGAACTATTGTTCTTTTATACTTGCCATTCTCAGCCAAAAAAAAAAGTAAATTGGAGAAACTATTGAATATACATGTATCAACTGTTGTGTAAATACATACGGAAGTAACATCAGTCAGCTAGTAAGACCATATAGCTGTGGCGTGGGTATCTAGAATAGTAACAGGTATTACTTTTTGATTACTTTCCTCGTAGGAACTTTCAAACTCTAATTATCATTTTTGATTACTTTTATGTTATCTCAAAAAAGCTAAAGCCTTTAATTTATTAATTGCTTTCAAACATGGAATATATAATCGGAAAATGGTAGTAAGAAACAACGAGACCCATATTGTAACCTTGGTTAATTTGGGATTCAAGCCTTGATGCTGTCTTGTTATTGTGTGGTGCATCTAAGTTTGATTTTTTGAGGCTCTACTCTTATTTATCTTTGTAAATTATTTTTATTTCCTTGTGCAGGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATGGTAAGTACTCTTCTACAAATGTTTGGGATTTCCAGGTCTCAGTACCATACTGTTGAAGAAAATGCTATTTAGTACATGATGCTTAAATTTCAGTGGGTCAAGTGTGGGGATTCTGATGCTCTGCCAATTTAGATCTTTCACAAATTATTTCGCGATAAAGTTTGACAGGGTACGTGTTATAGGTCATACTATTTGACAAGCAATACCTAGAGGCTGGTGTTTGATAATGAAACAGCCCTCTCAGCATCCCCTCATTTGATTTAAACTTTTCCTCTCAAGTAATGTTGGAGTCCATGATTTCCTAGCAAGAAAATTTTTCATGTTTTCTGCTTATAACTAGTTTAAAAAATTTTAAGTTTTCTTGTCACTTCCTTTTACCTGTTTAAAGCCAGGTTTCTGACATTGAATTCTCTTCCATGATTAGGCTTAAATAAAAACTTTTTATTCCAAAGATGTTGCAACTATGTCCAATACATGAATAGTTATTTTTTTTCTAAGTCTGTAAAATCAGCTAAATTGCAGCTTGTTTATAAAATTGCAGCTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAAGTTGGCAGT</genome_strand>
        <mrna_strand>GAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAG.............................................................................AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAG...........................................................................................................................................................................................................................CATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAAGTTGGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285016" ref_strand="+" ref_description="SGN-E285016 [cLER-19-B13]">
      <seq>gaaatctgtagatctgcaataaagtttgagtttttgagtcttctcccccacatcaaattcatggaaatagtagccaagttgcagaaacagttcatggacttcatttcagctttgtaccgtgagagattcttggatgatcagtttcttcagcttcagaatttgcaagatgagagcaacccagactttgttcgtgaagtagtttcacttttctttgtagattcagaaaaccttatcaacaatctgacagcagctcttcaacaacaggttgtagattttaagcaagttgattcccatgtccaccagttcaagggtagcagttccagcataggtgcacaaagagtaaagaatgcttgtgtggcttttaaaaccttctgcgaagggaagaacattgaagggtgtgtgcaatgtctgcagcaggtgaaacatgaatattttcttgtgaagaacaaacttgaaaccttgatgatgctggagaagcaaatcttggcggctggtggtaggattcctgacctgtcatagctaggtgctaatgatttgaagtccacatcctgagagaaagattgttgagagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41979" stop="38022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41679" g_stop="41557" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41556" i_stop="41480" i_length="77">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41479" g_stop="41349" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="254" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41348" i_stop="41272" i_length="77">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41271" g_stop="41203" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="323" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41202" i_stop="40984" i_length="219">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40983" g_stop="40912" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="395" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40911" i_stop="39042" i_length="1870">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39041" g_stop="38969" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="468" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38968" i_stop="38428" i_length="541">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38427" g_stop="38322" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="574" r_length="106" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E285016" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41679" e_stop="41557"/>
          <exon e_start="41479" e_stop="41349"/>
          <exon e_start="41271" e_stop="41203"/>
          <exon e_start="40983" e_stop="40912"/>
          <exon e_start="39041" e_stop="38969"/>
          <exon e_start="38427" e_stop="38322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAGGTGGGTTGGTTTTCTTTTTTCTTTTTACTATATTAGGGAATTTTTCTGATATGAGTTTTCTTTTGTCTTTTGAAAAGAGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAGGTATCCAATTTTCCTTTTCTGCCATACATTTTTAGGTTTTTGTCATTGACTAAACTACTTTAATTGATGCTTGAAGTTGTATCTTTTTGGTAGACAAGTGATACATCCTGAGTGAATTTTATTGTGATCAAAGATTTAGCCGAATTTAGGTTATTGAATGGAAGTCTTTTAGGAGTTAGTAGTATCCCCATTAATCAGAATCTCTGTTATATTTTGCAGCATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGGGTGGGTATAGCTTGATTCTTTTACAATTTTTGCCTTTATCTATCTATCTATCTATTTGTATTATAAGGGTTTGGGTTTTTAGAAGATTTACATAAAAAGATTTGACTTTGTAGACATTAAGAAGACATGTTGGAAATTTTGTTTTCTACCATGTAAATCATAAGTCATTGGTTTTTTTTTTGCGTATAGTGATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATCCAAGGGTGTGTCCTTCTGGTCAATGAAGTGGGCTAAGAACCACGAGATCTCGGGTTAAAATCCCAGTAGAGACAAAAACACTAGGTGTTCTCTTCCCACCCTAGACTTGAGAACCATAAGGTCTCGAGTGGCAGGCATCCCGTGGAATTAGTCGAGGAACACGCAAGTTGGTCTGGACACAAGATTATAAAAAAAAAATTAAGATTTACCTATGATCATGTGGTATATTCTTGGTCGCACACAAAATACATCTATAGGGCATTTTCTAAATCTGACATTATTTGATGCTAATATGGCTTTTCATTTACGAAGGTACATGTCTAGAACCTTCCAATTTATCTTTTTTCAGACATTTCTACTACATTATAATTGCAGTACCAATGTTGTCGTGTCTTGGTGGCCCCACCTCAAGCATCCTGATCTCTGTGTGTTTCTGGCTCTCTTTTGGGACATTATTTACATAGTTCCAGTAACTAAACAAAACGAATCACGCCTTCTTGGAGTTCTATGTATACAGTCACTGCAGAATAAAGAACAGAGGGATTTGAGCAGAGATGTTTCTGGTTGGTAAAAAAATAAAATTGGAGTGTAACATGCCACTCCATTCTTGTTCAACTCTTATGCTTGAAATTATCAGATCACAACAATAGACCAGCTTCACTACTGAGTCTCTAAATCTTCGCAAAATTATTGTTGCCCCTTAGGAGGACACCAGTATGAACTGCCTCTGTGCAGAGATCTTTTCAAGTACCATCTGCTCTTTTTTCTGCCTCAAATCTGCTTAAGTCTAAGTATTCTCTTTCTTCACAGTTTGAACATGAAAGGCCAATTTAATTGAAGCATCTATTAGTAAAATCTGGTTCATTTTGTTAAAGACCTCATTTAAGAGCTAGAAAAGGTATGCCCTAACACTTAAAGATGACGTGGATTACCATACCTGCTGGCATATGGTGGAGTATTTGGAAGGATATGAATAGAAGACGTTTTGGACACAAGACCTCAATCTTGGTGGAGTATCTACACATACCGTATTTCTCCAAAAAAATAAAATAAAAAAATCTAGCATTTCTAGTTATGTTATAGTATTATATTGGATGAACTATTGTTCTTTTATACTTGCCATTCTCAGCCAAAAAAAAAAGTAAATTGGAGAAACTATTGAATATACATGTATCAACTGTTGTGTAAATACATACGGAAGTAACATCAGTCAGCTAGTAAGACCATATAGCTGTGGCGTGGGTATCTAGAATAGTAACAGGTATTACTTTTTGATTACTTTCCTCGTAGGAACTTTCAAACTCTAATTATCATTTTTGATTACTTTTATGTTATCTCAAAAAAGCTAAAGCCTTTAATTTATTAATTGCTTTCAAACATGGAATATATAATCGGAAAATGGTAGTAAGAAACAACGAGACCCATATTGTAACCTTGGTTAATTTGGGATTCAAGCCTTGATGCTGTCTTGTTATTGTGTGGTGCATCTAAGTTTGATTTTTTGAGGCTCTACTCTTATTTATCTTTGTAAATTATTTTTATTTCCTTGTGCAGGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATGGTAAGTACTCTTCTACAAATGTTTGGGATTTCCAGGTCTCAGTACCATACTGTTGAAGAAAATGCTATTTAGTACATGATGCTTAAATTTCAGTGGGTCAAGTGTGGGGATTCTGATGCTCTGCCAATTTAGATCTTTCACAAATTATTTCGCGATAAAGTTTGACAGGGTACGTGTTATAGGTCATACTATTTGACAAGCAATACCTAGAGGCTGGTGTTTGATAATGAAACAGCCCTCTCAGCATCCCCTCATTTGATTTAAACTTTTCCTCTCAAGTAATGTTGGAGTCCATGATTTCCTAGCAAGAAAATTTTTCATGTTTTCTGCTTATAACTAGTTTAAAAAATTTTAAGTTTTCTTGTCACTTCCTTTTACCTGTTTAAAGCCAGGTTTCTGACATTGAATTCTCTTCCATGATTAGGCTTAAATAAAAACTTTTTATTCCAAAGATGTTGCAACTATGTCCAATACATGAATAGTTATTTTTTTTCTAAGTCTGTAAAATCAGCTAAATTGCAGCTTGTTTATAAAATTGCAGCTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAA</genome_strand>
        <mrna_strand>GAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAG.............................................................................AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCT.............................................................................TCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAG...........................................................................................................................................................................................................................CATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATTGTTGAGAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256596" ref_strand="+" ref_description="SGN-E256596 [cLEG-38-J15]">
      <seq>gaaatagtagccaagttgcagaaacagttcatggacttcatttcagctttgtaccgtgagagattcttggatgatcagtttcttcagcttcagaatttgcaagatgagagcaacccagactttgttcgtgaagtagtttcacttttctttgtagattcagaaaaccttatcaacaatctgacagcagctctgtgagaaataaactctttttattgtttacctttaacagaaatattggatcattagtttattatttggtcaattgtagtcaacaacaggttgtagattttaagcaagttgattcccatgtccaccagttcaagggtagcagttccagcataggtgcacaaagagtaaagaatgcttgtgtggcttttaaaaccttctgcgaagggaagaacattgaagggtgtgtgcaatgtctgcagcaggtgaaacatgaatattttcttgtgaagaacaaacttgaaaccttgatgatgctggagaagcaaatcttggcggctggtggtaggattcctgacctgtcatagctaggtgctaatgatttgaagtccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41916" stop="38050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41616" g_stop="41557" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41556" i_stop="41480" i_length="77">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41479" g_stop="41203" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="337" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41202" i_stop="40984" i_length="219">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40983" g_stop="40912" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="409" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40911" i_stop="39042" i_length="1870">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39041" g_stop="38969" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="482" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38968" i_stop="38428" i_length="541">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38427" g_stop="38350" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="560" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E256596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41616" e_stop="41557"/>
          <exon e_start="41479" e_stop="41203"/>
          <exon e_start="40983" e_stop="40912"/>
          <exon e_start="39041" e_stop="38969"/>
          <exon e_start="38427" e_stop="38350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAGGTGGGTTGGTTTTCTTTTTTCTTTTTACTATATTAGGGAATTTTTCTGATATGAGTTTTCTTTTGTCTTTTGAAAAGAGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAGGTATCCAATTTTCCTTTTCTGCCATACATTTTTAGGTTTTTGTCATTGACTAAACTACTTTAATTGATGCTTGAAGTTGTATCTTTTTGGTAGACAAGTGATACATCCTGAGTGAATTTTATTGTGATCAAAGATTTAGCCGAATTTAGGTTATTGAATGGAAGTCTTTTAGGAGTTAGTAGTATCCCCATTAATCAGAATCTCTGTTATATTTTGCAGCATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGGGTGGGTATAGCTTGATTCTTTTACAATTTTTGCCTTTATCTATCTATCTATCTATTTGTATTATAAGGGTTTGGGTTTTTAGAAGATTTACATAAAAAGATTTGACTTTGTAGACATTAAGAAGACATGTTGGAAATTTTGTTTTCTACCATGTAAATCATAAGTCATTGGTTTTTTTTTTGCGTATAGTGATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATCCAAGGGTGTGTCCTTCTGGTCAATGAAGTGGGCTAAGAACCACGAGATCTCGGGTTAAAATCCCAGTAGAGACAAAAACACTAGGTGTTCTCTTCCCACCCTAGACTTGAGAACCATAAGGTCTCGAGTGGCAGGCATCCCGTGGAATTAGTCGAGGAACACGCAAGTTGGTCTGGACACAAGATTATAAAAAAAAAATTAAGATTTACCTATGATCATGTGGTATATTCTTGGTCGCACACAAAATACATCTATAGGGCATTTTCTAAATCTGACATTATTTGATGCTAATATGGCTTTTCATTTACGAAGGTACATGTCTAGAACCTTCCAATTTATCTTTTTTCAGACATTTCTACTACATTATAATTGCAGTACCAATGTTGTCGTGTCTTGGTGGCCCCACCTCAAGCATCCTGATCTCTGTGTGTTTCTGGCTCTCTTTTGGGACATTATTTACATAGTTCCAGTAACTAAACAAAACGAATCACGCCTTCTTGGAGTTCTATGTATACAGTCACTGCAGAATAAAGAACAGAGGGATTTGAGCAGAGATGTTTCTGGTTGGTAAAAAAATAAAATTGGAGTGTAACATGCCACTCCATTCTTGTTCAACTCTTATGCTTGAAATTATCAGATCACAACAATAGACCAGCTTCACTACTGAGTCTCTAAATCTTCGCAAAATTATTGTTGCCCCTTAGGAGGACACCAGTATGAACTGCCTCTGTGCAGAGATCTTTTCAAGTACCATCTGCTCTTTTTTCTGCCTCAAATCTGCTTAAGTCTAAGTATTCTCTTTCTTCACAGTTTGAACATGAAAGGCCAATTTAATTGAAGCATCTATTAGTAAAATCTGGTTCATTTTGTTAAAGACCTCATTTAAGAGCTAGAAAAGGTATGCCCTAACACTTAAAGATGACGTGGATTACCATACCTGCTGGCATATGGTGGAGTATTTGGAAGGATATGAATAGAAGACGTTTTGGACACAAGACCTCAATCTTGGTGGAGTATCTACACATACCGTATTTCTCCAAAAAAATAAAATAAAAAAATCTAGCATTTCTAGTTATGTTATAGTATTATATTGGATGAACTATTGTTCTTTTATACTTGCCATTCTCAGCCAAAAAAAAAAGTAAATTGGAGAAACTATTGAATATACATGTATCAACTGTTGTGTAAATACATACGGAAGTAACATCAGTCAGCTAGTAAGACCATATAGCTGTGGCGTGGGTATCTAGAATAGTAACAGGTATTACTTTTTGATTACTTTCCTCGTAGGAACTTTCAAACTCTAATTATCATTTTTGATTACTTTTATGTTATCTCAAAAAAGCTAAAGCCTTTAATTTATTAATTGCTTTCAAACATGGAATATATAATCGGAAAATGGTAGTAAGAAACAACGAGACCCATATTGTAACCTTGGTTAATTTGGGATTCAAGCCTTGATGCTGTCTTGTTATTGTGTGGTGCATCTAAGTTTGATTTTTTGAGGCTCTACTCTTATTTATCTTTGTAAATTATTTTTATTTCCTTGTGCAGGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATGGTAAGTACTCTTCTACAAATGTTTGGGATTTCCAGGTCTCAGTACCATACTGTTGAAGAAAATGCTATTTAGTACATGATGCTTAAATTTCAGTGGGTCAAGTGTGGGGATTCTGATGCTCTGCCAATTTAGATCTTTCACAAATTATTTCGCGATAAAGTTTGACAGGGTACGTGTTATAGGTCATACTATTTGACAAGCAATACCTAGAGGCTGGTGTTTGATAATGAAACAGCCCTCTCAGCATCCCCTCATTTGATTTAAACTTTTCCTCTCAAGTAATGTTGGAGTCCATGATTTCCTAGCAAGAAAATTTTTCATGTTTTCTGCTTATAACTAGTTTAAAAAATTTTAAGTTTTCTTGTCACTTCCTTTTACCTGTTTAAAGCCAGGTTTCTGACATTGAATTCTCTTCCATGATTAGGCTTAAATAAAAACTTTTTATTCCAAAGATGTTGCAACTATGTCCAATACATGAATAGTTATTTTTTTTCTAAGTCTGTAAAATCAGCTAAATTGCAGCTTGTTTATAAAATTGCAGCTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACA</genome_strand>
        <mrna_strand>GAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAG.............................................................................AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAG...........................................................................................................................................................................................................................CATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257510" ref_strand="+" ref_description="SGN-E257510 [cLEG-45-E9]">
      <seq>gaaatagtagccaagttgcagaaacagttcatggacttcatttcagctttgtaccgtgagagattcttggatgatcagtttcttcagcttcagaatttgcaagatgagagcaacccagactttgttcgtgaagtagtttcacttttctttgtagattcagaaaaccttatcaacaatctgacagcagctctgtgagaaataaactctttttattgtttacctttaacagaaatattggatcattagtttattatttggtcaattgtagtcaacaacaggttgtagattttaagcaagttgattcccatgtccaccagttcaagggtagcagttccagcataggtgcacaaagagtaaagaatgcttgtgtggcttttaaaaccttctgcgaagggaagaacattgaagggtgtgtgcaatgtctgcagcaggtgaaacatgaatattttcttgtgaagaacaaacttgaaaccttgatgatgctggagaagcaaatcttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41916" stop="38108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41616" g_stop="41557" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41556" i_stop="41480" i_length="77">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41479" g_stop="41203" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="337" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41202" i_stop="40984" i_length="219">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40983" g_stop="40912" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="409" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40911" i_stop="39042" i_length="1870">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39041" g_stop="38969" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="482" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38968" i_stop="38428" i_length="541">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38427" g_stop="38408" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="502" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E257510" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41616" e_stop="41557"/>
          <exon e_start="41479" e_stop="41203"/>
          <exon e_start="40983" e_stop="40912"/>
          <exon e_start="39041" e_stop="38969"/>
          <exon e_start="38427" e_stop="38408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAGGTGGGTTGGTTTTCTTTTTTCTTTTTACTATATTAGGGAATTTTTCTGATATGAGTTTTCTTTTGTCTTTTGAAAAGAGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAGGTATCCAATTTTCCTTTTCTGCCATACATTTTTAGGTTTTTGTCATTGACTAAACTACTTTAATTGATGCTTGAAGTTGTATCTTTTTGGTAGACAAGTGATACATCCTGAGTGAATTTTATTGTGATCAAAGATTTAGCCGAATTTAGGTTATTGAATGGAAGTCTTTTAGGAGTTAGTAGTATCCCCATTAATCAGAATCTCTGTTATATTTTGCAGCATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGGGTGGGTATAGCTTGATTCTTTTACAATTTTTGCCTTTATCTATCTATCTATCTATTTGTATTATAAGGGTTTGGGTTTTTAGAAGATTTACATAAAAAGATTTGACTTTGTAGACATTAAGAAGACATGTTGGAAATTTTGTTTTCTACCATGTAAATCATAAGTCATTGGTTTTTTTTTTGCGTATAGTGATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATCCAAGGGTGTGTCCTTCTGGTCAATGAAGTGGGCTAAGAACCACGAGATCTCGGGTTAAAATCCCAGTAGAGACAAAAACACTAGGTGTTCTCTTCCCACCCTAGACTTGAGAACCATAAGGTCTCGAGTGGCAGGCATCCCGTGGAATTAGTCGAGGAACACGCAAGTTGGTCTGGACACAAGATTATAAAAAAAAAATTAAGATTTACCTATGATCATGTGGTATATTCTTGGTCGCACACAAAATACATCTATAGGGCATTTTCTAAATCTGACATTATTTGATGCTAATATGGCTTTTCATTTACGAAGGTACATGTCTAGAACCTTCCAATTTATCTTTTTTCAGACATTTCTACTACATTATAATTGCAGTACCAATGTTGTCGTGTCTTGGTGGCCCCACCTCAAGCATCCTGATCTCTGTGTGTTTCTGGCTCTCTTTTGGGACATTATTTACATAGTTCCAGTAACTAAACAAAACGAATCACGCCTTCTTGGAGTTCTATGTATACAGTCACTGCAGAATAAAGAACAGAGGGATTTGAGCAGAGATGTTTCTGGTTGGTAAAAAAATAAAATTGGAGTGTAACATGCCACTCCATTCTTGTTCAACTCTTATGCTTGAAATTATCAGATCACAACAATAGACCAGCTTCACTACTGAGTCTCTAAATCTTCGCAAAATTATTGTTGCCCCTTAGGAGGACACCAGTATGAACTGCCTCTGTGCAGAGATCTTTTCAAGTACCATCTGCTCTTTTTTCTGCCTCAAATCTGCTTAAGTCTAAGTATTCTCTTTCTTCACAGTTTGAACATGAAAGGCCAATTTAATTGAAGCATCTATTAGTAAAATCTGGTTCATTTTGTTAAAGACCTCATTTAAGAGCTAGAAAAGGTATGCCCTAACACTTAAAGATGACGTGGATTACCATACCTGCTGGCATATGGTGGAGTATTTGGAAGGATATGAATAGAAGACGTTTTGGACACAAGACCTCAATCTTGGTGGAGTATCTACACATACCGTATTTCTCCAAAAAAATAAAATAAAAAAATCTAGCATTTCTAGTTATGTTATAGTATTATATTGGATGAACTATTGTTCTTTTATACTTGCCATTCTCAGCCAAAAAAAAAAGTAAATTGGAGAAACTATTGAATATACATGTATCAACTGTTGTGTAAATACATACGGAAGTAACATCAGTCAGCTAGTAAGACCATATAGCTGTGGCGTGGGTATCTAGAATAGTAACAGGTATTACTTTTTGATTACTTTCCTCGTAGGAACTTTCAAACTCTAATTATCATTTTTGATTACTTTTATGTTATCTCAAAAAAGCTAAAGCCTTTAATTTATTAATTGCTTTCAAACATGGAATATATAATCGGAAAATGGTAGTAAGAAACAACGAGACCCATATTGTAACCTTGGTTAATTTGGGATTCAAGCCTTGATGCTGTCTTGTTATTGTGTGGTGCATCTAAGTTTGATTTTTTGAGGCTCTACTCTTATTTATCTTTGTAAATTATTTTTATTTCCTTGTGCAGGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATGGTAAGTACTCTTCTACAAATGTTTGGGATTTCCAGGTCTCAGTACCATACTGTTGAAGAAAATGCTATTTAGTACATGATGCTTAAATTTCAGTGGGTCAAGTGTGGGGATTCTGATGCTCTGCCAATTTAGATCTTTCACAAATTATTTCGCGATAAAGTTTGACAGGGTACGTGTTATAGGTCATACTATTTGACAAGCAATACCTAGAGGCTGGTGTTTGATAATGAAACAGCCCTCTCAGCATCCCCTCATTTGATTTAAACTTTTCCTCTCAAGTAATGTTGGAGTCCATGATTTCCTAGCAAGAAAATTTTTCATGTTTTCTGCTTATAACTAGTTTAAAAAATTTTAAGTTTTCTTGTCACTTCCTTTTACCTGTTTAAAGCCAGGTTTCTGACATTGAATTCTCTTCCATGATTAGGCTTAAATAAAAACTTTTTATTCCAAAGATGTTGCAACTATGTCCAATACATGAATAGTTATTTTTTTTCTAAGTCTGTAAAATCAGCTAAATTGCAGCTTGTTTATAAAATTGCAGCTGGAGAAGCAAATCTTGGC</genome_strand>
        <mrna_strand>GAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAG.............................................................................AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAG...........................................................................................................................................................................................................................CATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGAAGCAAATCTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207565" ref_strand="+" ref_description="SGN-E207565 [cLEC-32-E3]">
      <seq>gagaactagtctcgagtttttgagtcttctcccccacatcaaattcatggaaatagtagccaagttgcagaaacagttcatggacttcatttcagctttgtaccgtgagagattcttggatgatcagtttcttcagcttcagaatttgcaagatgagagcaacccagactttgttcgtgaagtagtttcacttttctttgtagattcagaaaaccttatcaacaatctgacagcagctcttcaacaacaggttgtagattttaagcaagttgattcccatgtccaccagttcaagggtagcagttccagcataggtgcacaaagagtaaagaatgcttgtgtggcttttaaaaccttctgcgaagggaagaacattgaagggtgtgtgcaatgtctgcagcaggtgaaacatgaatattttcttgtgaagaacaaacttgaaaccttgatgatgctggagaagcaaatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41957" stop="38111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41664" g_stop="41557" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41556" i_stop="41480" i_length="77">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41479" g_stop="41349" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="240" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41348" i_stop="41272" i_length="77">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41271" g_stop="41203" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="309" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41202" i_stop="40984" i_length="219">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40983" g_stop="40912" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="381" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40911" i_stop="39042" i_length="1870">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39041" g_stop="38969" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="454" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38968" i_stop="38428" i_length="541">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38427" g_stop="38411" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="471" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E207565" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41664" e_stop="41557"/>
          <exon e_start="41479" e_stop="41349"/>
          <exon e_start="41271" e_stop="41203"/>
          <exon e_start="40983" e_stop="40912"/>
          <exon e_start="39041" e_stop="38969"/>
          <exon e_start="38427" e_stop="38411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATAAAGT-TTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAGGTGGGTTGGTTTTCTTTTTTCTTTTTACTATATTAGGGAATTTTTCTGATATGAGTTTTCTTTTGTCTTTTGAAAAGAGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAGGTATCCAATTTTCCTTTTCTGCCATACATTTTTAGGTTTTTGTCATTGACTAAACTACTTTAATTGATGCTTGAAGTTGTATCTTTTTGGTAGACAAGTGATACATCCTGAGTGAATTTTATTGTGATCAAAGATTTAGCCGAATTTAGGTTATTGAATGGAAGTCTTTTAGGAGTTAGTAGTATCCCCATTAATCAGAATCTCTGTTATATTTTGCAGCATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGGGTGGGTATAGCTTGATTCTTTTACAATTTTTGCCTTTATCTATCTATCTATCTATTTGTATTATAAGGGTTTGGGTTTTTAGAAGATTTACATAAAAAGATTTGACTTTGTAGACATTAAGAAGACATGTTGGAAATTTTGTTTTCTACCATGTAAATCATAAGTCATTGGTTTTTTTTTTGCGTATAGTGATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATCCAAGGGTGTGTCCTTCTGGTCAATGAAGTGGGCTAAGAACCACGAGATCTCGGGTTAAAATCCCAGTAGAGACAAAAACACTAGGTGTTCTCTTCCCACCCTAGACTTGAGAACCATAAGGTCTCGAGTGGCAGGCATCCCGTGGAATTAGTCGAGGAACACGCAAGTTGGTCTGGACACAAGATTATAAAAAAAAAATTAAGATTTACCTATGATCATGTGGTATATTCTTGGTCGCACACAAAATACATCTATAGGGCATTTTCTAAATCTGACATTATTTGATGCTAATATGGCTTTTCATTTACGAAGGTACATGTCTAGAACCTTCCAATTTATCTTTTTTCAGACATTTCTACTACATTATAATTGCAGTACCAATGTTGTCGTGTCTTGGTGGCCCCACCTCAAGCATCCTGATCTCTGTGTGTTTCTGGCTCTCTTTTGGGACATTATTTACATAGTTCCAGTAACTAAACAAAACGAATCACGCCTTCTTGGAGTTCTATGTATACAGTCACTGCAGAATAAAGAACAGAGGGATTTGAGCAGAGATGTTTCTGGTTGGTAAAAAAATAAAATTGGAGTGTAACATGCCACTCCATTCTTGTTCAACTCTTATGCTTGAAATTATCAGATCACAACAATAGACCAGCTTCACTACTGAGTCTCTAAATCTTCGCAAAATTATTGTTGCCCCTTAGGAGGACACCAGTATGAACTGCCTCTGTGCAGAGATCTTTTCAAGTACCATCTGCTCTTTTTTCTGCCTCAAATCTGCTTAAGTCTAAGTATTCTCTTTCTTCACAGTTTGAACATGAAAGGCCAATTTAATTGAAGCATCTATTAGTAAAATCTGGTTCATTTTGTTAAAGACCTCATTTAAGAGCTAGAAAAGGTATGCCCTAACACTTAAAGATGACGTGGATTACCATACCTGCTGGCATATGGTGGAGTATTTGGAAGGATATGAATAGAAGACGTTTTGGACACAAGACCTCAATCTTGGTGGAGTATCTACACATACCGTATTTCTCCAAAAAAATAAAATAAAAAAATCTAGCATTTCTAGTTATGTTATAGTATTATATTGGATGAACTATTGTTCTTTTATACTTGCCATTCTCAGCCAAAAAAAAAAGTAAATTGGAGAAACTATTGAATATACATGTATCAACTGTTGTGTAAATACATACGGAAGTAACATCAGTCAGCTAGTAAGACCATATAGCTGTGGCGTGGGTATCTAGAATAGTAACAGGTATTACTTTTTGATTACTTTCCTCGTAGGAACTTTCAAACTCTAATTATCATTTTTGATTACTTTTATGTTATCTCAAAAAAGCTAAAGCCTTTAATTTATTAATTGCTTTCAAACATGGAATATATAATCGGAAAATGGTAGTAAGAAACAACGAGACCCATATTGTAACCTTGGTTAATTTGGGATTCAAGCCTTGATGCTGTCTTGTTATTGTGTGGTGCATCTAAGTTTGATTTTTTGAGGCTCTACTCTTATTTATCTTTGTAAATTATTTTTATTTCCTTGTGCAGGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATGGTAAGTACTCTTCTACAAATGTTTGGGATTTCCAGGTCTCAGTACCATACTGTTGAAGAAAATGCTATTTAGTACATGATGCTTAAATTTCAGTGGGTCAAGTGTGGGGATTCTGATGCTCTGCCAATTTAGATCTTTCACAAATTATTTCGCGATAAAGTTTGACAGGGTACGTGTTATAGGTCATACTATTTGACAAGCAATACCTAGAGGCTGGTGTTTGATAATGAAACAGCCCTCTCAGCATCCCCTCATTTGATTTAAACTTTTCCTCTCAAGTAATGTTGGAGTCCATGATTTCCTAGCAAGAAAATTTTTCATGTTTTCTGCTTATAACTAGTTTAAAAAATTTTAAGTTTTCTTGTCACTTCCTTTTACCTGTTTAAAGCCAGGTTTCTGACATTGAATTCTCTTCCATGATTAGGCTTAAATAAAAACTTTTTATTCCAAAGATGTTGCAACTATGTCCAATACATGAATAGTTATTTTTTTTCTAAGTCTGTAAAATCAGCTAAATTGCAGCTTGTTTATAAAATTGCAGCTGGAGAAGCAAATCTT</genome_strand>
        <mrna_strand>GAGAACTAGTCTCGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAG.............................................................................AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCT.............................................................................TCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAG...........................................................................................................................................................................................................................CATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGAAGCAAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551182" ref_strand="+" ref_description="SGN-E551182 [TUS-55-K6]">
      <seq>aaagtcaattcgatgagcattgatttggtacctattaaaattagtatatgaaatctgtagatctgcaataaagtttgagtttttgagtcttctcccccacatcaaattcatggaaatagtagccaagttgcagaaacagttcatggacttcatttcagctttgtaccgtgagagattcttggatgatcagtttcttcagcttcagaatttgcaagatgagagcaacccagactttgttcgtgaagtagtttcacttttctttgtagattcagaaaaccttatcaacaatctgacagcagctctgtgagaaataaactctttttattgtttacctttaacagaaatattggatcattagtttattatttggtcaattgtagtcaacaacaggttgtagattttaagcaagttgattcccatgtccaccagttcaagggtagcagttccagcataggtgcacaaagagtaaagaatgcttgtgtggcttttaaaaccttctgcgaagggaagaacattgaagggtgtgtgcaatgtctgcagcaggtgaaacatgaatattttcttgtgaagaaacaacttgaaccttgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42028" stop="38669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41728" g_stop="41557" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41556" i_stop="41480" i_length="77">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41479" g_stop="41203" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="449" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41202" i_stop="40984" i_length="219">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40983" g_stop="40912" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="521" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40911" i_stop="39042" i_length="1870">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39041" g_stop="38969" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="593" r_length="72" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E551182" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41728" e_stop="41557"/>
          <exon e_start="41479" e_stop="41203"/>
          <exon e_start="40983" e_stop="40912"/>
          <exon e_start="39041" e_stop="38969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTCAATTCGATGAGCATTGATTTGGTACCTATTAAAATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAGGTGGGTTGGTTTTCTTTTTTCTTTTTACTATATTAGGGAATTTTTCTGATATGAGTTTTCTTTTGTCTTTTGAAAAGAGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAGGTATCCAATTTTCCTTTTCTGCCATACATTTTTAGGTTTTTGTCATTGACTAAACTACTTTAATTGATGCTTGAAGTTGTATCTTTTTGGTAGACAAGTGATACATCCTGAGTGAATTTTATTGTGATCAAAGATTTAGCCGAATTTAGGTTATTGAATGGAAGTCTTTTAGGAGTTAGTAGTATCCCCATTAATCAGAATCTCTGTTATATTTTGCAGCATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGGGTGGGTATAGCTTGATTCTTTTACAATTTTTGCCTTTATCTATCTATCTATCTATTTGTATTATAAGGGTTTGGGTTTTTAGAAGATTTACATAAAAAGATTTGACTTTGTAGACATTAAGAAGACATGTTGGAAATTTTGTTTTCTACCATGTAAATCATAAGTCATTGGTTTTTTTTTTGCGTATAGTGATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATCCAAGGGTGTGTCCTTCTGGTCAATGAAGTGGGCTAAGAACCACGAGATCTCGGGTTAAAATCCCAGTAGAGACAAAAACACTAGGTGTTCTCTTCCCACCCTAGACTTGAGAACCATAAGGTCTCGAGTGGCAGGCATCCCGTGGAATTAGTCGAGGAACACGCAAGTTGGTCTGGACACAAGATTATAAAAAAAAAATTAAGATTTACCTATGATCATGTGGTATATTCTTGGTCGCACACAAAATACATCTATAGGGCATTTTCTAAATCTGACATTATTTGATGCTAATATGGCTTTTCATTTACGAAGGTACATGTCTAGAACCTTCCAATTTATCTTTTTTCAGACATTTCTACTACATTATAATTGCAGTACCAATGTTGTCGTGTCTTGGTGGCCCCACCTCAAGCATCCTGATCTCTGTGTGTTTCTGGCTCTCTTTTGGGACATTATTTACATAGTTCCAGTAACTAAACAAAACGAATCACGCCTTCTTGGAGTTCTATGTATACAGTCACTGCAGAATAAAGAACAGAGGGATTTGAGCAGAGATGTTTCTGGTTGGTAAAAAAATAAAATTGGAGTGTAACATGCCACTCCATTCTTGTTCAACTCTTATGCTTGAAATTATCAGATCACAACAATAGACCAGCTTCACTACTGAGTCTCTAAATCTTCGCAAAATTATTGTTGCCCCTTAGGAGGACACCAGTATGAACTGCCTCTGTGCAGAGATCTTTTCAAGTACCATCTGCTCTTTTTTCTGCCTCAAATCTGCTTAAGTCTAAGTATTCTCTTTCTTCACAGTTTGAACATGAAAGGCCAATTTAATTGAAGCATCTATTAGTAAAATCTGGTTCATTTTGTTAAAGACCTCATTTAAGAGCTAGAAAAGGTATGCCCTAACACTTAAAGATGACGTGGATTACCATACCTGCTGGCATATGGTGGAGTATTTGGAAGGATATGAATAGAAGACGTTTTGGACACAAGACCTCAATCTTGGTGGAGTATCTACACATACCGTATTTCTCCAAAAAAATAAAATAAAAAAATCTAGCATTTCTAGTTATGTTATAGTATTATATTGGATGAACTATTGTTCTTTTATACTTGCCATTCTCAGCCAAAAAAAAAAGTAAATTGGAGAAACTATTGAATATACATGTATCAACTGTTGTGTAAATACATACGGAAGTAACATCAGTCAGCTAGTAAGACCATATAGCTGTGGCGTGGGTATCTAGAATAGTAACAGGTATTACTTTTTGATTACTTTCCTCGTAGGAACTTTCAAACTCTAATTATCATTTTTGATTACTTTTATGTTATCTCAAAAAAGCTAAAGCCTTTAATTTATTAATTGCTTTCAAACATGGAATATATAATCGGAAAATGGTAGTAAGAAACAACGAGACCCATATTGTAACCTTGGTTAATTTGGGATTCAAGCCTTGATGCTGTCTTGTTATTGTGTGGTGCATCTAAGTTTGATTTTTTGAGGCTCTACTCTTATTTATCTTTGTAAATTATTTTTATTTCCTTGTGCAGGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATG</genome_strand>
        <mrna_strand>AAAGTCAATTCGATGAGCATTGATTTGGTACCTATTAAAATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAG.............................................................................AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAG...........................................................................................................................................................................................................................CATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAAACAACTTG-AACCTTGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688989" ref_strand="+" ref_description="SGN-E688989 [t3_tus_55_K06]">
      <seq>aaagtcaattcgatgagcattgatttggtacctattaaaattagtatatgaaatctgtagatctgcaataaagtttgagtttttgagtcttctcccccacatcaaattcatggaaatagtagccaagttgcagaaacagttcatggacttcatttcagctttgtaccgtgagagattcttggatgatcagtttcttcagcttcagaatttgcaagatgagagcaacccagactttgttcgtgaagtagtttcacttttctttgtagattcagaaaaccttatcaacaatctgacagcagctctgtgagaaataaactctttttattgtttacctttaacagaaatattggatcattagtttattatttggtcaattgtagtcaacaacaggttgtagattttaagcaagttgattcccatgtccaccagttcaagggtagcagttccagcataggtgcacaaagagtaaagaatgcttgtgtggcttttaaaaccttctgcgaagggaagaacattgaagggtgtgtgcaatgtctgcagcaggtgaaacatgaatattttcttgtgaagaaacaacttgaaccttgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42028" stop="38669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41728" g_stop="41557" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41556" i_stop="41480" i_length="77">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41479" g_stop="41203" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="449" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41202" i_stop="40984" i_length="219">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40983" g_stop="40912" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="521" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40911" i_stop="39042" i_length="1870">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39041" g_stop="38969" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="593" r_length="72" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E688989" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41728" e_stop="41557"/>
          <exon e_start="41479" e_stop="41203"/>
          <exon e_start="40983" e_stop="40912"/>
          <exon e_start="39041" e_stop="38969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTCAATTCGATGAGCATTGATTTGGTACCTATTAAAATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAGGTGGGTTGGTTTTCTTTTTTCTTTTTACTATATTAGGGAATTTTTCTGATATGAGTTTTCTTTTGTCTTTTGAAAAGAGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAGGTATCCAATTTTCCTTTTCTGCCATACATTTTTAGGTTTTTGTCATTGACTAAACTACTTTAATTGATGCTTGAAGTTGTATCTTTTTGGTAGACAAGTGATACATCCTGAGTGAATTTTATTGTGATCAAAGATTTAGCCGAATTTAGGTTATTGAATGGAAGTCTTTTAGGAGTTAGTAGTATCCCCATTAATCAGAATCTCTGTTATATTTTGCAGCATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGGGTGGGTATAGCTTGATTCTTTTACAATTTTTGCCTTTATCTATCTATCTATCTATTTGTATTATAAGGGTTTGGGTTTTTAGAAGATTTACATAAAAAGATTTGACTTTGTAGACATTAAGAAGACATGTTGGAAATTTTGTTTTCTACCATGTAAATCATAAGTCATTGGTTTTTTTTTTGCGTATAGTGATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATCCAAGGGTGTGTCCTTCTGGTCAATGAAGTGGGCTAAGAACCACGAGATCTCGGGTTAAAATCCCAGTAGAGACAAAAACACTAGGTGTTCTCTTCCCACCCTAGACTTGAGAACCATAAGGTCTCGAGTGGCAGGCATCCCGTGGAATTAGTCGAGGAACACGCAAGTTGGTCTGGACACAAGATTATAAAAAAAAAATTAAGATTTACCTATGATCATGTGGTATATTCTTGGTCGCACACAAAATACATCTATAGGGCATTTTCTAAATCTGACATTATTTGATGCTAATATGGCTTTTCATTTACGAAGGTACATGTCTAGAACCTTCCAATTTATCTTTTTTCAGACATTTCTACTACATTATAATTGCAGTACCAATGTTGTCGTGTCTTGGTGGCCCCACCTCAAGCATCCTGATCTCTGTGTGTTTCTGGCTCTCTTTTGGGACATTATTTACATAGTTCCAGTAACTAAACAAAACGAATCACGCCTTCTTGGAGTTCTATGTATACAGTCACTGCAGAATAAAGAACAGAGGGATTTGAGCAGAGATGTTTCTGGTTGGTAAAAAAATAAAATTGGAGTGTAACATGCCACTCCATTCTTGTTCAACTCTTATGCTTGAAATTATCAGATCACAACAATAGACCAGCTTCACTACTGAGTCTCTAAATCTTCGCAAAATTATTGTTGCCCCTTAGGAGGACACCAGTATGAACTGCCTCTGTGCAGAGATCTTTTCAAGTACCATCTGCTCTTTTTTCTGCCTCAAATCTGCTTAAGTCTAAGTATTCTCTTTCTTCACAGTTTGAACATGAAAGGCCAATTTAATTGAAGCATCTATTAGTAAAATCTGGTTCATTTTGTTAAAGACCTCATTTAAGAGCTAGAAAAGGTATGCCCTAACACTTAAAGATGACGTGGATTACCATACCTGCTGGCATATGGTGGAGTATTTGGAAGGATATGAATAGAAGACGTTTTGGACACAAGACCTCAATCTTGGTGGAGTATCTACACATACCGTATTTCTCCAAAAAAATAAAATAAAAAAATCTAGCATTTCTAGTTATGTTATAGTATTATATTGGATGAACTATTGTTCTTTTATACTTGCCATTCTCAGCCAAAAAAAAAAGTAAATTGGAGAAACTATTGAATATACATGTATCAACTGTTGTGTAAATACATACGGAAGTAACATCAGTCAGCTAGTAAGACCATATAGCTGTGGCGTGGGTATCTAGAATAGTAACAGGTATTACTTTTTGATTACTTTCCTCGTAGGAACTTTCAAACTCTAATTATCATTTTTGATTACTTTTATGTTATCTCAAAAAAGCTAAAGCCTTTAATTTATTAATTGCTTTCAAACATGGAATATATAATCGGAAAATGGTAGTAAGAAACAACGAGACCCATATTGTAACCTTGGTTAATTTGGGATTCAAGCCTTGATGCTGTCTTGTTATTGTGTGGTGCATCTAAGTTTGATTTTTTGAGGCTCTACTCTTATTTATCTTTGTAAATTATTTTTATTTCCTTGTGCAGGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATG</genome_strand>
        <mrna_strand>AAAGTCAATTCGATGAGCATTGATTTGGTACCTATTAAAATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAG.............................................................................AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAG...........................................................................................................................................................................................................................CATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAAACAACTTG-AACCTTGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448442" ref_strand="+" ref_description="SGN-E448442 [cSTS-3-A2]">
      <seq>tttgatgtggtacatattaaagttgcttgcttattgcaatttaaaattagtatatgaaatctgtagatctgcaataaagtttgagtttgggagaagacaaccccacatcatggaaatagtagccaagttgcagaaacagtttatggacttcatttcagctttgtaccgtgagagattcttggatgatcagtttcttcagcttcagaaattgcaagatgagagcaacccagactttgtttttgaagtagttacacttttctttgaagattcagaaaaacttatcaacaatctggcagcagctcttcaacaacaggttgtagattttaagcaagttgattcccatgtccatcagttcaagggtagcagttccagcataggtgcacaaagagtaaagaatgcttgtatggctttcaaaaccttctgcgaagagaagaacattgaagggtgtgtgcaatgtctgcagcaggtgaaacatgaatattttcttgtgaagaacaaacttgaaaccttgatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41997" stop="38671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41694" g_stop="41557" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="172" r_length="132" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41556" i_stop="41480" i_length="77">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.863" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41479" g_stop="41349" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="303" r_length="131" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41348" i_stop="41272" i_length="77">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.606" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41271" g_stop="41203" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="372" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41202" i_stop="40984" i_length="219">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.850" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40983" g_stop="40912" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="444" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40911" i_stop="39042" i_length="1870">
            <donor d_prob="0.970" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39041" g_stop="38970" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="516" r_length="72" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E448442" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41694" e_stop="41557"/>
          <exon e_start="41479" e_stop="41349"/>
          <exon e_start="41271" e_stop="41203"/>
          <exon e_start="40983" e_stop="40912"/>
          <exon e_start="39041" e_stop="38970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAGGTGGGTTGGTTTTCTTTTTTCTTTTTACTATATTAGGGAATTTTTCTGATATGAGTTTTCTTTTGTCTTTTGAAAAGAGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAGGTATCCAATTTTCCTTTTCTGCCATACATTTTTAGGTTTTTGTCATTGACTAAACTACTTTAATTGATGCTTGAAGTTGTATCTTTTTGGTAGACAAGTGATACATCCTGAGTGAATTTTATTGTGATCAAAGATTTAGCCGAATTTAGGTTATTGAATGGAAGTCTTTTAGGAGTTAGTAGTATCCCCATTAATCAGAATCTCTGTTATATTTTGCAGCATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGGGTGGGTATAGCTTGATTCTTTTACAATTTTTGCCTTTATCTATCTATCTATCTATTTGTATTATAAGGGTTTGGGTTTTTAGAAGATTTACATAAAAAGATTTGACTTTGTAGACATTAAGAAGACATGTTGGAAATTTTGTTTTCTACCATGTAAATCATAAGTCATTGGTTTTTTTTTTGCGTATAGTGATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATCCAAGGGTGTGTCCTTCTGGTCAATGAAGTGGGCTAAGAACCACGAGATCTCGGGTTAAAATCCCAGTAGAGACAAAAACACTAGGTGTTCTCTTCCCACCCTAGACTTGAGAACCATAAGGTCTCGAGTGGCAGGCATCCCGTGGAATTAGTCGAGGAACACGCAAGTTGGTCTGGACACAAGATTATAAAAAAAAAATTAAGATTTACCTATGATCATGTGGTATATTCTTGGTCGCACACAAAATACATCTATAGGGCATTTTCTAAATCTGACATTATTTGATGCTAATATGGCTTTTCATTTACGAAGGTACATGTCTAGAACCTTCCAATTTATCTTTTTTCAGACATTTCTACTACATTATAATTGCAGTACCAATGTTGTCGTGTCTTGGTGGCCCCACCTCAAGCATCCTGATCTCTGTGTGTTTCTGGCTCTCTTTTGGGACATTATTTACATAGTTCCAGTAACTAAACAAAACGAATCACGCCTTCTTGGAGTTCTATGTATACAGTCACTGCAGAATAAAGAACAGAGGGATTTGAGCAGAGATGTTTCTGGTTGGTAAAAAAATAAAATTGGAGTGTAACATGCCACTCCATTCTTGTTCAACTCTTATGCTTGAAATTATCAGATCACAACAATAGACCAGCTTCACTACTGAGTCTCTAAATCTTCGCAAAATTATTGTTGCCCCTTAGGAGGACACCAGTATGAACTGCCTCTGTGCAGAGATCTTTTCAAGTACCATCTGCTCTTTTTTCTGCCTCAAATCTGCTTAAGTCTAAGTATTCTCTTTCTTCACAGTTTGAACATGAAAGGCCAATTTAATTGAAGCATCTATTAGTAAAATCTGGTTCATTTTGTTAAAGACCTCATTTAAGAGCTAGAAAAGGTATGCCCTAACACTTAAAGATGACGTGGATTACCATACCTGCTGGCATATGGTGGAGTATTTGGAAGGATATGAATAGAAGACGTTTTGGACACAAGACCTCAATCTTGGTGGAGTATCTACACATACCGTATTTCTCCAAAAAAATAAAATAAAAAAATCTAGCATTTCTAGTTATGTTATAGTATTATATTGGATGAACTATTGTTCTTTTATACTTGCCATTCTCAGCCAAAAAAAAAAGTAAATTGGAGAAACTATTGAATATACATGTATCAACTGTTGTGTAAATACATACGGAAGTAACATCAGTCAGCTAGTAAGACCATATAGCTGTGGCGTGGGTATCTAGAATAGTAACAGGTATTACTTTTTGATTACTTTCCTCGTAGGAACTTTCAAACTCTAATTATCATTTTTGATTACTTTTATGTTATCTCAAAAAAGCTAAAGCCTTTAATTTATTAATTGCTTTCAAACATGGAATATATAATCGGAAAATGGTAGTAAGAAACAACGAGACCCATATTGTAACCTTGGTTAATTTGGGATTCAAGCCTTGATGCTGTCTTGTTATTGTGTGGTGCATCTAAGTTTGATTTTTTGAGGCTCTACTCTTATTTATCTTTGTAAATTATTTTTATTTCCTTGTGCAGGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGAT</genome_strand>
        <mrna_strand>TTAAAATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTGGGAGAAGAC-AACCC-CA-C--A-TCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTTATGGACTTCATTTCAGCTTTGTACCGTGAG.............................................................................AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAAATTGCAAGATGAGAGCAACCCAGACTTTGTTTTTGAAGTAGTTACACTTTTCTTTGAAGATTCAGAAAAACTTATCAACAATCTGGCAGCAGCTCT.............................................................................TCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCATCAGTTCAAGGGTAGCAGTTCCAG...........................................................................................................................................................................................................................CATAGGTGCACAAAGAGTAAAGAATGCTTGTATGGCTTTCAAAACCTTCTGCGAAGAGAAGAACATTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422490" ref_strand="+" ref_description="SGN-E422490 [STM-40-D13]">
      <seq>attgatttggtacatattaaagttgcttgcttattgcaatttaaaattagtatatgaaatctgtagatctgcaataaagtttgagtttgggagaagacaaccccacatcatggaaatagtagccaagttgcagaaacagtttatggacttcatttcagctttgtaccgtgagagattcttggatgatcagtttcttcagcttcagaaattgcaagatgagagcaacccagactttgtttttgaagtagttacacttttctttgaagattcagaaaaacttatcaacaatctggcagcagctcttcaacaacaggttgtagattttaagcaagttgattcccatgtccatcagttcaagggtagcagttccagcataggtgcacaaagagtaaagaatgcttgtatggctttcaaaaccttctgcgaagagaaaacattgaagggtgtgtgcaatgtctgcagcaggtgaaacatgaatattttcttgtgaagaacaacttgaaaccttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41997" stop="38673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41694" g_stop="41557" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="172" r_length="132" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41556" i_stop="41480" i_length="77">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.863" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41479" g_stop="41349" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="303" r_length="131" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41348" i_stop="41272" i_length="77">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.606" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41271" g_stop="41203" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="372" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41202" i_stop="40984" i_length="219">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.850" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40983" g_stop="40912" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="443" r_length="71" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40911" i_stop="39042" i_length="1870">
            <donor d_prob="0.970" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39041" g_stop="38973" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="511" r_length="68" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E422490" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41694" e_stop="41557"/>
          <exon e_start="41479" e_stop="41349"/>
          <exon e_start="41271" e_stop="41203"/>
          <exon e_start="40983" e_stop="40912"/>
          <exon e_start="39041" e_stop="38973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAGGTGGGTTGGTTTTCTTTTTTCTTTTTACTATATTAGGGAATTTTTCTGATATGAGTTTTCTTTTGTCTTTTGAAAAGAGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAGGTATCCAATTTTCCTTTTCTGCCATACATTTTTAGGTTTTTGTCATTGACTAAACTACTTTAATTGATGCTTGAAGTTGTATCTTTTTGGTAGACAAGTGATACATCCTGAGTGAATTTTATTGTGATCAAAGATTTAGCCGAATTTAGGTTATTGAATGGAAGTCTTTTAGGAGTTAGTAGTATCCCCATTAATCAGAATCTCTGTTATATTTTGCAGCATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGGGTGGGTATAGCTTGATTCTTTTACAATTTTTGCCTTTATCTATCTATCTATCTATTTGTATTATAAGGGTTTGGGTTTTTAGAAGATTTACATAAAAAGATTTGACTTTGTAGACATTAAGAAGACATGTTGGAAATTTTGTTTTCTACCATGTAAATCATAAGTCATTGGTTTTTTTTTTGCGTATAGTGATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATCCAAGGGTGTGTCCTTCTGGTCAATGAAGTGGGCTAAGAACCACGAGATCTCGGGTTAAAATCCCAGTAGAGACAAAAACACTAGGTGTTCTCTTCCCACCCTAGACTTGAGAACCATAAGGTCTCGAGTGGCAGGCATCCCGTGGAATTAGTCGAGGAACACGCAAGTTGGTCTGGACACAAGATTATAAAAAAAAAATTAAGATTTACCTATGATCATGTGGTATATTCTTGGTCGCACACAAAATACATCTATAGGGCATTTTCTAAATCTGACATTATTTGATGCTAATATGGCTTTTCATTTACGAAGGTACATGTCTAGAACCTTCCAATTTATCTTTTTTCAGACATTTCTACTACATTATAATTGCAGTACCAATGTTGTCGTGTCTTGGTGGCCCCACCTCAAGCATCCTGATCTCTGTGTGTTTCTGGCTCTCTTTTGGGACATTATTTACATAGTTCCAGTAACTAAACAAAACGAATCACGCCTTCTTGGAGTTCTATGTATACAGTCACTGCAGAATAAAGAACAGAGGGATTTGAGCAGAGATGTTTCTGGTTGGTAAAAAAATAAAATTGGAGTGTAACATGCCACTCCATTCTTGTTCAACTCTTATGCTTGAAATTATCAGATCACAACAATAGACCAGCTTCACTACTGAGTCTCTAAATCTTCGCAAAATTATTGTTGCCCCTTAGGAGGACACCAGTATGAACTGCCTCTGTGCAGAGATCTTTTCAAGTACCATCTGCTCTTTTTTCTGCCTCAAATCTGCTTAAGTCTAAGTATTCTCTTTCTTCACAGTTTGAACATGAAAGGCCAATTTAATTGAAGCATCTATTAGTAAAATCTGGTTCATTTTGTTAAAGACCTCATTTAAGAGCTAGAAAAGGTATGCCCTAACACTTAAAGATGACGTGGATTACCATACCTGCTGGCATATGGTGGAGTATTTGGAAGGATATGAATAGAAGACGTTTTGGACACAAGACCTCAATCTTGGTGGAGTATCTACACATACCGTATTTCTCCAAAAAAATAAAATAAAAAAATCTAGCATTTCTAGTTATGTTATAGTATTATATTGGATGAACTATTGTTCTTTTATACTTGCCATTCTCAGCCAAAAAAAAAAGTAAATTGGAGAAACTATTGAATATACATGTATCAACTGTTGTGTAAATACATACGGAAGTAACATCAGTCAGCTAGTAAGACCATATAGCTGTGGCGTGGGTATCTAGAATAGTAACAGGTATTACTTTTTGATTACTTTCCTCGTAGGAACTTTCAAACTCTAATTATCATTTTTGATTACTTTTATGTTATCTCAAAAAAGCTAAAGCCTTTAATTTATTAATTGCTTTCAAACATGGAATATATAATCGGAAAATGGTAGTAAGAAACAACGAGACCCATATTGTAACCTTGGTTAATTTGGGATTCAAGCCTTGATGCTGTCTTGTTATTGTGTGGTGCATCTAAGTTTGATTTTTTGAGGCTCTACTCTTATTTATCTTTGTAAATTATTTTTATTTCCTTGTGCAGGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGAT</genome_strand>
        <mrna_strand>TTAAAATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTGGGAGAAGAC-AACCC-CA-C--A-TCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTTATGGACTTCATTTCAGCTTTGTACCGTGAG.............................................................................AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAAATTGCAAGATGAGAGCAACCCAGACTTTGTTTTTGAAGTAGTTACACTTTTCTTTGAAGATTCAGAAAAACTTATCAACAATCTGGCAGCAGCTCT.............................................................................TCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCATCAGTTCAAGGGTAGCAGTTCCAG...........................................................................................................................................................................................................................CATAGGTGCACAAAGAGTAAAGAATGCTTGTATGGCTTTCAAAACCTTCTGCGAAGAGAA-AACATTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAAC-AACTTGAAACCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243526" ref_strand="+" ref_description="SGN-E243526 [cLED-34-L24]">
      <seq>ttaaaattagtatatgaaatctgtggatctgcaataaagtttgagtttttgagtcttctcccccacatcaaattcatggaaatagtagccaaagtgcagaaacagttcatggacttcatttcagctttgtaccgtgagagattcttggatgatcagtttcttcagcttcagaatttgcaagatgagagcaacccatactttgttcgtgaagtagtttcacttttctttgtagattcagaaaaccttatcaacaatctgacagcagctcttcaacaacaggttgtagattttaagcaagttgattcccatgtccaccagttcaagggtagcagatccagcataggtgcacaaagagttaagaatgcttgtgtggcttttaaaaccttctgcgaagggaagaacattgaagggtgtgtgcaatgtctgcagcacgtgaaacatgaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41994" stop="38705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41694" g_stop="41557" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41556" i_stop="41480" i_length="77">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41479" g_stop="41349" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="269" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41348" i_stop="41272" i_length="77">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41271" g_stop="41203" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="338" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41202" i_stop="40984" i_length="219">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.850" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40983" g_stop="40912" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="410" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40911" i_stop="39042" i_length="1870">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39041" g_stop="39005" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="447" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E243526" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41694" e_stop="41557"/>
          <exon e_start="41479" e_stop="41349"/>
          <exon e_start="41271" e_stop="41203"/>
          <exon e_start="40983" e_stop="40912"/>
          <exon e_start="39041" e_stop="39005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAGGTGGGTTGGTTTTCTTTTTTCTTTTTACTATATTAGGGAATTTTTCTGATATGAGTTTTCTTTTGTCTTTTGAAAAGAGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAGGTATCCAATTTTCCTTTTCTGCCATACATTTTTAGGTTTTTGTCATTGACTAAACTACTTTAATTGATGCTTGAAGTTGTATCTTTTTGGTAGACAAGTGATACATCCTGAGTGAATTTTATTGTGATCAAAGATTTAGCCGAATTTAGGTTATTGAATGGAAGTCTTTTAGGAGTTAGTAGTATCCCCATTAATCAGAATCTCTGTTATATTTTGCAGCATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGGGTGGGTATAGCTTGATTCTTTTACAATTTTTGCCTTTATCTATCTATCTATCTATTTGTATTATAAGGGTTTGGGTTTTTAGAAGATTTACATAAAAAGATTTGACTTTGTAGACATTAAGAAGACATGTTGGAAATTTTGTTTTCTACCATGTAAATCATAAGTCATTGGTTTTTTTTTTGCGTATAGTGATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATCCAAGGGTGTGTCCTTCTGGTCAATGAAGTGGGCTAAGAACCACGAGATCTCGGGTTAAAATCCCAGTAGAGACAAAAACACTAGGTGTTCTCTTCCCACCCTAGACTTGAGAACCATAAGGTCTCGAGTGGCAGGCATCCCGTGGAATTAGTCGAGGAACACGCAAGTTGGTCTGGACACAAGATTATAAAAAAAAAATTAAGATTTACCTATGATCATGTGGTATATTCTTGGTCGCACACAAAATACATCTATAGGGCATTTTCTAAATCTGACATTATTTGATGCTAATATGGCTTTTCATTTACGAAGGTACATGTCTAGAACCTTCCAATTTATCTTTTTTCAGACATTTCTACTACATTATAATTGCAGTACCAATGTTGTCGTGTCTTGGTGGCCCCACCTCAAGCATCCTGATCTCTGTGTGTTTCTGGCTCTCTTTTGGGACATTATTTACATAGTTCCAGTAACTAAACAAAACGAATCACGCCTTCTTGGAGTTCTATGTATACAGTCACTGCAGAATAAAGAACAGAGGGATTTGAGCAGAGATGTTTCTGGTTGGTAAAAAAATAAAATTGGAGTGTAACATGCCACTCCATTCTTGTTCAACTCTTATGCTTGAAATTATCAGATCACAACAATAGACCAGCTTCACTACTGAGTCTCTAAATCTTCGCAAAATTATTGTTGCCCCTTAGGAGGACACCAGTATGAACTGCCTCTGTGCAGAGATCTTTTCAAGTACCATCTGCTCTTTTTTCTGCCTCAAATCTGCTTAAGTCTAAGTATTCTCTTTCTTCACAGTTTGAACATGAAAGGCCAATTTAATTGAAGCATCTATTAGTAAAATCTGGTTCATTTTGTTAAAGACCTCATTTAAGAGCTAGAAAAGGTATGCCCTAACACTTAAAGATGACGTGGATTACCATACCTGCTGGCATATGGTGGAGTATTTGGAAGGATATGAATAGAAGACGTTTTGGACACAAGACCTCAATCTTGGTGGAGTATCTACACATACCGTATTTCTCCAAAAAAATAAAATAAAAAAATCTAGCATTTCTAGTTATGTTATAGTATTATATTGGATGAACTATTGTTCTTTTATACTTGCCATTCTCAGCCAAAAAAAAAAGTAAATTGGAGAAACTATTGAATATACATGTATCAACTGTTGTGTAAATACATACGGAAGTAACATCAGTCAGCTAGTAAGACCATATAGCTGTGGCGTGGGTATCTAGAATAGTAACAGGTATTACTTTTTGATTACTTTCCTCGTAGGAACTTTCAAACTCTAATTATCATTTTTGATTACTTTTATGTTATCTCAAAAAAGCTAAAGCCTTTAATTTATTAATTGCTTTCAAACATGGAATATATAATCGGAAAATGGTAGTAAGAAACAACGAGACCCATATTGTAACCTTGGTTAATTTGGGATTCAAGCCTTGATGCTGTCTTGTTATTGTGTGGTGCATCTAAGTTTGATTTTTTGAGGCTCTACTCTTATTTATCTTTGTAAATTATTTTTATTTCCTTGTGCAGGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATAT</genome_strand>
        <mrna_strand>TTAAAATTAGTATATGAAATCTGTGGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAAGTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAG.............................................................................AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCATACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCT.............................................................................TCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGATCCAG...........................................................................................................................................................................................................................CATAGGTGCACAAAGAGTTAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCAATGTCTGCAGCACGTGAAACATGAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294426" ref_strand="+" ref_description="SGN-E294426 [cLET-14-K8]">
      <seq>attagtatatgaaatctgtagatctgcaataaagtttgagtttttgagtcttctcccccacatcaaattcatggaaatagtagccaagttgcagaaacagttcatggacttcatttcagctttgtaccgtgagagattcttggatgatcagtttcttcagcttcagaatttgcaagatgagagccacccagactttgttcgtgaagtagtttcacttttctttgtagattcagaaaaccttatcaacaatctgacagcagctcttcaacaacaggttgtagattttaagcaagttgattcccatgtccaccagttcaagggtagcagttccagcataggtgcacaaagagtaaagaatgcttgtgtggcttttaaaaccttctgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41989" stop="40631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41689" g_stop="41557" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41556" i_stop="41480" i_length="77">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41479" g_stop="41349" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="264" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41348" i_stop="41272" i_length="77">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41271" g_stop="41203" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="333" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41202" i_stop="40984" i_length="219">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40983" g_stop="40931" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="386" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E294426" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41689" e_stop="41557"/>
          <exon e_start="41479" e_stop="41349"/>
          <exon e_start="41271" e_stop="41203"/>
          <exon e_start="40983" e_stop="40931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAGGTGGGTTGGTTTTCTTTTTTCTTTTTACTATATTAGGGAATTTTTCTGATATGAGTTTTCTTTTGTCTTTTGAAAAGAGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAGGTATCCAATTTTCCTTTTCTGCCATACATTTTTAGGTTTTTGTCATTGACTAAACTACTTTAATTGATGCTTGAAGTTGTATCTTTTTGGTAGACAAGTGATACATCCTGAGTGAATTTTATTGTGATCAAAGATTTAGCCGAATTTAGGTTATTGAATGGAAGTCTTTTAGGAGTTAGTAGTATCCCCATTAATCAGAATCTCTGTTATATTTTGCAGCATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCG</genome_strand>
        <mrna_strand>ATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAG.............................................................................AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCCACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCT.............................................................................TCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAG...........................................................................................................................................................................................................................CATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257454" ref_strand="+" ref_description="SGN-E257454 [cLEG-45-F9]">
      <seq>atagtagccaagttgcagaaacagttcatggacttcatttcagctttgtaccgtgagagattcttggatgatcagtttcttcagcttcagaatttgcaagatgagagcaacccagactttgttcgtgaagtagtttcacttttctttgtagattcagaaaaccttatcaacaatctgacagcagctctgtgagaaataaactctttttattgtttacctttaacagaaatattggatcattagtttattatttggtcaattgtaatcaacaacaggttgtagattttaagcaagttgattcccatgtccaccagttcaagggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41913" stop="40913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41613" g_stop="41557" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41556" i_stop="41480" i_length="77">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41479" g_stop="41213" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="324" r_length="267" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E257454" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41613" e_stop="41557"/>
          <exon e_start="41479" e_stop="41213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAGGTGGGTTGGTTTTCTTTTTTCTTTTTACTATATTAGGGAATTTTTCTGATATGAGTTTTCTTTTGTCTTTTGAAAAGAGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTA</genome_strand>
        <mrna_strand>ATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAG.............................................................................AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAATCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262768" ref_strand="+" ref_description="SGN-E262768 [cLEG-63-D4]">
      <seq>aagtcaattcgatgagcattgatttggtacctattaaaattagtatatgaaatctgtagatctgcaataaagtttgagtttttgagtcttctcccccacatcaaattcatggaaatagtagccaagttgcagaaacagttcatggacttcatttcagctttgtaccgtgagagattcttggatgatcagtttcttcagcttcagaatttgcaagatgagagcaacccagactttgttcgtgaagtagtttcacttttctttgtagattcagaaaaccttatcaacaatctgacagcagctctgtgagaaataaactctttttattgtttacctttaacagaaatattggatcattagtttattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42027" stop="40985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41727" g_stop="41557" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41556" i_stop="41480" i_length="77">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41479" g_stop="41285" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="366" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E262768" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41727" e_stop="41557"/>
          <exon e_start="41479" e_stop="41285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCAATTCGATGAGCATTGATTTGGTACCTATTAAAATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAGGTGGGTTGGTTTTCTTTTTTCTTTTTACTATATTAGGGAATTTTTCTGATATGAGTTTTCTTTTGTCTTTTGAAAAGAGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATT</genome_strand>
        <mrna_strand>AAGTCAATTCGATGAGCATTGATTTGGTACCTATTAAAATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAG.............................................................................AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543175" ref_strand="+" ref_description="SGN-E543175 [TUS-64-N17]">
      <seq>gtaaatatgatccttttgggcgacaaattgctatgtaaaatcaaaattctccattgaaattgctctcaggaaatggcgaaagattcaccaaaaactcccaagtcgaggtcggcgacgaatccatcagttggcgtttgggcagtacagtgtgaaaaatgcttgaaatggaggaggattgcgacacaggaacagtttgaagatatcagaagtaggtttactgaagaaccctttaactgccccaatggtacttgtgatgatcctgcagacattgagtacgatgcttctcgaacttgggctattgacaagcccaatctccctaaaaccccatctggctttaagagagaattgtacctcaggagagattactctaagatggatacttattatttcactcctttagggaagaaactcagatccgttactgatgttactacttttcttgaacaaaatccccagttatctgacgttaaaccctcagatttcagctttaccagccccaaagttatggatgacaccataccctctaccgctcttcttgccaactctcacaagaagggtgtagctagtagcactaaatgactggatggatggagctggacttgttcatatgcttagtagatgcactgtttagagtcttaaaggttcaacttattcgccatgtattgttattttccatctgcaaaatacatttcaactgctctgtttacttttcatggtgatggattttggtgtgacaaaaaggaaatttgttagccttctttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45189" stop="43692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44889" g_stop="44788" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44787" i_stop="44653" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44652" g_stop="43984" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="770" r_length="668" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E543175" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44889" e_stop="44788"/>
          <exon e_start="44652" e_stop="43984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAATATGATCCTTTTGGGCGACAAATTGCTATGTAAAATCAAAATTCTCCATTGAAATTGCTCTCAGGAAATGGCGAAAGATTCACCAAAAACTCCCAAGGTAAATTTTATACTTGCTGTTCTGTTTTGCAAAAATGCTACCGCTACTTGTAGCTTTTTTGCTTTAATTACAGATCTGTCGCCTGATTTCCGAATGGCTGTTCAGGTTTTGATATATACTTTGTTTTTGTGACAGTCGAGGTCGGCGACGAATCCATCAGTTGGCGTTTGGGCAGTACAGTGTGAAAAATGCTTGAAATGGAGGAGGATTGCGACACAGGAACAGTTTGAAGATATCAGAAGTAGGTTTACTGAAGAACCCTTTAACTGCCCCAATGGTACTTGTGATGATCCTGCAGACATTGAGTACGATGCTTCTCGAACTTGGGCTATTGACAAGCCCAATCTCCCTAAAACCCCATCTGGCTTTAAGAGAGAATTGTACCTCAGGAGAGATTACTCTAAGATGGATACTTATTATTTCACTCCTTTAGGGAAGAAACTCAGATCCGTTACTGATGTTACTACTTTTCTTGAACAAAATCCCCAGTTATCTGACGTTAAACCCTCAGATTTCAGCTTTACCAGCCCCAAAGTTATGGATGACACCATACCCTCTACCGCTCTTCTTGCCAACTCTCACAAGAAGGGTGTAGCTAGTAGCACTAAATGACTGGATGGATGGAGCTGGACTTGTTCATATGCTTAGTAGATGCACTGTTTAGAGTCTTAAAGGTTCAACTTATTCGCCATGTATTGTTATTTTCCATCTGCAAAATACATTTCAACTGCTCTGTTTACTTTTCATGGTGATGGATTTGGTTGTGACAAAAAGGAAAATTTGTTAGCCTTCTTTACTTTGAGT</genome_strand>
        <mrna_strand>GTAAATATGATCCTTTTGGGCGACAAATTGCTATGTAAAATCAAAATTCTCCATTGAAATTGCTCTCAGGAAATGGCGAAAGATTCACCAAAAACTCCCAAG.......................................................................................................................................TCGAGGTCGGCGACGAATCCATCAGTTGGCGTTTGGGCAGTACAGTGTGAAAAATGCTTGAAATGGAGGAGGATTGCGACACAGGAACAGTTTGAAGATATCAGAAGTAGGTTTACTGAAGAACCCTTTAACTGCCCCAATGGTACTTGTGATGATCCTGCAGACATTGAGTACGATGCTTCTCGAACTTGGGCTATTGACAAGCCCAATCTCCCTAAAACCCCATCTGGCTTTAAGAGAGAATTGTACCTCAGGAGAGATTACTCTAAGATGGATACTTATTATTTCACTCCTTTAGGGAAGAAACTCAGATCCGTTACTGATGTTACTACTTTTCTTGAACAAAATCCCCAGTTATCTGACGTTAAACCCTCAGATTTCAGCTTTACCAGCCCCAAAGTTATGGATGACACCATACCCTCTACCGCTCTTCTTGCCAACTCTCACAAGAAGGGTGTAGCTAGTAGCACTAAATGACTGGATGGATGGAGCTGGACTTGTTCATATGCTTAGTAGATGCACTGTTTAGAGTCTTAAAGGTTCAACTTATTCGCCATGTATTGTTATTTTCCATCTGCAAAATACATTTCAACTGCTCTGTTTACTTTTCATGGTGATGGATTTTGGTGTGACAAAAAGG-AAATTTGTTAGCCTTCTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543174" ref_strand="+" ref_description="SGN-E543174 [TUS-64-N17](-)">
      <seq>gtaaatatgatccttttgggcgacaaattgctatgtaaaatcaaaattctccattgaaattgctctcaggaaatggcgaaagattcaccaaaaactcccaagtcgaggtcggcgacgaatccatcagttggcgtttgggcagtacagtgtgaaaaatgcttgaaatggaggaggattgcgacacaggaacagtttgaagatatcagaagtaggtttactgaagaaccctttaactgccccaatggtacttgtgatgatcctgcagacattgagtacgatgcttctcgaacttgggctattgacaagcccaatctccctaaaaccccatctggctttaagagagaattgtacctcaggagagattactctaagatggatacttattatttcactcctttagggaagaaactcagatccgttactgatgttactacttttcttgaacaaaatccccagttatctgacgttaaaccctcagatttcagctttaccagccccaaagttatggatgacaccataccctctaccgctcttcttgccaactctcacaagaagggtgtagctagtagcactaaatgactggatggatggagctggacttgttcatatgcttagtagatgcactgtttagagtcttaaaggttcaacttattcgccatgtattgttattttccatctgcaaaatacatttcaactgctctgtttacttttcatggtgatggatttggttgtgacaaaaaggaaaatttgttagccttcttaaaaaaaaagaaaaaaaaaactcgaggggggcccgtaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45189" stop="43692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44889" g_stop="44788" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44787" i_stop="44653" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44652" g_stop="44006" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="749" r_length="647" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="762" polyA_stop="781"/>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E543174" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44889" e_stop="44788"/>
          <exon e_start="44652" e_stop="44006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAATATGATCCTTTTGGGCGACAAATTGCTATGTAAAATCAAAATTCTCCATTGAAATTGCTCTCAGGAAATGGCGAAAGATTCACCAAAAACTCCCAAGGTAAATTTTATACTTGCTGTTCTGTTTTGCAAAAATGCTACCGCTACTTGTAGCTTTTTTGCTTTAATTACAGATCTGTCGCCTGATTTCCGAATGGCTGTTCAGGTTTTGATATATACTTTGTTTTTGTGACAGTCGAGGTCGGCGACGAATCCATCAGTTGGCGTTTGGGCAGTACAGTGTGAAAAATGCTTGAAATGGAGGAGGATTGCGACACAGGAACAGTTTGAAGATATCAGAAGTAGGTTTACTGAAGAACCCTTTAACTGCCCCAATGGTACTTGTGATGATCCTGCAGACATTGAGTACGATGCTTCTCGAACTTGGGCTATTGACAAGCCCAATCTCCCTAAAACCCCATCTGGCTTTAAGAGAGAATTGTACCTCAGGAGAGATTACTCTAAGATGGATACTTATTATTTCACTCCTTTAGGGAAGAAACTCAGATCCGTTACTGATGTTACTACTTTTCTTGAACAAAATCCCCAGTTATCTGACGTTAAACCCTCAGATTTCAGCTTTACCAGCCCCAAAGTTATGGATGACACCATACCCTCTACCGCTCTTCTTGCCAACTCTCACAAGAAGGGTGTAGCTAGTAGCACTAAATGACTGGATGGATGGAGCTGGACTTGTTCATATGCTTAGTAGATGCACTGTTTAGAGTCTTAAAGGTTCAACTTATTCGCCATGTATTGTTATTTTCCATCTGCAAAATACATTTCAACTGCTCTGTTTACTTTTCATGGTGATGGATTTGGTTGTGACAAAAAGGAAAATTT</genome_strand>
        <mrna_strand>GTAAATATGATCCTTTTGGGCGACAAATTGCTATGTAAAATCAAAATTCTCCATTGAAATTGCTCTCAGGAAATGGCGAAAGATTCACCAAAAACTCCCAAG.......................................................................................................................................TCGAGGTCGGCGACGAATCCATCAGTTGGCGTTTGGGCAGTACAGTGTGAAAAATGCTTGAAATGGAGGAGGATTGCGACACAGGAACAGTTTGAAGATATCAGAAGTAGGTTTACTGAAGAACCCTTTAACTGCCCCAATGGTACTTGTGATGATCCTGCAGACATTGAGTACGATGCTTCTCGAACTTGGGCTATTGACAAGCCCAATCTCCCTAAAACCCCATCTGGCTTTAAGAGAGAATTGTACCTCAGGAGAGATTACTCTAAGATGGATACTTATTATTTCACTCCTTTAGGGAAGAAACTCAGATCCGTTACTGATGTTACTACTTTTCTTGAACAAAATCCCCAGTTATCTGACGTTAAACCCTCAGATTTCAGCTTTACCAGCCCCAAAGTTATGGATGACACCATACCCTCTACCGCTCTTCTTGCCAACTCTCACAAGAAGGGTGTAGCTAGTAGCACTAAATGACTGGATGGATGGAGCTGGACTTGTTCATATGCTTAGTAGATGCACTGTTTAGAGTCTTAAAGGTTCAACTTATTCGCCATGTATTGTTATTTTCCATCTGCAAAATACATTTCAACTGCTCTGTTTACTTTTCATGGTGATGGATTTGGTTGTGACAAAAAGGAAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301957" ref_strand="+" ref_description="SGN-E301957 [cLEX-3-M18]">
      <seq>taaatatgatccttttgggcgacaaattgctatgtaaaatcaaaattctccattgaaattgctctcaggaaatggcgaaagattcaccaaaaactcccaagtcgaggtcggcgacgaatccatcagttggcgtttgggcagtacagtgtgaaaaatgcttgaaatggaggaggattgcgacacaggaacagtttgaagatatcagaagtaggtttactgaagaaccctttaactgccccaatggtacttgtgatgatcctgcagacattgagtacgatgcttctcgaacttgggctattgacaagcccaatctccctaaaaccccatctggctttaagagagaattgtacctcangagagattactctaagatggatacttattatttcactcctttagggaagaaactcagatccgttactgatgttactacttttcttgaacaaaatccccagttatctgacgttaaaccctcagatttcagctttaccagccccaaagttatggatgacaccataccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45188" stop="43932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44888" g_stop="44788" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44787" i_stop="44653" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44652" g_stop="44232" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="522" r_length="421" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E301957" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44888" e_stop="44788"/>
          <exon e_start="44652" e_stop="44232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATATGATCCTTTTGGGCGACAAATTGCTATGTAAAATCAAAATTCTCCATTGAAATTGCTCTCAGGAAATGGCGAAAGATTCACCAAAAACTCCCAAGGTAAATTTTATACTTGCTGTTCTGTTTTGCAAAAATGCTACCGCTACTTGTAGCTTTTTTGCTTTAATTACAGATCTGTCGCCTGATTTCCGAATGGCTGTTCAGGTTTTGATATATACTTTGTTTTTGTGACAGTCGAGGTCGGCGACGAATCCATCAGTTGGCGTTTGGGCAGTACAGTGTGAAAAATGCTTGAAATGGAGGAGGATTGCGACACAGGAACAGTTTGAAGATATCAGAAGTAGGTTTACTGAAGAACCCTTTAACTGCCCCAATGGTACTTGTGATGATCCTGCAGACATTGAGTACGATGCTTCTCGAACTTGGGCTATTGACAAGCCCAATCTCCCTAAAACCCCATCTGGCTTTAAGAGAGAATTGTACCTCAGGAGAGATTACTCTAAGATGGATACTTATTATTTCACTCCTTTAGGGAAGAAACTCAGATCCGTTACTGATGTTACTACTTTTCTTGAACAAAATCCCCAGTTATCTGACGTTAAACCCTCAGATTTCAGCTTTACCAGCCCCAAAGTTATGGATGACACCATACCCT</genome_strand>
        <mrna_strand>TAAATATGATCCTTTTGGGCGACAAATTGCTATGTAAAATCAAAATTCTCCATTGAAATTGCTCTCAGGAAATGGCGAAAGATTCACCAAAAACTCCCAAG.......................................................................................................................................TCGAGGTCGGCGACGAATCCATCAGTTGGCGTTTGGGCAGTACAGTGTGAAAAATGCTTGAAATGGAGGAGGATTGCGACACAGGAACAGTTTGAAGATATCAGAAGTAGGTTTACTGAAGAACCCTTTAACTGCCCCAATGGTACTTGTGATGATCCTGCAGACATTGAGTACGATGCTTCTCGAACTTGGGCTATTGACAAGCCCAATCTCCCTAAAACCCCATCTGGCTTTAAGAGAGAATTGTACCTCANGAGAGATTACTCTAAGATGGATACTTATTATTTCACTCCTTTAGGGAAGAAACTCAGATCCGTTACTGATGTTACTACTTTTCTTGAACAAAATCCCCAGTTATCTGACGTTAAACCCTCAGATTTCAGCTTTACCAGCCCCAAAGTTATGGATGACACCATACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324994" ref_strand="+" ref_description="SGN-E324994 [cTOC-11-L14]">
      <seq>aaaaactcccaagtcgaggtcggcgacgaatccatcagtgggcgtttgggcagtacagtgtgaaaaatgcttgaaatggaggaggattgcgacacaggaacagtttgaagatatcagaagtaggtttactgaagaaccctttaactgccccaatggtacttgtgatgatcctgcagacattgagtacgatgcttctcgaacttgggctattgacaagcccaatctccctaaaaccccatctggctttaaaagagaattgtacctcacgagagattactctaagatggatacttattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44954" stop="44068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44800" g_stop="44788" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44787" i_stop="44653" i_length="135">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44652" g_stop="44368" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="298" r_length="285" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E324994" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44800" e_stop="44788"/>
          <exon e_start="44652" e_stop="44368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTCCCAAGGTAAATTTTATACTTGCTGTTCTGTTTTGCAAAAATGCTACCGCTACTTGTAGCTTTTTTGCTTTAATTACAGATCTGTCGCCTGATTTCCGAATGGCTGTTCAGGTTTTGATATATACTTTGTTTTTGTGACAGTCGAGGTCGGCGACGAATCCATCAGTTGGCGTTTGGGCAGTACAGTGTGAAAAATGCTTGAAATGGAGGAGGATTGCGACACAGGAACAGTTTGAAGATATCAGAAGTAGGTTTACTGAAGAACCCTTTAACTGCCCCAATGGTACTTGTGATGATCCTGCAGACATTGAGTACGATGCTTCTCGAACTTGGGCTATTGACAAGCCCAATCTCCCTAAAACCCCATCTGGCTTTAAGAGAGAATTGTACCTCAGGAGAGATTACTCTAAGATGGATACTTATTAT</genome_strand>
        <mrna_strand>AAAAACTCCCAAG.......................................................................................................................................TCGAGGTCGGCGACGAATCCATCAGTGGGCGTTTGGGCAGTACAGTGTGAAAAATGCTTGAAATGGAGGAGGATTGCGACACAGGAACAGTTTGAAGATATCAGAAGTAGGTTTACTGAAGAACCCTTTAACTGCCCCAATGGTACTTGTGATGATCCTGCAGACATTGAGTACGATGCTTCTCGAACTTGGGCTATTGACAAGCCCAATCTCCCTAAAACCCCATCTGGCTTTAAAAGAGAATTGTACCTCACGAGAGATTACTCTAAGATGGATACTTATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315124" ref_strand="-" ref_description="SGN-E315124 [cTOA-24-A14]">
      <seq>aaacgtcgcggtgactcgaaaataattaattgatcaaatttnaacaaagttcaaaaaataaacgagttttaaaaagagtcgccacataattttaggaaaactaggaaaccaattattaatctacgaaaccaaattgattctaggtaaggggttaaagttattccgaagggaaggggttaggcatccttcggaatccacaaatgtggttcccaactgaattcattttttttcaaattgagtaagaatataaaataaacacatatcataaacacacaatacacacaataaaacaataattatcggcctaaagtttgcctaacgtcaatattcacaaaataacaaatgaaatataattcgaacattttcgaataatttcaaggaaatgcacctccaggtacctgtaaagacacttagtaaaagagttagtgtcaaaataatataaataaaaataaataactcaaataataactaaaatagaaatccgtcttattaacatgggagaccttggaaatcgacggtaatttcttcatcggccaatttcaacaactaaaatatataaacttaaattaaaattccatctttttaaattggggaggcctctaaacccgacggatatatttttatcggcccatttcaacaactaaaatatataaacttaaattaaaattccgtctttttaaaatggggaggcctctaaacccgacggataga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60428" stop="59030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60141" g_stop="59548" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59547" i_stop="59450" i_length="98">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.722" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59449" g_stop="59330" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="711" r_length="121" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E315124" ref_strand="-">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315124" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60141" e_stop="59548"/>
          <exon e_start="59449" e_stop="59330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGTCGCGACAACTCGAAAAATAATTAATTGATTCAATTTTAACAAAATT-AAAAAATAAACGAGTTTTAAAAAAGAGTCGCCACCTAATTTTTTAGGAAAACTAGGAAACCAATTATTAATCTACGAAACCAAATTGATTCTTAGGTAAGGGGTTCAAGTTATTCCGAAGGGAAGGGGTTAGGCACCCTTCGGAATCCACAAATGTGGTTCCCGACTGAATTCATTTTTTTTTCAAATTGAGGAAAGATATAAAATAAACACATATAATAAACACACAATATACACAATAAAGCAATAATTATCGGCCTAAAGTTTGTCTAACGTCAATATTCACAAAATAATGAATGAAATACAATTCGAAC-TTTTCGAATAATTTCAATGAGAAGCACCTCCGGGTACCTGTAAAGACACTTAGTAAAAGAGTTATTGTCAAAATAATATAAATAAAAATAAATAACTCAAATAATAACTAAAATAAAAATCCGTCTTATTAACATGGGAGGCCTTGGAAATCGACGGTTATTTCTTCATCGGCCACTTTCAACATATAAAATATATAAACTTGAATTGAAATTCCGTCCTTTTAAAATGAGGAGGCCTCCAAAACCGACGGAGAGTTTTCTCATTGGCCATTTTAACAAAACAAATAATATGAACTTGGCTAAAAATTTCCGTATTTTTTTAAAAAGGGAAGACCTCTAAACCCGACGGATAGATTTTTCATCGG-CC-TTTCAACATATAAAATATATAAACTTGAATTAAAATTCCGTCTTTTTAAAATGGGGAGGCCTCTAAGCCCGACGGATAGA</genome_strand>
        <mrna_strand>AAACGTCGCGGTGACTCG-AAAATAATTAATTGATCAAATTTNAACAAAGTTCAAAAAATAAACGAGTTTT-AAAAAGAGTCGCCACATAATTTT--AGGAAAACTAGGAAACCAATTATTAATCTACGAAACCAAATTGATTC-TAGGTAAGGGGTTAAAGTTATTCCGAAGGGAAGGGGTTAGGCATCCTTCGGAATCCACAAATGTGGTTCCCAACTGAATTCA-TTTTTTTTCAAATTGAGTAAGAATATAAAATAAACACATATCATAAACACACAATACACACAATAAAACAATAATTATCGGCCTAAAGTTTGCCTAACGTCAATATTCACAAAATAACAAATGAAATATAATTCGAACATTTTCGAATAATTTCAAGGAAATGCACCTCCAGGTACCTGTAAAGACACTTAGTAAAAGAGTTAGTGTCAAAATAATATAAATAAAAATAAATAACTCAAATAATAACTAAAATAGAAATCCGTCTTATTAACATGGGAGACCTTGGAAATCGACGGTAATTTCTTCATCGGCCAATTTCAACAACTAAAATATATAAACTTAAATTAAAATTCCATCTTTTTAAATTG..................................................................................................GGGAGGCCTCTAAACCCGACGGATATATTTTT-ATCGGCCCATTTCAACAACTAAAATATATAAACTTAAATTAAAATTCCGTCTTTTTAAAATGGGGAGGCCTCTAAACCCGACGGATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355460" ref_strand="+" ref_description="SGN-E355460 [cTOS-25-C9]">
      <seq>ctccatctcctacacctcaggtctatctgggtgagctgtatgtaaataattctacgctatctgatgtgacatttttagtcgaaggcaaacggttttatgcccacagaatttgtttacttgcttcttctgatgcatttcgcgcaatgtttgatggtggctacagggagagagatgccaaagatatagagattcccaacattccatgggatgtttttgagttgatgatgaggtacatatacacgggatctgttgatgttaatatgggtgttgcaaaggatcttctaagggttgctgatcaatatcttcttgagggccttaagcgtctgtgcgagtatgcaattgcccaggatatctcagtggaaaatgtctctctgatgtttgagttatcagaggctttcaatgcattgtcattaagaaatgcttgcattgtattcacattggagaagttcgacaaattaagtgtcatgccatggtattcgcaattgattcaacttatattacctgagacacgtgcgtactttgctagggtgctgagcaggccaattcaagctgacctctgatttaggttcatttttattctttgattagatgtagtatatgatgtaaattgtacaggaagtgggttttattccactcgtctctaattgcaagagttatgtgtcatttctcatcgcttgcaattccatatttgttgtgacgtttaatgtagcgtatgaagttcagttgcaacgcctgccatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68629" stop="71862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68929" g_stop="68948" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68949" i_stop="70072" i_length="1124">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70073" g_stop="70136" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="84" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70137" i_stop="70217" i_length="81">
            <donor d_prob="0.030" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70218" g_stop="70297" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="164" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70298" i_stop="70718" i_length="421">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70719" g_stop="70783" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="229" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70784" i_stop="70866" i_length="83">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70867" g_stop="70984" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="347" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70985" i_stop="71060" i_length="76">
            <donor d_prob="0.184" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71061" g_stop="71185" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="472" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71186" i_stop="71292" i_length="107">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71293" g_stop="71562" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="742" r_length="270" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E355460" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68929" e_stop="68948"/>
          <exon e_start="70073" e_stop="70136"/>
          <exon e_start="70218" e_stop="70297"/>
          <exon e_start="70719" e_stop="70783"/>
          <exon e_start="70867" e_stop="70984"/>
          <exon e_start="71061" e_stop="71185"/>
          <exon e_start="71293" e_stop="71562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCATCTCCTACACCTCAGGTTTGCTCCGCAGTTTAATGCTCATACTCTGGCAAAGTTTTTGTTCAGGTTTTTGGTTCTTAAGTTCTAACATGAGTAATACTAGTCTCTTGGTCATTTATGGGTCTTTATTTAGTTTTGCACTGTTACATGGTGCTTCTCATACCAAGTTAACACTAAGCTGTGTTTGTATTCTCATCGAGTATTTCGAAGATGCACGCTGAACCGTCTGATGTTCAAATTTAATCATTGATTGTGATAATTTGTGAAGCTTTTACCATTTACTTTATGAACACTTGTCAAACCAAGTTGTGCTAGTGTTACCTCAAGACTTGAAAGTTATAATGTAGCTGTCCTGCAAATTTAATACAATGTCAACTTTACCAACCATTTGAATTACTGCATAAAAACTCTGGGCGTACAGTTTCTTACCATATTGTAGTTCAGTTTGCTTCTCACATTGTGACCCTTGTGTTATATGCTGCTGTTTATACCAAGTTTATTATGAAAAAGCATCTTTTTAGAGTATGATATGCCTTTTATTTGTTCTTGGCATCTGTTATGCTGATGAGGGGTAGAAGACCTTAGAACCCTCTCTTGATATGCTAAATTTGCTTCACTGAGCATTATTTTTTTGGTTCTGGGAGGGTGTGTATACCAAGACTGGTATTCCTGTCAATCTCTTAATCTAGCCTATAACATTGTCAATTGTTCTATGGTCTTAGTAATACAAAACAGTTGAGTTCTGAAAACTTCACTTGCTGACCCTTAATCGCTGGCATGCTTGGTGTATTCTGAGAATCAATTAGGCAATATGAGGGCTTTTCTTATCCCTACATTTTGAGGATTTAGATTTTGTGAGTAACTCGTCTTCACTTTGGTGATCGTTTGAGGAGGGTTTACATGTTGACAGATTCCATAGGCTGTTTTCACCACAGTTTACTTGATGTTCACTTTCTTCACCAATTAACAATGTTGTCTGAGCTTTTCATGTTTGTTAGTTTGTATGTCTGCTTTCTGTCTTTTCTTTCTCAATTGACTTGTAGGTGGTTCATAACCATTCATGGTGCAGTAATTAGACAATGTATTTGATCCTATATTACATCTCTTTTCGTTATTTTCTCCTTGTGCATTTCTTTATGCAGGTCTATCTGGGTGAGCTGTATGTAAATAATTCTACGCTATCTGATGTGACATTTTTAGTCGAAGGTAGCAGCAGTTTTGTGATTCAAATCTTGTCATCTTTTTCATATCATGGTGTATCTTAATGATTTTTTGGTCCTTCACCAGGCAAACGGTTTTATGCCCACAGAATTTGTTTACTTGCTTCTTCTGATGCATTTCGCGCAATGTTTGATGGTGGCTACAGGGTAAGTAGAATAGTTGGCATAAAGATTTATTGCTTTTACTTTTAGGTTATTGGTTTCTAAATTGATCATTAGCAACACAAGATGAAAGCTGGTTTTGCTCCCAAATTTTGTCTTCTACTGCTTACCTTTCCCTTTAGACAAATTTAGATTGACTATCAAATGATTTTTGCAAAATTGCTAAAAGGCAAACATCTTTATTTGAAATGTTACAAGCATATGTGTCATGACAAATATGGCGTACAAAACTCTGATTACCTTTCCCTTTAGACAAATTTATATTGACTATCAAATGATTTTTGCAAAATTGCTTAAAGGCAAATATCTTTATTTGAAATGTTACAAGCATATTTGTCATGTGACATGACTGAATGCACAAATGTGGAGTACAAAACTCTGATGATCTGTTATATATTTATTGCAGGAGAGAGATGCCAAAGATATAGAGATTCCCAACATTCCATGGGATGTTTTTGAGTTGATGATGAGGTGCGCTGCTGTTTAATCTCTGTCACATCTGGGATACAAATCAATCTAGTAATATTGAAGACAGGAACGTTTATTGTTTGCAGGTACATATACACGGGATCTGTTGATGTTAATATGGGTGTTGCAAAGGATCTTCTAAGGGTTGCTGATCAATATCTTCTTGAGGGCCTTAAGCGTCTGTGCGAGTATGCAATTGCCCAGGTGAGTGCTGGGGACCTTTCTGTCTTAGAGGAGGATTTATGTCTGGTTTCTCCTAATAGTTTCTTATCTTTGGTAGGATATCTCAGTGGAAAATGTCTCTCTGATGTTTGAGTTATCAGAGGCTTTCAATGCATTGTCATTAAGAAATGCTTGCATTGTATTCACATTGGAGAAGTTCGACAAATTAAGTGTCATGCCATGGTGTGTCCAGATTCCTATCCTTTTGCTTCATCATTTCTTGGAATAAAAAAGACACGCTTAACAAACATGAATTGTGTATTAACACACTGTAATCTTGTTACATGTAGGTATTCGCAATTGATTCAACTTATATTACCTGAGACACGTGCGTACTTTGCTAGGGTGCTGAGCAGGCCAATTCAAGCTGACCTCTGATTTAGGTTCATTTTTATTCTTTGATTAGATGTAGTATATGATGTAAATTGTACAGGAAGTGGGTTTTATTCCACTCGTCTCTAATTGCAAGAGTTATGTGTCATTTCTCATCGCTTGCAATTCCATATTTGTTGTGACGTTTAATGTAGCGTATGAAGTTCAGTTGCAACGCCTGCCATGCT</genome_strand>
        <mrna_strand>CTCCATCTCCTACACCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATCTGGGTGAGCTGTATGTAAATAATTCTACGCTATCTGATGTGACATTTTTAGTCGAAG.................................................................................GCAAACGGTTTTATGCCCACAGAATTTGTTTACTTGCTTCTTCTGATGCATTTCGCGCAATGTTTGATGGTGGCTACAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGAGATGCCAAAGATATAGAGATTCCCAACATTCCATGGGATGTTTTTGAGTTGATGATGAG...................................................................................GTACATATACACGGGATCTGTTGATGTTAATATGGGTGTTGCAAAGGATCTTCTAAGGGTTGCTGATCAATATCTTCTTGAGGGCCTTAAGCGTCTGTGCGAGTATGCAATTGCCCAG............................................................................GATATCTCAGTGGAAAATGTCTCTCTGATGTTTGAGTTATCAGAGGCTTTCAATGCATTGTCATTAAGAAATGCTTGCATTGTATTCACATTGGAGAAGTTCGACAAATTAAGTGTCATGCCATG...........................................................................................................GTATTCGCAATTGATTCAACTTATATTACCTGAGACACGTGCGTACTTTGCTAGGGTGCTGAGCAGGCCAATTCAAGCTGACCTCTGATTTAGGTTCATTTTTATTCTTTGATTAGATGTAGTATATGATGTAAATTGTACAGGAAGTGGGTTTTATTCCACTCGTCTCTAATTGCAAGAGTTATGTGTCATTTCTCATCGCTTGCAATTCCATATTTGTTGTGACGTTTAATGTAGCGTATGAAGTTCAGTTGCAACGCCTGCCATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230182" ref_strand="+" ref_description="SGN-E230182 [cLEL-33-I1](-)">
      <seq>atctgttgatgttaatatgggtgttgcaaaggatcttcttaagggttgctgatcnaatatcttcttgagggccttaagcgtctgtgcgagtatgcaattgcccaggatatctcagtggaaaatgtctctctgatgtttgagttatcagaggctttcaatgcattgtcattaagaaatgcttgcattgtattcacattggagaagttcgacaaattaagtgtcatgccatggtattcgcaattgattcaacttatattacctgagacacgtgcgtactttgctagggtgctgagcaggccaattcaagctgacctctgatttaggttcatttttattctttgattagatgtagtatatgatgtaaattgtacaggaagtgggttttattccactcgtctctaattgcaagagttatgtgtcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70582" stop="115099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70882" g_stop="70984" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70985" i_stop="71060" i_length="76">
            <donor d_prob="0.184" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71061" g_stop="71185" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="230" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71186" i_stop="71292" i_length="107">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71293" g_stop="71482" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="420" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71483" i_stop="73139" i_length="1657">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73140" g_stop="73156" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="437" r_length="17" r_score="0.824"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E230182" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70882" e_stop="70984"/>
          <exon e_start="71061" e_stop="71185"/>
          <exon e_start="71293" e_stop="71482"/>
          <exon e_start="73140" e_stop="73156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGTTGATGTTAATATGGGTGTTGCAAAGGATCTTC-TAAGGGTTGCTGATC-AATATCTTCTTGAGGGCCTTAAGCGTCTGTGCGAGTATGCAATTGCCCAGGTGAGTGCTGGGGACCTTTCTGTCTTAGAGGAGGATTTATGTCTGGTTTCTCCTAATAGTTTCTTATCTTTGGTAGGATATCTCAGTGGAAAATGTCTCTCTGATGTTTGAGTTATCAGAGGCTTTCAATGCATTGTCATTAAGAAATGCTTGCATTGTATTCACATTGGAGAAGTTCGACAAATTAAGTGTCATGCCATGGTGTGTCCAGATTCCTATCCTTTTGCTTCATCATTTCTTGGAATAAAAAAGACACGCTTAACAAACATGAATTGTGTATTAACACACTGTAATCTTGTTACATGTAGGTATTCGCAATTGATTCAACTTATATTACCTGAGACACGTGCGTACTTTGCTAGGGTGCTGAGCAGGCCAATTCAAGCTGACCTCTGATTTAGGTTCATTTTTATTCTTTGATTAGATGTAGTATATGATGTAAATTGTACAGGAAGTGGGTTTTATTCCACTCGTCTCTAATTGCAAGAGTTATGTGTCATTTCTCATCGCTTGCAATTCCATATTTGTTGTGACGTTTAATGTAGCGTATGAAGTTCAGTTGCAACGCCTGCCATGCTTCTAAAACTCTTTCACCAAAAACTTACAAATAAATTACCGGTTTTATGAGTTGTATAGATCTAAATTATCCACTATATTATTGGGATCTCATCTATATTATTTTGAATCGAGGGTCCATTAGAAATAGTCTCTCTCTTACCTTCAAGGTAGCGGTGAGGTGTGCTTCTGTAGACTTTACTTTGTGGGAAATGGGAATACACCATCCATCTTTCATACTTGAGATAATCTGTATCGATTGGAATTTCTGTTCCTTGTTCTTTTTAGGACAATTATTTAGTGAATGATATTTTTTGTTTCTTGTGCATTTTACCCGGGGCGTTAAATTACGTTATTCTTTATTGCTGGCATGTGAGATATGAATTGATATCCTTATGGCTTGTATGATCCTTAGACAATTCTCATTTTATCACCAGTTTTGTTTAAAATTTTAGCTAGGCTAGAAGTTCAAATAATTTTTTTTTTACTATCTTCATATATAAGGACTGACAAAACCTTCTATCATAAATGAGGCCTTATCAGATGTATAGTCTTTTCGGTCGAAGTATAATCTTTGTTACTAAGTTATAATTACGCGAGAGAGATTATAAAAATTAATATGAGTTCAACATACGTTAGGAAAATTAGTTGAAAGTGTATGCAAAAACAGTAGTTAATTAAGAATCAAATTGTGTATATGGATTTTTTCTTAAATATAGGTGATTGCAATCTCAAAATTTGGTATGGAAATTGGACCTCTATTCAGTTGCCAGGTCCAGACCATTAGAGAAGTGAACTGTATCTCCACCGAAAGGACTAATGGCCACTTATAGGATTGGAATCGGAATCAGAATCAGAGTCCTGATTTTCTTAGAGCCTTTTACTAGTTCTAATCTCCTTCTTAATTTCTGTATATGCATTTAATCTGTTTTCAATTTCTTGTCTTTCCAAAATTGTAGTAGTTGCCAGTTCCTTTCTGAATTGTCGTCAATTTCTCTCTCTTTTTTAATTATCCATATTGGACATGGACAAACGACTAAACAGGTCGTTACATTAGATACCAATTTACCCATCGTTCGTCCCCGAACGATCTACCATTCACACAAACAACATATTTGTTCTGTCTCTCCTTTATCAATAGGTATATCTGGATTTTCCACCCAGAGTATAAATCTTTGTCTAAACTCTGGATAGTAAAATAGAGCTCAATGCCATATCAACTTCCTTTACTCTCTCCAAGTTGATTTAATAAAAAGAGCACTAGTTTTTATATAACCATAGATAGTTTAATTTTTAAAACTCTTATTTGGCCTTACCGACATGTTTTTATATGCATAATATTTATTTTTTTTAGACCAGTTTCCATGCAATCAAACACTTAACCTAAATAATATTTTTATATGCATTTTTCAACCCAAAAATGATATTCATAATGAATCAAAAAGCCTAGAAGATGAAATTCTTGCCTTCCACACCACTAAAAGTGAAAACAAAAAAGGAAGAAGAAACAACACATTAGGATGAAAAGAATTACTATATCCTTTTTTGTTGAAACTATAAAGTAGTCCTAGTATTAAAAAAAAATACGCTCAAACCATAGTAAATAAAAAATAAAAA</genome_strand>
        <mrna_strand>ATCTGTTGATGTTAATATGGGTGTTGCAAAGGATCTTCTTAAGGGTTGCTGATCNAATATCTTCTTGAGGGCCTTAAGCGTCTGTGCGAGTATGCAATTGCCCAG............................................................................GATATCTCAGTGGAAAATGTCTCTCTGATGTTTGAGTTATCAGAGGCTTTCAATGCATTGTCATTAAGAAATGCTTGCATTGTATTCACATTGGAGAAGTTCGACAAATTAAGTGTCATGCCATG...........................................................................................................GTATTCGCAATTGATTCAACTTATATTACCTGAGACACGTGCGTACTTTGCTAGGGTGCTGAGCAGGCCAATTCAAGCTGACCTCTGATTTAGGTTCATTTTTATTCTTTGATTAGATGTAGTATATGATGTAAATTGTACAGGAAGTGGGTTTTATTCCACTCGTCTCTAATTGCAAGAGTTATGTGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746096" ref_strand="+" ref_description="SGN-E746096 [GI|47105306]">
      <seq>ggacgctcaaaccatagtaaataaaaaataaaaaatggcttctcttcgttttccattcttgtttcctcagccccacaagactccgtcttccgccacttcagatgctccatctcgctccttctccaccgtcgctgtcgccgtcgcgtccggaggttcagccctcgctgccgccggagcgatcattgccataactcaaagccccaaaaatccgtttctggaaaatgctatgaattttctactttccaatttctcacctaacaaaaatcattcatcccctttgtggggttctgtttctctagcagataactcagctccggtcactgaatcgaggaccggaatggcattcccctcaattctgaaagatactcagcgactccttggaattgggctgcgtaaaaaggcggtttttggattgaaaaacattgatgtctatgcttatggtgtgtatgctgatgatgttgatgtaaagaggtatctggctgagaagcatggacggcgctctgtttctgaactgcagcaaaaggaagagttgagaaatcatctcatggaaaacaatatacgcatgactatcaggcttcaaatagtctatggcaggctaagcattaattctgtgcgcagtgctttcgaagaatctgttggcagcagattacataagtttgggggatgtgataataaggaattgcttcaaaggttcacttcccagtttaaggatgaaattaaattacctcggggatctatcattgaactctccagagatcatgactacatactccacacaacaattgatggaaaggaagtgggaagcatacaaagcaaactcttatgcagatcaatcctagacctatatattggtgatgagtcatttgatcacaaagccaatgaagatgtcgagtcgaacttggcttctctacttcacaagtagctacttctttagcataaagagaattttatcaacacgaggaatcaagttgtggtgatttatacttaacgcatgttagcttctattggttggatgattctctttaaatagttgaactagagaattaatctcttgcaaactgaacttagatctatgttttatatgctgatgagtggttttctctaaaacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72825" stop="115102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73123" g_stop="73562" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73563" i_stop="74670" i_length="1108">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74671" g_stop="74920" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="690" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74921" i_stop="76797" i_length="1877">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76798" g_stop="76889" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="782" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76890" i_stop="77831" i_length="942">
            <donor d_prob="0.779" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77832" g_stop="78173" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="783" r_stop="1124" r_length="342" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E746096" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>1124</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73123" e_stop="73562"/>
          <exon e_start="74671" e_stop="74920"/>
          <exon e_start="76798" e_stop="76889"/>
          <exon e_start="77832" e_stop="78173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACGCTCAAACCATAGTAAATAAAAAATAAAAAATGGCTTCTCTTCGTTTTCCATTCTTGTTTCCTCAGCCCCACAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATAACTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCCTTTGTGGGGTTCTGTTTCTCTAGCAGATAACTCAGCTCCGGTCACTGAATCGAGGACCGGAATGGCATTCCCCTCAATTCTGAAAGATACTCAGCGACTCCTTGGAATTGGGCTGCGTAAAAAGGCGGTTTTTGGATTGAAAAACATTGATGTCTATGCTTATGGTACTACATTGTCACTGCAATTTACTTAATTGATTTTGCTCTTTATCAATTTATGTTTCTGTCTCTTCTGCAAATGTTGTTATGCTGTAGCTGAGGTTCTTAATTTTTGTGATCCTTGTGTGGAGCACAGATGCTCAAATATATAAAATGAATTCCAATTCTATGGCAATAGGAAGTTATGGAGGACACAGATAAGGGTAGAAGGCTATAGGTAACTGTGTGTTGTCTCACTTATCCTTCCATACTAGTAAATAGTAATTGTAGCATTACATTTTTTTGCTATAGAATTTATACCTTTTTTATGTTGAGAATGTATTTTATCGGCTTCTTCACTTCTGTTATTCTTTTCCCGTGCTTCTTTGTTATTTTTTTTCTTGATCCAAGGGTATATGGAAAACAATCTCTCTACTTTCCAAGTTAGGGGTAGTACACACTACTCTCCCTGTCAGTTGTCACAACTCAATTCATGCTCTACCATTTATAGCTGTTCATGTGAGATCGTGTGGGCTTATCAATTGTTAACAGCTTGTATAGGCTTATCGATTCATGCTTACTATACATGTTACTTGGATTAATTTTTTGTAGCAACAAATACAGTTTTTTGCACCGTCAGTGCCAGTGGTGGAGCCAGGAAGTTATACAAGGGATTCAAAAAAATAATAGGATTCTCATACAAGAGATTGAACATAGGTCTTAAAGTAGTTGTGCAACCCCTTTGCCACTTTACTAGAATTTTGCCTTCTATCGAGGGGATGCAATAGTATCAAGGGGTTTCAATAGTGAAATAATACTAATATACAATTCATTTTTGCTCTATTTGCTCAATGTAAATTTTTTAACGAGGGGAAGTCAATTGAATCTCCTTTCTGCAACGTAGTTCCGTCCCTGGTCAGTTCATAAAAATTAAACCTGTGGTGGTATCATATTTGAGAATCTCATTGCCGTCTCTAGTGGACCTTCCTTTATATGATGGGGGGATATGCATTATAGCACTCTCTGTCTCCTTTTGAAAGTTTGAGTGTCTGCATTTCAAAGTAAAACTCATAAAAGTGATGTTTACTTTGAATATGGCCTTTATCTAATGTGATATCAATATGGCATTCTCTAGGTGTGTATGCTGATGATGTTGATGTAAAGAGGTATCTGGCTGAGAAGCATGGACGGCGCTCTGTTTCTGAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGAAAACAATATACGCATGACTATCAGGCTTCAAATAGTCTATGGCAGGCTAAGCATTAATTCTGTGCGCAGTGCTTTCGAAGAATCTGTTGGCAGCAGATTACATAAGTTTGGGGGATGTGATAATAAGGAATTGCTTCAAAGGTAATTCCTTAGCCTCATATTATTCATATCTTATTCAACCTTTTCTCGATTAATTACCATATCACAACAGGGGAACAAGCCTGCCAAAGCTGGGATGAAGCACTCCATTTGCTTGCAGTCTAAATTATTATGTTTTCGATATCATAGTCTTTAACATTATTACTGGACTCTTTGCCCAACTGCGATCAATTATCACTCAGCTACATACGTCACATCTTTTCTTGAGTAGAGTTATTGAGCTGTGGACAGGTTAACCCACAAGATATTTTTTGGAAATTGAAACTTCATTGTTTCTCAATCTTTCAAACTTTTACTGCCTCCTTCCAATCTCTCTCTCTCTATATAAAGGAGAATATTAGACATGTTGACGCGGCATGCCTAAAAGCTATTTATCTTTTTTTTGTGGGTTTTTTTGGCCATTTTTCAAATTTTAAAATACAAAAAATTCTCCTAACTATTAAAGATAGTCACATTTAATTTTTTCTTTATCAGTAGTCATATTTAATTTATTTTATCATTAAATGCTATTATTTTCTTTTCCTTAATATTTCTCATTTTCTTTTTCTTTTAGTATTTTAATTTCTTCCCTAATGATATTTGTCTTATTTCTTAAAATCACCTTTTCCCCTTTTAAGTTCCTTTTTACTTCTTTTTTAATTTATTCAATTCAAAAAACTATTTATGTTTTTTTAAAGATTCCTCTATTATGTCCATATAAAATCATAAATTTTTATTTCATGAAACTCCTACTCAAGATTATCCTTTTTATTTCTTATTTGAAGTAGAGTTTTCCATGTTTTGTTGTTGTAGTAAAGGTAGACTCAATAAAGAGGACTCTTAGATGTTGATCATTTACTCAGAGGAGTGTTGACAAGAGCTAGAAAATTGTGCATTGATTGATTAATATTTTTTAAAATCTATTTTCTTATGATTAAGGTCCTAATGAAGGTATGTGCATTGTGTTCTTTCTATGTAATTTTTTACGTTTGGAAGGTAAGAGCATATTGTTTGTACTTCGTTAGACGGAAATTAATTACTGTAACTTTGTCTTACGCTAATTTTTATCAAGGTTCAAACACTACTATTGATGGATTAGAAAATTTGAATATATATCTAATATTGAAATAAGGCTATTTTATGATATTCTTTTACTGTACAAAGAACCATTTATGTTTCTTCAGAGTTCTGATTAAGATACTAAGGAAGATGTGTTTTTGATACTTTAAAAAGACTATTAAGTTGGATAGAGGAAGGAAAAGAGAAAAAGAAGAAAAAGTTACTGAAATGTAAAACAGATACTACAATAAAAGATAGATGCAAAATTAAAAATATGAATATTTATTTAGATAATGATGAAAATTAGAGGAAAAACAACAATAATGAGTGAATAAAATTGACACCTCTCTTTGGCCAAGAATATTGTTAAAATTATTATGATACAAAAAAGAATTGTGTTAATTATTATTTCTGCATTCATTTTTGTTCTCTATTGTATAAATCTAAATGTTTATAAATAAAGCATTGTAAGACTTTTTAGAAATGATCATTAGAGTTTGAAAAATTGTGCAATAATTTCGTTTTTTTCTTAATAATTTAGATCATAAGAATGATGTTATACGAGTTTTTTATTATCCTAAGTTTAGAACTTTTTTTGGTCTAAGTAACAACTTATGACTTTGTTGGAAGTCATATAATTACTGACCAAACATTTCTCTTTACGAAATAACTTATACTTTGGATGTATAATACATATGCTCATATTATATATATATTTCTTCTATATATTATTTTCTCATAAAACTATTGACATCTTGTCATCTTTTTAACTTCTCAGTTCCCTAGTTCTTATTAACCAAAAGTGCCTTTTGCAACTGTAGGTTCACTTCCCAGTTTAAGGATGAAATTAAATTACCTCGGGGATCTATCATTGAACTCTCCAGAGATCATGACTACATACTCCACACAACAAGTAAGATGATTTATTTGCGCTGGTAGTATTTTGGAAATGAACAAGTTCCGTCTTTTTCCACTTTTTCTACAATGTTCATATTTCGATTTGATATGAATCTTTTGAAGTGAAGACTCTCAATCTGTCAGTGTAAACGCCCACAGGACGTGCATGTGTGTGTGTGTTTTGAGAAAAGATAAAATGTTATAGCTATCACTTGCTCAAATTATTGAAGAGCTATTGAATAGATACATAAGACATTAATTTATTTAGTCATTTCCCTAATAAGGTTGGCTTTCAAAGCAGTATGTTAGTGGCTACAATGAAGGGAACTTATTTCATCAAGTGAGTTCTATACAAGAACAATACCATAAGTATCCTAATTACACCGTCAGTTGGCACATTTATACCCTTACATTTCCTTTGTGGGAAGTGGCTAAATATTTTCCTGAATTTGATTACAGAAGTCATGCTGGAAATTATGCTTGTGTAGATTTCACCAATCGACCATCCCTATTCTCTTTTATACAGATATAGATTTTCTGGTCTTTACCGTCTTCACTGTCTATAAAACCAAAAGAAGAAATAGAAATTGTTATGTGTTAGCTGTTGAAAATATTCTTCGCCAAGAGACCAGTGATGATTTTTATTATCAGCTGTTAGCTCTTGAAAATATGCTTCCCCAAGATACTATTGATGATTTTCATTACCAATGGCTGATACACCTCTGTCACAGTGACTAATAAATAAGTTAAAGACATTCCATATTAAAAAAAAGACTTAAGTTAAACAGCATCAAAGTATTAGTTGAGATTTGTTCTACATGCATTTTATGTAAGAGACTGATGAGCTAAAAAAAAGACTTACATTAAACAGCATCAAAGTACTAGTTGTTTGCTTAAAGTTTGCTCTTGCATCAATCACTTAGATGAAGCTTAGGTTCTGTTTATTTTTCTTTTGTAGTTGATGGAAAGGAAGTGGGAAGCATACAAAGCAAACTCTTATGCAGATCAATCCTAGACCTATATATTGGTGATGAGTCATTTGATCACAAAGCCAATGAAGATGTCGAGTCGAACTTGGCTTCTCTACTTCACAAGTAGCTACTTCTTTAGCATAAAGAGAATTTTATCAACACGAGGAATCAAGTTGTGGTGATTTATACTTAACGCATGTTAGCTTCTATTGGTTGGATGATTCTCTTTAAATAGTTGAACTAGAGAATTAATCTCTTGCAAACTGAACTTAGATCTATGTTTTATATGCTGATGAGTGGTTTTCTCTACTCCTGTAATATTTTGCTTT</genome_strand>
        <mrna_strand>GGACGCTCAAACCATAGTAAATAAAAAATAAAAAATGGCTTCTCTTCGTTTTCCATTCTTGTTTCCTCAGCCCCACAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATAACTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCCTTTGTGGGGTTCTGTTTCTCTAGCAGATAACTCAGCTCCGGTCACTGAATCGAGGACCGGAATGGCATTCCCCTCAATTCTGAAAGATACTCAGCGACTCCTTGGAATTGGGCTGCGTAAAAAGGCGGTTTTTGGATTGAAAAACATTGATGTCTATGCTTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTATGCTGATGATGTTGATGTAAAGAGGTATCTGGCTGAGAAGCATGGACGGCGCTCTGTTTCTGAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGAAAACAATATACGCATGACTATCAGGCTTCAAATAGTCTATGGCAGGCTAAGCATTAATTCTGTGCGCAGTGCTTTCGAAGAATCTGTTGGCAGCAGATTACATAAGTTTGGGGGATGTGATAATAAGGAATTGCTTCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACTTCCCAGTTTAAGGATGAAATTAAATTACCTCGGGGATCTATCATTGAACTCTCCAGAGATCATGACTACATACTCCACACAACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGGAAAGGAAGTGGGAAGCATACAAAGCAAACTCTTATGCAGATCAATCCTAGACCTATATATTGGTGATGAGTCATTTGATCACAAAGCCAATGAAGATGTCGAGTCGAACTTGGCTTCTCTACTTCACAAGTAGCTACTTCTTTAGCATAAAGAGAATTTTATCAACACGAGGAATCAAGTTGTGGTGATTTATACTTAACGCATGTTAGCTTCTATTGGTTGGATGATTCTCTTTAAATAGTTGAACTAGAGAATTAATCTCTTGCAAACTGAACTTAGATCTATGTTTTATATGCTGATGAGTGGTTTTCTCTAAAACAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731123" ref_strand="+" ref_description="SGN-E731123 [LA26AH04]">
      <seq>aaaaaataaaaaatggcttctcttcgttttccattcttgtttcctcagccccacaagactccgtcttccgccacttcagatgctccatctcgctccttctccaccgtcgctgtcgccgtcgcgtccggaggttcagccctcgctgccgccggagcgatcattgccatatctcaaagccccaaaaatccgtttctggaaaatgctatgaattttctactttccaatttctcacctaacaaaaatcattcatcccctttgtggggttctgtttctctagcagataactcagctccggtcactgaatcgaggaccggaatggcattcccctcaattctgaaagatactcagcgactccttggaattgggctgcgtaaaaaggcggtttttggattgaaaaacattgatgtctatgcttatggtgtgtatgctgatgatgttgatgtaaagaggtatctggctgagaagcatggacggcgctctgtttctgaactgcagcaaaaggaagagttgagaaatcatctcatggaaaacaatatacgcatgactatcaggcttcaaatagtctatggcaggctaagcattaattctgtgcgcagtgctttcgaagaatctgttggcagcagattacataagtttgggggatgtgataataaggaattgcttcaaaggttcacttcccagtttaaggatgaaattaaattacctcggggatctatcattgaactctccagagatcatgactacatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72845" stop="77177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73145" g_stop="73562" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73563" i_stop="74670" i_length="1108">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74671" g_stop="74920" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="668" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74921" i_stop="76797" i_length="1877">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76798" g_stop="76877" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="748" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E731123" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73145" e_stop="73562"/>
          <exon e_start="74671" e_stop="74920"/>
          <exon e_start="76798" e_stop="76877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATAAAAAATGGCTTCTCTTCGTTTTCCATTCTTGTTTCCTCAGCCCCACAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATAACTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCCTTTGTGGGGTTCTGTTTCTCTAGCAGATAACTCAGCTCCGGTCACTGAATCGAGGACCGGAATGGCATTCCCCTCAATTCTGAAAGATACTCAGCGACTCCTTGGAATTGGGCTGCGTAAAAAGGCGGTTTTTGGATTGAAAAACATTGATGTCTATGCTTATGGTACTACATTGTCACTGCAATTTACTTAATTGATTTTGCTCTTTATCAATTTATGTTTCTGTCTCTTCTGCAAATGTTGTTATGCTGTAGCTGAGGTTCTTAATTTTTGTGATCCTTGTGTGGAGCACAGATGCTCAAATATATAAAATGAATTCCAATTCTATGGCAATAGGAAGTTATGGAGGACACAGATAAGGGTAGAAGGCTATAGGTAACTGTGTGTTGTCTCACTTATCCTTCCATACTAGTAAATAGTAATTGTAGCATTACATTTTTTTGCTATAGAATTTATACCTTTTTTATGTTGAGAATGTATTTTATCGGCTTCTTCACTTCTGTTATTCTTTTCCCGTGCTTCTTTGTTATTTTTTTTCTTGATCCAAGGGTATATGGAAAACAATCTCTCTACTTTCCAAGTTAGGGGTAGTACACACTACTCTCCCTGTCAGTTGTCACAACTCAATTCATGCTCTACCATTTATAGCTGTTCATGTGAGATCGTGTGGGCTTATCAATTGTTAACAGCTTGTATAGGCTTATCGATTCATGCTTACTATACATGTTACTTGGATTAATTTTTTGTAGCAACAAATACAGTTTTTTGCACCGTCAGTGCCAGTGGTGGAGCCAGGAAGTTATACAAGGGATTCAAAAAAATAATAGGATTCTCATACAAGAGATTGAACATAGGTCTTAAAGTAGTTGTGCAACCCCTTTGCCACTTTACTAGAATTTTGCCTTCTATCGAGGGGATGCAATAGTATCAAGGGGTTTCAATAGTGAAATAATACTAATATACAATTCATTTTTGCTCTATTTGCTCAATGTAAATTTTTTAACGAGGGGAAGTCAATTGAATCTCCTTTCTGCAACGTAGTTCCGTCCCTGGTCAGTTCATAAAAATTAAACCTGTGGTGGTATCATATTTGAGAATCTCATTGCCGTCTCTAGTGGACCTTCCTTTATATGATGGGGGGATATGCATTATAGCACTCTCTGTCTCCTTTTGAAAGTTTGAGTGTCTGCATTTCAAAGTAAAACTCATAAAAGTGATGTTTACTTTGAATATGGCCTTTATCTAATGTGATATCAATATGGCATTCTCTAGGTGTGTATGCTGATGATGTTGATGTAAAGAGGTATCTGGCTGAGAAGCATGGACGGCGCTCTGTTTCTGAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGAAAACAATATACGCATGACTATCAGGCTTCAAATAGTCTATGGCAGGCTAAGCATTAATTCTGTGCGCAGTGCTTTCGAAGAATCTGTTGGCAGCAGATTACATAAGTTTGGGGGATGTGATAATAAGGAATTGCTTCAAAGGTAATTCCTTAGCCTCATATTATTCATATCTTATTCAACCTTTTCTCGATTAATTACCATATCACAACAGGGGAACAAGCCTGCCAAAGCTGGGATGAAGCACTCCATTTGCTTGCAGTCTAAATTATTATGTTTTCGATATCATAGTCTTTAACATTATTACTGGACTCTTTGCCCAACTGCGATCAATTATCACTCAGCTACATACGTCACATCTTTTCTTGAGTAGAGTTATTGAGCTGTGGACAGGTTAACCCACAAGATATTTTTTGGAAATTGAAACTTCATTGTTTCTCAATCTTTCAAACTTTTACTGCCTCCTTCCAATCTCTCTCTCTCTATATAAAGGAGAATATTAGACATGTTGACGCGGCATGCCTAAAAGCTATTTATCTTTTTTTTGTGGGTTTTTTTGGCCATTTTTCAAATTTTAAAATACAAAAAATTCTCCTAACTATTAAAGATAGTCACATTTAATTTTTTCTTTATCAGTAGTCATATTTAATTTATTTTATCATTAAATGCTATTATTTTCTTTTCCTTAATATTTCTCATTTTCTTTTTCTTTTAGTATTTTAATTTCTTCCCTAATGATATTTGTCTTATTTCTTAAAATCACCTTTTCCCCTTTTAAGTTCCTTTTTACTTCTTTTTTAATTTATTCAATTCAAAAAACTATTTATGTTTTTTTAAAGATTCCTCTATTATGTCCATATAAAATCATAAATTTTTATTTCATGAAACTCCTACTCAAGATTATCCTTTTTATTTCTTATTTGAAGTAGAGTTTTCCATGTTTTGTTGTTGTAGTAAAGGTAGACTCAATAAAGAGGACTCTTAGATGTTGATCATTTACTCAGAGGAGTGTTGACAAGAGCTAGAAAATTGTGCATTGATTGATTAATATTTTTTAAAATCTATTTTCTTATGATTAAGGTCCTAATGAAGGTATGTGCATTGTGTTCTTTCTATGTAATTTTTTACGTTTGGAAGGTAAGAGCATATTGTTTGTACTTCGTTAGACGGAAATTAATTACTGTAACTTTGTCTTACGCTAATTTTTATCAAGGTTCAAACACTACTATTGATGGATTAGAAAATTTGAATATATATCTAATATTGAAATAAGGCTATTTTATGATATTCTTTTACTGTACAAAGAACCATTTATGTTTCTTCAGAGTTCTGATTAAGATACTAAGGAAGATGTGTTTTTGATACTTTAAAAAGACTATTAAGTTGGATAGAGGAAGGAAAAGAGAAAAAGAAGAAAAAGTTACTGAAATGTAAAACAGATACTACAATAAAAGATAGATGCAAAATTAAAAATATGAATATTTATTTAGATAATGATGAAAATTAGAGGAAAAACAACAATAATGAGTGAATAAAATTGACACCTCTCTTTGGCCAAGAATATTGTTAAAATTATTATGATACAAAAAAGAATTGTGTTAATTATTATTTCTGCATTCATTTTTGTTCTCTATTGTATAAATCTAAATGTTTATAAATAAAGCATTGTAAGACTTTTTAGAAATGATCATTAGAGTTTGAAAAATTGTGCAATAATTTCGTTTTTTTCTTAATAATTTAGATCATAAGAATGATGTTATACGAGTTTTTTATTATCCTAAGTTTAGAACTTTTTTTGGTCTAAGTAACAACTTATGACTTTGTTGGAAGTCATATAATTACTGACCAAACATTTCTCTTTACGAAATAACTTATACTTTGGATGTATAATACATATGCTCATATTATATATATATTTCTTCTATATATTATTTTCTCATAAAACTATTGACATCTTGTCATCTTTTTAACTTCTCAGTTCCCTAGTTCTTATTAACCAAAAGTGCCTTTTGCAACTGTAGGTTCACTTCCCAGTTTAAGGATGAAATTAAATTACCTCGGGGATCTATCATTGAACTCTCCAGAGATCATGACTACATAC</genome_strand>
        <mrna_strand>AAAAAATAAAAAATGGCTTCTCTTCGTTTTCCATTCTTGTTTCCTCAGCCCCACAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATATCTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCCTTTGTGGGGTTCTGTTTCTCTAGCAGATAACTCAGCTCCGGTCACTGAATCGAGGACCGGAATGGCATTCCCCTCAATTCTGAAAGATACTCAGCGACTCCTTGGAATTGGGCTGCGTAAAAAGGCGGTTTTTGGATTGAAAAACATTGATGTCTATGCTTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTATGCTGATGATGTTGATGTAAAGAGGTATCTGGCTGAGAAGCATGGACGGCGCTCTGTTTCTGAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGAAAACAATATACGCATGACTATCAGGCTTCAAATAGTCTATGGCAGGCTAAGCATTAATTCTGTGCGCAGTGCTTTCGAAGAATCTGTTGGCAGCAGATTACATAAGTTTGGGGGATGTGATAATAAGGAATTGCTTCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACTTCCCAGTTTAAGGATGAAATTAAATTACCTCGGGGATCTATCATTGAACTCTCCAGAGATCATGACTACATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728893" ref_strand="+" ref_description="SGN-E728893 [LA19BC01]">
      <seq>aaaaaataaaaaatggcttctctatcgttttccattcttgttcctcagccccacaagactccgtcttccgccacttcagatgctccatctcgctccttctccaccgtcgctgtcgccgccgcgtccggaggttcagccctcgctgccgccggagcgatcattgccatatctcagagccccaaaaatccgtttctggaaaatgctatgaattttctactttccaatttctcacctaacaaaaatcattcatcccctttgtggggttctgtttctctagcagataactcagctccggtcactgaatcgaggaccggaatggcattcccctcaattctgaaagatactcagcgactccttggaattgggctgcgtaaaaaggcggtttttggattgaaaaacattgatgtctatgcttatggtgtgtatgctgatgatgttgatgtaaagaggtatctggctgagaagcatggacggcgctctgtttctgaactgcagcaaaaggaggagttgagaaatcatctcatggaaaacaatatacgcatgactatcaggcttcaaatagtctatggcaggctaagcattaattctgtgcgcagtgctttcgaagaatctgatggcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72845" stop="75173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73145" g_stop="73562" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73563" i_stop="74670" i_length="1108">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74671" g_stop="74873" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="621" r_length="203" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E728893" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73145" e_stop="73562"/>
          <exon e_start="74671" e_stop="74873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATAAAAAATGGCTTCTCT-TCGTTTTCCATTCTTGTTTCCTCAGCCCCACAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATAACTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCCTTTGTGGGGTTCTGTTTCTCTAGCAGATAACTCAGCTCCGGTCACTGAATCGAGGACCGGAATGGCATTCCCCTCAATTCTGAAAGATACTCAGCGACTCCTTGGAATTGGGCTGCGTAAAAAGGCGGTTTTTGGATTGAAAAACATTGATGTCTATGCTTATGGTACTACATTGTCACTGCAATTTACTTAATTGATTTTGCTCTTTATCAATTTATGTTTCTGTCTCTTCTGCAAATGTTGTTATGCTGTAGCTGAGGTTCTTAATTTTTGTGATCCTTGTGTGGAGCACAGATGCTCAAATATATAAAATGAATTCCAATTCTATGGCAATAGGAAGTTATGGAGGACACAGATAAGGGTAGAAGGCTATAGGTAACTGTGTGTTGTCTCACTTATCCTTCCATACTAGTAAATAGTAATTGTAGCATTACATTTTTTTGCTATAGAATTTATACCTTTTTTATGTTGAGAATGTATTTTATCGGCTTCTTCACTTCTGTTATTCTTTTCCCGTGCTTCTTTGTTATTTTTTTTCTTGATCCAAGGGTATATGGAAAACAATCTCTCTACTTTCCAAGTTAGGGGTAGTACACACTACTCTCCCTGTCAGTTGTCACAACTCAATTCATGCTCTACCATTTATAGCTGTTCATGTGAGATCGTGTGGGCTTATCAATTGTTAACAGCTTGTATAGGCTTATCGATTCATGCTTACTATACATGTTACTTGGATTAATTTTTTGTAGCAACAAATACAGTTTTTTGCACCGTCAGTGCCAGTGGTGGAGCCAGGAAGTTATACAAGGGATTCAAAAAAATAATAGGATTCTCATACAAGAGATTGAACATAGGTCTTAAAGTAGTTGTGCAACCCCTTTGCCACTTTACTAGAATTTTGCCTTCTATCGAGGGGATGCAATAGTATCAAGGGGTTTCAATAGTGAAATAATACTAATATACAATTCATTTTTGCTCTATTTGCTCAATGTAAATTTTTTAACGAGGGGAAGTCAATTGAATCTCCTTTCTGCAACGTAGTTCCGTCCCTGGTCAGTTCATAAAAATTAAACCTGTGGTGGTATCATATTTGAGAATCTCATTGCCGTCTCTAGTGGACCTTCCTTTATATGATGGGGGGATATGCATTATAGCACTCTCTGTCTCCTTTTGAAAGTTTGAGTGTCTGCATTTCAAAGTAAAACTCATAAAAGTGATGTTTACTTTGAATATGGCCTTTATCTAATGTGATATCAATATGGCATTCTCTAGGTGTGTATGCTGATGATGTTGATGTAAAGAGGTATCTGGCTGAGAAGCATGGACGGCGCTCTGTTTCTGAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGAAAACAATATACGCATGACTATCAGGCTTCAAATAGTCTATGGCAGGCTAAGCATTAATTCTGTGCGCAGTGCTTTCGAAGAATCTGTTGGCAGC</genome_strand>
        <mrna_strand>AAAAAATAAAAAATGGCTTCTCTATCGTTTTCCATTCTTGTT-CCTCAGCCCCACAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGCCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATATCTCAGAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCCTTTGTGGGGTTCTGTTTCTCTAGCAGATAACTCAGCTCCGGTCACTGAATCGAGGACCGGAATGGCATTCCCCTCAATTCTGAAAGATACTCAGCGACTCCTTGGAATTGGGCTGCGTAAAAAGGCGGTTTTTGGATTGAAAAACATTGATGTCTATGCTTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTATGCTGATGATGTTGATGTAAAGAGGTATCTGGCTGAGAAGCATGGACGGCGCTCTGTTTCTGAACTGCAGCAAAAGGAGGAGTTGAGAAATCATCTCATGGAAAACAATATACGCATGACTATCAGGCTTCAAATAGTCTATGGCAGGCTAAGCATTAATTCTGTGCGCAGTGCTTTCGAAGAATCTGATGGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283677" ref_strand="+" ref_description="SGN-E283677 [cLES-1-J12]">
      <seq>aaataaaaaatggcttctcttcgttttccattcttgtttcctcagccccacaagactccgtcttccgccacttcagatgctccatctcgctccttctccaccgtcgctgtcgccgtcgcgtccggaggttcagccctcgctgccgccggagcgatcattgccataactcaaagccccaaaaatccgtttctggaaaatgctatgaattttctactttccaatttctcacctaacaaaaatcattcatcccctttgtggggttctgtttctctagcagataactcagctccggtcactgaatcgaggaccggaatggcattcccctcaattctgaaagatactcagcgactccttggaattgggctgcgtaaaaaggcggtttttggattgaaaaacattgatgtctatgcttatggtgtgtatgctgatgatgttgatgtaaagaggtatctggctgagaagcatggacggcgctctgtttctgaactgcagcaaaaggaagagttgagaaatcatctcatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72848" stop="75079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73148" g_stop="73562" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73563" i_stop="74670" i_length="1108">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74671" g_stop="74779" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="524" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E283677" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73148" e_stop="73562"/>
          <exon e_start="74671" e_stop="74779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAAAAATGGCTTCTCTTCGTTTTCCATTCTTGTTTCCTCAGCCCCACAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATAACTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCCTTTGTGGGGTTCTGTTTCTCTAGCAGATAACTCAGCTCCGGTCACTGAATCGAGGACCGGAATGGCATTCCCCTCAATTCTGAAAGATACTCAGCGACTCCTTGGAATTGGGCTGCGTAAAAAGGCGGTTTTTGGATTGAAAAACATTGATGTCTATGCTTATGGTACTACATTGTCACTGCAATTTACTTAATTGATTTTGCTCTTTATCAATTTATGTTTCTGTCTCTTCTGCAAATGTTGTTATGCTGTAGCTGAGGTTCTTAATTTTTGTGATCCTTGTGTGGAGCACAGATGCTCAAATATATAAAATGAATTCCAATTCTATGGCAATAGGAAGTTATGGAGGACACAGATAAGGGTAGAAGGCTATAGGTAACTGTGTGTTGTCTCACTTATCCTTCCATACTAGTAAATAGTAATTGTAGCATTACATTTTTTTGCTATAGAATTTATACCTTTTTTATGTTGAGAATGTATTTTATCGGCTTCTTCACTTCTGTTATTCTTTTCCCGTGCTTCTTTGTTATTTTTTTTCTTGATCCAAGGGTATATGGAAAACAATCTCTCTACTTTCCAAGTTAGGGGTAGTACACACTACTCTCCCTGTCAGTTGTCACAACTCAATTCATGCTCTACCATTTATAGCTGTTCATGTGAGATCGTGTGGGCTTATCAATTGTTAACAGCTTGTATAGGCTTATCGATTCATGCTTACTATACATGTTACTTGGATTAATTTTTTGTAGCAACAAATACAGTTTTTTGCACCGTCAGTGCCAGTGGTGGAGCCAGGAAGTTATACAAGGGATTCAAAAAAATAATAGGATTCTCATACAAGAGATTGAACATAGGTCTTAAAGTAGTTGTGCAACCCCTTTGCCACTTTACTAGAATTTTGCCTTCTATCGAGGGGATGCAATAGTATCAAGGGGTTTCAATAGTGAAATAATACTAATATACAATTCATTTTTGCTCTATTTGCTCAATGTAAATTTTTTAACGAGGGGAAGTCAATTGAATCTCCTTTCTGCAACGTAGTTCCGTCCCTGGTCAGTTCATAAAAATTAAACCTGTGGTGGTATCATATTTGAGAATCTCATTGCCGTCTCTAGTGGACCTTCCTTTATATGATGGGGGGATATGCATTATAGCACTCTCTGTCTCCTTTTGAAAGTTTGAGTGTCTGCATTTCAAAGTAAAACTCATAAAAGTGATGTTTACTTTGAATATGGCCTTTATCTAATGTGATATCAATATGGCATTCTCTAGGTGTGTATGCTGATGATGTTGATGTAAAGAGGTATCTGGCTGAGAAGCATGGACGGCGCTCTGTTTCTGAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGA</genome_strand>
        <mrna_strand>AAATAAAAAATGGCTTCTCTTCGTTTTCCATTCTTGTTTCCTCAGCCCCACAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATAACTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCCTTTGTGGGGTTCTGTTTCTCTAGCAGATAACTCAGCTCCGGTCACTGAATCGAGGACCGGAATGGCATTCCCCTCAATTCTGAAAGATACTCAGCGACTCCTTGGAATTGGGCTGCGTAAAAAGGCGGTTTTTGGATTGAAAAACATTGATGTCTATGCTTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTATGCTGATGATGTTGATGTAAAGAGGTATCTGGCTGAGAAGCATGGACGGCGCTCTGTTTCTGAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731936" ref_strand="+" ref_description="SGN-E731936 [LA28CE02]">
      <seq>gcttctcttcgttttccattcttgtttcctcagccccacaagactccgtcttccgccacttcagatgctccatctcgctccttctccaccgtcgctgtcgccgtcgcgtccggaggttcagccctcgctgccgccggagcgatcattgccatatctcaaagccccaaaaatccgtttctggaaaatgctatgaattttctactttccaatttctcacctaacaaaaatcattcatcccctttgtggggttctgtttctctagcagataactcagctccggtcactgaatcgaggaccggaatggcattcccctcaattctgaaagatactcagcgactccttggaattgggctgcgtaaaaaggcggtttttggattgaaaaacattgatgtctatgcttatggtgtgtatgctgatgatgttgatgtaaagaggtatctggctgagaagcatggacggcgctctgtttctgaactgcagcaaaaggaagagttgagaaatcatctcatggaaaacaatatacgcatgactatcaggcttcaaatagtctatggcaggctaagcattaattctgtgcgcagtgctttcgaagaatctgttggcagcagattacataagtttgggggatgtgataataaggaattgcttcaaaggttcacttcccagtttaaggatgaaattanattacctcggggatctatcattgaactctccagagatcatgactacatactccacacaacaattgatggaaaggaagtgggaagcatancaagcaaactcttatgcagatcaaatctaaaactatatattggtgatgagtcatttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72860" stop="78217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73160" g_stop="73562" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73563" i_stop="74670" i_length="1108">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74671" g_stop="74920" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="653" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74921" i_stop="76797" i_length="1877">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76798" g_stop="76889" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="745" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76890" i_stop="77831" i_length="942">
            <donor d_prob="0.779" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77832" g_stop="77917" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="831" r_length="86" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E731936" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73160" e_stop="73562"/>
          <exon e_start="74671" e_stop="74920"/>
          <exon e_start="76798" e_stop="76889"/>
          <exon e_start="77832" e_stop="77917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTCTTCGTTTTCCATTCTTGTTTCCTCAGCCCCACAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATAACTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCCTTTGTGGGGTTCTGTTTCTCTAGCAGATAACTCAGCTCCGGTCACTGAATCGAGGACCGGAATGGCATTCCCCTCAATTCTGAAAGATACTCAGCGACTCCTTGGAATTGGGCTGCGTAAAAAGGCGGTTTTTGGATTGAAAAACATTGATGTCTATGCTTATGGTACTACATTGTCACTGCAATTTACTTAATTGATTTTGCTCTTTATCAATTTATGTTTCTGTCTCTTCTGCAAATGTTGTTATGCTGTAGCTGAGGTTCTTAATTTTTGTGATCCTTGTGTGGAGCACAGATGCTCAAATATATAAAATGAATTCCAATTCTATGGCAATAGGAAGTTATGGAGGACACAGATAAGGGTAGAAGGCTATAGGTAACTGTGTGTTGTCTCACTTATCCTTCCATACTAGTAAATAGTAATTGTAGCATTACATTTTTTTGCTATAGAATTTATACCTTTTTTATGTTGAGAATGTATTTTATCGGCTTCTTCACTTCTGTTATTCTTTTCCCGTGCTTCTTTGTTATTTTTTTTCTTGATCCAAGGGTATATGGAAAACAATCTCTCTACTTTCCAAGTTAGGGGTAGTACACACTACTCTCCCTGTCAGTTGTCACAACTCAATTCATGCTCTACCATTTATAGCTGTTCATGTGAGATCGTGTGGGCTTATCAATTGTTAACAGCTTGTATAGGCTTATCGATTCATGCTTACTATACATGTTACTTGGATTAATTTTTTGTAGCAACAAATACAGTTTTTTGCACCGTCAGTGCCAGTGGTGGAGCCAGGAAGTTATACAAGGGATTCAAAAAAATAATAGGATTCTCATACAAGAGATTGAACATAGGTCTTAAAGTAGTTGTGCAACCCCTTTGCCACTTTACTAGAATTTTGCCTTCTATCGAGGGGATGCAATAGTATCAAGGGGTTTCAATAGTGAAATAATACTAATATACAATTCATTTTTGCTCTATTTGCTCAATGTAAATTTTTTAACGAGGGGAAGTCAATTGAATCTCCTTTCTGCAACGTAGTTCCGTCCCTGGTCAGTTCATAAAAATTAAACCTGTGGTGGTATCATATTTGAGAATCTCATTGCCGTCTCTAGTGGACCTTCCTTTATATGATGGGGGGATATGCATTATAGCACTCTCTGTCTCCTTTTGAAAGTTTGAGTGTCTGCATTTCAAAGTAAAACTCATAAAAGTGATGTTTACTTTGAATATGGCCTTTATCTAATGTGATATCAATATGGCATTCTCTAGGTGTGTATGCTGATGATGTTGATGTAAAGAGGTATCTGGCTGAGAAGCATGGACGGCGCTCTGTTTCTGAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGAAAACAATATACGCATGACTATCAGGCTTCAAATAGTCTATGGCAGGCTAAGCATTAATTCTGTGCGCAGTGCTTTCGAAGAATCTGTTGGCAGCAGATTACATAAGTTTGGGGGATGTGATAATAAGGAATTGCTTCAAAGGTAATTCCTTAGCCTCATATTATTCATATCTTATTCAACCTTTTCTCGATTAATTACCATATCACAACAGGGGAACAAGCCTGCCAAAGCTGGGATGAAGCACTCCATTTGCTTGCAGTCTAAATTATTATGTTTTCGATATCATAGTCTTTAACATTATTACTGGACTCTTTGCCCAACTGCGATCAATTATCACTCAGCTACATACGTCACATCTTTTCTTGAGTAGAGTTATTGAGCTGTGGACAGGTTAACCCACAAGATATTTTTTGGAAATTGAAACTTCATTGTTTCTCAATCTTTCAAACTTTTACTGCCTCCTTCCAATCTCTCTCTCTCTATATAAAGGAGAATATTAGACATGTTGACGCGGCATGCCTAAAAGCTATTTATCTTTTTTTTGTGGGTTTTTTTGGCCATTTTTCAAATTTTAAAATACAAAAAATTCTCCTAACTATTAAAGATAGTCACATTTAATTTTTTCTTTATCAGTAGTCATATTTAATTTATTTTATCATTAAATGCTATTATTTTCTTTTCCTTAATATTTCTCATTTTCTTTTTCTTTTAGTATTTTAATTTCTTCCCTAATGATATTTGTCTTATTTCTTAAAATCACCTTTTCCCCTTTTAAGTTCCTTTTTACTTCTTTTTTAATTTATTCAATTCAAAAAACTATTTATGTTTTTTTAAAGATTCCTCTATTATGTCCATATAAAATCATAAATTTTTATTTCATGAAACTCCTACTCAAGATTATCCTTTTTATTTCTTATTTGAAGTAGAGTTTTCCATGTTTTGTTGTTGTAGTAAAGGTAGACTCAATAAAGAGGACTCTTAGATGTTGATCATTTACTCAGAGGAGTGTTGACAAGAGCTAGAAAATTGTGCATTGATTGATTAATATTTTTTAAAATCTATTTTCTTATGATTAAGGTCCTAATGAAGGTATGTGCATTGTGTTCTTTCTATGTAATTTTTTACGTTTGGAAGGTAAGAGCATATTGTTTGTACTTCGTTAGACGGAAATTAATTACTGTAACTTTGTCTTACGCTAATTTTTATCAAGGTTCAAACACTACTATTGATGGATTAGAAAATTTGAATATATATCTAATATTGAAATAAGGCTATTTTATGATATTCTTTTACTGTACAAAGAACCATTTATGTTTCTTCAGAGTTCTGATTAAGATACTAAGGAAGATGTGTTTTTGATACTTTAAAAAGACTATTAAGTTGGATAGAGGAAGGAAAAGAGAAAAAGAAGAAAAAGTTACTGAAATGTAAAACAGATACTACAATAAAAGATAGATGCAAAATTAAAAATATGAATATTTATTTAGATAATGATGAAAATTAGAGGAAAAACAACAATAATGAGTGAATAAAATTGACACCTCTCTTTGGCCAAGAATATTGTTAAAATTATTATGATACAAAAAAGAATTGTGTTAATTATTATTTCTGCATTCATTTTTGTTCTCTATTGTATAAATCTAAATGTTTATAAATAAAGCATTGTAAGACTTTTTAGAAATGATCATTAGAGTTTGAAAAATTGTGCAATAATTTCGTTTTTTTCTTAATAATTTAGATCATAAGAATGATGTTATACGAGTTTTTTATTATCCTAAGTTTAGAACTTTTTTTGGTCTAAGTAACAACTTATGACTTTGTTGGAAGTCATATAATTACTGACCAAACATTTCTCTTTACGAAATAACTTATACTTTGGATGTATAATACATATGCTCATATTATATATATATTTCTTCTATATATTATTTTCTCATAAAACTATTGACATCTTGTCATCTTTTTAACTTCTCAGTTCCCTAGTTCTTATTAACCAAAAGTGCCTTTTGCAACTGTAGGTTCACTTCCCAGTTTAAGGATGAAATTAAATTACCTCGGGGATCTATCATTGAACTCTCCAGAGATCATGACTACATACTCCACACAACAAGTAAGATGATTTATTTGCGCTGGTAGTATTTTGGAAATGAACAAGTTCCGTCTTTTTCCACTTTTTCTACAATGTTCATATTTCGATTTGATATGAATCTTTTGAAGTGAAGACTCTCAATCTGTCAGTGTAAACGCCCACAGGACGTGCATGTGTGTGTGTGTTTTGAGAAAAGATAAAATGTTATAGCTATCACTTGCTCAAATTATTGAAGAGCTATTGAATAGATACATAAGACATTAATTTATTTAGTCATTTCCCTAATAAGGTTGGCTTTCAAAGCAGTATGTTAGTGGCTACAATGAAGGGAACTTATTTCATCAAGTGAGTTCTATACAAGAACAATACCATAAGTATCCTAATTACACCGTCAGTTGGCACATTTATACCCTTACATTTCCTTTGTGGGAAGTGGCTAAATATTTTCCTGAATTTGATTACAGAAGTCATGCTGGAAATTATGCTTGTGTAGATTTCACCAATCGACCATCCCTATTCTCTTTTATACAGATATAGATTTTCTGGTCTTTACCGTCTTCACTGTCTATAAAACCAAAAGAAGAAATAGAAATTGTTATGTGTTAGCTGTTGAAAATATTCTTCGCCAAGAGACCAGTGATGATTTTTATTATCAGCTGTTAGCTCTTGAAAATATGCTTCCCCAAGATACTATTGATGATTTTCATTACCAATGGCTGATACACCTCTGTCACAGTGACTAATAAATAAGTTAAAGACATTCCATATTAAAAAAAAGACTTAAGTTAAACAGCATCAAAGTATTAGTTGAGATTTGTTCTACATGCATTTTATGTAAGAGACTGATGAGCTAAAAAAAAGACTTACATTAAACAGCATCAAAGTACTAGTTGTTTGCTTAAAGTTTGCTCTTGCATCAATCACTTAGATGAAGCTTAGGTTCTGTTTATTTTTCTTTTGTAGTTGATGGAAAGGAAGTGGGAAGCATACAAAGCAAACTCTTATGCAGATCAATCCTAGACCTATATATTGGTGATGAGTCATTTGAT</genome_strand>
        <mrna_strand>GCTTCTCTTCGTTTTCCATTCTTGTTTCCTCAGCCCCACAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATATCTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCCTTTGTGGGGTTCTGTTTCTCTAGCAGATAACTCAGCTCCGGTCACTGAATCGAGGACCGGAATGGCATTCCCCTCAATTCTGAAAGATACTCAGCGACTCCTTGGAATTGGGCTGCGTAAAAAGGCGGTTTTTGGATTGAAAAACATTGATGTCTATGCTTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTATGCTGATGATGTTGATGTAAAGAGGTATCTGGCTGAGAAGCATGGACGGCGCTCTGTTTCTGAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGAAAACAATATACGCATGACTATCAGGCTTCAAATAGTCTATGGCAGGCTAAGCATTAATTCTGTGCGCAGTGCTTTCGAAGAATCTGTTGGCAGCAGATTACATAAGTTTGGGGGATGTGATAATAAGGAATTGCTTCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACTTCCCAGTTTAAGGATGAAATTANATTACCTCGGGGATCTATCATTGAACTCTCCAGAGATCATGACTACATACTCCACACAACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGGAAAGGAAGTGGGAAGCATANCAAGCAAACTCTTATGCAGATCAAATCTAAAACTATATATTGGTGATGAGTCATTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709273" ref_strand="+" ref_description="SGN-E709273 [FA51AH09]">
      <seq>cgctagactccgtcttccgccacttcagatgctccatctcgctccttctccaccgtcgctgtcgccgtcgcgtccggaggttcagccctcgctgccgccggagcgatcattgccatatctcaaagccccaaaaatccgtttctggaaaatgctatgaattttctactttccaatttctcacctaacaaaaatcattcatcccctttgtggggttctgtttctctagcagataactcagctccggtcactgaatcgaggaccggaatggcattcccctcaattctgaaagatactcagcgactccttggaattgggctgcgtaaaaaggcggtttttggattgaaaaacattgatgtctatgcttatggtgtgtatgctgatgatgttgatgtaaagaggtatctggctgagaagcatggacggcgctctgtttctgaactgcagcaaaaggaagagttgagaaatcatctcatggaaaacaatatacgcatgactatcaggcttcaaatagtctatggcaggctaagcattaattctgtgcgcagtgctttcgaagaatctgttggcagcagattacataagtttgggggatgtgataataaggaattgcttcaaaggttcacttcccagtttaaggatgaaattaaattacctcggggatctatcattgaactctccagagatcatgactacatactccacacaacaattgatggaaaggaagtgggaagcatacaaagcaaactcttatgcagatcaatcctagacctatatattggtgatgagtcatttgatcacaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72896" stop="78225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73196" g_stop="73562" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73563" i_stop="74670" i_length="1108">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74671" g_stop="74920" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="617" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74921" i_stop="76797" i_length="1877">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76798" g_stop="76889" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="709" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76890" i_stop="77831" i_length="942">
            <donor d_prob="0.779" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77832" g_stop="77925" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="803" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E709273" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73196" e_stop="73562"/>
          <exon e_start="74671" e_stop="74920"/>
          <exon e_start="76798" e_stop="76889"/>
          <exon e_start="77832" e_stop="77925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATAACTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCCTTTGTGGGGTTCTGTTTCTCTAGCAGATAACTCAGCTCCGGTCACTGAATCGAGGACCGGAATGGCATTCCCCTCAATTCTGAAAGATACTCAGCGACTCCTTGGAATTGGGCTGCGTAAAAAGGCGGTTTTTGGATTGAAAAACATTGATGTCTATGCTTATGGTACTACATTGTCACTGCAATTTACTTAATTGATTTTGCTCTTTATCAATTTATGTTTCTGTCTCTTCTGCAAATGTTGTTATGCTGTAGCTGAGGTTCTTAATTTTTGTGATCCTTGTGTGGAGCACAGATGCTCAAATATATAAAATGAATTCCAATTCTATGGCAATAGGAAGTTATGGAGGACACAGATAAGGGTAGAAGGCTATAGGTAACTGTGTGTTGTCTCACTTATCCTTCCATACTAGTAAATAGTAATTGTAGCATTACATTTTTTTGCTATAGAATTTATACCTTTTTTATGTTGAGAATGTATTTTATCGGCTTCTTCACTTCTGTTATTCTTTTCCCGTGCTTCTTTGTTATTTTTTTTCTTGATCCAAGGGTATATGGAAAACAATCTCTCTACTTTCCAAGTTAGGGGTAGTACACACTACTCTCCCTGTCAGTTGTCACAACTCAATTCATGCTCTACCATTTATAGCTGTTCATGTGAGATCGTGTGGGCTTATCAATTGTTAACAGCTTGTATAGGCTTATCGATTCATGCTTACTATACATGTTACTTGGATTAATTTTTTGTAGCAACAAATACAGTTTTTTGCACCGTCAGTGCCAGTGGTGGAGCCAGGAAGTTATACAAGGGATTCAAAAAAATAATAGGATTCTCATACAAGAGATTGAACATAGGTCTTAAAGTAGTTGTGCAACCCCTTTGCCACTTTACTAGAATTTTGCCTTCTATCGAGGGGATGCAATAGTATCAAGGGGTTTCAATAGTGAAATAATACTAATATACAATTCATTTTTGCTCTATTTGCTCAATGTAAATTTTTTAACGAGGGGAAGTCAATTGAATCTCCTTTCTGCAACGTAGTTCCGTCCCTGGTCAGTTCATAAAAATTAAACCTGTGGTGGTATCATATTTGAGAATCTCATTGCCGTCTCTAGTGGACCTTCCTTTATATGATGGGGGGATATGCATTATAGCACTCTCTGTCTCCTTTTGAAAGTTTGAGTGTCTGCATTTCAAAGTAAAACTCATAAAAGTGATGTTTACTTTGAATATGGCCTTTATCTAATGTGATATCAATATGGCATTCTCTAGGTGTGTATGCTGATGATGTTGATGTAAAGAGGTATCTGGCTGAGAAGCATGGACGGCGCTCTGTTTCTGAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGAAAACAATATACGCATGACTATCAGGCTTCAAATAGTCTATGGCAGGCTAAGCATTAATTCTGTGCGCAGTGCTTTCGAAGAATCTGTTGGCAGCAGATTACATAAGTTTGGGGGATGTGATAATAAGGAATTGCTTCAAAGGTAATTCCTTAGCCTCATATTATTCATATCTTATTCAACCTTTTCTCGATTAATTACCATATCACAACAGGGGAACAAGCCTGCCAAAGCTGGGATGAAGCACTCCATTTGCTTGCAGTCTAAATTATTATGTTTTCGATATCATAGTCTTTAACATTATTACTGGACTCTTTGCCCAACTGCGATCAATTATCACTCAGCTACATACGTCACATCTTTTCTTGAGTAGAGTTATTGAGCTGTGGACAGGTTAACCCACAAGATATTTTTTGGAAATTGAAACTTCATTGTTTCTCAATCTTTCAAACTTTTACTGCCTCCTTCCAATCTCTCTCTCTCTATATAAAGGAGAATATTAGACATGTTGACGCGGCATGCCTAAAAGCTATTTATCTTTTTTTTGTGGGTTTTTTTGGCCATTTTTCAAATTTTAAAATACAAAAAATTCTCCTAACTATTAAAGATAGTCACATTTAATTTTTTCTTTATCAGTAGTCATATTTAATTTATTTTATCATTAAATGCTATTATTTTCTTTTCCTTAATATTTCTCATTTTCTTTTTCTTTTAGTATTTTAATTTCTTCCCTAATGATATTTGTCTTATTTCTTAAAATCACCTTTTCCCCTTTTAAGTTCCTTTTTACTTCTTTTTTAATTTATTCAATTCAAAAAACTATTTATGTTTTTTTAAAGATTCCTCTATTATGTCCATATAAAATCATAAATTTTTATTTCATGAAACTCCTACTCAAGATTATCCTTTTTATTTCTTATTTGAAGTAGAGTTTTCCATGTTTTGTTGTTGTAGTAAAGGTAGACTCAATAAAGAGGACTCTTAGATGTTGATCATTTACTCAGAGGAGTGTTGACAAGAGCTAGAAAATTGTGCATTGATTGATTAATATTTTTTAAAATCTATTTTCTTATGATTAAGGTCCTAATGAAGGTATGTGCATTGTGTTCTTTCTATGTAATTTTTTACGTTTGGAAGGTAAGAGCATATTGTTTGTACTTCGTTAGACGGAAATTAATTACTGTAACTTTGTCTTACGCTAATTTTTATCAAGGTTCAAACACTACTATTGATGGATTAGAAAATTTGAATATATATCTAATATTGAAATAAGGCTATTTTATGATATTCTTTTACTGTACAAAGAACCATTTATGTTTCTTCAGAGTTCTGATTAAGATACTAAGGAAGATGTGTTTTTGATACTTTAAAAAGACTATTAAGTTGGATAGAGGAAGGAAAAGAGAAAAAGAAGAAAAAGTTACTGAAATGTAAAACAGATACTACAATAAAAGATAGATGCAAAATTAAAAATATGAATATTTATTTAGATAATGATGAAAATTAGAGGAAAAACAACAATAATGAGTGAATAAAATTGACACCTCTCTTTGGCCAAGAATATTGTTAAAATTATTATGATACAAAAAAGAATTGTGTTAATTATTATTTCTGCATTCATTTTTGTTCTCTATTGTATAAATCTAAATGTTTATAAATAAAGCATTGTAAGACTTTTTAGAAATGATCATTAGAGTTTGAAAAATTGTGCAATAATTTCGTTTTTTTCTTAATAATTTAGATCATAAGAATGATGTTATACGAGTTTTTTATTATCCTAAGTTTAGAACTTTTTTTGGTCTAAGTAACAACTTATGACTTTGTTGGAAGTCATATAATTACTGACCAAACATTTCTCTTTACGAAATAACTTATACTTTGGATGTATAATACATATGCTCATATTATATATATATTTCTTCTATATATTATTTTCTCATAAAACTATTGACATCTTGTCATCTTTTTAACTTCTCAGTTCCCTAGTTCTTATTAACCAAAAGTGCCTTTTGCAACTGTAGGTTCACTTCCCAGTTTAAGGATGAAATTAAATTACCTCGGGGATCTATCATTGAACTCTCCAGAGATCATGACTACATACTCCACACAACAAGTAAGATGATTTATTTGCGCTGGTAGTATTTTGGAAATGAACAAGTTCCGTCTTTTTCCACTTTTTCTACAATGTTCATATTTCGATTTGATATGAATCTTTTGAAGTGAAGACTCTCAATCTGTCAGTGTAAACGCCCACAGGACGTGCATGTGTGTGTGTGTTTTGAGAAAAGATAAAATGTTATAGCTATCACTTGCTCAAATTATTGAAGAGCTATTGAATAGATACATAAGACATTAATTTATTTAGTCATTTCCCTAATAAGGTTGGCTTTCAAAGCAGTATGTTAGTGGCTACAATGAAGGGAACTTATTTCATCAAGTGAGTTCTATACAAGAACAATACCATAAGTATCCTAATTACACCGTCAGTTGGCACATTTATACCCTTACATTTCCTTTGTGGGAAGTGGCTAAATATTTTCCTGAATTTGATTACAGAAGTCATGCTGGAAATTATGCTTGTGTAGATTTCACCAATCGACCATCCCTATTCTCTTTTATACAGATATAGATTTTCTGGTCTTTACCGTCTTCACTGTCTATAAAACCAAAAGAAGAAATAGAAATTGTTATGTGTTAGCTGTTGAAAATATTCTTCGCCAAGAGACCAGTGATGATTTTTATTATCAGCTGTTAGCTCTTGAAAATATGCTTCCCCAAGATACTATTGATGATTTTCATTACCAATGGCTGATACACCTCTGTCACAGTGACTAATAAATAAGTTAAAGACATTCCATATTAAAAAAAAGACTTAAGTTAAACAGCATCAAAGTATTAGTTGAGATTTGTTCTACATGCATTTTATGTAAGAGACTGATGAGCTAAAAAAAAGACTTACATTAAACAGCATCAAAGTACTAGTTGTTTGCTTAAAGTTTGCTCTTGCATCAATCACTTAGATGAAGCTTAGGTTCTGTTTATTTTTCTTTTGTAGTTGATGGAAAGGAAGTGGGAAGCATACAAAGCAAACTCTTATGCAGATCAATCCTAGACCTATATATTGGTGATGAGTCATTTGATCACAAAGC</genome_strand>
        <mrna_strand>CGCTAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATATCTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCCTTTGTGGGGTTCTGTTTCTCTAGCAGATAACTCAGCTCCGGTCACTGAATCGAGGACCGGAATGGCATTCCCCTCAATTCTGAAAGATACTCAGCGACTCCTTGGAATTGGGCTGCGTAAAAAGGCGGTTTTTGGATTGAAAAACATTGATGTCTATGCTTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTATGCTGATGATGTTGATGTAAAGAGGTATCTGGCTGAGAAGCATGGACGGCGCTCTGTTTCTGAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGAAAACAATATACGCATGACTATCAGGCTTCAAATAGTCTATGGCAGGCTAAGCATTAATTCTGTGCGCAGTGCTTTCGAAGAATCTGTTGGCAGCAGATTACATAAGTTTGGGGGATGTGATAATAAGGAATTGCTTCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACTTCCCAGTTTAAGGATGAAATTAAATTACCTCGGGGATCTATCATTGAACTCTCCAGAGATCATGACTACATACTCCACACAACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGGAAAGGAAGTGGGAAGCATACAAAGCAAACTCTTATGCAGATCAATCCTAGACCTATATATTGGTGATGAGTCATTTGATCACAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336299" ref_strand="+" ref_description="SGN-E336299 [cTOE-10-M9]">
      <seq>cacaagactccgtcttccgccacttcagatgctccatctcgctccttctccaccgtcgctgtcgccgtcgcgtccggaggatcagccctcgctgccgccggagcgatcattgccataactcaaagccccaaaaatccgtttctggaaaatgctatgaattttctactttccaatttctcacctaacaaaaatcattcatcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72896" stop="73698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73196" g_stop="73398" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E336299" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>203</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73196" e_stop="73398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATAACTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCC</genome_strand>
        <mrna_strand>CACAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGATCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATAACTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705669" ref_strand="+" ref_description="SGN-E705669 [FA27DC03]">
      <seq>caagactccgtcttccgccacttcagatgctccatctcgctccttctccaccgtcgctgtcgccgtcgcgtccggaggttcagccctcgctgccgccggagcgatcattgccatatctcaaagccccaaaaatccgtttctggaaaatgctatgaattttctactttccaatttctcacctaacaaaaatcattcatcccctttgtggggttctgtttctctagcagataactcagctccggtcactgaatcgaggaccggaatggcattcccctcaattctgaaagatactcagcgactccttggaattgggctgcgtaaaaaggcggtttttggattgaaaaacattgatgtctatgcttatggtgtgtatgctgatgatgttgatgtaaagaggtatctggctgagaagcatggacggcgctctgtttctgaactgcagcaaaaggaagagttgagaaatcatctcatggaaaacaatatacgcatgactatcaggcttcaaatagtctatggcaggctaagcattaattctgtgcgcagtgctttcgaagaatctgttggcagcagattacataagtttgggggatgtgataataaggaattgcttcaaaggttcacttcccagtttaaggatgaaattaaattacctcggggatctatcattgaactctccagagatcatgactacatactccacacaacaattgatggaaaggaagtgggaagcatacaaagcaaactcttatgcagatcaatcctagacctatatattggtgatgagtcatttgatcacaaagccaatgaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72898" stop="78236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73198" g_stop="73562" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73563" i_stop="74670" i_length="1108">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74671" g_stop="74920" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="615" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74921" i_stop="76797" i_length="1877">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76798" g_stop="76889" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="707" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76890" i_stop="77831" i_length="942">
            <donor d_prob="0.779" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77832" g_stop="77936" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="812" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E705669" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73198" e_stop="73562"/>
          <exon e_start="74671" e_stop="74920"/>
          <exon e_start="76798" e_stop="76889"/>
          <exon e_start="77832" e_stop="77936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATAACTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCCTTTGTGGGGTTCTGTTTCTCTAGCAGATAACTCAGCTCCGGTCACTGAATCGAGGACCGGAATGGCATTCCCCTCAATTCTGAAAGATACTCAGCGACTCCTTGGAATTGGGCTGCGTAAAAAGGCGGTTTTTGGATTGAAAAACATTGATGTCTATGCTTATGGTACTACATTGTCACTGCAATTTACTTAATTGATTTTGCTCTTTATCAATTTATGTTTCTGTCTCTTCTGCAAATGTTGTTATGCTGTAGCTGAGGTTCTTAATTTTTGTGATCCTTGTGTGGAGCACAGATGCTCAAATATATAAAATGAATTCCAATTCTATGGCAATAGGAAGTTATGGAGGACACAGATAAGGGTAGAAGGCTATAGGTAACTGTGTGTTGTCTCACTTATCCTTCCATACTAGTAAATAGTAATTGTAGCATTACATTTTTTTGCTATAGAATTTATACCTTTTTTATGTTGAGAATGTATTTTATCGGCTTCTTCACTTCTGTTATTCTTTTCCCGTGCTTCTTTGTTATTTTTTTTCTTGATCCAAGGGTATATGGAAAACAATCTCTCTACTTTCCAAGTTAGGGGTAGTACACACTACTCTCCCTGTCAGTTGTCACAACTCAATTCATGCTCTACCATTTATAGCTGTTCATGTGAGATCGTGTGGGCTTATCAATTGTTAACAGCTTGTATAGGCTTATCGATTCATGCTTACTATACATGTTACTTGGATTAATTTTTTGTAGCAACAAATACAGTTTTTTGCACCGTCAGTGCCAGTGGTGGAGCCAGGAAGTTATACAAGGGATTCAAAAAAATAATAGGATTCTCATACAAGAGATTGAACATAGGTCTTAAAGTAGTTGTGCAACCCCTTTGCCACTTTACTAGAATTTTGCCTTCTATCGAGGGGATGCAATAGTATCAAGGGGTTTCAATAGTGAAATAATACTAATATACAATTCATTTTTGCTCTATTTGCTCAATGTAAATTTTTTAACGAGGGGAAGTCAATTGAATCTCCTTTCTGCAACGTAGTTCCGTCCCTGGTCAGTTCATAAAAATTAAACCTGTGGTGGTATCATATTTGAGAATCTCATTGCCGTCTCTAGTGGACCTTCCTTTATATGATGGGGGGATATGCATTATAGCACTCTCTGTCTCCTTTTGAAAGTTTGAGTGTCTGCATTTCAAAGTAAAACTCATAAAAGTGATGTTTACTTTGAATATGGCCTTTATCTAATGTGATATCAATATGGCATTCTCTAGGTGTGTATGCTGATGATGTTGATGTAAAGAGGTATCTGGCTGAGAAGCATGGACGGCGCTCTGTTTCTGAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGAAAACAATATACGCATGACTATCAGGCTTCAAATAGTCTATGGCAGGCTAAGCATTAATTCTGTGCGCAGTGCTTTCGAAGAATCTGTTGGCAGCAGATTACATAAGTTTGGGGGATGTGATAATAAGGAATTGCTTCAAAGGTAATTCCTTAGCCTCATATTATTCATATCTTATTCAACCTTTTCTCGATTAATTACCATATCACAACAGGGGAACAAGCCTGCCAAAGCTGGGATGAAGCACTCCATTTGCTTGCAGTCTAAATTATTATGTTTTCGATATCATAGTCTTTAACATTATTACTGGACTCTTTGCCCAACTGCGATCAATTATCACTCAGCTACATACGTCACATCTTTTCTTGAGTAGAGTTATTGAGCTGTGGACAGGTTAACCCACAAGATATTTTTTGGAAATTGAAACTTCATTGTTTCTCAATCTTTCAAACTTTTACTGCCTCCTTCCAATCTCTCTCTCTCTATATAAAGGAGAATATTAGACATGTTGACGCGGCATGCCTAAAAGCTATTTATCTTTTTTTTGTGGGTTTTTTTGGCCATTTTTCAAATTTTAAAATACAAAAAATTCTCCTAACTATTAAAGATAGTCACATTTAATTTTTTCTTTATCAGTAGTCATATTTAATTTATTTTATCATTAAATGCTATTATTTTCTTTTCCTTAATATTTCTCATTTTCTTTTTCTTTTAGTATTTTAATTTCTTCCCTAATGATATTTGTCTTATTTCTTAAAATCACCTTTTCCCCTTTTAAGTTCCTTTTTACTTCTTTTTTAATTTATTCAATTCAAAAAACTATTTATGTTTTTTTAAAGATTCCTCTATTATGTCCATATAAAATCATAAATTTTTATTTCATGAAACTCCTACTCAAGATTATCCTTTTTATTTCTTATTTGAAGTAGAGTTTTCCATGTTTTGTTGTTGTAGTAAAGGTAGACTCAATAAAGAGGACTCTTAGATGTTGATCATTTACTCAGAGGAGTGTTGACAAGAGCTAGAAAATTGTGCATTGATTGATTAATATTTTTTAAAATCTATTTTCTTATGATTAAGGTCCTAATGAAGGTATGTGCATTGTGTTCTTTCTATGTAATTTTTTACGTTTGGAAGGTAAGAGCATATTGTTTGTACTTCGTTAGACGGAAATTAATTACTGTAACTTTGTCTTACGCTAATTTTTATCAAGGTTCAAACACTACTATTGATGGATTAGAAAATTTGAATATATATCTAATATTGAAATAAGGCTATTTTATGATATTCTTTTACTGTACAAAGAACCATTTATGTTTCTTCAGAGTTCTGATTAAGATACTAAGGAAGATGTGTTTTTGATACTTTAAAAAGACTATTAAGTTGGATAGAGGAAGGAAAAGAGAAAAAGAAGAAAAAGTTACTGAAATGTAAAACAGATACTACAATAAAAGATAGATGCAAAATTAAAAATATGAATATTTATTTAGATAATGATGAAAATTAGAGGAAAAACAACAATAATGAGTGAATAAAATTGACACCTCTCTTTGGCCAAGAATATTGTTAAAATTATTATGATACAAAAAAGAATTGTGTTAATTATTATTTCTGCATTCATTTTTGTTCTCTATTGTATAAATCTAAATGTTTATAAATAAAGCATTGTAAGACTTTTTAGAAATGATCATTAGAGTTTGAAAAATTGTGCAATAATTTCGTTTTTTTCTTAATAATTTAGATCATAAGAATGATGTTATACGAGTTTTTTATTATCCTAAGTTTAGAACTTTTTTTGGTCTAAGTAACAACTTATGACTTTGTTGGAAGTCATATAATTACTGACCAAACATTTCTCTTTACGAAATAACTTATACTTTGGATGTATAATACATATGCTCATATTATATATATATTTCTTCTATATATTATTTTCTCATAAAACTATTGACATCTTGTCATCTTTTTAACTTCTCAGTTCCCTAGTTCTTATTAACCAAAAGTGCCTTTTGCAACTGTAGGTTCACTTCCCAGTTTAAGGATGAAATTAAATTACCTCGGGGATCTATCATTGAACTCTCCAGAGATCATGACTACATACTCCACACAACAAGTAAGATGATTTATTTGCGCTGGTAGTATTTTGGAAATGAACAAGTTCCGTCTTTTTCCACTTTTTCTACAATGTTCATATTTCGATTTGATATGAATCTTTTGAAGTGAAGACTCTCAATCTGTCAGTGTAAACGCCCACAGGACGTGCATGTGTGTGTGTGTTTTGAGAAAAGATAAAATGTTATAGCTATCACTTGCTCAAATTATTGAAGAGCTATTGAATAGATACATAAGACATTAATTTATTTAGTCATTTCCCTAATAAGGTTGGCTTTCAAAGCAGTATGTTAGTGGCTACAATGAAGGGAACTTATTTCATCAAGTGAGTTCTATACAAGAACAATACCATAAGTATCCTAATTACACCGTCAGTTGGCACATTTATACCCTTACATTTCCTTTGTGGGAAGTGGCTAAATATTTTCCTGAATTTGATTACAGAAGTCATGCTGGAAATTATGCTTGTGTAGATTTCACCAATCGACCATCCCTATTCTCTTTTATACAGATATAGATTTTCTGGTCTTTACCGTCTTCACTGTCTATAAAACCAAAAGAAGAAATAGAAATTGTTATGTGTTAGCTGTTGAAAATATTCTTCGCCAAGAGACCAGTGATGATTTTTATTATCAGCTGTTAGCTCTTGAAAATATGCTTCCCCAAGATACTATTGATGATTTTCATTACCAATGGCTGATACACCTCTGTCACAGTGACTAATAAATAAGTTAAAGACATTCCATATTAAAAAAAAGACTTAAGTTAAACAGCATCAAAGTATTAGTTGAGATTTGTTCTACATGCATTTTATGTAAGAGACTGATGAGCTAAAAAAAAGACTTACATTAAACAGCATCAAAGTACTAGTTGTTTGCTTAAAGTTTGCTCTTGCATCAATCACTTAGATGAAGCTTAGGTTCTGTTTATTTTTCTTTTGTAGTTGATGGAAAGGAAGTGGGAAGCATACAAAGCAAACTCTTATGCAGATCAATCCTAGACCTATATATTGGTGATGAGTCATTTGATCACAAAGCCAATGAAGATG</genome_strand>
        <mrna_strand>CAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATATCTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCCTTTGTGGGGTTCTGTTTCTCTAGCAGATAACTCAGCTCCGGTCACTGAATCGAGGACCGGAATGGCATTCCCCTCAATTCTGAAAGATACTCAGCGACTCCTTGGAATTGGGCTGCGTAAAAAGGCGGTTTTTGGATTGAAAAACATTGATGTCTATGCTTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTATGCTGATGATGTTGATGTAAAGAGGTATCTGGCTGAGAAGCATGGACGGCGCTCTGTTTCTGAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGAAAACAATATACGCATGACTATCAGGCTTCAAATAGTCTATGGCAGGCTAAGCATTAATTCTGTGCGCAGTGCTTTCGAAGAATCTGTTGGCAGCAGATTACATAAGTTTGGGGGATGTGATAATAAGGAATTGCTTCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACTTCCCAGTTTAAGGATGAAATTAAATTACCTCGGGGATCTATCATTGAACTCTCCAGAGATCATGACTACATACTCCACACAACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGGAAAGGAAGTGGGAAGCATACAAAGCAAACTCTTATGCAGATCAATCCTAGACCTATATATTGGTGATGAGTCATTTGATCACAAAGCCAATGAAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540739" ref_strand="+" ref_description="SGN-E540739 [TUS-61-C19](-)">
      <seq>gaactgcagcaaaaggaagagttgagaaatcatctcatggaaaacaatatacgcatgactatcaggcttcaaatagtctatggcaggctaagcattaattctgtgcgcagtgctttcgaagaatctgttggcagcagattacataagtttgggggatgtgataataaggaattgcttcaaaggttcacttcccagtttaaggatgaaattaaattccctcggggatctatcattgaactctccagagatcatgactacatactccccacaacaattgatggaaaggaagtgggaagcatacaaagcaaacttttatgcagatcaatcctagacctatatattggtgatgagtcatttgatcacaaagccaatgaagatgtcgagtcgaacttggcttttttacttcacaagtagctacttttttagcataaagagaattttatcaacccggggaatcaagttgtggtgatttatacttaacgcatgttagcttctattggttggatgattctctttaaatagttgaactagagaattaatttcttgcaaactgaacttagatctatgttttatatgctgatgaggggttttctctactcctgtaatattttgctttgcaatttttatagcatgattgaaataagtatgttggcttggttaccaaattttttttatttacctcattgaaatgcatcttggagtgtttcctgctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74439" stop="115125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74739" g_stop="74920" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74921" i_stop="76797" i_length="1877">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76798" g_stop="76889" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="274" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76890" i_stop="77831" i_length="942">
            <donor d_prob="0.779" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77832" g_stop="78272" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="715" r_length="441" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78273" i_stop="79110" i_length="838">
            <donor d_prob="0.834" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.57"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79111" g_stop="79156" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="761" r_length="46" r_score="0.565"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E540739" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74739" e_stop="74920"/>
          <exon e_start="76798" e_stop="76889"/>
          <exon e_start="77832" e_stop="78272"/>
          <exon e_start="79111" e_stop="79156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGAAAACAATATACGCATGACTATCAGGCTTCAAATAGTCTATGGCAGGCTAAGCATTAATTCTGTGCGCAGTGCTTTCGAAGAATCTGTTGGCAGCAGATTACATAAGTTTGGGGGATGTGATAATAAGGAATTGCTTCAAAGGTAATTCCTTAGCCTCATATTATTCATATCTTATTCAACCTTTTCTCGATTAATTACCATATCACAACAGGGGAACAAGCCTGCCAAAGCTGGGATGAAGCACTCCATTTGCTTGCAGTCTAAATTATTATGTTTTCGATATCATAGTCTTTAACATTATTACTGGACTCTTTGCCCAACTGCGATCAATTATCACTCAGCTACATACGTCACATCTTTTCTTGAGTAGAGTTATTGAGCTGTGGACAGGTTAACCCACAAGATATTTTTTGGAAATTGAAACTTCATTGTTTCTCAATCTTTCAAACTTTTACTGCCTCCTTCCAATCTCTCTCTCTCTATATAAAGGAGAATATTAGACATGTTGACGCGGCATGCCTAAAAGCTATTTATCTTTTTTTTGTGGGTTTTTTTGGCCATTTTTCAAATTTTAAAATACAAAAAATTCTCCTAACTATTAAAGATAGTCACATTTAATTTTTTCTTTATCAGTAGTCATATTTAATTTATTTTATCATTAAATGCTATTATTTTCTTTTCCTTAATATTTCTCATTTTCTTTTTCTTTTAGTATTTTAATTTCTTCCCTAATGATATTTGTCTTATTTCTTAAAATCACCTTTTCCCCTTTTAAGTTCCTTTTTACTTCTTTTTTAATTTATTCAATTCAAAAAACTATTTATGTTTTTTTAAAGATTCCTCTATTATGTCCATATAAAATCATAAATTTTTATTTCATGAAACTCCTACTCAAGATTATCCTTTTTATTTCTTATTTGAAGTAGAGTTTTCCATGTTTTGTTGTTGTAGTAAAGGTAGACTCAATAAAGAGGACTCTTAGATGTTGATCATTTACTCAGAGGAGTGTTGACAAGAGCTAGAAAATTGTGCATTGATTGATTAATATTTTTTAAAATCTATTTTCTTATGATTAAGGTCCTAATGAAGGTATGTGCATTGTGTTCTTTCTATGTAATTTTTTACGTTTGGAAGGTAAGAGCATATTGTTTGTACTTCGTTAGACGGAAATTAATTACTGTAACTTTGTCTTACGCTAATTTTTATCAAGGTTCAAACACTACTATTGATGGATTAGAAAATTTGAATATATATCTAATATTGAAATAAGGCTATTTTATGATATTCTTTTACTGTACAAAGAACCATTTATGTTTCTTCAGAGTTCTGATTAAGATACTAAGGAAGATGTGTTTTTGATACTTTAAAAAGACTATTAAGTTGGATAGAGGAAGGAAAAGAGAAAAAGAAGAAAAAGTTACTGAAATGTAAAACAGATACTACAATAAAAGATAGATGCAAAATTAAAAATATGAATATTTATTTAGATAATGATGAAAATTAGAGGAAAAACAACAATAATGAGTGAATAAAATTGACACCTCTCTTTGGCCAAGAATATTGTTAAAATTATTATGATACAAAAAAGAATTGTGTTAATTATTATTTCTGCATTCATTTTTGTTCTCTATTGTATAAATCTAAATGTTTATAAATAAAGCATTGTAAGACTTTTTAGAAATGATCATTAGAGTTTGAAAAATTGTGCAATAATTTCGTTTTTTTCTTAATAATTTAGATCATAAGAATGATGTTATACGAGTTTTTTATTATCCTAAGTTTAGAACTTTTTTTGGTCTAAGTAACAACTTATGACTTTGTTGGAAGTCATATAATTACTGACCAAACATTTCTCTTTACGAAATAACTTATACTTTGGATGTATAATACATATGCTCATATTATATATATATTTCTTCTATATATTATTTTCTCATAAAACTATTGACATCTTGTCATCTTTTTAACTTCTCAGTTCCCTAGTTCTTATTAACCAAAAGTGCCTTTTGCAACTGTAGGTTCACTTCCCAGTTTAAGGATGAAATTAAATTACCTCGGGGATCTATCATTGAACTCTCCAGAGATCATGACTACATACTCCACACAACAAGTAAGATGATTTATTTGCGCTGGTAGTATTTTGGAAATGAACAAGTTCCGTCTTTTTCCACTTTTTCTACAATGTTCATATTTCGATTTGATATGAATCTTTTGAAGTGAAGACTCTCAATCTGTCAGTGTAAACGCCCACAGGACGTGCATGTGTGTGTGTGTTTTGAGAAAAGATAAAATGTTATAGCTATCACTTGCTCAAATTATTGAAGAGCTATTGAATAGATACATAAGACATTAATTTATTTAGTCATTTCCCTAATAAGGTTGGCTTTCAAAGCAGTATGTTAGTGGCTACAATGAAGGGAACTTATTTCATCAAGTGAGTTCTATACAAGAACAATACCATAAGTATCCTAATTACACCGTCAGTTGGCACATTTATACCCTTACATTTCCTTTGTGGGAAGTGGCTAAATATTTTCCTGAATTTGATTACAGAAGTCATGCTGGAAATTATGCTTGTGTAGATTTCACCAATCGACCATCCCTATTCTCTTTTATACAGATATAGATTTTCTGGTCTTTACCGTCTTCACTGTCTATAAAACCAAAAGAAGAAATAGAAATTGTTATGTGTTAGCTGTTGAAAATATTCTTCGCCAAGAGACCAGTGATGATTTTTATTATCAGCTGTTAGCTCTTGAAAATATGCTTCCCCAAGATACTATTGATGATTTTCATTACCAATGGCTGATACACCTCTGTCACAGTGACTAATAAATAAGTTAAAGACATTCCATATTAAAAAAAAGACTTAAGTTAAACAGCATCAAAGTATTAGTTGAGATTTGTTCTACATGCATTTTATGTAAGAGACTGATGAGCTAAAAAAAAGACTTACATTAAACAGCATCAAAGTACTAGTTGTTTGCTTAAAGTTTGCTCTTGCATCAATCACTTAGATGAAGCTTAGGTTCTGTTTATTTTTCTTTTGTAGTTGATGGAAAGGAAGTGGGAAGCATACAAAGCAAACTCTTATGCAGATCAATCCTAGACCTATATATTGGTGATGAGTCATTTGATCACAAAGCCAATGAAGATGTCGAGTCGAACTTGGCTTCTCTACTTCACAAGTAGCTACTTCTTTAGCATAAAGAGAATTTTATCAACACGAGGAATCAAGTTGTGGTGATTTATACTTAACGCATGTTAGCTTCTATTGGTTGGATGATTCTCTTTAAATAGTTGAACTAGAGAATTAATCTCTTGCAAACTGAACTTAGATCTATGTTTTATATGCTGATGAGTGGTTTTCTCTACTCCTGTAATATTTTGCTTTGCAATTTTTATAGCATGATTGAAATAAGTATGTTGGCTTGGTTACCAAATTTCTTTTATTTACCTCATTGAAATGCATCTTGGAGTGTTTACTGCTAAGGTTGGAGAACAACTTGTATAACCTAGTAGTGTTTACTACTAAGGTTTCTTATTATCATCTTGTTGTTGTTTATGTTTGTTCCTAGTGTCTCTTTTTCACTGTTTGCTCAGCCATGGTCTTTCGCAAACAACTTCTCTATTTTCTCAAAGGTAAAGGTTTGTGTACACTCTACCCTCCTCCCAAGACCCCACTTGTGGGATTACTTAGGAAACAACTTCTCTGTCACATCTGGGGATACAAATCAAACAGGAGCGTTTATTGTTTGCAGGTACATATACAGGGCATGTGGTGATGTTAATATGGATGTTGCCTAAGGGCTGCTGATCAAAATGACGTTGAGTGCCTTAAGCAACTGTGTTGAGTATGCAATTGCAGAGGTGAGTGCTGGGGTGTCAGAGGAGGATTTATGTCGGGTTTCTCCTGATAATTTCTTATCTTCTGTAGGATGAAAATGTCTGTGATGTTTGAGTAATCGGAGGCTTTCAATGCGTTGTCATTAAGAAATGCTTGGAGCCTAAACAACTACTATGTAATTGTGCATTAACACACTATAAAATATATTCACAGCACAAGCTGAGACACGCAAGGCCAATTCAAGCTGACATCTGATGTATTCTTTGATTAAATGCAAGAGTTGTGTAACCTCTCATTGCTTGTTGTGACGTTTAGTGTAGCGCATCAACTTCAGTTTCTTAGATTTAACTTACTCTCTGTATAAATGTCCTTGGTCCAAATGACAATCATCATCTCTCTGAGTTTTAAAAAATTCCCTAGCTGTATGTATGTCAATTACAATTATTTTGGATTTTGCATAATTCTAATAAATTTTCCAAACGAGAACAATAATTATTAAAGAATATAGGAAGAGCAAAACAAATTTGAGG</genome_strand>
        <mrna_strand>GAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGAAAACAATATACGCATGACTATCAGGCTTCAAATAGTCTATGGCAGGCTAAGCATTAATTCTGTGCGCAGTGCTTTCGAAGAATCTGTTGGCAGCAGATTACATAAGTTTGGGGGATGTGATAATAAGGAATTGCTTCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACTTCCCAGTTTAAGGATGAAATTAAATTCCCTCGGGGATCTATCATTGAACTCTCCAGAGATCATGACTACATACTCCCCACAACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGGAAAGGAAGTGGGAAGCATACAAAGCAAACTTTTATGCAGATCAATCCTAGACCTATATATTGGTGATGAGTCATTTGATCACAAAGCCAATGAAGATGTCGAGTCGAACTTGGCTTTTTTACTTCACAAGTAGCTACTTTTTTAGCATAAAGAGAATTTTATCAACCCGGGGAATCAAGTTGTGGTGATTTATACTTAACGCATGTTAGCTTCTATTGGTTGGATGATTCTCTTTAAATAGTTGAACTAGAGAATTAATTTCTTGCAAACTGAACTTAGATCTATGTTTTATATGCTGATGAGGGGTTTTCTCTACTCCTGTAATATTTTGCTTTGCAATTTTTATAGCATGATTGAAATAAGTATGTTGGCTTGGTTACCAAATTTTTTTTATTTACCTCATTGAAATGCATCTTGGAGTGTTTCCTGCTAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233879" ref_strand="+" ref_description="SGN-E233879 [cLEL-8-K19](-)">
      <seq>aaaaaaaaaaaactcgagactagcagagatcatgactacatactccacacaacaattgatggaaaggaagtgggaagcatacaaagcaaactcttatgcagatcaatcctagacctatatattggtgatgagtcatttgatcacaaagccaatgaagatgtcgagtcgaacttggcttctctacttcacaagtagctacttctttagcataaagagaattttatcaacacgaggaatcaagttgtggtgatttatacttaacgcatgttagcttctattggttggatgattctctttaaatagttgaactagagaattaatctcttgcaaactgaacttagatctatgttttatatgctgatgagtggttttctctactcctgtaatattttgctttgcaatttttatagcatgattgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76558" stop="115098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76861" g_stop="76889" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="55" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76890" i_stop="77831" i_length="942">
            <donor d_prob="0.779" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77832" g_stop="78204" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="428" r_length="373" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78205" i_stop="78479" i_length="275">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.491" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78480" g_stop="78486" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="435" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E233879" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76861" e_stop="76889"/>
          <exon e_start="77832" e_stop="78204"/>
          <exon e_start="78480" e_stop="78486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCATGACTACATACTCCACACAACAAGTAAGATGATTTATTTGCGCTGGTAGTATTTTGGAAATGAACAAGTTCCGTCTTTTTCCACTTTTTCTACAATGTTCATATTTCGATTTGATATGAATCTTTTGAAGTGAAGACTCTCAATCTGTCAGTGTAAACGCCCACAGGACGTGCATGTGTGTGTGTGTTTTGAGAAAAGATAAAATGTTATAGCTATCACTTGCTCAAATTATTGAAGAGCTATTGAATAGATACATAAGACATTAATTTATTTAGTCATTTCCCTAATAAGGTTGGCTTTCAAAGCAGTATGTTAGTGGCTACAATGAAGGGAACTTATTTCATCAAGTGAGTTCTATACAAGAACAATACCATAAGTATCCTAATTACACCGTCAGTTGGCACATTTATACCCTTACATTTCCTTTGTGGGAAGTGGCTAAATATTTTCCTGAATTTGATTACAGAAGTCATGCTGGAAATTATGCTTGTGTAGATTTCACCAATCGACCATCCCTATTCTCTTTTATACAGATATAGATTTTCTGGTCTTTACCGTCTTCACTGTCTATAAAACCAAAAGAAGAAATAGAAATTGTTATGTGTTAGCTGTTGAAAATATTCTTCGCCAAGAGACCAGTGATGATTTTTATTATCAGCTGTTAGCTCTTGAAAATATGCTTCCCCAAGATACTATTGATGATTTTCATTACCAATGGCTGATACACCTCTGTCACAGTGACTAATAAATAAGTTAAAGACATTCCATATTAAAAAAAAGACTTAAGTTAAACAGCATCAAAGTATTAGTTGAGATTTGTTCTACATGCATTTTATGTAAGAGACTGATGAGCTAAAAAAAAGACTTACATTAAACAGCATCAAAGTACTAGTTGTTTGCTTAAAGTTTGCTCTTGCATCAATCACTTAGATGAAGCTTAGGTTCTGTTTATTTTTCTTTTGTAGTTGATGGAAAGGAAGTGGGAAGCATACAAAGCAAACTCTTATGCAGATCAATCCTAGACCTATATATTGGTGATGAGTCATTTGATCACAAAGCCAATGAAGATGTCGAGTCGAACTTGGCTTCTCTACTTCACAAGTAGCTACTTCTTTAGCATAAAGAGAATTTTATCAACACGAGGAATCAAGTTGTGGTGATTTATACTTAACGCATGTTAGCTTCTATTGGTTGGATGATTCTCTTTAAATAGTTGAACTAGAGAATTAATCTCTTGCAAACTGAACTTAGATCTATGTTTTATATGCTGATGAGTGGTTTTCTCTACTCCTGTAATATTTTGCTTTGCAATTTTTATAGCATGATTGAAATAAGTATGTTGGCTTGGTTACCAAATTTCTTTTATTTACCTCATTGAAATGCATCTTGGAGTGTTTACTGCTAAGGTTGGAGAACAACTTGTATAACCTAGTAGTGTTTACTACTAAGGTTTCTTATTATCATCTTGTTGTTGTTTATGTTTGTTCCTAGTGTCTCTTTTTCACTGTTTGCTCAGCCATGGTCTTTCGCAAACAACTTCTCTATTTTCTCAAAGGTAAAGGTTTGTGTACACTCTACCCTCCTCCCAAGACCCCACTTGTGGGATTACTTAGGAAACAA</genome_strand>
        <mrna_strand>AGATCATGACTACATACTCCACACAACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGGAAAGGAAGTGGGAAGCATACAAAGCAAACTCTTATGCAGATCAATCCTAGACCTATATATTGGTGATGAGTCATTTGATCACAAAGCCAATGAAGATGTCGAGTCGAACTTGGCTTCTCTACTTCACAAGTAGCTACTTCTTTAGCATAAAGAGAATTTTATCAACACGAGGAATCAAGTTGTGGTGATTTATACTTAACGCATGTTAGCTTCTATTGGTTGGATGATTCTCTTTAAATAGTTGAACTAGAGAATTAATCTCTTGCAAACTGAACTTAGATCTATGTTTTATATGCTGATGAGTGGTTTTCTCTACTCCTGTAATATTTTGCTTTGCAATTTTTATAGCATGATTGAAAAAAAAAA...................................................................................................................................................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234468" ref_strand="+" ref_description="SGN-E234468 [cLEL-8-K19](-)">
      <seq>aaagcaaactcttatgcagatcaatcctagacctatatattggtgatgagtcatttgatcacaaagccaatgaagatgtcgagtcgaacttggcttctctacttcacaagtagctacttctttagcataaagagaattttatcaacacgaggaatccagttgtggtgatttatacttaacgcatgttagcttctattggttggatgattctctttaaatagttgaactagagaattaatctcttgcaaactgaacttagatctatgttttatatgctgatgagtggttttctctactcctgtaatattttgctttgcaatttttatagcatgattgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77559" stop="115098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77859" g_stop="78204" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78205" i_stop="78479" i_length="275">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.491" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78480" g_stop="78486" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="353" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E234468" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77859" e_stop="78204"/>
          <exon e_start="78480" e_stop="78486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCAAACTCTTATGCAGATCAATCCTAGACCTATATATTGGTGATGAGTCATTTGATCACAAAGCCAATGAAGATGTCGAGTCGAACTTGGCTTCTCTACTTCACAAGTAGCTACTTCTTTAGCATAAAGAGAATTTTATCAACACGAGGAATCAAGTTGTGGTGATTTATACTTAACGCATGTTAGCTTCTATTGGTTGGATGATTCTCTTTAAATAGTTGAACTAGAGAATTAATCTCTTGCAAACTGAACTTAGATCTATGTTTTATATGCTGATGAGTGGTTTTCTCTACTCCTGTAATATTTTGCTTTGCAATTTTTATAGCATGATTGAAATAAGTATGTTGGCTTGGTTACCAAATTTCTTTTATTTACCTCATTGAAATGCATCTTGGAGTGTTTACTGCTAAGGTTGGAGAACAACTTGTATAACCTAGTAGTGTTTACTACTAAGGTTTCTTATTATCATCTTGTTGTTGTTTATGTTTGTTCCTAGTGTCTCTTTTTCACTGTTTGCTCAGCCATGGTCTTTCGCAAACAACTTCTCTATTTTCTCAAAGGTAAAGGTTTGTGTACACTCTACCCTCCTCCCAAGACCCCACTTGTGGGATTACTTAGGAAACAA</genome_strand>
        <mrna_strand>AAAGCAAACTCTTATGCAGATCAATCCTAGACCTATATATTGGTGATGAGTCATTTGATCACAAAGCCAATGAAGATGTCGAGTCGAACTTGGCTTCTCTACTTCACAAGTAGCTACTTCTTTAGCATAAAGAGAATTTTATCAACACGAGGAATCCAGTTGTGGTGATTTATACTTAACGCATGTTAGCTTCTATTGGTTGGATGATTCTCTTTAAATAGTTGAACTAGAGAATTAATCTCTTGCAAACTGAACTTAGATCTATGTTTTATATGCTGATGAGTGGTTTTCTCTACTCCTGTAATATTTTGCTTTGCAATTTTTATAGCATGATTGAAAAAAAAAA...................................................................................................................................................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723916" ref_strand="+" ref_description="SGN-E723916 [FC22BG06]">
      <seq>aaaaaaataccctttgtataccaacaagcttctccaagtatatgttcaaacaaatgccttgtgcagtggtaaatctgaagcgataatctgcaaccgatggctacacagctccctggtttgttgctgaacagcgctggccttacactcaccggcgcccggtctcttagttgccggaacaatcaaccaccggcagctatctcctctgccaaccctccttctctctcttccacaattcaggttgttggttgaaaaggtgctggaggatctggcattgaaaattcaaaactttttaattcttttgaagacaatcaagaagaatatgactggattgatctagaaaccgatctttacctttggacaaaaattttacaaccagttcagtggtatcctggacatatcgcgaaaactgaaaaagagctcaaggaacagttgaaactaatggatgttgtcttagaggttcaaaatgcaagaatcccgatgcccacaattcatccacagatggattcatggcttgaaaacagaaagaggatcttggttttgaatcaagaggatatgatatcacctgctgatcggaatgttttgggcaacttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79103" stop="83107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79403" g_stop="79639" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79640" i_stop="81448" i_length="1809">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81449" g_stop="81592" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="381" r_length="144" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81593" i_stop="81700" i_length="108">
            <donor d_prob="0.796" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81701" g_stop="81817" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="498" r_length="117" r_score="0.940"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81818" i_stop="82714" i_length="897">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.986" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82715" g_stop="82807" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="592" r_length="94" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E723916" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79403" e_stop="79639"/>
          <exon e_start="81449" e_stop="81592"/>
          <exon e_start="81701" e_stop="81817"/>
          <exon e_start="82715" e_stop="82807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAATATCCTTTGTATACCAACAAGCTTCTCCAAGTATATGTTCAAACAAATGCCTTGTGCAGTGGTAAATCTGAAGCGATAATCTGCAACCGATGGCTACACAGCTCCCTGGTTTGTTGCTGAACAGCGCTGGCCTTACACTCGCCGGCGCCCGGTCTCTTAGTTGCCGGAACAATCAACCACCGGCAGCTATCTCCTCTGCCAACCCTCCTTCTCTCTCTTCCACAATTCAGGTAAACTGTATAATATTTCCTATGGTATATTTACGCTGGATACAGCCAAAGCTTGAAAGCTGAACTTTTATTTTGCCCTTTTGCTTTGAAGCAGCGTAATAACTTGTTTTATACTAGCTCTCTGAGGTGCTGCAATATCTGCATATAGTTAGTGGAGAAGTATGCACTATACAAAATTTCACTTCATTTACTTCTGTATTTAAGGTCCTAAATTAGCCAATAGTTGCATACTTCTCCATCCAACCCATAAATGAACAAACGGAGTCGTCAAGACATCTAATTTTCTGAAATTGGAACATCAATTTTTTAGACTTCTTTTTTAATTAGCAACTACATAAAAAGTACTAAAAATCCCAACTTTTTGGTATCTTTAGAACGTAAATATGTTAATTTTATTTTTAGAAAAACAACCTTTAGAAGTGCATAAAAAGCAGGATAAATAATAACTTTGTATAGTTAAAAGAAAAAAGAAACTGCTTGATCCCCTAATGGTTGCCAAAAAAAGATATTTAGATGGAGGAAGAACTTCGGAGTATTAGAGATGGAGGTGTTGAGACACAACAAACTTCAAATTTGAGACTGAGACCATGGGAAAGGGTTGTTGCTGAGAGAAGGAAACAGCATTCTCTGGTATTGCTTTAGGGAGTTTGTAAGTGTCCCTTCCAAGAGATTTTTTTTTATTATTATAGATATGAGATTGGATAAACTGGATGTGAAAATAGTTCTTGGAGAATCTATCAAATTAGGACATAGTCAAGAGGAACCAAATGTAGTGTTAATTGGATTTGTTAGAATAGGAATAGGATTATATAAAGCTATTCCTATTCTAATAGGATTGTATAAACCTATTTCTATTTCAATAGAATCATATAAACCTATTCCTATTCTAACAGGATTGTCTCTATCAGTTGTAATTGAGACAAGCCCATAATACCAGATCTTTGCTGGTAGAACTTGTGTAACCCTCAAAGTCCAGTAAAGTAGGTTCCAGAGCCTGCAATTTTGGCCTATAATGAAGGTATGATAAAGATGGTGTGAGCTGCTGAATAAAGTGTGACTTAAAGGTGAACGAGCATGAGATAACTCAAGTTCAAAGATCGAATGTCAGGGAAGAAATACAAAGTCAAGTAAAGGCAGGACATCAGATTTAAATGCAGTTAAATTATCAAATTCTTTTATATTGCAAAAAATATAAATTAGTAGTAATATAATTGTTAATACAACAGAAAAGTAAGTAGGTTTTTCAGTTTTTGGCTTTACGGCTTTAGGATTAACAATAATATATTATGGCAAAATATTATGAGGCTAATATATCTAAGATAAAAGTTGAAATATGGTGACTCTTCACTGGTTAATAGTTTACCGGATAAGGAAATTGAATCATCACCCCACACCAATAAGCTATTAATTATAAAATTATAATCCGTTAACCAACCGTTTATTCGATAACCCAATACCAATAAGCCAATTTTACGTATTGGCTACTGTTCGATTTAGAACAGCCCTAGTGCAAAACTTAACATTCATGGATTGTGGTTTATATCAGGTTTTGGTTTTTCTTTTAGGCTACAATATTCAATAGTGATGTATTTCGTAATTCATTCTCACGTGCAACACTTGGACACATAAAAATGCTCTCTTAAGTGTGTATCATATGTCATCTAAACGCTGATTAAGTTTTCTTGCTCTTATTGAACTTTTGGTCTAACTTTATTTAATCGATTTCATGAAACTTTTGGAAACTCTCATAGAAGGGTCTTTTTAACTATCCATTACACGAAGTAACATTCTTGTGAATGAACTTTTCAGGTTGTTGGTTGGAAAGGTGCTGGAGGATCTGGCAGTGAGAATTCAAAACTTTTTAATTCTTTTGAAGACAATCAAGAAGAATATGACTGGAATGATCTAGAAACCGATCTTTACCATTGGACAAAGACTTTACGACCAGTTCAGGTATGCTCAGGGTGTGGACTTGACCTTGACCTTCTGTATGTTTCAAAATTTTTATGTGTTCCCCTGTTGAATGGTTGACCTTACACTATGTGTCTATTATTTAAATAGTGGTATCCTGGTCATATCGCGAAAACTGAGAAAGAGCTCAAGGAACAGTTGAAACTAATGGATGTTGTCATAGAGGTTCGAGATGCAAGAATCCCGATGTCCACAAGTCATCCACAGGTTAGAAACTTGTTTATGCTTTGCCTGTTTACTCTTTGGCTAGATTATTGAATGTTTTGTTATATTTGCATTTTCGCTAGGGTATTGAGTGATGTGCTAGTAACCTAGCCTGCTTTCCCAACAGCTAGGTAGATGTGGCCCACTGTGCCATCCTAAACTATCTTTACCACTTAAGACTTGTTGTGTAAAAGTTGAGTGTTGCAAACAGCTTAAGAACTCAATCATTATATTTTATTTTAATTGGAGAATGTGTTTAAGAGTACTTTTTTTTTTTTTTGAGATTGGTAACTTTGTGCTTAGGAGTACATTTCACTTTTGAGATCTGAATTATGCTTGACAATTCTGATTAGAAATGGGACTGCTTGGTATTCTGCATATGGATTGCCTCTATAACACTGGCCAGCTATTTTCCGCTTAGCCTGGCCTATTCTTTCTACATCGCTTGTGATTAGTATAAACTGATACTCCATCTGAGAGTTTTCCTCGTCTGGCTTAGAAATGTGCCTATTGAATTGCAGTTTAATCACTTCAGGGATTGTGTTTTGAACTTTGGAAATTAATAATATACTTAACAAAAACTTTGATCACTTTGATGGTTTGCAGCTATAAAGACTAGATTACTCATAGGTATCACTTTGACCCTGTTCTCCTTTGGCATAGCCAAACAAGAGCAAATGAGATGTAGGAAAAATTTTCCAATGATGCAAAGAGCGTGCTATGAAGTAGATACTCAAGAATCTCGTTTGAATCAGGATAGAGTATGCATGTGCAGTCCATAATTCCTTTTCTTGACTTCAATTCAGTATACCAGACTCCTATTGCATATGAGATTCTTTTTTCGTCTCCTTTCAACTTTCATCTATTTTGTTTTGTTAGTAATTCAACTTTGATAAGCAGATGGACTCATGGCTTGGCAACAGAAAGAGGATCTTGGTTTTGAATCGAGAGGATATGATATCAACTGCTGATCGGAATG-CTTGGGCAACTTAT</genome_strand>
        <mrna_strand>AAAAAAATACCCTTTGTATACCAACAAGCTTCTCCAAGTATATGTTCAAACAAATGCCTTGTGCAGTGGTAAATCTGAAGCGATAATCTGCAACCGATGGCTACACAGCTCCCTGGTTTGTTGCTGAACAGCGCTGGCCTTACACTCACCGGCGCCCGGTCTCTTAGTTGCCGGAACAATCAACCACCGGCAGCTATCTCCTCTGCCAACCCTCCTTCTCTCTCTTCCACAATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGTTGAAAAGGTGCTGGAGGATCTGGCATTGAAAATTCAAAACTTTTTAATTCTTTTGAAGACAATCAAGAAGAATATGACTGGATTGATCTAGAAACCGATCTTTACCTTTGGACAAAAATTTTACAACCAGTTCAG............................................................................................................TGGTATCCTGGACATATCGCGAAAACTGAAAAAGAGCTCAAGGAACAGTTGAAACTAATGGATGTTGTCTTAGAGGTTCAAAATGCAAGAATCCCGATGCCCACAATTCATCCACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATTCATGGCTTGAAAACAGAAAGAGGATCTTGGTTTTGAATCAAGAGGATATGATATCACCTGCTGATCGGAATGTTTTGGGCAACTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455224" ref_strand="+" ref_description="SGN-E455224 [cSTS-25-N21]">
      <seq>aaaatatcctttgcataccaacaagccttacaaagtatatgttcaaatgccttgtgcagtggtacatctgaagcgataatctgcaaccgatggctacacagttccctggtttgttgctgaacagcgctggccttacactcgccggcggccggtctcttagttgccggaacaatcaaccaccggcagccatcgcctctgccaattccccttctctctcttccacaattcaggttgttggttggaaaggtgctggagggtctggcagtcagaattcaaaactttttaattcttttgaagacattcaagaagaatatgactggaatgatctagaaaccgatctttaccattggacaaagactttacgaccagttcagagtggtatcctggtcatatcgcgaaaactgagaaagagctcaaggaacagttgaaactaatggatgttgtcatagaggttcgagatgcaagaatcccgatgtccacaagtcatccacagtaattcaacttcgatgagcagatggactcatggcttggcaacagaaagaaggattttggttttgaatcgagaggatatgatatncaactgctgatcggaatgcttgggcaacttattatgctaatcaannggattaaagttgttttctccaatggccagcttggaatgggagcactgaatcttgggaaggttggcgaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79153" stop="83274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79406" g_stop="79639" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79640" i_stop="81448" i_length="1809">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81449" g_stop="81592" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="374" r_length="144" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81593" i_stop="81698" i_length="106">
            <donor d_prob="0.796" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81699" g_stop="81817" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="493" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81818" i_stop="82693" i_length="876">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82694" g_stop="82858" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="661" r_length="168" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82859" i_stop="82942" i_length="84">
            <donor d_prob="0.935" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82943" g_stop="82974" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="694" r_length="33" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E455224" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79406" e_stop="79639"/>
          <exon e_start="81449" e_stop="81592"/>
          <exon e_start="81699" e_stop="81817"/>
          <exon e_start="82694" e_stop="82858"/>
          <exon e_start="82943" e_stop="82974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATATCCTTTGTATACCAACAAGCTTCTCCAAGTATATGTTCAAACAAATGCCTTGTGCAGTGGTAAATCTGAAGCGATAATCTGCAACCGATGGCTACACAGCTCCCTGGTTTGTTGCTGAACAGCGCTGGCCTTACACTCGCCGGCGCCCGGTCTCTTAGTTGCCGGAACAATCAACCACCGGCAGCTATCTCCTCTGCCAACCCTCCTTCTCTCTCTTCCACAATTCAGGTAAACTGTATAATATTTCCTATGGTATATTTACGCTGGATACAGCCAAAGCTTGAAAGCTGAACTTTTATTTTGCCCTTTTGCTTTGAAGCAGCGTAATAACTTGTTTTATACTAGCTCTCTGAGGTGCTGCAATATCTGCATATAGTTAGTGGAGAAGTATGCACTATACAAAATTTCACTTCATTTACTTCTGTATTTAAGGTCCTAAATTAGCCAATAGTTGCATACTTCTCCATCCAACCCATAAATGAACAAACGGAGTCGTCAAGACATCTAATTTTCTGAAATTGGAACATCAATTTTTTAGACTTCTTTTTTAATTAGCAACTACATAAAAAGTACTAAAAATCCCAACTTTTTGGTATCTTTAGAACGTAAATATGTTAATTTTATTTTTAGAAAAACAACCTTTAGAAGTGCATAAAAAGCAGGATAAATAATAACTTTGTATAGTTAAAAGAAAAAAGAAACTGCTTGATCCCCTAATGGTTGCCAAAAAAAGATATTTAGATGGAGGAAGAACTTCGGAGTATTAGAGATGGAGGTGTTGAGACACAACAAACTTCAAATTTGAGACTGAGACCATGGGAAAGGGTTGTTGCTGAGAGAAGGAAACAGCATTCTCTGGTATTGCTTTAGGGAGTTTGTAAGTGTCCCTTCCAAGAGATTTTTTTTTATTATTATAGATATGAGATTGGATAAACTGGATGTGAAAATAGTTCTTGGAGAATCTATCAAATTAGGACATAGTCAAGAGGAACCAAATGTAGTGTTAATTGGATTTGTTAGAATAGGAATAGGATTATATAAAGCTATTCCTATTCTAATAGGATTGTATAAACCTATTTCTATTTCAATAGAATCATATAAACCTATTCCTATTCTAACAGGATTGTCTCTATCAGTTGTAATTGAGACAAGCCCATAATACCAGATCTTTGCTGGTAGAACTTGTGTAACCCTCAAAGTCCAGTAAAGTAGGTTCCAGAGCCTGCAATTTTGGCCTATAATGAAGGTATGATAAAGATGGTGTGAGCTGCTGAATAAAGTGTGACTTAAAGGTGAACGAGCATGAGATAACTCAAGTTCAAAGATCGAATGTCAGGGAAGAAATACAAAGTCAAGTAAAGGCAGGACATCAGATTTAAATGCAGTTAAATTATCAAATTCTTTTATATTGCAAAAAATATAAATTAGTAGTAATATAATTGTTAATACAACAGAAAAGTAAGTAGGTTTTTCAGTTTTTGGCTTTACGGCTTTAGGATTAACAATAATATATTATGGCAAAATATTATGAGGCTAATATATCTAAGATAAAAGTTGAAATATGGTGACTCTTCACTGGTTAATAGTTTACCGGATAAGGAAATTGAATCATCACCCCACACCAATAAGCTATTAATTATAAAATTATAATCCGTTAACCAACCGTTTATTCGATAACCCAATACCAATAAGCCAATTTTACGTATTGGCTACTGTTCGATTTAGAACAGCCCTAGTGCAAAACTTAACATTCATGGATTGTGGTTTATATCAGGTTTTGGTTTTTCTTTTAGGCTACAATATTCAATAGTGATGTATTTCGTAATTCATTCTCACGTGCAACACTTGGACACATAAAAATGCTCTCTTAAGTGTGTATCATATGTCATCTAAACGCTGATTAAGTTTTCTTGCTCTTATTGAACTTTTGGTCTAACTTTATTTAATCGATTTCATGAAACTTTTGGAAACTCTCATAGAAGGGTCTTTTTAACTATCCATTACACGAAGTAACATTCTTGTGAATGAACTTTTCAGGTTGTTGGTTGGAAAGGTGCTGGAGGATCTGGCAGTGAGAATTCAAAACTTTTTAATTCTTTTGAAGACAATCAAGAAGAATATGACTGGAATGATCTAGAAACCGATCTTTACCATTGGACAAAGACTTTACGACCAGTTCAGGTATGCTCAGGGTGTGGACTTGACCTTGACCTTCTGTATGTTTCAAAATTTTTATGTGTTCCCCTGTTGAATGGTTGACCTTACACTATGTGTCTATTATTTAAATAGTGGTATCCTGGTCATATCGCGAAAACTGAGAAAGAGCTCAAGGAACAGTTGAAACTAATGGATGTTGTCATAGAGGTTCGAGATGCAAGAATCCCGATGTCCACAAGTCATCCACAGGTTAGAAACTTGTTTATGCTTTGCCTGTTTACTCTTTGGCTAGATTATTGAATGTTTTGTTATATTTGCATTTTCGCTAGGGTATTGAGTGATGTGCTAGTAACCTAGCCTGCTTTCCCAACAGCTAGGTAGATGTGGCCCACTGTGCCATCCTAAACTATCTTTACCACTTAAGACTTGTTGTGTAAAAGTTGAGTGTTGCAAACAGCTTAAGAACTCAATCATTATATTTTATTTTAATTGGAGAATGTGTTTAAGAGTACTTTTTTTTTTTTTTGAGATTGGTAACTTTGTGCTTAGGAGTACATTTCACTTTTGAGATCTGAATTATGCTTGACAATTCTGATTAGAAATGGGACTGCTTGGTATTCTGCATATGGATTGCCTCTATAACACTGGCCAGCTATTTTCCGCTTAGCCTGGCCTATTCTTTCTACATCGCTTGTGATTAGTATAAACTGATACTCCATCTGAGAGTTTTCCTCGTCTGGCTTAGAAATGTGCCTATTGAATTGCAGTTTAATCACTTCAGGGATTGTGTTTTGAACTTTGGAAATTAATAATATACTTAACAAAAACTTTGATCACTTTGATGGTTTGCAGCTATAAAGACTAGATTACTCATAGGTATCACTTTGACCCTGTTCTCCTTTGGCATAGCCAAACAAGAGCAAATGAGATGTAGGAAAAATTTTCCAATGATGCAAAGAGCGTGCTATGAAGTAGATACTCAAGAATCTCGTTTGAATCAGGATAGAGTATGCATGTGCAGTCCATAATTCCTTTTCTTGACTTCAATTCAGTATACCAGACTCCTATTGCATATGAGATTCTTTTTTCGTCTCCTTTCAACTTTCATCTATTTTGTTTTGTTAGTAATTCAACTTTGATAAGCAGATGGACTCATGGCTTGGCAACAGAAAG-AGGATCTTGGTTTTGAATCGAGAGGATATGATAT-CAACTGCTGATCGGAATGCTTGGGCAACTTATTATGCTAATCAA-GGGATTAAAGTTGTTTTCTCCAATGGCCAGCTTGGAATGGTGATTGGAATAACATTTACTTGTTTCTGATCCAACAAAAAGTCGTTGTATACTTTGTTGATTCATGTATTCGACAAATTTCAGGGAGCACTGAAGCTT-GGAAGGTTGGCGAAAGC</genome_strand>
        <mrna_strand>AAAATATCCTTTGCATACCAACAAGCCTTACAAAGTATATGTT----CAAATGCCTTGTGCAGTGGTACATCTGAAGCGATAATCTGCAACCGATGGCTACACAGTTCCCTGGTTTGTTGCTGAACAGCGCTGGCCTTACACTCGCCGGCGGCCGGTCTCTTAGTTGCCGGAACAATCAACCACCGGCAGCCATCGCCTCTGCCAATTCCCCTTCTCTCTCTTCCACAATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGTTGGAAAGGTGCTGGAGGGTCTGGCAGTCAGAATTCAAAACTTTTTAATTCTTTTGAAGACATTCAAGAAGAATATGACTGGAATGATCTAGAAACCGATCTTTACCATTGGACAAAGACTTTACGACCAGTTCAG..........................................................................................................AGTGGTATCCTGGTCATATCGCGAAAACTGAGAAAGAGCTCAAGGAACAGTTGAAACTAATGGATGTTGTCATAGAGGTTCGAGATGCAAGAATCCCGATGTCCACAAGTCATCCACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTCAACTTCGATGAGCAGATGGACTCATGGCTTGGCAACAGAAAGAAGGATTTTGGTTTTGAATCGAGAGGATATGATATNCAACTGCTGATCGGAATGCTTGGGCAACTTATTATGCTAATCAANNGGATTAAAGTTGTTTTCTCCAATGGCCAGCTTGGAATG....................................................................................GGAGCACTGAATCTTGGGAAGGTTGGCGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475736" ref_strand="+" ref_description="SGN-E475736 [cSTB-41-J1]">
      <seq>gttcaaatgccttgtgcagtggtacatctgaagcgataatctgcaaccgatggctacacagttccctggtttgttgctgaacagcgctggccttacactcgccggcggccggtctcttagttgccggaacaatcaaccaccggcagccatcgcctctgccaattccccttctctctcttccacaattcaggttgttggttggaaaggtgctggagggtctggcagtcagaattcaaaactttttaattcttttgaagacattcaagaagaatatgactggaatgatctagaaaccgatctttaccattggacaaagactttacgaccagttcagtggtatcctggtcatatcgcgaaaactgagaaagagctcaaggaacagttgaaactaatggatgttgtcatagaggttcgagatgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79153" stop="82089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79450" g_stop="79639" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79640" i_stop="81448" i_length="1809">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81449" g_stop="81592" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="334" r_length="144" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81593" i_stop="81700" i_length="108">
            <donor d_prob="0.796" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81701" g_stop="81789" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="423" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E475736" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79450" e_stop="79639"/>
          <exon e_start="81449" e_stop="81592"/>
          <exon e_start="81701" e_stop="81789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAATGCCTTGTGCAGTGGTAAATCTGAAGCGATAATCTGCAACCGATGGCTACACAGCTCCCTGGTTTGTTGCTGAACAGCGCTGGCCTTACACTCGCCGGCGCCCGGTCTCTTAGTTGCCGGAACAATCAACCACCGGCAGCTATCTCCTCTGCCAACCCTCCTTCTCTCTCTTCCACAATTCAGGTAAACTGTATAATATTTCCTATGGTATATTTACGCTGGATACAGCCAAAGCTTGAAAGCTGAACTTTTATTTTGCCCTTTTGCTTTGAAGCAGCGTAATAACTTGTTTTATACTAGCTCTCTGAGGTGCTGCAATATCTGCATATAGTTAGTGGAGAAGTATGCACTATACAAAATTTCACTTCATTTACTTCTGTATTTAAGGTCCTAAATTAGCCAATAGTTGCATACTTCTCCATCCAACCCATAAATGAACAAACGGAGTCGTCAAGACATCTAATTTTCTGAAATTGGAACATCAATTTTTTAGACTTCTTTTTTAATTAGCAACTACATAAAAAGTACTAAAAATCCCAACTTTTTGGTATCTTTAGAACGTAAATATGTTAATTTTATTTTTAGAAAAACAACCTTTAGAAGTGCATAAAAAGCAGGATAAATAATAACTTTGTATAGTTAAAAGAAAAAAGAAACTGCTTGATCCCCTAATGGTTGCCAAAAAAAGATATTTAGATGGAGGAAGAACTTCGGAGTATTAGAGATGGAGGTGTTGAGACACAACAAACTTCAAATTTGAGACTGAGACCATGGGAAAGGGTTGTTGCTGAGAGAAGGAAACAGCATTCTCTGGTATTGCTTTAGGGAGTTTGTAAGTGTCCCTTCCAAGAGATTTTTTTTTATTATTATAGATATGAGATTGGATAAACTGGATGTGAAAATAGTTCTTGGAGAATCTATCAAATTAGGACATAGTCAAGAGGAACCAAATGTAGTGTTAATTGGATTTGTTAGAATAGGAATAGGATTATATAAAGCTATTCCTATTCTAATAGGATTGTATAAACCTATTTCTATTTCAATAGAATCATATAAACCTATTCCTATTCTAACAGGATTGTCTCTATCAGTTGTAATTGAGACAAGCCCATAATACCAGATCTTTGCTGGTAGAACTTGTGTAACCCTCAAAGTCCAGTAAAGTAGGTTCCAGAGCCTGCAATTTTGGCCTATAATGAAGGTATGATAAAGATGGTGTGAGCTGCTGAATAAAGTGTGACTTAAAGGTGAACGAGCATGAGATAACTCAAGTTCAAAGATCGAATGTCAGGGAAGAAATACAAAGTCAAGTAAAGGCAGGACATCAGATTTAAATGCAGTTAAATTATCAAATTCTTTTATATTGCAAAAAATATAAATTAGTAGTAATATAATTGTTAATACAACAGAAAAGTAAGTAGGTTTTTCAGTTTTTGGCTTTACGGCTTTAGGATTAACAATAATATATTATGGCAAAATATTATGAGGCTAATATATCTAAGATAAAAGTTGAAATATGGTGACTCTTCACTGGTTAATAGTTTACCGGATAAGGAAATTGAATCATCACCCCACACCAATAAGCTATTAATTATAAAATTATAATCCGTTAACCAACCGTTTATTCGATAACCCAATACCAATAAGCCAATTTTACGTATTGGCTACTGTTCGATTTAGAACAGCCCTAGTGCAAAACTTAACATTCATGGATTGTGGTTTATATCAGGTTTTGGTTTTTCTTTTAGGCTACAATATTCAATAGTGATGTATTTCGTAATTCATTCTCACGTGCAACACTTGGACACATAAAAATGCTCTCTTAAGTGTGTATCATATGTCATCTAAACGCTGATTAAGTTTTCTTGCTCTTATTGAACTTTTGGTCTAACTTTATTTAATCGATTTCATGAAACTTTTGGAAACTCTCATAGAAGGGTCTTTTTAACTATCCATTACACGAAGTAACATTCTTGTGAATGAACTTTTCAGGTTGTTGGTTGGAAAGGTGCTGGAGGATCTGGCAGTGAGAATTCAAAACTTTTTAATTCTTTTGAAGACAATCAAGAAGAATATGACTGGAATGATCTAGAAACCGATCTTTACCATTGGACAAAGACTTTACGACCAGTTCAGGTATGCTCAGGGTGTGGACTTGACCTTGACCTTCTGTATGTTTCAAAATTTTTATGTGTTCCCCTGTTGAATGGTTGACCTTACACTATGTGTCTATTATTTAAATAGTGGTATCCTGGTCATATCGCGAAAACTGAGAAAGAGCTCAAGGAACAGTTGAAACTAATGGATGTTGTCATAGAGGTTCGAGATGCAAG</genome_strand>
        <mrna_strand>GTTCAAATGCCTTGTGCAGTGGTACATCTGAAGCGATAATCTGCAACCGATGGCTACACAGTTCCCTGGTTTGTTGCTGAACAGCGCTGGCCTTACACTCGCCGGCGGCCGGTCTCTTAGTTGCCGGAACAATCAACCACCGGCAGCCATCGCCTCTGCCAATTCCCCTTCTCTCTCTTCCACAATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGTTGGAAAGGTGCTGGAGGGTCTGGCAGTCAGAATTCAAAACTTTTTAATTCTTTTGAAGACATTCAAGAAGAATATGACTGGAATGATCTAGAAACCGATCTTTACCATTGGACAAAGACTTTACGACCAGTTCAG............................................................................................................TGGTATCCTGGTCATATCGCGAAAACTGAGAAAGAGCTCAAGGAACAGTTGAAACTAATGGATGTTGTCATAGAGGTTCGAGATGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200518" ref_strand="+" ref_description="SGN-E200518 [cLEB-8-D19]">
      <seq>gcacgaggtgcagtggtaaatctgaagcgataatctgcaaccgatggctacacagctccctggtttgttgctgaacagcgctggccttacactcgccggcgcccggtctcttagttgccggaacaatcaaccaccggcagctatctcctctgccaaccctccttctctctcttccacaattcaggttgttggttggaaaggtgctggaggatctggcagtgagaattcaaaactttttaattcttttgaagacaatcaagaagaatatgactggaatgatctagaaaccgatctttaccattggacaaagactttacgaccagttcagtggtatcctggtcatatcgcgaaaactgagaaagagctcaaggaacagttgaaactaatggatgttgtcatagaggttcgagatgcaagaatcccgatgtccacaagtcatccacagatggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79163" stop="82119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79469" g_stop="79639" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="184" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79640" i_stop="81448" i_length="1809">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81449" g_stop="81592" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="328" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81593" i_stop="81700" i_length="108">
            <donor d_prob="0.796" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81701" g_stop="81817" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="445" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E200518" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79469" e_stop="79639"/>
          <exon e_start="81449" e_stop="81592"/>
          <exon e_start="81701" e_stop="81817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTAAATCTGAAGCGATAATCTGCAACCGATGGCTACACAGCTCCCTGGTTTGTTGCTGAACAGCGCTGGCCTTACACTCGCCGGCGCCCGGTCTCTTAGTTGCCGGAACAATCAACCACCGGCAGCTATCTCCTCTGCCAACCCTCCTTCTCTCTCTTCCACAATTCAGGTAAACTGTATAATATTTCCTATGGTATATTTACGCTGGATACAGCCAAAGCTTGAAAGCTGAACTTTTATTTTGCCCTTTTGCTTTGAAGCAGCGTAATAACTTGTTTTATACTAGCTCTCTGAGGTGCTGCAATATCTGCATATAGTTAGTGGAGAAGTATGCACTATACAAAATTTCACTTCATTTACTTCTGTATTTAAGGTCCTAAATTAGCCAATAGTTGCATACTTCTCCATCCAACCCATAAATGAACAAACGGAGTCGTCAAGACATCTAATTTTCTGAAATTGGAACATCAATTTTTTAGACTTCTTTTTTAATTAGCAACTACATAAAAAGTACTAAAAATCCCAACTTTTTGGTATCTTTAGAACGTAAATATGTTAATTTTATTTTTAGAAAAACAACCTTTAGAAGTGCATAAAAAGCAGGATAAATAATAACTTTGTATAGTTAAAAGAAAAAAGAAACTGCTTGATCCCCTAATGGTTGCCAAAAAAAGATATTTAGATGGAGGAAGAACTTCGGAGTATTAGAGATGGAGGTGTTGAGACACAACAAACTTCAAATTTGAGACTGAGACCATGGGAAAGGGTTGTTGCTGAGAGAAGGAAACAGCATTCTCTGGTATTGCTTTAGGGAGTTTGTAAGTGTCCCTTCCAAGAGATTTTTTTTTATTATTATAGATATGAGATTGGATAAACTGGATGTGAAAATAGTTCTTGGAGAATCTATCAAATTAGGACATAGTCAAGAGGAACCAAATGTAGTGTTAATTGGATTTGTTAGAATAGGAATAGGATTATATAAAGCTATTCCTATTCTAATAGGATTGTATAAACCTATTTCTATTTCAATAGAATCATATAAACCTATTCCTATTCTAACAGGATTGTCTCTATCAGTTGTAATTGAGACAAGCCCATAATACCAGATCTTTGCTGGTAGAACTTGTGTAACCCTCAAAGTCCAGTAAAGTAGGTTCCAGAGCCTGCAATTTTGGCCTATAATGAAGGTATGATAAAGATGGTGTGAGCTGCTGAATAAAGTGTGACTTAAAGGTGAACGAGCATGAGATAACTCAAGTTCAAAGATCGAATGTCAGGGAAGAAATACAAAGTCAAGTAAAGGCAGGACATCAGATTTAAATGCAGTTAAATTATCAAATTCTTTTATATTGCAAAAAATATAAATTAGTAGTAATATAATTGTTAATACAACAGAAAAGTAAGTAGGTTTTTCAGTTTTTGGCTTTACGGCTTTAGGATTAACAATAATATATTATGGCAAAATATTATGAGGCTAATATATCTAAGATAAAAGTTGAAATATGGTGACTCTTCACTGGTTAATAGTTTACCGGATAAGGAAATTGAATCATCACCCCACACCAATAAGCTATTAATTATAAAATTATAATCCGTTAACCAACCGTTTATTCGATAACCCAATACCAATAAGCCAATTTTACGTATTGGCTACTGTTCGATTTAGAACAGCCCTAGTGCAAAACTTAACATTCATGGATTGTGGTTTATATCAGGTTTTGGTTTTTCTTTTAGGCTACAATATTCAATAGTGATGTATTTCGTAATTCATTCTCACGTGCAACACTTGGACACATAAAAATGCTCTCTTAAGTGTGTATCATATGTCATCTAAACGCTGATTAAGTTTTCTTGCTCTTATTGAACTTTTGGTCTAACTTTATTTAATCGATTTCATGAAACTTTTGGAAACTCTCATAGAAGGGTCTTTTTAACTATCCATTACACGAAGTAACATTCTTGTGAATGAACTTTTCAGGTTGTTGGTTGGAAAGGTGCTGGAGGATCTGGCAGTGAGAATTCAAAACTTTTTAATTCTTTTGAAGACAATCAAGAAGAATATGACTGGAATGATCTAGAAACCGATCTTTACCATTGGACAAAGACTTTACGACCAGTTCAGGTATGCTCAGGGTGTGGACTTGACCTTGACCTTCTGTATGTTTCAAAATTTTTATGTGTTCCCCTGTTGAATGGTTGACCTTACACTATGTGTCTATTATTTAAATAGTGGTATCCTGGTCATATCGCGAAAACTGAGAAAGAGCTCAAGGAACAGTTGAAACTAATGGATGTTGTCATAGAGGTTCGAGATGCAAGAATCCCGATGTCCACAAGTCATCCACAG</genome_strand>
        <mrna_strand>TGGTAAATCTGAAGCGATAATCTGCAACCGATGGCTACACAGCTCCCTGGTTTGTTGCTGAACAGCGCTGGCCTTACACTCGCCGGCGCCCGGTCTCTTAGTTGCCGGAACAATCAACCACCGGCAGCTATCTCCTCTGCCAACCCTCCTTCTCTCTCTTCCACAATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGTTGGAAAGGTGCTGGAGGATCTGGCAGTGAGAATTCAAAACTTTTTAATTCTTTTGAAGACAATCAAGAAGAATATGACTGGAATGATCTAGAAACCGATCTTTACCATTGGACAAAGACTTTACGACCAGTTCAG............................................................................................................TGGTATCCTGGTCATATCGCGAAAACTGAGAAAGAGCTCAAGGAACAGTTGAAACTAATGGATGTTGTCATAGAGGTTCGAGATGCAAGAATCCCGATGTCCACAAGTCATCCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366963" ref_strand="+" ref_description="SGN-E366963 [cLPT-6-I4]">
      <seq>taaatctggagcgataatctgcaaccgatggctacacagctccctggtttgttgctgaacagcgctggccttacactcgccggcggccggtctcttagttgccggaacaatcaaccaccggcagccatctcctctgccaaccctccttctctctcttccacaattcaggttgttggttggaaaggtgctggaggatccggcagtgagaattcaaaactttttaattctattgaagacattcaagaagaatatgactggaatgatctagaaaccgatctttaccattggacaaagactttacgaccagttcagtggtatcctggtcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79172" stop="81899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79472" g_stop="79639" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79640" i_stop="81448" i_length="1809">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81449" g_stop="81592" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="312" r_length="144" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81593" i_stop="81700" i_length="108">
            <donor d_prob="0.796" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81701" g_stop="81716" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="328" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E366963" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79472" e_stop="79639"/>
          <exon e_start="81449" e_stop="81592"/>
          <exon e_start="81701" e_stop="81716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATCTGAAGCGATAATCTGCAACCGATGGCTACACAGCTCCCTGGTTTGTTGCTGAACAGCGCTGGCCTTACACTCGCCGGCGCCCGGTCTCTTAGTTGCCGGAACAATCAACCACCGGCAGCTATCTCCTCTGCCAACCCTCCTTCTCTCTCTTCCACAATTCAGGTAAACTGTATAATATTTCCTATGGTATATTTACGCTGGATACAGCCAAAGCTTGAAAGCTGAACTTTTATTTTGCCCTTTTGCTTTGAAGCAGCGTAATAACTTGTTTTATACTAGCTCTCTGAGGTGCTGCAATATCTGCATATAGTTAGTGGAGAAGTATGCACTATACAAAATTTCACTTCATTTACTTCTGTATTTAAGGTCCTAAATTAGCCAATAGTTGCATACTTCTCCATCCAACCCATAAATGAACAAACGGAGTCGTCAAGACATCTAATTTTCTGAAATTGGAACATCAATTTTTTAGACTTCTTTTTTAATTAGCAACTACATAAAAAGTACTAAAAATCCCAACTTTTTGGTATCTTTAGAACGTAAATATGTTAATTTTATTTTTAGAAAAACAACCTTTAGAAGTGCATAAAAAGCAGGATAAATAATAACTTTGTATAGTTAAAAGAAAAAAGAAACTGCTTGATCCCCTAATGGTTGCCAAAAAAAGATATTTAGATGGAGGAAGAACTTCGGAGTATTAGAGATGGAGGTGTTGAGACACAACAAACTTCAAATTTGAGACTGAGACCATGGGAAAGGGTTGTTGCTGAGAGAAGGAAACAGCATTCTCTGGTATTGCTTTAGGGAGTTTGTAAGTGTCCCTTCCAAGAGATTTTTTTTTATTATTATAGATATGAGATTGGATAAACTGGATGTGAAAATAGTTCTTGGAGAATCTATCAAATTAGGACATAGTCAAGAGGAACCAAATGTAGTGTTAATTGGATTTGTTAGAATAGGAATAGGATTATATAAAGCTATTCCTATTCTAATAGGATTGTATAAACCTATTTCTATTTCAATAGAATCATATAAACCTATTCCTATTCTAACAGGATTGTCTCTATCAGTTGTAATTGAGACAAGCCCATAATACCAGATCTTTGCTGGTAGAACTTGTGTAACCCTCAAAGTCCAGTAAAGTAGGTTCCAGAGCCTGCAATTTTGGCCTATAATGAAGGTATGATAAAGATGGTGTGAGCTGCTGAATAAAGTGTGACTTAAAGGTGAACGAGCATGAGATAACTCAAGTTCAAAGATCGAATGTCAGGGAAGAAATACAAAGTCAAGTAAAGGCAGGACATCAGATTTAAATGCAGTTAAATTATCAAATTCTTTTATATTGCAAAAAATATAAATTAGTAGTAATATAATTGTTAATACAACAGAAAAGTAAGTAGGTTTTTCAGTTTTTGGCTTTACGGCTTTAGGATTAACAATAATATATTATGGCAAAATATTATGAGGCTAATATATCTAAGATAAAAGTTGAAATATGGTGACTCTTCACTGGTTAATAGTTTACCGGATAAGGAAATTGAATCATCACCCCACACCAATAAGCTATTAATTATAAAATTATAATCCGTTAACCAACCGTTTATTCGATAACCCAATACCAATAAGCCAATTTTACGTATTGGCTACTGTTCGATTTAGAACAGCCCTAGTGCAAAACTTAACATTCATGGATTGTGGTTTATATCAGGTTTTGGTTTTTCTTTTAGGCTACAATATTCAATAGTGATGTATTTCGTAATTCATTCTCACGTGCAACACTTGGACACATAAAAATGCTCTCTTAAGTGTGTATCATATGTCATCTAAACGCTGATTAAGTTTTCTTGCTCTTATTGAACTTTTGGTCTAACTTTATTTAATCGATTTCATGAAACTTTTGGAAACTCTCATAGAAGGGTCTTTTTAACTATCCATTACACGAAGTAACATTCTTGTGAATGAACTTTTCAGGTTGTTGGTTGGAAAGGTGCTGGAGGATCTGGCAGTGAGAATTCAAAACTTTTTAATTCTTTTGAAGACAATCAAGAAGAATATGACTGGAATGATCTAGAAACCGATCTTTACCATTGGACAAAGACTTTACGACCAGTTCAGGTATGCTCAGGGTGTGGACTTGACCTTGACCTTCTGTATGTTTCAAAATTTTTATGTGTTCCCCTGTTGAATGGTTGACCTTACACTATGTGTCTATTATTTAAATAGTGGTATCCTGGTCATA</genome_strand>
        <mrna_strand>TAAATCTGGAGCGATAATCTGCAACCGATGGCTACACAGCTCCCTGGTTTGTTGCTGAACAGCGCTGGCCTTACACTCGCCGGCGGCCGGTCTCTTAGTTGCCGGAACAATCAACCACCGGCAGCCATCTCCTCTGCCAACCCTCCTTCTCTCTCTTCCACAATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGTTGGAAAGGTGCTGGAGGATCCGGCAGTGAGAATTCAAAACTTTTTAATTCTATTGAAGACATTCAAGAAGAATATGACTGGAATGATCTAGAAACCGATCTTTACCATTGGACAAAGACTTTACGACCAGTTCAG............................................................................................................TGGTATCCTGGTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728995" ref_strand="+" ref_description="SGN-E728995 [LA19CE10]">
      <seq>ctacacagctccctggtttgttgctgaacagcgctggccttacactcgccggcgcccggtctcttagttgccggaacaatcaaccaccggcagctatctcctctgccaaccctccttctctctcttccacaattcaggttgttggttggaaaggtgctggaggatctggcagtgagaattcaaaactttttaattcttttgaagacaatcaagaagaatatgactggaatgatctagaaaccgatctttaccattggacaaagactttacgaccagttcagtggtatcctggtcatatcgcgaaaactgagaaagagctcaaggaacagttgaaactaatggatgttgtcatagaggttcgagatgcaagaatcccgatgtccacaagtcatccacagatggactcatggcttggcaacagaaagaggatcttggttttgaatcgagaggatatgatatcaactgctgatcggaatgcttgggcaacttattatgctaatcaagggattaaagttgttttctccaatggccagcttggaatgggagcactgaagctcggaaggttggcgaaagcattagcgggtactgtaaacataagacgtaaagcaaaaggactacttcctcgcccagttcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79203" stop="83331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79503" g_stop="79639" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79640" i_stop="81448" i_length="1809">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81449" g_stop="81592" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="281" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81593" i_stop="81700" i_length="108">
            <donor d_prob="0.796" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81701" g_stop="81817" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="398" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81818" i_stop="82714" i_length="897">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82715" g_stop="82858" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="542" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82859" i_stop="82942" i_length="84">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82943" g_stop="83029" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="629" r_length="87" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E728995" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79503" e_stop="79639"/>
          <exon e_start="81449" e_stop="81592"/>
          <exon e_start="81701" e_stop="81817"/>
          <exon e_start="82715" e_stop="82858"/>
          <exon e_start="82943" e_stop="83029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACACAGCTCCCTGGTTTGTTGCTGAACAGCGCTGGCCTTACACTCGCCGGCGCCCGGTCTCTTAGTTGCCGGAACAATCAACCACCGGCAGCTATCTCCTCTGCCAACCCTCCTTCTCTCTCTTCCACAATTCAGGTAAACTGTATAATATTTCCTATGGTATATTTACGCTGGATACAGCCAAAGCTTGAAAGCTGAACTTTTATTTTGCCCTTTTGCTTTGAAGCAGCGTAATAACTTGTTTTATACTAGCTCTCTGAGGTGCTGCAATATCTGCATATAGTTAGTGGAGAAGTATGCACTATACAAAATTTCACTTCATTTACTTCTGTATTTAAGGTCCTAAATTAGCCAATAGTTGCATACTTCTCCATCCAACCCATAAATGAACAAACGGAGTCGTCAAGACATCTAATTTTCTGAAATTGGAACATCAATTTTTTAGACTTCTTTTTTAATTAGCAACTACATAAAAAGTACTAAAAATCCCAACTTTTTGGTATCTTTAGAACGTAAATATGTTAATTTTATTTTTAGAAAAACAACCTTTAGAAGTGCATAAAAAGCAGGATAAATAATAACTTTGTATAGTTAAAAGAAAAAAGAAACTGCTTGATCCCCTAATGGTTGCCAAAAAAAGATATTTAGATGGAGGAAGAACTTCGGAGTATTAGAGATGGAGGTGTTGAGACACAACAAACTTCAAATTTGAGACTGAGACCATGGGAAAGGGTTGTTGCTGAGAGAAGGAAACAGCATTCTCTGGTATTGCTTTAGGGAGTTTGTAAGTGTCCCTTCCAAGAGATTTTTTTTTATTATTATAGATATGAGATTGGATAAACTGGATGTGAAAATAGTTCTTGGAGAATCTATCAAATTAGGACATAGTCAAGAGGAACCAAATGTAGTGTTAATTGGATTTGTTAGAATAGGAATAGGATTATATAAAGCTATTCCTATTCTAATAGGATTGTATAAACCTATTTCTATTTCAATAGAATCATATAAACCTATTCCTATTCTAACAGGATTGTCTCTATCAGTTGTAATTGAGACAAGCCCATAATACCAGATCTTTGCTGGTAGAACTTGTGTAACCCTCAAAGTCCAGTAAAGTAGGTTCCAGAGCCTGCAATTTTGGCCTATAATGAAGGTATGATAAAGATGGTGTGAGCTGCTGAATAAAGTGTGACTTAAAGGTGAACGAGCATGAGATAACTCAAGTTCAAAGATCGAATGTCAGGGAAGAAATACAAAGTCAAGTAAAGGCAGGACATCAGATTTAAATGCAGTTAAATTATCAAATTCTTTTATATTGCAAAAAATATAAATTAGTAGTAATATAATTGTTAATACAACAGAAAAGTAAGTAGGTTTTTCAGTTTTTGGCTTTACGGCTTTAGGATTAACAATAATATATTATGGCAAAATATTATGAGGCTAATATATCTAAGATAAAAGTTGAAATATGGTGACTCTTCACTGGTTAATAGTTTACCGGATAAGGAAATTGAATCATCACCCCACACCAATAAGCTATTAATTATAAAATTATAATCCGTTAACCAACCGTTTATTCGATAACCCAATACCAATAAGCCAATTTTACGTATTGGCTACTGTTCGATTTAGAACAGCCCTAGTGCAAAACTTAACATTCATGGATTGTGGTTTATATCAGGTTTTGGTTTTTCTTTTAGGCTACAATATTCAATAGTGATGTATTTCGTAATTCATTCTCACGTGCAACACTTGGACACATAAAAATGCTCTCTTAAGTGTGTATCATATGTCATCTAAACGCTGATTAAGTTTTCTTGCTCTTATTGAACTTTTGGTCTAACTTTATTTAATCGATTTCATGAAACTTTTGGAAACTCTCATAGAAGGGTCTTTTTAACTATCCATTACACGAAGTAACATTCTTGTGAATGAACTTTTCAGGTTGTTGGTTGGAAAGGTGCTGGAGGATCTGGCAGTGAGAATTCAAAACTTTTTAATTCTTTTGAAGACAATCAAGAAGAATATGACTGGAATGATCTAGAAACCGATCTTTACCATTGGACAAAGACTTTACGACCAGTTCAGGTATGCTCAGGGTGTGGACTTGACCTTGACCTTCTGTATGTTTCAAAATTTTTATGTGTTCCCCTGTTGAATGGTTGACCTTACACTATGTGTCTATTATTTAAATAGTGGTATCCTGGTCATATCGCGAAAACTGAGAAAGAGCTCAAGGAACAGTTGAAACTAATGGATGTTGTCATAGAGGTTCGAGATGCAAGAATCCCGATGTCCACAAGTCATCCACAGGTTAGAAACTTGTTTATGCTTTGCCTGTTTACTCTTTGGCTAGATTATTGAATGTTTTGTTATATTTGCATTTTCGCTAGGGTATTGAGTGATGTGCTAGTAACCTAGCCTGCTTTCCCAACAGCTAGGTAGATGTGGCCCACTGTGCCATCCTAAACTATCTTTACCACTTAAGACTTGTTGTGTAAAAGTTGAGTGTTGCAAACAGCTTAAGAACTCAATCATTATATTTTATTTTAATTGGAGAATGTGTTTAAGAGTACTTTTTTTTTTTTTTGAGATTGGTAACTTTGTGCTTAGGAGTACATTTCACTTTTGAGATCTGAATTATGCTTGACAATTCTGATTAGAAATGGGACTGCTTGGTATTCTGCATATGGATTGCCTCTATAACACTGGCCAGCTATTTTCCGCTTAGCCTGGCCTATTCTTTCTACATCGCTTGTGATTAGTATAAACTGATACTCCATCTGAGAGTTTTCCTCGTCTGGCTTAGAAATGTGCCTATTGAATTGCAGTTTAATCACTTCAGGGATTGTGTTTTGAACTTTGGAAATTAATAATATACTTAACAAAAACTTTGATCACTTTGATGGTTTGCAGCTATAAAGACTAGATTACTCATAGGTATCACTTTGACCCTGTTCTCCTTTGGCATAGCCAAACAAGAGCAAATGAGATGTAGGAAAAATTTTCCAATGATGCAAAGAGCGTGCTATGAAGTAGATACTCAAGAATCTCGTTTGAATCAGGATAGAGTATGCATGTGCAGTCCATAATTCCTTTTCTTGACTTCAATTCAGTATACCAGACTCCTATTGCATATGAGATTCTTTTTTCGTCTCCTTTCAACTTTCATCTATTTTGTTTTGTTAGTAATTCAACTTTGATAAGCAGATGGACTCATGGCTTGGCAACAGAAAGAGGATCTTGGTTTTGAATCGAGAGGATATGATATCAACTGCTGATCGGAATGCTTGGGCAACTTATTATGCTAATCAAGGGATTAAAGTTGTTTTCTCCAATGGCCAGCTTGGAATGGTGATTGGAATAACATTTACTTGTTTCTGATCCAACAAAAAGTCGTTGTATACTTTGTTGATTCATGTATTCGACAAATTTCAGGGAGCACTGAAGCTTGGAAGGTTGGCGAAAGCATTAGCGGGTACTGTAAACATAAAACGTAAAGCAAAAGGACTACTTCCTCGCCCA</genome_strand>
        <mrna_strand>CTACACAGCTCCCTGGTTTGTTGCTGAACAGCGCTGGCCTTACACTCGCCGGCGCCCGGTCTCTTAGTTGCCGGAACAATCAACCACCGGCAGCTATCTCCTCTGCCAACCCTCCTTCTCTCTCTTCCACAATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGTTGGAAAGGTGCTGGAGGATCTGGCAGTGAGAATTCAAAACTTTTTAATTCTTTTGAAGACAATCAAGAAGAATATGACTGGAATGATCTAGAAACCGATCTTTACCATTGGACAAAGACTTTACGACCAGTTCAG............................................................................................................TGGTATCCTGGTCATATCGCGAAAACTGAGAAAGAGCTCAAGGAACAGTTGAAACTAATGGATGTTGTCATAGAGGTTCGAGATGCAAGAATCCCGATGTCCACAAGTCATCCACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACTCATGGCTTGGCAACAGAAAGAGGATCTTGGTTTTGAATCGAGAGGATATGATATCAACTGCTGATCGGAATGCTTGGGCAACTTATTATGCTAATCAAGGGATTAAAGTTGTTTTCTCCAATGGCCAGCTTGGAATG....................................................................................GGAGCACTGAAGCTCGGAAGGTTGGCGAAAGCATTAGCGGGTACTGTAAACATAAGACGTAAAGCAAAAGGACTACTTCCTCGCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728263" ref_strand="+" ref_description="SGN-E728263 [LA17BA05]">
      <seq>gttgctgaacagcgctggccttacactcgccggcgcccggtctcttagttgccggaacaatcaaccaccggcagctatctcctctgccaaccctccttctctctcttccacaattcaggttgttggttggaaaggtgctggaggatctggcagtgagaattcaaaactttttaattcttttgaagacaatcaagaagaatatgactggaatgatctagaaaccgatctttaccattggacaaagactttacgaccagttcagtggtatcctggtcatatcgcgaaaactgagaaagagctcaaggaacagttgaaactaatggatgttgtcatagaggttcgagatgcaagaatcccgatgtccacaagtcatccacagatggactcatggcttggcaacagaaagaggatcttggttttgaatcgagaggatatgatatcaactgctgatcggaatgcttgggcaacttattatgctaatcaagggattaaagttgttttctccaatggccagcttggaatgggagcactgaagcttggaaggttggcgaaagcattagcgggtactgtaaacataaaacgtaaagcaaaaggactacttcctcgcccagttcgagctggtgtagttgggtatccaaatngtggtaagtcatctctggtaaatcgtttgctgaagcgccggatgtgtgctgcagccccaagaccangtgtcaccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79222" stop="84126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79522" g_stop="79639" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79640" i_stop="81448" i_length="1809">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81449" g_stop="81592" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="262" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81593" i_stop="81700" i_length="108">
            <donor d_prob="0.796" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81701" g_stop="81817" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="379" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81818" i_stop="82714" i_length="897">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82715" g_stop="82858" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="523" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82859" i_stop="82942" i_length="84">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82943" g_stop="83029" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="610" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83030" i_stop="83719" i_length="690">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83720" g_stop="83826" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="717" r_length="107" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E728263" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79522" e_stop="79639"/>
          <exon e_start="81449" e_stop="81592"/>
          <exon e_start="81701" e_stop="81817"/>
          <exon e_start="82715" e_stop="82858"/>
          <exon e_start="82943" e_stop="83029"/>
          <exon e_start="83720" e_stop="83826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTGAACAGCGCTGGCCTTACACTCGCCGGCGCCCGGTCTCTTAGTTGCCGGAACAATCAACCACCGGCAGCTATCTCCTCTGCCAACCCTCCTTCTCTCTCTTCCACAATTCAGGTAAACTGTATAATATTTCCTATGGTATATTTACGCTGGATACAGCCAAAGCTTGAAAGCTGAACTTTTATTTTGCCCTTTTGCTTTGAAGCAGCGTAATAACTTGTTTTATACTAGCTCTCTGAGGTGCTGCAATATCTGCATATAGTTAGTGGAGAAGTATGCACTATACAAAATTTCACTTCATTTACTTCTGTATTTAAGGTCCTAAATTAGCCAATAGTTGCATACTTCTCCATCCAACCCATAAATGAACAAACGGAGTCGTCAAGACATCTAATTTTCTGAAATTGGAACATCAATTTTTTAGACTTCTTTTTTAATTAGCAACTACATAAAAAGTACTAAAAATCCCAACTTTTTGGTATCTTTAGAACGTAAATATGTTAATTTTATTTTTAGAAAAACAACCTTTAGAAGTGCATAAAAAGCAGGATAAATAATAACTTTGTATAGTTAAAAGAAAAAAGAAACTGCTTGATCCCCTAATGGTTGCCAAAAAAAGATATTTAGATGGAGGAAGAACTTCGGAGTATTAGAGATGGAGGTGTTGAGACACAACAAACTTCAAATTTGAGACTGAGACCATGGGAAAGGGTTGTTGCTGAGAGAAGGAAACAGCATTCTCTGGTATTGCTTTAGGGAGTTTGTAAGTGTCCCTTCCAAGAGATTTTTTTTTATTATTATAGATATGAGATTGGATAAACTGGATGTGAAAATAGTTCTTGGAGAATCTATCAAATTAGGACATAGTCAAGAGGAACCAAATGTAGTGTTAATTGGATTTGTTAGAATAGGAATAGGATTATATAAAGCTATTCCTATTCTAATAGGATTGTATAAACCTATTTCTATTTCAATAGAATCATATAAACCTATTCCTATTCTAACAGGATTGTCTCTATCAGTTGTAATTGAGACAAGCCCATAATACCAGATCTTTGCTGGTAGAACTTGTGTAACCCTCAAAGTCCAGTAAAGTAGGTTCCAGAGCCTGCAATTTTGGCCTATAATGAAGGTATGATAAAGATGGTGTGAGCTGCTGAATAAAGTGTGACTTAAAGGTGAACGAGCATGAGATAACTCAAGTTCAAAGATCGAATGTCAGGGAAGAAATACAAAGTCAAGTAAAGGCAGGACATCAGATTTAAATGCAGTTAAATTATCAAATTCTTTTATATTGCAAAAAATATAAATTAGTAGTAATATAATTGTTAATACAACAGAAAAGTAAGTAGGTTTTTCAGTTTTTGGCTTTACGGCTTTAGGATTAACAATAATATATTATGGCAAAATATTATGAGGCTAATATATCTAAGATAAAAGTTGAAATATGGTGACTCTTCACTGGTTAATAGTTTACCGGATAAGGAAATTGAATCATCACCCCACACCAATAAGCTATTAATTATAAAATTATAATCCGTTAACCAACCGTTTATTCGATAACCCAATACCAATAAGCCAATTTTACGTATTGGCTACTGTTCGATTTAGAACAGCCCTAGTGCAAAACTTAACATTCATGGATTGTGGTTTATATCAGGTTTTGGTTTTTCTTTTAGGCTACAATATTCAATAGTGATGTATTTCGTAATTCATTCTCACGTGCAACACTTGGACACATAAAAATGCTCTCTTAAGTGTGTATCATATGTCATCTAAACGCTGATTAAGTTTTCTTGCTCTTATTGAACTTTTGGTCTAACTTTATTTAATCGATTTCATGAAACTTTTGGAAACTCTCATAGAAGGGTCTTTTTAACTATCCATTACACGAAGTAACATTCTTGTGAATGAACTTTTCAGGTTGTTGGTTGGAAAGGTGCTGGAGGATCTGGCAGTGAGAATTCAAAACTTTTTAATTCTTTTGAAGACAATCAAGAAGAATATGACTGGAATGATCTAGAAACCGATCTTTACCATTGGACAAAGACTTTACGACCAGTTCAGGTATGCTCAGGGTGTGGACTTGACCTTGACCTTCTGTATGTTTCAAAATTTTTATGTGTTCCCCTGTTGAATGGTTGACCTTACACTATGTGTCTATTATTTAAATAGTGGTATCCTGGTCATATCGCGAAAACTGAGAAAGAGCTCAAGGAACAGTTGAAACTAATGGATGTTGTCATAGAGGTTCGAGATGCAAGAATCCCGATGTCCACAAGTCATCCACAGGTTAGAAACTTGTTTATGCTTTGCCTGTTTACTCTTTGGCTAGATTATTGAATGTTTTGTTATATTTGCATTTTCGCTAGGGTATTGAGTGATGTGCTAGTAACCTAGCCTGCTTTCCCAACAGCTAGGTAGATGTGGCCCACTGTGCCATCCTAAACTATCTTTACCACTTAAGACTTGTTGTGTAAAAGTTGAGTGTTGCAAACAGCTTAAGAACTCAATCATTATATTTTATTTTAATTGGAGAATGTGTTTAAGAGTACTTTTTTTTTTTTTTGAGATTGGTAACTTTGTGCTTAGGAGTACATTTCACTTTTGAGATCTGAATTATGCTTGACAATTCTGATTAGAAATGGGACTGCTTGGTATTCTGCATATGGATTGCCTCTATAACACTGGCCAGCTATTTTCCGCTTAGCCTGGCCTATTCTTTCTACATCGCTTGTGATTAGTATAAACTGATACTCCATCTGAGAGTTTTCCTCGTCTGGCTTAGAAATGTGCCTATTGAATTGCAGTTTAATCACTTCAGGGATTGTGTTTTGAACTTTGGAAATTAATAATATACTTAACAAAAACTTTGATCACTTTGATGGTTTGCAGCTATAAAGACTAGATTACTCATAGGTATCACTTTGACCCTGTTCTCCTTTGGCATAGCCAAACAAGAGCAAATGAGATGTAGGAAAAATTTTCCAATGATGCAAAGAGCGTGCTATGAAGTAGATACTCAAGAATCTCGTTTGAATCAGGATAGAGTATGCATGTGCAGTCCATAATTCCTTTTCTTGACTTCAATTCAGTATACCAGACTCCTATTGCATATGAGATTCTTTTTTCGTCTCCTTTCAACTTTCATCTATTTTGTTTTGTTAGTAATTCAACTTTGATAAGCAGATGGACTCATGGCTTGGCAACAGAAAGAGGATCTTGGTTTTGAATCGAGAGGATATGATATCAACTGCTGATCGGAATGCTTGGGCAACTTATTATGCTAATCAAGGGATTAAAGTTGTTTTCTCCAATGGCCAGCTTGGAATGGTGATTGGAATAACATTTACTTGTTTCTGATCCAACAAAAAGTCGTTGTATACTTTGTTGATTCATGTATTCGACAAATTTCAGGGAGCACTGAAGCTTGGAAGGTTGGCGAAAGCATTAGCGGGTACTGTAAACATAAAACGTAAAGCAAAAGGACTACTTCCTCGCCCAGTGAGTCTACTAAGATTGACAATATCTCATATCATCTATGCCTTTAGACTGCAGATCTGTTGTGAGCGCATTGCAATTGTCAAGACAAATGAAACTTAAATGGTTACTTACTTTCAATCCATCAAATTCAGTTGGTCTGTGACTGATGTTAGCAATCTAATTCTGATTTTTTAACTGTATATGTTATCTTCACCATTTACATCTTGACCATCAGAAGCATTTAAACTGGTCGATCTGTGTGAGCACATTTCAATTTTCAAGTACCAATGATTTTATTCATTCAAACCACCAATTCGGTTGGCTCATGAATAATGCCAGAACTCTTATTGTGATTTTGTATTTAATCTGTAATTTTCATGAATTTACAATTTTACATATAGACCATTGGAAGGACCCACTGTGATATAAAAGAAATGCAAGGAGTTCAATGGCGAACATCGAAGTCTTACCGTCTGATAATTTGGGTTTAATGAGTGTACACCAGGGAAAAGTGTTATTCTGCTGCTGTAATCTTGTATCAATGTGCTGATGAACAACATATGTAAAATATGTAACAGAATATAAAATTCTTATTTGGTTCACTAGTAGATGAAATGACAAAATTATGGAATTACATCCTTTGTTAGGATGTTCATGTCTGCTTCTTCTGTGTTAGTTTTTTCTGAGTGAGAATTTTGTATATTTTGACAGGTTCGAGCTGGTGTAGTTGGGTATCCAAATGTTGGTAAGTCATCTCTGGTAAATCGTTTGCTGAAGCGCCGGATGTGTGCTGCAGCCCCAAGACCAGGTGTCACCAG</genome_strand>
        <mrna_strand>GTTGCTGAACAGCGCTGGCCTTACACTCGCCGGCGCCCGGTCTCTTAGTTGCCGGAACAATCAACCACCGGCAGCTATCTCCTCTGCCAACCCTCCTTCTCTCTCTTCCACAATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGTTGGAAAGGTGCTGGAGGATCTGGCAGTGAGAATTCAAAACTTTTTAATTCTTTTGAAGACAATCAAGAAGAATATGACTGGAATGATCTAGAAACCGATCTTTACCATTGGACAAAGACTTTACGACCAGTTCAG............................................................................................................TGGTATCCTGGTCATATCGCGAAAACTGAGAAAGAGCTCAAGGAACAGTTGAAACTAATGGATGTTGTCATAGAGGTTCGAGATGCAAGAATCCCGATGTCCACAAGTCATCCACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACTCATGGCTTGGCAACAGAAAGAGGATCTTGGTTTTGAATCGAGAGGATATGATATCAACTGCTGATCGGAATGCTTGGGCAACTTATTATGCTAATCAAGGGATTAAAGTTGTTTTCTCCAATGGCCAGCTTGGAATG....................................................................................GGAGCACTGAAGCTTGGAAGGTTGGCGAAAGCATTAGCGGGTACTGTAAACATAAAACGTAAAGCAAAAGGACTACTTCCTCGCCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGAGCTGGTGTAGTTGGGTATCCAAATNGTGGTAAGTCATCTCTGGTAAATCGTTTGCTGAAGCGCCGGATGTGTGCTGCAGCCCCAAGACCANGTGTCACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439480" ref_strand="+" ref_description="SGN-E439480 [cSTA-12-E18]">
      <seq>cgaggtagaaaccgatctttaccattggacaaagactttacgaacagttcagtggtatcctggtcatatcgcgaaaactgagaaagagctcaaggaacagttgaaactaatggatgttgtcatagaggttcgagatgcaagaatcccgatgtccacaagtcatccacagatggactcatggcttggcaacagaaagaggattttggttttgaatcgagaggatatgatatcaactgctgatcggaatgcttgggcaacttattatgctaatcaagggattaaagttgttttctccaatggccagcttggaatgggagcactgaagcttggaaggttggcgaaagcattagcgggtcctgtgaacataaaacgtaaagcaaaaggactacttcctcgcccagttcgagctggtgtagttgggtatccaaatgttggtaagtcatctctggtaaatcgtttgctgaagcgccggatgtgtgctgcagccccaagaccaggtgttaccagagagctgaagtgggtccgttttgggaaagatctagagctactggattcacctggcataattcctatgaggatcagtgatcagacagcagcaataaagcttgccatatgtgatgatattggagagagatcttatgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81242" stop="84697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81541" g_stop="81592" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81593" i_stop="81700" i_length="108">
            <donor d_prob="0.796" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81701" g_stop="81817" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="169" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81818" i_stop="82714" i_length="897">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82715" g_stop="82858" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="313" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82859" i_stop="82942" i_length="84">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82943" g_stop="83029" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="400" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83030" i_stop="83719" i_length="690">
            <donor d_prob="0.938" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83720" g_stop="83835" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="516" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83836" i_stop="84268" i_length="433">
            <donor d_prob="0.868" d_score="0.98"/>
            <acceptor a_prob="0.742" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="84269" g_stop="84398" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="646" r_length="130" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E439480" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81541" e_stop="81592"/>
          <exon e_start="81701" e_stop="81817"/>
          <exon e_start="82715" e_stop="82858"/>
          <exon e_start="82943" e_stop="83029"/>
          <exon e_start="83720" e_stop="83835"/>
          <exon e_start="84269" e_stop="84398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTAGAAACCGATCTTTACCATTGGACAAAGACTTTACGACCAGTTCAGGTATGCTCAGGGTGTGGACTTGACCTTGACCTTCTGTATGTTTCAAAATTTTTATGTGTTCCCCTGTTGAATGGTTGACCTTACACTATGTGTCTATTATTTAAATAGTGGTATCCTGGTCATATCGCGAAAACTGAGAAAGAGCTCAAGGAACAGTTGAAACTAATGGATGTTGTCATAGAGGTTCGAGATGCAAGAATCCCGATGTCCACAAGTCATCCACAGGTTAGAAACTTGTTTATGCTTTGCCTGTTTACTCTTTGGCTAGATTATTGAATGTTTTGTTATATTTGCATTTTCGCTAGGGTATTGAGTGATGTGCTAGTAACCTAGCCTGCTTTCCCAACAGCTAGGTAGATGTGGCCCACTGTGCCATCCTAAACTATCTTTACCACTTAAGACTTGTTGTGTAAAAGTTGAGTGTTGCAAACAGCTTAAGAACTCAATCATTATATTTTATTTTAATTGGAGAATGTGTTTAAGAGTACTTTTTTTTTTTTTTGAGATTGGTAACTTTGTGCTTAGGAGTACATTTCACTTTTGAGATCTGAATTATGCTTGACAATTCTGATTAGAAATGGGACTGCTTGGTATTCTGCATATGGATTGCCTCTATAACACTGGCCAGCTATTTTCCGCTTAGCCTGGCCTATTCTTTCTACATCGCTTGTGATTAGTATAAACTGATACTCCATCTGAGAGTTTTCCTCGTCTGGCTTAGAAATGTGCCTATTGAATTGCAGTTTAATCACTTCAGGGATTGTGTTTTGAACTTTGGAAATTAATAATATACTTAACAAAAACTTTGATCACTTTGATGGTTTGCAGCTATAAAGACTAGATTACTCATAGGTATCACTTTGACCCTGTTCTCCTTTGGCATAGCCAAACAAGAGCAAATGAGATGTAGGAAAAATTTTCCAATGATGCAAAGAGCGTGCTATGAAGTAGATACTCAAGAATCTCGTTTGAATCAGGATAGAGTATGCATGTGCAGTCCATAATTCCTTTTCTTGACTTCAATTCAGTATACCAGACTCCTATTGCATATGAGATTCTTTTTTCGTCTCCTTTCAACTTTCATCTATTTTGTTTTGTTAGTAATTCAACTTTGATAAGCAGATGGACTCATGGCTTGGCAACAGAAAGAGGATCTTGGTTTTGAATCGAGAGGATATGATATCAACTGCTGATCGGAATGCTTGGGCAACTTATTATGCTAATCAAGGGATTAAAGTTGTTTTCTCCAATGGCCAGCTTGGAATGGTGATTGGAATAACATTTACTTGTTTCTGATCCAACAAAAAGTCGTTGTATACTTTGTTGATTCATGTATTCGACAAATTTCAGGGAGCACTGAAGCTTGGAAGGTTGGCGAAAGCATTAGCGGGTACTGTAAACATAAAACGTAAAGCAAAAGGACTACTTCCTCGCCCAGTGAGTCTACTAAGATTGACAATATCTCATATCATCTATGCCTTTAGACTGCAGATCTGTTGTGAGCGCATTGCAATTGTCAAGACAAATGAAACTTAAATGGTTACTTACTTTCAATCCATCAAATTCAGTTGGTCTGTGACTGATGTTAGCAATCTAATTCTGATTTTTTAACTGTATATGTTATCTTCACCATTTACATCTTGACCATCAGAAGCATTTAAACTGGTCGATCTGTGTGAGCACATTTCAATTTTCAAGTACCAATGATTTTATTCATTCAAACCACCAATTCGGTTGGCTCATGAATAATGCCAGAACTCTTATTGTGATTTTGTATTTAATCTGTAATTTTCATGAATTTACAATTTTACATATAGACCATTGGAAGGACCCACTGTGATATAAAAGAAATGCAAGGAGTTCAATGGCGAACATCGAAGTCTTACCGTCTGATAATTTGGGTTTAATGAGTGTACACCAGGGAAAAGTGTTATTCTGCTGCTGTAATCTTGTATCAATGTGCTGATGAACAACATATGTAAAATATGTAACAGAATATAAAATTCTTATTTGGTTCACTAGTAGATGAAATGACAAAATTATGGAATTACATCCTTTGTTAGGATGTTCATGTCTGCTTCTTCTGTGTTAGTTTTTTCTGAGTGAGAATTTTGTATATTTTGACAGGTTCGAGCTGGTGTAGTTGGGTATCCAAATGTTGGTAAGTCATCTCTGGTAAATCGTTTGCTGAAGCGCCGGATGTGTGCTGCAGCCCCAAGACCAGGTGTCACCAGAGAGCTGAAGTATGTCCGTAGCTCCTTACTCTTTTCTTTTGCAGCAAGTTCATTCGACATTTGATTCCATGAGAAGGCCCACAAAATTTTGATCCAAAGCGTGTATCTCTTCTTTACTTTCAAGTGACAACGGAGTGACAGGGTTGTACCTTCTTCTCTATTTCACCATCTCATTCTGACTCCTTTTGAACCGCTTGGATTTCCAGTCATTTTAACATCAAGCATTACATAGAAATTGATAGGAGTACCTTTTTAATATATAGGAATCTATTTTTCAAAAAATTTGATATGCTAAGTCGAACTGAGTGAATATTTTCAGCATAGTTAGTTCCATGTAATTGTTATGCAAGAAGGAAGACTATCATCAATTTAATTTCAAAAGACTGGGTTAGATTTTGGACTCTTCTTCCTTTTGATTGTCTACGGCTCATTTTATTAAAAGGTGGGTCCGTTTTGGGAAAGATCTAGAGCTACTGGATTCACCTGGTATAATTCCTATGAGGATCAGTGATCAGACAGCAGCAATAAAGCTTGCCATATGTGATGATATTGGAGAGAGATCTTATGATGCC</genome_strand>
        <mrna_strand>CGAGGTAGAAACCGATCTTTACCATTGGACAAAGACTTTACGAACAGTTCAG............................................................................................................TGGTATCCTGGTCATATCGCGAAAACTGAGAAAGAGCTCAAGGAACAGTTGAAACTAATGGATGTTGTCATAGAGGTTCGAGATGCAAGAATCCCGATGTCCACAAGTCATCCACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACTCATGGCTTGGCAACAGAAAGAGGATTTTGGTTTTGAATCGAGAGGATATGATATCAACTGCTGATCGGAATGCTTGGGCAACTTATTATGCTAATCAAGGGATTAAAGTTGTTTTCTCCAATGGCCAGCTTGGAATG....................................................................................GGAGCACTGAAGCTTGGAAGGTTGGCGAAAGCATTAGCGGGTCCTGTGAACATAAAACGTAAAGCAAAAGGACTACTTCCTCGCCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGAGCTGGTGTAGTTGGGTATCCAAATGTTGGTAAGTCATCTCTGGTAAATCGTTTGCTGAAGCGCCGGATGTGTGCTGCAGCCCCAAGACCAGGTGTTACCAGAGAGCTGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTCCGTTTTGGGAAAGATCTAGAGCTACTGGATTCACCTGGCATAATTCCTATGAGGATCAGTGATCAGACAGCAGCAATAAAGCTTGCCATATGTGATGATATTGGAGAGAGATCTTATGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389915" ref_strand="+" ref_description="SGN-E389915 [TUS-4-M1]">
      <seq>cttcctcgcccagttcgagctggtgtagttgggtatccaaatgttggtaagtcatctctggtaaatcgtttgctgaagcgccggatgtgtgctgcagccccaagaccaggtgtcaccagagagctgaagtgggtccgttttgggaaagatctagagctactggattcacctggtataattcctatgaggatcagtgatcagacagcagcaataaagcttgccatatgtgatgatattggagagagatcttatgatgccgcagatgttgcagctattcttgtacagatgctttcagggcttccaactgttggtaataaagttctgtgtgaccgctacaagattgaggcagatgggcgcagtggtaaaatgtgtgtatggcaaattatacccaaagggtgtatctgaagtatgagttcccctgcaaggatttgttctatatttccattttgatctttgtttgttttggttgaagatttgttcagaagctggctgttcagttattcaatgcggacaataatcaagcagcatttcgtattttgcaagatttccggaaagggaaatttggttggatagcactagagcggccacccaagtagagctgtgcgtttcataccttgttctagtgctttcatgtatatcagttaaagctggtggaaaattcttggaagcttncacatagaagtacctagacggagaaaaccaggaagaagctgttggcatcttcacctgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83417" stop="85464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83720" g_stop="83835" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="128" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83836" i_stop="84268" i_length="433">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.742" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84269" g_stop="84450" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="310" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84451" i_stop="84742" i_length="292">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84743" g_stop="85164" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="732" r_length="422" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E389915" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83720" e_stop="83835"/>
          <exon e_start="84269" e_stop="84450"/>
          <exon e_start="84743" e_stop="85164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGAGCTGGTGTAGTTGGGTATCCAAATGTTGGTAAGTCATCTCTGGTAAATCGTTTGCTGAAGCGCCGGATGTGTGCTGCAGCCCCAAGACCAGGTGTCACCAGAGAGCTGAAGTATGTCCGTAGCTCCTTACTCTTTTCTTTTGCAGCAAGTTCATTCGACATTTGATTCCATGAGAAGGCCCACAAAATTTTGATCCAAAGCGTGTATCTCTTCTTTACTTTCAAGTGACAACGGAGTGACAGGGTTGTACCTTCTTCTCTATTTCACCATCTCATTCTGACTCCTTTTGAACCGCTTGGATTTCCAGTCATTTTAACATCAAGCATTACATAGAAATTGATAGGAGTACCTTTTTAATATATAGGAATCTATTTTTCAAAAAATTTGATATGCTAAGTCGAACTGAGTGAATATTTTCAGCATAGTTAGTTCCATGTAATTGTTATGCAAGAAGGAAGACTATCATCAATTTAATTTCAAAAGACTGGGTTAGATTTTGGACTCTTCTTCCTTTTGATTGTCTACGGCTCATTTTATTAAAAGGTGGGTCCGTTTTGGGAAAGATCTAGAGCTACTGGATTCACCTGGTATAATTCCTATGAGGATCAGTGATCAGACAGCAGCAATAAAGCTTGCCATATGTGATGATATTGGAGAGAGATCTTATGATGCCGCAGATGTTGCAGCTATTCTTGTACAGATGCTTTCAGGGCTTCCAACTGTTGGTATGTTTCCTGTCATTCAGATAACACATGCTATTCACTCGTGTAGGTAGATTTCTTTTTGTAATACGTTGCTGAAGACACTGTGCGTCAGAATTCATTACCGGATCTTATTTAGATGATAAGACTAATTACTCATCCTGATAGATACTTATTGCACCTAAGCTTGCACTTTGAGCCTCTTGTATGTAACAACTCATTTGCATTAGGGATTGGCTGTCCCTAAATAGTTCATTTTTTAAGCTTCTTGTATGCATGCTGTCTTATATTTTTCTGACATGGGTCCTCTGACCAGGTAATAAAGTTCTGTGTGACCGCTACAAGATTGAGGCAGATGGGCGCAGTGGTAAAATGTGTGTATGGCAAATTATACCCAAAGGGTGTATCTGAAGTATGAGTTCCCCTGCAAGGATTTGTTCTATATTTCCATTTTGATCTTTGTTTGTTTTGGTTGAAGATTTGTTCAGAAGCTGGCTGTTCAGTTATTCAATGCGGACAATAATCAAGCAGCATTTCGTATTTTGCAAGATTTCCGGAAAGGGAAATTTGGTTGGATAGCACTAGAGCGGCCACCCAAGTAGAGCTGTGCGTTTCATACCTTGTTCTAGTGCTTTCATGTATATCAGTTAAAGCTGGTGGAAAATTCTTGGAAGCTTCAACATAGAAGTACCTAGACGGAGAAAACCAGGAAGAAGCTGTTGGCATCTTCACCTGCAA</genome_strand>
        <mrna_strand>GTTCGAGCTGGTGTAGTTGGGTATCCAAATGTTGGTAAGTCATCTCTGGTAAATCGTTTGCTGAAGCGCCGGATGTGTGCTGCAGCCCCAAGACCAGGTGTCACCAGAGAGCTGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTCCGTTTTGGGAAAGATCTAGAGCTACTGGATTCACCTGGTATAATTCCTATGAGGATCAGTGATCAGACAGCAGCAATAAAGCTTGCCATATGTGATGATATTGGAGAGAGATCTTATGATGCCGCAGATGTTGCAGCTATTCTTGTACAGATGCTTTCAGGGCTTCCAACTGTTG....................................................................................................................................................................................................................................................................................................GTAATAAAGTTCTGTGTGACCGCTACAAGATTGAGGCAGATGGGCGCAGTGGTAAAATGTGTGTATGGCAAATTATACCCAAAGGGTGTATCTGAAGTATGAGTTCCCCTGCAAGGATTTGTTCTATATTTCCATTTTGATCTTTGTTTGTTTTGGTTGAAGATTTGTTCAGAAGCTGGCTGTTCAGTTATTCAATGCGGACAATAATCAAGCAGCATTTCGTATTTTGCAAGATTTCCGGAAAGGGAAATTTGGTTGGATAGCACTAGAGCGGCCACCCAAGTAGAGCTGTGCGTTTCATACCTTGTTCTAGTGCTTTCATGTATATCAGTTAAAGCTGGTGGAAAATTCTTGGAAGCTTNCACATAGAAGTACCTAGACGGAGAAAACCAGGAAGAAGCTGTTGGCATCTTCACCTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550029" ref_strand="+" ref_description="SGN-E550029 [TUS-5-M1]">
      <seq>cttcctcgcccagttcgagctggtgtagttgggtatccaaatgttggtaagtcatctctggtaaatcgtttgctgaagcgccggatgtgtgctgcagccccaagaccaggtgtcaccagagagctgaagtgggtccgttttgggaaagatctagagctactggattcacctggtataattcctatgaggatcagtgatcagacagcagcaataaagcttgccatatgtgatgatattggagagagatcttatgatgccgcagatgttgcagctattcttgtacagatgctttcagggcttccaactgttggtaataaagttctgtgtgaccgctacaagattgaggcagatgggcgcagtggtaaaatgtgtgtatggcaaattatacccaaagggtgtatctgaagtatgagttcccctgcaaggatttgttctatatttccattttgatctttgtttgttttggttgaagatttgttcagaagctggctgttcagttattcaatgcggacaataatcaagcagcatttcgtattttgcaagatttccggaaagggaaatttggttggatagcactagagcggccacccaagtagagctgtgcgtttcataccttgttctagtgctttcatgtatatcagttaaagctggtcggaaattcttgggagcttcaacatagaagtacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83417" stop="85419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83720" g_stop="83835" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="128" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83836" i_stop="84268" i_length="433">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.742" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84269" g_stop="84450" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="310" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84451" i_stop="84742" i_length="292">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84743" g_stop="85119" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="687" r_length="377" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E550029" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83720" e_stop="83835"/>
          <exon e_start="84269" e_stop="84450"/>
          <exon e_start="84743" e_stop="85119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGAGCTGGTGTAGTTGGGTATCCAAATGTTGGTAAGTCATCTCTGGTAAATCGTTTGCTGAAGCGCCGGATGTGTGCTGCAGCCCCAAGACCAGGTGTCACCAGAGAGCTGAAGTATGTCCGTAGCTCCTTACTCTTTTCTTTTGCAGCAAGTTCATTCGACATTTGATTCCATGAGAAGGCCCACAAAATTTTGATCCAAAGCGTGTATCTCTTCTTTACTTTCAAGTGACAACGGAGTGACAGGGTTGTACCTTCTTCTCTATTTCACCATCTCATTCTGACTCCTTTTGAACCGCTTGGATTTCCAGTCATTTTAACATCAAGCATTACATAGAAATTGATAGGAGTACCTTTTTAATATATAGGAATCTATTTTTCAAAAAATTTGATATGCTAAGTCGAACTGAGTGAATATTTTCAGCATAGTTAGTTCCATGTAATTGTTATGCAAGAAGGAAGACTATCATCAATTTAATTTCAAAAGACTGGGTTAGATTTTGGACTCTTCTTCCTTTTGATTGTCTACGGCTCATTTTATTAAAAGGTGGGTCCGTTTTGGGAAAGATCTAGAGCTACTGGATTCACCTGGTATAATTCCTATGAGGATCAGTGATCAGACAGCAGCAATAAAGCTTGCCATATGTGATGATATTGGAGAGAGATCTTATGATGCCGCAGATGTTGCAGCTATTCTTGTACAGATGCTTTCAGGGCTTCCAACTGTTGGTATGTTTCCTGTCATTCAGATAACACATGCTATTCACTCGTGTAGGTAGATTTCTTTTTGTAATACGTTGCTGAAGACACTGTGCGTCAGAATTCATTACCGGATCTTATTTAGATGATAAGACTAATTACTCATCCTGATAGATACTTATTGCACCTAAGCTTGCACTTTGAGCCTCTTGTATGTAACAACTCATTTGCATTAGGGATTGGCTGTCCCTAAATAGTTCATTTTTTAAGCTTCTTGTATGCATGCTGTCTTATATTTTTCTGACATGGGTCCTCTGACCAGGTAATAAAGTTCTGTGTGACCGCTACAAGATTGAGGCAGATGGGCGCAGTGGTAAAATGTGTGTATGGCAAATTATACCCAAAGGGTGTATCTGAAGTATGAGTTCCCCTGCAAGGATTTGTTCTATATTTCCATTTTGATCTTTGTTTGTTTTGGTTGAAGATTTGTTCAGAAGCTGGCTGTTCAGTTATTCAATGCGGACAATAATCAAGCAGCATTTCGTATTTTGCAAGATTTCCGGAAAGGGAAATTTGGTTGGATAGCACTAGAGCGGCCACCCAAGTAGAGCTGTGCGTTTCATACCTTGTTCTAGTGCTTTCATGTATATCAGTTAAAGCTGGTGGAAAATTCTTGGAAGCTTCAACATAGAAGTACCT</genome_strand>
        <mrna_strand>GTTCGAGCTGGTGTAGTTGGGTATCCAAATGTTGGTAAGTCATCTCTGGTAAATCGTTTGCTGAAGCGCCGGATGTGTGCTGCAGCCCCAAGACCAGGTGTCACCAGAGAGCTGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTCCGTTTTGGGAAAGATCTAGAGCTACTGGATTCACCTGGTATAATTCCTATGAGGATCAGTGATCAGACAGCAGCAATAAAGCTTGCCATATGTGATGATATTGGAGAGAGATCTTATGATGCCGCAGATGTTGCAGCTATTCTTGTACAGATGCTTTCAGGGCTTCCAACTGTTG....................................................................................................................................................................................................................................................................................................GTAATAAAGTTCTGTGTGACCGCTACAAGATTGAGGCAGATGGGCGCAGTGGTAAAATGTGTGTATGGCAAATTATACCCAAAGGGTGTATCTGAAGTATGAGTTCCCCTGCAAGGATTTGTTCTATATTTCCATTTTGATCTTTGTTTGTTTTGGTTGAAGATTTGTTCAGAAGCTGGCTGTTCAGTTATTCAATGCGGACAATAATCAAGCAGCATTTCGTATTTTGCAAGATTTCCGGAAAGGGAAATTTGGTTGGATAGCACTAGAGCGGCCACCCAAGTAGAGCTGTGCGTTTCATACCTTGTTCTAGTGCTTTCATGTATATCAGTTAAAGCTGGTCGGAAATTCTTGGGAGCTTCAACATAGAAGTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228189" ref_strand="+" ref_description="SGN-E228189 [cLED-2-M19]">
      <seq>ttcctcgcccagttcgagctggtgtagttgggtatccaaatgttggtaagtcatctctggtaaatcgtttgctgaagcgccggatgtgtgctgcagccccaagaccaggtgtcaccagagagctgaagtgggtccgttttgggaaagatctagagctactggattcacctggtataattcctatgaggatcagtgatcagacagcagcaataaagcttgccatatgtgatgatattggagagagatcttatgatgccgcagatgttgcagctattcttgtacagatgctttcagggcttccaactgttggtaataaagttctgtgtgaccgctacaagattgaggcagatgggcgcagtggtaaaatgtgtgtatggcaaattatacccaaagggtgtatctgaagtatgagttcccctgcaaggatttgttctatatttccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83417" stop="85178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83720" g_stop="83835" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="127" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83836" i_stop="84268" i_length="433">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.742" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84269" g_stop="84450" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="309" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84451" i_stop="84742" i_length="292">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84743" g_stop="84878" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="445" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E228189" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83720" e_stop="83835"/>
          <exon e_start="84269" e_stop="84450"/>
          <exon e_start="84743" e_stop="84878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGAGCTGGTGTAGTTGGGTATCCAAATGTTGGTAAGTCATCTCTGGTAAATCGTTTGCTGAAGCGCCGGATGTGTGCTGCAGCCCCAAGACCAGGTGTCACCAGAGAGCTGAAGTATGTCCGTAGCTCCTTACTCTTTTCTTTTGCAGCAAGTTCATTCGACATTTGATTCCATGAGAAGGCCCACAAAATTTTGATCCAAAGCGTGTATCTCTTCTTTACTTTCAAGTGACAACGGAGTGACAGGGTTGTACCTTCTTCTCTATTTCACCATCTCATTCTGACTCCTTTTGAACCGCTTGGATTTCCAGTCATTTTAACATCAAGCATTACATAGAAATTGATAGGAGTACCTTTTTAATATATAGGAATCTATTTTTCAAAAAATTTGATATGCTAAGTCGAACTGAGTGAATATTTTCAGCATAGTTAGTTCCATGTAATTGTTATGCAAGAAGGAAGACTATCATCAATTTAATTTCAAAAGACTGGGTTAGATTTTGGACTCTTCTTCCTTTTGATTGTCTACGGCTCATTTTATTAAAAGGTGGGTCCGTTTTGGGAAAGATCTAGAGCTACTGGATTCACCTGGTATAATTCCTATGAGGATCAGTGATCAGACAGCAGCAATAAAGCTTGCCATATGTGATGATATTGGAGAGAGATCTTATGATGCCGCAGATGTTGCAGCTATTCTTGTACAGATGCTTTCAGGGCTTCCAACTGTTGGTATGTTTCCTGTCATTCAGATAACACATGCTATTCACTCGTGTAGGTAGATTTCTTTTTGTAATACGTTGCTGAAGACACTGTGCGTCAGAATTCATTACCGGATCTTATTTAGATGATAAGACTAATTACTCATCCTGATAGATACTTATTGCACCTAAGCTTGCACTTTGAGCCTCTTGTATGTAACAACTCATTTGCATTAGGGATTGGCTGTCCCTAAATAGTTCATTTTTTAAGCTTCTTGTATGCATGCTGTCTTATATTTTTCTGACATGGGTCCTCTGACCAGGTAATAAAGTTCTGTGTGACCGCTACAAGATTGAGGCAGATGGGCGCAGTGGTAAAATGTGTGTATGGCAAATTATACCCAAAGGGTGTATCTGAAGTATGAGTTCCCCTGCAAGGATTTGTTCTATATTTCCATT</genome_strand>
        <mrna_strand>GTTCGAGCTGGTGTAGTTGGGTATCCAAATGTTGGTAAGTCATCTCTGGTAAATCGTTTGCTGAAGCGCCGGATGTGTGCTGCAGCCCCAAGACCAGGTGTCACCAGAGAGCTGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTCCGTTTTGGGAAAGATCTAGAGCTACTGGATTCACCTGGTATAATTCCTATGAGGATCAGTGATCAGACAGCAGCAATAAAGCTTGCCATATGTGATGATATTGGAGAGAGATCTTATGATGCCGCAGATGTTGCAGCTATTCTTGTACAGATGCTTTCAGGGCTTCCAACTGTTG....................................................................................................................................................................................................................................................................................................GTAATAAAGTTCTGTGTGACCGCTACAAGATTGAGGCAGATGGGCGCAGTGGTAAAATGTGTGTATGGCAAATTATACCCAAAGGGTGTATCTGAAGTATGAGTTCCCCTGCAAGGATTTGTTCTATATTTCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389657" ref_strand="+" ref_description="SGN-E389657 [TUS-4-M1](-)">
      <seq>acaagattgaggcagatgggcgcagtggtaaaatgtgtgtatggcaaattatacccaaagggtgtatctgaagtatgagttcccctgcaaggatttgttctatatttccattttgatctttgtttgttttggttgaagatttgttcagaagctggctgttcagttattcaatgcggacaataatcaagcagcatttcgtattttgcaagatttccggaaagggaaatttggttggatagcactagagcggccacccaagtagagctgtgcgtttcataccttgttctagtgctttcatgtatatcagttaaagctggtggaaaattcttggaagcttcaacatagaagtacctagacggagaaaaccaggaagaagctgttggcatcttcacctgcaagctggaaaggtatatatacaccattgaacctactcaatgaagctaacctacggtgtaattggttctttagttccattagtgtgaggcagcaatgatgagtttggtttataattgtcagttgtaactgttatcttcagacgactaaattatagtttggctacaattccatcagttggaatttgctgaaacatttcaactttagttatctacctgctgtaaatatgaaggtggtgatgtagactgtcattagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84467" stop="85715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84767" g_stop="85415" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E389657" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84767" e_stop="85415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGATTGAGGCAGATGGGCGCAGTGGTAAAATGTGTGTATGGCAAATTATACCCAAAGGGTGTATCTGAAGTATGAGTTCCCCTGCAAGGATTTGTTCTATATTTCCATTTTGATCTTTGTTTGTTTTGGTTGAAGATTTGTTCAGAAGCTGGCTGTTCAGTTATTCAATGCGGACAATAATCAAGCAGCATTTCGTATTTTGCAAGATTTCCGGAAAGGGAAATTTGGTTGGATAGCACTAGAGCGGCCACCCAAGTAGAGCTGTGCGTTTCATACCTTGTTCTAGTGCTTTCATGTATATCAGTTAAAGCTGGTGGAAAATTCTTGGAAGCTTCAACATAGAAGTACCTAGACGGAGAAAACCAGGAAGAAGCTGTTGGCATCTTCACCTGCAAGCTGGAAAGGTATATATACACCATTGAACCTACTCAATGAAGCTAACCTACGGTGTAATTGGTTCTTTAGTTCCATTAGTGTGAGGCAGCAATGATGAGTTTGGTTTATAATTGTCAGTTGTAACTGTTATCTTCAGACGACTAAATTATAGTTTGGCTACAATTCCATCAGTTGGAATTTGCTGAAACATTTCAACTTTAGTTATCTACCTGCTGTAAATATGAAGGTGGTGATGTAGACTGTCATTAGT</genome_strand>
        <mrna_strand>ACAAGATTGAGGCAGATGGGCGCAGTGGTAAAATGTGTGTATGGCAAATTATACCCAAAGGGTGTATCTGAAGTATGAGTTCCCCTGCAAGGATTTGTTCTATATTTCCATTTTGATCTTTGTTTGTTTTGGTTGAAGATTTGTTCAGAAGCTGGCTGTTCAGTTATTCAATGCGGACAATAATCAAGCAGCATTTCGTATTTTGCAAGATTTCCGGAAAGGGAAATTTGGTTGGATAGCACTAGAGCGGCCACCCAAGTAGAGCTGTGCGTTTCATACCTTGTTCTAGTGCTTTCATGTATATCAGTTAAAGCTGGTGGAAAATTCTTGGAAGCTTCAACATAGAAGTACCTAGACGGAGAAAACCAGGAAGAAGCTGTTGGCATCTTCACCTGCAAGCTGGAAAGGTATATATACACCATTGAACCTACTCAATGAAGCTAACCTACGGTGTAATTGGTTCTTTAGTTCCATTAGTGTGAGGCAGCAATGATGAGTTTGGTTTATAATTGTCAGTTGTAACTGTTATCTTCAGACGACTAAATTATAGTTTGGCTACAATTCCATCAGTTGGAATTTGCTGAAACATTTCAACTTTAGTTATCTACCTGCTGTAAATATGAAGGTGGTGATGTAGACTGTCATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550363" ref_strand="+" ref_description="SGN-E550363 [TUS-5-M1](-)">
      <seq>acaagattgaggcagatgggcgcagtggtaaaatgtgtgtatggcaaattattcccaaagggtgtatctgaagtatgagttcccgtgcaaggatttgttctatatttccattgtgatctttgtttgttttggtagaagatttgttcagaagctggctgttcagttattcaatgcggacaataatcaagcagcatttcgtattttgcaagatttccggaaagggaaatttggttggatagcactagagcggccacccaagtagagctgtgcgtttcataccttgttctagtgctttcatgtatatcagttaaagctggtggaaaattcttggaagcttcaacatagaagtacctaggcggagaaagccaggaagaagctgttggcatcttcacctgcaagctggaaaggtatatatacaccattgaacctactcaatgaagataacgtacggtgtaattggttctttagttccattagtgtgaggcagcaatgatgagtttggtttataattgtcagttgtaactgttatcttcagacgactaaattatagtttggctacaattccatcagttggaatttgctgaaacatttcaactatagttatctacctgctgtaaatatgaaggtggtgatgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84467" stop="85703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84767" g_stop="85403" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E550363" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84767" e_stop="85403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGATTGAGGCAGATGGGCGCAGTGGTAAAATGTGTGTATGGCAAATTATACCCAAAGGGTGTATCTGAAGTATGAGTTCCCCTGCAAGGATTTGTTCTATATTTCCATTTTGATCTTTGTTTGTTTTGGTTGAAGATTTGTTCAGAAGCTGGCTGTTCAGTTATTCAATGCGGACAATAATCAAGCAGCATTTCGTATTTTGCAAGATTTCCGGAAAGGGAAATTTGGTTGGATAGCACTAGAGCGGCCACCCAAGTAGAGCTGTGCGTTTCATACCTTGTTCTAGTGCTTTCATGTATATCAGTTAAAGCTGGTGGAAAATTCTTGGAAGCTTCAACATAGAAGTACCTAGACGGAGAAAACCAGGAAGAAGCTGTTGGCATCTTCACCTGCAAGCTGGAAAGGTATATATACACCATTGAACCTACTCAATGAAGCTAACCTACGGTGTAATTGGTTCTTTAGTTCCATTAGTGTGAGGCAGCAATGATGAGTTTGGTTTATAATTGTCAGTTGTAACTGTTATCTTCAGACGACTAAATTATAGTTTGGCTACAATTCCATCAGTTGGAATTTGCTGAAACATTTCAACTTTAGTTATCTACCTGCTGTAAATATGAAGGTGGTGATGTAG</genome_strand>
        <mrna_strand>ACAAGATTGAGGCAGATGGGCGCAGTGGTAAAATGTGTGTATGGCAAATTATTCCCAAAGGGTGTATCTGAAGTATGAGTTCCCGTGCAAGGATTTGTTCTATATTTCCATTGTGATCTTTGTTTGTTTTGGTAGAAGATTTGTTCAGAAGCTGGCTGTTCAGTTATTCAATGCGGACAATAATCAAGCAGCATTTCGTATTTTGCAAGATTTCCGGAAAGGGAAATTTGGTTGGATAGCACTAGAGCGGCCACCCAAGTAGAGCTGTGCGTTTCATACCTTGTTCTAGTGCTTTCATGTATATCAGTTAAAGCTGGTGGAAAATTCTTGGAAGCTTCAACATAGAAGTACCTAGGCGGAGAAAGCCAGGAAGAAGCTGTTGGCATCTTCACCTGCAAGCTGGAAAGGTATATATACACCATTGAACCTACTCAATGAAGATAACGTACGGTGTAATTGGTTCTTTAGTTCCATTAGTGTGAGGCAGCAATGATGAGTTTGGTTTATAATTGTCAGTTGTAACTGTTATCTTCAGACGACTAAATTATAGTTTGGCTACAATTCCATCAGTTGGAATTTGCTGAAACATTTCAACTATAGTTATCTACCTGCTGTAAATATGAAGGTGGTGATGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733256" ref_strand="+" ref_description="SGN-E733256 [LB04BE12]">
      <seq>cggtagactggaagactggcggcaactgtcatcttgagaagctacctaacataggatcatcccaagagtcggtgaaaacatcatttgaatataacactgtgatcaatgtgctgtctgagaaacagaacaaatcaaaaacatggaatttggatttattgaatgtaacagggatgacatttcagagaagagacggtcactcatctttgtattacttaggtcccaaggttggaccagctcctctccaccggcaagactgcagccactggtgcctccccggtgtccctgatacatggaacgagcttctatatgccaacttcctcaaacgggagttgggttgtgcaaaattttccaaacaaactagttaaaatcaacggtgtggcaggtaaagagatgttatagctccaacatttcaaatgttacacctcatacgcttgcagtgtcatggactataagacgtgtaccttggaaagggaactccattttcaaattttcgtgagtggaatgtgccccttttcaagattaaatagtagggacaatttttgcagctttgtatagttgggattatttggaatctcttcaccaaaattactgtaatgtagtacattatgtgttgttgtatagctgaagagaacaacattaacctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="91516" stop="90274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91218" g_stop="90575" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90574" i_stop="90432" i_length="143">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90431" g_stop="90419" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="657" r_length="13" r_score="0.846"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E733256" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91218" e_stop="90575"/>
          <exon e_start="90431" e_stop="90419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAGACTGGAAGACTGGCGGCAACTGTCATCTTGAGAAGCTACCTAACATAGGATCATCCCAAGAGTCGGTGAAAACATCATTTGAATATAACACTGTGATCAATGTGCTGTCTGAGAAACAGAACAAATCAAAAACATGGAATTTGGATTTATTGAATGTAACAGGGATGACATTTCAGAGAAGAGACGGTCACTCATCTTTGTATTACTTAGGTCCCAAGGTTGGACCAGCTCCTCTCCACCGGCAAGACTGCAGCCACTGGTGCCTCCCCGGTGTCCCTGATACATGGAACGAGCTTCTATATGCCAACTTCCTCAAACGGGAGTTGGGTTGTGCAAAATTTTCCAAACAAACTAGTTAAAATCAACGGTGTGGCAGGTAAAGAGATGTTATAGCTCCAACATTTCAAATGTTACACCTCATACGCTTGCAGTGTCATGGACTATAAGACGTGTACCTTGGAAAGGGAACTCCATTTTCAAATTTTCGTGAGTGGAATGTGCCCCTTTTCAAGATTAAATAGTAGGGACAATTTTTGCAGCTTTGTATAGTTGGGATTATTTGGAATCTCTTCACCAAAATTACTGTAATGTAGTACATTATGTGTTGTTGTATAGCTGAAGAGAACAACATTAACCTAATTTTATACAAAATGACGAGCTTCCCCAATTGCAATATTGTACATTCCCTGTTTTTACGTTATGGACACAAACTGTTTTAACACTATAAATACAGAATGTCTTATTGTTATGTATTCGACGAGCGTTTTTTTCTTTTTTACAGAAAAACAAAACAA</genome_strand>
        <mrna_strand>CGGTAGACTGGAAGACTGGCGGCAACTGTCATCTTGAGAAGCTACCTAACATAGGATCATCCCAAGAGTCGGTGAAAACATCATTTGAATATAACACTGTGATCAATGTGCTGTCTGAGAAACAGAACAAATCAAAAACATGGAATTTGGATTTATTGAATGTAACAGGGATGACATTTCAGAGAAGAGACGGTCACTCATCTTTGTATTACTTAGGTCCCAAGGTTGGACCAGCTCCTCTCCACCGGCAAGACTGCAGCCACTGGTGCCTCCCCGGTGTCCCTGATACATGGAACGAGCTTCTATATGCCAACTTCCTCAAACGGGAGTTGGGTTGTGCAAAATTTTCCAAACAAACTAGTTAAAATCAACGGTGTGGCAGGTAAAGAGATGTTATAGCTCCAACATTTCAAATGTTACACCTCATACGCTTGCAGTGTCATGGACTATAAGACGTGTACCTTGGAAAGGGAACTCCATTTTCAAATTTTCGTGAGTGGAATGTGCCCCTTTTCAAGATTAAATAGTAGGGACAATTTTTGCAGCTTTGTATAGTTGGGATTATTTGGAATCTCTTCACCAAAATTACTGTAATGTAGTACATTATGTGTTGTTGTATAGCTGAAGAGAACAACATTAACCTA...............................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728184" ref_strand="+" ref_description="SGN-E728184 [LA16DH08]">
      <seq>ggatactggaagactggcggcaactgtcatcttgagaagctacctaacataggatcatcccaagagtcggtgaaaacatcatttgaatataacactgtgatcaatgtgctgtctgagaaacagaacaaatcaaaaacatggaatttggatttattgaatgtaacagggatgacatttcagagaagagacggtcactcatctttgtattacttaggtcccaaggttggaccagctcctctccaccggcaagactgcagccactggtgcctccccggtgtccctgatacatggaacgagcttctatatgccaacttcctcaaacgggagttgggttgtgcaaaattttccaaacaaactagttaaaatcaacggtgtggcaggtaaagagatgttatagctccaacatttcaaatgttacacctcatacgcttgcagtgtcatggactataagacgtgtaccttggaaagggaactccattttcaaattttcgtgagtggaatgtgccccttttcaagattaaatagtagggacaatttttgcagctttgtatagttgggattatttggaatctcttcaccaaaattactgtaatgtagtacattatgtgttgttgtatagctgaagagaacaacattaacctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="91516" stop="90274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91216" g_stop="90575" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90574" i_stop="90432" i_length="143">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90431" g_stop="90419" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="655" r_length="13" r_score="0.846"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E728184" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91216" e_stop="90575"/>
          <exon e_start="90431" e_stop="90419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGACTGGAAGACTGGCGGCAACTGTCATCTTGAGAAGCTACCTAACATAGGATCATCCCAAGAGTCGGTGAAAACATCATTTGAATATAACACTGTGATCAATGTGCTGTCTGAGAAACAGAACAAATCAAAAACATGGAATTTGGATTTATTGAATGTAACAGGGATGACATTTCAGAGAAGAGACGGTCACTCATCTTTGTATTACTTAGGTCCCAAGGTTGGACCAGCTCCTCTCCACCGGCAAGACTGCAGCCACTGGTGCCTCCCCGGTGTCCCTGATACATGGAACGAGCTTCTATATGCCAACTTCCTCAAACGGGAGTTGGGTTGTGCAAAATTTTCCAAACAAACTAGTTAAAATCAACGGTGTGGCAGGTAAAGAGATGTTATAGCTCCAACATTTCAAATGTTACACCTCATACGCTTGCAGTGTCATGGACTATAAGACGTGTACCTTGGAAAGGGAACTCCATTTTCAAATTTTCGTGAGTGGAATGTGCCCCTTTTCAAGATTAAATAGTAGGGACAATTTTTGCAGCTTTGTATAGTTGGGATTATTTGGAATCTCTTCACCAAAATTACTGTAATGTAGTACATTATGTGTTGTTGTATAGCTGAAGAGAACAACATTAACCTAATTTTATACAAAATGACGAGCTTCCCCAATTGCAATATTGTACATTCCCTGTTTTTACGTTATGGACACAAACTGTTTTAACACTATAAATACAGAATGTCTTATTGTTATGTATTCGACGAGCGTTTTTTTCTTTTTTACAGAAAAACAAAACAA</genome_strand>
        <mrna_strand>GGATACTGGAAGACTGGCGGCAACTGTCATCTTGAGAAGCTACCTAACATAGGATCATCCCAAGAGTCGGTGAAAACATCATTTGAATATAACACTGTGATCAATGTGCTGTCTGAGAAACAGAACAAATCAAAAACATGGAATTTGGATTTATTGAATGTAACAGGGATGACATTTCAGAGAAGAGACGGTCACTCATCTTTGTATTACTTAGGTCCCAAGGTTGGACCAGCTCCTCTCCACCGGCAAGACTGCAGCCACTGGTGCCTCCCCGGTGTCCCTGATACATGGAACGAGCTTCTATATGCCAACTTCCTCAAACGGGAGTTGGGTTGTGCAAAATTTTCCAAACAAACTAGTTAAAATCAACGGTGTGGCAGGTAAAGAGATGTTATAGCTCCAACATTTCAAATGTTACACCTCATACGCTTGCAGTGTCATGGACTATAAGACGTGTACCTTGGAAAGGGAACTCCATTTTCAAATTTTCGTGAGTGGAATGTGCCCCTTTTCAAGATTAAATAGTAGGGACAATTTTTGCAGCTTTGTATAGTTGGGATTATTTGGAATCTCTTCACCAAAATTACTGTAATGTAGTACATTATGTGTTGTTGTATAGCTGAAGAGAACAACATTAACCTA...............................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544894" ref_strand="+" ref_description="SGN-E544894 [TUS-67-H10]">
      <seq>gatcatcccaagagtcggtgaaaacatcatttgaatataacactgtgatcaatgtgctgtctgagaaacagaacaaatcaaaaacatggaatttggatttattgaatgtaacagggatgacatttcagagaagagacggtcactcatctttgtattacttaggtcccaaggttggaccagctcctctccaccggcaagactgcagccactggtgcctccccggtgtccctgatacatggaacgagcttctatatgccaacttcctcaaacgggagttgggttgtgcaaaattttccaaacaaactagttaaaatcaacggtgtggcaggtaaagagatgttatagctccaacatttcaaatgttacacctcatacgcttgcagtgtcatggactataagacgtgtaccttggaaagggaactccattttcaaattttcgtgagtggaatgtgccccttttcaagattaaatagtagggacaatttttgcagctttgtatagttgggattatttggaatctcttcaccaaaattactgtaatgtagtacattatgtgttgttgtatagctgaagagaacaacattaacctaattttatacaaaatgacgagctttcccaattgcaatattgtacattccctgtttttacgttatggacacaaactggtttaacactattaatacagaatgtcttatttgtatggattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="91464" stop="90159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91164" g_stop="90449" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E544894" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91164" e_stop="90449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCATCCCAAGAGTCGGTGAAAACATCATTTGAATATAACACTGTGATCAATGTGCTGTCTGAGAAACAGAACAAATCAAAAACATGGAATTTGGATTTATTGAATGTAACAGGGATGACATTTCAGAGAAGAGACGGTCACTCATCTTTGTATTACTTAGGTCCCAAGGTTGGACCAGCTCCTCTCCACCGGCAAGACTGCAGCCACTGGTGCCTCCCCGGTGTCCCTGATACATGGAACGAGCTTCTATATGCCAACTTCCTCAAACGGGAGTTGGGTTGTGCAAAATTTTCCAAACAAACTAGTTAAAATCAACGGTGTGGCAGGTAAAGAGATGTTATAGCTCCAACATTTCAAATGTTACACCTCATACGCTTGCAGTGTCATGGACTATAAGACGTGTACCTTGGAAAGGGAACTCCATTTTCAAATTTTCGTGAGTGGAATGTGCCCCTTTTCAAGATTAAATAGTAGGGACAATTTTTGCAGCTTTGTATAGTTGGGATTATTTGGAATCTCTTCACCAAAATTACTGTAATGTAGTACATTATGTGTTGTTGTATAGCTGAAGAGAACAACATTAACCTAATTTTATACAAAATGACGAGCTTCCCCAATTGCAATATTGTACATTCCCTGTTTTTACGTTATGGACACAAACTGTTTTAACACTATAAATACAGAATGTCTTATTGTTATGTATTCGACGAGCGT</genome_strand>
        <mrna_strand>GATCATCCCAAGAGTCGGTGAAAACATCATTTGAATATAACACTGTGATCAATGTGCTGTCTGAGAAACAGAACAAATCAAAAACATGGAATTTGGATTTATTGAATGTAACAGGGATGACATTTCAGAGAAGAGACGGTCACTCATCTTTGTATTACTTAGGTCCCAAGGTTGGACCAGCTCCTCTCCACCGGCAAGACTGCAGCCACTGGTGCCTCCCCGGTGTCCCTGATACATGGAACGAGCTTCTATATGCCAACTTCCTCAAACGGGAGTTGGGTTGTGCAAAATTTTCCAAACAAACTAGTTAAAATCAACGGTGTGGCAGGTAAAGAGATGTTATAGCTCCAACATTTCAAATGTTACACCTCATACGCTTGCAGTGTCATGGACTATAAGACGTGTACCTTGGAAAGGGAACTCCATTTTCAAATTTTCGTGAGTGGAATGTGCCCCTTTTCAAGATTAAATAGTAGGGACAATTTTTGCAGCTTTGTATAGTTGGGATTATTTGGAATCTCTTCACCAAAATTACTGTAATGTAGTACATTATGTGTTGTTGTATAGCTGAAGAGAACAACATTAACCTAATTTTATACAAAATGACGAGCTTTCCCAATTGCAATATTGTACATTCCCTGTTTTTACGTTATGGACACAAACTGGTTTAACACTATTAATACAGAATGTCTTATTTGTATGGATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544893" ref_strand="+" ref_description="SGN-E544893 [TUS-67-H10](-)">
      <seq>gatcatccccaagagtcggtgaaaacatcatttgaatataacactgtgatcaatgtgctgtctgagaaacagaacaaatcaaaaacatggaatttggatttattgaatgtaacagggatgacatttcagagaagagacggtcactcatctttgtattacttaggtcccaaggttggaccagctcctctccaccggcaagactgcagccactggtgcctccccggtgtccctgatacatggaacgagcttctatatgccaacttcctcaaacgggagttgggttgtgcaaaattttccaaacaaactagttaaaatcaacggtgtggcaggtaaagagatgttatagctccaacatttcaaatgttacacctcatacgcttgcagtgtcatggactataagacgtgtaccttggaaagggaactccattttcaaattttcgtgagtggaatgtgccccttttcaagattaaatagtagggacaatttttgcagctttgtatagttgggattatttggaatctcttcaccaaaattactgtaatgtagtacattatgtgttgttgtatagctgaagagaacaacattaacctaattttatacaaaatgacgagcttccccaattgcaatattgtacattccctgtttttacgttatggacacaaactgttttaacactataaatacagaatgtcttattgttatgtattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="91464" stop="90159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91164" g_stop="90449" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="717" r_length="717" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E544893" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91164" e_stop="90449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAT-CCCAAGAGTCGGTGAAAACATCATTTGAATATAACACTGTGATCAATGTGCTGTCTGAGAAACAGAACAAATCAAAAACATGGAATTTGGATTTATTGAATGTAACAGGGATGACATTTCAGAGAAGAGACGGTCACTCATCTTTGTATTACTTAGGTCCCAAGGTTGGACCAGCTCCTCTCCACCGGCAAGACTGCAGCCACTGGTGCCTCCCCGGTGTCCCTGATACATGGAACGAGCTTCTATATGCCAACTTCCTCAAACGGGAGTTGGGTTGTGCAAAATTTTCCAAACAAACTAGTTAAAATCAACGGTGTGGCAGGTAAAGAGATGTTATAGCTCCAACATTTCAAATGTTACACCTCATACGCTTGCAGTGTCATGGACTATAAGACGTGTACCTTGGAAAGGGAACTCCATTTTCAAATTTTCGTGAGTGGAATGTGCCCCTTTTCAAGATTAAATAGTAGGGACAATTTTTGCAGCTTTGTATAGTTGGGATTATTTGGAATCTCTTCACCAAAATTACTGTAATGTAGTACATTATGTGTTGTTGTATAGCTGAAGAGAACAACATTAACCTAATTTTATACAAAATGACGAGCTTCCCCAATTGCAATATTGTACATTCCCTGTTTTTACGTTATGGACACAAACTGTTTTAACACTATAAATACAGAATGTCTTATTGTTATGTATTCGACGAGCGT</genome_strand>
        <mrna_strand>GATCATCCCCAAGAGTCGGTGAAAACATCATTTGAATATAACACTGTGATCAATGTGCTGTCTGAGAAACAGAACAAATCAAAAACATGGAATTTGGATTTATTGAATGTAACAGGGATGACATTTCAGAGAAGAGACGGTCACTCATCTTTGTATTACTTAGGTCCCAAGGTTGGACCAGCTCCTCTCCACCGGCAAGACTGCAGCCACTGGTGCCTCCCCGGTGTCCCTGATACATGGAACGAGCTTCTATATGCCAACTTCCTCAAACGGGAGTTGGGTTGTGCAAAATTTTCCAAACAAACTAGTTAAAATCAACGGTGTGGCAGGTAAAGAGATGTTATAGCTCCAACATTTCAAATGTTACACCTCATACGCTTGCAGTGTCATGGACTATAAGACGTGTACCTTGGAAAGGGAACTCCATTTTCAAATTTTCGTGAGTGGAATGTGCCCCTTTTCAAGATTAAATAGTAGGGACAATTTTTGCAGCTTTGTATAGTTGGGATTATTTGGAATCTCTTCACCAAAATTACTGTAATGTAGTACATTATGTGTTGTTGTATAGCTGAAGAGAACAACATTAACCTAATTTTATACAAAATGACGAGCTTCCCCAATTGCAATATTGTACATTCCCTGTTTTTACGTTATGGACACAAACTGTTTTAACACTATAAATACAGAATGTCTTATTGTTATGTATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309281" ref_strand="+" ref_description="SGN-E309281 [cLEY-22-D15]">
      <seq>atcatcccaagagtcggtgaaaacatcatttgaatataacactgtgatcaatgtgctgtctgagaaacagaacaaatcaaaaacatggaatttggatttattgaatgtaacagggatgacatttcagagaagagacggtcactcatctttgtattacttaggtcccaaggttggaccagctcctctccaccggcaagactgcagccactggtgcctccccggtgtccctgatacatggaacgagcttctatatgccaacttcctcaaacgggagttgggttgtgcaaaattttccaaacaaactagttaaaatcaacggtgtggcaggtaaagagatgttatagctccaacatttcaaatgttacacctcatacgcttgcagtgtcatggactataagacgtgtaccttggaaagggaactccattttcaaattttcgtgagtggaatgtgccccttttcaagattaaatagtagggacaatttttgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="91463" stop="90374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91163" g_stop="90674" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E309281" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91163" e_stop="90674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCCCAAGAGTCGGTGAAAACATCATTTGAATATAACACTGTGATCAATGTGCTGTCTGAGAAACAGAACAAATCAAAAACATGGAATTTGGATTTATTGAATGTAACAGGGATGACATTTCAGAGAAGAGACGGTCACTCATCTTTGTATTACTTAGGTCCCAAGGTTGGACCAGCTCCTCTCCACCGGCAAGACTGCAGCCACTGGTGCCTCCCCGGTGTCCCTGATACATGGAACGAGCTTCTATATGCCAACTTCCTCAAACGGGAGTTGGGTTGTGCAAAATTTTCCAAACAAACTAGTTAAAATCAACGGTGTGGCAGGTAAAGAGATGTTATAGCTCCAACATTTCAAATGTTACACCTCATACGCTTGCAGTGTCATGGACTATAAGACGTGTACCTTGGAAAGGGAACTCCATTTTCAAATTTTCGTGAGTGGAATGTGCCCCTTTTCAAGATTAAATAGTAGGGACAATTTTTGCAG</genome_strand>
        <mrna_strand>ATCATCCCAAGAGTCGGTGAAAACATCATTTGAATATAACACTGTGATCAATGTGCTGTCTGAGAAACAGAACAAATCAAAAACATGGAATTTGGATTTATTGAATGTAACAGGGATGACATTTCAGAGAAGAGACGGTCACTCATCTTTGTATTACTTAGGTCCCAAGGTTGGACCAGCTCCTCTCCACCGGCAAGACTGCAGCCACTGGTGCCTCCCCGGTGTCCCTGATACATGGAACGAGCTTCTATATGCCAACTTCCTCAAACGGGAGTTGGGTTGTGCAAAATTTTCCAAACAAACTAGTTAAAATCAACGGTGTGGCAGGTAAAGAGATGTTATAGCTCCAACATTTCAAATGTTACACCTCATACGCTTGCAGTGTCATGGACTATAAGACGTGTACCTTGGAAAGGGAACTCCATTTTCAAATTTTCGTGAGTGGAATGTGCCCCTTTTCAAGATTAAATAGTAGGGACAATTTTTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576784" ref_strand="+" ref_description="SGN-E576784 [60056]">
      <seq>gagctccattcctagtgtttcaaggtcgtccaccttcaggggctccccgaaatgttaaattgactttgagactggatcaaatggattggagctctgctcaatggaaaggagcagatgttttggtattcaacagtggtcactggtggatttatgaaaaaactattagagagggatgttactttcaacaaggtggagaagtggatatgaccatgaatattgagactgcatacaggaggtcaatatcgacattggttgattggataggtcatgaagtaaatatgaccaagacacatgtcgtatttcgaacttatgctcctgttcactttagaggtggagactggaagaccggcggtaactgtcatcttgagaagctacctaacataggatcatcccaagagtcgctgaaaacatcatttgaatataacactgtgatcaatgtgctgtcggagaaacagaacaaatcaaaaacatggaatttggatttattgaatgtaacagggatgacatttcagagaagagacggtcactcatctttgtattacttaggtccaaaggttggaccagctcctctccaccgncaagactgcagccactggtgcctccccggtgtccctgatacatggaacgagcttctatatgccacttcctcaaacgtgagttgggttgtgcagaattttccaaacttacttgttaatctcccgtgtggcaggtaagagatcttataaccatgttggtcccaacattttaacatgttacacctcataacgactatggttgcagctcatggatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94259" stop="90550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93959" g_stop="93791" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93790" i_stop="92573" i_length="1218">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92572" g_stop="92414" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="328" r_length="159" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92413" i_stop="91221" i_length="1193">
            <donor d_prob="0.738" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91220" g_stop="90837" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="709" r_length="381" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E576784" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93959" e_stop="93791"/>
          <exon e_start="92572" e_stop="92414"/>
          <exon e_start="91220" e_stop="90837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTCCATTCCTAGTGTTTCAAGGTCGTCCACCTTCAGGGGCTCCCCGAAATGTTAAATTGACTTTGAGATTGGATCAGATGGATTGGAGCTCTGCTCAATGGAAAGGAGCAGATATTTTGGTATTCAACAGTGGTCACTGGTGGATTTATGAAAAAACTATTAGAGAGTAAGCTCTCTTTTCTTTCTTTTTCAAATTTCAAGCTCCCATACTTCTCTTGCTTGTTTACTGATAGAATGAATCTACTGGAACACTTCCTATTATACTTTTGTGTCAAGAACTCAAAGTCCTCACGAGTGACTACAATTCTACAAATAGATTATAGCTTGCTACTGTTAGTATCTTTTAATAATTATCAACACAGCGAAAAGTTGTATAAGATTATGAGTTACATATAGTTGCTATAGTTGTGTATATTTCCCTTCTAGATTTTTGCATTTCAAAAAGCTGTTTTAATTTAAAATCTGCAAAGATTGGTAAAACATAAAGAAAATAATTAACCACTAAATGTGTAGTACATAGAGAAAACTAGCATTTACAATTTGCAACATATTGTCAGAACCTTCAAAGTTGTTGAGCTACTTTATGGCAAAGATTTTTTATGGAAAAGAATAGTATGCCTTGGAAGACCAAATAACTGATAACCATTAACAAGCACCTCAACTTCCATGCACTTTACTTCCTTTCTTTTCCAGTTCTGCTCTCTTTGCACATTGTGAAAGGAAAAATGAACTAATGGGCGCGTAGAGAGGGCATAAACCTATGGGGTTTCCCCTCATTCATTGTCAGATATGCCCTGATGTTAAATTTGGCAGTGAAGCTAATTGATCTGAACTAGGTACCTTGAATAGTGGATATGTAAGCACAATAAGTTTGACAGGAAAGAGACTGAAATGGTTCGGTAATGAACTCAGTAACTTTGCAGAAAAATATAAGATTTTGAATTTTAACAGTTATCATGCTACGGAGAATTGAAGGTGGTAAATTCAAATATCCTTCTTTAAAATATGTTTGAGCTCTTACATTTAGCCTTTTTGTCTTAGTCTTTAGGTTGGCCTTCTATCTGAAATTGAAAGGGTTAAGTGAGGTATGAGTGATTAGTTGTTGTCGTTGGATTTCATGAACTAAACATTGCTACAAGTATTATGTACTTGTAGGAATTTTTATTTGGAGAAAAATAACTCGAATTGTTTCAGGTAAGTATTGTCCTCATCATGTGAATTTTGTTCCTCAAATTGTTTAGATGTGTTGCTTCCCGCCACCAAGTAGTGCATTAATATTAAGCACTTTAAGTTTAGACATTAATATTTGTTGCTTTTGTGAATCATAATCTTGATAACTGATAACATAATATACTTGTGACTTATTGATTTTTGTACTTGATAGGGGATGTTACTTTCAACTAGGTGGAGAAGTCGATATGACGATGAATATTGAGACTGCATACAGGAGGTCAATATCGACATTGGTTGATTGGATAGGTCATGAAGTGAATATGACCAAGACACATGTCGTATTTCGAACTTATGCTCCTGTTCACTTTAGGTATGTCTTGGTCTTGATCTGTTAACTGAAGGGAACGTTTCGTAAGGCAACATACTTCTATAAATTTTGTTGAGATCTGTTGCTGAATACATCATATTACAAGTGTGAGGAATAAATTTAGTCCAACATGGTAATTTCAGTTTAAAAAGAAGCTGAGAAGGTTGACCCCTTGAGTTTTTTTCTACTGGTTGAATCATGTTGTACAACAACAATAACATAACCTGTATAATGCCACAAATGGGGTCTGGGGAGGGTGGTGTGTACTCAAACCTCACCCCTGCCTTGCGAAGACATTGAGGCTAGATTGTGTTTGACTGTCCATAAACCTTTCTACCTTAATCCCTGACCTCTATACCCTCCCATCTAGGGTCATGCCCTCAGTAAGTTGCAGGAGTGTCATGTCGTGTCCGGACACCTCCCAGTGCTTCTTTGGCCTACCTCTACCTTCCCTTAGACCCCACATATCCAACCTTCCGCACCTTCTCACTGGGATATGGGGGCATCTTTTTTTCACATGCTCAAACCATCTCAGCGCAGCCTCGCTTCTCTCATTTTGTCCACCATGGATGCCACTCCTACCTTGTCTCTAATATCTTTTTTTTTTTTGACGACGACCTTGTCTCTAATATCTTTGTTCCTAAAAGTATCTCTCCTAGTATGCCCTCACATCCATTTCACTCTCCGGATTGTCGTTCTGCTACTGATTTGTTGGATGTAAGAGTTCTTGACCTGCCAATACTTCACCCTATACAACATAGTTGGTCTAACCACCACATTTTATAACTTACAAACTGTACAGTTTATATACGCAAGTATGGGTTTACTTCTACCCGAAATTGTATGTTCCCTTGGCTTTTACGAACTGTTTTAACGAAAATAATAGGTGAAATGTTCTGCACCCTAATTTGTCATTACTCACGGCCTCCTCTTCCCCAGCTCGTCTCTAAACATGCATATTCTGTGGCATTGATTATGTTCAAATTTCTAATTTCCAACATGGACATACTGCCTGTTACTACGTTAGTTTTAATAATCAGGTGGCAAGTCCATGTTTGCATCTTTCAATTCATGAGCTAGCTTTCATTGGTTGAATGGATTTAGTAGGTTGGTGTTATTTGTAGATTGTTTTTGATGATAATATACACATCTTTGTTAATAAACCAACTAATGAATCACTTCAATATAATGTATAGAGGTGGAGACTGGAAGACTGGCGGCAACTGTCATCTTGAGAAGCTACCTAACATAGGATCATCCCAAGAGTCGGTGAAAACATCATTTGAATATAACACTGTGATCAATGTGCTGTCTGAGAAACAGAACAAATCAAAAACATGGAATTTGGATTTATTGAATGTAACAGGGATGACATTTCAGAGAAGAGACGGTCACTCATCTTTGTATTACTTAGGTCCCAAGGTTGGACCAGCTCCTCTCCACCGGCAAGACTGCAGCCACTGGTGCCTCCCCGGTGTCCCTGATACATGGAACGAGCTTCTATATGCCAACTTCCTCAAACGGGAGTTGGGTTGTGCAAAATTTTCCAAACAAACTAGTTAAAATCAACGGTGTGGCAG</genome_strand>
        <mrna_strand>GAGCTCCATTCCTAGTGTTTCAAGGTCGTCCACCTTCAGGGGCTCCCCGAAATGTTAAATTGACTTTGAGACTGGATCAAATGGATTGGAGCTCTGCTCAATGGAAAGGAGCAGATGTTTTGGTATTCAACAGTGGTCACTGGTGGATTTATGAAAAAACTATTAGAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATGTTACTTTCAACAAGGTGGAGAAGTGGATATGACCATGAATATTGAGACTGCATACAGGAGGTCAATATCGACATTGGTTGATTGGATAGGTCATGAAGTAAATATGACCAAGACACATGTCGTATTTCGAACTTATGCTCCTGTTCACTTTAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGGAGACTGGAAGACCGGCGGTAACTGTCATCTTGAGAAGCTACCTAACATAGGATCATCCCAAGAGTCGCTGAAAACATCATTTGAATATAACACTGTGATCAATGTGCTGTCGGAGAAACAGAACAAATCAAAAACATGGAATTTGGATTTATTGAATGTAACAGGGATGACATTTCAGAGAAGAGACGGTCACTCATCTTTGTATTACTTAGGTCCAAAGGTTGGACCAGCTCCTCTCCACCGNCAAGACTGCAGCCACTGGTGCCTCCCCGGTGTCCCTGATACATGGAACGAGCTTCTATATGCC-ACTTCCTCAAACGTGAGTTGGGTTGTGCAGAATTTTCCAAACTTACTTGTT--AATCTCCCGTGTGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561385" ref_strand="+" ref_description="SGN-E561385 [17368]">
      <seq>aagcagagatgagtgaaaaccatctcccagattcttccacttgaatattttcaagaaactcaangggtttaagccttttgagccttcaccaggtgttcttggctgcttctttttcactgtttgcttattcttatgtctcttcttgttggattatagaacagtaaacaaagtgcctcggttgcatcagccatccttgtttgctacttggattgggataaatggatcatctttgtcctataacaagagtgaaaaggtttattttttgggaaaaggtgcagaaagttgtgatattttcgatggaaattgggtttgggatgaaagttatccactttatgaatcaaaggattgtaatttcttggatgaaggctttcgttgttctgagaatggcaggcctgacaatttctatactaaatggcgttggcaacctaaagattgcaacttgcccagattcgatgcaaaaactatgttagagaagttgcgaaacagacgcgttgtgtttgttggggattcaattggaagaaaccagtgggagtctctactctgcatgttatcttctgcagttcctgataaaagcaagatatatgaagttaatggaaatcccatcacaaagcacatgggtttcttgatttttaacgttcaaggagttcaactgcactattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95386" stop="93669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95086" g_stop="94645" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94644" i_stop="94181" i_length="464">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94180" g_stop="93969" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="660" r_length="213" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E561385" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95086" e_stop="94645"/>
          <exon e_start="94180" e_stop="93969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAGAGATGAGTGAAAACCCACCTCCCAGATTCTTCAACACAATGACCCATTTGAAGATTTTCAAGAAACTCAAGCCTTTTGAGCCTTCACCAGGTGTTCTTGGCTGCTTCTTTTTCACCGTTTGCTTATTCTTGTATCTCTTCTTGTTGGATTATACAACAGTAAACAAAGTGCCTCGGTTGCATCAGCCATCCTTGTTAGCTACTTGGGTTGGGATAAATGGATCATCTTTGTCCTATAAC---------AAGGTTGATTTTTTGGGAAGAGGTGCAGAAAGTTGTGATATTTTCGATGGAAATTGGGTTTGGGATGAAAGATATCCACTTTATGAATCAAAGGATTGTAATTTCTTGGATGAAGGCTTTCGTTGTTCTGAGAATGGTAGGCCTGACAATTTCTATACTAAATGGCGTTGGCAACCTAAAGATTGCAACTTGCCCAGGTTAATTTCACTTGTATTCTACTGGTAGTGACTACTGTGTTTAATTTCTGCTGATAATTTAACGAAAGAGTTTACGAGACAATAAAGTGAAAGGATTGCTTTAACAGTTAAGGCTTTAATATGATGTGCTTTTCTTGCATACCATTTTCTACTGAATTTAGCTGATTAAGGTTTTAATCATTGAACTACTAGGTGAACACTGACAGTGCACAATATTGTTGAACAATTTGAGGGGTTACATCAGGTTCTCGTCCAATTTTATCTAATAGTGTGCTAAACATATAGAACTTAACTCTTACTACATGGGCTCTCATTGAGCATTGTCTAAAGTTGTTAGCTTGATGCTTAAGTCTTTCTTGGTTATTCTTGAGAAGACTTTGTGCTTAGTAGGAGAGAGCTTTTCATAATCTTTTCCATGATTATTGAATGCAAATTTTTAGTCTGCTAATTACTCTTTTAAGCAGATTCGATGCAAAATCTATGTTAGAAAAGTTGCGAAACAGACGGGTTGTGTTTGTCGGAGATTCAATTGGAAGAAACCAGTGGGAGTCTCTACTCTGCATGTTATCTTCTGCTGTTCCTGACAAAAGCAAGATATATGAAGTTAATGGAAATCCTATCACGAAGCACATGGGTTTTTTGATTTTT-ATGTTCAAGGATTTCAACTGCACTATTG</genome_strand>
        <mrna_strand>AAGCAGAGATGAGTGAAAA-CCATCTCCCAGATTCTTC--CAC-TTGAATATTTTCAAGAAACTCAANGGGTTTAAGCCTTTTGAGCCTTCACCAGGTGTTCTTGGCTGCTTCTTTTTCACTGTTTGCTTATTCTTATGTCTCTTCTTGTTGGATTATAGAACAGTAAACAAAGTGCCTCGGTTGCATCAGCCATCCTTGTTTGCTACTTGGATTGGGATAAATGGATCATCTTTGTCCTATAACAAGAGTGAAAAGGTTTATTTTTTGGGAAAAGGTGCAGAAAGTTGTGATATTTTCGATGGAAATTGGGTTTGGGATGAAAGTTATCCACTTTATGAATCAAAGGATTGTAATTTCTTGGATGAAGGCTTTCGTTGTTCTGAGAATGGCAGGCCTGACAATTTCTATACTAAATGGCGTTGGCAACCTAAAGATTGCAACTTGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGATGCAAAAACTATGTTAGAGAAGTTGCGAAACAGACGCGTTGTGTTTGTTGGGGATTCAATTGGAAGAAACCAGTGGGAGTCTCTACTCTGCATGTTATCTTCTGCAGTTCCTGATAAAAGCAAGATATATGAAGTTAATGGAAATCCCATCACAAAGCACATGGGTTTCTTGATTTTTAACGTTCAAGGAGTTCAACTGCACTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366935" ref_strand="+" ref_description="SGN-E366935 [cLPT-6-O13]">
      <seq>aaaatattcaatttttttgatagtctccatcccaagactgcatttttctctacacccactactacttctttagtctaaagcagagatgagtgaaaacccacctcccagattcttcaacacaatgacccatttgaagattttcaagaaactcaagccttttgagccttcaccaggtgttcttggctgcttctttttcaccgtttgcttattcttgtgtctcttcttgttggattatacaacagtaaacaaagtgcctcggttgcatcagccatccttgtttgctacttggattgggataaatggatcatctttgtcctataacaaggttgattttttgggaagaggtgcagaaagttgtgatattttcgatggaaattgggtttgggatgaaagttatccactttatgaatcaaaggattgtaatttcttggatgaaggctttcgttgctctgagaatggtaggcctgacaatttctatactaaatggcgttggcaacctaaagattgcaacttgcccagattcgatgcaaaatctatgttagaaaagttgcggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95452" stop="93844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95167" g_stop="94645" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94644" i_stop="94181" i_length="464">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94180" g_stop="94144" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="556" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E366935" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95167" e_stop="94645"/>
          <exon e_start="94180" e_stop="94144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATATTCAATTTTTTTTTTTGATAGTCTCCATCCCAAGACTGCATTTTTCTCTACACCCACTACTACTTCTTTAGTCTAAAGCAGAGATGAGTGAAAACCCACCTCCCAGATTCTTCAACACAATGACCCATTTGAAGATTTTCAAGAAACTCAAGCCTTTTGAGCCTTCACCAGGTGTTCTTGGCTGCTTCTTTTTCACCGTTTGCTTATTCTTGTATCTCTTCTTGTTGGATTATACAACAGTAAACAAAGTGCCTCGGTTGCATCAGCCATCCTTGTTAGCTACTTGGGTTGGGATAAATGGATCATCTTTGTCCTATAACAAGGTTGATTTTTTGGGAAGAGGTGCAGAAAGTTGTGATATTTTCGATGGAAATTGGGTTTGGGATGAAAGATATCCACTTTATGAATCAAAGGATTGTAATTTCTTGGATGAAGGCTTTCGTTGTTCTGAGAATGGTAGGCCTGACAATTTCTATACTAAATGGCGTTGGCAACCTAAAGATTGCAACTTGCCCAGGTTAATTTCACTTGTATTCTACTGGTAGTGACTACTGTGTTTAATTTCTGCTGATAATTTAACGAAAGAGTTTACGAGACAATAAAGTGAAAGGATTGCTTTAACAGTTAAGGCTTTAATATGATGTGCTTTTCTTGCATACCATTTTCTACTGAATTTAGCTGATTAAGGTTTTAATCATTGAACTACTAGGTGAACACTGACAGTGCACAATATTGTTGAACAATTTGAGGGGTTACATCAGGTTCTCGTCCAATTTTATCTAATAGTGTGCTAAACATATAGAACTTAACTCTTACTACATGGGCTCTCATTGAGCATTGTCTAAAGTTGTTAGCTTGATGCTTAAGTCTTTCTTGGTTATTCTTGAGAAGACTTTGTGCTTAGTAGGAGAGAGCTTTTCATAATCTTTTCCATGATTATTGAATGCAAATTTTTAGTCTGCTAATTACTCTTTTAAGCAGATTCGATGCAAAATCTATGTTAGAAAAGTTGCGAAAC</genome_strand>
        <mrna_strand>AAAATATTCAA--T--TTTTTTGATAGTCTCCATCCCAAGACTGCATTTTTCTCTACACCCACTACTACTTCTTTAGTCTAAAGCAGAGATGAGTGAAAACCCACCTCCCAGATTCTTCAACACAATGACCCATTTGAAGATTTTCAAGAAACTCAAGCCTTTTGAGCCTTCACCAGGTGTTCTTGGCTGCTTCTTTTTCACCGTTTGCTTATTCTTGTGTCTCTTCTTGTTGGATTATACAACAGTAAACAAAGTGCCTCGGTTGCATCAGCCATCCTTGTTTGCTACTTGGATTGGGATAAATGGATCATCTTTGTCCTATAACAAGGTTGATTTTTTGGGAAGAGGTGCAGAAAGTTGTGATATTTTCGATGGAAATTGGGTTTGGGATGAAAGTTATCCACTTTATGAATCAAAGGATTGTAATTTCTTGGATGAAGGCTTTCGTTGCTCTGAGAATGGTAGGCCTGACAATTTCTATACTAAATGGCGTTGGCAACCTAAAGATTGCAACTTGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGATGCAAAATCTATGTTAGAAAAGTTGCGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739208" ref_strand="+" ref_description="SGN-E739208 [LC16CB09]">
      <seq>cccttttcataatctcaccatgatttgtgggcttcataaatcacatcacaacactaattaatctttgttgtcacttctccaacactcaaccacaaatctctagtcttaatgacaaaagagtgatttcatttatttgtaagtaaatattttactacttgtatgtccaaatccgaaatttcaattatcataacaaaaaaggaatactgaatagttgagaaaaaaaaatgctactactgctattcagataaaattgaaattcaatcaaatctacggggcttagttaataggtgcaaatcgcgatgcgtagctctctttcaactacattaaactcattgggagtggtctcccaatagtaaatcttttttgggggtgaatttattaatcaattctcatttccatactttctaaccaactaattaacaaccatttaatttaacatttgtgaatttagagagaaaatgaagtgaaatttgttgacatcccacgttgagcccacgttcccatagattctctcttaagcctcacggcggtttcaccgtccttgtacccttttccgacatctccgccacaaatcttttggtatttccctctgttgtcggtttcttcaaaaactcacttcttcttcttcttcaatattaagtactactcctggtccctatttgccattttagactactacttgtttgtctttaactttgtccatacaagaccccacctcatcatcatcaacaacatcttcctctaatcatttactctctttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96296" stop="94937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95999" g_stop="95237" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E739208" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95999" e_stop="95237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTCTCATAATCTCACCATGATTTGTGGGCTTCATAAATCACATCACAACACTAATTAATCTTTGTTGTCACTTCTCCAACACTCAACCACAAATCTCTAGTCTTAATGACAAAAGAGTGATTTCATTTATTTGTAAGTAAATATTTTACTACTTGTATGTCCAAATCCGAAATTTCAATTATCATAACAAAAAAGGAATACTGAATAGTTGAGAAAAAAAAATGCTACTACTGCTATTCAGATAAAATTGAAATTCAATCAAATCTACGGGGCTTAGTTAATAGGTGCAAATCGCGATGCGTAGCTCTCTTTCAACTACATTAAACTCATTGGGAGTGGTCTCCCAATAGTAAATCTTTTTTGGGGGTGAATTTATTAATCAATTCTCATTTCCATACTTTCTAACCAACTAATTAACAACCATTTAATTTAACATTTGTGAATTTAGAGAGAAAATGAAGTGAAATTTGTTGACATCCCACGTTGAGCCCACGTTCCCATAGATTCTCTCTTAAGCCTCACGGCGGTTTCACCGTCCTTGTACCCTTTTCCGACATCTCCGCCACAAATCTTTTGGTATTTCCCTCTGTTGTCGGTTTCTTCAAAAACTCACTTCTTCTTCTTCTTCAATATTAATTACTACTCCTGGTCCCTATTTGCCATTTTAGACTACTACTTGTTTGTCTTTAACTTTGTCCATACAAGACCCCACCTCATCATCATCAACAACATCTTCCTCTACTCATTTACTCTCTTTCTC</genome_strand>
        <mrna_strand>CCCTTTTCATAATCTCACCATGATTTGTGGGCTTCATAAATCACATCACAACACTAATTAATCTTTGTTGTCACTTCTCCAACACTCAACCACAAATCTCTAGTCTTAATGACAAAAGAGTGATTTCATTTATTTGTAAGTAAATATTTTACTACTTGTATGTCCAAATCCGAAATTTCAATTATCATAACAAAAAAGGAATACTGAATAGTTGAGAAAAAAAAATGCTACTACTGCTATTCAGATAAAATTGAAATTCAATCAAATCTACGGGGCTTAGTTAATAGGTGCAAATCGCGATGCGTAGCTCTCTTTCAACTACATTAAACTCATTGGGAGTGGTCTCCCAATAGTAAATCTTTTTTGGGGGTGAATTTATTAATCAATTCTCATTTCCATACTTTCTAACCAACTAATTAACAACCATTTAATTTAACATTTGTGAATTTAGAGAGAAAATGAAGTGAAATTTGTTGACATCCCACGTTGAGCCCACGTTCCCATAGATTCTCTCTTAAGCCTCACGGCGGTTTCACCGTCCTTGTACCCTTTTCCGACATCTCCGCCACAAATCTTTTGGTATTTCCCTCTGTTGTCGGTTTCTTCAAAAACTCACTTCTTCTTCTTCTTCAATATTAAGTACTACTCCTGGTCCCTATTTGCCATTTTAGACTACTACTTGTTTGTCTTTAACTTTGTCCATACAAGACCCCACCTCATCATCATCAACAACATCTTCCTCTAATCATTTACTCTCTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349747" ref_strand="+" ref_description="SGN-E349747 [cTOS-3-O9]">
      <seq>agggtgcttgtggtctctttcaatggcgaagaataactcgttgaagtcgaccgcagtggtattcggagccctagcatttgggtggctggcgattgagcttgctttcaaaccatggcttgataaagcccgagcttccatggacaagtctgacccatctcgcgaccccgacgatcaaagttgcaagtctcaggtcgatgttgatccgaacaactgatttgatttttgggttctaaaccccaaaatccaatatatgtgcttgaattttacttcataataaataattatgacttgttaatttctgtttttcttcagtttctagccgtccctgtattttattttgttggttaaagtgaaaggaaattggtagaagtttaatacaattcaagaggtaagttcaagataattgttccgtttttatatttctgtttcaagggtccatttgtatttgtattttatactcaaaatggagattttgacattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96964" stop="95883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96664" g_stop="96183" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E349747" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96664" e_stop="96183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTGCTTGTGGTCTCTTTCAATGGCGAAGAATAACTCGTTGAAGTCGACCGCAGTGGTATTCGGAGCCCTAGCATTTGGGTGGCTGGCGATTGAGCTTGCTTTCAAACCATGGCTTGATAAAGCCCGAGCTTCCATGGACAAGTCTGACCCATCTCGCGACCCCGACGATCAAAGTTGCAAGTCTCAGGTCGATGTTGATCCGAACAACTGATTTGATTTTTGGGTTCTAAACCCCAAAATCCAATATATGTGCTTGAATTTTACTTCATAATAAATAATTATGACTTGTTAATTTCTGTTTTTCTTCAGTTTCTAGCCGTCCCTGTATTTTATTTTGTTGGTTAAAGTGAAAGGAAATTGGTAGAAGTTTAATACAATTCAAGAGGTAAGTTCAAGATAATTGTTCCGTTTTTATATTTCTGTTTCAAGGGTCCATTTGTATTTGTATTTTATACTCAAAATGGAGATTTTGACATTTA</genome_strand>
        <mrna_strand>AGGGTGCTTGTGGTCTCTTTCAATGGCGAAGAATAACTCGTTGAAGTCGACCGCAGTGGTATTCGGAGCCCTAGCATTTGGGTGGCTGGCGATTGAGCTTGCTTTCAAACCATGGCTTGATAAAGCCCGAGCTTCCATGGACAAGTCTGACCCATCTCGCGACCCCGACGATCAAAGTTGCAAGTCTCAGGTCGATGTTGATCCGAACAACTGATTTGATTTTTGGGTTCTAAACCCCAAAATCCAATATATGTGCTTGAATTTTACTTCATAATAAATAATTATGACTTGTTAATTTCTGTTTTTCTTCAGTTTCTAGCCGTCCCTGTATTTTATTTTGTTGGTTAAAGTGAAAGGAAATTGGTAGAAGTTTAATACAATTCAAGAGGTAAGTTCAAGATAATTGTTCCGTTTTTATATTTCTGTTTCAAGGGTCCATTTGTATTTGTATTTTATACTCAAAATGGAGATTTTGACATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539989" ref_strand="-" ref_description="SGN-E539989 [TUS-60-A13]">
      <seq>caaaattgagctttgcatctgcagctaccagcttgttgtcaggttcgatctgcgcttcgacttaagccctagcgtctcttcaatttcttcagcaacaatgaagctcgttagatttttgatgaagctgaacaacgagactgtctcaattgagctcaaaaacggcaccgttgttcatggaaccattacaggtgtggatgttagcatgaacacacatctgaaggctgtcaaaattacgctaaaagggaagaatccagtgacgctggatcacctgagtgtgaggggtaacaacatccgttattacatcctccctgacagcttaaatcttgagacactgctggtggaagaaacacctagggtgaagccaaagaagccaacagctggaaagcctatgggacgtggtcgtgggcgcggtcgtgggcgtggacgtggtcgaggccgctaaatgcattccagctgctcttaatttttgcagtgttgcctatgtaaacatgtgtacggatggagagatttgctcttagtttttcccagtagaaaaaagatggatctcatgcacaatttattttggatctttgaagtcaggagcatgttatctcgttgcatcatattgtctgctaacgttacttttgtatcgtgtacaattatgttcttccttgtcaagttactcaactaaattggtcacttcagcatctatactctgagtaaagtgacatagaattatatttggaccaaattgggaattgagataaataaatattaagtttgatgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100248" stop="96712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99940" g_stop="99867" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="111" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99866" i_stop="99786" i_length="81">
            <donor d_prob="0.346" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99785" g_stop="99709" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="188" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99708" i_stop="97711" i_length="1998">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97710" g_stop="97519" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="380" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97518" i_stop="97398" i_length="121">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97397" g_stop="97013" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="765" r_length="385" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="766" polyA_stop="779"/>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E539989" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539989" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="99940" e_stop="99867"/>
          <exon e_start="99785" e_stop="99709"/>
          <exon e_start="97710" e_stop="97519"/>
          <exon e_start="97397" e_stop="97013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTGTTCGATCTGCGCTTCGACTTAAGCCCTAGCGTCTCTTCAATTTCTTCAGCAACAATGAAGCTCGTTAGGTTCATGCGATATCTTCATCTTTTGAGTTTCTTTTCCAGTGTGCTTAGCAATGGATTTAACTTTTACCTTTTTTTGTGCAGATTTTTGATGAAGCTGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGCACCGTTGTTCATGGAACCATTACAGGTCACCCTCCCTATCTTTCTGTCTATTTCTTTGTTATCTATATTTAGGTATTTCCCTGTCAAGTCTAAAATGAACAATCTGAACGTATGTAATTGCTGAATTGCTCGCTCCAATAGGTAAATTAAGAATGTGCTTGTATAAAATTCATTTCCTGGGTTCACAAGTTTTTTGGTAGTGTCGCTAACTGAAAGTCTAGTTGCTGGGTGGTATATGGAAGTTGCTGAACTACAACAATAACATACTACCCAGTGTAATTCCACAAGTGGTGAGGTCTTGGGAGACAGAGTGTTTGCAAGCCTTACCCCTACCTCGTAGTGTTAAAGAGGCTGTTTCCAATAGATTCTCATGTTTAAATAAACCATTTCCAAACCATTTTTTAAATAAAGGATATATAAAAATAAGTGCTCATGACAGACAAGTGAGGTTTTGCTCAAGTAGTTGAGCACTTCCACCATCAACTAGTAGGTTGAGGGTTTGGGTCAGAGGATAGATGGGAACACTATTGATCCTTCTAGTCTCATGGGGGTGGGGTGGAAAAATGGAGCAACAACAACAACGAAAGCAAGTTGCTAAACTGTCTTTGGTTTATGCCACAAGTTAAGTTAGTTCATAGCGAATGTTAACTGCAATAGTTTACTTCACTCTCCTTCACTTCCACTGTGAGTAATTATGTATGTCCATAAATGCATGGAGCTAGGACTGAGAGGCTATAGAAAGTATACGAGGTAACTCGTCTCAATCTGTCTACTCCTCTCACTACCCTTCTGAATATGTCATCTTCTTATCCTCTCTGATTCACACGTATTATCTCTACTTCTGTCCTCCTTCAACTATGAAGTTCCTTTCAAATACCAACTGGAATTCATTCTCAAGTGCAGAGCTATTTCTGCCTATCATCACTGTAATTTATGTCTACACTCTAGAGCACCGTAGTTCCTCTCAGTTAATGCGTTAATTATACTCTGCCAATAAGAATAACATCTCTCATTCACTTTTTGTGGCTATAAAAATTGGATTATTACACAACTGAAGAATTTTGAAGTGTCACTATAATAATTCAACAATTCCTTCAATGAATTTGTATGCATTTAAATACAACTATGATGTCTCAATCCCAAACTAGTTGGTATGTCTATATTAGTGTCCTATATTTGTTCTGCTTTATTTGGACCATTTCATTAATTCACAGTTCGTTTACTTAAAATACAAATCTCTATATTGAAAAACAAAACAAACAAAAAAAAAAGAAATTATGGGAGTGAACATGGGATTCTTATCATCTTTTTGTCATTTTCTTAATATTTTTCATAAGTTAACTCCATAGATATATTCTTTGCCTTAAAACTTAAACTATGTTTGACTTTGGTGGAAGTGGCGGCGTTTGCGAATGGCTATGTTTAGCGTGGGGGGTGGAAGTGATAGTGTTTGCGAATGAGTGTGTTTAGCATGGGGGTTGAAGGGTAAGTCAGGGGTAAATTAGTAATTTGAATTTTAAGTTGGGAGTTGATGCTTTAAAGTAATATAGATAGATATAGACAACTACTTTATCATCTGCAAGAAAATCATACAGTAGCTTCTTTGTCTGGCAGTAGAGATGCCTTAGCAAACTTAGATAGGCTTCTTATGGCAAGTTGCATCGAAAATATCAAATTTTGCAAGGAAAATAGCCATATATGTATTGCAGAGTTTATCTCTGTTCTAGATAACTGTAGTAGTCAAAAGTAAAAATTTGTCCTGTTCTCATATTTTGAGACCTATAGCATTTCTCTTTTTCTGTTGGTTGTCCTTTCCATGCTTTTGACTGTTATTCCTTGAGGGGTTGCTTATACTTGCAGAAAATTGGTAGATATATTCGGGATATAGAAATATGTATTTGAGCATATCAGTATGTGTTTTGATATTAACTAGGCACAGCGGCTATTAAATCTGTCTCCTTATTGAAGTTGCTAGATTGAGAGCTGTGAGTTATAGCTTCTAAAGGCAGTTACATTTTTACAGGTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGGAAGAATCCAGTGACGCTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACACTGCTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTGGTATTGTCATATTGTTAAGGACTATGTTGGGATTTTTTTGTGCCTTGTGGGTGTATGGCTAAATTTCCTTATTGCTTGGACATCCTTCTTATATACTCTTCCTTTGATTGTTCCTCTTCAGGAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGCTGCTCTTAATTTTTGCAGTGTTGCCTATGTAAACATGTGTACGGATGGAGAGATTTGCTCTTAGTTTTTCCCAGTAGAAAAAAGATGGATCTCATGCACAATTTATTTTGGATCTTTGAAGTCAGGAGCATGTTATCTCGTTGCATCATATTGTCTGCTAACGTTACTTTTGTATCGTGTACAATTATGTTCTTCCTTGTCAAGTTACTCAACTAAATTGGTCACTTCAGCATCTATACTCTGAGTAAAGTGACATAGAATTATATTTGGACCAAATTGGGAATTGAGATAAATAAATATTAAGTTTGATG</genome_strand>
        <mrna_strand>GTCAGGTTCGATCTGCGCTTCGACTTAAGCCCTAGCGTCTCTTCAATTTCTTCAGCAACAATGAAGCTCGTTAG.................................................................................ATTTTTGATGAAGCTGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGCACCGTTGTTCATGGAACCATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGGAAGAATCCAGTGACGCTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACACTGCTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTG.........................................................................................................................GAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGCTGCTCTTAATTTTTGCAGTGTTGCCTATGTAAACATGTGTACGGATGGAGAGATTTGCTCTTAGTTTTTCCCAGTAGAAAAAAGATGGATCTCATGCACAATTTATTTTGGATCTTTGAAGTCAGGAGCATGTTATCTCGTTGCATCATATTGTCTGCTAACGTTACTTTTGTATCGTGTACAATTATGTTCTTCCTTGTCAAGTTACTCAACTAAATTGGTCACTTCAGCATCTATACTCTGAGTAAAGTGACATAGAATTATATTTGGACCAAATTGGGAATTGAGATAAATAAATATTAAGTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735201" ref_strand="+" ref_description="SGN-E735201 [LB14CG12]">
      <seq>atccagtgacgctggatcacctgagtgtgaggggtaacaacatccgttattacatcctccctgacagcttaaatcttgagacactgctggtggaagaaacacctagggtgaagccaaagaagccaacagctggaaagcctatgggacgtggtcgtgggcgcggtcgtgggcgtggacgtggtcgaggccgctaaatgcattccagctgctcttaatttttgcagtgttgcctatgtaaacatgtgtacggatggagagatttgctcttagtttttcccagtagaaaaaagatggatctcatgcacaatttattttggatctttgaagtcaggagcatgttatctcgttgcatcatattgtctgctaacgttacttttgtatcgtgtacaattatgttcttccttgtcaagttactcaactaaattggtcacttcagcatctatactctgagtaaagtgacatagaattatatttggaccaaattgggaattgagataaataaatattaagtttgatgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="97950" stop="96712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97650" g_stop="97519" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97518" i_stop="97398" i_length="121">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97397" g_stop="97013" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="517" r_length="385" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="518" polyA_stop="531"/>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E735201" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97650" e_stop="97519"/>
          <exon e_start="97397" e_stop="97013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAGTGACGCTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACACTGCTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTGGTATTGTCATATTGTTAAGGACTATGTTGGGATTTTTTTGTGCCTTGTGGGTGTATGGCTAAATTTCCTTATTGCTTGGACATCCTTCTTATATACTCTTCCTTTGATTGTTCCTCTTCAGGAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGCTGCTCTTAATTTTTGCAGTGTTGCCTATGTAAACATGTGTACGGATGGAGAGATTTGCTCTTAGTTTTTCCCAGTAGAAAAAAGATGGATCTCATGCACAATTTATTTTGGATCTTTGAAGTCAGGAGCATGTTATCTCGTTGCATCATATTGTCTGCTAACGTTACTTTTGTATCGTGTACAATTATGTTCTTCCTTGTCAAGTTACTCAACTAAATTGGTCACTTCAGCATCTATACTCTGAGTAAAGTGACATAGAATTATATTTGGACCAAATTGGGAATTGAGATAAATAAATATTAAGTTTGATG</genome_strand>
        <mrna_strand>ATCCAGTGACGCTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACACTGCTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTG.........................................................................................................................GAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGCTGCTCTTAATTTTTGCAGTGTTGCCTATGTAAACATGTGTACGGATGGAGAGATTTGCTCTTAGTTTTTCCCAGTAGAAAAAAGATGGATCTCATGCACAATTTATTTTGGATCTTTGAAGTCAGGAGCATGTTATCTCGTTGCATCATATTGTCTGCTAACGTTACTTTTGTATCGTGTACAATTATGTTCTTCCTTGTCAAGTTACTCAACTAAATTGGTCACTTCAGCATCTATACTCTGAGTAAAGTGACATAGAATTATATTTGGACCAAATTGGGAATTGAGATAAATAAATATTAAGTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288598" ref_strand="-" ref_description="SGN-E288598 [cLES-8-J18]">
      <seq>gctggaaagcctatggcacgtggtcgtgggcgcggtcgtgggcgtggacgtggtcgaggccgctaaatgcattccagctgctcttaatttttgcagtgttgcctatgtaaacatgtgtacggatggagagatttgctcttagtttttcccagtagaaaaaagatggatctcatgcacaatttattttggatctttgaagtcaggagcatgttatctcgttgcatcatattgtctgctaacgttacttttgtatcgtgtacaattatgttcttccttgtcaagttactcaactaaattggtcacttcagcatctatactctgagtaaagtgacatagaattatatttggaccaaattgggaattgagataaataaatattaagtttgatgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="97700" stop="96712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97522" g_stop="97519" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97518" i_stop="97398" i_length="121">
            <donor d_prob="0.915" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97397" g_stop="97013" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="389" r_length="385" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="390" polyA_stop="402"/>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E288598" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288598" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="97522" e_stop="97519"/>
          <exon e_start="97397" e_stop="97013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGTATTGTCATATTGTTAAGGACTATGTTGGGATTTTTTTGTGCCTTGTGGGTGTATGGCTAAATTTCCTTATTGCTTGGACATCCTTCTTATATACTCTTCCTTTGATTGTTCCTCTTCAGGAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGCTGCTCTTAATTTTTGCAGTGTTGCCTATGTAAACATGTGTACGGATGGAGAGATTTGCTCTTAGTTTTTCCCAGTAGAAAAAAGATGGATCTCATGCACAATTTATTTTGGATCTTTGAAGTCAGGAGCATGTTATCTCGTTGCATCATATTGTCTGCTAACGTTACTTTTGTATCGTGTACAATTATGTTCTTCCTTGTCAAGTTACTCAACTAAATTGGTCACTTCAGCATCTATACTCTGAGTAAAGTGACATAGAATTATATTTGGACCAAATTGGGAATTGAGATAAATAAATATTAAGTTTGATG</genome_strand>
        <mrna_strand>GCTG.........................................................................................................................GAAAGCCTATGGCACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGCTGCTCTTAATTTTTGCAGTGTTGCCTATGTAAACATGTGTACGGATGGAGAGATTTGCTCTTAGTTTTTCCCAGTAGAAAAAAGATGGATCTCATGCACAATTTATTTTGGATCTTTGAAGTCAGGAGCATGTTATCTCGTTGCATCATATTGTCTGCTAACGTTACTTTTGTATCGTGTACAATTATGTTCTTCCTTGTCAAGTTACTCAACTAAATTGGTCACTTCAGCATCTATACTCTGAGTAAAGTGACATAGAATTATATTTGGACCAAATTGGGAATTGAGATAAATAAATATTAAGTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733807" ref_strand="+" ref_description="SGN-E733807 [LB11AA04]">
      <seq>aagccctagcgtctcttcaatttcttcagcaacaatgaagctcgttagatttttgatgaagctgaacaacgagactgtctcaattgagctcaaaaacggcaccgttgttcatggaaccattacaggtgtggatgttagcatgaacacacatctgaaggctgtcaaaattacgctaaaagggaagaatccagtgacgctggatcacctgagtgtgaggggtaacaacatccgttattacatcctccctgacagcttaaatcttgagacactgctggtggaagaaacacctagggtgaagccaaagaagccaacagctggaaagcctatgggacgtggtcgtgggcgcggtcgtgggcgtggacgtggtcgaggccgctaaatgcattccagctgctcttaatttttgcagtgttgcctatgtaaacatgtgtacggatggagagatttgctcttagtttttcccagtagaaaaaagatggatctcatgcacaatttattttggatctttgaagtcaggagcatgttatctcgttgcatcatattgtctgctaacgttacttttgtatcgtgtacaattatgttcttccttgtcaagttactcaactaaattggtcacttcagcatctatactctgagtaaagtgacatagaattatatttggaccaaattgggaattgagataaataaatattaagtttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100214" stop="96715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99914" g_stop="99867" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99866" i_stop="99786" i_length="81">
            <donor d_prob="0.346" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99785" g_stop="99709" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="125" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99708" i_stop="97711" i_length="1998">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97710" g_stop="97519" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="317" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97518" i_stop="97398" i_length="121">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97397" g_stop="97016" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="699" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="700" polyA_stop="710"/>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E733807" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99914" e_stop="99867"/>
          <exon e_start="99785" e_stop="99709"/>
          <exon e_start="97710" e_stop="97519"/>
          <exon e_start="97397" e_stop="97016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCCTAGCGTCTCTTCAATTTCTTCAGCAACAATGAAGCTCGTTAGGTTCATGCGATATCTTCATCTTTTGAGTTTCTTTTCCAGTGTGCTTAGCAATGGATTTAACTTTTACCTTTTTTTGTGCAGATTTTTGATGAAGCTGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGCACCGTTGTTCATGGAACCATTACAGGTCACCCTCCCTATCTTTCTGTCTATTTCTTTGTTATCTATATTTAGGTATTTCCCTGTCAAGTCTAAAATGAACAATCTGAACGTATGTAATTGCTGAATTGCTCGCTCCAATAGGTAAATTAAGAATGTGCTTGTATAAAATTCATTTCCTGGGTTCACAAGTTTTTTGGTAGTGTCGCTAACTGAAAGTCTAGTTGCTGGGTGGTATATGGAAGTTGCTGAACTACAACAATAACATACTACCCAGTGTAATTCCACAAGTGGTGAGGTCTTGGGAGACAGAGTGTTTGCAAGCCTTACCCCTACCTCGTAGTGTTAAAGAGGCTGTTTCCAATAGATTCTCATGTTTAAATAAACCATTTCCAAACCATTTTTTAAATAAAGGATATATAAAAATAAGTGCTCATGACAGACAAGTGAGGTTTTGCTCAAGTAGTTGAGCACTTCCACCATCAACTAGTAGGTTGAGGGTTTGGGTCAGAGGATAGATGGGAACACTATTGATCCTTCTAGTCTCATGGGGGTGGGGTGGAAAAATGGAGCAACAACAACAACGAAAGCAAGTTGCTAAACTGTCTTTGGTTTATGCCACAAGTTAAGTTAGTTCATAGCGAATGTTAACTGCAATAGTTTACTTCACTCTCCTTCACTTCCACTGTGAGTAATTATGTATGTCCATAAATGCATGGAGCTAGGACTGAGAGGCTATAGAAAGTATACGAGGTAACTCGTCTCAATCTGTCTACTCCTCTCACTACCCTTCTGAATATGTCATCTTCTTATCCTCTCTGATTCACACGTATTATCTCTACTTCTGTCCTCCTTCAACTATGAAGTTCCTTTCAAATACCAACTGGAATTCATTCTCAAGTGCAGAGCTATTTCTGCCTATCATCACTGTAATTTATGTCTACACTCTAGAGCACCGTAGTTCCTCTCAGTTAATGCGTTAATTATACTCTGCCAATAAGAATAACATCTCTCATTCACTTTTTGTGGCTATAAAAATTGGATTATTACACAACTGAAGAATTTTGAAGTGTCACTATAATAATTCAACAATTCCTTCAATGAATTTGTATGCATTTAAATACAACTATGATGTCTCAATCCCAAACTAGTTGGTATGTCTATATTAGTGTCCTATATTTGTTCTGCTTTATTTGGACCATTTCATTAATTCACAGTTCGTTTACTTAAAATACAAATCTCTATATTGAAAAACAAAACAAACAAAAAAAAAAGAAATTATGGGAGTGAACATGGGATTCTTATCATCTTTTTGTCATTTTCTTAATATTTTTCATAAGTTAACTCCATAGATATATTCTTTGCCTTAAAACTTAAACTATGTTTGACTTTGGTGGAAGTGGCGGCGTTTGCGAATGGCTATGTTTAGCGTGGGGGGTGGAAGTGATAGTGTTTGCGAATGAGTGTGTTTAGCATGGGGGTTGAAGGGTAAGTCAGGGGTAAATTAGTAATTTGAATTTTAAGTTGGGAGTTGATGCTTTAAAGTAATATAGATAGATATAGACAACTACTTTATCATCTGCAAGAAAATCATACAGTAGCTTCTTTGTCTGGCAGTAGAGATGCCTTAGCAAACTTAGATAGGCTTCTTATGGCAAGTTGCATCGAAAATATCAAATTTTGCAAGGAAAATAGCCATATATGTATTGCAGAGTTTATCTCTGTTCTAGATAACTGTAGTAGTCAAAAGTAAAAATTTGTCCTGTTCTCATATTTTGAGACCTATAGCATTTCTCTTTTTCTGTTGGTTGTCCTTTCCATGCTTTTGACTGTTATTCCTTGAGGGGTTGCTTATACTTGCAGAAAATTGGTAGATATATTCGGGATATAGAAATATGTATTTGAGCATATCAGTATGTGTTTTGATATTAACTAGGCACAGCGGCTATTAAATCTGTCTCCTTATTGAAGTTGCTAGATTGAGAGCTGTGAGTTATAGCTTCTAAAGGCAGTTACATTTTTACAGGTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGGAAGAATCCAGTGACGCTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACACTGCTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTGGTATTGTCATATTGTTAAGGACTATGTTGGGATTTTTTTGTGCCTTGTGGGTGTATGGCTAAATTTCCTTATTGCTTGGACATCCTTCTTATATACTCTTCCTTTGATTGTTCCTCTTCAGGAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGCTGCTCTTAATTTTTGCAGTGTTGCCTATGTAAACATGTGTACGGATGGAGAGATTTGCTCTTAGTTTTTCCCAGTAGAAAAAAGATGGATCTCATGCACAATTTATTTTGGATCTTTGAAGTCAGGAGCATGTTATCTCGTTGCATCATATTGTCTGCTAACGTTACTTTTGTATCGTGTACAATTATGTTCTTCCTTGTCAAGTTACTCAACTAAATTGGTCACTTCAGCATCTATACTCTGAGTAAAGTGACATAGAATTATATTTGGACCAAATTGGGAATTGAGATAAATAAATATTAAGTTTG</genome_strand>
        <mrna_strand>AAGCCCTAGCGTCTCTTCAATTTCTTCAGCAACAATGAAGCTCGTTAG.................................................................................ATTTTTGATGAAGCTGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGCACCGTTGTTCATGGAACCATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGGAAGAATCCAGTGACGCTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACACTGCTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTG.........................................................................................................................GAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGCTGCTCTTAATTTTTGCAGTGTTGCCTATGTAAACATGTGTACGGATGGAGAGATTTGCTCTTAGTTTTTCCCAGTAGAAAAAAGATGGATCTCATGCACAATTTATTTTGGATCTTTGAAGTCAGGAGCATGTTATCTCGTTGCATCATATTGTCTGCTAACGTTACTTTTGTATCGTGTACAATTATGTTCTTCCTTGTCAAGTTACTCAACTAAATTGGTCACTTCAGCATCTATACTCTGAGTAAAGTGACATAGAATTATATTTGGACCAAATTGGGAATTGAGATAAATAAATATTAAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310051" ref_strand="+" ref_description="SGN-E310051 [cLEZ-8-A20]">
      <seq>ctcgtgccgaattcggcacgaggtttcttcagcaacaatgaagctcgttagatttttgatgaagctgaacaacgagactgtctcaattgagctcaaaaacggcaccgttgttcatggaaccattacaggtgtggatgttagcatgaacacacatctgaaggctgtcaaaattacgctaaaagggaagaatccagtgacgctggatcacctgagtgtgaggggtaacaacatccgttattacatcctccctgacagcttaaatcttgagacactgctggtggaagaaacacctagggtgaagccaaagaagccaacagctggaaagcctatgggacgtggtcgtgggcgcggtcgtgggcgtggacgtggtcgaggccgctaaatgcattccagctgctcttaatttttgcagtgttgcctatgtaaacatgtgtacggatggagagatttgctcttagtttttcccagtagaaaaaagatggatctcatgcacaatttattttggatctttgaagtcaggagcatgttatctcgttgcatcatattgtctgctaacgttacttttgtatcgtgtacaattatgttcttccttgtcaagttactcaactaaattggtcacttcagcatctatactctgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100194" stop="96778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99894" g_stop="99867" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="51" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99866" i_stop="99786" i_length="81">
            <donor d_prob="0.346" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99785" g_stop="99709" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="128" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99708" i_stop="97711" i_length="1998">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97710" g_stop="97519" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="320" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97518" i_stop="97398" i_length="121">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97397" g_stop="97078" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="640" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E310051" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99894" e_stop="99867"/>
          <exon e_start="99785" e_stop="99709"/>
          <exon e_start="97710" e_stop="97519"/>
          <exon e_start="97397" e_stop="97078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCAGCAACAATGAAGCTCGTTAGGTTCATGCGATATCTTCATCTTTTGAGTTTCTTTTCCAGTGTGCTTAGCAATGGATTTAACTTTTACCTTTTTTTGTGCAGATTTTTGATGAAGCTGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGCACCGTTGTTCATGGAACCATTACAGGTCACCCTCCCTATCTTTCTGTCTATTTCTTTGTTATCTATATTTAGGTATTTCCCTGTCAAGTCTAAAATGAACAATCTGAACGTATGTAATTGCTGAATTGCTCGCTCCAATAGGTAAATTAAGAATGTGCTTGTATAAAATTCATTTCCTGGGTTCACAAGTTTTTTGGTAGTGTCGCTAACTGAAAGTCTAGTTGCTGGGTGGTATATGGAAGTTGCTGAACTACAACAATAACATACTACCCAGTGTAATTCCACAAGTGGTGAGGTCTTGGGAGACAGAGTGTTTGCAAGCCTTACCCCTACCTCGTAGTGTTAAAGAGGCTGTTTCCAATAGATTCTCATGTTTAAATAAACCATTTCCAAACCATTTTTTAAATAAAGGATATATAAAAATAAGTGCTCATGACAGACAAGTGAGGTTTTGCTCAAGTAGTTGAGCACTTCCACCATCAACTAGTAGGTTGAGGGTTTGGGTCAGAGGATAGATGGGAACACTATTGATCCTTCTAGTCTCATGGGGGTGGGGTGGAAAAATGGAGCAACAACAACAACGAAAGCAAGTTGCTAAACTGTCTTTGGTTTATGCCACAAGTTAAGTTAGTTCATAGCGAATGTTAACTGCAATAGTTTACTTCACTCTCCTTCACTTCCACTGTGAGTAATTATGTATGTCCATAAATGCATGGAGCTAGGACTGAGAGGCTATAGAAAGTATACGAGGTAACTCGTCTCAATCTGTCTACTCCTCTCACTACCCTTCTGAATATGTCATCTTCTTATCCTCTCTGATTCACACGTATTATCTCTACTTCTGTCCTCCTTCAACTATGAAGTTCCTTTCAAATACCAACTGGAATTCATTCTCAAGTGCAGAGCTATTTCTGCCTATCATCACTGTAATTTATGTCTACACTCTAGAGCACCGTAGTTCCTCTCAGTTAATGCGTTAATTATACTCTGCCAATAAGAATAACATCTCTCATTCACTTTTTGTGGCTATAAAAATTGGATTATTACACAACTGAAGAATTTTGAAGTGTCACTATAATAATTCAACAATTCCTTCAATGAATTTGTATGCATTTAAATACAACTATGATGTCTCAATCCCAAACTAGTTGGTATGTCTATATTAGTGTCCTATATTTGTTCTGCTTTATTTGGACCATTTCATTAATTCACAGTTCGTTTACTTAAAATACAAATCTCTATATTGAAAAACAAAACAAACAAAAAAAAAAGAAATTATGGGAGTGAACATGGGATTCTTATCATCTTTTTGTCATTTTCTTAATATTTTTCATAAGTTAACTCCATAGATATATTCTTTGCCTTAAAACTTAAACTATGTTTGACTTTGGTGGAAGTGGCGGCGTTTGCGAATGGCTATGTTTAGCGTGGGGGGTGGAAGTGATAGTGTTTGCGAATGAGTGTGTTTAGCATGGGGGTTGAAGGGTAAGTCAGGGGTAAATTAGTAATTTGAATTTTAAGTTGGGAGTTGATGCTTTAAAGTAATATAGATAGATATAGACAACTACTTTATCATCTGCAAGAAAATCATACAGTAGCTTCTTTGTCTGGCAGTAGAGATGCCTTAGCAAACTTAGATAGGCTTCTTATGGCAAGTTGCATCGAAAATATCAAATTTTGCAAGGAAAATAGCCATATATGTATTGCAGAGTTTATCTCTGTTCTAGATAACTGTAGTAGTCAAAAGTAAAAATTTGTCCTGTTCTCATATTTTGAGACCTATAGCATTTCTCTTTTTCTGTTGGTTGTCCTTTCCATGCTTTTGACTGTTATTCCTTGAGGGGTTGCTTATACTTGCAGAAAATTGGTAGATATATTCGGGATATAGAAATATGTATTTGAGCATATCAGTATGTGTTTTGATATTAACTAGGCACAGCGGCTATTAAATCTGTCTCCTTATTGAAGTTGCTAGATTGAGAGCTGTGAGTTATAGCTTCTAAAGGCAGTTACATTTTTACAGGTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGGAAGAATCCAGTGACGCTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACACTGCTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTGGTATTGTCATATTGTTAAGGACTATGTTGGGATTTTTTTGTGCCTTGTGGGTGTATGGCTAAATTTCCTTATTGCTTGGACATCCTTCTTATATACTCTTCCTTTGATTGTTCCTCTTCAGGAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGCTGCTCTTAATTTTTGCAGTGTTGCCTATGTAAACATGTGTACGGATGGAGAGATTTGCTCTTAGTTTTTCCCAGTAGAAAAAAGATGGATCTCATGCACAATTTATTTTGGATCTTTGAAGTCAGGAGCATGTTATCTCGTTGCATCATATTGTCTGCTAACGTTACTTTTGTATCGTGTACAATTATGTTCTTCCTTGTCAAGTTACTCAACTAAATTGGTCACTTCAGCATCTATACTCTGAGT</genome_strand>
        <mrna_strand>TTTCTTCAGCAACAATGAAGCTCGTTAG.................................................................................ATTTTTGATGAAGCTGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGCACCGTTGTTCATGGAACCATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGGAAGAATCCAGTGACGCTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACACTGCTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTG.........................................................................................................................GAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGCTGCTCTTAATTTTTGCAGTGTTGCCTATGTAAACATGTGTACGGATGGAGAGATTTGCTCTTAGTTTTTCCCAGTAGAAAAAAGATGGATCTCATGCACAATTTATTTTGGATCTTTGAAGTCAGGAGCATGTTATCTCGTTGCATCATATTGTCTGCTAACGTTACTTTTGTATCGTGTACAATTATGTTCTTCCTTGTCAAGTTACTCAACTAAATTGGTCACTTCAGCATCTATACTCTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714991" ref_strand="+" ref_description="SGN-E714991 [FB13AB02]">
      <seq>cttcgacttaagccctagcgtctcttcaatttcttcagcaacaatgaagctcgttagatttttgatgaagctgaacaacgagactgtctcaattgagctcaaaaacggcaccgttgttcatggaaccattacaggtgtggatgttagcatgaacacacatctgaaggctgtcaaaattacgctaaaagggaagaatccagtgacgctggatcacctgagtgtgaggggtaacaacatccgttattacatcctccctgacagcttaaatcttgagacactgctggtggaagaaacacctagggtgaagccaaagaagccaacagctggaaagcctatgggacgtggtcgtgggcgcggtcgtgggcgtggacgtggtcgaggccgctaaatgcattccagctgctcttaatttttgcagtgttgcctatgtaaacatgtgtacggatggagagatttgctcttagtttttcccagtagaaaaaagatggatctcatgcacaatttattttggatctttgaagtcaggagcatgttatctcgttgcatcatattgtctgctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100223" stop="96863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99923" g_stop="99867" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99866" i_stop="99786" i_length="81">
            <donor d_prob="0.346" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99785" g_stop="99709" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="134" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99708" i_stop="97711" i_length="1998">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97710" g_stop="97519" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="326" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97518" i_stop="97398" i_length="121">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97397" g_stop="97162" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="562" r_length="236" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E714991" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99923" e_stop="99867"/>
          <exon e_start="99785" e_stop="99709"/>
          <exon e_start="97710" e_stop="97519"/>
          <exon e_start="97397" e_stop="97162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGACTTAAGCCCTAGCGTCTCTTCAATTTCTTCAGCAACAATGAAGCTCGTTAGGTTCATGCGATATCTTCATCTTTTGAGTTTCTTTTCCAGTGTGCTTAGCAATGGATTTAACTTTTACCTTTTTTTGTGCAGATTTTTGATGAAGCTGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGCACCGTTGTTCATGGAACCATTACAGGTCACCCTCCCTATCTTTCTGTCTATTTCTTTGTTATCTATATTTAGGTATTTCCCTGTCAAGTCTAAAATGAACAATCTGAACGTATGTAATTGCTGAATTGCTCGCTCCAATAGGTAAATTAAGAATGTGCTTGTATAAAATTCATTTCCTGGGTTCACAAGTTTTTTGGTAGTGTCGCTAACTGAAAGTCTAGTTGCTGGGTGGTATATGGAAGTTGCTGAACTACAACAATAACATACTACCCAGTGTAATTCCACAAGTGGTGAGGTCTTGGGAGACAGAGTGTTTGCAAGCCTTACCCCTACCTCGTAGTGTTAAAGAGGCTGTTTCCAATAGATTCTCATGTTTAAATAAACCATTTCCAAACCATTTTTTAAATAAAGGATATATAAAAATAAGTGCTCATGACAGACAAGTGAGGTTTTGCTCAAGTAGTTGAGCACTTCCACCATCAACTAGTAGGTTGAGGGTTTGGGTCAGAGGATAGATGGGAACACTATTGATCCTTCTAGTCTCATGGGGGTGGGGTGGAAAAATGGAGCAACAACAACAACGAAAGCAAGTTGCTAAACTGTCTTTGGTTTATGCCACAAGTTAAGTTAGTTCATAGCGAATGTTAACTGCAATAGTTTACTTCACTCTCCTTCACTTCCACTGTGAGTAATTATGTATGTCCATAAATGCATGGAGCTAGGACTGAGAGGCTATAGAAAGTATACGAGGTAACTCGTCTCAATCTGTCTACTCCTCTCACTACCCTTCTGAATATGTCATCTTCTTATCCTCTCTGATTCACACGTATTATCTCTACTTCTGTCCTCCTTCAACTATGAAGTTCCTTTCAAATACCAACTGGAATTCATTCTCAAGTGCAGAGCTATTTCTGCCTATCATCACTGTAATTTATGTCTACACTCTAGAGCACCGTAGTTCCTCTCAGTTAATGCGTTAATTATACTCTGCCAATAAGAATAACATCTCTCATTCACTTTTTGTGGCTATAAAAATTGGATTATTACACAACTGAAGAATTTTGAAGTGTCACTATAATAATTCAACAATTCCTTCAATGAATTTGTATGCATTTAAATACAACTATGATGTCTCAATCCCAAACTAGTTGGTATGTCTATATTAGTGTCCTATATTTGTTCTGCTTTATTTGGACCATTTCATTAATTCACAGTTCGTTTACTTAAAATACAAATCTCTATATTGAAAAACAAAACAAACAAAAAAAAAAGAAATTATGGGAGTGAACATGGGATTCTTATCATCTTTTTGTCATTTTCTTAATATTTTTCATAAGTTAACTCCATAGATATATTCTTTGCCTTAAAACTTAAACTATGTTTGACTTTGGTGGAAGTGGCGGCGTTTGCGAATGGCTATGTTTAGCGTGGGGGGTGGAAGTGATAGTGTTTGCGAATGAGTGTGTTTAGCATGGGGGTTGAAGGGTAAGTCAGGGGTAAATTAGTAATTTGAATTTTAAGTTGGGAGTTGATGCTTTAAAGTAATATAGATAGATATAGACAACTACTTTATCATCTGCAAGAAAATCATACAGTAGCTTCTTTGTCTGGCAGTAGAGATGCCTTAGCAAACTTAGATAGGCTTCTTATGGCAAGTTGCATCGAAAATATCAAATTTTGCAAGGAAAATAGCCATATATGTATTGCAGAGTTTATCTCTGTTCTAGATAACTGTAGTAGTCAAAAGTAAAAATTTGTCCTGTTCTCATATTTTGAGACCTATAGCATTTCTCTTTTTCTGTTGGTTGTCCTTTCCATGCTTTTGACTGTTATTCCTTGAGGGGTTGCTTATACTTGCAGAAAATTGGTAGATATATTCGGGATATAGAAATATGTATTTGAGCATATCAGTATGTGTTTTGATATTAACTAGGCACAGCGGCTATTAAATCTGTCTCCTTATTGAAGTTGCTAGATTGAGAGCTGTGAGTTATAGCTTCTAAAGGCAGTTACATTTTTACAGGTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGGAAGAATCCAGTGACGCTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACACTGCTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTGGTATTGTCATATTGTTAAGGACTATGTTGGGATTTTTTTGTGCCTTGTGGGTGTATGGCTAAATTTCCTTATTGCTTGGACATCCTTCTTATATACTCTTCCTTTGATTGTTCCTCTTCAGGAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGCTGCTCTTAATTTTTGCAGTGTTGCCTATGTAAACATGTGTACGGATGGAGAGATTTGCTCTTAGTTTTTCCCAGTAGAAAAAAGATGGATCTCATGCACAATTTATTTTGGATCTTTGAAGTCAGGAGCATGTTATCTCGTTGCATCATATTGTCTGCTAAC</genome_strand>
        <mrna_strand>CTTCGACTTAAGCCCTAGCGTCTCTTCAATTTCTTCAGCAACAATGAAGCTCGTTAG.................................................................................ATTTTTGATGAAGCTGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGCACCGTTGTTCATGGAACCATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGGAAGAATCCAGTGACGCTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACACTGCTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTG.........................................................................................................................GAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGCTGCTCTTAATTTTTGCAGTGTTGCCTATGTAAACATGTGTACGGATGGAGAGATTTGCTCTTAGTTTTTCCCAGTAGAAAAAAGATGGATCTCATGCACAATTTATTTTGGATCTTTGAAGTCAGGAGCATGTTATCTCGTTGCATCATATTGTCTGCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733600" ref_strand="+" ref_description="SGN-E733600 [LB10BG10]">
      <seq>ctaaagccctagattagtgtgttttcaatttcttcagcaagcaacaatgaagctcgtcagatttttgatgaagctgaacaacgagactgtctcaattgagctcaaaaacggcaccgttgttcatggaaccattacaggtgtggatgttagcatgaacacacatctgaaggctgtcaaaattacgctaaaaggaaagaatccagtgacattggatcacctgagtgtgaggggtaacaacatccgttattacatcctccctgacagcttaaatcttgagacgttactggtggaagaaacacctagggtgaagccaaagaagccaacagctggaaagcctatgggacgtggtcgtgggcgcggtcgtgggcgtggacgtggtcgaggccgctaaatgcattccggctggtctatttttttgcagtcttgcctatgtaaacatgtgtacggattgatagatttgctgttagtttttatcctgtagaaaaaagatggatctcatgcaacaatttattttggatctttgaagtcaggagcatgttatctcgttgcatcatattgtctgctaacattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100208" stop="96858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99885" g_stop="99867" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="60" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99866" i_stop="99786" i_length="81">
            <donor d_prob="0.346" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99785" g_stop="99709" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="137" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99708" i_stop="97711" i_length="1998">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97710" g_stop="97519" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="329" r_length="192" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97518" i_stop="97398" i_length="121">
            <donor d_prob="0.915" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97397" g_stop="97162" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="567" r_length="238" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="571" polyA_stop="580"/>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E733600" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99885" e_stop="99867"/>
          <exon e_start="99785" e_stop="99709"/>
          <exon e_start="97710" e_stop="97519"/>
          <exon e_start="97397" e_stop="97162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATGAAGCTCGTTAGGTTCATGCGATATCTTCATCTTTTGAGTTTCTTTTCCAGTGTGCTTAGCAATGGATTTAACTTTTACCTTTTTTTGTGCAGATTTTTGATGAAGCTGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGCACCGTTGTTCATGGAACCATTACAGGTCACCCTCCCTATCTTTCTGTCTATTTCTTTGTTATCTATATTTAGGTATTTCCCTGTCAAGTCTAAAATGAACAATCTGAACGTATGTAATTGCTGAATTGCTCGCTCCAATAGGTAAATTAAGAATGTGCTTGTATAAAATTCATTTCCTGGGTTCACAAGTTTTTTGGTAGTGTCGCTAACTGAAAGTCTAGTTGCTGGGTGGTATATGGAAGTTGCTGAACTACAACAATAACATACTACCCAGTGTAATTCCACAAGTGGTGAGGTCTTGGGAGACAGAGTGTTTGCAAGCCTTACCCCTACCTCGTAGTGTTAAAGAGGCTGTTTCCAATAGATTCTCATGTTTAAATAAACCATTTCCAAACCATTTTTTAAATAAAGGATATATAAAAATAAGTGCTCATGACAGACAAGTGAGGTTTTGCTCAAGTAGTTGAGCACTTCCACCATCAACTAGTAGGTTGAGGGTTTGGGTCAGAGGATAGATGGGAACACTATTGATCCTTCTAGTCTCATGGGGGTGGGGTGGAAAAATGGAGCAACAACAACAACGAAAGCAAGTTGCTAAACTGTCTTTGGTTTATGCCACAAGTTAAGTTAGTTCATAGCGAATGTTAACTGCAATAGTTTACTTCACTCTCCTTCACTTCCACTGTGAGTAATTATGTATGTCCATAAATGCATGGAGCTAGGACTGAGAGGCTATAGAAAGTATACGAGGTAACTCGTCTCAATCTGTCTACTCCTCTCACTACCCTTCTGAATATGTCATCTTCTTATCCTCTCTGATTCACACGTATTATCTCTACTTCTGTCCTCCTTCAACTATGAAGTTCCTTTCAAATACCAACTGGAATTCATTCTCAAGTGCAGAGCTATTTCTGCCTATCATCACTGTAATTTATGTCTACACTCTAGAGCACCGTAGTTCCTCTCAGTTAATGCGTTAATTATACTCTGCCAATAAGAATAACATCTCTCATTCACTTTTTGTGGCTATAAAAATTGGATTATTACACAACTGAAGAATTTTGAAGTGTCACTATAATAATTCAACAATTCCTTCAATGAATTTGTATGCATTTAAATACAACTATGATGTCTCAATCCCAAACTAGTTGGTATGTCTATATTAGTGTCCTATATTTGTTCTGCTTTATTTGGACCATTTCATTAATTCACAGTTCGTTTACTTAAAATACAAATCTCTATATTGAAAAACAAAACAAACAAAAAAAAAAGAAATTATGGGAGTGAACATGGGATTCTTATCATCTTTTTGTCATTTTCTTAATATTTTTCATAAGTTAACTCCATAGATATATTCTTTGCCTTAAAACTTAAACTATGTTTGACTTTGGTGGAAGTGGCGGCGTTTGCGAATGGCTATGTTTAGCGTGGGGGGTGGAAGTGATAGTGTTTGCGAATGAGTGTGTTTAGCATGGGGGTTGAAGGGTAAGTCAGGGGTAAATTAGTAATTTGAATTTTAAGTTGGGAGTTGATGCTTTAAAGTAATATAGATAGATATAGACAACTACTTTATCATCTGCAAGAAAATCATACAGTAGCTTCTTTGTCTGGCAGTAGAGATGCCTTAGCAAACTTAGATAGGCTTCTTATGGCAAGTTGCATCGAAAATATCAAATTTTGCAAGGAAAATAGCCATATATGTATTGCAGAGTTTATCTCTGTTCTAGATAACTGTAGTAGTCAAAAGTAAAAATTTGTCCTGTTCTCATATTTTGAGACCTATAGCATTTCTCTTTTTCTGTTGGTTGTCCTTTCCATGCTTTTGACTGTTATTCCTTGAGGGGTTGCTTATACTTGCAGAAAATTGGTAGATATATTCGGGATATAGAAATATGTATTTGAGCATATCAGTATGTGTTTTGATATTAACTAGGCACAGCGGCTATTAAATCTGTCTCCTTATTGAAGTTGCTAGATTGAGAGCTGTGAGTTATAGCTTCTAAAGGCAGTTACATTTTTACAGGTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGGAAGAATCCAGTGACGCTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACACTGCTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTGGTATTGTCATATTGTTAAGGACTATGTTGGGATTTTTTTGTGCCTTGTGGGTGTATGGCTAAATTTCCTTATTGCTTGGACATCCTTCTTATATACTCTTCCTTTGATTGTTCCTCTTCAGGAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGCTGCTCTTAATTTTTGCAGTGTTGCCTATGTAAACATGTGTACGGATGGAGAGATTTGCTCTTAGTTTTT-CCCAGTAGAAAAAAGATGGATCTCATGC-ACAATTTATTTTGGATCTTTGAAGTCAGGAGCATGTTATCTCGTTGCATCATATTGTCTGCTAAC</genome_strand>
        <mrna_strand>CAACAATGAAGCTCGTCAG.................................................................................ATTTTTGATGAAGCTGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGCACCGTTGTTCATGGAACCATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGAAAGAATCCAGTGACATTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACGTTACTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTG.........................................................................................................................GAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCGGCTGGTCTATTTTTTTGCAGTCTTGCCTATGTAAACATGTGTACGGATTGATAGATTTGCTGTTAGTTTTTATCCTGTAGAAAAAAGATGGATCTCATGCAACAATTTATTTTGGATCTTTGAAGTCAGGAGCATGTTATCTCGTTGCATCATATTGTCTGCTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733606" ref_strand="+" ref_description="SGN-E733606 [LB10BH04]">
      <seq>gctctaaactaaagccctagattagtgtgttttcaatttcttcagcaagcaacaatgaagctcgtcagatttttgatgaagctgaacaacgagactgtctcaattgagctcaaaaacggcaccgttgttcatggaaccattacaggtgtggatgttagcatgaacacacatctgaaggctgtcaaaattacgctaaaaggaaagaatccagtgacattggatcacctgagtgtgaggggtaacaacatccgttattacatcctccctgacagcttaaatcttgagacgttactggtggaagaaacacctagggtgaagccaaagaagccaacagctggaaagcctatgggacgtggtcgtgggcgcggtcgtgggcgtggacgtggtcgaggccgctaaatgcattccggctggtctatttttttgcagtcttgcctatgtaaacatgtgtacggattgatagatttgctgttagtttttatcctgtagaaaaaagatggatctcatgcaacaatttattttggatctttgaagtcaggagcatgttatctcgttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100208" stop="96874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99885" g_stop="99867" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="68" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99866" i_stop="99786" i_length="81">
            <donor d_prob="0.346" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99785" g_stop="99709" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="145" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99708" i_stop="97711" i_length="1998">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97710" g_stop="97519" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="337" r_length="192" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97518" i_stop="97398" i_length="121">
            <donor d_prob="0.915" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97397" g_stop="97171" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="566" r_length="229" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E733606" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99885" e_stop="99867"/>
          <exon e_start="99785" e_stop="99709"/>
          <exon e_start="97710" e_stop="97519"/>
          <exon e_start="97397" e_stop="97171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATGAAGCTCGTTAGGTTCATGCGATATCTTCATCTTTTGAGTTTCTTTTCCAGTGTGCTTAGCAATGGATTTAACTTTTACCTTTTTTTGTGCAGATTTTTGATGAAGCTGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGCACCGTTGTTCATGGAACCATTACAGGTCACCCTCCCTATCTTTCTGTCTATTTCTTTGTTATCTATATTTAGGTATTTCCCTGTCAAGTCTAAAATGAACAATCTGAACGTATGTAATTGCTGAATTGCTCGCTCCAATAGGTAAATTAAGAATGTGCTTGTATAAAATTCATTTCCTGGGTTCACAAGTTTTTTGGTAGTGTCGCTAACTGAAAGTCTAGTTGCTGGGTGGTATATGGAAGTTGCTGAACTACAACAATAACATACTACCCAGTGTAATTCCACAAGTGGTGAGGTCTTGGGAGACAGAGTGTTTGCAAGCCTTACCCCTACCTCGTAGTGTTAAAGAGGCTGTTTCCAATAGATTCTCATGTTTAAATAAACCATTTCCAAACCATTTTTTAAATAAAGGATATATAAAAATAAGTGCTCATGACAGACAAGTGAGGTTTTGCTCAAGTAGTTGAGCACTTCCACCATCAACTAGTAGGTTGAGGGTTTGGGTCAGAGGATAGATGGGAACACTATTGATCCTTCTAGTCTCATGGGGGTGGGGTGGAAAAATGGAGCAACAACAACAACGAAAGCAAGTTGCTAAACTGTCTTTGGTTTATGCCACAAGTTAAGTTAGTTCATAGCGAATGTTAACTGCAATAGTTTACTTCACTCTCCTTCACTTCCACTGTGAGTAATTATGTATGTCCATAAATGCATGGAGCTAGGACTGAGAGGCTATAGAAAGTATACGAGGTAACTCGTCTCAATCTGTCTACTCCTCTCACTACCCTTCTGAATATGTCATCTTCTTATCCTCTCTGATTCACACGTATTATCTCTACTTCTGTCCTCCTTCAACTATGAAGTTCCTTTCAAATACCAACTGGAATTCATTCTCAAGTGCAGAGCTATTTCTGCCTATCATCACTGTAATTTATGTCTACACTCTAGAGCACCGTAGTTCCTCTCAGTTAATGCGTTAATTATACTCTGCCAATAAGAATAACATCTCTCATTCACTTTTTGTGGCTATAAAAATTGGATTATTACACAACTGAAGAATTTTGAAGTGTCACTATAATAATTCAACAATTCCTTCAATGAATTTGTATGCATTTAAATACAACTATGATGTCTCAATCCCAAACTAGTTGGTATGTCTATATTAGTGTCCTATATTTGTTCTGCTTTATTTGGACCATTTCATTAATTCACAGTTCGTTTACTTAAAATACAAATCTCTATATTGAAAAACAAAACAAACAAAAAAAAAAGAAATTATGGGAGTGAACATGGGATTCTTATCATCTTTTTGTCATTTTCTTAATATTTTTCATAAGTTAACTCCATAGATATATTCTTTGCCTTAAAACTTAAACTATGTTTGACTTTGGTGGAAGTGGCGGCGTTTGCGAATGGCTATGTTTAGCGTGGGGGGTGGAAGTGATAGTGTTTGCGAATGAGTGTGTTTAGCATGGGGGTTGAAGGGTAAGTCAGGGGTAAATTAGTAATTTGAATTTTAAGTTGGGAGTTGATGCTTTAAAGTAATATAGATAGATATAGACAACTACTTTATCATCTGCAAGAAAATCATACAGTAGCTTCTTTGTCTGGCAGTAGAGATGCCTTAGCAAACTTAGATAGGCTTCTTATGGCAAGTTGCATCGAAAATATCAAATTTTGCAAGGAAAATAGCCATATATGTATTGCAGAGTTTATCTCTGTTCTAGATAACTGTAGTAGTCAAAAGTAAAAATTTGTCCTGTTCTCATATTTTGAGACCTATAGCATTTCTCTTTTTCTGTTGGTTGTCCTTTCCATGCTTTTGACTGTTATTCCTTGAGGGGTTGCTTATACTTGCAGAAAATTGGTAGATATATTCGGGATATAGAAATATGTATTTGAGCATATCAGTATGTGTTTTGATATTAACTAGGCACAGCGGCTATTAAATCTGTCTCCTTATTGAAGTTGCTAGATTGAGAGCTGTGAGTTATAGCTTCTAAAGGCAGTTACATTTTTACAGGTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGGAAGAATCCAGTGACGCTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACACTGCTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTGGTATTGTCATATTGTTAAGGACTATGTTGGGATTTTTTTGTGCCTTGTGGGTGTATGGCTAAATTTCCTTATTGCTTGGACATCCTTCTTATATACTCTTCCTTTGATTGTTCCTCTTCAGGAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGCTGCTCTTAATTTTTGCAGTGTTGCCTATGTAAACATGTGTACGGATGGAGAGATTTGCTCTTAGTTTTT-CCCAGTAGAAAAAAGATGGATCTCATGC-ACAATTTATTTTGGATCTTTGAAGTCAGGAGCATGTTATCTCGTTGCATCATATTG</genome_strand>
        <mrna_strand>CAACAATGAAGCTCGTCAG.................................................................................ATTTTTGATGAAGCTGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGCACCGTTGTTCATGGAACCATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGAAAGAATCCAGTGACATTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACGTTACTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTG.........................................................................................................................GAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCGGCTGGTCTATTTTTTTGCAGTCTTGCCTATGTAAACATGTGTACGGATTGATAGATTTGCTGTTAGTTTTTATCCTGTAGAAAAAAGATGGATCTCATGCAACAATTTATTTTGGATCTTTGAAGTCAGGAGCATGTTATCTCGTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218677" ref_strand="+" ref_description="SGN-E218677 [cLEL-18-P5](-)">
      <seq>tgttagcatgaacacacatnctgaaggctgtcaaaattacgctaaaagggaagaatccagtgacgttggatcacctaagtgtgaggggtaacaacatccgttattacatcctccctgacagcttaaatcttgagacgttactggtggaagaaacacctagggtgaagccaaagaagccaacagctggaaagcctatgggacgtggtcgtgggcgcggtcgtgggcgtggacgtggtcgaggccgctaaatgcattccagttggtctatttttttgcagtcttgcctatgtaaacatgtgtacggattgatagatttgctcttagtttttatcctgtagaaaaaagatggatctcatgcaacaatttattttggatctttgaagtcaggagcataaaatctcgttgcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98003" stop="96955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97703" g_stop="97519" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97518" i_stop="97398" i_length="121">
            <donor d_prob="0.915" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97397" g_stop="97173" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="413" r_length="227" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E218677" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97703" e_stop="97519"/>
          <exon e_start="97397" e_stop="97173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTAGCATGAACACACAT-CTGAAGGCTGTCAAAATTACGCTAAAAGGGAAGAATCCAGTGACGCTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACACTGCTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTGGTATTGTCATATTGTTAAGGACTATGTTGGGATTTTTTTGTGCCTTGTGGGTGTATGGCTAAATTTCCTTATTGCTTGGACATCCTTCTTATATACTCTTCCTTTGATTGTTCCTCTTCAGGAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGCTGCTCTTAATTTTTGCAGTGTTGCCTATGTAAACATGTGTACGGATGGAGAGATTTGCTCTTAGTTTTT-CCCAGTAGAAAAAAGATGGATCTCATGC-ACAATTTATTTTGGATCTTTGAAGTCAGGAGCATGTTATCTCGTTGCATCATAT</genome_strand>
        <mrna_strand>TGTTAGCATGAACACACATNCTGAAGGCTGTCAAAATTACGCTAAAAGGGAAGAATCCAGTGACGTTGGATCACCTAAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACGTTACTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTG.........................................................................................................................GAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGTTGGTCTATTTTTTTGCAGTCTTGCCTATGTAAACATGTGTACGGATTGATAGATTTGCTCTTAGTTTTTATCCTGTAGAAAAAAGATGGATCTCATGCAACAATTTATTTTGGATCTTTGAAGTCAGGAGCATAAAATCTCGTTGCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302343" ref_strand="+" ref_description="SGN-E302343 [cLEW-27-C2]">
      <seq>ttgccctaaactaaagccctagattagtgtgttttcaatttcttcagcaagcaacaatgaagctcgtcagatttttgatgaagctgaacaacgagactgtctcaattgagctcaaaaacggcaccgttgttcatggaaccattacaggtgtggatgttagcatgaacacacatctgaaggctgtcaaaattacgctaaaagggaagaatccagtgacgttggatcacctaagtgtgaggggtaacaacatccgttattacatcctccctgacagcttaaatcttgagacgttactggtggaagaaacacctagggtgaagccaaagaagccaacagctggaaagcctatgggacgtggtcgtgggcgcggtcgtgggcgtggacgtggtcgaggccgctaaatgcattccagttggtctatttttttgcagtcttgcctatgtaaacatgtgtacggattgatagatttgctcttagtttttatcctgtagaaaaaagatggatctcatgcaacaatttattttggatctttgaagtcaggagcatgttatctcgttgcatcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100208" stop="96874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99885" g_stop="99867" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="70" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99866" i_stop="99786" i_length="81">
            <donor d_prob="0.346" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99785" g_stop="99709" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="147" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99708" i_stop="97711" i_length="1998">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97710" g_stop="97519" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="339" r_length="192" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97518" i_stop="97398" i_length="121">
            <donor d_prob="0.915" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97397" g_stop="97174" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="565" r_length="226" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E302343" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99885" e_stop="99867"/>
          <exon e_start="99785" e_stop="99709"/>
          <exon e_start="97710" e_stop="97519"/>
          <exon e_start="97397" e_stop="97174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATGAAGCTCGTTAGGTTCATGCGATATCTTCATCTTTTGAGTTTCTTTTCCAGTGTGCTTAGCAATGGATTTAACTTTTACCTTTTTTTGTGCAGATTTTTGATGAAGCTGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGCACCGTTGTTCATGGAACCATTACAGGTCACCCTCCCTATCTTTCTGTCTATTTCTTTGTTATCTATATTTAGGTATTTCCCTGTCAAGTCTAAAATGAACAATCTGAACGTATGTAATTGCTGAATTGCTCGCTCCAATAGGTAAATTAAGAATGTGCTTGTATAAAATTCATTTCCTGGGTTCACAAGTTTTTTGGTAGTGTCGCTAACTGAAAGTCTAGTTGCTGGGTGGTATATGGAAGTTGCTGAACTACAACAATAACATACTACCCAGTGTAATTCCACAAGTGGTGAGGTCTTGGGAGACAGAGTGTTTGCAAGCCTTACCCCTACCTCGTAGTGTTAAAGAGGCTGTTTCCAATAGATTCTCATGTTTAAATAAACCATTTCCAAACCATTTTTTAAATAAAGGATATATAAAAATAAGTGCTCATGACAGACAAGTGAGGTTTTGCTCAAGTAGTTGAGCACTTCCACCATCAACTAGTAGGTTGAGGGTTTGGGTCAGAGGATAGATGGGAACACTATTGATCCTTCTAGTCTCATGGGGGTGGGGTGGAAAAATGGAGCAACAACAACAACGAAAGCAAGTTGCTAAACTGTCTTTGGTTTATGCCACAAGTTAAGTTAGTTCATAGCGAATGTTAACTGCAATAGTTTACTTCACTCTCCTTCACTTCCACTGTGAGTAATTATGTATGTCCATAAATGCATGGAGCTAGGACTGAGAGGCTATAGAAAGTATACGAGGTAACTCGTCTCAATCTGTCTACTCCTCTCACTACCCTTCTGAATATGTCATCTTCTTATCCTCTCTGATTCACACGTATTATCTCTACTTCTGTCCTCCTTCAACTATGAAGTTCCTTTCAAATACCAACTGGAATTCATTCTCAAGTGCAGAGCTATTTCTGCCTATCATCACTGTAATTTATGTCTACACTCTAGAGCACCGTAGTTCCTCTCAGTTAATGCGTTAATTATACTCTGCCAATAAGAATAACATCTCTCATTCACTTTTTGTGGCTATAAAAATTGGATTATTACACAACTGAAGAATTTTGAAGTGTCACTATAATAATTCAACAATTCCTTCAATGAATTTGTATGCATTTAAATACAACTATGATGTCTCAATCCCAAACTAGTTGGTATGTCTATATTAGTGTCCTATATTTGTTCTGCTTTATTTGGACCATTTCATTAATTCACAGTTCGTTTACTTAAAATACAAATCTCTATATTGAAAAACAAAACAAACAAAAAAAAAAGAAATTATGGGAGTGAACATGGGATTCTTATCATCTTTTTGTCATTTTCTTAATATTTTTCATAAGTTAACTCCATAGATATATTCTTTGCCTTAAAACTTAAACTATGTTTGACTTTGGTGGAAGTGGCGGCGTTTGCGAATGGCTATGTTTAGCGTGGGGGGTGGAAGTGATAGTGTTTGCGAATGAGTGTGTTTAGCATGGGGGTTGAAGGGTAAGTCAGGGGTAAATTAGTAATTTGAATTTTAAGTTGGGAGTTGATGCTTTAAAGTAATATAGATAGATATAGACAACTACTTTATCATCTGCAAGAAAATCATACAGTAGCTTCTTTGTCTGGCAGTAGAGATGCCTTAGCAAACTTAGATAGGCTTCTTATGGCAAGTTGCATCGAAAATATCAAATTTTGCAAGGAAAATAGCCATATATGTATTGCAGAGTTTATCTCTGTTCTAGATAACTGTAGTAGTCAAAAGTAAAAATTTGTCCTGTTCTCATATTTTGAGACCTATAGCATTTCTCTTTTTCTGTTGGTTGTCCTTTCCATGCTTTTGACTGTTATTCCTTGAGGGGTTGCTTATACTTGCAGAAAATTGGTAGATATATTCGGGATATAGAAATATGTATTTGAGCATATCAGTATGTGTTTTGATATTAACTAGGCACAGCGGCTATTAAATCTGTCTCCTTATTGAAGTTGCTAGATTGAGAGCTGTGAGTTATAGCTTCTAAAGGCAGTTACATTTTTACAGGTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGGAAGAATCCAGTGACGCTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACACTGCTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTGGTATTGTCATATTGTTAAGGACTATGTTGGGATTTTTTTGTGCCTTGTGGGTGTATGGCTAAATTTCCTTATTGCTTGGACATCCTTCTTATATACTCTTCCTTTGATTGTTCCTCTTCAGGAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGCTGCTCTTAATTTTTGCAGTGTTGCCTATGTAAACATGTGTACGGATGGAGAGATTTGCTCTTAGTTTTT-CCCAGTAGAAAAAAGATGGATCTCATGC-ACAATTTATTTTGGATCTTTGAAGTCAGGAGCATGTTATCTCGTTGCATCATA</genome_strand>
        <mrna_strand>CAACAATGAAGCTCGTCAG.................................................................................ATTTTTGATGAAGCTGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGCACCGTTGTTCATGGAACCATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGGAAGAATCCAGTGACGTTGGATCACCTAAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACGTTACTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTG.........................................................................................................................GAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGTTGGTCTATTTTTTTGCAGTCTTGCCTATGTAAACATGTGTACGGATTGATAGATTTGCTCTTAGTTTTTATCCTGTAGAAAAAAGATGGATCTCATGCAACAATTTATTTTGGATCTTTGAAGTCAGGAGCATGTTATCTCGTTGCATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596594" ref_strand="-" ref_description="SGN-E596594 [40079]">
      <seq>tgtggatgttagcatgaacacacatctgaaggctgtcaaaattacgctaaaaggaaagaatccagtgacgttggatcacctgagtgtgaggggtaacaacatccgttattacatcctccctgacagcttaaatcttgagacgctactggtggaagaaacacctagggtgaagccaaagaagccaacagctggaaagcctatgggacgtggtcgtgggcgcggtcgtgggcgtggacgtggtcgaggccgctaaatacattccagctgctctaatattttgcagtcttgcctatgtaaacatgtgtacggattgagagatttgctcttttagtttttcccagtagaaaaaagatggatctgatgcaacaatttattttggatcttgaagtgaggagcatgttatatcgttgcatcataaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98009" stop="96874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97709" g_stop="97519" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97518" i_stop="97398" i_length="121">
            <donor d_prob="0.915" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97397" g_stop="97175" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="416" r_length="225" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="417" polyA_stop="439"/>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E596594" ref_strand="-">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E596594" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="97709" e_stop="97519"/>
          <exon e_start="97397" e_stop="97175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGGAAGAATCCAGTGACGCTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACACTGCTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTGGTATTGTCATATTGTTAAGGACTATGTTGGGATTTTTTTGTGCCTTGTGGGTGTATGGCTAAATTTCCTTATTGCTTGGACATCCTTCTTATATACTCTTCCTTTGATTGTTCCTCTTCAGGAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGCTGCTCTTAATTTTTGCAGTGTTGCCTATGTAAACATGTGTACGGATGGAGAGATTTGCTC--TTAGTTTTTCCCAGTAGAAAAAAGATGGATCTCATGC-ACAATTTATTTTGGATCTTTGAAGTCAGGAGCATGTTATCTCGTTGCATCAT</genome_strand>
        <mrna_strand>TGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGAAAGAATCCAGTGACGTTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACGCTACTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTG.........................................................................................................................GAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATACATTCCAGCTGCTCTAATATTTTGCAGTCTTGCCTATGTAAACATGTGTACGGATTGAGAGATTTGCTCTTTTAGTTTTTCCCAGTAGAAAAAAGATGGATCTGATGCAACAATTTATTTTGGATC-TTGAAGTGAGGAGCATGTTATATCGTTGCATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251268" ref_strand="+" ref_description="SGN-E251268 [cLEG-10-B17]">
      <seq>ggtggaagaaacacctaaggtgaagccaaagaagccaacaactgggaagcctatgggacgtggtcgtgggcgcggtcgttggcgtggacgtggtcgaggccgcttaatgcaattccagttggtctatttttttgcagtcttgcctatgtaaacatgtgtacggattgatagatttgctcttagtttttatcctgtagaaaaaagatggatctcatgcaacaatttattttggatctttgaagtcaggagcatgttatctcgttgcatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="97862" stop="96876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97562" g_stop="97519" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97518" i_stop="97398" i_length="121">
            <donor d_prob="0.915" d_score="0.95"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97397" g_stop="97175" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="270" r_length="226" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E251268" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>267</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97562" e_stop="97519"/>
          <exon e_start="97397" e_stop="97175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTGGTATTGTCATATTGTTAAGGACTATGTTGGGATTTTTTTGTGCCTTGTGGGTGTATGGCTAAATTTCCTTATTGCTTGGACATCCTTCTTATATACTCTTCCTTTGATTGTTCCTCTTCAGGAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGC-ATTCCAGCTGCTCTTAATTTTTGCAGTGTTGCCTATGTAAACATGTGTACGGATGGAGAGATTTGCTCTTAGTTTTT-CCCAGTAGAAAAAAGATGGATCTCATGC-ACAATTTATTTTGGATCTTTGAAGTCAGGAGCATGTTATCTCGTTGCATCAT</genome_strand>
        <mrna_strand>GGTGGAAGAAACACCTAAGGTGAAGCCAAAGAAGCCAACAACTG.........................................................................................................................GGAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTTGGCGTGGACGTGGTCGAGGCCGCTTAATGCAATTCCAGTTGGTCTATTTTTTTGCAGTCTTGCCTATGTAAACATGTGTACGGATTGATAGATTTGCTCTTAGTTTTTATCCTGTAGAAAAAAGATGGATCTCATGCAACAATTTATTTTGGATCTTTGAAGTCAGGAGCATGTTATCTCGTTGCATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580429" ref_strand="+" ref_description="SGN-E580429 [5672]">
      <seq>ggtgttttcaatttcttcaggcacaatgaagctcgtcagatttttgatgaagctgaacaacgagactgtctcaattgagctcaaaaacggaaccgttgttcatgggaaccattacaggtgtggatgttagcatgaacacacatctgaaggctgtcaaaattacgctaaaaggaaagaatccagtgacgttggatcacctgagtgtgaggggtaacaacatccgttattacatcctccctggacagcttaaatcttgagacgctactggtggaagaaacacctagggtgaagccaaagaagccaacagctggaaagcctatgggacgtggtcgtgggcgcggtcgtgggcgtggacgtggtcgaggccgctaaatacattccagcgtgctctaatattttgcagtcttgcctatgtaaacatgtgtaacggattgagagatttgctcttttagtttttcccagtagaaaaaagatggatctgatgcaacaatttattttggatcttgaagtgaggagcatgttatctcgttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100093" stop="96879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99905" g_stop="99867" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.846"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99866" i_stop="99786" i_length="81">
            <donor d_prob="0.346" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99785" g_stop="99709" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="117" r_length="78" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99708" i_stop="97711" i_length="1998">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97710" g_stop="97519" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="310" r_length="193" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97518" i_stop="97398" i_length="121">
            <donor d_prob="0.915" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97397" g_stop="97179" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="533" r_length="223" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E580429" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E580429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99905" e_stop="99867"/>
          <exon e_start="99785" e_stop="99709"/>
          <exon e_start="97710" e_stop="97519"/>
          <exon e_start="97397" e_stop="97179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCTCTTCAATTTCTTCAGCAACAATGAAGCTCGTTAGGTTCATGCGATATCTTCATCTTTTGAGTTTCTTTTCCAGTGTGCTTAGCAATGGATTTAACTTTTACCTTTTTTTGTGCAGATTTTTGATGAAGCTGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGCACCGTTGTTCAT-GGAACCATTACAGGTCACCCTCCCTATCTTTCTGTCTATTTCTTTGTTATCTATATTTAGGTATTTCCCTGTCAAGTCTAAAATGAACAATCTGAACGTATGTAATTGCTGAATTGCTCGCTCCAATAGGTAAATTAAGAATGTGCTTGTATAAAATTCATTTCCTGGGTTCACAAGTTTTTTGGTAGTGTCGCTAACTGAAAGTCTAGTTGCTGGGTGGTATATGGAAGTTGCTGAACTACAACAATAACATACTACCCAGTGTAATTCCACAAGTGGTGAGGTCTTGGGAGACAGAGTGTTTGCAAGCCTTACCCCTACCTCGTAGTGTTAAAGAGGCTGTTTCCAATAGATTCTCATGTTTAAATAAACCATTTCCAAACCATTTTTTAAATAAAGGATATATAAAAATAAGTGCTCATGACAGACAAGTGAGGTTTTGCTCAAGTAGTTGAGCACTTCCACCATCAACTAGTAGGTTGAGGGTTTGGGTCAGAGGATAGATGGGAACACTATTGATCCTTCTAGTCTCATGGGGGTGGGGTGGAAAAATGGAGCAACAACAACAACGAAAGCAAGTTGCTAAACTGTCTTTGGTTTATGCCACAAGTTAAGTTAGTTCATAGCGAATGTTAACTGCAATAGTTTACTTCACTCTCCTTCACTTCCACTGTGAGTAATTATGTATGTCCATAAATGCATGGAGCTAGGACTGAGAGGCTATAGAAAGTATACGAGGTAACTCGTCTCAATCTGTCTACTCCTCTCACTACCCTTCTGAATATGTCATCTTCTTATCCTCTCTGATTCACACGTATTATCTCTACTTCTGTCCTCCTTCAACTATGAAGTTCCTTTCAAATACCAACTGGAATTCATTCTCAAGTGCAGAGCTATTTCTGCCTATCATCACTGTAATTTATGTCTACACTCTAGAGCACCGTAGTTCCTCTCAGTTAATGCGTTAATTATACTCTGCCAATAAGAATAACATCTCTCATTCACTTTTTGTGGCTATAAAAATTGGATTATTACACAACTGAAGAATTTTGAAGTGTCACTATAATAATTCAACAATTCCTTCAATGAATTTGTATGCATTTAAATACAACTATGATGTCTCAATCCCAAACTAGTTGGTATGTCTATATTAGTGTCCTATATTTGTTCTGCTTTATTTGGACCATTTCATTAATTCACAGTTCGTTTACTTAAAATACAAATCTCTATATTGAAAAACAAAACAAACAAAAAAAAAAGAAATTATGGGAGTGAACATGGGATTCTTATCATCTTTTTGTCATTTTCTTAATATTTTTCATAAGTTAACTCCATAGATATATTCTTTGCCTTAAAACTTAAACTATGTTTGACTTTGGTGGAAGTGGCGGCGTTTGCGAATGGCTATGTTTAGCGTGGGGGGTGGAAGTGATAGTGTTTGCGAATGAGTGTGTTTAGCATGGGGGTTGAAGGGTAAGTCAGGGGTAAATTAGTAATTTGAATTTTAAGTTGGGAGTTGATGCTTTAAAGTAATATAGATAGATATAGACAACTACTTTATCATCTGCAAGAAAATCATACAGTAGCTTCTTTGTCTGGCAGTAGAGATGCCTTAGCAAACTTAGATAGGCTTCTTATGGCAAGTTGCATCGAAAATATCAAATTTTGCAAGGAAAATAGCCATATATGTATTGCAGAGTTTATCTCTGTTCTAGATAACTGTAGTAGTCAAAAGTAAAAATTTGTCCTGTTCTCATATTTTGAGACCTATAGCATTTCTCTTTTTCTGTTGGTTGTCCTTTCCATGCTTTTGACTGTTATTCCTTGAGGGGTTGCTTATACTTGCAGAAAATTGGTAGATATATTCGGGATATAGAAATATGTATTTGAGCATATCAGTATGTGTTTTGATATTAACTAGGCACAGCGGCTATTAAATCTGTCTCCTTATTGAAGTTGCTAGATTGAGAGCTGTGAGTTATAGCTTCTAAAGGCAGTTACATTTTTACAGGTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGGAAGAATCCAGTGACGCTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCT-GACAGCTTAAATCTTGAGACACTGCTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTGGTATTGTCATATTGTTAAGGACTATGTTGGGATTTTTTTGTGCCTTGTGGGTGTATGGCTAAATTTCCTTATTGCTTGGACATCCTTCTTATATACTCTTCCTTTGATTGTTCCTCTTCAGGAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGC-TGCTCTTAATTTTTGCAGTGTTGCCTATGTAAACATGTGT-ACGGATGGAGAGATTTGCTC--TTAGTTTTTCCCAGTAGAAAAAAGATGGATCTCATGC-ACAATTTATTTTGGATCTTTGAAGTCAGGAGCATGTTATCTCGTTGCA</genome_strand>
        <mrna_strand>GGTGTTTTCAATTTCTTCAGGCACAATGAAGCTCGTCAG.................................................................................ATTTTTGATGAAGCTGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGAACCGTTGTTCATGGGAACCATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGAAAGAATCCAGTGACGTTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGGACAGCTTAAATCTTGAGACGCTACTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTG.........................................................................................................................GAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATACATTCCAGCGTGCTCTAATATTTTGCAGTCTTGCCTATGTAAACATGTGTAACGGATTGAGAGATTTGCTCTTTTAGTTTTTCCCAGTAGAAAAAAGATGGATCTGATGCAACAATTTATTTTGGATC-TTGAAGTGAGGAGCATGTTATCTCGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465004" ref_strand="+" ref_description="SGN-E465004 [cPRO-19-F22]">
      <seq>caatttcttcagcacaatgaagctcgtcagatttttgatgaagtttaacaacgagactgtctcaattgagctcaaaaacggaaccgttgttcatggaaccattacaggtgtggatgttagcatgaacacacatctgaaggctgtcaaaattacgctaaaaggaaagaatccagtgacgttggatcacctgagtgtgaggggtaacaacatccgttattacatcctccctgacagcttaaatcttgagacgctactggtggaagaaacacctagggtgaagccaaagaagccaacagctggaaagccaatgggacgtggtcgtgggcgcggtcgtgggcgtggacgtggtcgaggccgctaaatgcattccagctgctctaattttttacagtcttgcctatgtaaacatatgtacggattgagagatttgctcttagtttttcccagtagaaaaaagatggatctgatgcaacaatttattttggatctttgaagtgaggagcatgttatctcgttgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100093" stop="96874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99897" g_stop="99867" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99866" i_stop="99786" i_length="81">
            <donor d_prob="0.346" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99785" g_stop="99709" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="107" r_length="77" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99708" i_stop="97711" i_length="1998">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97710" g_stop="97519" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="299" r_length="192" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97518" i_stop="97398" i_length="121">
            <donor d_prob="0.915" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97397" g_stop="97180" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="518" r_length="219" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="519" polyA_stop="528"/>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E465004" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99897" e_stop="99867"/>
          <exon e_start="99785" e_stop="99709"/>
          <exon e_start="97710" e_stop="97519"/>
          <exon e_start="97397" e_stop="97180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTCTTCAGCAACAATGAAGCTCGTTAGGTTCATGCGATATCTTCATCTTTTGAGTTTCTTTTCCAGTGTGCTTAGCAATGGATTTAACTTTTACCTTTTTTTGTGCAGATTTTTGATGAAGCTGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGCACCGTTGTTCATGGAACCATTACAGGTCACCCTCCCTATCTTTCTGTCTATTTCTTTGTTATCTATATTTAGGTATTTCCCTGTCAAGTCTAAAATGAACAATCTGAACGTATGTAATTGCTGAATTGCTCGCTCCAATAGGTAAATTAAGAATGTGCTTGTATAAAATTCATTTCCTGGGTTCACAAGTTTTTTGGTAGTGTCGCTAACTGAAAGTCTAGTTGCTGGGTGGTATATGGAAGTTGCTGAACTACAACAATAACATACTACCCAGTGTAATTCCACAAGTGGTGAGGTCTTGGGAGACAGAGTGTTTGCAAGCCTTACCCCTACCTCGTAGTGTTAAAGAGGCTGTTTCCAATAGATTCTCATGTTTAAATAAACCATTTCCAAACCATTTTTTAAATAAAGGATATATAAAAATAAGTGCTCATGACAGACAAGTGAGGTTTTGCTCAAGTAGTTGAGCACTTCCACCATCAACTAGTAGGTTGAGGGTTTGGGTCAGAGGATAGATGGGAACACTATTGATCCTTCTAGTCTCATGGGGGTGGGGTGGAAAAATGGAGCAACAACAACAACGAAAGCAAGTTGCTAAACTGTCTTTGGTTTATGCCACAAGTTAAGTTAGTTCATAGCGAATGTTAACTGCAATAGTTTACTTCACTCTCCTTCACTTCCACTGTGAGTAATTATGTATGTCCATAAATGCATGGAGCTAGGACTGAGAGGCTATAGAAAGTATACGAGGTAACTCGTCTCAATCTGTCTACTCCTCTCACTACCCTTCTGAATATGTCATCTTCTTATCCTCTCTGATTCACACGTATTATCTCTACTTCTGTCCTCCTTCAACTATGAAGTTCCTTTCAAATACCAACTGGAATTCATTCTCAAGTGCAGAGCTATTTCTGCCTATCATCACTGTAATTTATGTCTACACTCTAGAGCACCGTAGTTCCTCTCAGTTAATGCGTTAATTATACTCTGCCAATAAGAATAACATCTCTCATTCACTTTTTGTGGCTATAAAAATTGGATTATTACACAACTGAAGAATTTTGAAGTGTCACTATAATAATTCAACAATTCCTTCAATGAATTTGTATGCATTTAAATACAACTATGATGTCTCAATCCCAAACTAGTTGGTATGTCTATATTAGTGTCCTATATTTGTTCTGCTTTATTTGGACCATTTCATTAATTCACAGTTCGTTTACTTAAAATACAAATCTCTATATTGAAAAACAAAACAAACAAAAAAAAAAGAAATTATGGGAGTGAACATGGGATTCTTATCATCTTTTTGTCATTTTCTTAATATTTTTCATAAGTTAACTCCATAGATATATTCTTTGCCTTAAAACTTAAACTATGTTTGACTTTGGTGGAAGTGGCGGCGTTTGCGAATGGCTATGTTTAGCGTGGGGGGTGGAAGTGATAGTGTTTGCGAATGAGTGTGTTTAGCATGGGGGTTGAAGGGTAAGTCAGGGGTAAATTAGTAATTTGAATTTTAAGTTGGGAGTTGATGCTTTAAAGTAATATAGATAGATATAGACAACTACTTTATCATCTGCAAGAAAATCATACAGTAGCTTCTTTGTCTGGCAGTAGAGATGCCTTAGCAAACTTAGATAGGCTTCTTATGGCAAGTTGCATCGAAAATATCAAATTTTGCAAGGAAAATAGCCATATATGTATTGCAGAGTTTATCTCTGTTCTAGATAACTGTAGTAGTCAAAAGTAAAAATTTGTCCTGTTCTCATATTTTGAGACCTATAGCATTTCTCTTTTTCTGTTGGTTGTCCTTTCCATGCTTTTGACTGTTATTCCTTGAGGGGTTGCTTATACTTGCAGAAAATTGGTAGATATATTCGGGATATAGAAATATGTATTTGAGCATATCAGTATGTGTTTTGATATTAACTAGGCACAGCGGCTATTAAATCTGTCTCCTTATTGAAGTTGCTAGATTGAGAGCTGTGAGTTATAGCTTCTAAAGGCAGTTACATTTTTACAGGTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGGAAGAATCCAGTGACGCTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACACTGCTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTGGTATTGTCATATTGTTAAGGACTATGTTGGGATTTTTTTGTGCCTTGTGGGTGTATGGCTAAATTTCCTTATTGCTTGGACATCCTTCTTATATACTCTTCCTTTGATTGTTCCTCTTCAGGAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGCTGCTCTTAATTTTTGCAGTGTTGCCTATGTAAACATGTGTACGGATGGAGAGATTTGCTCTTAGTTTTTCCCAGTAGAAAAAAGATGGATCTCATGC-ACAATTTATTTTGGATCTTTGAAGTCAGGAGCATGTTATCTCGTTGC</genome_strand>
        <mrna_strand>CAATTTCTTCAGC-ACAATGAAGCTCGTCAG.................................................................................ATTTTTGATGAAGTTTAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGAACCGTTGTTCATGGAACCATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGAAAGAATCCAGTGACGTTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACGCTACTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTG.........................................................................................................................GAAAGCCAATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGCTGCTCTAATTTTTTACAGTCTTGCCTATGTAAACATATGTACGGATTGAGAGATTTGCTCTTAGTTTTTCCCAGTAGAAAAAAGATGGATCTGATGCAACAATTTATTTTGGATCTTTGAAGTGAGGAGCATGTTATCTCGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584350" ref_strand="+" ref_description="SGN-E584350 [10175]">
      <seq>ttttgatgaagctgaacaacgagactgtctcaattgagctcaaaaacggaaccgttgttcatggaaccattacaggtgtggatgttagcatgaacacacatctgaaggctgtcaaaattacgctaaaaggaaagaatccagtgacgttggatcacctgagtgtgaggggtaacaacatccgttattacatcctccctgacagcttaaatcttgagacgctactggtggaagaaacacctagggtgaagccaaagaagccaacagctggaaagcctatgggacgtggtcgtgggcgcggtcgtgggcgtggacgtggtcgaggccgctaaatacattccagctgctctaatattttgcagtcttgcctatgtaaacatgtgtacggattgagagatttgctcttttagtttttcccagtagaaaaaagatggatctgatgcaacaatttattttggatcttgaagtgaggagcatgttatctcggttgcatcaaaaaaacgcaaacgagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100083" stop="96874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99783" g_stop="99709" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99708" i_stop="97711" i_length="1998">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97710" g_stop="97519" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="267" r_length="192" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97518" i_stop="97398" i_length="121">
            <donor d_prob="0.915" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97397" g_stop="97185" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="482" r_length="215" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E584350" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E584350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99783" e_stop="99709"/>
          <exon e_start="97710" e_stop="97519"/>
          <exon e_start="97397" e_stop="97185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGATGAAGCTGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGCACCGTTGTTCATGGAACCATTACAGGTCACCCTCCCTATCTTTCTGTCTATTTCTTTGTTATCTATATTTAGGTATTTCCCTGTCAAGTCTAAAATGAACAATCTGAACGTATGTAATTGCTGAATTGCTCGCTCCAATAGGTAAATTAAGAATGTGCTTGTATAAAATTCATTTCCTGGGTTCACAAGTTTTTTGGTAGTGTCGCTAACTGAAAGTCTAGTTGCTGGGTGGTATATGGAAGTTGCTGAACTACAACAATAACATACTACCCAGTGTAATTCCACAAGTGGTGAGGTCTTGGGAGACAGAGTGTTTGCAAGCCTTACCCCTACCTCGTAGTGTTAAAGAGGCTGTTTCCAATAGATTCTCATGTTTAAATAAACCATTTCCAAACCATTTTTTAAATAAAGGATATATAAAAATAAGTGCTCATGACAGACAAGTGAGGTTTTGCTCAAGTAGTTGAGCACTTCCACCATCAACTAGTAGGTTGAGGGTTTGGGTCAGAGGATAGATGGGAACACTATTGATCCTTCTAGTCTCATGGGGGTGGGGTGGAAAAATGGAGCAACAACAACAACGAAAGCAAGTTGCTAAACTGTCTTTGGTTTATGCCACAAGTTAAGTTAGTTCATAGCGAATGTTAACTGCAATAGTTTACTTCACTCTCCTTCACTTCCACTGTGAGTAATTATGTATGTCCATAAATGCATGGAGCTAGGACTGAGAGGCTATAGAAAGTATACGAGGTAACTCGTCTCAATCTGTCTACTCCTCTCACTACCCTTCTGAATATGTCATCTTCTTATCCTCTCTGATTCACACGTATTATCTCTACTTCTGTCCTCCTTCAACTATGAAGTTCCTTTCAAATACCAACTGGAATTCATTCTCAAGTGCAGAGCTATTTCTGCCTATCATCACTGTAATTTATGTCTACACTCTAGAGCACCGTAGTTCCTCTCAGTTAATGCGTTAATTATACTCTGCCAATAAGAATAACATCTCTCATTCACTTTTTGTGGCTATAAAAATTGGATTATTACACAACTGAAGAATTTTGAAGTGTCACTATAATAATTCAACAATTCCTTCAATGAATTTGTATGCATTTAAATACAACTATGATGTCTCAATCCCAAACTAGTTGGTATGTCTATATTAGTGTCCTATATTTGTTCTGCTTTATTTGGACCATTTCATTAATTCACAGTTCGTTTACTTAAAATACAAATCTCTATATTGAAAAACAAAACAAACAAAAAAAAAAGAAATTATGGGAGTGAACATGGGATTCTTATCATCTTTTTGTCATTTTCTTAATATTTTTCATAAGTTAACTCCATAGATATATTCTTTGCCTTAAAACTTAAACTATGTTTGACTTTGGTGGAAGTGGCGGCGTTTGCGAATGGCTATGTTTAGCGTGGGGGGTGGAAGTGATAGTGTTTGCGAATGAGTGTGTTTAGCATGGGGGTTGAAGGGTAAGTCAGGGGTAAATTAGTAATTTGAATTTTAAGTTGGGAGTTGATGCTTTAAAGTAATATAGATAGATATAGACAACTACTTTATCATCTGCAAGAAAATCATACAGTAGCTTCTTTGTCTGGCAGTAGAGATGCCTTAGCAAACTTAGATAGGCTTCTTATGGCAAGTTGCATCGAAAATATCAAATTTTGCAAGGAAAATAGCCATATATGTATTGCAGAGTTTATCTCTGTTCTAGATAACTGTAGTAGTCAAAAGTAAAAATTTGTCCTGTTCTCATATTTTGAGACCTATAGCATTTCTCTTTTTCTGTTGGTTGTCCTTTCCATGCTTTTGACTGTTATTCCTTGAGGGGTTGCTTATACTTGCAGAAAATTGGTAGATATATTCGGGATATAGAAATATGTATTTGAGCATATCAGTATGTGTTTTGATATTAACTAGGCACAGCGGCTATTAAATCTGTCTCCTTATTGAAGTTGCTAGATTGAGAGCTGTGAGTTATAGCTTCTAAAGGCAGTTACATTTTTACAGGTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGGAAGAATCCAGTGACGCTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACACTGCTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTGGTATTGTCATATTGTTAAGGACTATGTTGGGATTTTTTTGTGCCTTGTGGGTGTATGGCTAAATTTCCTTATTGCTTGGACATCCTTCTTATATACTCTTCCTTTGATTGTTCCTCTTCAGGAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGCTGCTCTTAATTTTTGCAGTGTTGCCTATGTAAACATGTGTACGGATGGAGAGATTTGCTC--TTAGTTTTTCCCAGTAGAAAAAAGATGGATCTCATGC-ACAATTTATTTTGGATCTTTGAAGTCAGGAGCATGTTATCTC</genome_strand>
        <mrna_strand>TTTTGATGAAGCTGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGAACCGTTGTTCATGGAACCATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGAAAGAATCCAGTGACGTTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACGCTACTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTG.........................................................................................................................GAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATACATTCCAGCTGCTCTAATATTTTGCAGTCTTGCCTATGTAAACATGTGTACGGATTGAGAGATTTGCTCTTTTAGTTTTTCCCAGTAGAAAAAAGATGGATCTGATGCAACAATTTATTTTGGATC-TTGAAGTGAGGAGCATGTTATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349805" ref_strand="+" ref_description="SGN-E349805 [cTOS-3-N20]">
      <seq>cttgccctaaactaaagccctagattagtgtgttttcaatttcttcagcaagcaacaatgaagctcgtcagatttttgatgaagctgaacaacgagactgtctcaattgagctcaaaaacggcaccgttgttcatggaaccattacaggtgtggatgttagcatgaacacacatctgaaggctgtcaaaattacgctaaaagggaagaatccagtgacgttggatcacctaagtgtgaggggtaacaacatccgttattacatcctccctgacagcttaaatcttgagacgttactggtggaagaaacacctagggtgaagccaaagaagccaacagctggaaagcctatgggacgtggtcgtgggcgcggtcgtgggcgtggacgtggtcgaggccgctaaatgcattccagttggtctatttttttgcagtcttgcctatgtaaacatgtgtacggattgatagatttgctcttagtttttatcctgtagaaaaaagatggatctcatgcaacaatttattttggatctttgaagtcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100208" stop="96955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99885" g_stop="99867" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="71" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99866" i_stop="99786" i_length="81">
            <donor d_prob="0.346" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99785" g_stop="99709" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="148" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99708" i_stop="97711" i_length="1998">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97710" g_stop="97519" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="340" r_length="192" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97518" i_stop="97398" i_length="121">
            <donor d_prob="0.915" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97397" g_stop="97189" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="551" r_length="211" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E349805" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99885" e_stop="99867"/>
          <exon e_start="99785" e_stop="99709"/>
          <exon e_start="97710" e_stop="97519"/>
          <exon e_start="97397" e_stop="97189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATGAAGCTCGTTAGGTTCATGCGATATCTTCATCTTTTGAGTTTCTTTTCCAGTGTGCTTAGCAATGGATTTAACTTTTACCTTTTTTTGTGCAGATTTTTGATGAAGCTGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGCACCGTTGTTCATGGAACCATTACAGGTCACCCTCCCTATCTTTCTGTCTATTTCTTTGTTATCTATATTTAGGTATTTCCCTGTCAAGTCTAAAATGAACAATCTGAACGTATGTAATTGCTGAATTGCTCGCTCCAATAGGTAAATTAAGAATGTGCTTGTATAAAATTCATTTCCTGGGTTCACAAGTTTTTTGGTAGTGTCGCTAACTGAAAGTCTAGTTGCTGGGTGGTATATGGAAGTTGCTGAACTACAACAATAACATACTACCCAGTGTAATTCCACAAGTGGTGAGGTCTTGGGAGACAGAGTGTTTGCAAGCCTTACCCCTACCTCGTAGTGTTAAAGAGGCTGTTTCCAATAGATTCTCATGTTTAAATAAACCATTTCCAAACCATTTTTTAAATAAAGGATATATAAAAATAAGTGCTCATGACAGACAAGTGAGGTTTTGCTCAAGTAGTTGAGCACTTCCACCATCAACTAGTAGGTTGAGGGTTTGGGTCAGAGGATAGATGGGAACACTATTGATCCTTCTAGTCTCATGGGGGTGGGGTGGAAAAATGGAGCAACAACAACAACGAAAGCAAGTTGCTAAACTGTCTTTGGTTTATGCCACAAGTTAAGTTAGTTCATAGCGAATGTTAACTGCAATAGTTTACTTCACTCTCCTTCACTTCCACTGTGAGTAATTATGTATGTCCATAAATGCATGGAGCTAGGACTGAGAGGCTATAGAAAGTATACGAGGTAACTCGTCTCAATCTGTCTACTCCTCTCACTACCCTTCTGAATATGTCATCTTCTTATCCTCTCTGATTCACACGTATTATCTCTACTTCTGTCCTCCTTCAACTATGAAGTTCCTTTCAAATACCAACTGGAATTCATTCTCAAGTGCAGAGCTATTTCTGCCTATCATCACTGTAATTTATGTCTACACTCTAGAGCACCGTAGTTCCTCTCAGTTAATGCGTTAATTATACTCTGCCAATAAGAATAACATCTCTCATTCACTTTTTGTGGCTATAAAAATTGGATTATTACACAACTGAAGAATTTTGAAGTGTCACTATAATAATTCAACAATTCCTTCAATGAATTTGTATGCATTTAAATACAACTATGATGTCTCAATCCCAAACTAGTTGGTATGTCTATATTAGTGTCCTATATTTGTTCTGCTTTATTTGGACCATTTCATTAATTCACAGTTCGTTTACTTAAAATACAAATCTCTATATTGAAAAACAAAACAAACAAAAAAAAAAGAAATTATGGGAGTGAACATGGGATTCTTATCATCTTTTTGTCATTTTCTTAATATTTTTCATAAGTTAACTCCATAGATATATTCTTTGCCTTAAAACTTAAACTATGTTTGACTTTGGTGGAAGTGGCGGCGTTTGCGAATGGCTATGTTTAGCGTGGGGGGTGGAAGTGATAGTGTTTGCGAATGAGTGTGTTTAGCATGGGGGTTGAAGGGTAAGTCAGGGGTAAATTAGTAATTTGAATTTTAAGTTGGGAGTTGATGCTTTAAAGTAATATAGATAGATATAGACAACTACTTTATCATCTGCAAGAAAATCATACAGTAGCTTCTTTGTCTGGCAGTAGAGATGCCTTAGCAAACTTAGATAGGCTTCTTATGGCAAGTTGCATCGAAAATATCAAATTTTGCAAGGAAAATAGCCATATATGTATTGCAGAGTTTATCTCTGTTCTAGATAACTGTAGTAGTCAAAAGTAAAAATTTGTCCTGTTCTCATATTTTGAGACCTATAGCATTTCTCTTTTTCTGTTGGTTGTCCTTTCCATGCTTTTGACTGTTATTCCTTGAGGGGTTGCTTATACTTGCAGAAAATTGGTAGATATATTCGGGATATAGAAATATGTATTTGAGCATATCAGTATGTGTTTTGATATTAACTAGGCACAGCGGCTATTAAATCTGTCTCCTTATTGAAGTTGCTAGATTGAGAGCTGTGAGTTATAGCTTCTAAAGGCAGTTACATTTTTACAGGTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGGAAGAATCCAGTGACGCTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACACTGCTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTGGTATTGTCATATTGTTAAGGACTATGTTGGGATTTTTTTGTGCCTTGTGGGTGTATGGCTAAATTTCCTTATTGCTTGGACATCCTTCTTATATACTCTTCCTTTGATTGTTCCTCTTCAGGAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGCTGCTCTTAATTTTTGCAGTGTTGCCTATGTAAACATGTGTACGGATGGAGAGATTTGCTCTTAGTTTTT-CCCAGTAGAAAAAAGATGGATCTCATGC-ACAATTTATTTTGGATCTTTGAAGTCAGGAGCATGTTA</genome_strand>
        <mrna_strand>CAACAATGAAGCTCGTCAG.................................................................................ATTTTTGATGAAGCTGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGCACCGTTGTTCATGGAACCATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGGAAGAATCCAGTGACGTTGGATCACCTAAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACGTTACTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTG.........................................................................................................................GAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGTTGGTCTATTTTTTTGCAGTCTTGCCTATGTAAACATGTGTACGGATTGATAGATTTGCTCTTAGTTTTTATCCTGTAGAAAAAAGATGGATCTCATGCAACAATTTATTTTGGATCTTTGAAGTCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E566618" ref_strand="+" ref_description="SGN-E566618 [5057]">
      <seq>ctactctgctgtgttttcaatttcttcagcacaatgaagctcgtcagatttttgatgaagctgaacaacgagactgtctcaattgagctcaaaaacggaaccgttgttcatggaaccattacaggtgtggatgttagcatgaacacacatctgaaggctgtcaaaattacgctaaaaggaaagaatccagtgacgttggatcacctgagtgtgaggggtaacaacatccgttattacatcctccctggacagcttaaatcttgagacgctactggtggaagaaacacctnaggtgaagccaaagaagccaacagctggaaagcctatgggacgtggtcgtgggcgcggtcgtgggcgtggacgtggtcgaggccgctaaatgcaattccagctgctctaatattttgcagtcttggcctatgtaaacatgtgtacggattgagagatttgctcttagtttttcccagtagaaaaaagatggatctgatgcaacaatttattttggatcttgaagtgaggagcatgttaaaaaacaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100211" stop="96889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99914" g_stop="99867" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.771"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99866" i_stop="99786" i_length="81">
            <donor d_prob="0.346" d_score="0.77"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99785" g_stop="99709" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="124" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99708" i_stop="97711" i_length="1998">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97710" g_stop="97519" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="317" r_length="193" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97518" i_stop="97398" i_length="121">
            <donor d_prob="0.915" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97397" g_stop="97190" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="527" r_length="210" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="528" polyA_stop="540"/>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E566618" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E566618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99914" e_stop="99867"/>
          <exon e_start="99785" e_stop="99709"/>
          <exon e_start="97710" e_stop="97519"/>
          <exon e_start="97397" e_stop="97190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCCTAGCGTCTCTTCAATTTCTTCAGCAACAATGAAGCTCGTTAGGTTCATGCGATATCTTCATCTTTTGAGTTTCTTTTCCAGTGTGCTTAGCAATGGATTTAACTTTTACCTTTTTTTGTGCAGATTTTTGATGAAGCTGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGCACCGTTGTTCATGGAACCATTACAGGTCACCCTCCCTATCTTTCTGTCTATTTCTTTGTTATCTATATTTAGGTATTTCCCTGTCAAGTCTAAAATGAACAATCTGAACGTATGTAATTGCTGAATTGCTCGCTCCAATAGGTAAATTAAGAATGTGCTTGTATAAAATTCATTTCCTGGGTTCACAAGTTTTTTGGTAGTGTCGCTAACTGAAAGTCTAGTTGCTGGGTGGTATATGGAAGTTGCTGAACTACAACAATAACATACTACCCAGTGTAATTCCACAAGTGGTGAGGTCTTGGGAGACAGAGTGTTTGCAAGCCTTACCCCTACCTCGTAGTGTTAAAGAGGCTGTTTCCAATAGATTCTCATGTTTAAATAAACCATTTCCAAACCATTTTTTAAATAAAGGATATATAAAAATAAGTGCTCATGACAGACAAGTGAGGTTTTGCTCAAGTAGTTGAGCACTTCCACCATCAACTAGTAGGTTGAGGGTTTGGGTCAGAGGATAGATGGGAACACTATTGATCCTTCTAGTCTCATGGGGGTGGGGTGGAAAAATGGAGCAACAACAACAACGAAAGCAAGTTGCTAAACTGTCTTTGGTTTATGCCACAAGTTAAGTTAGTTCATAGCGAATGTTAACTGCAATAGTTTACTTCACTCTCCTTCACTTCCACTGTGAGTAATTATGTATGTCCATAAATGCATGGAGCTAGGACTGAGAGGCTATAGAAAGTATACGAGGTAACTCGTCTCAATCTGTCTACTCCTCTCACTACCCTTCTGAATATGTCATCTTCTTATCCTCTCTGATTCACACGTATTATCTCTACTTCTGTCCTCCTTCAACTATGAAGTTCCTTTCAAATACCAACTGGAATTCATTCTCAAGTGCAGAGCTATTTCTGCCTATCATCACTGTAATTTATGTCTACACTCTAGAGCACCGTAGTTCCTCTCAGTTAATGCGTTAATTATACTCTGCCAATAAGAATAACATCTCTCATTCACTTTTTGTGGCTATAAAAATTGGATTATTACACAACTGAAGAATTTTGAAGTGTCACTATAATAATTCAACAATTCCTTCAATGAATTTGTATGCATTTAAATACAACTATGATGTCTCAATCCCAAACTAGTTGGTATGTCTATATTAGTGTCCTATATTTGTTCTGCTTTATTTGGACCATTTCATTAATTCACAGTTCGTTTACTTAAAATACAAATCTCTATATTGAAAAACAAAACAAACAAAAAAAAAAGAAATTATGGGAGTGAACATGGGATTCTTATCATCTTTTTGTCATTTTCTTAATATTTTTCATAAGTTAACTCCATAGATATATTCTTTGCCTTAAAACTTAAACTATGTTTGACTTTGGTGGAAGTGGCGGCGTTTGCGAATGGCTATGTTTAGCGTGGGGGGTGGAAGTGATAGTGTTTGCGAATGAGTGTGTTTAGCATGGGGGTTGAAGGGTAAGTCAGGGGTAAATTAGTAATTTGAATTTTAAGTTGGGAGTTGATGCTTTAAAGTAATATAGATAGATATAGACAACTACTTTATCATCTGCAAGAAAATCATACAGTAGCTTCTTTGTCTGGCAGTAGAGATGCCTTAGCAAACTTAGATAGGCTTCTTATGGCAAGTTGCATCGAAAATATCAAATTTTGCAAGGAAAATAGCCATATATGTATTGCAGAGTTTATCTCTGTTCTAGATAACTGTAGTAGTCAAAAGTAAAAATTTGTCCTGTTCTCATATTTTGAGACCTATAGCATTTCTCTTTTTCTGTTGGTTGTCCTTTCCATGCTTTTGACTGTTATTCCTTGAGGGGTTGCTTATACTTGCAGAAAATTGGTAGATATATTCGGGATATAGAAATATGTATTTGAGCATATCAGTATGTGTTTTGATATTAACTAGGCACAGCGGCTATTAAATCTGTCTCCTTATTGAAGTTGCTAGATTGAGAGCTGTGAGTTATAGCTTCTAAAGGCAGTTACATTTTTACAGGTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGGAAGAATCCAGTGACGCTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCT-GACAGCTTAAATCTTGAGACACTGCTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTGGTATTGTCATATTGTTAAGGACTATGTTGGGATTTTTTTGTGCCTTGTGGGTGTATGGCTAAATTTCCTTATTGCTTGGACATCCTTCTTATATACTCTTCCTTTGATTGTTCCTCTTCAGGAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGC-ATTCCAGCTGCTCTTAATTTTTGCAGTGTT-GCCTATGTAAACATGTGTACGGATGGAGAGATTTGCTCTTAGTTTTTCCCAGTAGAAAAAAGATGGATCTCATGC-ACAATTTATTTTGGATCTTTGAAGTCAGGAGCATGTT</genome_strand>
        <mrna_strand>CTACTCTGCTGTGTTTTCAATTTCTTCAGCA-CAATGAAGCTCGTCAG.................................................................................ATTTTTGATGAAGCTGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGAACCGTTGTTCATGGAACCATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGAAAGAATCCAGTGACGTTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGGACAGCTTAAATCTTGAGACGCTACTGGTGGAAGAAACACCTNAGGTGAAGCCAAAGAAGCCAACAGCTG.........................................................................................................................GAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCAATTCCAGCTGCTCTAATATTTTGCAGTCTTGGCCTATGTAAACATGTGTACGGATTGAGAGATTTGCTCTTAGTTTTTCCCAGTAGAAAAAAGATGGATCTGATGCAACAATTTATTTTGGATC-TTGAAGTGAGGAGCATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717214" ref_strand="+" ref_description="SGN-E717214 [FB19BH03]">
      <seq>ccttgccctaaactaaagccctagattagtgtgttttcaatttcttcagcaagcaacaatgaagctcgtcagatttttgatgaagctgaacaacgagactgtctcaattgagctcaaaaacggcaccgttgttcatggaaccattacaggtgtggatgttagcatgaacacacatctgaaggctgtcaaaattacgctaaaaggaaagaatccagtgacattggatcacctgagtgtgaggggtaacaacatccgttattacatcctccctgacagcttaaatcttgagacgttactggtggaagaaacacctagggtgaagccaaagaagccaacagctggaaagcctatgggacgtggtcgtgggcgcggtcgtgggcgtggacgtggtcgaggccgctaaatgcattccggctggtctatttttttgcagtcttgcctatgtaaacatgtgtacggattgatagatttgctgttagtttttatcctgtagaaaaaagatggatctcatgcaacaatttattttggatctttgaagtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100208" stop="96955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99885" g_stop="99867" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="72" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99866" i_stop="99786" i_length="81">
            <donor d_prob="0.346" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99785" g_stop="99709" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="149" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99708" i_stop="97711" i_length="1998">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97710" g_stop="97519" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="341" r_length="192" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97518" i_stop="97398" i_length="121">
            <donor d_prob="0.915" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97397" g_stop="97191" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="550" r_length="209" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E717214" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99885" e_stop="99867"/>
          <exon e_start="99785" e_stop="99709"/>
          <exon e_start="97710" e_stop="97519"/>
          <exon e_start="97397" e_stop="97191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATGAAGCTCGTTAGGTTCATGCGATATCTTCATCTTTTGAGTTTCTTTTCCAGTGTGCTTAGCAATGGATTTAACTTTTACCTTTTTTTGTGCAGATTTTTGATGAAGCTGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGCACCGTTGTTCATGGAACCATTACAGGTCACCCTCCCTATCTTTCTGTCTATTTCTTTGTTATCTATATTTAGGTATTTCCCTGTCAAGTCTAAAATGAACAATCTGAACGTATGTAATTGCTGAATTGCTCGCTCCAATAGGTAAATTAAGAATGTGCTTGTATAAAATTCATTTCCTGGGTTCACAAGTTTTTTGGTAGTGTCGCTAACTGAAAGTCTAGTTGCTGGGTGGTATATGGAAGTTGCTGAACTACAACAATAACATACTACCCAGTGTAATTCCACAAGTGGTGAGGTCTTGGGAGACAGAGTGTTTGCAAGCCTTACCCCTACCTCGTAGTGTTAAAGAGGCTGTTTCCAATAGATTCTCATGTTTAAATAAACCATTTCCAAACCATTTTTTAAATAAAGGATATATAAAAATAAGTGCTCATGACAGACAAGTGAGGTTTTGCTCAAGTAGTTGAGCACTTCCACCATCAACTAGTAGGTTGAGGGTTTGGGTCAGAGGATAGATGGGAACACTATTGATCCTTCTAGTCTCATGGGGGTGGGGTGGAAAAATGGAGCAACAACAACAACGAAAGCAAGTTGCTAAACTGTCTTTGGTTTATGCCACAAGTTAAGTTAGTTCATAGCGAATGTTAACTGCAATAGTTTACTTCACTCTCCTTCACTTCCACTGTGAGTAATTATGTATGTCCATAAATGCATGGAGCTAGGACTGAGAGGCTATAGAAAGTATACGAGGTAACTCGTCTCAATCTGTCTACTCCTCTCACTACCCTTCTGAATATGTCATCTTCTTATCCTCTCTGATTCACACGTATTATCTCTACTTCTGTCCTCCTTCAACTATGAAGTTCCTTTCAAATACCAACTGGAATTCATTCTCAAGTGCAGAGCTATTTCTGCCTATCATCACTGTAATTTATGTCTACACTCTAGAGCACCGTAGTTCCTCTCAGTTAATGCGTTAATTATACTCTGCCAATAAGAATAACATCTCTCATTCACTTTTTGTGGCTATAAAAATTGGATTATTACACAACTGAAGAATTTTGAAGTGTCACTATAATAATTCAACAATTCCTTCAATGAATTTGTATGCATTTAAATACAACTATGATGTCTCAATCCCAAACTAGTTGGTATGTCTATATTAGTGTCCTATATTTGTTCTGCTTTATTTGGACCATTTCATTAATTCACAGTTCGTTTACTTAAAATACAAATCTCTATATTGAAAAACAAAACAAACAAAAAAAAAAGAAATTATGGGAGTGAACATGGGATTCTTATCATCTTTTTGTCATTTTCTTAATATTTTTCATAAGTTAACTCCATAGATATATTCTTTGCCTTAAAACTTAAACTATGTTTGACTTTGGTGGAAGTGGCGGCGTTTGCGAATGGCTATGTTTAGCGTGGGGGGTGGAAGTGATAGTGTTTGCGAATGAGTGTGTTTAGCATGGGGGTTGAAGGGTAAGTCAGGGGTAAATTAGTAATTTGAATTTTAAGTTGGGAGTTGATGCTTTAAAGTAATATAGATAGATATAGACAACTACTTTATCATCTGCAAGAAAATCATACAGTAGCTTCTTTGTCTGGCAGTAGAGATGCCTTAGCAAACTTAGATAGGCTTCTTATGGCAAGTTGCATCGAAAATATCAAATTTTGCAAGGAAAATAGCCATATATGTATTGCAGAGTTTATCTCTGTTCTAGATAACTGTAGTAGTCAAAAGTAAAAATTTGTCCTGTTCTCATATTTTGAGACCTATAGCATTTCTCTTTTTCTGTTGGTTGTCCTTTCCATGCTTTTGACTGTTATTCCTTGAGGGGTTGCTTATACTTGCAGAAAATTGGTAGATATATTCGGGATATAGAAATATGTATTTGAGCATATCAGTATGTGTTTTGATATTAACTAGGCACAGCGGCTATTAAATCTGTCTCCTTATTGAAGTTGCTAGATTGAGAGCTGTGAGTTATAGCTTCTAAAGGCAGTTACATTTTTACAGGTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGGAAGAATCCAGTGACGCTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACACTGCTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTGGTATTGTCATATTGTTAAGGACTATGTTGGGATTTTTTTGTGCCTTGTGGGTGTATGGCTAAATTTCCTTATTGCTTGGACATCCTTCTTATATACTCTTCCTTTGATTGTTCCTCTTCAGGAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGCTGCTCTTAATTTTTGCAGTGTTGCCTATGTAAACATGTGTACGGATGGAGAGATTTGCTCTTAGTTTTT-CCCAGTAGAAAAAAGATGGATCTCATGC-ACAATTTATTTTGGATCTTTGAAGTCAGGAGCATGT</genome_strand>
        <mrna_strand>CAACAATGAAGCTCGTCAG.................................................................................ATTTTTGATGAAGCTGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGCACCGTTGTTCATGGAACCATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGAAAGAATCCAGTGACATTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACGTTACTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTG.........................................................................................................................GAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCGGCTGGTCTATTTTTTTGCAGTCTTGCCTATGTAAACATGTGTACGGATTGATAGATTTGCTGTTAGTTTTTATCCTGTAGAAAAAAGATGGATCTCATGCAACAATTTATTTTGGATCTTTGAAGTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E593806" ref_strand="-" ref_description="SGN-E593806 [37044]">
      <seq>cggcgctccttgccctaaaccctacgctgctgtgttttcaatttcttcagcacaatgaagctcgtcagatttttgatgaagctgaacaacgagactgtctcaattgagctcaaaaacggaaccgttgttcatggaaccattacaggtgtggatgttagcatgaacacacatctgaaggctgtcaaaattacgctaaaaggaaagaatccagtgacgttggatcacctgagtgtgaggggtaacaacatccgttattacatcctccctgacagcttaaatcttgagacgctactggtggaagaaacacctagggtgaagccaaagaagccaacagctggaaagccaatgggacgtggtcgtgggcgcggtcgtgggcgtggacgtggtcgaggccgctaaatgcattccagctgctctaattttttacagtcttgcctatgtaaacatatgtacggattgagagatttgctcttagtttttcccagtagaaaaaagatggatctgatgcaacaatttattttggatctttgaagtgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100232" stop="96900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99905" g_stop="99867" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="68" r_length="38" r_score="0.872"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99866" i_stop="99786" i_length="81">
            <donor d_prob="0.346" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99785" g_stop="99709" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="145" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99708" i_stop="97711" i_length="1998">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97710" g_stop="97519" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="337" r_length="192" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97518" i_stop="97398" i_length="121">
            <donor d_prob="0.915" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97397" g_stop="97204" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="532" r_length="195" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="536" polyA_stop="550"/>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E593806" ref_strand="-">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E593806" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="99905" e_stop="99867"/>
          <exon e_start="99785" e_stop="99709"/>
          <exon e_start="97710" e_stop="97519"/>
          <exon e_start="97397" e_stop="97204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCTCTTCAATTTCTTCAGCAACAATGAAGCTCGTTAGGTTCATGCGATATCTTCATCTTTTGAGTTTCTTTTCCAGTGTGCTTAGCAATGGATTTAACTTTTACCTTTTTTTGTGCAGATTTTTGATGAAGCTGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGCACCGTTGTTCATGGAACCATTACAGGTCACCCTCCCTATCTTTCTGTCTATTTCTTTGTTATCTATATTTAGGTATTTCCCTGTCAAGTCTAAAATGAACAATCTGAACGTATGTAATTGCTGAATTGCTCGCTCCAATAGGTAAATTAAGAATGTGCTTGTATAAAATTCATTTCCTGGGTTCACAAGTTTTTTGGTAGTGTCGCTAACTGAAAGTCTAGTTGCTGGGTGGTATATGGAAGTTGCTGAACTACAACAATAACATACTACCCAGTGTAATTCCACAAGTGGTGAGGTCTTGGGAGACAGAGTGTTTGCAAGCCTTACCCCTACCTCGTAGTGTTAAAGAGGCTGTTTCCAATAGATTCTCATGTTTAAATAAACCATTTCCAAACCATTTTTTAAATAAAGGATATATAAAAATAAGTGCTCATGACAGACAAGTGAGGTTTTGCTCAAGTAGTTGAGCACTTCCACCATCAACTAGTAGGTTGAGGGTTTGGGTCAGAGGATAGATGGGAACACTATTGATCCTTCTAGTCTCATGGGGGTGGGGTGGAAAAATGGAGCAACAACAACAACGAAAGCAAGTTGCTAAACTGTCTTTGGTTTATGCCACAAGTTAAGTTAGTTCATAGCGAATGTTAACTGCAATAGTTTACTTCACTCTCCTTCACTTCCACTGTGAGTAATTATGTATGTCCATAAATGCATGGAGCTAGGACTGAGAGGCTATAGAAAGTATACGAGGTAACTCGTCTCAATCTGTCTACTCCTCTCACTACCCTTCTGAATATGTCATCTTCTTATCCTCTCTGATTCACACGTATTATCTCTACTTCTGTCCTCCTTCAACTATGAAGTTCCTTTCAAATACCAACTGGAATTCATTCTCAAGTGCAGAGCTATTTCTGCCTATCATCACTGTAATTTATGTCTACACTCTAGAGCACCGTAGTTCCTCTCAGTTAATGCGTTAATTATACTCTGCCAATAAGAATAACATCTCTCATTCACTTTTTGTGGCTATAAAAATTGGATTATTACACAACTGAAGAATTTTGAAGTGTCACTATAATAATTCAACAATTCCTTCAATGAATTTGTATGCATTTAAATACAACTATGATGTCTCAATCCCAAACTAGTTGGTATGTCTATATTAGTGTCCTATATTTGTTCTGCTTTATTTGGACCATTTCATTAATTCACAGTTCGTTTACTTAAAATACAAATCTCTATATTGAAAAACAAAACAAACAAAAAAAAAAGAAATTATGGGAGTGAACATGGGATTCTTATCATCTTTTTGTCATTTTCTTAATATTTTTCATAAGTTAACTCCATAGATATATTCTTTGCCTTAAAACTTAAACTATGTTTGACTTTGGTGGAAGTGGCGGCGTTTGCGAATGGCTATGTTTAGCGTGGGGGGTGGAAGTGATAGTGTTTGCGAATGAGTGTGTTTAGCATGGGGGTTGAAGGGTAAGTCAGGGGTAAATTAGTAATTTGAATTTTAAGTTGGGAGTTGATGCTTTAAAGTAATATAGATAGATATAGACAACTACTTTATCATCTGCAAGAAAATCATACAGTAGCTTCTTTGTCTGGCAGTAGAGATGCCTTAGCAAACTTAGATAGGCTTCTTATGGCAAGTTGCATCGAAAATATCAAATTTTGCAAGGAAAATAGCCATATATGTATTGCAGAGTTTATCTCTGTTCTAGATAACTGTAGTAGTCAAAAGTAAAAATTTGTCCTGTTCTCATATTTTGAGACCTATAGCATTTCTCTTTTTCTGTTGGTTGTCCTTTCCATGCTTTTGACTGTTATTCCTTGAGGGGTTGCTTATACTTGCAGAAAATTGGTAGATATATTCGGGATATAGAAATATGTATTTGAGCATATCAGTATGTGTTTTGATATTAACTAGGCACAGCGGCTATTAAATCTGTCTCCTTATTGAAGTTGCTAGATTGAGAGCTGTGAGTTATAGCTTCTAAAGGCAGTTACATTTTTACAGGTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGGAAGAATCCAGTGACGCTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACACTGCTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTGGTATTGTCATATTGTTAAGGACTATGTTGGGATTTTTTTGTGCCTTGTGGGTGTATGGCTAAATTTCCTTATTGCTTGGACATCCTTCTTATATACTCTTCCTTTGATTGTTCCTCTTCAGGAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGCTGCTCTTAATTTTTGCAGTGTTGCCTATGTAAACATGTGTACGGATGGAGAGATTTGCTCTTAGTTTTTCCCAGTAGAAAAAAGATGGATCTCATGC-ACAATTTATTTTGGATCTTTGAA</genome_strand>
        <mrna_strand>TGTGTTTTCAATTTCTTCAGCA-CAATGAAGCTCGTCAG.................................................................................ATTTTTGATGAAGCTGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGAACCGTTGTTCATGGAACCATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGAAAGAATCCAGTGACGTTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACGCTACTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTG.........................................................................................................................GAAAGCCAATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGCTGCTCTAATTTTTTACAGTCTTGCCTATGTAAACATATGTACGGATTGAGAGATTTGCTCTTAGTTTTTCCCAGTAGAAAAAAGATGGATCTGATGCAACAATTTATTTTGGATCTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460692" ref_strand="+" ref_description="SGN-E460692 [cPRO-32-G7]">
      <seq>gcgctccttgccctaaaccctacgctgctgtgttttcaatttcttcagcacaatgaagctcgtcagatttttgatgaagctgaacaacgagactgtctcaattgagctcaaaaacggaaccgttgttcatggaaccattacaggtgtggatgttagcatgaacacacatctgaaggctgtcaaaattacgctaaaaggaaagaatccagtgacgttggatcacctgagtgtgaggggtaacaacatccgttattacatcctccctgacagcttaaatcttgagacgctactggtggaagaaacacctagggtgaagccaaagaagccaacagctggaaagccaatgggacgtggtcgtgggcgcggtcgtgggcgtggacgtggtcgaggccgctaaatgcattccagctgctctaattttttacagtcttgcctatgtaaacatatgtacggattgagagatttgctcttagtttttcccagtagaaaaaagatggatctgatgcaacaatttattttggatctttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100232" stop="96904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99905" g_stop="99867" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="66" r_length="38" r_score="0.872"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99866" i_stop="99786" i_length="81">
            <donor d_prob="0.346" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99785" g_stop="99709" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="143" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99708" i_stop="97711" i_length="1998">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97710" g_stop="97519" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="335" r_length="192" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97518" i_stop="97398" i_length="121">
            <donor d_prob="0.915" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97397" g_stop="97204" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="530" r_length="195" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E460692" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99905" e_stop="99867"/>
          <exon e_start="99785" e_stop="99709"/>
          <exon e_start="97710" e_stop="97519"/>
          <exon e_start="97397" e_stop="97204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCTCTTCAATTTCTTCAGCAACAATGAAGCTCGTTAGGTTCATGCGATATCTTCATCTTTTGAGTTTCTTTTCCAGTGTGCTTAGCAATGGATTTAACTTTTACCTTTTTTTGTGCAGATTTTTGATGAAGCTGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGCACCGTTGTTCATGGAACCATTACAGGTCACCCTCCCTATCTTTCTGTCTATTTCTTTGTTATCTATATTTAGGTATTTCCCTGTCAAGTCTAAAATGAACAATCTGAACGTATGTAATTGCTGAATTGCTCGCTCCAATAGGTAAATTAAGAATGTGCTTGTATAAAATTCATTTCCTGGGTTCACAAGTTTTTTGGTAGTGTCGCTAACTGAAAGTCTAGTTGCTGGGTGGTATATGGAAGTTGCTGAACTACAACAATAACATACTACCCAGTGTAATTCCACAAGTGGTGAGGTCTTGGGAGACAGAGTGTTTGCAAGCCTTACCCCTACCTCGTAGTGTTAAAGAGGCTGTTTCCAATAGATTCTCATGTTTAAATAAACCATTTCCAAACCATTTTTTAAATAAAGGATATATAAAAATAAGTGCTCATGACAGACAAGTGAGGTTTTGCTCAAGTAGTTGAGCACTTCCACCATCAACTAGTAGGTTGAGGGTTTGGGTCAGAGGATAGATGGGAACACTATTGATCCTTCTAGTCTCATGGGGGTGGGGTGGAAAAATGGAGCAACAACAACAACGAAAGCAAGTTGCTAAACTGTCTTTGGTTTATGCCACAAGTTAAGTTAGTTCATAGCGAATGTTAACTGCAATAGTTTACTTCACTCTCCTTCACTTCCACTGTGAGTAATTATGTATGTCCATAAATGCATGGAGCTAGGACTGAGAGGCTATAGAAAGTATACGAGGTAACTCGTCTCAATCTGTCTACTCCTCTCACTACCCTTCTGAATATGTCATCTTCTTATCCTCTCTGATTCACACGTATTATCTCTACTTCTGTCCTCCTTCAACTATGAAGTTCCTTTCAAATACCAACTGGAATTCATTCTCAAGTGCAGAGCTATTTCTGCCTATCATCACTGTAATTTATGTCTACACTCTAGAGCACCGTAGTTCCTCTCAGTTAATGCGTTAATTATACTCTGCCAATAAGAATAACATCTCTCATTCACTTTTTGTGGCTATAAAAATTGGATTATTACACAACTGAAGAATTTTGAAGTGTCACTATAATAATTCAACAATTCCTTCAATGAATTTGTATGCATTTAAATACAACTATGATGTCTCAATCCCAAACTAGTTGGTATGTCTATATTAGTGTCCTATATTTGTTCTGCTTTATTTGGACCATTTCATTAATTCACAGTTCGTTTACTTAAAATACAAATCTCTATATTGAAAAACAAAACAAACAAAAAAAAAAGAAATTATGGGAGTGAACATGGGATTCTTATCATCTTTTTGTCATTTTCTTAATATTTTTCATAAGTTAACTCCATAGATATATTCTTTGCCTTAAAACTTAAACTATGTTTGACTTTGGTGGAAGTGGCGGCGTTTGCGAATGGCTATGTTTAGCGTGGGGGGTGGAAGTGATAGTGTTTGCGAATGAGTGTGTTTAGCATGGGGGTTGAAGGGTAAGTCAGGGGTAAATTAGTAATTTGAATTTTAAGTTGGGAGTTGATGCTTTAAAGTAATATAGATAGATATAGACAACTACTTTATCATCTGCAAGAAAATCATACAGTAGCTTCTTTGTCTGGCAGTAGAGATGCCTTAGCAAACTTAGATAGGCTTCTTATGGCAAGTTGCATCGAAAATATCAAATTTTGCAAGGAAAATAGCCATATATGTATTGCAGAGTTTATCTCTGTTCTAGATAACTGTAGTAGTCAAAAGTAAAAATTTGTCCTGTTCTCATATTTTGAGACCTATAGCATTTCTCTTTTTCTGTTGGTTGTCCTTTCCATGCTTTTGACTGTTATTCCTTGAGGGGTTGCTTATACTTGCAGAAAATTGGTAGATATATTCGGGATATAGAAATATGTATTTGAGCATATCAGTATGTGTTTTGATATTAACTAGGCACAGCGGCTATTAAATCTGTCTCCTTATTGAAGTTGCTAGATTGAGAGCTGTGAGTTATAGCTTCTAAAGGCAGTTACATTTTTACAGGTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGGAAGAATCCAGTGACGCTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACACTGCTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTGGTATTGTCATATTGTTAAGGACTATGTTGGGATTTTTTTGTGCCTTGTGGGTGTATGGCTAAATTTCCTTATTGCTTGGACATCCTTCTTATATACTCTTCCTTTGATTGTTCCTCTTCAGGAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGCTGCTCTTAATTTTTGCAGTGTTGCCTATGTAAACATGTGTACGGATGGAGAGATTTGCTCTTAGTTTTTCCCAGTAGAAAAAAGATGGATCTCATGC-ACAATTTATTTTGGATCTTTGAA</genome_strand>
        <mrna_strand>TGTGTTTTCAATTTCTTCAGCA-CAATGAAGCTCGTCAG.................................................................................ATTTTTGATGAAGCTGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGAACCGTTGTTCATGGAACCATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGAAAGAATCCAGTGACGTTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACGCTACTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTG.........................................................................................................................GAAAGCCAATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGCTGCTCTAATTTTTTACAGTCTTGCCTATGTAAACATATGTACGGATTGAGAGATTTGCTCTTAGTTTTTCCCAGTAGAAAAAAGATGGATCTGATGCAACAATTTATTTTGGATCTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217054" ref_strand="+" ref_description="SGN-E217054 [cLEL-1-P19](-)">
      <seq>agcatgaacacacatctaaggctgtcaaaattacgctaaaggaaagaatccagtgacattggatcacatagtgtgaggggtaacaacatccgttattacatcctccctgacagcttaaatcttgatacgttactggtggaagaaacacctagggtgaagccaaagaagccaacagctggaaagcctatgggacgtggtcgtgggcgcggtcgtgggcgtggacgtggtcgaggccgctaaatgcattccggctggtctatttttttgcagtcttgcctatgtaaacatgtgtacggattgatagatttgctgttagtttttatcctgtagaaaaaagatggatctcatgcaacaatttattttggatctttgaagtcaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="97999" stop="96955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97699" g_stop="97519" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97518" i_stop="97398" i_length="121">
            <donor d_prob="0.915" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97397" g_stop="97204" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="374" r_length="196" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="378" polyA_stop="396"/>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E217054" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97699" e_stop="97519"/>
          <exon e_start="97397" e_stop="97204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGGAAGAATCCAGTGACGCTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACACTGCTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTGGTATTGTCATATTGTTAAGGACTATGTTGGGATTTTTTTGTGCCTTGTGGGTGTATGGCTAAATTTCCTTATTGCTTGGACATCCTTCTTATATACTCTTCCTTTGATTGTTCCTCTTCAGGAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGCTGCTCTTAATTTTTGCAGTGTTGCCTATGTAAACATGTGTACGGATGGAGAGATTTGCTCTTAGTTTTT-CCCAGTAGAAAAAAGATGGATCTCATGC-ACAATTTATTTTGGATCTTTGAA</genome_strand>
        <mrna_strand>AGCATGAACACACATCT-AAGGCTGTCAAAATTACGCTA-AAGGAAAGAATCCAGTGACATTGGATCACAT-AGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGATACGTTACTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTG.........................................................................................................................GAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCGGCTGGTCTATTTTTTTGCAGTCTTGCCTATGTAAACATGTGTACGGATTGATAGATTTGCTGTTAGTTTTTATCCTGTAGAAAAAAGATGGATCTCATGCAACAATTTATTTTGGATCTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286309" ref_strand="+" ref_description="SGN-E286309 [cLES-11-A19]">
      <seq>ttcaatttcttcagcaacaatgaagctcgttagatttttgatgaagctgaacaacgagactgtctcaattgagctcaaaaacggcaccgttgttcatggaaccattacaggtgtggatgttagcatgaacacacatctgaaggctgtcaaaattacgctaaaagggaagaatccagtgacgctggatcacctgagtgtgaggggtaacaacatccgttattacatcctccctgacagcttaaatcttgagacactgctggtggaagaaacacctagggtgaagccaaagaagccaacagctggaaagcctatgggacgtggtcgtgggcgcggtcgtgggcgtggacgtggtcgaggccgctaaatgcattccagctgctcttaatttttgcagtgttgcctatgtaaacatgtgtacggatggagagatttgctcttagtttttcccagtagaaaaaagatggatctcatgcacaatttattttggatctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100199" stop="96906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99899" g_stop="99867" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99866" i_stop="99786" i_length="81">
            <donor d_prob="0.346" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99785" g_stop="99709" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="110" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99708" i_stop="97711" i_length="1998">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97710" g_stop="97519" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="302" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97518" i_stop="97398" i_length="121">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97397" g_stop="97206" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="494" r_length="192" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E286309" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99899" e_stop="99867"/>
          <exon e_start="99785" e_stop="99709"/>
          <exon e_start="97710" e_stop="97519"/>
          <exon e_start="97397" e_stop="97206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATTTCTTCAGCAACAATGAAGCTCGTTAGGTTCATGCGATATCTTCATCTTTTGAGTTTCTTTTCCAGTGTGCTTAGCAATGGATTTAACTTTTACCTTTTTTTGTGCAGATTTTTGATGAAGCTGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGCACCGTTGTTCATGGAACCATTACAGGTCACCCTCCCTATCTTTCTGTCTATTTCTTTGTTATCTATATTTAGGTATTTCCCTGTCAAGTCTAAAATGAACAATCTGAACGTATGTAATTGCTGAATTGCTCGCTCCAATAGGTAAATTAAGAATGTGCTTGTATAAAATTCATTTCCTGGGTTCACAAGTTTTTTGGTAGTGTCGCTAACTGAAAGTCTAGTTGCTGGGTGGTATATGGAAGTTGCTGAACTACAACAATAACATACTACCCAGTGTAATTCCACAAGTGGTGAGGTCTTGGGAGACAGAGTGTTTGCAAGCCTTACCCCTACCTCGTAGTGTTAAAGAGGCTGTTTCCAATAGATTCTCATGTTTAAATAAACCATTTCCAAACCATTTTTTAAATAAAGGATATATAAAAATAAGTGCTCATGACAGACAAGTGAGGTTTTGCTCAAGTAGTTGAGCACTTCCACCATCAACTAGTAGGTTGAGGGTTTGGGTCAGAGGATAGATGGGAACACTATTGATCCTTCTAGTCTCATGGGGGTGGGGTGGAAAAATGGAGCAACAACAACAACGAAAGCAAGTTGCTAAACTGTCTTTGGTTTATGCCACAAGTTAAGTTAGTTCATAGCGAATGTTAACTGCAATAGTTTACTTCACTCTCCTTCACTTCCACTGTGAGTAATTATGTATGTCCATAAATGCATGGAGCTAGGACTGAGAGGCTATAGAAAGTATACGAGGTAACTCGTCTCAATCTGTCTACTCCTCTCACTACCCTTCTGAATATGTCATCTTCTTATCCTCTCTGATTCACACGTATTATCTCTACTTCTGTCCTCCTTCAACTATGAAGTTCCTTTCAAATACCAACTGGAATTCATTCTCAAGTGCAGAGCTATTTCTGCCTATCATCACTGTAATTTATGTCTACACTCTAGAGCACCGTAGTTCCTCTCAGTTAATGCGTTAATTATACTCTGCCAATAAGAATAACATCTCTCATTCACTTTTTGTGGCTATAAAAATTGGATTATTACACAACTGAAGAATTTTGAAGTGTCACTATAATAATTCAACAATTCCTTCAATGAATTTGTATGCATTTAAATACAACTATGATGTCTCAATCCCAAACTAGTTGGTATGTCTATATTAGTGTCCTATATTTGTTCTGCTTTATTTGGACCATTTCATTAATTCACAGTTCGTTTACTTAAAATACAAATCTCTATATTGAAAAACAAAACAAACAAAAAAAAAAGAAATTATGGGAGTGAACATGGGATTCTTATCATCTTTTTGTCATTTTCTTAATATTTTTCATAAGTTAACTCCATAGATATATTCTTTGCCTTAAAACTTAAACTATGTTTGACTTTGGTGGAAGTGGCGGCGTTTGCGAATGGCTATGTTTAGCGTGGGGGGTGGAAGTGATAGTGTTTGCGAATGAGTGTGTTTAGCATGGGGGTTGAAGGGTAAGTCAGGGGTAAATTAGTAATTTGAATTTTAAGTTGGGAGTTGATGCTTTAAAGTAATATAGATAGATATAGACAACTACTTTATCATCTGCAAGAAAATCATACAGTAGCTTCTTTGTCTGGCAGTAGAGATGCCTTAGCAAACTTAGATAGGCTTCTTATGGCAAGTTGCATCGAAAATATCAAATTTTGCAAGGAAAATAGCCATATATGTATTGCAGAGTTTATCTCTGTTCTAGATAACTGTAGTAGTCAAAAGTAAAAATTTGTCCTGTTCTCATATTTTGAGACCTATAGCATTTCTCTTTTTCTGTTGGTTGTCCTTTCCATGCTTTTGACTGTTATTCCTTGAGGGGTTGCTTATACTTGCAGAAAATTGGTAGATATATTCGGGATATAGAAATATGTATTTGAGCATATCAGTATGTGTTTTGATATTAACTAGGCACAGCGGCTATTAAATCTGTCTCCTTATTGAAGTTGCTAGATTGAGAGCTGTGAGTTATAGCTTCTAAAGGCAGTTACATTTTTACAGGTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGGAAGAATCCAGTGACGCTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACACTGCTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTGGTATTGTCATATTGTTAAGGACTATGTTGGGATTTTTTTGTGCCTTGTGGGTGTATGGCTAAATTTCCTTATTGCTTGGACATCCTTCTTATATACTCTTCCTTTGATTGTTCCTCTTCAGGAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGCTGCTCTTAATTTTTGCAGTGTTGCCTATGTAAACATGTGTACGGATGGAGAGATTTGCTCTTAGTTTTTCCCAGTAGAAAAAAGATGGATCTCATGCACAATTTATTTTGGATCTTTG</genome_strand>
        <mrna_strand>TTCAATTTCTTCAGCAACAATGAAGCTCGTTAG.................................................................................ATTTTTGATGAAGCTGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGCACCGTTGTTCATGGAACCATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGGAAGAATCCAGTGACGCTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACACTGCTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTG.........................................................................................................................GAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGCTGCTCTTAATTTTTGCAGTGTTGCCTATGTAAACATGTGTACGGATGGAGAGATTTGCTCTTAGTTTTTCCCAGTAGAAAAAAGATGGATCTCATGCACAATTTATTTTGGATCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472068" ref_strand="+" ref_description="SGN-E472068 [cSTB-27-I4]">
      <seq>agaactacgagactgtctcaattgagctcaaaaacggaaccgttgttcatggaaccattacaggtgtggatgttagcatgaacacacatctgaaggctgtcaaaattacgctaaaaggaaagaatccagtgacgttggatcacctgagtgtgaggggtaacaacatccgttattacatcctccctgacagcttaaatattgagacagctactggtggaagaaacacctacggtgaagccaaagaagccaacagctggaaagcctatgggtcgtggtcgtgggcgcggacgcgggcgtggacttggtcaaggccggttaatgcattcgagctgctctaatattttgcaatcttgcctatgtaaacatgtgtacggattgagagatttgctcttagtttttcccattagaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100070" stop="96940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99771" g_stop="99709" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99708" i_stop="97711" i_length="1998">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97710" g_stop="97519" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="256" r_length="193" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97518" i_stop="97398" i_length="121">
            <donor d_prob="0.915" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97397" g_stop="97240" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="414" r_length="158" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E472068" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99771" e_stop="99709"/>
          <exon e_start="97710" e_stop="97519"/>
          <exon e_start="97397" e_stop="97240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGCACCGTTGTTCATGGAACCATTACAGGTCACCCTCCCTATCTTTCTGTCTATTTCTTTGTTATCTATATTTAGGTATTTCCCTGTCAAGTCTAAAATGAACAATCTGAACGTATGTAATTGCTGAATTGCTCGCTCCAATAGGTAAATTAAGAATGTGCTTGTATAAAATTCATTTCCTGGGTTCACAAGTTTTTTGGTAGTGTCGCTAACTGAAAGTCTAGTTGCTGGGTGGTATATGGAAGTTGCTGAACTACAACAATAACATACTACCCAGTGTAATTCCACAAGTGGTGAGGTCTTGGGAGACAGAGTGTTTGCAAGCCTTACCCCTACCTCGTAGTGTTAAAGAGGCTGTTTCCAATAGATTCTCATGTTTAAATAAACCATTTCCAAACCATTTTTTAAATAAAGGATATATAAAAATAAGTGCTCATGACAGACAAGTGAGGTTTTGCTCAAGTAGTTGAGCACTTCCACCATCAACTAGTAGGTTGAGGGTTTGGGTCAGAGGATAGATGGGAACACTATTGATCCTTCTAGTCTCATGGGGGTGGGGTGGAAAAATGGAGCAACAACAACAACGAAAGCAAGTTGCTAAACTGTCTTTGGTTTATGCCACAAGTTAAGTTAGTTCATAGCGAATGTTAACTGCAATAGTTTACTTCACTCTCCTTCACTTCCACTGTGAGTAATTATGTATGTCCATAAATGCATGGAGCTAGGACTGAGAGGCTATAGAAAGTATACGAGGTAACTCGTCTCAATCTGTCTACTCCTCTCACTACCCTTCTGAATATGTCATCTTCTTATCCTCTCTGATTCACACGTATTATCTCTACTTCTGTCCTCCTTCAACTATGAAGTTCCTTTCAAATACCAACTGGAATTCATTCTCAAGTGCAGAGCTATTTCTGCCTATCATCACTGTAATTTATGTCTACACTCTAGAGCACCGTAGTTCCTCTCAGTTAATGCGTTAATTATACTCTGCCAATAAGAATAACATCTCTCATTCACTTTTTGTGGCTATAAAAATTGGATTATTACACAACTGAAGAATTTTGAAGTGTCACTATAATAATTCAACAATTCCTTCAATGAATTTGTATGCATTTAAATACAACTATGATGTCTCAATCCCAAACTAGTTGGTATGTCTATATTAGTGTCCTATATTTGTTCTGCTTTATTTGGACCATTTCATTAATTCACAGTTCGTTTACTTAAAATACAAATCTCTATATTGAAAAACAAAACAAACAAAAAAAAAAGAAATTATGGGAGTGAACATGGGATTCTTATCATCTTTTTGTCATTTTCTTAATATTTTTCATAAGTTAACTCCATAGATATATTCTTTGCCTTAAAACTTAAACTATGTTTGACTTTGGTGGAAGTGGCGGCGTTTGCGAATGGCTATGTTTAGCGTGGGGGGTGGAAGTGATAGTGTTTGCGAATGAGTGTGTTTAGCATGGGGGTTGAAGGGTAAGTCAGGGGTAAATTAGTAATTTGAATTTTAAGTTGGGAGTTGATGCTTTAAAGTAATATAGATAGATATAGACAACTACTTTATCATCTGCAAGAAAATCATACAGTAGCTTCTTTGTCTGGCAGTAGAGATGCCTTAGCAAACTTAGATAGGCTTCTTATGGCAAGTTGCATCGAAAATATCAAATTTTGCAAGGAAAATAGCCATATATGTATTGCAGAGTTTATCTCTGTTCTAGATAACTGTAGTAGTCAAAAGTAAAAATTTGTCCTGTTCTCATATTTTGAGACCTATAGCATTTCTCTTTTTCTGTTGGTTGTCCTTTCCATGCTTTTGACTGTTATTCCTTGAGGGGTTGCTTATACTTGCAGAAAATTGGTAGATATATTCGGGATATAGAAATATGTATTTGAGCATATCAGTATGTGTTTTGATATTAACTAGGCACAGCGGCTATTAAATCTGTCTCCTTATTGAAGTTGCTAGATTGAGAGCTGTGAGTTATAGCTTCTAAAGGCAGTTACATTTTTACAGGTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGGAAGAATCCAGTGACGCTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACA-CTGCTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTGGTATTGTCATATTGTTAAGGACTATGTTGGGATTTTTTTGTGCCTTGTGGGTGTATGGCTAAATTTCCTTATTGCTTGGACATCCTTCTTATATACTCTTCCTTTGATTGTTCCTCTTCAGGAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGCTGCTCTTAATTTTTGCAGTGTTGCCTATGTAAACATGTGTACGGATGGAGAGATTTGCTCTTAGTTTTTCCCAGTAGAAAAAAG</genome_strand>
        <mrna_strand>AGAACTACGAGACTGTCTCAATTGAGCTCAAAAACGGAACCGTTGTTCATGGAACCATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGAAAGAATCCAGTGACGTTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATATTGAGACAGCTACTGGTGGAAGAAACACCTACGGTGAAGCCAAAGAAGCCAACAGCTG.........................................................................................................................GAAAGCCTATGGGTCGTGGTCGTGGGCGCGGACGCGGGCGTGGACTTGGTCAAGGCCGGTTAATGCATTCGAGCTGCTCTAATATTTTGCAATCTTGCCTATGTAAACATGTGTACGGATTGAGAGATTTGCTCTTAGTTTTTCCCATTAGAAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730376" ref_strand="+" ref_description="SGN-E730376 [LA23DG07]">
      <seq>ccctatttagccaggtatttatccctttatttaagtctatccacattctcgtcggaaagtaagtatgagtgacaatcggagtcaaagacggcgagttggagagtcgtccgaatcggaagattctggaatttacaatgagaggattcttatcttggtgtttgcctcaatgaattgggatattcctacactatgtcgaacagcctcggtaaataggaaactacgtgcagttgcgagaaggattctatggaaagagctttgcgtgtatcgagctccgcaaatgataacggccttaacggacggcggtagaattggcggcggatggcaggcgatggcaaaattgatgttcttctgcaatggatgtcaatcgacccggcatttccaagtgtgccgaccggaagcgggtcacttcgtgaaaacatcccggttttcgaagacatccggtcggagttttttggtgaagaaatgtacaagtgatttgctgtacgtgagtgatccgtgtgaacattcaactgggagcgatgatttggggcttttcagaggggtattttgggggtttatgaaatctaggacaagggcgagtttgatcagaagacgagtggagcttgaagaaggagccaagtgtccattctgtcgtgctcgggtttggagtatgacggcggctcggctcatacccaaaagtgcggcgcggcggcttggttcgatggagagtggattggaatactttgtatgtgttaatgggcacttatatggtgcttgttggctggttcctttatcgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100867" stop="102237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101160" g_stop="101937" g_length="778"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="778" r_length="778" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E730376" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101160" e_stop="101937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACGTAGCCAGGTATTTATCCCTTTATTTAAGTCTATCCACATTCTCGTCGGAAAGTAAGTATGAGTGACAATCGGAGTCAAAGACGGCGAGTTGGAGAGTCGTCCGAATCGGAAGATTCTGGAATTTACAATGAGAGGATTCTTATCTTGGTGTTTGCCTCAATGAATTGGGATATTCCTACACTATGTCGAACAGCCTCGGTAAATAGGAAACTACGTGCAGTTGCGAGAAGGATTCTATGGAAAGAGCTTTGCGTGTATCGAGCTCCGCAAATGATAACGGCCTTAACGGACGGCGGTAGAATTGGCGGCGGATGGCAGGCGATGGCAAAATTGATGTTCTTCTGCAATGGATGTCAATCGACCCGGCATTTCCAAGTGTGCCGACCGGAAGCGGGTCACTTCGTGAAAACATCCCGGTTTTCGAAGACATCCGGTCGGAGTTTTTTGGTGAAGAAATGTACAAGTGATTTGCTGTACGTGAGTGATCCGTGTGAACATTCAACTGGGAGCGATGATTTGGGGCTTTTCAGAGGGGTATTTTGGGGGTTTATGAAATCTAGGACAAGGGCGAGTTTGATCAGAAGACGAGTGGAGCTTGAAGAAGGAGCCAAGTGTCCATTCTGTCGTGCTCGGGTTTGGAGTATGACGGCGGCTCGGCTCATACCCAAAAGTGCGGCGCGGCGGCTTGGTTCGATGGAGAGTGGATTGGAGTACTTTGTATGTGTTAATGGGCACTTATATGGTGCTTGTTGGCTGGTTCCTTTATCGTCT</genome_strand>
        <mrna_strand>CCCTATTTAGCCAGGTATTTATCCCTTTATTTAAGTCTATCCACATTCTCGTCGGAAAGTAAGTATGAGTGACAATCGGAGTCAAAGACGGCGAGTTGGAGAGTCGTCCGAATCGGAAGATTCTGGAATTTACAATGAGAGGATTCTTATCTTGGTGTTTGCCTCAATGAATTGGGATATTCCTACACTATGTCGAACAGCCTCGGTAAATAGGAAACTACGTGCAGTTGCGAGAAGGATTCTATGGAAAGAGCTTTGCGTGTATCGAGCTCCGCAAATGATAACGGCCTTAACGGACGGCGGTAGAATTGGCGGCGGATGGCAGGCGATGGCAAAATTGATGTTCTTCTGCAATGGATGTCAATCGACCCGGCATTTCCAAGTGTGCCGACCGGAAGCGGGTCACTTCGTGAAAACATCCCGGTTTTCGAAGACATCCGGTCGGAGTTTTTTGGTGAAGAAATGTACAAGTGATTTGCTGTACGTGAGTGATCCGTGTGAACATTCAACTGGGAGCGATGATTTGGGGCTTTTCAGAGGGGTATTTTGGGGGTTTATGAAATCTAGGACAAGGGCGAGTTTGATCAGAAGACGAGTGGAGCTTGAAGAAGGAGCCAAGTGTCCATTCTGTCGTGCTCGGGTTTGGAGTATGACGGCGGCTCGGCTCATACCCAAAAGTGCGGCGCGGCGGCTTGGTTCGATGGAGAGTGGATTGGAATACTTTGTATGTGTTAATGGGCACTTATATGGTGCTTGTTGGCTGGTTCCTTTATCGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540830" ref_strand="+" ref_description="SGN-E540830 [TUS-61-E24](-)">
      <seq>tgagaattgaggttcacttgccctacttttccagaattgagtgtctctgaaattgggagttttgtccggtgaatttgaaactaaaggcatcattcatcagttttgtccggtgaattggagttatttctggcagctgaagcccgaaaaacgtgtgaactgacgagctttcccatagaaatagaaaatgttgtttttctcatacttcaaggacatggtgggcagagaagtgacagtggaactgaagaatgatttggctatccgaggtacactccattcagtcgatcagtatctcaacattaagctcgaaaacacaagggtcgttgatgaagacaagtaccctcacatgcgttcggtgaggaactgcttcatcagaggatcagtggtgagatacgtccagttacctccagacggagtcgacatagagctgcttcatgatgctacgaggagagaagctcgtggtggctaaaagcctaaaatttgagaccttcaaaagcggatgtacttttaaacttttgagtgggtcaatcagcatgtactgatttgttttgttaaatgtaattttagatgctattgcatgcagtgctttgtattcctgctgttactcctctccatttcaacctaactgtgtggtgaagccttggatatgaatgtctgggactcatattcccttgcctaaaaaaaaaaaaaaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112621" stop="108495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112321" g_stop="112200" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112199" i_stop="111558" i_length="642">
            <donor d_prob="0.753" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111557" g_stop="111493" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="187" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111492" i_stop="111275" i_length="218">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111274" g_stop="111116" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="346" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111115" i_stop="109124" i_length="1992">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109123" g_stop="108795" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="675" r_length="329" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="676" polyA_stop="695"/>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E540830" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112321" e_stop="112200"/>
          <exon e_start="111557" e_stop="111493"/>
          <exon e_start="111274" e_stop="111116"/>
          <exon e_start="109123" e_stop="108795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAATTGAGGTTCACTTGCCCTACTTTTCCAGAATTGAGTGTCTCTGAAATTGGGAGTTTTGTCCGGTGAATTTGAAACTAAAGGCATCATTCATCAGTTTTGTCCGGTGAATTGGAGTTGTAAGCTGCCCTTTTCCTATCTCTCTCTCGCACTCTCTTTTCTACTGCTGCCGATGCTTGTTTCACCTTCACACCAAAACCCTAGTCCTTCTTTTTCATAGAGCGAGTACGATTTTTACTATTATTTGTTGTTGTTGTGTTTATATGTATAAATATAGCCTTACCTTCAATTTATCATTGTTTTATGTGATTCTAGTTTGCTTTCCATTTGAGGTGTTCCTTTGTGGTTATTTCTGTTTATGAAAACAAAGTTTACTTTCCATTTGAGGTGTTCCTTTGTGGTTATTTCTGTTAATGAAAACAAAGCTGGAAAAATTATTTGTTTTAATCAGCTATGGCCAGAATTTGGGATGAGAGAACTTGACTTTCAAGTCATTTACCAATTCCCTTTTTCAATTGATTCAAATTGCTCCTTAATTCAAATAAAGATATTCAAACATGTGTTTGAGTTTTAAGATTAATATGCTAGAGAATTTGATAGGTAATATCCATGTAAATGATACTCCCTCCTTTGAATGTATTAGTGAATTTGAATTATTAAAACTTGTTAGTTTTGTGTTGAAATGGAATATTATGATATTAATTGGAATCATGAAAGTTCTAACATTTTTGTTACTTAACGTATACTGTATGAAATGTCAGATTTCTGGCAGCTGAAGCCCGAAAAACGTGTGAACTGACGAGCTTTCCCATAGAAATAGAAAATGGTAATGTTACTCTATCCTTTTCCTCTTGATGTTTATTCCTCACTATTCAGTCTAATCCCTTTAATATCTATCTCCATTGAGTTTTTTAATGAAAAAAGAGATCTTCTGATTGTTGTAGTTTGGAAATTCCGATTCCTTCATGAAAATCAATCGTTTTCATAGCTTTTATATTTTTAACTTGTATCTAACTGAGTTTTCTCCCATCCCACTCTTTCCAGTTGTTTTTCTCATACTTCAAGGACATGGTGGGCAGAGAAGTGACAGTGGAACTGAAGAATGATTTGGCTATCCGAGGTACACTCCATTCAGTCGATCAGTATCTCAACATTAAGCTCGAAAACACAAGGGTCGTTGATGAAGACAAGTACCCTCACATGGTAATTGCATTCCCTTTTCTCCTTCATTCGGGTTTTGGTGGGTGGATAAAGTAATGCTTCTTGATTAGGAATGCTAACTTCTGTACTTTTATATACAATGGTTGTATTGTTAAGCATGCTAGAGTTCTCTTAGGCCTCTGACAATTTTGGGTGAGTAAGTTAACCACTAGGGAATTCAGTAGTGTTCACTGCTCTTTCTTCCATATCTTTACTATACTTGTTTCTTATTTCTGCTGTTGATTTCTTTTAGGAAGTGATATTCAGTTATTCACTGCTCTCTCTCTCTCTCTCTACACACACATATATTCAAGAATTGATATGCAACTCGGCTTTAATTATACTGTTGAGGTTCATTCTATTTTCTGCGTATATGCAGTATGCACTAGGTGGAAGGATGGTATCTGTTCCATAATATTGTGATTGTAGTTCCAGCGAACCAATAGTTCTTTTAATAGCCATTGACTGTAGTTTTTTTGATAGCTATTGACTGTTGGTTGGATATGTGCACTGGAAAAGGTTAATGATTTGTGAATATTATTTTGATGATATCAAGCCTTTTATAAAGCACCTGCTGCTTCAATCCTTCGAGGTTGGAGGCCCTAGTCGCCAAGGGAGTGAAGTGGAAAGGGCCACTATGACATGGGGAGGGAGGATTAGGTGGAAAGGTAGATGTAGCCATGTAGGTTACCATATATAAAAGCAAGAAAAGTATCCTTGACAATTCGCATACTAATGACTGCATTATTGCAAGGCTAAGAAATGGTAAGCAATAGGGTCTAAAACAGTTATTCCTTATCAATTTGTCAAGAATTTATCTGAATCAACTATTGCCACATATGACAACTATTAGTTATCAAAAATGACAAACTATTAATGTTATACAGGTTTTTCTTTAAGCTACGTGATCTTGCAGATCTAATGCCTGAAATGTGAAATGAGTACATTACACTATCTCTAGTCGCAAGTTTCTGAGTGGGTTGTATTAGCTTGACTGGATTATTTTATTTCTCGAAATTTTCCTATGTATAGATCATCTAGTATTCATGGTTAAATATGTTAGCTATTATTCCAAGGTTCTATTTAAGTTAATTCCAGCCTGGAATTGCCTGTTATGGATACAGGAATCTAATGCCAATTCCAATCAGTGGATCATTTTAGTAGGTGCTTCATCAAATAGGCTTAAATCATTAATTAACTTGTCGTGCAAATTCAGAACTAAAATTATGTGGCAAGGTTGGTCTCCAGTATGTTGCCCTTTCCACTATCAGCTCTTTTTTTTAGTAAGTACTTCAATTAAAAAACAAATCCAAGACATAGGAGTGAGGTTTTTACCCTGTGCACACCCAAAGGGTAGCGTCTGCGGGTTTCCCTTGCCATTTTTTTTAAAAAAAACAGTACCAAGATGGTACTGCAGCTTTCTCTGGATCATACTACATCATTGACCTAGACCATCTTTATTTTTATGGCAACACAAAATATCAGCAGTCTTTCGGACACAACTTCTTTACCTCACACAAGGTAGGGGTAAGGTCTGCATCACACAACCTCTCTATCTCTGACTTACACTAGGTTTGTTGTTTTTGTTGTGCAACTGGAACTGGAGAAACAGTTGTCAGAAGATTTGTATATAAGATAAATCTCCCAAGTATGCAAGGGTATTTTGTTGTTGCTGCACGGAGAGTAGATAGCTTACAGTTTCTGCCTTACAAAATCCGGAAAAACAATGTAAAAGTAGCCTTTAAGCAACTACTTGCAAGCCTTTGCTTGTGCACAAGACATGCAAAGTTCCAGAAAATTACAAGTACTAAAAATATATGCAAATATAATAGTATGTTTACTGGTTGACACTGGTGTATTTAGCAGTTTCACCCTCTCCTTTTTTACTTGGTTCACTTTGCTCCGCCTTTTCCTGATATTGTTTGTATTTTTTCACGTGATATGTTTTTAGTTGGTATTACCATTAACATTTTTCATGTCACTTTGCTGTAATAGCGTTCGGTGAGGAACTGCTTCATCAGAGGATCAGTGGTGAGATACGTCCAGTTACCTCCAGACGGAGTCGACATAGAGCTGCTTCATGATGCTACGAGGAGAGAAGCTCGTGGTGGCTAAAAGCCTAAAATTTGAGACCTTCAAAAGCGGATGTACTTTTAAACTTTTGAGTGGGTCAATCAGCATGTACTGATTTGTTTTGTTAAATGTAATTTTAGATGCTATTGCATGCAGTGCTTTGTATTCCTGCTGTTACTCCTCTCCATTTCAACCTAACTGTGTGGTGAAGCCTTGGATATGAATGTCTGGGACTCATATTCCCTTGCCTA</genome_strand>
        <mrna_strand>TGAGAATTGAGGTTCACTTGCCCTACTTTTCCAGAATTGAGTGTCTCTGAAATTGGGAGTTTTGTCCGGTGAATTTGAAACTAAAGGCATCATTCATCAGTTTTGTCCGGTGAATTGGAGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTGGCAGCTGAAGCCCGAAAAACGTGTGAACTGACGAGCTTTCCCATAGAAATAGAAAATG..........................................................................................................................................................................................................................TTGTTTTTCTCATACTTCAAGGACATGGTGGGCAGAGAAGTGACAGTGGAACTGAAGAATGATTTGGCTATCCGAGGTACACTCCATTCAGTCGATCAGTATCTCAACATTAAGCTCGAAAACACAAGGGTCGTTGATGAAGACAAGTACCCTCACATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCGGTGAGGAACTGCTTCATCAGAGGATCAGTGGTGAGATACGTCCAGTTACCTCCAGACGGAGTCGACATAGAGCTGCTTCATGATGCTACGAGGAGAGAAGCTCGTGGTGGCTAAAAGCCTAAAATTTGAGACCTTCAAAAGCGGATGTACTTTTAAACTTTTGAGTGGGTCAATCAGCATGTACTGATTTGTTTTGTTAAATGTAATTTTAGATGCTATTGCATGCAGTGCTTTGTATTCCTGCTGTTACTCCTCTCCATTTCAACCTAACTGTGTGGTGAAGCCTTGGATATGAATGTCTGGGACTCATATTCCCTTGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540833" ref_strand="+" ref_description="SGN-E540833 [TUS-61-E24]">
      <seq>tgagaattgaggttcacttgccctacttttccagaattgagtgtctctgaaattgggagttttgtccggtgaatttgaaactaaaggcatcattcatcagttttgtccggtgaattggagttatttctggcagctgaagcccgaaaaacgtgtgaactgacgagctttcccatagaaatagaaaatgttgtttttctcatacttcaaggacatggtgggcagagaagtgacagtggaactgaagaatgatttggctatccgaggtacactccattcagtcgatcagtatctcaacattaagctcgaaaacacaagggtcgttgatgaagacaagtaccctcacatgcgttcggtgaggaactgcttcatcagaggatcagtggtgagatacgtccagttacctccagacggagtcgacatagagctgcttcatgatgctacgaggagagaagctcgtggtggctaaaagcctaaaatttgagaccttcaaaagcggatgtacttttaaacttttgagtgggtcaatcagcatgtactgatttgttttgttaaatgtaattttagatgctattgcatgcagtgctttgtattcctgctgttactcctctccatttcaacctaactgtgtggtgaagccttggatatgaatgtctgggactcatattcccttgcctaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112621" stop="108495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112321" g_stop="112200" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112199" i_stop="111558" i_length="642">
            <donor d_prob="0.753" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111557" g_stop="111493" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="187" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111492" i_stop="111275" i_length="218">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111274" g_stop="111116" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="346" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111115" i_stop="109124" i_length="1992">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109123" g_stop="108795" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="675" r_length="329" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="676" polyA_stop="695"/>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E540833" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112321" e_stop="112200"/>
          <exon e_start="111557" e_stop="111493"/>
          <exon e_start="111274" e_stop="111116"/>
          <exon e_start="109123" e_stop="108795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAATTGAGGTTCACTTGCCCTACTTTTCCAGAATTGAGTGTCTCTGAAATTGGGAGTTTTGTCCGGTGAATTTGAAACTAAAGGCATCATTCATCAGTTTTGTCCGGTGAATTGGAGTTGTAAGCTGCCCTTTTCCTATCTCTCTCTCGCACTCTCTTTTCTACTGCTGCCGATGCTTGTTTCACCTTCACACCAAAACCCTAGTCCTTCTTTTTCATAGAGCGAGTACGATTTTTACTATTATTTGTTGTTGTTGTGTTTATATGTATAAATATAGCCTTACCTTCAATTTATCATTGTTTTATGTGATTCTAGTTTGCTTTCCATTTGAGGTGTTCCTTTGTGGTTATTTCTGTTTATGAAAACAAAGTTTACTTTCCATTTGAGGTGTTCCTTTGTGGTTATTTCTGTTAATGAAAACAAAGCTGGAAAAATTATTTGTTTTAATCAGCTATGGCCAGAATTTGGGATGAGAGAACTTGACTTTCAAGTCATTTACCAATTCCCTTTTTCAATTGATTCAAATTGCTCCTTAATTCAAATAAAGATATTCAAACATGTGTTTGAGTTTTAAGATTAATATGCTAGAGAATTTGATAGGTAATATCCATGTAAATGATACTCCCTCCTTTGAATGTATTAGTGAATTTGAATTATTAAAACTTGTTAGTTTTGTGTTGAAATGGAATATTATGATATTAATTGGAATCATGAAAGTTCTAACATTTTTGTTACTTAACGTATACTGTATGAAATGTCAGATTTCTGGCAGCTGAAGCCCGAAAAACGTGTGAACTGACGAGCTTTCCCATAGAAATAGAAAATGGTAATGTTACTCTATCCTTTTCCTCTTGATGTTTATTCCTCACTATTCAGTCTAATCCCTTTAATATCTATCTCCATTGAGTTTTTTAATGAAAAAAGAGATCTTCTGATTGTTGTAGTTTGGAAATTCCGATTCCTTCATGAAAATCAATCGTTTTCATAGCTTTTATATTTTTAACTTGTATCTAACTGAGTTTTCTCCCATCCCACTCTTTCCAGTTGTTTTTCTCATACTTCAAGGACATGGTGGGCAGAGAAGTGACAGTGGAACTGAAGAATGATTTGGCTATCCGAGGTACACTCCATTCAGTCGATCAGTATCTCAACATTAAGCTCGAAAACACAAGGGTCGTTGATGAAGACAAGTACCCTCACATGGTAATTGCATTCCCTTTTCTCCTTCATTCGGGTTTTGGTGGGTGGATAAAGTAATGCTTCTTGATTAGGAATGCTAACTTCTGTACTTTTATATACAATGGTTGTATTGTTAAGCATGCTAGAGTTCTCTTAGGCCTCTGACAATTTTGGGTGAGTAAGTTAACCACTAGGGAATTCAGTAGTGTTCACTGCTCTTTCTTCCATATCTTTACTATACTTGTTTCTTATTTCTGCTGTTGATTTCTTTTAGGAAGTGATATTCAGTTATTCACTGCTCTCTCTCTCTCTCTCTACACACACATATATTCAAGAATTGATATGCAACTCGGCTTTAATTATACTGTTGAGGTTCATTCTATTTTCTGCGTATATGCAGTATGCACTAGGTGGAAGGATGGTATCTGTTCCATAATATTGTGATTGTAGTTCCAGCGAACCAATAGTTCTTTTAATAGCCATTGACTGTAGTTTTTTTGATAGCTATTGACTGTTGGTTGGATATGTGCACTGGAAAAGGTTAATGATTTGTGAATATTATTTTGATGATATCAAGCCTTTTATAAAGCACCTGCTGCTTCAATCCTTCGAGGTTGGAGGCCCTAGTCGCCAAGGGAGTGAAGTGGAAAGGGCCACTATGACATGGGGAGGGAGGATTAGGTGGAAAGGTAGATGTAGCCATGTAGGTTACCATATATAAAAGCAAGAAAAGTATCCTTGACAATTCGCATACTAATGACTGCATTATTGCAAGGCTAAGAAATGGTAAGCAATAGGGTCTAAAACAGTTATTCCTTATCAATTTGTCAAGAATTTATCTGAATCAACTATTGCCACATATGACAACTATTAGTTATCAAAAATGACAAACTATTAATGTTATACAGGTTTTTCTTTAAGCTACGTGATCTTGCAGATCTAATGCCTGAAATGTGAAATGAGTACATTACACTATCTCTAGTCGCAAGTTTCTGAGTGGGTTGTATTAGCTTGACTGGATTATTTTATTTCTCGAAATTTTCCTATGTATAGATCATCTAGTATTCATGGTTAAATATGTTAGCTATTATTCCAAGGTTCTATTTAAGTTAATTCCAGCCTGGAATTGCCTGTTATGGATACAGGAATCTAATGCCAATTCCAATCAGTGGATCATTTTAGTAGGTGCTTCATCAAATAGGCTTAAATCATTAATTAACTTGTCGTGCAAATTCAGAACTAAAATTATGTGGCAAGGTTGGTCTCCAGTATGTTGCCCTTTCCACTATCAGCTCTTTTTTTTAGTAAGTACTTCAATTAAAAAACAAATCCAAGACATAGGAGTGAGGTTTTTACCCTGTGCACACCCAAAGGGTAGCGTCTGCGGGTTTCCCTTGCCATTTTTTTTAAAAAAAACAGTACCAAGATGGTACTGCAGCTTTCTCTGGATCATACTACATCATTGACCTAGACCATCTTTATTTTTATGGCAACACAAAATATCAGCAGTCTTTCGGACACAACTTCTTTACCTCACACAAGGTAGGGGTAAGGTCTGCATCACACAACCTCTCTATCTCTGACTTACACTAGGTTTGTTGTTTTTGTTGTGCAACTGGAACTGGAGAAACAGTTGTCAGAAGATTTGTATATAAGATAAATCTCCCAAGTATGCAAGGGTATTTTGTTGTTGCTGCACGGAGAGTAGATAGCTTACAGTTTCTGCCTTACAAAATCCGGAAAAACAATGTAAAAGTAGCCTTTAAGCAACTACTTGCAAGCCTTTGCTTGTGCACAAGACATGCAAAGTTCCAGAAAATTACAAGTACTAAAAATATATGCAAATATAATAGTATGTTTACTGGTTGACACTGGTGTATTTAGCAGTTTCACCCTCTCCTTTTTTACTTGGTTCACTTTGCTCCGCCTTTTCCTGATATTGTTTGTATTTTTTCACGTGATATGTTTTTAGTTGGTATTACCATTAACATTTTTCATGTCACTTTGCTGTAATAGCGTTCGGTGAGGAACTGCTTCATCAGAGGATCAGTGGTGAGATACGTCCAGTTACCTCCAGACGGAGTCGACATAGAGCTGCTTCATGATGCTACGAGGAGAGAAGCTCGTGGTGGCTAAAAGCCTAAAATTTGAGACCTTCAAAAGCGGATGTACTTTTAAACTTTTGAGTGGGTCAATCAGCATGTACTGATTTGTTTTGTTAAATGTAATTTTAGATGCTATTGCATGCAGTGCTTTGTATTCCTGCTGTTACTCCTCTCCATTTCAACCTAACTGTGTGGTGAAGCCTTGGATATGAATGTCTGGGACTCATATTCCCTTGCCTA</genome_strand>
        <mrna_strand>TGAGAATTGAGGTTCACTTGCCCTACTTTTCCAGAATTGAGTGTCTCTGAAATTGGGAGTTTTGTCCGGTGAATTTGAAACTAAAGGCATCATTCATCAGTTTTGTCCGGTGAATTGGAGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTGGCAGCTGAAGCCCGAAAAACGTGTGAACTGACGAGCTTTCCCATAGAAATAGAAAATG..........................................................................................................................................................................................................................TTGTTTTTCTCATACTTCAAGGACATGGTGGGCAGAGAAGTGACAGTGGAACTGAAGAATGATTTGGCTATCCGAGGTACACTCCATTCAGTCGATCAGTATCTCAACATTAAGCTCGAAAACACAAGGGTCGTTGATGAAGACAAGTACCCTCACATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCGGTGAGGAACTGCTTCATCAGAGGATCAGTGGTGAGATACGTCCAGTTACCTCCAGACGGAGTCGACATAGAGCTGCTTCATGATGCTACGAGGAGAGAAGCTCGTGGTGGCTAAAAGCCTAAAATTTGAGACCTTCAAAAGCGGATGTACTTTTAAACTTTTGAGTGGGTCAATCAGCATGTACTGATTTGTTTTGTTAAATGTAATTTTAGATGCTATTGCATGCAGTGCTTTGTATTCCTGCTGTTACTCCTCTCCATTTCAACCTAACTGTGTGGTGAAGCCTTGGATATGAATGTCTGGGACTCATATTCCCTTGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304047" ref_strand="+" ref_description="SGN-E304047 [cLEX-6-K11](-)">
      <seq>aaatgttgtttttctcatacttcaaggacatggtgggcagagaagtgacagtggaactgaagaatgatttggctatccgaggtacactccattcagtcgatcagtatctcaacattaagctcgaaaacacaagggtcgttgatgaagacaagtaccctcacatgcgttcggtgaggaactgcttcatcagaggatcagtggtgagatacgtccagttacctccagacggagtcgacatagagctgcttcatgatgctacgaggagagaagctcgtggtggctaaaagcctaaaatttgagaccttcaaaagcggatgtacttttaaacttttgagtgggtcaatcagcatgtactgatttgttttgttaaatgtaattttagatgctattgcatgcagtgctttgtattcctgctgttactcctctccatttcaacctaactgtgtggtgaagccttggatatgaatgtctggggctccaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="111575" stop="108507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111497" g_stop="111493" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111492" i_stop="111275" i_length="218">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111274" g_stop="111116" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="164" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111115" i_stop="109124" i_length="1992">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109123" g_stop="108810" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="478" r_length="314" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="480" polyA_stop="502"/>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E304047" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111497" e_stop="111493"/>
          <exon e_start="111274" e_stop="111116"/>
          <exon e_start="109123" e_stop="108810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGTAATGTTACTCTATCCTTTTCCTCTTGATGTTTATTCCTCACTATTCAGTCTAATCCCTTTAATATCTATCTCCATTGAGTTTTTTAATGAAAAAAGAGATCTTCTGATTGTTGTAGTTTGGAAATTCCGATTCCTTCATGAAAATCAATCGTTTTCATAGCTTTTATATTTTTAACTTGTATCTAACTGAGTTTTCTCCCATCCCACTCTTTCCAGTTGTTTTTCTCATACTTCAAGGACATGGTGGGCAGAGAAGTGACAGTGGAACTGAAGAATGATTTGGCTATCCGAGGTACACTCCATTCAGTCGATCAGTATCTCAACATTAAGCTCGAAAACACAAGGGTCGTTGATGAAGACAAGTACCCTCACATGGTAATTGCATTCCCTTTTCTCCTTCATTCGGGTTTTGGTGGGTGGATAAAGTAATGCTTCTTGATTAGGAATGCTAACTTCTGTACTTTTATATACAATGGTTGTATTGTTAAGCATGCTAGAGTTCTCTTAGGCCTCTGACAATTTTGGGTGAGTAAGTTAACCACTAGGGAATTCAGTAGTGTTCACTGCTCTTTCTTCCATATCTTTACTATACTTGTTTCTTATTTCTGCTGTTGATTTCTTTTAGGAAGTGATATTCAGTTATTCACTGCTCTCTCTCTCTCTCTCTACACACACATATATTCAAGAATTGATATGCAACTCGGCTTTAATTATACTGTTGAGGTTCATTCTATTTTCTGCGTATATGCAGTATGCACTAGGTGGAAGGATGGTATCTGTTCCATAATATTGTGATTGTAGTTCCAGCGAACCAATAGTTCTTTTAATAGCCATTGACTGTAGTTTTTTTGATAGCTATTGACTGTTGGTTGGATATGTGCACTGGAAAAGGTTAATGATTTGTGAATATTATTTTGATGATATCAAGCCTTTTATAAAGCACCTGCTGCTTCAATCCTTCGAGGTTGGAGGCCCTAGTCGCCAAGGGAGTGAAGTGGAAAGGGCCACTATGACATGGGGAGGGAGGATTAGGTGGAAAGGTAGATGTAGCCATGTAGGTTACCATATATAAAAGCAAGAAAAGTATCCTTGACAATTCGCATACTAATGACTGCATTATTGCAAGGCTAAGAAATGGTAAGCAATAGGGTCTAAAACAGTTATTCCTTATCAATTTGTCAAGAATTTATCTGAATCAACTATTGCCACATATGACAACTATTAGTTATCAAAAATGACAAACTATTAATGTTATACAGGTTTTTCTTTAAGCTACGTGATCTTGCAGATCTAATGCCTGAAATGTGAAATGAGTACATTACACTATCTCTAGTCGCAAGTTTCTGAGTGGGTTGTATTAGCTTGACTGGATTATTTTATTTCTCGAAATTTTCCTATGTATAGATCATCTAGTATTCATGGTTAAATATGTTAGCTATTATTCCAAGGTTCTATTTAAGTTAATTCCAGCCTGGAATTGCCTGTTATGGATACAGGAATCTAATGCCAATTCCAATCAGTGGATCATTTTAGTAGGTGCTTCATCAAATAGGCTTAAATCATTAATTAACTTGTCGTGCAAATTCAGAACTAAAATTATGTGGCAAGGTTGGTCTCCAGTATGTTGCCCTTTCCACTATCAGCTCTTTTTTTTAGTAAGTACTTCAATTAAAAAACAAATCCAAGACATAGGAGTGAGGTTTTTACCCTGTGCACACCCAAAGGGTAGCGTCTGCGGGTTTCCCTTGCCATTTTTTTTAAAAAAAACAGTACCAAGATGGTACTGCAGCTTTCTCTGGATCATACTACATCATTGACCTAGACCATCTTTATTTTTATGGCAACACAAAATATCAGCAGTCTTTCGGACACAACTTCTTTACCTCACACAAGGTAGGGGTAAGGTCTGCATCACACAACCTCTCTATCTCTGACTTACACTAGGTTTGTTGTTTTTGTTGTGCAACTGGAACTGGAGAAACAGTTGTCAGAAGATTTGTATATAAGATAAATCTCCCAAGTATGCAAGGGTATTTTGTTGTTGCTGCACGGAGAGTAGATAGCTTACAGTTTCTGCCTTACAAAATCCGGAAAAACAATGTAAAAGTAGCCTTTAAGCAACTACTTGCAAGCCTTTGCTTGTGCACAAGACATGCAAAGTTCCAGAAAATTACAAGTACTAAAAATATATGCAAATATAATAGTATGTTTACTGGTTGACACTGGTGTATTTAGCAGTTTCACCCTCTCCTTTTTTACTTGGTTCACTTTGCTCCGCCTTTTCCTGATATTGTTTGTATTTTTTCACGTGATATGTTTTTAGTTGGTATTACCATTAACATTTTTCATGTCACTTTGCTGTAATAGCGTTCGGTGAGGAACTGCTTCATCAGAGGATCAGTGGTGAGATACGTCCAGTTACCTCCAGACGGAGTCGACATAGAGCTGCTTCATGATGCTACGAGGAGAGAAGCTCGTGGTGGCTAAAAGCCTAAAATTTGAGACCTTCAAAAGCGGATGTACTTTTAAACTTTTGAGTGGGTCAATCAGCATGTACTGATTTGTTTTGTTAAATGTAATTTTAGATGCTATTGCATGCAGTGCTTTGTATTCCTGCTGTTACTCCTCTCCATTTCAACCTAACTGTGTGGTGAAGCCTTGGATATGAATGTCTGGGACTC</genome_strand>
        <mrna_strand>AAATG..........................................................................................................................................................................................................................TTGTTTTTCTCATACTTCAAGGACATGGTGGGCAGAGAAGTGACAGTGGAACTGAAGAATGATTTGGCTATCCGAGGTACACTCCATTCAGTCGATCAGTATCTCAACATTAAGCTCGAAAACACAAGGGTCGTTGATGAAGACAAGTACCCTCACATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCGGTGAGGAACTGCTTCATCAGAGGATCAGTGGTGAGATACGTCCAGTTACCTCCAGACGGAGTCGACATAGAGCTGCTTCATGATGCTACGAGGAGAGAAGCTCGTGGTGGCTAAAAGCCTAAAATTTGAGACCTTCAAAAGCGGATGTACTTTTAAACTTTTGAGTGGGTCAATCAGCATGTACTGATTTGTTTTGTTAAATGTAATTTTAGATGCTATTGCATGCAGTGCTTTGTATTCCTGCTGTTACTCCTCTCCATTTCAACCTAACTGTGTGGTGAAGCCTTGGATATGAATGTCTGGGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304185" ref_strand="+" ref_description="SGN-E304185 [cLEX-6-K11]">
      <seq>attgagtgtctctgaaattgggagttttgtccggtgaatttgaaactaaaggcatcattcatcagttttgtccggtgaattggagttatttctggcagctgaagcccgaaaaacgtgtgaactgacgagctttcccatagaaatagaaaatgttgtttttctcatacttcaaggacatggtgggcagagaagtgacagtggaactgaagaatgatttggctatccgaggtacactccattcagtcgatcagtatctcaacattaagctcgaaaacacaagggtcgttgatgaagacaagtaccctcacatgcgttcggtgaggaactgcttcatcagaggatcagtggtgagatacgtccagttacctccagacggagtcgacatagagctgcttcatgatgctacgaggagagaagctcgtggtggctaaaagcctaaaatttgagaccttcaaaagcggatgtacttttaaacttttgagtgggtcaatcagcatgtactgatttgttttgttaaatgtaattttagatgctattgcatgcagtgctttgtattcctgctgttactcctctccatttcaacctaactgtgtggtgaagccttggatatgaatgtctgggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112586" stop="108511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112286" g_stop="112200" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112199" i_stop="111558" i_length="642">
            <donor d_prob="0.753" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111557" g_stop="111493" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="152" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111492" i_stop="111275" i_length="218">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111274" g_stop="111116" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="311" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111115" i_stop="109124" i_length="1992">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109123" g_stop="108811" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="624" r_length="313" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E304185" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112286" e_stop="112200"/>
          <exon e_start="111557" e_stop="111493"/>
          <exon e_start="111274" e_stop="111116"/>
          <exon e_start="109123" e_stop="108811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAGTGTCTCTGAAATTGGGAGTTTTGTCCGGTGAATTTGAAACTAAAGGCATCATTCATCAGTTTTGTCCGGTGAATTGGAGTTGTAAGCTGCCCTTTTCCTATCTCTCTCTCGCACTCTCTTTTCTACTGCTGCCGATGCTTGTTTCACCTTCACACCAAAACCCTAGTCCTTCTTTTTCATAGAGCGAGTACGATTTTTACTATTATTTGTTGTTGTTGTGTTTATATGTATAAATATAGCCTTACCTTCAATTTATCATTGTTTTATGTGATTCTAGTTTGCTTTCCATTTGAGGTGTTCCTTTGTGGTTATTTCTGTTTATGAAAACAAAGTTTACTTTCCATTTGAGGTGTTCCTTTGTGGTTATTTCTGTTAATGAAAACAAAGCTGGAAAAATTATTTGTTTTAATCAGCTATGGCCAGAATTTGGGATGAGAGAACTTGACTTTCAAGTCATTTACCAATTCCCTTTTTCAATTGATTCAAATTGCTCCTTAATTCAAATAAAGATATTCAAACATGTGTTTGAGTTTTAAGATTAATATGCTAGAGAATTTGATAGGTAATATCCATGTAAATGATACTCCCTCCTTTGAATGTATTAGTGAATTTGAATTATTAAAACTTGTTAGTTTTGTGTTGAAATGGAATATTATGATATTAATTGGAATCATGAAAGTTCTAACATTTTTGTTACTTAACGTATACTGTATGAAATGTCAGATTTCTGGCAGCTGAAGCCCGAAAAACGTGTGAACTGACGAGCTTTCCCATAGAAATAGAAAATGGTAATGTTACTCTATCCTTTTCCTCTTGATGTTTATTCCTCACTATTCAGTCTAATCCCTTTAATATCTATCTCCATTGAGTTTTTTAATGAAAAAAGAGATCTTCTGATTGTTGTAGTTTGGAAATTCCGATTCCTTCATGAAAATCAATCGTTTTCATAGCTTTTATATTTTTAACTTGTATCTAACTGAGTTTTCTCCCATCCCACTCTTTCCAGTTGTTTTTCTCATACTTCAAGGACATGGTGGGCAGAGAAGTGACAGTGGAACTGAAGAATGATTTGGCTATCCGAGGTACACTCCATTCAGTCGATCAGTATCTCAACATTAAGCTCGAAAACACAAGGGTCGTTGATGAAGACAAGTACCCTCACATGGTAATTGCATTCCCTTTTCTCCTTCATTCGGGTTTTGGTGGGTGGATAAAGTAATGCTTCTTGATTAGGAATGCTAACTTCTGTACTTTTATATACAATGGTTGTATTGTTAAGCATGCTAGAGTTCTCTTAGGCCTCTGACAATTTTGGGTGAGTAAGTTAACCACTAGGGAATTCAGTAGTGTTCACTGCTCTTTCTTCCATATCTTTACTATACTTGTTTCTTATTTCTGCTGTTGATTTCTTTTAGGAAGTGATATTCAGTTATTCACTGCTCTCTCTCTCTCTCTCTACACACACATATATTCAAGAATTGATATGCAACTCGGCTTTAATTATACTGTTGAGGTTCATTCTATTTTCTGCGTATATGCAGTATGCACTAGGTGGAAGGATGGTATCTGTTCCATAATATTGTGATTGTAGTTCCAGCGAACCAATAGTTCTTTTAATAGCCATTGACTGTAGTTTTTTTGATAGCTATTGACTGTTGGTTGGATATGTGCACTGGAAAAGGTTAATGATTTGTGAATATTATTTTGATGATATCAAGCCTTTTATAAAGCACCTGCTGCTTCAATCCTTCGAGGTTGGAGGCCCTAGTCGCCAAGGGAGTGAAGTGGAAAGGGCCACTATGACATGGGGAGGGAGGATTAGGTGGAAAGGTAGATGTAGCCATGTAGGTTACCATATATAAAAGCAAGAAAAGTATCCTTGACAATTCGCATACTAATGACTGCATTATTGCAAGGCTAAGAAATGGTAAGCAATAGGGTCTAAAACAGTTATTCCTTATCAATTTGTCAAGAATTTATCTGAATCAACTATTGCCACATATGACAACTATTAGTTATCAAAAATGACAAACTATTAATGTTATACAGGTTTTTCTTTAAGCTACGTGATCTTGCAGATCTAATGCCTGAAATGTGAAATGAGTACATTACACTATCTCTAGTCGCAAGTTTCTGAGTGGGTTGTATTAGCTTGACTGGATTATTTTATTTCTCGAAATTTTCCTATGTATAGATCATCTAGTATTCATGGTTAAATATGTTAGCTATTATTCCAAGGTTCTATTTAAGTTAATTCCAGCCTGGAATTGCCTGTTATGGATACAGGAATCTAATGCCAATTCCAATCAGTGGATCATTTTAGTAGGTGCTTCATCAAATAGGCTTAAATCATTAATTAACTTGTCGTGCAAATTCAGAACTAAAATTATGTGGCAAGGTTGGTCTCCAGTATGTTGCCCTTTCCACTATCAGCTCTTTTTTTTAGTAAGTACTTCAATTAAAAAACAAATCCAAGACATAGGAGTGAGGTTTTTACCCTGTGCACACCCAAAGGGTAGCGTCTGCGGGTTTCCCTTGCCATTTTTTTTAAAAAAAACAGTACCAAGATGGTACTGCAGCTTTCTCTGGATCATACTACATCATTGACCTAGACCATCTTTATTTTTATGGCAACACAAAATATCAGCAGTCTTTCGGACACAACTTCTTTACCTCACACAAGGTAGGGGTAAGGTCTGCATCACACAACCTCTCTATCTCTGACTTACACTAGGTTTGTTGTTTTTGTTGTGCAACTGGAACTGGAGAAACAGTTGTCAGAAGATTTGTATATAAGATAAATCTCCCAAGTATGCAAGGGTATTTTGTTGTTGCTGCACGGAGAGTAGATAGCTTACAGTTTCTGCCTTACAAAATCCGGAAAAACAATGTAAAAGTAGCCTTTAAGCAACTACTTGCAAGCCTTTGCTTGTGCACAAGACATGCAAAGTTCCAGAAAATTACAAGTACTAAAAATATATGCAAATATAATAGTATGTTTACTGGTTGACACTGGTGTATTTAGCAGTTTCACCCTCTCCTTTTTTACTTGGTTCACTTTGCTCCGCCTTTTCCTGATATTGTTTGTATTTTTTCACGTGATATGTTTTTAGTTGGTATTACCATTAACATTTTTCATGTCACTTTGCTGTAATAGCGTTCGGTGAGGAACTGCTTCATCAGAGGATCAGTGGTGAGATACGTCCAGTTACCTCCAGACGGAGTCGACATAGAGCTGCTTCATGATGCTACGAGGAGAGAAGCTCGTGGTGGCTAAAAGCCTAAAATTTGAGACCTTCAAAAGCGGATGTACTTTTAAACTTTTGAGTGGGTCAATCAGCATGTACTGATTTGTTTTGTTAAATGTAATTTTAGATGCTATTGCATGCAGTGCTTTGTATTCCTGCTGTTACTCCTCTCCATTTCAACCTAACTGTGTGGTGAAGCCTTGGATATGAATGTCTGGGACT</genome_strand>
        <mrna_strand>ATTGAGTGTCTCTGAAATTGGGAGTTTTGTCCGGTGAATTTGAAACTAAAGGCATCATTCATCAGTTTTGTCCGGTGAATTGGAGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTGGCAGCTGAAGCCCGAAAAACGTGTGAACTGACGAGCTTTCCCATAGAAATAGAAAATG..........................................................................................................................................................................................................................TTGTTTTTCTCATACTTCAAGGACATGGTGGGCAGAGAAGTGACAGTGGAACTGAAGAATGATTTGGCTATCCGAGGTACACTCCATTCAGTCGATCAGTATCTCAACATTAAGCTCGAAAACACAAGGGTCGTTGATGAAGACAAGTACCCTCACATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCGGTGAGGAACTGCTTCATCAGAGGATCAGTGGTGAGATACGTCCAGTTACCTCCAGACGGAGTCGACATAGAGCTGCTTCATGATGCTACGAGGAGAGAAGCTCGTGGTGGCTAAAAGCCTAAAATTTGAGACCTTCAAAAGCGGATGTACTTTTAAACTTTTGAGTGGGTCAATCAGCATGTACTGATTTGTTTTGTTAAATGTAATTTTAGATGCTATTGCATGCAGTGCTTTGTATTCCTGCTGTTACTCCTCTCCATTTCAACCTAACTGTGTGGTGAAGCCTTGGATATGAATGTCTGGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728002" ref_strand="+" ref_description="SGN-E728002 [LA16BF03]">
      <seq>ctctttctcaattgagtgtctctgaaattgggagatttgtccggtgaatttgaaactatgggcatcattcatcattgttgtccggggaattggagtcatttctggcatctgaagcccgaaaaacgtgtgaactgacgagctttcccatagaaatagaacatgtagtttttctcatacttcaaggacatggtgggcagagaagtgacaggggaactgaagaatgatttggctatccgaggtacactccattcactcgatcagtatctcaacattgaactcgaaaacacgagggtcgttgatgaaaacaagtaccctcacatgcgttcggtgaggaactgcttcatcagaggatcgctggtgacatacatccatttacctccatacggagtcgacatatagctgcttcatgatgctacgaggacagaatctcgtggtggctaaaagcctacaatttgacaccttcagaagcggatgtacttttaaacttttgagtgggtcaatcagcatgtactgatttgttgtgctaaatgcaattttagatgctattgcatgcaatgctctgaattcctgctgttactcctctccatttcaacctaactgtgtggtgaagccttggatatgaatggatttttttttcaaaaaaaaaaaaacttctcggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112596" stop="108520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112287" g_stop="112200" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="97" r_length="88" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112199" i_stop="111558" i_length="642">
            <donor d_prob="0.753" d_score="0.88"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111557" g_stop="111493" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="162" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111492" i_stop="111275" i_length="218">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.943" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111274" g_stop="111116" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="321" r_length="159" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111115" i_stop="109124" i_length="1992">
            <donor d_prob="0.907" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109123" g_stop="108821" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="624" r_length="303" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="638" polyA_stop="651"/>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E728002" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112287" e_stop="112200"/>
          <exon e_start="111557" e_stop="111493"/>
          <exon e_start="111274" e_stop="111116"/>
          <exon e_start="109123" e_stop="108821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGAGTGTCTCTGAAATTGGGAGTTTTGTCCGGTGAATTTGAAACTAAAGGCATCATTCATCAGTTTTGTCCGGTGAATTGGAGTTGTAAGCTGCCCTTTTCCTATCTCTCTCTCGCACTCTCTTTTCTACTGCTGCCGATGCTTGTTTCACCTTCACACCAAAACCCTAGTCCTTCTTTTTCATAGAGCGAGTACGATTTTTACTATTATTTGTTGTTGTTGTGTTTATATGTATAAATATAGCCTTACCTTCAATTTATCATTGTTTTATGTGATTCTAGTTTGCTTTCCATTTGAGGTGTTCCTTTGTGGTTATTTCTGTTTATGAAAACAAAGTTTACTTTCCATTTGAGGTGTTCCTTTGTGGTTATTTCTGTTAATGAAAACAAAGCTGGAAAAATTATTTGTTTTAATCAGCTATGGCCAGAATTTGGGATGAGAGAACTTGACTTTCAAGTCATTTACCAATTCCCTTTTTCAATTGATTCAAATTGCTCCTTAATTCAAATAAAGATATTCAAACATGTGTTTGAGTTTTAAGATTAATATGCTAGAGAATTTGATAGGTAATATCCATGTAAATGATACTCCCTCCTTTGAATGTATTAGTGAATTTGAATTATTAAAACTTGTTAGTTTTGTGTTGAAATGGAATATTATGATATTAATTGGAATCATGAAAGTTCTAACATTTTTGTTACTTAACGTATACTGTATGAAATGTCAGATTTCTGGCAGCTGAAGCCCGAAAAACGTGTGAACTGACGAGCTTTCCCATAGAAATAGAAAATGGTAATGTTACTCTATCCTTTTCCTCTTGATGTTTATTCCTCACTATTCAGTCTAATCCCTTTAATATCTATCTCCATTGAGTTTTTTAATGAAAAAAGAGATCTTCTGATTGTTGTAGTTTGGAAATTCCGATTCCTTCATGAAAATCAATCGTTTTCATAGCTTTTATATTTTTAACTTGTATCTAACTGAGTTTTCTCCCATCCCACTCTTTCCAGTTGTTTTTCTCATACTTCAAGGACATGGTGGGCAGAGAAGTGACAGTGGAACTGAAGAATGATTTGGCTATCCGAGGTACACTCCATTCAGTCGATCAGTATCTCAACATTAAGCTCGAAAACACAAGGGTCGTTGATGAAGACAAGTACCCTCACATGGTAATTGCATTCCCTTTTCTCCTTCATTCGGGTTTTGGTGGGTGGATAAAGTAATGCTTCTTGATTAGGAATGCTAACTTCTGTACTTTTATATACAATGGTTGTATTGTTAAGCATGCTAGAGTTCTCTTAGGCCTCTGACAATTTTGGGTGAGTAAGTTAACCACTAGGGAATTCAGTAGTGTTCACTGCTCTTTCTTCCATATCTTTACTATACTTGTTTCTTATTTCTGCTGTTGATTTCTTTTAGGAAGTGATATTCAGTTATTCACTGCTCTCTCTCTCTCTCTCTACACACACATATATTCAAGAATTGATATGCAACTCGGCTTTAATTATACTGTTGAGGTTCATTCTATTTTCTGCGTATATGCAGTATGCACTAGGTGGAAGGATGGTATCTGTTCCATAATATTGTGATTGTAGTTCCAGCGAACCAATAGTTCTTTTAATAGCCATTGACTGTAGTTTTTTTGATAGCTATTGACTGTTGGTTGGATATGTGCACTGGAAAAGGTTAATGATTTGTGAATATTATTTTGATGATATCAAGCCTTTTATAAAGCACCTGCTGCTTCAATCCTTCGAGGTTGGAGGCCCTAGTCGCCAAGGGAGTGAAGTGGAAAGGGCCACTATGACATGGGGAGGGAGGATTAGGTGGAAAGGTAGATGTAGCCATGTAGGTTACCATATATAAAAGCAAGAAAAGTATCCTTGACAATTCGCATACTAATGACTGCATTATTGCAAGGCTAAGAAATGGTAAGCAATAGGGTCTAAAACAGTTATTCCTTATCAATTTGTCAAGAATTTATCTGAATCAACTATTGCCACATATGACAACTATTAGTTATCAAAAATGACAAACTATTAATGTTATACAGGTTTTTCTTTAAGCTACGTGATCTTGCAGATCTAATGCCTGAAATGTGAAATGAGTACATTACACTATCTCTAGTCGCAAGTTTCTGAGTGGGTTGTATTAGCTTGACTGGATTATTTTATTTCTCGAAATTTTCCTATGTATAGATCATCTAGTATTCATGGTTAAATATGTTAGCTATTATTCCAAGGTTCTATTTAAGTTAATTCCAGCCTGGAATTGCCTGTTATGGATACAGGAATCTAATGCCAATTCCAATCAGTGGATCATTTTAGTAGGTGCTTCATCAAATAGGCTTAAATCATTAATTAACTTGTCGTGCAAATTCAGAACTAAAATTATGTGGCAAGGTTGGTCTCCAGTATGTTGCCCTTTCCACTATCAGCTCTTTTTTTTAGTAAGTACTTCAATTAAAAAACAAATCCAAGACATAGGAGTGAGGTTTTTACCCTGTGCACACCCAAAGGGTAGCGTCTGCGGGTTTCCCTTGCCATTTTTTTTAAAAAAAACAGTACCAAGATGGTACTGCAGCTTTCTCTGGATCATACTACATCATTGACCTAGACCATCTTTATTTTTATGGCAACACAAAATATCAGCAGTCTTTCGGACACAACTTCTTTACCTCACACAAGGTAGGGGTAAGGTCTGCATCACACAACCTCTCTATCTCTGACTTACACTAGGTTTGTTGTTTTTGTTGTGCAACTGGAACTGGAGAAACAGTTGTCAGAAGATTTGTATATAAGATAAATCTCCCAAGTATGCAAGGGTATTTTGTTGTTGCTGCACGGAGAGTAGATAGCTTACAGTTTCTGCCTTACAAAATCCGGAAAAACAATGTAAAAGTAGCCTTTAAGCAACTACTTGCAAGCCTTTGCTTGTGCACAAGACATGCAAAGTTCCAGAAAATTACAAGTACTAAAAATATATGCAAATATAATAGTATGTTTACTGGTTGACACTGGTGTATTTAGCAGTTTCACCCTCTCCTTTTTTACTTGGTTCACTTTGCTCCGCCTTTTCCTGATATTGTTTGTATTTTTTCACGTGATATGTTTTTAGTTGGTATTACCATTAACATTTTTCATGTCACTTTGCTGTAATAGCGTTCGGTGAGGAACTGCTTCATCAGAGGATCAGTGGTGAGATACGTCCAGTTACCTCCAGACGGAGTCGACATAGAGCTGCTTCATGATGCTACGAGGAGAGAAGCTCGTGGTGGCTAAAAGCCTAAAATTTGAGACCTTCAAAAGCGGATGTACTTTTAAACTTTTGAGTGGGTCAATCAGCATGTACTGATTTGTTTTGTTAAATGTAATTTTAGATGCTATTGCATGCAGTGCTTTGTATTCCTGCTGTTACTCCTCTCCATTTCAACCTAACTGTGTGGTGAAGCCTTGGATATGAAT</genome_strand>
        <mrna_strand>AATTGAGTGTCTCTGAAATTGGGAGATTTGTCCGGTGAATTTGAAACTATGGGCATCATTCATCATTGTTGTCCGGGGAATTGGAGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTGGCATCTGAAGCCCGAAAAACGTGTGAACTGACGAGCTTTCCCATAGAAATAGAACATG..........................................................................................................................................................................................................................TAGTTTTTCTCATACTTCAAGGACATGGTGGGCAGAGAAGTGACAGGGGAACTGAAGAATGATTTGGCTATCCGAGGTACACTCCATTCACTCGATCAGTATCTCAACATTGAACTCGAAAACACGAGGGTCGTTGATGAAAACAAGTACCCTCACATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCGGTGAGGAACTGCTTCATCAGAGGATCGCTGGTGACATACATCCATTTACCTCCATACGGAGTCGACATATAGCTGCTTCATGATGCTACGAGGACAGAATCTCGTGGTGGCTAAAAGCCTACAATTTGACACCTTCAGAAGCGGATGTACTTTTAAACTTTTGAGTGGGTCAATCAGCATGTACTGATTTGTTGTGCTAAATGCAATTTTAGATGCTATTGCATGCAATGCTCTGAATTCCTGCTGTTACTCCTCTCCATTTCAACCTAACTGTGTGGTGAAGCCTTGGATATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560665" ref_strand="+" ref_description="SGN-E560665 [20353]">
      <seq>gaaactaaaggcagtaggcaccattctcattcggcggatatctgttttctccggtgaattggagttatttctggcagctgaagccccgaaagacgtgcgaactaacgagattttcccatagaaatagaaaatgttgtttttctcatacttcaaggacatggtgggcagagaagtgacagtggaactgaagaatgatttggctatccgaggcacactccattcagtcgatcagtatctcaacattaagctcgaaaacacaagtgtcgttgatgaagacaagtaccctcacatgcgttcggtgaggaactgcttcatcagaggatcagtggtgagatacgtccagttacctccagatggagtcgacatagagctgcttcatgatgctacgaggagagaagctcgtggtggctaaaagcctaaaatctgagaccttcaaaagtggatgtacttttaaacttttgagtgggtaaatcaggatgtactgattttctttgttaaatgtatttttagatgctattgcatgcagtgctttgtattctgctgtacctcctctccatttttacctaactgtgtggtgacagccttggatgggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112526" stop="108521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112221" g_stop="112200" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="66" r_length="22" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112199" i_stop="111558" i_length="642">
            <donor d_prob="0.753" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111557" g_stop="111493" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="133" r_length="67" r_score="0.877"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111492" i_stop="111275" i_length="218">
            <donor d_prob="0.998" d_score="0.83"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111274" g_stop="111116" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="292" r_length="159" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111115" i_stop="109124" i_length="1992">
            <donor d_prob="0.907" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109123" g_stop="108821" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="595" r_length="303" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E560665" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112221" e_stop="112200"/>
          <exon e_start="111557" e_stop="111493"/>
          <exon e_start="111274" e_stop="111116"/>
          <exon e_start="109123" e_stop="108821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTCCGGTGAATTGGAGTTGTAAGCTGCCCTTTTCCTATCTCTCTCTCGCACTCTCTTTTCTACTGCTGCCGATGCTTGTTTCACCTTCACACCAAAACCCTAGTCCTTCTTTTTCATAGAGCGAGTACGATTTTTACTATTATTTGTTGTTGTTGTGTTTATATGTATAAATATAGCCTTACCTTCAATTTATCATTGTTTTATGTGATTCTAGTTTGCTTTCCATTTGAGGTGTTCCTTTGTGGTTATTTCTGTTTATGAAAACAAAGTTTACTTTCCATTTGAGGTGTTCCTTTGTGGTTATTTCTGTTAATGAAAACAAAGCTGGAAAAATTATTTGTTTTAATCAGCTATGGCCAGAATTTGGGATGAGAGAACTTGACTTTCAAGTCATTTACCAATTCCCTTTTTCAATTGATTCAAATTGCTCCTTAATTCAAATAAAGATATTCAAACATGTGTTTGAGTTTTAAGATTAATATGCTAGAGAATTTGATAGGTAATATCCATGTAAATGATACTCCCTCCTTTGAATGTATTAGTGAATTTGAATTATTAAAACTTGTTAGTTTTGTGTTGAAATGGAATATTATGATATTAATTGGAATCATGAAAGTTCTAACATTTTTGTTACTTAACGTATACTGTATGAAATGTCAGATTTCTGGCAGCTGAAG-CCCGAAAAACGTGTGAACTGACGAG-CTTTCCCATAGAAATAGAAAATGGTAATGTTACTCTATCCTTTTCCTCTTGATGTTTATTCCTCACTATTCAGTCTAATCCCTTTAATATCTATCTCCATTGAGTTTTTTAATGAAAAAAGAGATCTTCTGATTGTTGTAGTTTGGAAATTCCGATTCCTTCATGAAAATCAATCGTTTTCATAGCTTTTATATTTTTAACTTGTATCTAACTGAGTTTTCTCCCATCCCACTCTTTCCAGTTGTTTTTCTCATACTTCAAGGACATGGTGGGCAGAGAAGTGACAGTGGAACTGAAGAATGATTTGGCTATCCGAGGTACACTCCATTCAGTCGATCAGTATCTCAACATTAAGCTCGAAAACACAAGGGTCGTTGATGAAGACAAGTACCCTCACATGGTAATTGCATTCCCTTTTCTCCTTCATTCGGGTTTTGGTGGGTGGATAAAGTAATGCTTCTTGATTAGGAATGCTAACTTCTGTACTTTTATATACAATGGTTGTATTGTTAAGCATGCTAGAGTTCTCTTAGGCCTCTGACAATTTTGGGTGAGTAAGTTAACCACTAGGGAATTCAGTAGTGTTCACTGCTCTTTCTTCCATATCTTTACTATACTTGTTTCTTATTTCTGCTGTTGATTTCTTTTAGGAAGTGATATTCAGTTATTCACTGCTCTCTCTCTCTCTCTCTACACACACATATATTCAAGAATTGATATGCAACTCGGCTTTAATTATACTGTTGAGGTTCATTCTATTTTCTGCGTATATGCAGTATGCACTAGGTGGAAGGATGGTATCTGTTCCATAATATTGTGATTGTAGTTCCAGCGAACCAATAGTTCTTTTAATAGCCATTGACTGTAGTTTTTTTGATAGCTATTGACTGTTGGTTGGATATGTGCACTGGAAAAGGTTAATGATTTGTGAATATTATTTTGATGATATCAAGCCTTTTATAAAGCACCTGCTGCTTCAATCCTTCGAGGTTGGAGGCCCTAGTCGCCAAGGGAGTGAAGTGGAAAGGGCCACTATGACATGGGGAGGGAGGATTAGGTGGAAAGGTAGATGTAGCCATGTAGGTTACCATATATAAAAGCAAGAAAAGTATCCTTGACAATTCGCATACTAATGACTGCATTATTGCAAGGCTAAGAAATGGTAAGCAATAGGGTCTAAAACAGTTATTCCTTATCAATTTGTCAAGAATTTATCTGAATCAACTATTGCCACATATGACAACTATTAGTTATCAAAAATGACAAACTATTAATGTTATACAGGTTTTTCTTTAAGCTACGTGATCTTGCAGATCTAATGCCTGAAATGTGAAATGAGTACATTACACTATCTCTAGTCGCAAGTTTCTGAGTGGGTTGTATTAGCTTGACTGGATTATTTTATTTCTCGAAATTTTCCTATGTATAGATCATCTAGTATTCATGGTTAAATATGTTAGCTATTATTCCAAGGTTCTATTTAAGTTAATTCCAGCCTGGAATTGCCTGTTATGGATACAGGAATCTAATGCCAATTCCAATCAGTGGATCATTTTAGTAGGTGCTTCATCAAATAGGCTTAAATCATTAATTAACTTGTCGTGCAAATTCAGAACTAAAATTATGTGGCAAGGTTGGTCTCCAGTATGTTGCCCTTTCCACTATCAGCTCTTTTTTTTAGTAAGTACTTCAATTAAAAAACAAATCCAAGACATAGGAGTGAGGTTTTTACCCTGTGCACACCCAAAGGGTAGCGTCTGCGGGTTTCCCTTGCCATTTTTTTTAAAAAAAACAGTACCAAGATGGTACTGCAGCTTTCTCTGGATCATACTACATCATTGACCTAGACCATCTTTATTTTTATGGCAACACAAAATATCAGCAGTCTTTCGGACACAACTTCTTTACCTCACACAAGGTAGGGGTAAGGTCTGCATCACACAACCTCTCTATCTCTGACTTACACTAGGTTTGTTGTTTTTGTTGTGCAACTGGAACTGGAGAAACAGTTGTCAGAAGATTTGTATATAAGATAAATCTCCCAAGTATGCAAGGGTATTTTGTTGTTGCTGCACGGAGAGTAGATAGCTTACAGTTTCTGCCTTACAAAATCCGGAAAAACAATGTAAAAGTAGCCTTTAAGCAACTACTTGCAAGCCTTTGCTTGTGCACAAGACATGCAAAGTTCCAGAAAATTACAAGTACTAAAAATATATGCAAATATAATAGTATGTTTACTGGTTGACACTGGTGTATTTAGCAGTTTCACCCTCTCCTTTTTTACTTGGTTCACTTTGCTCCGCCTTTTCCTGATATTGTTTGTATTTTTTCACGTGATATGTTTTTAGTTGGTATTACCATTAACATTTTTCATGTCACTTTGCTGTAATAGCGTTCGGTGAGGAACTGCTTCATCAGAGGATCAGTGGTGAGATACGTCCAGTTACCTCCAGACGGAGTCGACATAGAGCTGCTTCATGATGCTACGAGGAGAGAAGCTCGTGGTGGCTAAAAGCCTAAAATTTGAGACCTTCAAAAGCGGATGTACTTTTAAACTTTTGAGTGGGTCAATCAGCATGTACTGATTTGTTTTGTTAAATGTAATTTTAGATGCTATTGCATGCAGTGCTTTGTATTCCTGCTGTTACTCCTCTCCATTTCAACCTAACTGTGTGGTGA-AGCCTTGGATATGAAT</genome_strand>
        <mrna_strand>TTTTCTCCGGTGAATTGGAGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTGGCAGCTGAAGCCCCGAAAGACGTGCGAACTAACGAGATTTTCCCATAGAAATAGAAAATG..........................................................................................................................................................................................................................TTGTTTTTCTCATACTTCAAGGACATGGTGGGCAGAGAAGTGACAGTGGAACTGAAGAATGATTTGGCTATCCGAGGCACACTCCATTCAGTCGATCAGTATCTCAACATTAAGCTCGAAAACACAAGTGTCGTTGATGAAGACAAGTACCCTCACATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCGGTGAGGAACTGCTTCATCAGAGGATCAGTGGTGAGATACGTCCAGTTACCTCCAGATGGAGTCGACATAGAGCTGCTTCATGATGCTACGAGGAGAGAAGCTCGTGGTGGCTAAAAGCCTAAAATCTGAGACCTTCAAAAGTGGATGTACTTTTAAACTTTTGAGTGGGTAAATCAGGATGTACTGATTTTCTTTGTTAAATGTATTTTTAGATGCTATTGCATGCAGTGCTTTGTATT-CTGCTGTACCTCCTCTCCATTTTTACCTAACTGTGTGGTGACAGCCTTGGATGGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732883" ref_strand="+" ref_description="SGN-E732883 [LB03BF03]">
      <seq>cgcttttccagaattgagtgtctctgaaattgggagttttgtccggtgaatttgaaactaaaggcatcattcatcagttttgtccggtgaattggagttatttctggcagctgaagcccgaaaaacgtgtgaactgacgagctttcccatagaaatagaaaatgttgtttttctcatacttcaaggacatggtgggcagagaagtgacagtggaactgaagaatgatttggctatccgaggtacactccattcagtcgatcagtatctcaacattaagctcgaaaacacaagggtcgttgatgaagacaagtaccctcacatgcgttcggtgaggaactgcttcatcagaggatcagtggtgagatacgtccagttacctccagacggagtcgacatagagctgcttcatgatgctacgaggagagaagctcgtggtggctaaaagcctaaaatttgagaccttcaaaagcggatgtacttttaaacttttgagtgggtcaatcagcatgtactgatttgttttgttaaatgtaattttagatgctattgcatgcagtgctttgtattcctgctgttactcctctccatttcaacctaactgtgtggtgaagccttggatatgaaaanaaaaaaaaaaaaaaaaaaaaaaanccctcgggggggggccgggaccccattccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112596" stop="108522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112298" g_stop="112200" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112199" i_stop="111558" i_length="642">
            <donor d_prob="0.753" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111557" g_stop="111493" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="164" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111492" i_stop="111275" i_length="218">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111274" g_stop="111116" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="323" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111115" i_stop="109124" i_length="1992">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109123" g_stop="108823" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="624" r_length="301" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="634" polyA_stop="652"/>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E732883" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112298" e_stop="112200"/>
          <exon e_start="111557" e_stop="111493"/>
          <exon e_start="111274" e_stop="111116"/>
          <exon e_start="109123" e_stop="108823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTTTCCAGAATTGAGTGTCTCTGAAATTGGGAGTTTTGTCCGGTGAATTTGAAACTAAAGGCATCATTCATCAGTTTTGTCCGGTGAATTGGAGTTGTAAGCTGCCCTTTTCCTATCTCTCTCTCGCACTCTCTTTTCTACTGCTGCCGATGCTTGTTTCACCTTCACACCAAAACCCTAGTCCTTCTTTTTCATAGAGCGAGTACGATTTTTACTATTATTTGTTGTTGTTGTGTTTATATGTATAAATATAGCCTTACCTTCAATTTATCATTGTTTTATGTGATTCTAGTTTGCTTTCCATTTGAGGTGTTCCTTTGTGGTTATTTCTGTTTATGAAAACAAAGTTTACTTTCCATTTGAGGTGTTCCTTTGTGGTTATTTCTGTTAATGAAAACAAAGCTGGAAAAATTATTTGTTTTAATCAGCTATGGCCAGAATTTGGGATGAGAGAACTTGACTTTCAAGTCATTTACCAATTCCCTTTTTCAATTGATTCAAATTGCTCCTTAATTCAAATAAAGATATTCAAACATGTGTTTGAGTTTTAAGATTAATATGCTAGAGAATTTGATAGGTAATATCCATGTAAATGATACTCCCTCCTTTGAATGTATTAGTGAATTTGAATTATTAAAACTTGTTAGTTTTGTGTTGAAATGGAATATTATGATATTAATTGGAATCATGAAAGTTCTAACATTTTTGTTACTTAACGTATACTGTATGAAATGTCAGATTTCTGGCAGCTGAAGCCCGAAAAACGTGTGAACTGACGAGCTTTCCCATAGAAATAGAAAATGGTAATGTTACTCTATCCTTTTCCTCTTGATGTTTATTCCTCACTATTCAGTCTAATCCCTTTAATATCTATCTCCATTGAGTTTTTTAATGAAAAAAGAGATCTTCTGATTGTTGTAGTTTGGAAATTCCGATTCCTTCATGAAAATCAATCGTTTTCATAGCTTTTATATTTTTAACTTGTATCTAACTGAGTTTTCTCCCATCCCACTCTTTCCAGTTGTTTTTCTCATACTTCAAGGACATGGTGGGCAGAGAAGTGACAGTGGAACTGAAGAATGATTTGGCTATCCGAGGTACACTCCATTCAGTCGATCAGTATCTCAACATTAAGCTCGAAAACACAAGGGTCGTTGATGAAGACAAGTACCCTCACATGGTAATTGCATTCCCTTTTCTCCTTCATTCGGGTTTTGGTGGGTGGATAAAGTAATGCTTCTTGATTAGGAATGCTAACTTCTGTACTTTTATATACAATGGTTGTATTGTTAAGCATGCTAGAGTTCTCTTAGGCCTCTGACAATTTTGGGTGAGTAAGTTAACCACTAGGGAATTCAGTAGTGTTCACTGCTCTTTCTTCCATATCTTTACTATACTTGTTTCTTATTTCTGCTGTTGATTTCTTTTAGGAAGTGATATTCAGTTATTCACTGCTCTCTCTCTCTCTCTCTACACACACATATATTCAAGAATTGATATGCAACTCGGCTTTAATTATACTGTTGAGGTTCATTCTATTTTCTGCGTATATGCAGTATGCACTAGGTGGAAGGATGGTATCTGTTCCATAATATTGTGATTGTAGTTCCAGCGAACCAATAGTTCTTTTAATAGCCATTGACTGTAGTTTTTTTGATAGCTATTGACTGTTGGTTGGATATGTGCACTGGAAAAGGTTAATGATTTGTGAATATTATTTTGATGATATCAAGCCTTTTATAAAGCACCTGCTGCTTCAATCCTTCGAGGTTGGAGGCCCTAGTCGCCAAGGGAGTGAAGTGGAAAGGGCCACTATGACATGGGGAGGGAGGATTAGGTGGAAAGGTAGATGTAGCCATGTAGGTTACCATATATAAAAGCAAGAAAAGTATCCTTGACAATTCGCATACTAATGACTGCATTATTGCAAGGCTAAGAAATGGTAAGCAATAGGGTCTAAAACAGTTATTCCTTATCAATTTGTCAAGAATTTATCTGAATCAACTATTGCCACATATGACAACTATTAGTTATCAAAAATGACAAACTATTAATGTTATACAGGTTTTTCTTTAAGCTACGTGATCTTGCAGATCTAATGCCTGAAATGTGAAATGAGTACATTACACTATCTCTAGTCGCAAGTTTCTGAGTGGGTTGTATTAGCTTGACTGGATTATTTTATTTCTCGAAATTTTCCTATGTATAGATCATCTAGTATTCATGGTTAAATATGTTAGCTATTATTCCAAGGTTCTATTTAAGTTAATTCCAGCCTGGAATTGCCTGTTATGGATACAGGAATCTAATGCCAATTCCAATCAGTGGATCATTTTAGTAGGTGCTTCATCAAATAGGCTTAAATCATTAATTAACTTGTCGTGCAAATTCAGAACTAAAATTATGTGGCAAGGTTGGTCTCCAGTATGTTGCCCTTTCCACTATCAGCTCTTTTTTTTAGTAAGTACTTCAATTAAAAAACAAATCCAAGACATAGGAGTGAGGTTTTTACCCTGTGCACACCCAAAGGGTAGCGTCTGCGGGTTTCCCTTGCCATTTTTTTTAAAAAAAACAGTACCAAGATGGTACTGCAGCTTTCTCTGGATCATACTACATCATTGACCTAGACCATCTTTATTTTTATGGCAACACAAAATATCAGCAGTCTTTCGGACACAACTTCTTTACCTCACACAAGGTAGGGGTAAGGTCTGCATCACACAACCTCTCTATCTCTGACTTACACTAGGTTTGTTGTTTTTGTTGTGCAACTGGAACTGGAGAAACAGTTGTCAGAAGATTTGTATATAAGATAAATCTCCCAAGTATGCAAGGGTATTTTGTTGTTGCTGCACGGAGAGTAGATAGCTTACAGTTTCTGCCTTACAAAATCCGGAAAAACAATGTAAAAGTAGCCTTTAAGCAACTACTTGCAAGCCTTTGCTTGTGCACAAGACATGCAAAGTTCCAGAAAATTACAAGTACTAAAAATATATGCAAATATAATAGTATGTTTACTGGTTGACACTGGTGTATTTAGCAGTTTCACCCTCTCCTTTTTTACTTGGTTCACTTTGCTCCGCCTTTTCCTGATATTGTTTGTATTTTTTCACGTGATATGTTTTTAGTTGGTATTACCATTAACATTTTTCATGTCACTTTGCTGTAATAGCGTTCGGTGAGGAACTGCTTCATCAGAGGATCAGTGGTGAGATACGTCCAGTTACCTCCAGACGGAGTCGACATAGAGCTGCTTCATGATGCTACGAGGAGAGAAGCTCGTGGTGGCTAAAAGCCTAAAATTTGAGACCTTCAAAAGCGGATGTACTTTTAAACTTTTGAGTGGGTCAATCAGCATGTACTGATTTGTTTTGTTAAATGTAATTTTAGATGCTATTGCATGCAGTGCTTTGTATTCCTGCTGTTACTCCTCTCCATTTCAACCTAACTGTGTGGTGAAGCCTTGGATATGA</genome_strand>
        <mrna_strand>CGCTTTTCCAGAATTGAGTGTCTCTGAAATTGGGAGTTTTGTCCGGTGAATTTGAAACTAAAGGCATCATTCATCAGTTTTGTCCGGTGAATTGGAGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTGGCAGCTGAAGCCCGAAAAACGTGTGAACTGACGAGCTTTCCCATAGAAATAGAAAATG..........................................................................................................................................................................................................................TTGTTTTTCTCATACTTCAAGGACATGGTGGGCAGAGAAGTGACAGTGGAACTGAAGAATGATTTGGCTATCCGAGGTACACTCCATTCAGTCGATCAGTATCTCAACATTAAGCTCGAAAACACAAGGGTCGTTGATGAAGACAAGTACCCTCACATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCGGTGAGGAACTGCTTCATCAGAGGATCAGTGGTGAGATACGTCCAGTTACCTCCAGACGGAGTCGACATAGAGCTGCTTCATGATGCTACGAGGAGAGAAGCTCGTGGTGGCTAAAAGCCTAAAATTTGAGACCTTCAAAAGCGGATGTACTTTTAAACTTTTGAGTGGGTCAATCAGCATGTACTGATTTGTTTTGTTAAATGTAATTTTAGATGCTATTGCATGCAGTGCTTTGTATTCCTGCTGTTACTCCTCTCCATTTCAACCTAACTGTGTGGTGAAGCCTTGGATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E435006" ref_strand="+" ref_description="SGN-E435006 [STM-60-H12]">
      <seq>ctgaagccccgaaagacgtgcgaactaacgagatttttccatagaaatagaatatgagaagtgacagtggaactgaagaatgatttggctatccgaggcacactccattcagtcgatcagtatctcaacattaagctcgaaaacacaagtgtcgttgatgaagacaagtaccctcacatgcgttcggtgaggaactgcttcatcagaggatcagtggtgagatacgtccagttacctccagatggagtcgacatagagctgcttcatgatgctacgaggagagaagctcgtggtggctaaaagcctaaaatctgagaccttcaaaagtggaagtacttttaaacttttgagtggtaaatcagcatgtactgattttctttgttaaatgtatttttagatgctattgcatgcagtgctttgtattctgctggtcctcctctccatttttacctaactgtgtggtgtgaaagccttggatgggattttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="111540" stop="108538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111540" g_stop="111493" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="56" r_length="49" r_score="0.833"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111492" i_stop="111240" i_length="253">
            <donor d_prob="0.998" d_score="0.83"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111239" g_stop="111116" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="180" r_length="124" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111115" i_stop="109124" i_length="1992">
            <donor d_prob="0.907" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109123" g_stop="108841" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="461" r_length="281" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E435006" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E435006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111540" e_stop="111493"/>
          <exon e_start="111239" e_stop="111116"/>
          <exon e_start="109123" e_stop="108841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGAAAAACGTGTGAACTGACGAG-CTTTCCCATAGAAATAGAAAATGGTAATGTTACTCTATCCTTTTCCTCTTGATGTTTATTCCTCACTATTCAGTCTAATCCCTTTAATATCTATCTCCATTGAGTTTTTTAATGAAAAAAGAGATCTTCTGATTGTTGTAGTTTGGAAATTCCGATTCCTTCATGAAAATCAATCGTTTTCATAGCTTTTATATTTTTAACTTGTATCTAACTGAGTTTTCTCCCATCCCACTCTTTCCAGTTGTTTTTCTCATACTTCAAGGACATGGTGGGCAGAGAAGTGACAGTGGAACTGAAGAATGATTTGGCTATCCGAGGTACACTCCATTCAGTCGATCAGTATCTCAACATTAAGCTCGAAAACACAAGGGTCGTTGATGAAGACAAGTACCCTCACATGGTAATTGCATTCCCTTTTCTCCTTCATTCGGGTTTTGGTGGGTGGATAAAGTAATGCTTCTTGATTAGGAATGCTAACTTCTGTACTTTTATATACAATGGTTGTATTGTTAAGCATGCTAGAGTTCTCTTAGGCCTCTGACAATTTTGGGTGAGTAAGTTAACCACTAGGGAATTCAGTAGTGTTCACTGCTCTTTCTTCCATATCTTTACTATACTTGTTTCTTATTTCTGCTGTTGATTTCTTTTAGGAAGTGATATTCAGTTATTCACTGCTCTCTCTCTCTCTCTCTACACACACATATATTCAAGAATTGATATGCAACTCGGCTTTAATTATACTGTTGAGGTTCATTCTATTTTCTGCGTATATGCAGTATGCACTAGGTGGAAGGATGGTATCTGTTCCATAATATTGTGATTGTAGTTCCAGCGAACCAATAGTTCTTTTAATAGCCATTGACTGTAGTTTTTTTGATAGCTATTGACTGTTGGTTGGATATGTGCACTGGAAAAGGTTAATGATTTGTGAATATTATTTTGATGATATCAAGCCTTTTATAAAGCACCTGCTGCTTCAATCCTTCGAGGTTGGAGGCCCTAGTCGCCAAGGGAGTGAAGTGGAAAGGGCCACTATGACATGGGGAGGGAGGATTAGGTGGAAAGGTAGATGTAGCCATGTAGGTTACCATATATAAAAGCAAGAAAAGTATCCTTGACAATTCGCATACTAATGACTGCATTATTGCAAGGCTAAGAAATGGTAAGCAATAGGGTCTAAAACAGTTATTCCTTATCAATTTGTCAAGAATTTATCTGAATCAACTATTGCCACATATGACAACTATTAGTTATCAAAAATGACAAACTATTAATGTTATACAGGTTTTTCTTTAAGCTACGTGATCTTGCAGATCTAATGCCTGAAATGTGAAATGAGTACATTACACTATCTCTAGTCGCAAGTTTCTGAGTGGGTTGTATTAGCTTGACTGGATTATTTTATTTCTCGAAATTTTCCTATGTATAGATCATCTAGTATTCATGGTTAAATATGTTAGCTATTATTCCAAGGTTCTATTTAAGTTAATTCCAGCCTGGAATTGCCTGTTATGGATACAGGAATCTAATGCCAATTCCAATCAGTGGATCATTTTAGTAGGTGCTTCATCAAATAGGCTTAAATCATTAATTAACTTGTCGTGCAAATTCAGAACTAAAATTATGTGGCAAGGTTGGTCTCCAGTATGTTGCCCTTTCCACTATCAGCTCTTTTTTTTAGTAAGTACTTCAATTAAAAAACAAATCCAAGACATAGGAGTGAGGTTTTTACCCTGTGCACACCCAAAGGGTAGCGTCTGCGGGTTTCCCTTGCCATTTTTTTTAAAAAAAACAGTACCAAGATGGTACTGCAGCTTTCTCTGGATCATACTACATCATTGACCTAGACCATCTTTATTTTTATGGCAACACAAAATATCAGCAGTCTTTCGGACACAACTTCTTTACCTCACACAAGGTAGGGGTAAGGTCTGCATCACACAACCTCTCTATCTCTGACTTACACTAGGTTTGTTGTTTTTGTTGTGCAACTGGAACTGGAGAAACAGTTGTCAGAAGATTTGTATATAAGATAAATCTCCCAAGTATGCAAGGGTATTTTGTTGTTGCTGCACGGAGAGTAGATAGCTTACAGTTTCTGCCTTACAAAATCCGGAAAAACAATGTAAAAGTAGCCTTTAAGCAACTACTTGCAAGCCTTTGCTTGTGCACAAGACATGCAAAGTTCCAGAAAATTACAAGTACTAAAAATATATGCAAATATAATAGTATGTTTACTGGTTGACACTGGTGTATTTAGCAGTTTCACCCTCTCCTTTTTTACTTGGTTCACTTTGCTCCGCCTTTTCCTGATATTGTTTGTATTTTTTCACGTGATATGTTTTTAGTTGGTATTACCATTAACATTTTTCATGTCACTTTGCTGTAATAGCGTTCGGTGAGGAACTGCTTCATCAGAGGATCAGTGGTGAGATACGTCCAGTTACCTCCAGACGGAGTCGACATAGAGCTGCTTCATGATGCTACGAGGAGAGAAGCTCGTGGTGGCTAAAAGCCTAAAATTTGAGACCTTCAAAAGCGGATGTACTTTTAAACTTTTGAGTGGGTCAATCAGCATGTACTGATTTGTTTTGTTAAATGTAATTTTAGATGCTATTGCATGCAGTGCTTTGTATTCCTGCTGTTACTCCTCTCCATTTCAACCTAACTGTGTG</genome_strand>
        <mrna_strand>CCCGAAAGACGTGCGAACTAACGAGATTTTTCCATAGAAATAGAATATG.............................................................................................................................................................................................................................................................AGAAGTGACAGTGGAACTGAAGAATGATTTGGCTATCCGAGGCACACTCCATTCAGTCGATCAGTATCTCAACATTAAGCTCGAAAACACAAGTGTCGTTGATGAAGACAAGTACCCTCACATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCGGTGAGGAACTGCTTCATCAGAGGATCAGTGGTGAGATACGTCCAGTTACCTCCAGATGGAGTCGACATAGAGCTGCTTCATGATGCTACGAGGAGAGAAGCTCGTGGTGGCTAAAAGCCTAAAATCTGAGACCTTCAAAAGTGGAAGTACTTTTAAACTTTTGAGT-GGTAAATCAGCATGTACTGATTTTCTTTGTTAAATGTATTTTTAGATGCTATTGCATGCAGTGCTTTGTATT-CTGCTGGTCCTCCTCTCCATTTTTACCTAACTGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344484" ref_strand="+" ref_description="SGN-E344484 [cTOF-14-H1]">
      <seq>gagtgtctctgaaattgggagttttgtccggtgaatttgaaactaaaggcatcattcatcagttttgtccggtgaattggagttatttctggcagctgaagcccgaaaaacgtgtgaactgacgagctttcccatagaaatagaaaatgttgtttttctcatacttcaaggacatggtgggcagagaagtgacagtggaactgaagaatgatttggctatccgaggtacactccattcagtcgatcagtatctcaacattaagctcgaaaacacaagggtcgttgatgaagacaagtaccctcacatgcgttcggtgaggaactgcttcatcagaggatcagtggtgagatacgtccagttacctccagacggagtcgacatagagctgcttcatgatgctacgaggagagaagctcgtggtggctaaaagcctaaaatttgagaccttcaaaagcggatgtacttttaaacttttgagtgggtcaatcagcatgtactgatttgttttgttaaatgtaattttagatgctattgcatgcagtgctttgtattcctgctgntaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112583" stop="108569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112283" g_stop="112200" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112199" i_stop="111558" i_length="642">
            <donor d_prob="0.753" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111557" g_stop="111493" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="149" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111492" i_stop="111275" i_length="218">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111274" g_stop="111116" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="308" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111115" i_stop="109124" i_length="1992">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109123" g_stop="108873" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="559" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="563" polyA_stop="572"/>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E344484" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112283" e_stop="112200"/>
          <exon e_start="111557" e_stop="111493"/>
          <exon e_start="111274" e_stop="111116"/>
          <exon e_start="109123" e_stop="108873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGTCTCTGAAATTGGGAGTTTTGTCCGGTGAATTTGAAACTAAAGGCATCATTCATCAGTTTTGTCCGGTGAATTGGAGTTGTAAGCTGCCCTTTTCCTATCTCTCTCTCGCACTCTCTTTTCTACTGCTGCCGATGCTTGTTTCACCTTCACACCAAAACCCTAGTCCTTCTTTTTCATAGAGCGAGTACGATTTTTACTATTATTTGTTGTTGTTGTGTTTATATGTATAAATATAGCCTTACCTTCAATTTATCATTGTTTTATGTGATTCTAGTTTGCTTTCCATTTGAGGTGTTCCTTTGTGGTTATTTCTGTTTATGAAAACAAAGTTTACTTTCCATTTGAGGTGTTCCTTTGTGGTTATTTCTGTTAATGAAAACAAAGCTGGAAAAATTATTTGTTTTAATCAGCTATGGCCAGAATTTGGGATGAGAGAACTTGACTTTCAAGTCATTTACCAATTCCCTTTTTCAATTGATTCAAATTGCTCCTTAATTCAAATAAAGATATTCAAACATGTGTTTGAGTTTTAAGATTAATATGCTAGAGAATTTGATAGGTAATATCCATGTAAATGATACTCCCTCCTTTGAATGTATTAGTGAATTTGAATTATTAAAACTTGTTAGTTTTGTGTTGAAATGGAATATTATGATATTAATTGGAATCATGAAAGTTCTAACATTTTTGTTACTTAACGTATACTGTATGAAATGTCAGATTTCTGGCAGCTGAAGCCCGAAAAACGTGTGAACTGACGAGCTTTCCCATAGAAATAGAAAATGGTAATGTTACTCTATCCTTTTCCTCTTGATGTTTATTCCTCACTATTCAGTCTAATCCCTTTAATATCTATCTCCATTGAGTTTTTTAATGAAAAAAGAGATCTTCTGATTGTTGTAGTTTGGAAATTCCGATTCCTTCATGAAAATCAATCGTTTTCATAGCTTTTATATTTTTAACTTGTATCTAACTGAGTTTTCTCCCATCCCACTCTTTCCAGTTGTTTTTCTCATACTTCAAGGACATGGTGGGCAGAGAAGTGACAGTGGAACTGAAGAATGATTTGGCTATCCGAGGTACACTCCATTCAGTCGATCAGTATCTCAACATTAAGCTCGAAAACACAAGGGTCGTTGATGAAGACAAGTACCCTCACATGGTAATTGCATTCCCTTTTCTCCTTCATTCGGGTTTTGGTGGGTGGATAAAGTAATGCTTCTTGATTAGGAATGCTAACTTCTGTACTTTTATATACAATGGTTGTATTGTTAAGCATGCTAGAGTTCTCTTAGGCCTCTGACAATTTTGGGTGAGTAAGTTAACCACTAGGGAATTCAGTAGTGTTCACTGCTCTTTCTTCCATATCTTTACTATACTTGTTTCTTATTTCTGCTGTTGATTTCTTTTAGGAAGTGATATTCAGTTATTCACTGCTCTCTCTCTCTCTCTCTACACACACATATATTCAAGAATTGATATGCAACTCGGCTTTAATTATACTGTTGAGGTTCATTCTATTTTCTGCGTATATGCAGTATGCACTAGGTGGAAGGATGGTATCTGTTCCATAATATTGTGATTGTAGTTCCAGCGAACCAATAGTTCTTTTAATAGCCATTGACTGTAGTTTTTTTGATAGCTATTGACTGTTGGTTGGATATGTGCACTGGAAAAGGTTAATGATTTGTGAATATTATTTTGATGATATCAAGCCTTTTATAAAGCACCTGCTGCTTCAATCCTTCGAGGTTGGAGGCCCTAGTCGCCAAGGGAGTGAAGTGGAAAGGGCCACTATGACATGGGGAGGGAGGATTAGGTGGAAAGGTAGATGTAGCCATGTAGGTTACCATATATAAAAGCAAGAAAAGTATCCTTGACAATTCGCATACTAATGACTGCATTATTGCAAGGCTAAGAAATGGTAAGCAATAGGGTCTAAAACAGTTATTCCTTATCAATTTGTCAAGAATTTATCTGAATCAACTATTGCCACATATGACAACTATTAGTTATCAAAAATGACAAACTATTAATGTTATACAGGTTTTTCTTTAAGCTACGTGATCTTGCAGATCTAATGCCTGAAATGTGAAATGAGTACATTACACTATCTCTAGTCGCAAGTTTCTGAGTGGGTTGTATTAGCTTGACTGGATTATTTTATTTCTCGAAATTTTCCTATGTATAGATCATCTAGTATTCATGGTTAAATATGTTAGCTATTATTCCAAGGTTCTATTTAAGTTAATTCCAGCCTGGAATTGCCTGTTATGGATACAGGAATCTAATGCCAATTCCAATCAGTGGATCATTTTAGTAGGTGCTTCATCAAATAGGCTTAAATCATTAATTAACTTGTCGTGCAAATTCAGAACTAAAATTATGTGGCAAGGTTGGTCTCCAGTATGTTGCCCTTTCCACTATCAGCTCTTTTTTTTAGTAAGTACTTCAATTAAAAAACAAATCCAAGACATAGGAGTGAGGTTTTTACCCTGTGCACACCCAAAGGGTAGCGTCTGCGGGTTTCCCTTGCCATTTTTTTTAAAAAAAACAGTACCAAGATGGTACTGCAGCTTTCTCTGGATCATACTACATCATTGACCTAGACCATCTTTATTTTTATGGCAACACAAAATATCAGCAGTCTTTCGGACACAACTTCTTTACCTCACACAAGGTAGGGGTAAGGTCTGCATCACACAACCTCTCTATCTCTGACTTACACTAGGTTTGTTGTTTTTGTTGTGCAACTGGAACTGGAGAAACAGTTGTCAGAAGATTTGTATATAAGATAAATCTCCCAAGTATGCAAGGGTATTTTGTTGTTGCTGCACGGAGAGTAGATAGCTTACAGTTTCTGCCTTACAAAATCCGGAAAAACAATGTAAAAGTAGCCTTTAAGCAACTACTTGCAAGCCTTTGCTTGTGCACAAGACATGCAAAGTTCCAGAAAATTACAAGTACTAAAAATATATGCAAATATAATAGTATGTTTACTGGTTGACACTGGTGTATTTAGCAGTTTCACCCTCTCCTTTTTTACTTGGTTCACTTTGCTCCGCCTTTTCCTGATATTGTTTGTATTTTTTCACGTGATATGTTTTTAGTTGGTATTACCATTAACATTTTTCATGTCACTTTGCTGTAATAGCGTTCGGTGAGGAACTGCTTCATCAGAGGATCAGTGGTGAGATACGTCCAGTTACCTCCAGACGGAGTCGACATAGAGCTGCTTCATGATGCTACGAGGAGAGAAGCTCGTGGTGGCTAAAAGCCTAAAATTTGAGACCTTCAAAAGCGGATGTACTTTTAAACTTTTGAGTGGGTCAATCAGCATGTACTGATTTGTTTTGTTAAATGTAATTTTAGATGCTATTGCATGCAGTGCTTTGTATTCCTGCT</genome_strand>
        <mrna_strand>GAGTGTCTCTGAAATTGGGAGTTTTGTCCGGTGAATTTGAAACTAAAGGCATCATTCATCAGTTTTGTCCGGTGAATTGGAGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTGGCAGCTGAAGCCCGAAAAACGTGTGAACTGACGAGCTTTCCCATAGAAATAGAAAATG..........................................................................................................................................................................................................................TTGTTTTTCTCATACTTCAAGGACATGGTGGGCAGAGAAGTGACAGTGGAACTGAAGAATGATTTGGCTATCCGAGGTACACTCCATTCAGTCGATCAGTATCTCAACATTAAGCTCGAAAACACAAGGGTCGTTGATGAAGACAAGTACCCTCACATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCGGTGAGGAACTGCTTCATCAGAGGATCAGTGGTGAGATACGTCCAGTTACCTCCAGACGGAGTCGACATAGAGCTGCTTCATGATGCTACGAGGAGAGAAGCTCGTGGTGGCTAAAAGCCTAAAATTTGAGACCTTCAAAAGCGGATGTACTTTTAAACTTTTGAGTGGGTCAATCAGCATGTACTGATTTGTTTTGTTAAATGTAATTTTAGATGCTATTGCATGCAGTGCTTTGTATTCCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734182" ref_strand="+" ref_description="SGN-E734182 [LB12AA05]">
      <seq>tgagtgtctctgaaattgggagttttgtccggtgaatttgaaactaaaggcatcattcatcagttttgtccggtgaattggagttatttctggcagctgaagcccgaaaaacgtgtgaactgacgagctttcccatagaaatagaaaatgttgtttttctcatacttcaaggacatggtgggcagagaagtgacagtggaactgaagaatgatttggctatccgaggtacactccattcagtcgatcagtatctcaacattaagctcgaaaacacaagggtcgttgatgaagacaagtaccctcacatgcgttcggtgaggaactgcttcatcagaggatcagtggtgagatacgtccagttacctccagacggagtcgacatagagctgcttcatgatgctacgaggagagaagctcgtggtggctaaaagcctaaaatttgagaccttcaaaagcggatgtacttttaaacttttgagtgggtcaatcagcatgtactgatttgttttgttaaatgtaattttagatgctattgcatgcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112584" stop="108591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112284" g_stop="112200" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112199" i_stop="111558" i_length="642">
            <donor d_prob="0.753" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111557" g_stop="111493" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="150" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111492" i_stop="111275" i_length="218">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111274" g_stop="111116" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="309" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111115" i_stop="109124" i_length="1992">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109123" g_stop="108891" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="542" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="543" polyA_stop="554"/>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E734182" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112284" e_stop="112200"/>
          <exon e_start="111557" e_stop="111493"/>
          <exon e_start="111274" e_stop="111116"/>
          <exon e_start="109123" e_stop="108891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTGTCTCTGAAATTGGGAGTTTTGTCCGGTGAATTTGAAACTAAAGGCATCATTCATCAGTTTTGTCCGGTGAATTGGAGTTGTAAGCTGCCCTTTTCCTATCTCTCTCTCGCACTCTCTTTTCTACTGCTGCCGATGCTTGTTTCACCTTCACACCAAAACCCTAGTCCTTCTTTTTCATAGAGCGAGTACGATTTTTACTATTATTTGTTGTTGTTGTGTTTATATGTATAAATATAGCCTTACCTTCAATTTATCATTGTTTTATGTGATTCTAGTTTGCTTTCCATTTGAGGTGTTCCTTTGTGGTTATTTCTGTTTATGAAAACAAAGTTTACTTTCCATTTGAGGTGTTCCTTTGTGGTTATTTCTGTTAATGAAAACAAAGCTGGAAAAATTATTTGTTTTAATCAGCTATGGCCAGAATTTGGGATGAGAGAACTTGACTTTCAAGTCATTTACCAATTCCCTTTTTCAATTGATTCAAATTGCTCCTTAATTCAAATAAAGATATTCAAACATGTGTTTGAGTTTTAAGATTAATATGCTAGAGAATTTGATAGGTAATATCCATGTAAATGATACTCCCTCCTTTGAATGTATTAGTGAATTTGAATTATTAAAACTTGTTAGTTTTGTGTTGAAATGGAATATTATGATATTAATTGGAATCATGAAAGTTCTAACATTTTTGTTACTTAACGTATACTGTATGAAATGTCAGATTTCTGGCAGCTGAAGCCCGAAAAACGTGTGAACTGACGAGCTTTCCCATAGAAATAGAAAATGGTAATGTTACTCTATCCTTTTCCTCTTGATGTTTATTCCTCACTATTCAGTCTAATCCCTTTAATATCTATCTCCATTGAGTTTTTTAATGAAAAAAGAGATCTTCTGATTGTTGTAGTTTGGAAATTCCGATTCCTTCATGAAAATCAATCGTTTTCATAGCTTTTATATTTTTAACTTGTATCTAACTGAGTTTTCTCCCATCCCACTCTTTCCAGTTGTTTTTCTCATACTTCAAGGACATGGTGGGCAGAGAAGTGACAGTGGAACTGAAGAATGATTTGGCTATCCGAGGTACACTCCATTCAGTCGATCAGTATCTCAACATTAAGCTCGAAAACACAAGGGTCGTTGATGAAGACAAGTACCCTCACATGGTAATTGCATTCCCTTTTCTCCTTCATTCGGGTTTTGGTGGGTGGATAAAGTAATGCTTCTTGATTAGGAATGCTAACTTCTGTACTTTTATATACAATGGTTGTATTGTTAAGCATGCTAGAGTTCTCTTAGGCCTCTGACAATTTTGGGTGAGTAAGTTAACCACTAGGGAATTCAGTAGTGTTCACTGCTCTTTCTTCCATATCTTTACTATACTTGTTTCTTATTTCTGCTGTTGATTTCTTTTAGGAAGTGATATTCAGTTATTCACTGCTCTCTCTCTCTCTCTCTACACACACATATATTCAAGAATTGATATGCAACTCGGCTTTAATTATACTGTTGAGGTTCATTCTATTTTCTGCGTATATGCAGTATGCACTAGGTGGAAGGATGGTATCTGTTCCATAATATTGTGATTGTAGTTCCAGCGAACCAATAGTTCTTTTAATAGCCATTGACTGTAGTTTTTTTGATAGCTATTGACTGTTGGTTGGATATGTGCACTGGAAAAGGTTAATGATTTGTGAATATTATTTTGATGATATCAAGCCTTTTATAAAGCACCTGCTGCTTCAATCCTTCGAGGTTGGAGGCCCTAGTCGCCAAGGGAGTGAAGTGGAAAGGGCCACTATGACATGGGGAGGGAGGATTAGGTGGAAAGGTAGATGTAGCCATGTAGGTTACCATATATAAAAGCAAGAAAAGTATCCTTGACAATTCGCATACTAATGACTGCATTATTGCAAGGCTAAGAAATGGTAAGCAATAGGGTCTAAAACAGTTATTCCTTATCAATTTGTCAAGAATTTATCTGAATCAACTATTGCCACATATGACAACTATTAGTTATCAAAAATGACAAACTATTAATGTTATACAGGTTTTTCTTTAAGCTACGTGATCTTGCAGATCTAATGCCTGAAATGTGAAATGAGTACATTACACTATCTCTAGTCGCAAGTTTCTGAGTGGGTTGTATTAGCTTGACTGGATTATTTTATTTCTCGAAATTTTCCTATGTATAGATCATCTAGTATTCATGGTTAAATATGTTAGCTATTATTCCAAGGTTCTATTTAAGTTAATTCCAGCCTGGAATTGCCTGTTATGGATACAGGAATCTAATGCCAATTCCAATCAGTGGATCATTTTAGTAGGTGCTTCATCAAATAGGCTTAAATCATTAATTAACTTGTCGTGCAAATTCAGAACTAAAATTATGTGGCAAGGTTGGTCTCCAGTATGTTGCCCTTTCCACTATCAGCTCTTTTTTTTAGTAAGTACTTCAATTAAAAAACAAATCCAAGACATAGGAGTGAGGTTTTTACCCTGTGCACACCCAAAGGGTAGCGTCTGCGGGTTTCCCTTGCCATTTTTTTTAAAAAAAACAGTACCAAGATGGTACTGCAGCTTTCTCTGGATCATACTACATCATTGACCTAGACCATCTTTATTTTTATGGCAACACAAAATATCAGCAGTCTTTCGGACACAACTTCTTTACCTCACACAAGGTAGGGGTAAGGTCTGCATCACACAACCTCTCTATCTCTGACTTACACTAGGTTTGTTGTTTTTGTTGTGCAACTGGAACTGGAGAAACAGTTGTCAGAAGATTTGTATATAAGATAAATCTCCCAAGTATGCAAGGGTATTTTGTTGTTGCTGCACGGAGAGTAGATAGCTTACAGTTTCTGCCTTACAAAATCCGGAAAAACAATGTAAAAGTAGCCTTTAAGCAACTACTTGCAAGCCTTTGCTTGTGCACAAGACATGCAAAGTTCCAGAAAATTACAAGTACTAAAAATATATGCAAATATAATAGTATGTTTACTGGTTGACACTGGTGTATTTAGCAGTTTCACCCTCTCCTTTTTTACTTGGTTCACTTTGCTCCGCCTTTTCCTGATATTGTTTGTATTTTTTCACGTGATATGTTTTTAGTTGGTATTACCATTAACATTTTTCATGTCACTTTGCTGTAATAGCGTTCGGTGAGGAACTGCTTCATCAGAGGATCAGTGGTGAGATACGTCCAGTTACCTCCAGACGGAGTCGACATAGAGCTGCTTCATGATGCTACGAGGAGAGAAGCTCGTGGTGGCTAAAAGCCTAAAATTTGAGACCTTCAAAAGCGGATGTACTTTTAAACTTTTGAGTGGGTCAATCAGCATGTACTGATTTGTTTTGTTAAATGTAATTTTAGATGCTATTGCATGCA</genome_strand>
        <mrna_strand>TGAGTGTCTCTGAAATTGGGAGTTTTGTCCGGTGAATTTGAAACTAAAGGCATCATTCATCAGTTTTGTCCGGTGAATTGGAGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTGGCAGCTGAAGCCCGAAAAACGTGTGAACTGACGAGCTTTCCCATAGAAATAGAAAATG..........................................................................................................................................................................................................................TTGTTTTTCTCATACTTCAAGGACATGGTGGGCAGAGAAGTGACAGTGGAACTGAAGAATGATTTGGCTATCCGAGGTACACTCCATTCAGTCGATCAGTATCTCAACATTAAGCTCGAAAACACAAGGGTCGTTGATGAAGACAAGTACCCTCACATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCGGTGAGGAACTGCTTCATCAGAGGATCAGTGGTGAGATACGTCCAGTTACCTCCAGACGGAGTCGACATAGAGCTGCTTCATGATGCTACGAGGAGAGAAGCTCGTGGTGGCTAAAAGCCTAAAATTTGAGACCTTCAAAAGCGGATGTACTTTTAAACTTTTGAGTGGGTCAATCAGCATGTACTGATTTGTTTTGTTAAATGTAATTTTAGATGCTATTGCATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278940" ref_strand="+" ref_description="SGN-E278940 [cLER-2-K12]">
      <seq>tgaaattgggagttttgtccggtgaatttgaaactaaaggcatcattcatcagttttgtccggtgaattggagttatttctggcagctgaagcccgaaaaacgtgtgaactgacgagctttcccatagaaatagaaaatgttgtttttctcatacttcaaggacatggtgggcagagaagtgacagtggaactgaagaatgatttggctatccgaggtacactccattcagtcgatcagtatctcaacattaagctcgaaaacacaagggtcgttgatgaagacaagtaccctcacatgcgttcggtgaggaactgcttcatcagaggatcagtggtgagatacgtccagttacctccagacggagtcgacatagagctgcttcatgatgctacgaggagagaagctcgtggtggctaaaagcctaaaatttgagaccttcaaaagcggatgtacttttaaacttttgagtgggtcaatcagcatgtactgatttgttttgttaaatgtaattttagatgctattgcatgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112574" stop="108591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112274" g_stop="112200" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112199" i_stop="111558" i_length="642">
            <donor d_prob="0.753" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111557" g_stop="111493" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="140" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111492" i_stop="111275" i_length="218">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111274" g_stop="111116" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="299" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111115" i_stop="109124" i_length="1992">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109123" g_stop="108891" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="532" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E278940" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112274" e_stop="112200"/>
          <exon e_start="111557" e_stop="111493"/>
          <exon e_start="111274" e_stop="111116"/>
          <exon e_start="109123" e_stop="108891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTGGGAGTTTTGTCCGGTGAATTTGAAACTAAAGGCATCATTCATCAGTTTTGTCCGGTGAATTGGAGTTGTAAGCTGCCCTTTTCCTATCTCTCTCTCGCACTCTCTTTTCTACTGCTGCCGATGCTTGTTTCACCTTCACACCAAAACCCTAGTCCTTCTTTTTCATAGAGCGAGTACGATTTTTACTATTATTTGTTGTTGTTGTGTTTATATGTATAAATATAGCCTTACCTTCAATTTATCATTGTTTTATGTGATTCTAGTTTGCTTTCCATTTGAGGTGTTCCTTTGTGGTTATTTCTGTTTATGAAAACAAAGTTTACTTTCCATTTGAGGTGTTCCTTTGTGGTTATTTCTGTTAATGAAAACAAAGCTGGAAAAATTATTTGTTTTAATCAGCTATGGCCAGAATTTGGGATGAGAGAACTTGACTTTCAAGTCATTTACCAATTCCCTTTTTCAATTGATTCAAATTGCTCCTTAATTCAAATAAAGATATTCAAACATGTGTTTGAGTTTTAAGATTAATATGCTAGAGAATTTGATAGGTAATATCCATGTAAATGATACTCCCTCCTTTGAATGTATTAGTGAATTTGAATTATTAAAACTTGTTAGTTTTGTGTTGAAATGGAATATTATGATATTAATTGGAATCATGAAAGTTCTAACATTTTTGTTACTTAACGTATACTGTATGAAATGTCAGATTTCTGGCAGCTGAAGCCCGAAAAACGTGTGAACTGACGAGCTTTCCCATAGAAATAGAAAATGGTAATGTTACTCTATCCTTTTCCTCTTGATGTTTATTCCTCACTATTCAGTCTAATCCCTTTAATATCTATCTCCATTGAGTTTTTTAATGAAAAAAGAGATCTTCTGATTGTTGTAGTTTGGAAATTCCGATTCCTTCATGAAAATCAATCGTTTTCATAGCTTTTATATTTTTAACTTGTATCTAACTGAGTTTTCTCCCATCCCACTCTTTCCAGTTGTTTTTCTCATACTTCAAGGACATGGTGGGCAGAGAAGTGACAGTGGAACTGAAGAATGATTTGGCTATCCGAGGTACACTCCATTCAGTCGATCAGTATCTCAACATTAAGCTCGAAAACACAAGGGTCGTTGATGAAGACAAGTACCCTCACATGGTAATTGCATTCCCTTTTCTCCTTCATTCGGGTTTTGGTGGGTGGATAAAGTAATGCTTCTTGATTAGGAATGCTAACTTCTGTACTTTTATATACAATGGTTGTATTGTTAAGCATGCTAGAGTTCTCTTAGGCCTCTGACAATTTTGGGTGAGTAAGTTAACCACTAGGGAATTCAGTAGTGTTCACTGCTCTTTCTTCCATATCTTTACTATACTTGTTTCTTATTTCTGCTGTTGATTTCTTTTAGGAAGTGATATTCAGTTATTCACTGCTCTCTCTCTCTCTCTCTACACACACATATATTCAAGAATTGATATGCAACTCGGCTTTAATTATACTGTTGAGGTTCATTCTATTTTCTGCGTATATGCAGTATGCACTAGGTGGAAGGATGGTATCTGTTCCATAATATTGTGATTGTAGTTCCAGCGAACCAATAGTTCTTTTAATAGCCATTGACTGTAGTTTTTTTGATAGCTATTGACTGTTGGTTGGATATGTGCACTGGAAAAGGTTAATGATTTGTGAATATTATTTTGATGATATCAAGCCTTTTATAAAGCACCTGCTGCTTCAATCCTTCGAGGTTGGAGGCCCTAGTCGCCAAGGGAGTGAAGTGGAAAGGGCCACTATGACATGGGGAGGGAGGATTAGGTGGAAAGGTAGATGTAGCCATGTAGGTTACCATATATAAAAGCAAGAAAAGTATCCTTGACAATTCGCATACTAATGACTGCATTATTGCAAGGCTAAGAAATGGTAAGCAATAGGGTCTAAAACAGTTATTCCTTATCAATTTGTCAAGAATTTATCTGAATCAACTATTGCCACATATGACAACTATTAGTTATCAAAAATGACAAACTATTAATGTTATACAGGTTTTTCTTTAAGCTACGTGATCTTGCAGATCTAATGCCTGAAATGTGAAATGAGTACATTACACTATCTCTAGTCGCAAGTTTCTGAGTGGGTTGTATTAGCTTGACTGGATTATTTTATTTCTCGAAATTTTCCTATGTATAGATCATCTAGTATTCATGGTTAAATATGTTAGCTATTATTCCAAGGTTCTATTTAAGTTAATTCCAGCCTGGAATTGCCTGTTATGGATACAGGAATCTAATGCCAATTCCAATCAGTGGATCATTTTAGTAGGTGCTTCATCAAATAGGCTTAAATCATTAATTAACTTGTCGTGCAAATTCAGAACTAAAATTATGTGGCAAGGTTGGTCTCCAGTATGTTGCCCTTTCCACTATCAGCTCTTTTTTTTAGTAAGTACTTCAATTAAAAAACAAATCCAAGACATAGGAGTGAGGTTTTTACCCTGTGCACACCCAAAGGGTAGCGTCTGCGGGTTTCCCTTGCCATTTTTTTTAAAAAAAACAGTACCAAGATGGTACTGCAGCTTTCTCTGGATCATACTACATCATTGACCTAGACCATCTTTATTTTTATGGCAACACAAAATATCAGCAGTCTTTCGGACACAACTTCTTTACCTCACACAAGGTAGGGGTAAGGTCTGCATCACACAACCTCTCTATCTCTGACTTACACTAGGTTTGTTGTTTTTGTTGTGCAACTGGAACTGGAGAAACAGTTGTCAGAAGATTTGTATATAAGATAAATCTCCCAAGTATGCAAGGGTATTTTGTTGTTGCTGCACGGAGAGTAGATAGCTTACAGTTTCTGCCTTACAAAATCCGGAAAAACAATGTAAAAGTAGCCTTTAAGCAACTACTTGCAAGCCTTTGCTTGTGCACAAGACATGCAAAGTTCCAGAAAATTACAAGTACTAAAAATATATGCAAATATAATAGTATGTTTACTGGTTGACACTGGTGTATTTAGCAGTTTCACCCTCTCCTTTTTTACTTGGTTCACTTTGCTCCGCCTTTTCCTGATATTGTTTGTATTTTTTCACGTGATATGTTTTTAGTTGGTATTACCATTAACATTTTTCATGTCACTTTGCTGTAATAGCGTTCGGTGAGGAACTGCTTCATCAGAGGATCAGTGGTGAGATACGTCCAGTTACCTCCAGACGGAGTCGACATAGAGCTGCTTCATGATGCTACGAGGAGAGAAGCTCGTGGTGGCTAAAAGCCTAAAATTTGAGACCTTCAAAAGCGGATGTACTTTTAAACTTTTGAGTGGGTCAATCAGCATGTACTGATTTGTTTTGTTAAATGTAATTTTAGATGCTATTGCATGCA</genome_strand>
        <mrna_strand>TGAAATTGGGAGTTTTGTCCGGTGAATTTGAAACTAAAGGCATCATTCATCAGTTTTGTCCGGTGAATTGGAGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTGGCAGCTGAAGCCCGAAAAACGTGTGAACTGACGAGCTTTCCCATAGAAATAGAAAATG..........................................................................................................................................................................................................................TTGTTTTTCTCATACTTCAAGGACATGGTGGGCAGAGAAGTGACAGTGGAACTGAAGAATGATTTGGCTATCCGAGGTACACTCCATTCAGTCGATCAGTATCTCAACATTAAGCTCGAAAACACAAGGGTCGTTGATGAAGACAAGTACCCTCACATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCGGTGAGGAACTGCTTCATCAGAGGATCAGTGGTGAGATACGTCCAGTTACCTCCAGACGGAGTCGACATAGAGCTGCTTCATGATGCTACGAGGAGAGAAGCTCGTGGTGGCTAAAAGCCTAAAATTTGAGACCTTCAAAAGCGGATGTACTTTTAAACTTTTGAGTGGGTCAATCAGCATGTACTGATTTGTTTTGTTAAATGTAATTTTAGATGCTATTGCATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324805" ref_strand="+" ref_description="SGN-E324805 [cTOC-8-B14]">
      <seq>aattgagtgtctctgaaattgggagttttgtccggtgaatttgaaacgaaaggcttcattcatcagttttgtccggtgaattggagttatttctggcagctgaagcccgaaaaacgtgtgaactgacgagctttcccatagaaatagaaaatgttgtttttctcatacttcaaggacatggtgggcagagaagtgacagtggaactgaagaatgatttggctatccgaggtacactccattcagtcgatcagtatctcaacattaagctcgaaaacacaagggtcgttgatgaagacaagtaccctcacatgcgttcggtgaggaactgcttcatcagaggatcagtggtgagatacgtccagttacctccagacggagtcgacatagagctgcttcatgatgctacgaggagagaagctcgtggtggctaaaagcctaaaatttgagaccttcaaaagcggatgttcttttaaacttttgagtgggtcaatcagcatgtactgatttgttttgttaaatgtaattttagatgctattgcatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112587" stop="108592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112287" g_stop="112200" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112199" i_stop="111558" i_length="642">
            <donor d_prob="0.753" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111557" g_stop="111493" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="153" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111492" i_stop="111275" i_length="218">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111274" g_stop="111116" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="312" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111115" i_stop="109124" i_length="1992">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109123" g_stop="108892" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="544" r_length="232" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E324805" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112287" e_stop="112200"/>
          <exon e_start="111557" e_stop="111493"/>
          <exon e_start="111274" e_stop="111116"/>
          <exon e_start="109123" e_stop="108892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGAGTGTCTCTGAAATTGGGAGTTTTGTCCGGTGAATTTGAAACTAAAGGCATCATTCATCAGTTTTGTCCGGTGAATTGGAGTTGTAAGCTGCCCTTTTCCTATCTCTCTCTCGCACTCTCTTTTCTACTGCTGCCGATGCTTGTTTCACCTTCACACCAAAACCCTAGTCCTTCTTTTTCATAGAGCGAGTACGATTTTTACTATTATTTGTTGTTGTTGTGTTTATATGTATAAATATAGCCTTACCTTCAATTTATCATTGTTTTATGTGATTCTAGTTTGCTTTCCATTTGAGGTGTTCCTTTGTGGTTATTTCTGTTTATGAAAACAAAGTTTACTTTCCATTTGAGGTGTTCCTTTGTGGTTATTTCTGTTAATGAAAACAAAGCTGGAAAAATTATTTGTTTTAATCAGCTATGGCCAGAATTTGGGATGAGAGAACTTGACTTTCAAGTCATTTACCAATTCCCTTTTTCAATTGATTCAAATTGCTCCTTAATTCAAATAAAGATATTCAAACATGTGTTTGAGTTTTAAGATTAATATGCTAGAGAATTTGATAGGTAATATCCATGTAAATGATACTCCCTCCTTTGAATGTATTAGTGAATTTGAATTATTAAAACTTGTTAGTTTTGTGTTGAAATGGAATATTATGATATTAATTGGAATCATGAAAGTTCTAACATTTTTGTTACTTAACGTATACTGTATGAAATGTCAGATTTCTGGCAGCTGAAGCCCGAAAAACGTGTGAACTGACGAGCTTTCCCATAGAAATAGAAAATGGTAATGTTACTCTATCCTTTTCCTCTTGATGTTTATTCCTCACTATTCAGTCTAATCCCTTTAATATCTATCTCCATTGAGTTTTTTAATGAAAAAAGAGATCTTCTGATTGTTGTAGTTTGGAAATTCCGATTCCTTCATGAAAATCAATCGTTTTCATAGCTTTTATATTTTTAACTTGTATCTAACTGAGTTTTCTCCCATCCCACTCTTTCCAGTTGTTTTTCTCATACTTCAAGGACATGGTGGGCAGAGAAGTGACAGTGGAACTGAAGAATGATTTGGCTATCCGAGGTACACTCCATTCAGTCGATCAGTATCTCAACATTAAGCTCGAAAACACAAGGGTCGTTGATGAAGACAAGTACCCTCACATGGTAATTGCATTCCCTTTTCTCCTTCATTCGGGTTTTGGTGGGTGGATAAAGTAATGCTTCTTGATTAGGAATGCTAACTTCTGTACTTTTATATACAATGGTTGTATTGTTAAGCATGCTAGAGTTCTCTTAGGCCTCTGACAATTTTGGGTGAGTAAGTTAACCACTAGGGAATTCAGTAGTGTTCACTGCTCTTTCTTCCATATCTTTACTATACTTGTTTCTTATTTCTGCTGTTGATTTCTTTTAGGAAGTGATATTCAGTTATTCACTGCTCTCTCTCTCTCTCTCTACACACACATATATTCAAGAATTGATATGCAACTCGGCTTTAATTATACTGTTGAGGTTCATTCTATTTTCTGCGTATATGCAGTATGCACTAGGTGGAAGGATGGTATCTGTTCCATAATATTGTGATTGTAGTTCCAGCGAACCAATAGTTCTTTTAATAGCCATTGACTGTAGTTTTTTTGATAGCTATTGACTGTTGGTTGGATATGTGCACTGGAAAAGGTTAATGATTTGTGAATATTATTTTGATGATATCAAGCCTTTTATAAAGCACCTGCTGCTTCAATCCTTCGAGGTTGGAGGCCCTAGTCGCCAAGGGAGTGAAGTGGAAAGGGCCACTATGACATGGGGAGGGAGGATTAGGTGGAAAGGTAGATGTAGCCATGTAGGTTACCATATATAAAAGCAAGAAAAGTATCCTTGACAATTCGCATACTAATGACTGCATTATTGCAAGGCTAAGAAATGGTAAGCAATAGGGTCTAAAACAGTTATTCCTTATCAATTTGTCAAGAATTTATCTGAATCAACTATTGCCACATATGACAACTATTAGTTATCAAAAATGACAAACTATTAATGTTATACAGGTTTTTCTTTAAGCTACGTGATCTTGCAGATCTAATGCCTGAAATGTGAAATGAGTACATTACACTATCTCTAGTCGCAAGTTTCTGAGTGGGTTGTATTAGCTTGACTGGATTATTTTATTTCTCGAAATTTTCCTATGTATAGATCATCTAGTATTCATGGTTAAATATGTTAGCTATTATTCCAAGGTTCTATTTAAGTTAATTCCAGCCTGGAATTGCCTGTTATGGATACAGGAATCTAATGCCAATTCCAATCAGTGGATCATTTTAGTAGGTGCTTCATCAAATAGGCTTAAATCATTAATTAACTTGTCGTGCAAATTCAGAACTAAAATTATGTGGCAAGGTTGGTCTCCAGTATGTTGCCCTTTCCACTATCAGCTCTTTTTTTTAGTAAGTACTTCAATTAAAAAACAAATCCAAGACATAGGAGTGAGGTTTTTACCCTGTGCACACCCAAAGGGTAGCGTCTGCGGGTTTCCCTTGCCATTTTTTTTAAAAAAAACAGTACCAAGATGGTACTGCAGCTTTCTCTGGATCATACTACATCATTGACCTAGACCATCTTTATTTTTATGGCAACACAAAATATCAGCAGTCTTTCGGACACAACTTCTTTACCTCACACAAGGTAGGGGTAAGGTCTGCATCACACAACCTCTCTATCTCTGACTTACACTAGGTTTGTTGTTTTTGTTGTGCAACTGGAACTGGAGAAACAGTTGTCAGAAGATTTGTATATAAGATAAATCTCCCAAGTATGCAAGGGTATTTTGTTGTTGCTGCACGGAGAGTAGATAGCTTACAGTTTCTGCCTTACAAAATCCGGAAAAACAATGTAAAAGTAGCCTTTAAGCAACTACTTGCAAGCCTTTGCTTGTGCACAAGACATGCAAAGTTCCAGAAAATTACAAGTACTAAAAATATATGCAAATATAATAGTATGTTTACTGGTTGACACTGGTGTATTTAGCAGTTTCACCCTCTCCTTTTTTACTTGGTTCACTTTGCTCCGCCTTTTCCTGATATTGTTTGTATTTTTTCACGTGATATGTTTTTAGTTGGTATTACCATTAACATTTTTCATGTCACTTTGCTGTAATAGCGTTCGGTGAGGAACTGCTTCATCAGAGGATCAGTGGTGAGATACGTCCAGTTACCTCCAGACGGAGTCGACATAGAGCTGCTTCATGATGCTACGAGGAGAGAAGCTCGTGGTGGCTAAAAGCCTAAAATTTGAGACCTTCAAAAGCGGATGTACTTTTAAACTTTTGAGTGGGTCAATCAGCATGTACTGATTTGTTTTGTTAAATGTAATTTTAGATGCTATTGCATGC</genome_strand>
        <mrna_strand>AATTGAGTGTCTCTGAAATTGGGAGTTTTGTCCGGTGAATTTGAAACGAAAGGCTTCATTCATCAGTTTTGTCCGGTGAATTGGAGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTGGCAGCTGAAGCCCGAAAAACGTGTGAACTGACGAGCTTTCCCATAGAAATAGAAAATG..........................................................................................................................................................................................................................TTGTTTTTCTCATACTTCAAGGACATGGTGGGCAGAGAAGTGACAGTGGAACTGAAGAATGATTTGGCTATCCGAGGTACACTCCATTCAGTCGATCAGTATCTCAACATTAAGCTCGAAAACACAAGGGTCGTTGATGAAGACAAGTACCCTCACATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCGGTGAGGAACTGCTTCATCAGAGGATCAGTGGTGAGATACGTCCAGTTACCTCCAGACGGAGTCGACATAGAGCTGCTTCATGATGCTACGAGGAGAGAAGCTCGTGGTGGCTAAAAGCCTAAAATTTGAGACCTTCAAAAGCGGATGTTCTTTTAAACTTTTGAGTGGGTCAATCAGCATGTACTGATTTGTTTTGTTAAATGTAATTTTAGATGCTATTGCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318857" ref_strand="+" ref_description="SGN-E318857 [cTOB-11-C21]">
      <seq>ccagaattgagtgtctctgaaattgggagttttgtccggtgaatttgaaactaaaggcatcattcatcagttttgtccggtgaattggagttatttctggcagctgaagcccgaaaaacgtgtgaactgacgagctttcccatagaaatagaaaatgttgtttttctcatacttcaaggacatggtgggcagagaagtgacagtggaactgaagaatgatttggctatccgaggtacactccattcagtcgatcagtatctcaacattaagctcgaaaacacaagggtcgttgatgaagacaagtaccctcacatgcgttcggtgaggaactgcttcatcagaggatcagtggtgagatacgtccagttacctccagacggagtcgacatagagctgcttcatgatgctacgaggagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112591" stop="108721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112291" g_stop="112200" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112199" i_stop="111558" i_length="642">
            <donor d_prob="0.753" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111557" g_stop="111493" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="157" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111492" i_stop="111275" i_length="218">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111274" g_stop="111116" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="316" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111115" i_stop="109124" i_length="1992">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109123" g_stop="109021" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="419" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E318857" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112291" e_stop="112200"/>
          <exon e_start="111557" e_stop="111493"/>
          <exon e_start="111274" e_stop="111116"/>
          <exon e_start="109123" e_stop="109021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGAATTGAGTGTCTCTGAAATTGGGAGTTTTGTCCGGTGAATTTGAAACTAAAGGCATCATTCATCAGTTTTGTCCGGTGAATTGGAGTTGTAAGCTGCCCTTTTCCTATCTCTCTCTCGCACTCTCTTTTCTACTGCTGCCGATGCTTGTTTCACCTTCACACCAAAACCCTAGTCCTTCTTTTTCATAGAGCGAGTACGATTTTTACTATTATTTGTTGTTGTTGTGTTTATATGTATAAATATAGCCTTACCTTCAATTTATCATTGTTTTATGTGATTCTAGTTTGCTTTCCATTTGAGGTGTTCCTTTGTGGTTATTTCTGTTTATGAAAACAAAGTTTACTTTCCATTTGAGGTGTTCCTTTGTGGTTATTTCTGTTAATGAAAACAAAGCTGGAAAAATTATTTGTTTTAATCAGCTATGGCCAGAATTTGGGATGAGAGAACTTGACTTTCAAGTCATTTACCAATTCCCTTTTTCAATTGATTCAAATTGCTCCTTAATTCAAATAAAGATATTCAAACATGTGTTTGAGTTTTAAGATTAATATGCTAGAGAATTTGATAGGTAATATCCATGTAAATGATACTCCCTCCTTTGAATGTATTAGTGAATTTGAATTATTAAAACTTGTTAGTTTTGTGTTGAAATGGAATATTATGATATTAATTGGAATCATGAAAGTTCTAACATTTTTGTTACTTAACGTATACTGTATGAAATGTCAGATTTCTGGCAGCTGAAGCCCGAAAAACGTGTGAACTGACGAGCTTTCCCATAGAAATAGAAAATGGTAATGTTACTCTATCCTTTTCCTCTTGATGTTTATTCCTCACTATTCAGTCTAATCCCTTTAATATCTATCTCCATTGAGTTTTTTAATGAAAAAAGAGATCTTCTGATTGTTGTAGTTTGGAAATTCCGATTCCTTCATGAAAATCAATCGTTTTCATAGCTTTTATATTTTTAACTTGTATCTAACTGAGTTTTCTCCCATCCCACTCTTTCCAGTTGTTTTTCTCATACTTCAAGGACATGGTGGGCAGAGAAGTGACAGTGGAACTGAAGAATGATTTGGCTATCCGAGGTACACTCCATTCAGTCGATCAGTATCTCAACATTAAGCTCGAAAACACAAGGGTCGTTGATGAAGACAAGTACCCTCACATGGTAATTGCATTCCCTTTTCTCCTTCATTCGGGTTTTGGTGGGTGGATAAAGTAATGCTTCTTGATTAGGAATGCTAACTTCTGTACTTTTATATACAATGGTTGTATTGTTAAGCATGCTAGAGTTCTCTTAGGCCTCTGACAATTTTGGGTGAGTAAGTTAACCACTAGGGAATTCAGTAGTGTTCACTGCTCTTTCTTCCATATCTTTACTATACTTGTTTCTTATTTCTGCTGTTGATTTCTTTTAGGAAGTGATATTCAGTTATTCACTGCTCTCTCTCTCTCTCTCTACACACACATATATTCAAGAATTGATATGCAACTCGGCTTTAATTATACTGTTGAGGTTCATTCTATTTTCTGCGTATATGCAGTATGCACTAGGTGGAAGGATGGTATCTGTTCCATAATATTGTGATTGTAGTTCCAGCGAACCAATAGTTCTTTTAATAGCCATTGACTGTAGTTTTTTTGATAGCTATTGACTGTTGGTTGGATATGTGCACTGGAAAAGGTTAATGATTTGTGAATATTATTTTGATGATATCAAGCCTTTTATAAAGCACCTGCTGCTTCAATCCTTCGAGGTTGGAGGCCCTAGTCGCCAAGGGAGTGAAGTGGAAAGGGCCACTATGACATGGGGAGGGAGGATTAGGTGGAAAGGTAGATGTAGCCATGTAGGTTACCATATATAAAAGCAAGAAAAGTATCCTTGACAATTCGCATACTAATGACTGCATTATTGCAAGGCTAAGAAATGGTAAGCAATAGGGTCTAAAACAGTTATTCCTTATCAATTTGTCAAGAATTTATCTGAATCAACTATTGCCACATATGACAACTATTAGTTATCAAAAATGACAAACTATTAATGTTATACAGGTTTTTCTTTAAGCTACGTGATCTTGCAGATCTAATGCCTGAAATGTGAAATGAGTACATTACACTATCTCTAGTCGCAAGTTTCTGAGTGGGTTGTATTAGCTTGACTGGATTATTTTATTTCTCGAAATTTTCCTATGTATAGATCATCTAGTATTCATGGTTAAATATGTTAGCTATTATTCCAAGGTTCTATTTAAGTTAATTCCAGCCTGGAATTGCCTGTTATGGATACAGGAATCTAATGCCAATTCCAATCAGTGGATCATTTTAGTAGGTGCTTCATCAAATAGGCTTAAATCATTAATTAACTTGTCGTGCAAATTCAGAACTAAAATTATGTGGCAAGGTTGGTCTCCAGTATGTTGCCCTTTCCACTATCAGCTCTTTTTTTTAGTAAGTACTTCAATTAAAAAACAAATCCAAGACATAGGAGTGAGGTTTTTACCCTGTGCACACCCAAAGGGTAGCGTCTGCGGGTTTCCCTTGCCATTTTTTTTAAAAAAAACAGTACCAAGATGGTACTGCAGCTTTCTCTGGATCATACTACATCATTGACCTAGACCATCTTTATTTTTATGGCAACACAAAATATCAGCAGTCTTTCGGACACAACTTCTTTACCTCACACAAGGTAGGGGTAAGGTCTGCATCACACAACCTCTCTATCTCTGACTTACACTAGGTTTGTTGTTTTTGTTGTGCAACTGGAACTGGAGAAACAGTTGTCAGAAGATTTGTATATAAGATAAATCTCCCAAGTATGCAAGGGTATTTTGTTGTTGCTGCACGGAGAGTAGATAGCTTACAGTTTCTGCCTTACAAAATCCGGAAAAACAATGTAAAAGTAGCCTTTAAGCAACTACTTGCAAGCCTTTGCTTGTGCACAAGACATGCAAAGTTCCAGAAAATTACAAGTACTAAAAATATATGCAAATATAATAGTATGTTTACTGGTTGACACTGGTGTATTTAGCAGTTTCACCCTCTCCTTTTTTACTTGGTTCACTTTGCTCCGCCTTTTCCTGATATTGTTTGTATTTTTTCACGTGATATGTTTTTAGTTGGTATTACCATTAACATTTTTCATGTCACTTTGCTGTAATAGCGTTCGGTGAGGAACTGCTTCATCAGAGGATCAGTGGTGAGATACGTCCAGTTACCTCCAGACGGAGTCGACATAGAGCTGCTTCATGATGCTACGAGGAGAG</genome_strand>
        <mrna_strand>CCAGAATTGAGTGTCTCTGAAATTGGGAGTTTTGTCCGGTGAATTTGAAACTAAAGGCATCATTCATCAGTTTTGTCCGGTGAATTGGAGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTGGCAGCTGAAGCCCGAAAAACGTGTGAACTGACGAGCTTTCCCATAGAAATAGAAAATG..........................................................................................................................................................................................................................TTGTTTTTCTCATACTTCAAGGACATGGTGGGCAGAGAAGTGACAGTGGAACTGAAGAATGATTTGGCTATCCGAGGTACACTCCATTCAGTCGATCAGTATCTCAACATTAAGCTCGAAAACACAAGGGTCGTTGATGAAGACAAGTACCCTCACATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCGGTGAGGAACTGCTTCATCAGAGGATCAGTGGTGAGATACGTCCAGTTACCTCCAGACGGAGTCGACATAGAGCTGCTTCATGATGCTACGAGGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291187" ref_strand="+" ref_description="SGN-E291187 [cLET-8-P4]">
      <seq>gagaattgaggttcacttgccctacttttccagaattgagtgtctctgaaattgggagttttgtccggtgaatttgaaactaaaggcatcattcatcagttttgtccggtgaattggagttatttctggcagctgaagcccgaaaaacgtgtgaactgacgagctttcccatagaaatagaaaatgttgtttttctcatacttcaaggacatggtgggcagagaagtgacagtggaactgaagaatgatttggctatccgaggtacactccattcagtcgatcagtatctcaacattaagctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="-" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112620" stop="110857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112320" g_stop="112200" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112199" i_stop="111558" i_length="642">
            <donor d_prob="0.753" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111557" g_stop="111493" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="186" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111492" i_stop="111275" i_length="218">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111274" g_stop="111157" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="304" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="-" ref_id="SGN-E291187" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112320" e_stop="112200"/>
          <exon e_start="111557" e_stop="111493"/>
          <exon e_start="111274" e_stop="111157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATTGAGGTTCACTTGCCCTACTTTTCCAGAATTGAGTGTCTCTGAAATTGGGAGTTTTGTCCGGTGAATTTGAAACTAAAGGCATCATTCATCAGTTTTGTCCGGTGAATTGGAGTTGTAAGCTGCCCTTTTCCTATCTCTCTCTCGCACTCTCTTTTCTACTGCTGCCGATGCTTGTTTCACCTTCACACCAAAACCCTAGTCCTTCTTTTTCATAGAGCGAGTACGATTTTTACTATTATTTGTTGTTGTTGTGTTTATATGTATAAATATAGCCTTACCTTCAATTTATCATTGTTTTATGTGATTCTAGTTTGCTTTCCATTTGAGGTGTTCCTTTGTGGTTATTTCTGTTTATGAAAACAAAGTTTACTTTCCATTTGAGGTGTTCCTTTGTGGTTATTTCTGTTAATGAAAACAAAGCTGGAAAAATTATTTGTTTTAATCAGCTATGGCCAGAATTTGGGATGAGAGAACTTGACTTTCAAGTCATTTACCAATTCCCTTTTTCAATTGATTCAAATTGCTCCTTAATTCAAATAAAGATATTCAAACATGTGTTTGAGTTTTAAGATTAATATGCTAGAGAATTTGATAGGTAATATCCATGTAAATGATACTCCCTCCTTTGAATGTATTAGTGAATTTGAATTATTAAAACTTGTTAGTTTTGTGTTGAAATGGAATATTATGATATTAATTGGAATCATGAAAGTTCTAACATTTTTGTTACTTAACGTATACTGTATGAAATGTCAGATTTCTGGCAGCTGAAGCCCGAAAAACGTGTGAACTGACGAGCTTTCCCATAGAAATAGAAAATGGTAATGTTACTCTATCCTTTTCCTCTTGATGTTTATTCCTCACTATTCAGTCTAATCCCTTTAATATCTATCTCCATTGAGTTTTTTAATGAAAAAAGAGATCTTCTGATTGTTGTAGTTTGGAAATTCCGATTCCTTCATGAAAATCAATCGTTTTCATAGCTTTTATATTTTTAACTTGTATCTAACTGAGTTTTCTCCCATCCCACTCTTTCCAGTTGTTTTTCTCATACTTCAAGGACATGGTGGGCAGAGAAGTGACAGTGGAACTGAAGAATGATTTGGCTATCCGAGGTACACTCCATTCAGTCGATCAGTATCTCAACATTAAGCTCG</genome_strand>
        <mrna_strand>GAGAATTGAGGTTCACTTGCCCTACTTTTCCAGAATTGAGTGTCTCTGAAATTGGGAGTTTTGTCCGGTGAATTTGAAACTAAAGGCATCATTCATCAGTTTTGTCCGGTGAATTGGAGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTGGCAGCTGAAGCCCGAAAAACGTGTGAACTGACGAGCTTTCCCATAGAAATAGAAAATG..........................................................................................................................................................................................................................TTGTTTTTCTCATACTTCAAGGACATGGTGGGCAGAGAAGTGACAGTGGAACTGAAGAATGATTTGGCTATCCGAGGTACACTCCATTCAGTCGATCAGTATCTCAACATTAAGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727327" ref_strand="+" ref_description="SGN-E727327 [LA14BE11]">
      <seq>gagggataaagagcatgaacataactgcactctcaagtttcctctcaaccactcttagcatcttatggagtgtcagcttcttcaaattccttttattttttaatcccaatttgtctcttcagttttactgttataaagccacatatgctctgcccttctgtaattgctctatttttgtttttccatgattgcttgtcgcctgaaacttgtgttgcttagtcataatttcattcgttaggtttaggttctattatcccttcgagctaccggaaatggttccatgggccggactctcttgctgtttgagtgcagctgctctttaccttctcggtaggagcagtggaagagatgctgaagttcttaaatccgttacaagggttaatcaattgaaggatcttgcacaactactagatactgcatccaaggtgttgcctctggtggttactatatctggaagggttggatcagatacaccaattaactgtgagtacagtggtctacgaggcgtgattgtggaagaaactgccgaacaacattttctgaaacacaatgatgcaggttcttggatacaggattctgccttgatgctctcaatgtgtaaagaagttccgtggtacctggatgatggcacaggtcgcacttttattgttggtggccgtggtgccacgggtttggtactgacagttggaagtgaagccttcgaggaagcagggagatcatttgtgcgagggacattggattatcttcaaggtcttaagatgcttggagtaaagaggattgaacgtgtgctgccagttggtactcctttgactgttgttggcgaggctgtcaaagatgacattggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114564" stop="118149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114858" g_stop="115205" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115206" i_stop="115290" i_length="85">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115291" g_stop="115343" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="399" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115344" i_stop="116019" i_length="676">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.690" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116020" g_stop="116144" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="524" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116145" i_stop="116232" i_length="88">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116233" g_stop="116328" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="620" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116329" i_stop="116450" i_length="122">
            <donor d_prob="0.738" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116451" g_stop="116588" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="758" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="116589" i_stop="116857" i_length="269">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="116858" g_stop="116923" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="824" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="116924" i_stop="117828" i_length="905">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="117829" g_stop="117849" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="825" r_stop="845" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E727327" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114858" e_stop="115205"/>
          <exon e_start="115291" e_stop="115343"/>
          <exon e_start="116020" e_stop="116144"/>
          <exon e_start="116233" e_stop="116328"/>
          <exon e_start="116451" e_stop="116588"/>
          <exon e_start="116858" e_stop="116923"/>
          <exon e_start="117829" e_stop="117849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTAGATAAAGAGCATGAACATAACTGCACTCTCAAGTTTCCTCTCAACCACTCTTAGCATCTTATGGAGTGTCAGCTTCTTCAAATTCCTTTTATTTTTTAATCCCAATTTGTCTCTTCAGTTTTACTGTTATAAAGCCACATATGCTCTGCCCTTCTGTAATTGCTCTATTTTTGTTTTTCCATGATTGCTTGTCGCCTGAAACTTGTGTTGCTTAGTCATAATTTCATTCGTTAGGTTTAGGTTCTATTATCCCTTCGAGCTACCGGAAATGGTTCCATGGGCCGGACTCTCTTGCTGTTTGAGTGCAGCTGCTCTTTACCTTCTCGGTAGGAGCAGTGGAAGGTTTGAACTTCTCTTCTTCCAATTTCATTGCTCTACTGTGTATATTTATGTCCATGAATTTAGATGGATTTGATTTCTAATACAGAGATGCTGAAGTTCTTAAATCCGTTACAAGGGTTAATCAATTGAAGGATCTTGGTAAGTAAATTTGTAATTTCATATGGATGGCTTAGTCTCTCCGCTAATTACTTTCAGCAGACGTTTCAATTACCAGTACAAGGAGGTTGCGTCATATCTTTACTGCATCCATCGTTCATAAGAAAAAGAACTAACTTTTTATCCATTGGGAAAAGAGCAGATGGATTTTTAGTTTTAGTGTGTGATATCATGCTACACTTGTAACTCATTTGAGGTAGTATGTTCGACCATAGGGAAAATTTCTATTTTGGCACCAAATGAGAGTCAGGCAGTGTTAGATGATATACTTAGGCGCATCAGTCCCATGGTAAGTTCGAGTAAATTGGGGATACTATTCAAAGTGGATGGAGGAAAGGTGTGTGACCATGCAAATTGAGTTTCCTCTTTTAACTGGATGGATCTCCTTTTGGTTTCTCTACGAGTAGTAGAGGCATTAGACAAGGATATCCTCATCTTCCTGTGTTCCTTTTAGTTATGAAGGTGCTCAGCGAATTAGTGGAGTAGCTGAGAACATGAGGCTGTTCATGATATTTGAAAGAGGGATATCTGTTAGATCAGAGGCATTACAAATTCTAGAATATAGAACTTAATATTGGATAGTTGTATATATCTTATTGTACCTTTTGTTAGTGCATTCTCTCAACCTTGAATTATCTTTGTACTCCTTTTATTTTAGCACAACTACTAGATACTGCATCCAAGGTGTTGCCTCTGGTGGTTACTATATCTGGAAGGGTTGGATCAGATACACCAATTAACTGTGAGTACAGTGGTCTACGAGGCGTGATTGTGGAAGAAACTGTATGTTATCTCGTTCTTTAAATAATAGCATAAAATGTTTGTTTTCTTTTCAATGATGTTTTGTTAAATGTTCTTGATATTATTACAGGCCGAACAACATTTTCTGAAACACAATGATGCAGGTTCTTGGATACAGGATTCTGCCTTGATGCTCTCAATGTGTAAAGAAGTTCCGTGGTACCTGGTTGGAATGACTTCCTTTTGTCTTTTTATCTTAATAGTCCTGTAGGCTGTTTAAATGAATTCTTAAGAATTCTGCTTTACTTTGATGTATGAATTTTTAATAGTTTTTGACTTGTGTACCAGGATGATGGCACAGGTCGCACTTTTATTGTTGGTGGCCGTGGTGCCACGGGTTTGGTACTGACAGTTGGAAGTGAAGCCTTCGAGGAAGCAGGGAGATCATTTGTGCGAGGGACATTGGATTATCTTCAAGGTCTTAAGGTCTGTTTTATCATATAACTGCTGTTTGTTGCAGGTTGTAATTTGTATTTTCATAACTCTTGTGTCTAAAAAAATTTTGAAGGTAACTTTGACTCTGACCTATTATTTTCACAAGTAGGAGGCCAACGCCATTTTTAATTAGCGTCGTAAGTGTAGAACATAGTGAATTGCAGGAAACCACTCTCACCAGTCACTCACATATCCGTTCATGTATGACCATGCTTTTATGTATTTTGGTGAAGTTCATTAATTGATGATTACTTTTGAAGATGCTTGGAGTAAAGAGGATTGAACGTGTGCTGCCAGTTGGTACTCCTTTGACTGTTGTTGGCGAGGTATGATATGCCTTTTGAGCAGAAAAAGTTGCAACATTTTCATAGAAGTAACACAAATTAACAGAATTCAGATGATACGAGTAGCAACTCTCTGTCAGCTTATTCTTTAGTCGTTCACTATGTATTCTCAACACTGATGTCATAAAAAATGTATTCCTGACACTAACTGTAAATAGAATTGATGACAGCTAAGAAGAATGATAGTGAAACAAAACACCTTCTATATACTTAATTAATTCTCAACACCTTCTATATACTTAATTACTTCTCAACACCTTCTATATAGTTCTTTATTTTCTGTAAGGTAACTCTTAGTGTAGTTTCCAGAGATCTTTGTTGCATCACGTTATTGTGGTTATTGGAAGGAAAGAAGAACAAGAACAATTACAAGAGGTGACTTCCAGAGAGGATTCAACAATAGAACAAACTCAAAATGATCCAAGAGTTGCATATATTTAACTAACTGGTTAAATGGTGCACGTCCTTGAATTACATAAAATACATATCAAGACCTATGGACATCCTCAATATATATAAAATGATTCAGTTGTTTTGTCACAGTCGAGTGGAAGCAAGCATGCAGAGTTTAGACTTTCTTTTAATGTGTCATTCCTTGTGTTCTTCATGGTCATCATGACCTGATTGGTAGAGAATAGTTTTAAAGGGAAATAATAAAAATAGCAAATAGATTATAGAAATAGCTATCAAGGAAATAAGAGGATCAAAATGCATCCAATATTACAAGTATACTTTAGTTATACTTGAGCATTCATTGTTCACTTCTACTACATTACTCTGCTTGAACACTAGTTGACCCTTCTCTGTGTGCGCCAAGGGGGCTGGATGCATATAAGAGCTGTCTGTATATTGTGTATCAACTTCATTTTCCTTTGTGATTGTATCAGGCTGTCAAAGATGACATTGGG</genome_strand>
        <mrna_strand>GAGG--GATAAAGAGCATGAACATAACTGCACTCTCAAGTTTCCTCTCAACCACTCTTAGCATCTTATGGAGTGTCAGCTTCTTCAAATTCCTTTTATTTTTTAATCCCAATTTGTCTCTTCAGTTTTACTGTTATAAAGCCACATATGCTCTGCCCTTCTGTAATTGCTCTATTTTTGTTTTTCCATGATTGCTTGTCGCCTGAAACTTGTGTTGCTTAGTCATAATTTCATTCGTTAGGTTTAGGTTCTATTATCCCTTCGAGCTACCGGAAATGGTTCCATGGGCCGGACTCTCTTGCTGTTTGAGTGCAGCTGCTCTTTACCTTCTCGGTAGGAGCAGTGGAAG.....................................................................................AGATGCTGAAGTTCTTAAATCCGTTACAAGGGTTAATCAATTGAAGGATCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAACTACTAGATACTGCATCCAAGGTGTTGCCTCTGGTGGTTACTATATCTGGAAGGGTTGGATCAGATACACCAATTAACTGTGAGTACAGTGGTCTACGAGGCGTGATTGTGGAAGAAACT........................................................................................GCCGAACAACATTTTCTGAAACACAATGATGCAGGTTCTTGGATACAGGATTCTGCCTTGATGCTCTCAATGTGTAAAGAAGTTCCGTGGTACCTG..........................................................................................................................GATGATGGCACAGGTCGCACTTTTATTGTTGGTGGCCGTGGTGCCACGGGTTTGGTACTGACAGTTGGAAGTGAAGCCTTCGAGGAAGCAGGGAGATCATTTGTGCGAGGGACATTGGATTATCTTCAAGGTCTTAAG.............................................................................................................................................................................................................................................................................ATGCTTGGAGTAAAGAGGATTGAACGTGTGCTGCCAGTTGGTACTCCTTTGACTGTTGTTGGCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTCAAAGATGACATTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437739" ref_strand="+" ref_description="SGN-E437739 [cSTA-4-J22]">
      <seq>gtgcccttttgtaattgctctctcctatttttgttcttctatgattgcttctcgccttaaacttgtgttgcttagtcataatttcattcgttaggtctaggttttattatcccggaaatggttccatggggcggactctcttgctgtttgagtgcagctgctctttaccttctcggcaggagcagtggaagagatgctgaagtgcttaaatccgttacaagggttaatcaattgaaggatcttgcacaactactagatactgcatccaaggtgttgcctctggtggttactatatctggaagggttggatcagatacaccaattaactgtgagtacagtggtctacgaggcgtgattgtggaagaaactgccgaacaacattttctgaaacacaatgatgcaggctcttggatacaggattctgctttgatgctctcaatgtgtaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114726" stop="116611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115028" g_stop="115205" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="191" r_length="167" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115206" i_stop="115290" i_length="85">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115291" g_stop="115343" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="244" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115344" i_stop="116019" i_length="676">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.690" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116020" g_stop="116144" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="369" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116145" i_stop="116232" i_length="88">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116233" g_stop="116311" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="448" r_length="79" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E437739" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115028" e_stop="115205"/>
          <exon e_start="115291" e_stop="115343"/>
          <exon e_start="116020" e_stop="116144"/>
          <exon e_start="116233" e_stop="116311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTTTTGTTTTTCCATGATTGCTTGTCGCCTGAAACTTGTGTTGCTTAGTCATAATTTCATTCGTTAGGTTTAGGTTCTATTATCCCTTCGAGCTACCGGAAATGGTTCCATGGGCCGGACTCTCTTGCTGTTTGAGTGCAGCTGCTCTTTACCTTCTCGGTAGGAGCAGTGGAAGGTTTGAACTTCTCTTCTTCCAATTTCATTGCTCTACTGTGTATATTTATGTCCATGAATTTAGATGGATTTGATTTCTAATACAGAGATGCTGAAGTTCTTAAATCCGTTACAAGGGTTAATCAATTGAAGGATCTTGGTAAGTAAATTTGTAATTTCATATGGATGGCTTAGTCTCTCCGCTAATTACTTTCAGCAGACGTTTCAATTACCAGTACAAGGAGGTTGCGTCATATCTTTACTGCATCCATCGTTCATAAGAAAAAGAACTAACTTTTTATCCATTGGGAAAAGAGCAGATGGATTTTTAGTTTTAGTGTGTGATATCATGCTACACTTGTAACTCATTTGAGGTAGTATGTTCGACCATAGGGAAAATTTCTATTTTGGCACCAAATGAGAGTCAGGCAGTGTTAGATGATATACTTAGGCGCATCAGTCCCATGGTAAGTTCGAGTAAATTGGGGATACTATTCAAAGTGGATGGAGGAAAGGTGTGTGACCATGCAAATTGAGTTTCCTCTTTTAACTGGATGGATCTCCTTTTGGTTTCTCTACGAGTAGTAGAGGCATTAGACAAGGATATCCTCATCTTCCTGTGTTCCTTTTAGTTATGAAGGTGCTCAGCGAATTAGTGGAGTAGCTGAGAACATGAGGCTGTTCATGATATTTGAAAGAGGGATATCTGTTAGATCAGAGGCATTACAAATTCTAGAATATAGAACTTAATATTGGATAGTTGTATATATCTTATTGTACCTTTTGTTAGTGCATTCTCTCAACCTTGAATTATCTTTGTACTCCTTTTATTTTAGCACAACTACTAGATACTGCATCCAAGGTGTTGCCTCTGGTGGTTACTATATCTGGAAGGGTTGGATCAGATACACCAATTAACTGTGAGTACAGTGGTCTACGAGGCGTGATTGTGGAAGAAACTGTATGTTATCTCGTTCTTTAAATAATAGCATAAAATGTTTGTTTTCTTTTCAATGATGTTTTGTTAAATGTTCTTGATATTATTACAGGCCGAACAACATTTTCTGAAACACAATGATGCAGGTTCTTGGATACAGGATTCTGCCTTGATGCTCTCAATGTGTAAAG</genome_strand>
        <mrna_strand>CTATTTTTGTTCTTCTATGATTGCTTCTCGCCTTAAACTTGTGTTGCTTAGTCATAATTTCATTCGTTAGGTCTAGGTTTTATTAT-CC--CG-G--A-----AATGGTTCCATGGGGCGGACTCTCTTGCTGTTTGAGTGCAGCTGCTCTTTACCTTCTCGGCAGGAGCAGTGGAAG.....................................................................................AGATGCTGAAGTGCTTAAATCCGTTACAAGGGTTAATCAATTGAAGGATCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAACTACTAGATACTGCATCCAAGGTGTTGCCTCTGGTGGTTACTATATCTGGAAGGGTTGGATCAGATACACCAATTAACTGTGAGTACAGTGGTCTACGAGGCGTGATTGTGGAAGAAACT........................................................................................GCCGAACAACATTTTCTGAAACACAATGATGCAGGCTCTTGGATACAGGATTCTGCTTTGATGCTCTCAATGTGTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585001" ref_strand="+" ref_description="SGN-E585001 [66718]">
      <seq>gctgtttgagtgcagctgctctttaccttctcggcaggagcagtggaagagatgctgaagtgcttaaatccgttacaagggttaatcaattgaaggatctcgcacaactactagatactgcatccaaggtgttgcctctggtggttactatatctggaagggttggatcagatacaccaattaactgtgagtacagtggtctacgaggcgtgattgtggaagaaactgccgaacaacattttctgaaacacaatgatgcaggctcttggatacaggattctgctttgatgctctcaatgtgtaaagaagttccgtggtacctggatgatggcacaggtcgcacttttgtagttggtggccgtggtgccacgggtttggtactgacagttggaagtgaagtctttgaggaagcagggcgatcatttgtgcgagggacattggattatcttcaaggtcttaagatgcttggagtgaagaggattgaacgtgtgctgccagttggtactcctttgactgttgttggcgaggctgtcaaagatgacattgggacagttcggatccagcgaccacacaaaggcccgttttatatctctcataaaactattgaccagctcattgcaaatcttgggagatgggcaaggtggtacaagtatgcttcaatgggttttactgccgtcggtgtatatctacttgtgaagcatacttttcattatatgatggaaagaaagcgccactgggaattgcgcaggagagttcttgctgctgctgctaaaagagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114857" stop="121278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115157" g_stop="115205" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115206" i_stop="115290" i_length="85">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115291" g_stop="115343" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="102" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115344" i_stop="116019" i_length="676">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.690" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116020" g_stop="116144" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="227" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116145" i_stop="116232" i_length="88">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116233" g_stop="116328" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="323" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116329" i_stop="116450" i_length="122">
            <donor d_prob="0.738" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116451" g_stop="116588" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="461" r_length="138" r_score="0.964"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="116589" i_stop="116857" i_length="269">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="116858" g_stop="116923" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="527" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="116924" i_stop="117828" i_length="905">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="117829" g_stop="117941" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="640" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="117942" i_stop="118271" i_length="330">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="118272" g_stop="118382" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="751" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="118383" i_stop="120950" i_length="2568">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="120951" g_stop="120978" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="779" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E585001" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115157" e_stop="115205"/>
          <exon e_start="115291" e_stop="115343"/>
          <exon e_start="116020" e_stop="116144"/>
          <exon e_start="116233" e_stop="116328"/>
          <exon e_start="116451" e_stop="116588"/>
          <exon e_start="116858" e_stop="116923"/>
          <exon e_start="117829" e_stop="117941"/>
          <exon e_start="118272" e_stop="118382"/>
          <exon e_start="120951" e_stop="120978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTTGAGTGCAGCTGCTCTTTACCTTCTCGGTAGGAGCAGTGGAAGGTTTGAACTTCTCTTCTTCCAATTTCATTGCTCTACTGTGTATATTTATGTCCATGAATTTAGATGGATTTGATTTCTAATACAGAGATGCTGAAGTTCTTAAATCCGTTACAAGGGTTAATCAATTGAAGGATCTTGGTAAGTAAATTTGTAATTTCATATGGATGGCTTAGTCTCTCCGCTAATTACTTTCAGCAGACGTTTCAATTACCAGTACAAGGAGGTTGCGTCATATCTTTACTGCATCCATCGTTCATAAGAAAAAGAACTAACTTTTTATCCATTGGGAAAAGAGCAGATGGATTTTTAGTTTTAGTGTGTGATATCATGCTACACTTGTAACTCATTTGAGGTAGTATGTTCGACCATAGGGAAAATTTCTATTTTGGCACCAAATGAGAGTCAGGCAGTGTTAGATGATATACTTAGGCGCATCAGTCCCATGGTAAGTTCGAGTAAATTGGGGATACTATTCAAAGTGGATGGAGGAAAGGTGTGTGACCATGCAAATTGAGTTTCCTCTTTTAACTGGATGGATCTCCTTTTGGTTTCTCTACGAGTAGTAGAGGCATTAGACAAGGATATCCTCATCTTCCTGTGTTCCTTTTAGTTATGAAGGTGCTCAGCGAATTAGTGGAGTAGCTGAGAACATGAGGCTGTTCATGATATTTGAAAGAGGGATATCTGTTAGATCAGAGGCATTACAAATTCTAGAATATAGAACTTAATATTGGATAGTTGTATATATCTTATTGTACCTTTTGTTAGTGCATTCTCTCAACCTTGAATTATCTTTGTACTCCTTTTATTTTAGCACAACTACTAGATACTGCATCCAAGGTGTTGCCTCTGGTGGTTACTATATCTGGAAGGGTTGGATCAGATACACCAATTAACTGTGAGTACAGTGGTCTACGAGGCGTGATTGTGGAAGAAACTGTATGTTATCTCGTTCTTTAAATAATAGCATAAAATGTTTGTTTTCTTTTCAATGATGTTTTGTTAAATGTTCTTGATATTATTACAGGCCGAACAACATTTTCTGAAACACAATGATGCAGGTTCTTGGATACAGGATTCTGCCTTGATGCTCTCAATGTGTAAAGAAGTTCCGTGGTACCTGGTTGGAATGACTTCCTTTTGTCTTTTTATCTTAATAGTCCTGTAGGCTGTTTAAATGAATTCTTAAGAATTCTGCTTTACTTTGATGTATGAATTTTTAATAGTTTTTGACTTGTGTACCAGGATGATGGCACAGGTCGCACTTTTATTGTTGGTGGCCGTGGTGCCACGGGTTTGGTACTGACAGTTGGAAGTGAAGCCTTCGAGGAAGCAGGGAGATCATTTGTGCGAGGGACATTGGATTATCTTCAAGGTCTTAAGGTCTGTTTTATCATATAACTGCTGTTTGTTGCAGGTTGTAATTTGTATTTTCATAACTCTTGTGTCTAAAAAAATTTTGAAGGTAACTTTGACTCTGACCTATTATTTTCACAAGTAGGAGGCCAACGCCATTTTTAATTAGCGTCGTAAGTGTAGAACATAGTGAATTGCAGGAAACCACTCTCACCAGTCACTCACATATCCGTTCATGTATGACCATGCTTTTATGTATTTTGGTGAAGTTCATTAATTGATGATTACTTTTGAAGATGCTTGGAGTAAAGAGGATTGAACGTGTGCTGCCAGTTGGTACTCCTTTGACTGTTGTTGGCGAGGTATGATATGCCTTTTGAGCAGAAAAAGTTGCAACATTTTCATAGAAGTAACACAAATTAACAGAATTCAGATGATACGAGTAGCAACTCTCTGTCAGCTTATTCTTTAGTCGTTCACTATGTATTCTCAACACTGATGTCATAAAAAATGTATTCCTGACACTAACTGTAAATAGAATTGATGACAGCTAAGAAGAATGATAGTGAAACAAAACACCTTCTATATACTTAATTAATTCTCAACACCTTCTATATACTTAATTACTTCTCAACACCTTCTATATAGTTCTTTATTTTCTGTAAGGTAACTCTTAGTGTAGTTTCCAGAGATCTTTGTTGCATCACGTTATTGTGGTTATTGGAAGGAAAGAAGAACAAGAACAATTACAAGAGGTGACTTCCAGAGAGGATTCAACAATAGAACAAACTCAAAATGATCCAAGAGTTGCATATATTTAACTAACTGGTTAAATGGTGCACGTCCTTGAATTACATAAAATACATATCAAGACCTATGGACATCCTCAATATATATAAAATGATTCAGTTGTTTTGTCACAGTCGAGTGGAAGCAAGCATGCAGAGTTTAGACTTTCTTTTAATGTGTCATTCCTTGTGTTCTTCATGGTCATCATGACCTGATTGGTAGAGAATAGTTTTAAAGGGAAATAATAAAAATAGCAAATAGATTATAGAAATAGCTATCAAGGAAATAAGAGGATCAAAATGCATCCAATATTACAAGTATACTTTAGTTATACTTGAGCATTCATTGTTCACTTCTACTACATTACTCTGCTTGAACACTAGTTGACCCTTCTCTGTGTGCGCCAAGGGGGCTGGATGCATATAAGAGCTGTCTGTATATTGTGTATCAACTTCATTTTCCTTTGTGATTGTATCAGGCTGTCAAAGATGACATTGGGACAGTTCGGATCCAGCGACCACACAAAGGCCCATTTTATATCTCTCATAAAACTATTGACCAGCTCATTGCAAATCTTGGGAGATGGGCAAGGTTGATATGCTGTACTTTCGAACTGTAATCAACCCTATATTCCCCTACTAATTTTACATATTTTTTCACATGCCCATATCCAATCTTATGTTCAAGCTCATAGACATGAGTACGTTCTACTTCAATTAGGTTGGTAGTGTACTTTGTAGGGTCTGTATCAAGTACCCTTTCCACTATCATATCTGTTCAACAAAGATATGTCTAGAAAAATAAAAGTTCATGAATTGACTTGCATGAACATATCTATTCCCCCATGAGTATGTCAAGGCGCCCCCAGGATTTGTTTGTTTTAGCCTCGTACATAGTATTGATAAGTTCTTTTACTTTCAGGTGGTACAAGTATGCTTCAATGGGTTTTACTGCTGTCGGTGTATATCTACTTGTGAAGCATACTTTTCATTATATGATGGAAAGAAAGCGTCACTGGGAATTGCGCAGGAGGTATATTTAGGCCAAGACTTCTAAAACTGCAGTCTTTTATCTTTTTTTTTTCTTTTGCCCCTTACTAATCCTCCCTTCTGAGTTTTGTATCTATCAAAGCACTACTTAAATGTTTGGGTACATTAGAGATGCTTGTACAATTTACTATAGGGTAGGTGCTGCAACTTGTACCTCAGTATACTTTCTGTTCATGATTGATTTCAAGGATAAGCTGAGATGCAACAGTTTAAGATGTCTCTTCTTTGCCTGTGTCCCTTGCTCAATTGGGGCATAACATGAGCTGCTGGGAAAAGATGCTTTGGGAGATGTCAAGGTGCCTGCAAGCTGGACTAAGCGCCACAATTTTTAAAAAAGATATGCTTCAGAGATGGTAAAGCCAGATTTGTAGTAATTTAGAGATGAGGATTTGATGCAGTACTAGAAAGAGGACAGAGGGACGAGATAGAGGGTATAAATTAGCAAGGGGAGAAAGAGGGAAAGTTAACAGGAGAGCGAGAGAAAGGACAGAATCTATTACAGGGAGTTATTTACGAAGTGTTTGTTCATAAACTGCATTAGAGTTTAGTGACAACAAATTAGAAAGTACCTAAAATGACAAAATACTAGGAGCTTTCAATGCATATAAACAATGGGTGCATATTCCATTTTCATGCACAAAATGTACTTCGTGTGTTAGAAAGGAGGCATAATTTGAAGATGCCATTGGTAGGGACAGGAAAAATCTTTAGGGGTCGTTTGGTTGGGAATTAGTTATCCCAGGATTAACTATCCCGGGATTAGCTATCCTGGGATAACTTATCTCACCATGTATATTGATTAACTTTTCCCATCACTATGATATAAATGGTGGGATGAGTTATTCCCAAACAACATAATTTTTTTCATTTCGTCACTATTTCCTTATCCCATCACTATTATTTTTAATTCCTCACACCAAACGAGTCCTTAGACTTTACCTATTATCAGGTTCTTACGCATAATGCACCCCTCTCAAATAAGAAAGCACCATATTCTGGATACTACTAAAAGTTGAGGAAGACATGTTATACTGAATTGTAATAGAAAATGAGGAAGATCTTTATATCATGCTCTTTTCCACATGGGAGAGATGGACTTTTTTTCTGAGGGCAGCAACGATGATGAGGTTTGTGCCCAAGAATAGGCTATACATGTGTATCTTGATTGGATGTTTTCAGTCCGTTGACTCGCCCTTCCTGAGAATGAATGGAGTAAATTACTATGAACACATATTTTGATGAATGCCACTAACACCAAATTGCAGGACCCAATTCTTAGATAAGCAAAGTGTAGCAGGCTAAGGTGAGCGTTAGCCCCTTAAAATATTTGTGACCTAGTATTTTTCAGCTTAAGGTAATTTTCTTGGTATTTACCTCCTTCCTACTTTGTGAAGAGCTTGATATTTAGCCTGTATGGCACTTATGTGAGTATTTTGGTGGAACAGAATTGGAGAGTTTTTGAAGGGTGGAATATGACTTTGCATTGCTTAGGCTTGCCTTTTATTATTGATTAACTTTTGGCACACCCACGAGGTCCCTGTTAGTATAGATGAATTATTATCTTATCATAGAGAAGTGTTATTTTATGGGAGTTGTCTACTTTTTGGTACACATATTGTCTAACATGTTTTCTCCTCATAACATCAGTAAGCTGTTAATTTTTTATTTTTTTTCGAAAGCTTTGTGTCGGAGGTTCATCAGTTATGGAGCTTGTTAAACCAAACAAAAAATGTCGGTGATTCTTTTTGATACATATTTGATAACGGTACTGACTACTGACAATGATGAGTAACACCAAGAAGGTGCAAGAGCAAACTTACAAAAATGACAAGTGTTGCATTCACATCCATTCTCAAGATAATTGAACTTCATCTCCGCTTTACCTACAAATATAATTAAATTCCCAGCTAATTACGGTGCCGCCACATAATAGGAAAGATAAAGCAGTATGGCATACTTTGTGCATTTTTTTCATGTTAGTAGATTTATTACAAATCTAGCACTTTTGTATAAGGTCCTTATAGGGAATGTTATCCTTAGTTTATCCTGGCTAGTATAGGATATAGACATATGACTTGCATATGTATGTCCTTTTATTGGCTTTCTCTCTAGTTTTGGTGAATTCTTGATTCTATTAGTGAGAACTTCATTTTGGCTAATATGATGCTTGTTTTTATGAGGTTGAGATTGATTAGGTTGGTCAATCCAATTAACATCAACTTAAAACAGTCCTGAGTAGTGTAACTTTGCTCTTCTGTTTTCCCTTTAAAATTTCCAATCCTGCAAGGTTGACTCATCTGGTTTAGGATGTGACCTTGCCAAAAGTTCTGGTGGTCTAGATTTCTTAACAGAACTCTTTTGGCTTTAAACATCTTGAAATATGGATAGATTGTGTTCCTTCCATTTTTATGTTCATATATTGCTGGATTTCTTCCATTGATGTTGTTACAACACCGTACATTTCAACTAACAGTTTTGACTTTTTGGTTTTTCCTTTATTTTACCTTTTTTGAGTGATAATCCTAAATTTGAGAAACACTTGCACGTGCAGAGTTCTTGCTGCTGCTGCTAAAAGAGCA</genome_strand>
        <mrna_strand>GCTGTTTGAGTGCAGCTGCTCTTTACCTTCTCGGCAGGAGCAGTGGAAG.....................................................................................AGATGCTGAAGTGCTTAAATCCGTTACAAGGGTTAATCAATTGAAGGATCTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAACTACTAGATACTGCATCCAAGGTGTTGCCTCTGGTGGTTACTATATCTGGAAGGGTTGGATCAGATACACCAATTAACTGTGAGTACAGTGGTCTACGAGGCGTGATTGTGGAAGAAACT........................................................................................GCCGAACAACATTTTCTGAAACACAATGATGCAGGCTCTTGGATACAGGATTCTGCTTTGATGCTCTCAATGTGTAAAGAAGTTCCGTGGTACCTG..........................................................................................................................GATGATGGCACAGGTCGCACTTTTGTAGTTGGTGGCCGTGGTGCCACGGGTTTGGTACTGACAGTTGGAAGTGAAGTCTTTGAGGAAGCAGGGCGATCATTTGTGCGAGGGACATTGGATTATCTTCAAGGTCTTAAG.............................................................................................................................................................................................................................................................................ATGCTTGGAGTGAAGAGGATTGAACGTGTGCTGCCAGTTGGTACTCCTTTGACTGTTGTTGGCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTCAAAGATGACATTGGGACAGTTCGGATCCAGCGACCACACAAAGGCCCGTTTTATATCTCTCATAAAACTATTGACCAGCTCATTGCAAATCTTGGGAGATGGGCAAG..........................................................................................................................................................................................................................................................................................................................................GTGGTACAAGTATGCTTCAATGGGTTTTACTGCCGTCGGTGTATATCTACTTGTGAAGCATACTTTTCATTATATGATGGAAAGAAAGCGCCACTGGGAATTGCGCAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCTTGCTGCTGCTGCTAAAAGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395703" ref_strand="+" ref_description="SGN-E395703 [TUS-17-M8]">
      <seq>attctctcaaccttgaattatctttgtactccttttattttagcacaactactagatactgcatccaaggtgttgcctctggtggttactatatctggaagggttggatcagatacaccaattaactgtgagtacagtggtctacgaggcgtgattgtggaagaaactgccgaacaacattttctgaaacacaatgatgcaggttcttggatacaggattctgccttgatgctctcaatgtgtaaagaagttccgtggtacctggatgatggcacaggtcgcacttttattgttggtggccgtggtgccacgggtttggtactgacagttggaagtgaagccttcgaggaagcagggagatcatttgtgcgagggacattggattatcttcaaggtcttaagatgcttggagtaaagaggattgaacgtgtgctgccagttggtactcctttgactgttgttggcgaggtggtacaagtatgcttcaatgggttttactgctgtcggtgtatatctacttgtgaagcatacttttcattatatgatggaaagaaagcgtcactgggaattgcccaggaaagttcttgctgctgctgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="115677" stop="121270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115977" g_stop="116144" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116145" i_stop="116232" i_length="88">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116233" g_stop="116328" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="264" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116329" i_stop="116450" i_length="122">
            <donor d_prob="0.738" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116451" g_stop="116588" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="402" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116589" i_stop="116857" i_length="269">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116858" g_stop="116923" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="468" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116924" i_stop="118271" i_length="1348">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118272" g_stop="118382" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="579" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118383" i_stop="120950" i_length="2568">
            <donor d_prob="0.972" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="120951" g_stop="120970" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="599" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E395703" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115977" e_stop="116144"/>
          <exon e_start="116233" e_stop="116328"/>
          <exon e_start="116451" e_stop="116588"/>
          <exon e_start="116858" e_stop="116923"/>
          <exon e_start="118272" e_stop="118382"/>
          <exon e_start="120951" e_stop="120970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCTCAACCTTGAATTATCTTTGTACTCCTTTTATTTTAGCACAACTACTAGATACTGCATCCAAGGTGTTGCCTCTGGTGGTTACTATATCTGGAAGGGTTGGATCAGATACACCAATTAACTGTGAGTACAGTGGTCTACGAGGCGTGATTGTGGAAGAAACTGTATGTTATCTCGTTCTTTAAATAATAGCATAAAATGTTTGTTTTCTTTTCAATGATGTTTTGTTAAATGTTCTTGATATTATTACAGGCCGAACAACATTTTCTGAAACACAATGATGCAGGTTCTTGGATACAGGATTCTGCCTTGATGCTCTCAATGTGTAAAGAAGTTCCGTGGTACCTGGTTGGAATGACTTCCTTTTGTCTTTTTATCTTAATAGTCCTGTAGGCTGTTTAAATGAATTCTTAAGAATTCTGCTTTACTTTGATGTATGAATTTTTAATAGTTTTTGACTTGTGTACCAGGATGATGGCACAGGTCGCACTTTTATTGTTGGTGGCCGTGGTGCCACGGGTTTGGTACTGACAGTTGGAAGTGAAGCCTTCGAGGAAGCAGGGAGATCATTTGTGCGAGGGACATTGGATTATCTTCAAGGTCTTAAGGTCTGTTTTATCATATAACTGCTGTTTGTTGCAGGTTGTAATTTGTATTTTCATAACTCTTGTGTCTAAAAAAATTTTGAAGGTAACTTTGACTCTGACCTATTATTTTCACAAGTAGGAGGCCAACGCCATTTTTAATTAGCGTCGTAAGTGTAGAACATAGTGAATTGCAGGAAACCACTCTCACCAGTCACTCACATATCCGTTCATGTATGACCATGCTTTTATGTATTTTGGTGAAGTTCATTAATTGATGATTACTTTTGAAGATGCTTGGAGTAAAGAGGATTGAACGTGTGCTGCCAGTTGGTACTCCTTTGACTGTTGTTGGCGAGGTATGATATGCCTTTTGAGCAGAAAAAGTTGCAACATTTTCATAGAAGTAACACAAATTAACAGAATTCAGATGATACGAGTAGCAACTCTCTGTCAGCTTATTCTTTAGTCGTTCACTATGTATTCTCAACACTGATGTCATAAAAAATGTATTCCTGACACTAACTGTAAATAGAATTGATGACAGCTAAGAAGAATGATAGTGAAACAAAACACCTTCTATATACTTAATTAATTCTCAACACCTTCTATATACTTAATTACTTCTCAACACCTTCTATATAGTTCTTTATTTTCTGTAAGGTAACTCTTAGTGTAGTTTCCAGAGATCTTTGTTGCATCACGTTATTGTGGTTATTGGAAGGAAAGAAGAACAAGAACAATTACAAGAGGTGACTTCCAGAGAGGATTCAACAATAGAACAAACTCAAAATGATCCAAGAGTTGCATATATTTAACTAACTGGTTAAATGGTGCACGTCCTTGAATTACATAAAATACATATCAAGACCTATGGACATCCTCAATATATATAAAATGATTCAGTTGTTTTGTCACAGTCGAGTGGAAGCAAGCATGCAGAGTTTAGACTTTCTTTTAATGTGTCATTCCTTGTGTTCTTCATGGTCATCATGACCTGATTGGTAGAGAATAGTTTTAAAGGGAAATAATAAAAATAGCAAATAGATTATAGAAATAGCTATCAAGGAAATAAGAGGATCAAAATGCATCCAATATTACAAGTATACTTTAGTTATACTTGAGCATTCATTGTTCACTTCTACTACATTACTCTGCTTGAACACTAGTTGACCCTTCTCTGTGTGCGCCAAGGGGGCTGGATGCATATAAGAGCTGTCTGTATATTGTGTATCAACTTCATTTTCCTTTGTGATTGTATCAGGCTGTCAAAGATGACATTGGGACAGTTCGGATCCAGCGACCACACAAAGGCCCATTTTATATCTCTCATAAAACTATTGACCAGCTCATTGCAAATCTTGGGAGATGGGCAAGGTTGATATGCTGTACTTTCGAACTGTAATCAACCCTATATTCCCCTACTAATTTTACATATTTTTTCACATGCCCATATCCAATCTTATGTTCAAGCTCATAGACATGAGTACGTTCTACTTCAATTAGGTTGGTAGTGTACTTTGTAGGGTCTGTATCAAGTACCCTTTCCACTATCATATCTGTTCAACAAAGATATGTCTAGAAAAATAAAAGTTCATGAATTGACTTGCATGAACATATCTATTCCCCCATGAGTATGTCAAGGCGCCCCCAGGATTTGTTTGTTTTAGCCTCGTACATAGTATTGATAAGTTCTTTTACTTTCAGGTGGTACAAGTATGCTTCAATGGGTTTTACTGCTGTCGGTGTATATCTACTTGTGAAGCATACTTTTCATTATATGATGGAAAGAAAGCGTCACTGGGAATTGCGCAGGAGGTATATTTAGGCCAAGACTTCTAAAACTGCAGTCTTTTATCTTTTTTTTTTCTTTTGCCCCTTACTAATCCTCCCTTCTGAGTTTTGTATCTATCAAAGCACTACTTAAATGTTTGGGTACATTAGAGATGCTTGTACAATTTACTATAGGGTAGGTGCTGCAACTTGTACCTCAGTATACTTTCTGTTCATGATTGATTTCAAGGATAAGCTGAGATGCAACAGTTTAAGATGTCTCTTCTTTGCCTGTGTCCCTTGCTCAATTGGGGCATAACATGAGCTGCTGGGAAAAGATGCTTTGGGAGATGTCAAGGTGCCTGCAAGCTGGACTAAGCGCCACAATTTTTAAAAAAGATATGCTTCAGAGATGGTAAAGCCAGATTTGTAGTAATTTAGAGATGAGGATTTGATGCAGTACTAGAAAGAGGACAGAGGGACGAGATAGAGGGTATAAATTAGCAAGGGGAGAAAGAGGGAAAGTTAACAGGAGAGCGAGAGAAAGGACAGAATCTATTACAGGGAGTTATTTACGAAGTGTTTGTTCATAAACTGCATTAGAGTTTAGTGACAACAAATTAGAAAGTACCTAAAATGACAAAATACTAGGAGCTTTCAATGCATATAAACAATGGGTGCATATTCCATTTTCATGCACAAAATGTACTTCGTGTGTTAGAAAGGAGGCATAATTTGAAGATGCCATTGGTAGGGACAGGAAAAATCTTTAGGGGTCGTTTGGTTGGGAATTAGTTATCCCAGGATTAACTATCCCGGGATTAGCTATCCTGGGATAACTTATCTCACCATGTATATTGATTAACTTTTCCCATCACTATGATATAAATGGTGGGATGAGTTATTCCCAAACAACATAATTTTTTTCATTTCGTCACTATTTCCTTATCCCATCACTATTATTTTTAATTCCTCACACCAAACGAGTCCTTAGACTTTACCTATTATCAGGTTCTTACGCATAATGCACCCCTCTCAAATAAGAAAGCACCATATTCTGGATACTACTAAAAGTTGAGGAAGACATGTTATACTGAATTGTAATAGAAAATGAGGAAGATCTTTATATCATGCTCTTTTCCACATGGGAGAGATGGACTTTTTTTCTGAGGGCAGCAACGATGATGAGGTTTGTGCCCAAGAATAGGCTATACATGTGTATCTTGATTGGATGTTTTCAGTCCGTTGACTCGCCCTTCCTGAGAATGAATGGAGTAAATTACTATGAACACATATTTTGATGAATGCCACTAACACCAAATTGCAGGACCCAATTCTTAGATAAGCAAAGTGTAGCAGGCTAAGGTGAGCGTTAGCCCCTTAAAATATTTGTGACCTAGTATTTTTCAGCTTAAGGTAATTTTCTTGGTATTTACCTCCTTCCTACTTTGTGAAGAGCTTGATATTTAGCCTGTATGGCACTTATGTGAGTATTTTGGTGGAACAGAATTGGAGAGTTTTTGAAGGGTGGAATATGACTTTGCATTGCTTAGGCTTGCCTTTTATTATTGATTAACTTTTGGCACACCCACGAGGTCCCTGTTAGTATAGATGAATTATTATCTTATCATAGAGAAGTGTTATTTTATGGGAGTTGTCTACTTTTTGGTACACATATTGTCTAACATGTTTTCTCCTCATAACATCAGTAAGCTGTTAATTTTTTATTTTTTTTCGAAAGCTTTGTGTCGGAGGTTCATCAGTTATGGAGCTTGTTAAACCAAACAAAAAATGTCGGTGATTCTTTTTGATACATATTTGATAACGGTACTGACTACTGACAATGATGAGTAACACCAAGAAGGTGCAAGAGCAAACTTACAAAAATGACAAGTGTTGCATTCACATCCATTCTCAAGATAATTGAACTTCATCTCCGCTTTACCTACAAATATAATTAAATTCCCAGCTAATTACGGTGCCGCCACATAATAGGAAAGATAAAGCAGTATGGCATACTTTGTGCATTTTTTTCATGTTAGTAGATTTATTACAAATCTAGCACTTTTGTATAAGGTCCTTATAGGGAATGTTATCCTTAGTTTATCCTGGCTAGTATAGGATATAGACATATGACTTGCATATGTATGTCCTTTTATTGGCTTTCTCTCTAGTTTTGGTGAATTCTTGATTCTATTAGTGAGAACTTCATTTTGGCTAATATGATGCTTGTTTTTATGAGGTTGAGATTGATTAGGTTGGTCAATCCAATTAACATCAACTTAAAACAGTCCTGAGTAGTGTAACTTTGCTCTTCTGTTTTCCCTTTAAAATTTCCAATCCTGCAAGGTTGACTCATCTGGTTTAGGATGTGACCTTGCCAAAAGTTCTGGTGGTCTAGATTTCTTAACAGAACTCTTTTGGCTTTAAACATCTTGAAATATGGATAGATTGTGTTCCTTCCATTTTTATGTTCATATATTGCTGGATTTCTTCCATTGATGTTGTTACAACACCGTACATTTCAACTAACAGTTTTGACTTTTTGGTTTTTCCTTTATTTTACCTTTTTTGAGTGATAATCCTAAATTTGAGAAACACTTGCACGTGCAGAGTTCTTGCTGCTGCTGCTA</genome_strand>
        <mrna_strand>ATTCTCTCAACCTTGAATTATCTTTGTACTCCTTTTATTTTAGCACAACTACTAGATACTGCATCCAAGGTGTTGCCTCTGGTGGTTACTATATCTGGAAGGGTTGGATCAGATACACCAATTAACTGTGAGTACAGTGGTCTACGAGGCGTGATTGTGGAAGAAACT........................................................................................GCCGAACAACATTTTCTGAAACACAATGATGCAGGTTCTTGGATACAGGATTCTGCCTTGATGCTCTCAATGTGTAAAGAAGTTCCGTGGTACCTG..........................................................................................................................GATGATGGCACAGGTCGCACTTTTATTGTTGGTGGCCGTGGTGCCACGGGTTTGGTACTGACAGTTGGAAGTGAAGCCTTCGAGGAAGCAGGGAGATCATTTGTGCGAGGGACATTGGATTATCTTCAAGGTCTTAAG.............................................................................................................................................................................................................................................................................ATGCTTGGAGTAAAGAGGATTGAACGTGTGCTGCCAGTTGGTACTCCTTTGACTGTTGTTGGCGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTACAAGTATGCTTCAATGGGTTTTACTGCTGTCGGTGTATATCTACTTGTGAAGCATACTTTTCATTATATGATGGAAAGAAAGCGTCACTGGGAATTGCCCAGGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCTTGCTGCTGCTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208267" ref_strand="+" ref_description="SGN-E208267 [cLEC-37-D6]">
      <seq>ttctctcaaccttgaattatctttgtactccttttattttagcacaactactagatactgcatccaaggtgttgcctctggtggttactatatctggaagggttggatcagatacaccaattaactgtgagtacagtggtctacgaggcgtgattgtggaagaaactgccgaacaacattttctgaaacacaatgatgcaggttcttggatacaggattctgccttgatgctctcaatgtgtaaagaagttccgtggtacctggatgatggcacaggtcgcacttttattgttggtggccgtggtgccacgggtttggtactgacagttggaagtgaagccttcgaggaagcagggagatcatttgtgcgagggacattggattatcttcaaggtcttaagatgcttggagtaaagaggattgaacgtgtgctgccagttggtactcctttgactgttgttggcgaggtggtacaagtatgcttcaatgggttttactgctgtcggngtatatctacttgtgaagcatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="115678" stop="118636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115978" g_stop="116144" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116145" i_stop="116232" i_length="88">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116233" g_stop="116328" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="263" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116329" i_stop="116450" i_length="122">
            <donor d_prob="0.738" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116451" g_stop="116588" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="401" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116589" i_stop="116857" i_length="269">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116858" g_stop="116923" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="467" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116924" i_stop="118271" i_length="1348">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118272" g_stop="118336" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="532" r_length="65" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E208267" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115978" e_stop="116144"/>
          <exon e_start="116233" e_stop="116328"/>
          <exon e_start="116451" e_stop="116588"/>
          <exon e_start="116858" e_stop="116923"/>
          <exon e_start="118272" e_stop="118336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCAACCTTGAATTATCTTTGTACTCCTTTTATTTTAGCACAACTACTAGATACTGCATCCAAGGTGTTGCCTCTGGTGGTTACTATATCTGGAAGGGTTGGATCAGATACACCAATTAACTGTGAGTACAGTGGTCTACGAGGCGTGATTGTGGAAGAAACTGTATGTTATCTCGTTCTTTAAATAATAGCATAAAATGTTTGTTTTCTTTTCAATGATGTTTTGTTAAATGTTCTTGATATTATTACAGGCCGAACAACATTTTCTGAAACACAATGATGCAGGTTCTTGGATACAGGATTCTGCCTTGATGCTCTCAATGTGTAAAGAAGTTCCGTGGTACCTGGTTGGAATGACTTCCTTTTGTCTTTTTATCTTAATAGTCCTGTAGGCTGTTTAAATGAATTCTTAAGAATTCTGCTTTACTTTGATGTATGAATTTTTAATAGTTTTTGACTTGTGTACCAGGATGATGGCACAGGTCGCACTTTTATTGTTGGTGGCCGTGGTGCCACGGGTTTGGTACTGACAGTTGGAAGTGAAGCCTTCGAGGAAGCAGGGAGATCATTTGTGCGAGGGACATTGGATTATCTTCAAGGTCTTAAGGTCTGTTTTATCATATAACTGCTGTTTGTTGCAGGTTGTAATTTGTATTTTCATAACTCTTGTGTCTAAAAAAATTTTGAAGGTAACTTTGACTCTGACCTATTATTTTCACAAGTAGGAGGCCAACGCCATTTTTAATTAGCGTCGTAAGTGTAGAACATAGTGAATTGCAGGAAACCACTCTCACCAGTCACTCACATATCCGTTCATGTATGACCATGCTTTTATGTATTTTGGTGAAGTTCATTAATTGATGATTACTTTTGAAGATGCTTGGAGTAAAGAGGATTGAACGTGTGCTGCCAGTTGGTACTCCTTTGACTGTTGTTGGCGAGGTATGATATGCCTTTTGAGCAGAAAAAGTTGCAACATTTTCATAGAAGTAACACAAATTAACAGAATTCAGATGATACGAGTAGCAACTCTCTGTCAGCTTATTCTTTAGTCGTTCACTATGTATTCTCAACACTGATGTCATAAAAAATGTATTCCTGACACTAACTGTAAATAGAATTGATGACAGCTAAGAAGAATGATAGTGAAACAAAACACCTTCTATATACTTAATTAATTCTCAACACCTTCTATATACTTAATTACTTCTCAACACCTTCTATATAGTTCTTTATTTTCTGTAAGGTAACTCTTAGTGTAGTTTCCAGAGATCTTTGTTGCATCACGTTATTGTGGTTATTGGAAGGAAAGAAGAACAAGAACAATTACAAGAGGTGACTTCCAGAGAGGATTCAACAATAGAACAAACTCAAAATGATCCAAGAGTTGCATATATTTAACTAACTGGTTAAATGGTGCACGTCCTTGAATTACATAAAATACATATCAAGACCTATGGACATCCTCAATATATATAAAATGATTCAGTTGTTTTGTCACAGTCGAGTGGAAGCAAGCATGCAGAGTTTAGACTTTCTTTTAATGTGTCATTCCTTGTGTTCTTCATGGTCATCATGACCTGATTGGTAGAGAATAGTTTTAAAGGGAAATAATAAAAATAGCAAATAGATTATAGAAATAGCTATCAAGGAAATAAGAGGATCAAAATGCATCCAATATTACAAGTATACTTTAGTTATACTTGAGCATTCATTGTTCACTTCTACTACATTACTCTGCTTGAACACTAGTTGACCCTTCTCTGTGTGCGCCAAGGGGGCTGGATGCATATAAGAGCTGTCTGTATATTGTGTATCAACTTCATTTTCCTTTGTGATTGTATCAGGCTGTCAAAGATGACATTGGGACAGTTCGGATCCAGCGACCACACAAAGGCCCATTTTATATCTCTCATAAAACTATTGACCAGCTCATTGCAAATCTTGGGAGATGGGCAAGGTTGATATGCTGTACTTTCGAACTGTAATCAACCCTATATTCCCCTACTAATTTTACATATTTTTTCACATGCCCATATCCAATCTTATGTTCAAGCTCATAGACATGAGTACGTTCTACTTCAATTAGGTTGGTAGTGTACTTTGTAGGGTCTGTATCAAGTACCCTTTCCACTATCATATCTGTTCAACAAAGATATGTCTAGAAAAATAAAAGTTCATGAATTGACTTGCATGAACATATCTATTCCCCCATGAGTATGTCAAGGCGCCCCCAGGATTTGTTTGTTTTAGCCTCGTACATAGTATTGATAAGTTCTTTTACTTTCAGGTGGTACAAGTATGCTTCAATGGGTTTTACTGCTGTCGGTGTATATCTACTTGTGAAGCATACTT</genome_strand>
        <mrna_strand>TTCTCTCAACCTTGAATTATCTTTGTACTCCTTTTATTTTAGCACAACTACTAGATACTGCATCCAAGGTGTTGCCTCTGGTGGTTACTATATCTGGAAGGGTTGGATCAGATACACCAATTAACTGTGAGTACAGTGGTCTACGAGGCGTGATTGTGGAAGAAACT........................................................................................GCCGAACAACATTTTCTGAAACACAATGATGCAGGTTCTTGGATACAGGATTCTGCCTTGATGCTCTCAATGTGTAAAGAAGTTCCGTGGTACCTG..........................................................................................................................GATGATGGCACAGGTCGCACTTTTATTGTTGGTGGCCGTGGTGCCACGGGTTTGGTACTGACAGTTGGAAGTGAAGCCTTCGAGGAAGCAGGGAGATCATTTGTGCGAGGGACATTGGATTATCTTCAAGGTCTTAAG.............................................................................................................................................................................................................................................................................ATGCTTGGAGTAAAGAGGATTGAACGTGTGCTGCCAGTTGGTACTCCTTTGACTGTTGTTGGCGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTACAAGTATGCTTCAATGGGTTTTACTGCTGTCGGNGTATATCTACTTGTGAAGCATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701831" ref_strand="+" ref_description="SGN-E701831 [FA17AC06]">
      <seq>gtgagtacagtggtctacgaggcgtgattgtggaagaaactgccgaacaacattttctgaaacacaatgatgcaggttcttggatacaggattctgccttgatgctctcaatgtgtaaagaagttccgtggtacctggatgatggcacaggtcgcacttttattgttggtggccgtggtgccacgggtttggtactgacagttggaagtgaagccttcgaggaagcagggagatcatttgtgcgagggacattggattatcttcaaggtcttaagatgcttggagtaaagaggattgaacgtgtgctgccagttggtactcctttgactgttgttggcgaggctgtcaaagatgacattgggacagttcggatccagcgaccacacaaaggcccattttatatctctcataaaactattgaccagctcattgcaaatcttgggagatgggcaaggtggtacaagtatgcttcaatgggttttactgctgtcggtgtatatctacttgtgaagcatacttttcattatatgatggaaagaaagcgtcactgggaattgcgcaggagagttcttgctgctgctgctaaaagagcaggagatgaggatgaaggttctgatgctacagctgagaatggagtggataataaggacctcttaatgccagatctatgtgttatatgtctggagcaggaatacaactcagtttttgtcccgtgtggtcatatgtgctgttgcatgacgtgctcttcacacttgacaaactgcccactatgtaggagacggatcgagcaggttgtgaaaacttttcgccattgagcaaaagctgccttgttgaaatggccattttctgactcgctcataaaaatcattcggatattaacttgtagattgtattgaaagctggattttgtcaaaagtttatgtcattatgatgaatgtataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="115804" stop="122501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116104" g_stop="116144" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116145" i_stop="116232" i_length="88">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116233" g_stop="116328" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="137" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116329" i_stop="116450" i_length="122">
            <donor d_prob="0.738" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116451" g_stop="116588" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="275" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116589" i_stop="116857" i_length="269">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116858" g_stop="116923" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="341" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116924" i_stop="117828" i_length="905">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117829" g_stop="117941" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="454" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="117942" i_stop="118271" i_length="330">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="118272" g_stop="118382" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="565" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="118383" i_stop="120950" i_length="2568">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="120951" g_stop="120994" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="609" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="120995" i_stop="121135" i_length="141">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="121136" g_stop="121238" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="712" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="121239" i_stop="121968" i_length="730">
            <donor d_prob="0.562" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="121969" g_stop="122198" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="941" r_length="229" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E701831" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>942</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116104" e_stop="116144"/>
          <exon e_start="116233" e_stop="116328"/>
          <exon e_start="116451" e_stop="116588"/>
          <exon e_start="116858" e_stop="116923"/>
          <exon e_start="117829" e_stop="117941"/>
          <exon e_start="118272" e_stop="118382"/>
          <exon e_start="120951" e_stop="120994"/>
          <exon e_start="121136" e_stop="121238"/>
          <exon e_start="121969" e_stop="122198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGTACAGTGGTCTACGAGGCGTGATTGTGGAAGAAACTGTATGTTATCTCGTTCTTTAAATAATAGCATAAAATGTTTGTTTTCTTTTCAATGATGTTTTGTTAAATGTTCTTGATATTATTACAGGCCGAACAACATTTTCTGAAACACAATGATGCAGGTTCTTGGATACAGGATTCTGCCTTGATGCTCTCAATGTGTAAAGAAGTTCCGTGGTACCTGGTTGGAATGACTTCCTTTTGTCTTTTTATCTTAATAGTCCTGTAGGCTGTTTAAATGAATTCTTAAGAATTCTGCTTTACTTTGATGTATGAATTTTTAATAGTTTTTGACTTGTGTACCAGGATGATGGCACAGGTCGCACTTTTATTGTTGGTGGCCGTGGTGCCACGGGTTTGGTACTGACAGTTGGAAGTGAAGCCTTCGAGGAAGCAGGGAGATCATTTGTGCGAGGGACATTGGATTATCTTCAAGGTCTTAAGGTCTGTTTTATCATATAACTGCTGTTTGTTGCAGGTTGTAATTTGTATTTTCATAACTCTTGTGTCTAAAAAAATTTTGAAGGTAACTTTGACTCTGACCTATTATTTTCACAAGTAGGAGGCCAACGCCATTTTTAATTAGCGTCGTAAGTGTAGAACATAGTGAATTGCAGGAAACCACTCTCACCAGTCACTCACATATCCGTTCATGTATGACCATGCTTTTATGTATTTTGGTGAAGTTCATTAATTGATGATTACTTTTGAAGATGCTTGGAGTAAAGAGGATTGAACGTGTGCTGCCAGTTGGTACTCCTTTGACTGTTGTTGGCGAGGTATGATATGCCTTTTGAGCAGAAAAAGTTGCAACATTTTCATAGAAGTAACACAAATTAACAGAATTCAGATGATACGAGTAGCAACTCTCTGTCAGCTTATTCTTTAGTCGTTCACTATGTATTCTCAACACTGATGTCATAAAAAATGTATTCCTGACACTAACTGTAAATAGAATTGATGACAGCTAAGAAGAATGATAGTGAAACAAAACACCTTCTATATACTTAATTAATTCTCAACACCTTCTATATACTTAATTACTTCTCAACACCTTCTATATAGTTCTTTATTTTCTGTAAGGTAACTCTTAGTGTAGTTTCCAGAGATCTTTGTTGCATCACGTTATTGTGGTTATTGGAAGGAAAGAAGAACAAGAACAATTACAAGAGGTGACTTCCAGAGAGGATTCAACAATAGAACAAACTCAAAATGATCCAAGAGTTGCATATATTTAACTAACTGGTTAAATGGTGCACGTCCTTGAATTACATAAAATACATATCAAGACCTATGGACATCCTCAATATATATAAAATGATTCAGTTGTTTTGTCACAGTCGAGTGGAAGCAAGCATGCAGAGTTTAGACTTTCTTTTAATGTGTCATTCCTTGTGTTCTTCATGGTCATCATGACCTGATTGGTAGAGAATAGTTTTAAAGGGAAATAATAAAAATAGCAAATAGATTATAGAAATAGCTATCAAGGAAATAAGAGGATCAAAATGCATCCAATATTACAAGTATACTTTAGTTATACTTGAGCATTCATTGTTCACTTCTACTACATTACTCTGCTTGAACACTAGTTGACCCTTCTCTGTGTGCGCCAAGGGGGCTGGATGCATATAAGAGCTGTCTGTATATTGTGTATCAACTTCATTTTCCTTTGTGATTGTATCAGGCTGTCAAAGATGACATTGGGACAGTTCGGATCCAGCGACCACACAAAGGCCCATTTTATATCTCTCATAAAACTATTGACCAGCTCATTGCAAATCTTGGGAGATGGGCAAGGTTGATATGCTGTACTTTCGAACTGTAATCAACCCTATATTCCCCTACTAATTTTACATATTTTTTCACATGCCCATATCCAATCTTATGTTCAAGCTCATAGACATGAGTACGTTCTACTTCAATTAGGTTGGTAGTGTACTTTGTAGGGTCTGTATCAAGTACCCTTTCCACTATCATATCTGTTCAACAAAGATATGTCTAGAAAAATAAAAGTTCATGAATTGACTTGCATGAACATATCTATTCCCCCATGAGTATGTCAAGGCGCCCCCAGGATTTGTTTGTTTTAGCCTCGTACATAGTATTGATAAGTTCTTTTACTTTCAGGTGGTACAAGTATGCTTCAATGGGTTTTACTGCTGTCGGTGTATATCTACTTGTGAAGCATACTTTTCATTATATGATGGAAAGAAAGCGTCACTGGGAATTGCGCAGGAGGTATATTTAGGCCAAGACTTCTAAAACTGCAGTCTTTTATCTTTTTTTTTTCTTTTGCCCCTTACTAATCCTCCCTTCTGAGTTTTGTATCTATCAAAGCACTACTTAAATGTTTGGGTACATTAGAGATGCTTGTACAATTTACTATAGGGTAGGTGCTGCAACTTGTACCTCAGTATACTTTCTGTTCATGATTGATTTCAAGGATAAGCTGAGATGCAACAGTTTAAGATGTCTCTTCTTTGCCTGTGTCCCTTGCTCAATTGGGGCATAACATGAGCTGCTGGGAAAAGATGCTTTGGGAGATGTCAAGGTGCCTGCAAGCTGGACTAAGCGCCACAATTTTTAAAAAAGATATGCTTCAGAGATGGTAAAGCCAGATTTGTAGTAATTTAGAGATGAGGATTTGATGCAGTACTAGAAAGAGGACAGAGGGACGAGATAGAGGGTATAAATTAGCAAGGGGAGAAAGAGGGAAAGTTAACAGGAGAGCGAGAGAAAGGACAGAATCTATTACAGGGAGTTATTTACGAAGTGTTTGTTCATAAACTGCATTAGAGTTTAGTGACAACAAATTAGAAAGTACCTAAAATGACAAAATACTAGGAGCTTTCAATGCATATAAACAATGGGTGCATATTCCATTTTCATGCACAAAATGTACTTCGTGTGTTAGAAAGGAGGCATAATTTGAAGATGCCATTGGTAGGGACAGGAAAAATCTTTAGGGGTCGTTTGGTTGGGAATTAGTTATCCCAGGATTAACTATCCCGGGATTAGCTATCCTGGGATAACTTATCTCACCATGTATATTGATTAACTTTTCCCATCACTATGATATAAATGGTGGGATGAGTTATTCCCAAACAACATAATTTTTTTCATTTCGTCACTATTTCCTTATCCCATCACTATTATTTTTAATTCCTCACACCAAACGAGTCCTTAGACTTTACCTATTATCAGGTTCTTACGCATAATGCACCCCTCTCAAATAAGAAAGCACCATATTCTGGATACTACTAAAAGTTGAGGAAGACATGTTATACTGAATTGTAATAGAAAATGAGGAAGATCTTTATATCATGCTCTTTTCCACATGGGAGAGATGGACTTTTTTTCTGAGGGCAGCAACGATGATGAGGTTTGTGCCCAAGAATAGGCTATACATGTGTATCTTGATTGGATGTTTTCAGTCCGTTGACTCGCCCTTCCTGAGAATGAATGGAGTAAATTACTATGAACACATATTTTGATGAATGCCACTAACACCAAATTGCAGGACCCAATTCTTAGATAAGCAAAGTGTAGCAGGCTAAGGTGAGCGTTAGCCCCTTAAAATATTTGTGACCTAGTATTTTTCAGCTTAAGGTAATTTTCTTGGTATTTACCTCCTTCCTACTTTGTGAAGAGCTTGATATTTAGCCTGTATGGCACTTATGTGAGTATTTTGGTGGAACAGAATTGGAGAGTTTTTGAAGGGTGGAATATGACTTTGCATTGCTTAGGCTTGCCTTTTATTATTGATTAACTTTTGGCACACCCACGAGGTCCCTGTTAGTATAGATGAATTATTATCTTATCATAGAGAAGTGTTATTTTATGGGAGTTGTCTACTTTTTGGTACACATATTGTCTAACATGTTTTCTCCTCATAACATCAGTAAGCTGTTAATTTTTTATTTTTTTTCGAAAGCTTTGTGTCGGAGGTTCATCAGTTATGGAGCTTGTTAAACCAAACAAAAAATGTCGGTGATTCTTTTTGATACATATTTGATAACGGTACTGACTACTGACAATGATGAGTAACACCAAGAAGGTGCAAGAGCAAACTTACAAAAATGACAAGTGTTGCATTCACATCCATTCTCAAGATAATTGAACTTCATCTCCGCTTTACCTACAAATATAATTAAATTCCCAGCTAATTACGGTGCCGCCACATAATAGGAAAGATAAAGCAGTATGGCATACTTTGTGCATTTTTTTCATGTTAGTAGATTTATTACAAATCTAGCACTTTTGTATAAGGTCCTTATAGGGAATGTTATCCTTAGTTTATCCTGGCTAGTATAGGATATAGACATATGACTTGCATATGTATGTCCTTTTATTGGCTTTCTCTCTAGTTTTGGTGAATTCTTGATTCTATTAGTGAGAACTTCATTTTGGCTAATATGATGCTTGTTTTTATGAGGTTGAGATTGATTAGGTTGGTCAATCCAATTAACATCAACTTAAAACAGTCCTGAGTAGTGTAACTTTGCTCTTCTGTTTTCCCTTTAAAATTTCCAATCCTGCAAGGTTGACTCATCTGGTTTAGGATGTGACCTTGCCAAAAGTTCTGGTGGTCTAGATTTCTTAACAGAACTCTTTTGGCTTTAAACATCTTGAAATATGGATAGATTGTGTTCCTTCCATTTTTATGTTCATATATTGCTGGATTTCTTCCATTGATGTTGTTACAACACCGTACATTTCAACTAACAGTTTTGACTTTTTGGTTTTTCCTTTATTTTACCTTTTTTGAGTGATAATCCTAAATTTGAGAAACACTTGCACGTGCAGAGTTCTTGCTGCTGCTGCTAAAAGAGCAGGAGATGAGGATGAAGGTAAGCTTGCTTGGTTTACATACTTCCACCTTATTGTCTCAACCTTTTGGTTTCTTTGCAGTCAAATTGTTTTGTTTTGCTATCTTTTCTATTTTTAGGTTCTCACTAATCATTTTATTTTGTTTCCTTTTCTATTTTTAGGTTCTGATGCTACAGCTGAGAATGGAGTGGATAATAAGGACCTCTTAATGCCAGATCTATGTGTTATATGTCTGGAGCAGGAATACAACTCAGTTTTTGTCCCGTAAGACCCTTTCATGAAGGCTTTTAGTTCACTACATGTTCAAATGTTCAGATTTTTGGGACATTGCTATGCTGCTTAATTGATAAAATTTTAGGAATTGTATGCGAATCCCAACTTGTTTGGTGTTGGCACAATAGAAGTAGAGTTCATATAAGTAATACCAACTAACTCAAGATAAAACTACTGTTTTAAGATTAATTAATTCAGATATAACTAGTTTACAACAAAGATCTTGAATGGCAAATTGTGGAAAGGAGTGTGTAAATAGAGTGGAATGGATATGGAGACTCGTGCAGCTTCTCAAACTATTTTGGATTGAGGGATATCTGAGTTCATTTGATTTGATTAATGACGGATCAGCTTCCTTTTTGTCCCTGTTTAGGTTGCTGAATGAGATTCTGAAAAAATGAGCATCTCTGAGACTTGGCATCAGATATTCCTATTTTTGTTTTTGTGTTGGGTTGATCCAAGGGTCTTTCCGAAACAGCCTCTCTATCTTCACAAGGTAGACCTGACTGGTGGTGTTAGTTGTTGTTTAACATTGTAGTATTGCCCATAAGAGCGGGCTGGCAACACTGTTACTTGGAACAGCAGATAGGATACTGAAGCTGTAGTGTCCTCACCCTCTAATATAATTAATTTGACAGCCCAGGCGCTAATGCGAAACTTTTGGACTTTTATGTTTGTTTGGTTTTTGTGTAGAAATTAAAATTTTATTTTGTTTTCGCAGGTGTGGTCATATGTGCTGTTGCATGACGTGCTCTTCACACTTGACAAACTGCCCACTATGTAGGAGACGGATCGAGCAGGTTGTGAAAACTTTTCGCCATTGAGCAGAAAGCTGCCTTGTTGAAATGGCCATTTTCTGACTCGCTCATAAAAATCATTCGGATATTAACTTGTAGATTGTATTGAAAGCTGGATTTTGTCAGAGTTTTATGTCATTATGATGTATGTATA</genome_strand>
        <mrna_strand>GTGAGTACAGTGGTCTACGAGGCGTGATTGTGGAAGAAACT........................................................................................GCCGAACAACATTTTCTGAAACACAATGATGCAGGTTCTTGGATACAGGATTCTGCCTTGATGCTCTCAATGTGTAAAGAAGTTCCGTGGTACCTG..........................................................................................................................GATGATGGCACAGGTCGCACTTTTATTGTTGGTGGCCGTGGTGCCACGGGTTTGGTACTGACAGTTGGAAGTGAAGCCTTCGAGGAAGCAGGGAGATCATTTGTGCGAGGGACATTGGATTATCTTCAAGGTCTTAAG.............................................................................................................................................................................................................................................................................ATGCTTGGAGTAAAGAGGATTGAACGTGTGCTGCCAGTTGGTACTCCTTTGACTGTTGTTGGCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTCAAAGATGACATTGGGACAGTTCGGATCCAGCGACCACACAAAGGCCCATTTTATATCTCTCATAAAACTATTGACCAGCTCATTGCAAATCTTGGGAGATGGGCAAG..........................................................................................................................................................................................................................................................................................................................................GTGGTACAAGTATGCTTCAATGGGTTTTACTGCTGTCGGTGTATATCTACTTGTGAAGCATACTTTTCATTATATGATGGAAAGAAAGCGTCACTGGGAATTGCGCAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCTTGCTGCTGCTGCTAAAAGAGCAGGAGATGAGGATGAAG.............................................................................................................................................GTTCTGATGCTACAGCTGAGAATGGAGTGGATAATAAGGACCTCTTAATGCCAGATCTATGTGTTATATGTCTGGAGCAGGAATACAACTCAGTTTTTGTCCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGTCATATGTGCTGTTGCATGACGTGCTCTTCACACTTGACAAACTGCCCACTATGTAGGAGACGGATCGAGCAGGTTGTGAAAACTTTTCGCCATTGAGCA-AAAGCTGCCTTGTTGAAATGGCCATTTTCTGACTCGCTCATAAAAATCATTCGGATATTAACTTGTAGATTGTATTGAAAGCTGGATTTTGTCAAAAGTTTATGTCATTATGATGAATGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393276" ref_strand="+" ref_description="SGN-E393276 [TUS-38-K18]">
      <seq>tttctgaaacacaatgatgcaggttcttggatacaggattctgccttgatgctctcaatgtgtaaagaagttccgtggtacctggatgatggcacaggtcgcacttttattgttggtggccgtggtgccacgggtttggtactgacagttggaagtgaagccttcgaggaagcagggagatcatttgtgcgagggacattggattatcttcaaggtcttaagatgcttggagtaaagaggattgaacgtgtgctgccagttggtactcctttgactgttgttggcgaggctgtcaaagatgacattgggacagttcggatccagcgaccacacaaaggcccattttatatctctcataaaactattgaccagctcattgcaaatcttgggagatgggcaatgtggtacaagtatgcttcaatgggttttacctgctgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="115945" stop="118608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116245" g_stop="116328" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116329" i_stop="116450" i_length="122">
            <donor d_prob="0.738" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116451" g_stop="116588" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="222" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116589" i_stop="116857" i_length="269">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116858" g_stop="116923" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="288" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116924" i_stop="117828" i_length="905">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117829" g_stop="117941" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="401" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117942" i_stop="118271" i_length="330">
            <donor d_prob="0.905" d_score="0.98"/>
            <acceptor a_prob="0.937" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118272" g_stop="118308" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="439" r_length="38" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E393276" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116245" e_stop="116328"/>
          <exon e_start="116451" e_stop="116588"/>
          <exon e_start="116858" e_stop="116923"/>
          <exon e_start="117829" e_stop="117941"/>
          <exon e_start="118272" e_stop="118308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTGAAACACAATGATGCAGGTTCTTGGATACAGGATTCTGCCTTGATGCTCTCAATGTGTAAAGAAGTTCCGTGGTACCTGGTTGGAATGACTTCCTTTTGTCTTTTTATCTTAATAGTCCTGTAGGCTGTTTAAATGAATTCTTAAGAATTCTGCTTTACTTTGATGTATGAATTTTTAATAGTTTTTGACTTGTGTACCAGGATGATGGCACAGGTCGCACTTTTATTGTTGGTGGCCGTGGTGCCACGGGTTTGGTACTGACAGTTGGAAGTGAAGCCTTCGAGGAAGCAGGGAGATCATTTGTGCGAGGGACATTGGATTATCTTCAAGGTCTTAAGGTCTGTTTTATCATATAACTGCTGTTTGTTGCAGGTTGTAATTTGTATTTTCATAACTCTTGTGTCTAAAAAAATTTTGAAGGTAACTTTGACTCTGACCTATTATTTTCACAAGTAGGAGGCCAACGCCATTTTTAATTAGCGTCGTAAGTGTAGAACATAGTGAATTGCAGGAAACCACTCTCACCAGTCACTCACATATCCGTTCATGTATGACCATGCTTTTATGTATTTTGGTGAAGTTCATTAATTGATGATTACTTTTGAAGATGCTTGGAGTAAAGAGGATTGAACGTGTGCTGCCAGTTGGTACTCCTTTGACTGTTGTTGGCGAGGTATGATATGCCTTTTGAGCAGAAAAAGTTGCAACATTTTCATAGAAGTAACACAAATTAACAGAATTCAGATGATACGAGTAGCAACTCTCTGTCAGCTTATTCTTTAGTCGTTCACTATGTATTCTCAACACTGATGTCATAAAAAATGTATTCCTGACACTAACTGTAAATAGAATTGATGACAGCTAAGAAGAATGATAGTGAAACAAAACACCTTCTATATACTTAATTAATTCTCAACACCTTCTATATACTTAATTACTTCTCAACACCTTCTATATAGTTCTTTATTTTCTGTAAGGTAACTCTTAGTGTAGTTTCCAGAGATCTTTGTTGCATCACGTTATTGTGGTTATTGGAAGGAAAGAAGAACAAGAACAATTACAAGAGGTGACTTCCAGAGAGGATTCAACAATAGAACAAACTCAAAATGATCCAAGAGTTGCATATATTTAACTAACTGGTTAAATGGTGCACGTCCTTGAATTACATAAAATACATATCAAGACCTATGGACATCCTCAATATATATAAAATGATTCAGTTGTTTTGTCACAGTCGAGTGGAAGCAAGCATGCAGAGTTTAGACTTTCTTTTAATGTGTCATTCCTTGTGTTCTTCATGGTCATCATGACCTGATTGGTAGAGAATAGTTTTAAAGGGAAATAATAAAAATAGCAAATAGATTATAGAAATAGCTATCAAGGAAATAAGAGGATCAAAATGCATCCAATATTACAAGTATACTTTAGTTATACTTGAGCATTCATTGTTCACTTCTACTACATTACTCTGCTTGAACACTAGTTGACCCTTCTCTGTGTGCGCCAAGGGGGCTGGATGCATATAAGAGCTGTCTGTATATTGTGTATCAACTTCATTTTCCTTTGTGATTGTATCAGGCTGTCAAAGATGACATTGGGACAGTTCGGATCCAGCGACCACACAAAGGCCCATTTTATATCTCTCATAAAACTATTGACCAGCTCATTGCAAATCTTGGGAGATGGGCAAGGTTGATATGCTGTACTTTCGAACTGTAATCAACCCTATATTCCCCTACTAATTTTACATATTTTTTCACATGCCCATATCCAATCTTATGTTCAAGCTCATAGACATGAGTACGTTCTACTTCAATTAGGTTGGTAGTGTACTTTGTAGGGTCTGTATCAAGTACCCTTTCCACTATCATATCTGTTCAACAAAGATATGTCTAGAAAAATAAAAGTTCATGAATTGACTTGCATGAACATATCTATTCCCCCATGAGTATGTCAAGGCGCCCCCAGGATTTGTTTGTTTTAGCCTCGTACATAGTATTGATAAGTTCTTTTACTTTCAGGTGGTACAAGTATGCTTCAATGGGTTTTA-CTGCTGTC</genome_strand>
        <mrna_strand>TTTCTGAAACACAATGATGCAGGTTCTTGGATACAGGATTCTGCCTTGATGCTCTCAATGTGTAAAGAAGTTCCGTGGTACCTG..........................................................................................................................GATGATGGCACAGGTCGCACTTTTATTGTTGGTGGCCGTGGTGCCACGGGTTTGGTACTGACAGTTGGAAGTGAAGCCTTCGAGGAAGCAGGGAGATCATTTGTGCGAGGGACATTGGATTATCTTCAAGGTCTTAAG.............................................................................................................................................................................................................................................................................ATGCTTGGAGTAAAGAGGATTGAACGTGTGCTGCCAGTTGGTACTCCTTTGACTGTTGTTGGCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTCAAAGATGACATTGGGACAGTTCGGATCCAGCGACCACACAAAGGCCCATTTTATATCTCTCATAAAACTATTGACCAGCTCATTGCAAATCTTGGGAGATGGGCAAT..........................................................................................................................................................................................................................................................................................................................................GTGGTACAAGTATGCTTCAATGGGTTTTACCTGCTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709124" ref_strand="+" ref_description="SGN-E709124 [FA42DA09]">
      <seq>catcctcaatatatataaaatgattcagttgttttgtcacagtcgagtggaagcaagcatgcagagtttagactttcttttaatgtgtcattccttgtgttcttcatggtcatcatgacctgattggtagagaatagttttaaagggaaataataaaaatagcaaatagattatagaaatagctatcaaggaaataagaggatcaaaatgcatccaatattacaagtatactttagttatacttgagcattcattgttcacttctactacattactctgcttgaacactagttgacccttctctgtgtgcgccaagggggctggatgcatataagagctgtctgtatattgtgtatcaacttcattttcctttgtgattgtatcaggctgtcaaagatgacattgggacagttcggatccagcgaccacacaaaggcccattttatatctctcataaaactattgaccagctcattgcaaatcttgggagatgggcaaggtggtacaagtatgcttcaatgggttttactgctgtcggtgtatatctacttgtgaagcatacttttcattatatgatggaaagaaagcgtcactgggaattgcgcaggagagttcttgctgctgctgctaaaagagcaggagatgaggatgaaggttctgatgctacagctgagaatggagtggataataaggacctcttaatgccagatctatgtgttatatgtctggagcaggaatacaactcagtttttgtcccgtgtggtcatatgtgctgttgcatgacgtgctctttccacttgacaaactgcccactatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117143" stop="122329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117443" g_stop="117941" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117942" i_stop="118271" i_length="330">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118272" g_stop="118382" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="610" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118383" i_stop="120950" i_length="2568">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120951" g_stop="120994" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="654" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120995" i_stop="121135" i_length="141">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121136" g_stop="121238" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="757" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121239" i_stop="121968" i_length="730">
            <donor d_prob="0.562" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121969" g_stop="122029" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="758" r_stop="818" r_length="61" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E709124" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117443" e_stop="117941"/>
          <exon e_start="118272" e_stop="118382"/>
          <exon e_start="120951" e_stop="120994"/>
          <exon e_start="121136" e_stop="121238"/>
          <exon e_start="121969" e_stop="122029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCTCAATATATATAAAATGATTCAGTTGTTTTGTCACAGTCGAGTGGAAGCAAGCATGCAGAGTTTAGACTTTCTTTTAATGTGTCATTCCTTGTGTTCTTCATGGTCATCATGACCTGATTGGTAGAGAATAGTTTTAAAGGGAAATAATAAAAATAGCAAATAGATTATAGAAATAGCTATCAAGGAAATAAGAGGATCAAAATGCATCCAATATTACAAGTATACTTTAGTTATACTTGAGCATTCATTGTTCACTTCTACTACATTACTCTGCTTGAACACTAGTTGACCCTTCTCTGTGTGCGCCAAGGGGGCTGGATGCATATAAGAGCTGTCTGTATATTGTGTATCAACTTCATTTTCCTTTGTGATTGTATCAGGCTGTCAAAGATGACATTGGGACAGTTCGGATCCAGCGACCACACAAAGGCCCATTTTATATCTCTCATAAAACTATTGACCAGCTCATTGCAAATCTTGGGAGATGGGCAAGGTTGATATGCTGTACTTTCGAACTGTAATCAACCCTATATTCCCCTACTAATTTTACATATTTTTTCACATGCCCATATCCAATCTTATGTTCAAGCTCATAGACATGAGTACGTTCTACTTCAATTAGGTTGGTAGTGTACTTTGTAGGGTCTGTATCAAGTACCCTTTCCACTATCATATCTGTTCAACAAAGATATGTCTAGAAAAATAAAAGTTCATGAATTGACTTGCATGAACATATCTATTCCCCCATGAGTATGTCAAGGCGCCCCCAGGATTTGTTTGTTTTAGCCTCGTACATAGTATTGATAAGTTCTTTTACTTTCAGGTGGTACAAGTATGCTTCAATGGGTTTTACTGCTGTCGGTGTATATCTACTTGTGAAGCATACTTTTCATTATATGATGGAAAGAAAGCGTCACTGGGAATTGCGCAGGAGGTATATTTAGGCCAAGACTTCTAAAACTGCAGTCTTTTATCTTTTTTTTTTCTTTTGCCCCTTACTAATCCTCCCTTCTGAGTTTTGTATCTATCAAAGCACTACTTAAATGTTTGGGTACATTAGAGATGCTTGTACAATTTACTATAGGGTAGGTGCTGCAACTTGTACCTCAGTATACTTTCTGTTCATGATTGATTTCAAGGATAAGCTGAGATGCAACAGTTTAAGATGTCTCTTCTTTGCCTGTGTCCCTTGCTCAATTGGGGCATAACATGAGCTGCTGGGAAAAGATGCTTTGGGAGATGTCAAGGTGCCTGCAAGCTGGACTAAGCGCCACAATTTTTAAAAAAGATATGCTTCAGAGATGGTAAAGCCAGATTTGTAGTAATTTAGAGATGAGGATTTGATGCAGTACTAGAAAGAGGACAGAGGGACGAGATAGAGGGTATAAATTAGCAAGGGGAGAAAGAGGGAAAGTTAACAGGAGAGCGAGAGAAAGGACAGAATCTATTACAGGGAGTTATTTACGAAGTGTTTGTTCATAAACTGCATTAGAGTTTAGTGACAACAAATTAGAAAGTACCTAAAATGACAAAATACTAGGAGCTTTCAATGCATATAAACAATGGGTGCATATTCCATTTTCATGCACAAAATGTACTTCGTGTGTTAGAAAGGAGGCATAATTTGAAGATGCCATTGGTAGGGACAGGAAAAATCTTTAGGGGTCGTTTGGTTGGGAATTAGTTATCCCAGGATTAACTATCCCGGGATTAGCTATCCTGGGATAACTTATCTCACCATGTATATTGATTAACTTTTCCCATCACTATGATATAAATGGTGGGATGAGTTATTCCCAAACAACATAATTTTTTTCATTTCGTCACTATTTCCTTATCCCATCACTATTATTTTTAATTCCTCACACCAAACGAGTCCTTAGACTTTACCTATTATCAGGTTCTTACGCATAATGCACCCCTCTCAAATAAGAAAGCACCATATTCTGGATACTACTAAAAGTTGAGGAAGACATGTTATACTGAATTGTAATAGAAAATGAGGAAGATCTTTATATCATGCTCTTTTCCACATGGGAGAGATGGACTTTTTTTCTGAGGGCAGCAACGATGATGAGGTTTGTGCCCAAGAATAGGCTATACATGTGTATCTTGATTGGATGTTTTCAGTCCGTTGACTCGCCCTTCCTGAGAATGAATGGAGTAAATTACTATGAACACATATTTTGATGAATGCCACTAACACCAAATTGCAGGACCCAATTCTTAGATAAGCAAAGTGTAGCAGGCTAAGGTGAGCGTTAGCCCCTTAAAATATTTGTGACCTAGTATTTTTCAGCTTAAGGTAATTTTCTTGGTATTTACCTCCTTCCTACTTTGTGAAGAGCTTGATATTTAGCCTGTATGGCACTTATGTGAGTATTTTGGTGGAACAGAATTGGAGAGTTTTTGAAGGGTGGAATATGACTTTGCATTGCTTAGGCTTGCCTTTTATTATTGATTAACTTTTGGCACACCCACGAGGTCCCTGTTAGTATAGATGAATTATTATCTTATCATAGAGAAGTGTTATTTTATGGGAGTTGTCTACTTTTTGGTACACATATTGTCTAACATGTTTTCTCCTCATAACATCAGTAAGCTGTTAATTTTTTATTTTTTTTCGAAAGCTTTGTGTCGGAGGTTCATCAGTTATGGAGCTTGTTAAACCAAACAAAAAATGTCGGTGATTCTTTTTGATACATATTTGATAACGGTACTGACTACTGACAATGATGAGTAACACCAAGAAGGTGCAAGAGCAAACTTACAAAAATGACAAGTGTTGCATTCACATCCATTCTCAAGATAATTGAACTTCATCTCCGCTTTACCTACAAATATAATTAAATTCCCAGCTAATTACGGTGCCGCCACATAATAGGAAAGATAAAGCAGTATGGCATACTTTGTGCATTTTTTTCATGTTAGTAGATTTATTACAAATCTAGCACTTTTGTATAAGGTCCTTATAGGGAATGTTATCCTTAGTTTATCCTGGCTAGTATAGGATATAGACATATGACTTGCATATGTATGTCCTTTTATTGGCTTTCTCTCTAGTTTTGGTGAATTCTTGATTCTATTAGTGAGAACTTCATTTTGGCTAATATGATGCTTGTTTTTATGAGGTTGAGATTGATTAGGTTGGTCAATCCAATTAACATCAACTTAAAACAGTCCTGAGTAGTGTAACTTTGCTCTTCTGTTTTCCCTTTAAAATTTCCAATCCTGCAAGGTTGACTCATCTGGTTTAGGATGTGACCTTGCCAAAAGTTCTGGTGGTCTAGATTTCTTAACAGAACTCTTTTGGCTTTAAACATCTTGAAATATGGATAGATTGTGTTCCTTCCATTTTTATGTTCATATATTGCTGGATTTCTTCCATTGATGTTGTTACAACACCGTACATTTCAACTAACAGTTTTGACTTTTTGGTTTTTCCTTTATTTTACCTTTTTTGAGTGATAATCCTAAATTTGAGAAACACTTGCACGTGCAGAGTTCTTGCTGCTGCTGCTAAAAGAGCAGGAGATGAGGATGAAGGTAAGCTTGCTTGGTTTACATACTTCCACCTTATTGTCTCAACCTTTTGGTTTCTTTGCAGTCAAATTGTTTTGTTTTGCTATCTTTTCTATTTTTAGGTTCTCACTAATCATTTTATTTTGTTTCCTTTTCTATTTTTAGGTTCTGATGCTACAGCTGAGAATGGAGTGGATAATAAGGACCTCTTAATGCCAGATCTATGTGTTATATGTCTGGAGCAGGAATACAACTCAGTTTTTGTCCCGTAAGACCCTTTCATGAAGGCTTTTAGTTCACTACATGTTCAAATGTTCAGATTTTTGGGACATTGCTATGCTGCTTAATTGATAAAATTTTAGGAATTGTATGCGAATCCCAACTTGTTTGGTGTTGGCACAATAGAAGTAGAGTTCATATAAGTAATACCAACTAACTCAAGATAAAACTACTGTTTTAAGATTAATTAATTCAGATATAACTAGTTTACAACAAAGATCTTGAATGGCAAATTGTGGAAAGGAGTGTGTAAATAGAGTGGAATGGATATGGAGACTCGTGCAGCTTCTCAAACTATTTTGGATTGAGGGATATCTGAGTTCATTTGATTTGATTAATGACGGATCAGCTTCCTTTTTGTCCCTGTTTAGGTTGCTGAATGAGATTCTGAAAAAATGAGCATCTCTGAGACTTGGCATCAGATATTCCTATTTTTGTTTTTGTGTTGGGTTGATCCAAGGGTCTTTCCGAAACAGCCTCTCTATCTTCACAAGGTAGACCTGACTGGTGGTGTTAGTTGTTGTTTAACATTGTAGTATTGCCCATAAGAGCGGGCTGGCAACACTGTTACTTGGAACAGCAGATAGGATACTGAAGCTGTAGTGTCCTCACCCTCTAATATAATTAATTTGACAGCCCAGGCGCTAATGCGAAACTTTTGGACTTTTATGTTTGTTTGGTTTTTGTGTAGAAATTAAAATTTTATTTTGTTTTCGCAGGTGTGGTCATATGTGCTGTTGCATGACGTGCTCTTCACACTTGACAAACTGCCCACTATGT</genome_strand>
        <mrna_strand>CATCCTCAATATATATAAAATGATTCAGTTGTTTTGTCACAGTCGAGTGGAAGCAAGCATGCAGAGTTTAGACTTTCTTTTAATGTGTCATTCCTTGTGTTCTTCATGGTCATCATGACCTGATTGGTAGAGAATAGTTTTAAAGGGAAATAATAAAAATAGCAAATAGATTATAGAAATAGCTATCAAGGAAATAAGAGGATCAAAATGCATCCAATATTACAAGTATACTTTAGTTATACTTGAGCATTCATTGTTCACTTCTACTACATTACTCTGCTTGAACACTAGTTGACCCTTCTCTGTGTGCGCCAAGGGGGCTGGATGCATATAAGAGCTGTCTGTATATTGTGTATCAACTTCATTTTCCTTTGTGATTGTATCAGGCTGTCAAAGATGACATTGGGACAGTTCGGATCCAGCGACCACACAAAGGCCCATTTTATATCTCTCATAAAACTATTGACCAGCTCATTGCAAATCTTGGGAGATGGGCAAG..........................................................................................................................................................................................................................................................................................................................................GTGGTACAAGTATGCTTCAATGGGTTTTACTGCTGTCGGTGTATATCTACTTGTGAAGCATACTTTTCATTATATGATGGAAAGAAAGCGTCACTGGGAATTGCGCAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCTTGCTGCTGCTGCTAAAAGAGCAGGAGATGAGGATGAAG.............................................................................................................................................GTTCTGATGCTACAGCTGAGAATGGAGTGGATAATAAGGACCTCTTAATGCCAGATCTATGTGTTATATGTCTGGAGCAGGAATACAACTCAGTTTTTGTCCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGTCATATGTGCTGTTGCATGACGTGCTCTTTCCACTTGACAAACTGCCCACTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274538" ref_strand="-" ref_description="SGN-E274538 [cLEN-11-D10]">
      <seq>aaaggcccattttatatctctcataaaactattgaccagctcattgcaaatcttgggagatgggcaaggtggtacaagtatgcttcaatgggttttactgctgtcggtgtatatctacttgtgaagcatacttttcattatatgatggaaagaaagcgtcactgggaattgcgcaggagagttcttgctgctgctgctaaaagagcaggagatgaggatgaaggttctgatgctacagctgagaatggagtggataataaggacctcttaatgccagatctatgtgttatatgtctggagcaggaatacaactcagtttttgtcccgtgtggtcatatgtgctgttgcatgacgtgctcttcacacttgacaaactgcccactatgtaggagacggatcgagcaggttgtgaaaacttttcgccattgagcagaaagctgccttgttgaaatggccattttctgactcgctcataaaaatcattcggatattaacttgtagattgtattgaaagctggattttgtcagagttttatgtcattatgatgtatgtataatagcctctctccatctcaaaaaaaaaaaaaaaaaaactgagactagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117574" stop="122518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117874" g_stop="117941" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117942" i_stop="118271" i_length="330">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118272" g_stop="118382" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="179" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118383" i_stop="120950" i_length="2568">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120951" g_stop="120994" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="223" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120995" i_stop="121135" i_length="141">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121136" g_stop="121238" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="326" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121239" i_stop="121968" i_length="730">
            <donor d_prob="0.562" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121969" g_stop="122220" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="578" r_length="252" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="579" polyA_stop="594"/>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E274538" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274538" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="117874" e_stop="117941"/>
          <exon e_start="118272" e_stop="118382"/>
          <exon e_start="120951" e_stop="120994"/>
          <exon e_start="121136" e_stop="121238"/>
          <exon e_start="121969" e_stop="122220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGCCCATTTTATATCTCTCATAAAACTATTGACCAGCTCATTGCAAATCTTGGGAGATGGGCAAGGTTGATATGCTGTACTTTCGAACTGTAATCAACCCTATATTCCCCTACTAATTTTACATATTTTTTCACATGCCCATATCCAATCTTATGTTCAAGCTCATAGACATGAGTACGTTCTACTTCAATTAGGTTGGTAGTGTACTTTGTAGGGTCTGTATCAAGTACCCTTTCCACTATCATATCTGTTCAACAAAGATATGTCTAGAAAAATAAAAGTTCATGAATTGACTTGCATGAACATATCTATTCCCCCATGAGTATGTCAAGGCGCCCCCAGGATTTGTTTGTTTTAGCCTCGTACATAGTATTGATAAGTTCTTTTACTTTCAGGTGGTACAAGTATGCTTCAATGGGTTTTACTGCTGTCGGTGTATATCTACTTGTGAAGCATACTTTTCATTATATGATGGAAAGAAAGCGTCACTGGGAATTGCGCAGGAGGTATATTTAGGCCAAGACTTCTAAAACTGCAGTCTTTTATCTTTTTTTTTTCTTTTGCCCCTTACTAATCCTCCCTTCTGAGTTTTGTATCTATCAAAGCACTACTTAAATGTTTGGGTACATTAGAGATGCTTGTACAATTTACTATAGGGTAGGTGCTGCAACTTGTACCTCAGTATACTTTCTGTTCATGATTGATTTCAAGGATAAGCTGAGATGCAACAGTTTAAGATGTCTCTTCTTTGCCTGTGTCCCTTGCTCAATTGGGGCATAACATGAGCTGCTGGGAAAAGATGCTTTGGGAGATGTCAAGGTGCCTGCAAGCTGGACTAAGCGCCACAATTTTTAAAAAAGATATGCTTCAGAGATGGTAAAGCCAGATTTGTAGTAATTTAGAGATGAGGATTTGATGCAGTACTAGAAAGAGGACAGAGGGACGAGATAGAGGGTATAAATTAGCAAGGGGAGAAAGAGGGAAAGTTAACAGGAGAGCGAGAGAAAGGACAGAATCTATTACAGGGAGTTATTTACGAAGTGTTTGTTCATAAACTGCATTAGAGTTTAGTGACAACAAATTAGAAAGTACCTAAAATGACAAAATACTAGGAGCTTTCAATGCATATAAACAATGGGTGCATATTCCATTTTCATGCACAAAATGTACTTCGTGTGTTAGAAAGGAGGCATAATTTGAAGATGCCATTGGTAGGGACAGGAAAAATCTTTAGGGGTCGTTTGGTTGGGAATTAGTTATCCCAGGATTAACTATCCCGGGATTAGCTATCCTGGGATAACTTATCTCACCATGTATATTGATTAACTTTTCCCATCACTATGATATAAATGGTGGGATGAGTTATTCCCAAACAACATAATTTTTTTCATTTCGTCACTATTTCCTTATCCCATCACTATTATTTTTAATTCCTCACACCAAACGAGTCCTTAGACTTTACCTATTATCAGGTTCTTACGCATAATGCACCCCTCTCAAATAAGAAAGCACCATATTCTGGATACTACTAAAAGTTGAGGAAGACATGTTATACTGAATTGTAATAGAAAATGAGGAAGATCTTTATATCATGCTCTTTTCCACATGGGAGAGATGGACTTTTTTTCTGAGGGCAGCAACGATGATGAGGTTTGTGCCCAAGAATAGGCTATACATGTGTATCTTGATTGGATGTTTTCAGTCCGTTGACTCGCCCTTCCTGAGAATGAATGGAGTAAATTACTATGAACACATATTTTGATGAATGCCACTAACACCAAATTGCAGGACCCAATTCTTAGATAAGCAAAGTGTAGCAGGCTAAGGTGAGCGTTAGCCCCTTAAAATATTTGTGACCTAGTATTTTTCAGCTTAAGGTAATTTTCTTGGTATTTACCTCCTTCCTACTTTGTGAAGAGCTTGATATTTAGCCTGTATGGCACTTATGTGAGTATTTTGGTGGAACAGAATTGGAGAGTTTTTGAAGGGTGGAATATGACTTTGCATTGCTTAGGCTTGCCTTTTATTATTGATTAACTTTTGGCACACCCACGAGGTCCCTGTTAGTATAGATGAATTATTATCTTATCATAGAGAAGTGTTATTTTATGGGAGTTGTCTACTTTTTGGTACACATATTGTCTAACATGTTTTCTCCTCATAACATCAGTAAGCTGTTAATTTTTTATTTTTTTTCGAAAGCTTTGTGTCGGAGGTTCATCAGTTATGGAGCTTGTTAAACCAAACAAAAAATGTCGGTGATTCTTTTTGATACATATTTGATAACGGTACTGACTACTGACAATGATGAGTAACACCAAGAAGGTGCAAGAGCAAACTTACAAAAATGACAAGTGTTGCATTCACATCCATTCTCAAGATAATTGAACTTCATCTCCGCTTTACCTACAAATATAATTAAATTCCCAGCTAATTACGGTGCCGCCACATAATAGGAAAGATAAAGCAGTATGGCATACTTTGTGCATTTTTTTCATGTTAGTAGATTTATTACAAATCTAGCACTTTTGTATAAGGTCCTTATAGGGAATGTTATCCTTAGTTTATCCTGGCTAGTATAGGATATAGACATATGACTTGCATATGTATGTCCTTTTATTGGCTTTCTCTCTAGTTTTGGTGAATTCTTGATTCTATTAGTGAGAACTTCATTTTGGCTAATATGATGCTTGTTTTTATGAGGTTGAGATTGATTAGGTTGGTCAATCCAATTAACATCAACTTAAAACAGTCCTGAGTAGTGTAACTTTGCTCTTCTGTTTTCCCTTTAAAATTTCCAATCCTGCAAGGTTGACTCATCTGGTTTAGGATGTGACCTTGCCAAAAGTTCTGGTGGTCTAGATTTCTTAACAGAACTCTTTTGGCTTTAAACATCTTGAAATATGGATAGATTGTGTTCCTTCCATTTTTATGTTCATATATTGCTGGATTTCTTCCATTGATGTTGTTACAACACCGTACATTTCAACTAACAGTTTTGACTTTTTGGTTTTTCCTTTATTTTACCTTTTTTGAGTGATAATCCTAAATTTGAGAAACACTTGCACGTGCAGAGTTCTTGCTGCTGCTGCTAAAAGAGCAGGAGATGAGGATGAAGGTAAGCTTGCTTGGTTTACATACTTCCACCTTATTGTCTCAACCTTTTGGTTTCTTTGCAGTCAAATTGTTTTGTTTTGCTATCTTTTCTATTTTTAGGTTCTCACTAATCATTTTATTTTGTTTCCTTTTCTATTTTTAGGTTCTGATGCTACAGCTGAGAATGGAGTGGATAATAAGGACCTCTTAATGCCAGATCTATGTGTTATATGTCTGGAGCAGGAATACAACTCAGTTTTTGTCCCGTAAGACCCTTTCATGAAGGCTTTTAGTTCACTACATGTTCAAATGTTCAGATTTTTGGGACATTGCTATGCTGCTTAATTGATAAAATTTTAGGAATTGTATGCGAATCCCAACTTGTTTGGTGTTGGCACAATAGAAGTAGAGTTCATATAAGTAATACCAACTAACTCAAGATAAAACTACTGTTTTAAGATTAATTAATTCAGATATAACTAGTTTACAACAAAGATCTTGAATGGCAAATTGTGGAAAGGAGTGTGTAAATAGAGTGGAATGGATATGGAGACTCGTGCAGCTTCTCAAACTATTTTGGATTGAGGGATATCTGAGTTCATTTGATTTGATTAATGACGGATCAGCTTCCTTTTTGTCCCTGTTTAGGTTGCTGAATGAGATTCTGAAAAAATGAGCATCTCTGAGACTTGGCATCAGATATTCCTATTTTTGTTTTTGTGTTGGGTTGATCCAAGGGTCTTTCCGAAACAGCCTCTCTATCTTCACAAGGTAGACCTGACTGGTGGTGTTAGTTGTTGTTTAACATTGTAGTATTGCCCATAAGAGCGGGCTGGCAACACTGTTACTTGGAACAGCAGATAGGATACTGAAGCTGTAGTGTCCTCACCCTCTAATATAATTAATTTGACAGCCCAGGCGCTAATGCGAAACTTTTGGACTTTTATGTTTGTTTGGTTTTTGTGTAGAAATTAAAATTTTATTTTGTTTTCGCAGGTGTGGTCATATGTGCTGTTGCATGACGTGCTCTTCACACTTGACAAACTGCCCACTATGTAGGAGACGGATCGAGCAGGTTGTGAAAACTTTTCGCCATTGAGCAGAAAGCTGCCTTGTTGAAATGGCCATTTTCTGACTCGCTCATAAAAATCATTCGGATATTAACTTGTAGATTGTATTGAAAGCTGGATTTTGTCAGAGTTTTATGTCATTATGATGTATGTATAATAGCCTCTCTCCATCTCAACG</genome_strand>
        <mrna_strand>AAAGGCCCATTTTATATCTCTCATAAAACTATTGACCAGCTCATTGCAAATCTTGGGAGATGGGCAAG..........................................................................................................................................................................................................................................................................................................................................GTGGTACAAGTATGCTTCAATGGGTTTTACTGCTGTCGGTGTATATCTACTTGTGAAGCATACTTTTCATTATATGATGGAAAGAAAGCGTCACTGGGAATTGCGCAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCTTGCTGCTGCTGCTAAAAGAGCAGGAGATGAGGATGAAG.............................................................................................................................................GTTCTGATGCTACAGCTGAGAATGGAGTGGATAATAAGGACCTCTTAATGCCAGATCTATGTGTTATATGTCTGGAGCAGGAATACAACTCAGTTTTTGTCCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGTCATATGTGCTGTTGCATGACGTGCTCTTCACACTTGACAAACTGCCCACTATGTAGGAGACGGATCGAGCAGGTTGTGAAAACTTTTCGCCATTGAGCAGAAAGCTGCCTTGTTGAAATGGCCATTTTCTGACTCGCTCATAAAAATCATTCGGATATTAACTTGTAGATTGTATTGAAAGCTGGATTTTGTCAGAGTTTTATGTCATTATGATGTATGTATAATAGCCTCTCTCCATCTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540113" ref_strand="+" ref_description="SGN-E540113 [TUS-60-D13]">
      <seq>gttgagaagaagaaaaaaaaaatggcaaagaacaccaaatcagaaacccagtcccgtggaacatttcgacagtttttcagggcctttaaacgccgagtctctccggcccgcccacagaccccgatttcaaacaaaatacctatatattataatcacagcaacaatgaaaccatgaagcccggcccgacgaacattaataaggcaagcgatgactctaagtttactaattttatagatgagacgaagaaaaagatcaaggctaattcaagttttgttggtgatgaaaatggcccagtaactaaacgggccaccacaagaagggacagtttcaatgatagaatttctcactttatcaatcgggccaaactcaaaatgcgaactactactactgttgatcatgctcatgctgatggttaagaaaaaaaacaatatatatatatatattaattggtgagtgcgctctgaattaaatattggttggataagaattaagatacgaaaggagatgaacttttacggttgcgtctatttttatttgtttgatgagtaattgtatgctttattttattctgctgaaataaaaattatgacactagatactcttcaacttaatggataatgatcctttttgtgctggttaccactacgtgaaaattgtgcttttgatttttatgtgaaagtgaatatcaatgaattccattatcgtaaaaaaaaaaaaaaaaactcgagtctaaacttactctctctaaaacccctctttctctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123420" stop="124727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123720" g_stop="124426" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E540113" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123720" e_stop="124426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAGAAGAAGAAAAAAAAAATGGCAAAGAACACCAAATCAGAAACCCAGTCCCGTGGAACATTTCGACAGTTTTTCAGGGCCTTTAAACGCCGAGTCTCTCCGGCCCGCCCACAGACCCCGATTTCAAACAAAATACCTATATATTATAATCACAGCAACAATGAAACCATGAAGCCCGGCCCGACGAACATTAATAAGGCAAGCGATGACTCTAAGTTTACTAATTTTATAGATGAGACGAAGAAAAAGATCAAGGCTAATTCAAGTTTTGTTGGTGATGAAAATGGCCCAGTAACTAAACGGGCCACCACAAGAAGGGACAGTTTCAATGATAGAATTTCTCACTTTATCAATCGGGCCAAACTCAAAATGCGAACTACTACTACTGTTGATCATGCTCATGCTGATGGTTAAGAAAAAAAACAATATATATATATATATTAATTGGTGAGTGCGCTCTGAATTAAATATTGGTTGGATAAGAATTAAGATACGAAAGGAGATGAACTTTTACGGTTGCGTCTATTTTTATTTGTTTGATGAGTAATTGTATGCTTTATTTTATTCTGCTGAAATAAAAATTATGACACTAGATACTCTTCAACTTAATGGATAATGATCCTTTTTGTGCTGGTTACCACTACGTGAAAATTGTGCTTTTGATTTTTATGTGAAAGTGAATATCAATGAATTCCATTATCGTA</genome_strand>
        <mrna_strand>GTTGAGAAGAAGAAAAAAAAAATGGCAAAGAACACCAAATCAGAAACCCAGTCCCGTGGAACATTTCGACAGTTTTTCAGGGCCTTTAAACGCCGAGTCTCTCCGGCCCGCCCACAGACCCCGATTTCAAACAAAATACCTATATATTATAATCACAGCAACAATGAAACCATGAAGCCCGGCCCGACGAACATTAATAAGGCAAGCGATGACTCTAAGTTTACTAATTTTATAGATGAGACGAAGAAAAAGATCAAGGCTAATTCAAGTTTTGTTGGTGATGAAAATGGCCCAGTAACTAAACGGGCCACCACAAGAAGGGACAGTTTCAATGATAGAATTTCTCACTTTATCAATCGGGCCAAACTCAAAATGCGAACTACTACTACTGTTGATCATGCTCATGCTGATGGTTAAGAAAAAAAACAATATATATATATATATTAATTGGTGAGTGCGCTCTGAATTAAATATTGGTTGGATAAGAATTAAGATACGAAAGGAGATGAACTTTTACGGTTGCGTCTATTTTTATTTGTTTGATGAGTAATTGTATGCTTTATTTTATTCTGCTGAAATAAAAATTATGACACTAGATACTCTTCAACTTAATGGATAATGATCCTTTTTGTGCTGGTTACCACTACGTGAAAATTGTGCTTTTGATTTTTATGTGAAAGTGAATATCAATGAATTCCATTATCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286360" ref_strand="+" ref_description="SGN-E286360 [cLES-11-D9]">
      <seq>ttgagaagaagaaaaaaaaaatggcaaagaacaccaaatcagaaacccagtcccgtggaacatttcgacagtttttcagggcctttaaacgccgagtctctccggcccgcccacagaccccgatttcaaacaaaatacctatatattataatcacagcaacaatgaaaccatgaagcccggcccgacgaacattaataaggcaagcgatgactctaagtttactaattttatagatgagacgaagaaaaagatcaaggctaattcaagttttgttggtgatgaaaatggcccagtaactaaacgggccaccacaagaaggggacagtttcaatgatagaatttctcactttatcaatcgggccaaactcaaaatgcgaactactactactgttgatcatgctcatgctgatggttaagaaaaaaaacaatatatatatatatattaattggtgagtgcgctctgaattaaatattggttggataagaattaagatacgaaaggagatgaacttttacggttgcgtctatttttatttggttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123421" stop="124565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123721" g_stop="124265" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E286360" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123721" e_stop="124265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGAAGAAGAAAAAAAAAATGGCAAAGAACACCAAATCAGAAACCCAGTCCCGTGGAACATTTCGACAGTTTTTCAGGGCCTTTAAACGCCGAGTCTCTCCGGCCCGCCCACAGACCCCGATTTCAAACAAAATACCTATATATTATAATCACAGCAACAATGAAACCATGAAGCCCGGCCCGACGAACATTAATAAGGCAAGCGATGACTCTAAGTTTACTAATTTTATAGATGAGACGAAGAAAAAGATCAAGGCTAATTCAAGTTTTGTTGGTGATGAAAATGGCCCAGTAACTAAACGGGCCACCACAAGAA-GGGACAGTTTCAATGATAGAATTTCTCACTTTATCAATCGGGCCAAACTCAAAATGCGAACTACTACTACTGTTGATCATGCTCATGCTGATGGTTAAGAAAAAAAACAATATATATATATATATTAATTGGTGAGTGCGCTCTGAATTAAATATTGGTTGGATAAGAATTAAGATACGAAAGGAGATGAACTTTTACGGTTGCGTCTATTTTTATTTGTTTGATGA</genome_strand>
        <mrna_strand>TTGAGAAGAAGAAAAAAAAAATGGCAAAGAACACCAAATCAGAAACCCAGTCCCGTGGAACATTTCGACAGTTTTTCAGGGCCTTTAAACGCCGAGTCTCTCCGGCCCGCCCACAGACCCCGATTTCAAACAAAATACCTATATATTATAATCACAGCAACAATGAAACCATGAAGCCCGGCCCGACGAACATTAATAAGGCAAGCGATGACTCTAAGTTTACTAATTTTATAGATGAGACGAAGAAAAAGATCAAGGCTAATTCAAGTTTTGTTGGTGATGAAAATGGCCCAGTAACTAAACGGGCCACCACAAGAAGGGGACAGTTTCAATGATAGAATTTCTCACTTTATCAATCGGGCCAAACTCAAAATGCGAACTACTACTACTGTTGATCATGCTCATGCTGATGGTTAAGAAAAAAAACAATATATATATATATATTAATTGGTGAGTGCGCTCTGAATTAAATATTGGTTGGATAAGAATTAAGATACGAAAGGAGATGAACTTTTACGGTTGCGTCTATTTTTATTTGGTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392994" ref_strand="+" ref_description="SGN-E392994 [TUS-37-I11]">
      <seq>agaagaagaaaaaaaaaatggcaaagaacaccaaatcagaaacccagtcccgtggaacatttcgacagtttttcagggcctttaaacgccgagtctctccggcccgcccacagaccccgatttcaaacaaaatacctatatattataatcacagcaacaatgaaaccatgaagcccggcccgacgaacattaataaggcaagcgatgactctaagtttactaattttatagatgagacgaagaaaaagatcaaggctaattcaagttttgttggtgatgaaaatggcccagtaactaaacgggccaccacaagaagggacagtttcaatgatagaatttctcactttatcaatcgggccaaactcaaaatgcgaactactactactgttgatcatgctcatgctgatggttaagaaaaaaaacaatatatatatatatattaattggtgagtgcgctctgaattaaatattggttggataagaattaagatacgaaaagagatgaacttttacggttgcgtctatttttattttgtttgatgagtaattgtatgctttattttattctgctgaaataaaaattatgaccctaaatactcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123424" stop="124621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123724" g_stop="124322" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E392994" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123724" e_stop="124322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAGAAAAAAAAAATGGCAAAGAACACCAAATCAGAAACCCAGTCCCGTGGAACATTTCGACAGTTTTTCAGGGCCTTTAAACGCCGAGTCTCTCCGGCCCGCCCACAGACCCCGATTTCAAACAAAATACCTATATATTATAATCACAGCAACAATGAAACCATGAAGCCCGGCCCGACGAACATTAATAAGGCAAGCGATGACTCTAAGTTTACTAATTTTATAGATGAGACGAAGAAAAAGATCAAGGCTAATTCAAGTTTTGTTGGTGATGAAAATGGCCCAGTAACTAAACGGGCCACCACAAGAAGGGACAGTTTCAATGATAGAATTTCTCACTTTATCAATCGGGCCAAACTCAAAATGCGAACTACTACTACTGTTGATCATGCTCATGCTGATGGTTAAGAAAAAAAACAATATATATATATATATTAATTGGTGAGTGCGCTCTGAATTAAATATTGGTTGGATAAGAATTAAGATACGAAAGGAGATGAACTTTTACGGTTGCGTCTATTTTTA-TTTGTTTGATGAGTAATTGTATGCTTTATTTTATTCTGCTGAAATAAAAATTATGACACTAGATACTCT</genome_strand>
        <mrna_strand>AGAAGAAGAAAAAAAAAATGGCAAAGAACACCAAATCAGAAACCCAGTCCCGTGGAACATTTCGACAGTTTTTCAGGGCCTTTAAACGCCGAGTCTCTCCGGCCCGCCCACAGACCCCGATTTCAAACAAAATACCTATATATTATAATCACAGCAACAATGAAACCATGAAGCCCGGCCCGACGAACATTAATAAGGCAAGCGATGACTCTAAGTTTACTAATTTTATAGATGAGACGAAGAAAAAGATCAAGGCTAATTCAAGTTTTGTTGGTGATGAAAATGGCCCAGTAACTAAACGGGCCACCACAAGAAGGGACAGTTTCAATGATAGAATTTCTCACTTTATCAATCGGGCCAAACTCAAAATGCGAACTACTACTACTGTTGATCATGCTCATGCTGATGGTTAAGAAAAAAAACAATATATATATATATATTAATTGGTGAGTGCGCTCTGAATTAAATATTGGTTGGATAAGAATTAAGATACGAAAAGAGATGAACTTTTACGGTTGCGTCTATTTTTATTTTGTTTGATGAGTAATTGTATGCTTTATTTTATTCTGCTGAAATAAAAATTATGACCCTAAATACTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392993" ref_strand="+" ref_description="SGN-E392993 [TUS-37-I11](-)">
      <seq>tttggcccgttttttccgggcctttaaacgcggagtttttccggcccgcccacagaccccgatttcaaacaaaatacctttttttttttaatccccgcaacaatgaaacccggaagcccggcccgacgaaccttaataaggcaagggatgactttaagtttactaattttatagatgggacgaagaaaaagatcaaggctaattcaagttttgttggggatgaaaatggccccgtaactaaacgggcccccccaagaagggacagtttcaatgatagaatttctcactttttcaatcgggccaaactcaaaatgcgaactactactactgttgatcatgctcatgctgagggttaagaaaaaaaccaatatatatatattttttaattggggagtgcgctttgaattaaatattggttggataagaattaagatacgaaaggggatgaacttttacggttgcgtttatttttatttgtttgaggggtaattgtatgctttattttattttgcggaaataaaaattatgcccctagatactcttcaactttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0221G10-ujlkc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0221G10.1" temp_strand="+" temp_description="C06HBa0221G10.1  AC216652.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0221G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123483" stop="124631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123783" g_stop="124330" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="551" polyA_stop="590"/>
      <MATCH_line gen_id="C06HBa0221G10.1" gen_strand="+" ref_id="SGN-E392993" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0221G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123783" e_stop="124330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGACAGTTTT-TCAGGGCCTTTAAACGCCGAGTCTCTCCGGCCCGCCCACAGACCCCGATTTCAAACAAAATACC-TATATATTATAATCACAGCAACAATGAAACCATGAAGCCCGGCCCGACGAACATTAATAAGGCAAGCGATGACTCTAAGTTTACTAATTTTATAGATGAGACGAAGAAAAAGATCAAGGCTAATTCAAGTTTTGTTGGTGATGAAAATGGCCCAGTAACTAAACGGGCCACCACAAGAAGGGACAGTTTCAATGATAGAATTTCTCACTTTATCAATCGGGCCAAACTCAAAATGCGAACTACTACTACTGTTGATCATGCTCATGCTGATGGTTAAGAAAAAAAACAATATATATATATATATTAATTGGTGAGTGCGCTCTGAATTAAATATTGGTTGGATAAGAATTAAGATACGAAAGGAGATGAACTTTTACGGTTGCGTCTATTTTTATTTGTTTGATGAGTAATTGTATGCTTTATTTTATTCTGCTGAAATAAAAATTATGACACTAGATACTCTTCAACTTA</genome_strand>
        <mrna_strand>TTTGGCCCGTTTTTTCCGGGCCTTTAAACGCGGAGTTTTTCCGGCCCGCCCACAGACCCCGATTTCAAACAAAATACCTTTTTTTTTTTAATCCCCGCAACAATGAAACCCGGAAGCCCGGCCCGACGAACCTTAATAAGGCAAGGGATGACTTTAAGTTTACTAATTTTATAGATGGGACGAAGAAAAAGATCAAGGCTAATTCAAGTTTTGTTGGGGATGAAAATGGCCCCGTAACTAAACGGGCCCCCCCAAGAAGGGACAGTTTCAATGATAGAATTTCTCACTTTTTCAATCGGGCCAAACTCAAAATGCGAACTACTACTACTGTTGATCATGCTCATGCTGAGGGTTAAGAAAAAAACCAATATATATATATTTTTTAATTGGGGAGTGCGCTTTGAATTAAATATTGGTTGGATAAGAATTAAGATACGAAAGGGGATGAACTTTTACGGTTGCGTTTATTTTTATTTGTTTGAGGGGTAATTGTATGCTTTATTTTATTTTGCGGAAATAAAAATTATGCCCCTAGATACTCTTCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>154</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="5259" PGL_stop="8056"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5259" e_stop="5478"/>
            <exon e_start="5866" e_stop="5972"/>
            <exon e_start="6165" e_stop="6368"/>
            <exon e_start="6968" e_stop="7035"/>
            <exon e_start="7685" e_stop="8056"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.995"/>
          <exon-intron don_prob="0.965" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.863" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="5259" e_stop="5478" e_length="220"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="5479" i_stop="5865" i_length="387"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5866" e_stop="5972" e_length="107"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.980">
            <gDNA_intron_boundary i_start="5973" i_stop="6164" i_length="192"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6165" e_stop="6368" e_length="204"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.969">
            <gDNA_intron_boundary i_start="6369" i_stop="6967" i_length="599"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6968" e_stop="7035" e_length="68"/>
          </exon>
          <intron i_serial="4" don_prob="0.863" acc_prob="0.996">
            <gDNA_intron_boundary i_start="7036" i_stop="7684" i_length="649"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7685" e_stop="8056" e_length="372"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5259" stop="5478"/>
              <exon start="5866" stop="5972"/>
              <exon start="6165" stop="6368"/>
              <exon start="6968" stop="7035"/>
              <exon start="7685" stop="7886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5323" stop="5478"/>
              <exon start="5866" stop="5972"/>
              <exon start="6165" stop="6368"/>
              <exon start="6968" stop="7035"/>
              <exon start="7685" stop="8030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5324" stop="5478"/>
              <exon start="5866" stop="5972"/>
              <exon start="6165" stop="6322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5329" stop="5478"/>
              <exon start="5866" stop="5972"/>
              <exon start="6165" stop="6368"/>
              <exon start="6968" stop="7035"/>
              <exon start="7685" stop="7944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5329" stop="5478"/>
              <exon start="5866" stop="5972"/>
              <exon start="6165" stop="6368"/>
              <exon start="6968" stop="7035"/>
              <exon start="7685" stop="7716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5334" stop="5478"/>
              <exon start="5866" stop="5972"/>
              <exon start="6165" stop="6368"/>
              <exon start="6968" stop="7035"/>
              <exon start="7685" stop="7929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6206" stop="6368"/>
              <exon start="6968" stop="7035"/>
              <exon start="7685" stop="8018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6267" stop="6368"/>
              <exon start="6968" stop="7035"/>
              <exon start="7685" stop="7833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6267" stop="6368"/>
              <exon start="6968" stop="7035"/>
              <exon start="7685" stop="7771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7737" stop="8056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261690" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATCAGTCTCGAATCTTCTATAAACAAAAAGCTCCGATGCACCGTTCATCAAGCAGTGGATCTTTCTGGACGTTTTCTCGAAACGACGGTACGGTGATGAAAAGTGGAGTTTCCAGTTTTCAGACTGATGCTACGATAATGATCCGCCATGGCGTCGTCATACTAGTTGCTCTTTTGTGGTTTTCCACAGCCGAAGCTTCTCAGTGCTCAATTAATG : GACTGCCACTCGTGAAGAATATCAGCGAGTTTCCACTACACAACTACGGGAGGTCAGGTTTATCTCACACTACAATTGCTGGTTCAGTCTTGCACGGCATGAAAGAG : ATAGAGGTGTGGCTACAAACATTTGCCCCCGGATGTCGCACACCAATCCACAGGCACTCATGTGAAGAAGTTTTTATCGTCTTGAAGGGTCAAGGCACTCTCTATCTTGCTCCTAGTTCACATTCAAAGTACCCAGGAAACCCACAGGAGTTTCATATATTCCCTAATAGCACTTTTCATATCCCCGTTAATGATGTACACCAG : ATATGGAACACTGGTGAACATGAAGATTTACAAGCTTTAGTTGTTATATCTCGTCCTCCAGTGAAAGT : GTTTATGTACGATGACTGGTCGATGCCACACACAGCTGCCAAATTGAAGTTCCCGTATTACTGGGATGAGAAATGTTATCAGACAACAACGAGGAAAGACGAGCTTTAGCCAGAAAAGTAGGCTATGCAGTTACTTACATTTAGCTAGTGTTTGATATGTTTCTGTATTATGCTGGGGTCTAGCTTATTTGAAGGAGTCAATGATTGACTAAAACAGGTCTTGCAGTCATACATAGTACAAATGTGTTACCCAGTCACCACATTAGGAGAACTTTAGTTGTACTCCCTAGCTACTAATACATGATTTCTTTAATTGAGAAACATTAGTAAATGCGGTTTCTGTGTTGCTGTTATTGCATTTTTCGACTCCTT</gDNA_template>
            <first_frame> *  N  Q  S  R  I  F  Y  K  Q  K  A  P  M  H  R  S  S  S  S  G  S  F  W  T  F  S  R  N  D  G  T  V  M  K  S  G  V  S  S  F  Q  T  D  A  T  I  M  I  R  H  G  V  V  I  L  V  A  L  L  W  F  S  T  A  E  A  S  Q  C  S  I  N   : G  L  P  L  V  K  N  I  S  E  F  P  L  H  N  Y  G  R  S  G  L  S  H  T  T  I  A  G  S  V  L  H  G  M  K  E  :  I  E  V  W  L  Q  T  F  A  P  G  C  R  T  P  I  H  R  H  S  C  E  E  V  F  I  V  L  K  G  Q  G  T  L  Y  L  A  P  S  S  H  S  K  Y  P  G  N  P  Q  E  F  H  I  F  P  N  S  T  F  H  I  P  V  N  D  V  H  Q  :  I  W  N  T  G  E  H  E  D  L  Q  A  L  V  V  I  S  R  P  P  V  K  V :   F  M  Y  D  D  W  S  M  P  H  T  A  A  K  L  K  F  P  Y  Y  W  D  E  K  C  Y  Q  T  T  T  R  K  D  E  L  *  P  E  K  *  A  M  Q  L  L  T  F  S  *  C  L  I  C  F  C  I  M  L  G  S  S  L  F  E  G  V  N  D  *  L  K  Q  V  L  Q  S  Y  I  V  Q  M  C  Y  P  V  T  T  L  G  E  L  *  L  Y  S  L  A  T  N  T  *  F  L  *  L  R  N  I  S  K  C  G  F  C  V  A  V  I  A  F  F  D  S   </first_frame>
            <second_frame>  K  I  S  L  E  S  S  I  N  K  K  L  R  C  T  V  H  Q  A  V  D  L  S  G  R  F  L  E  T  T  V  R  *  *  K  V  E  F  P  V  F  R  L  M  L  R  *  *  S  A  M  A  S  S  Y  *  L  L  F  C  G  F  P  Q  P  K  L  L  S  A  Q  L  M  :  D  C  H  S  *  R  I  S  A  S  F  H  Y  T  T  T  G  G  Q  V  Y  L  T  L  Q  L  L  V  Q  S  C  T  A  *  K  R :   *  R  C  G  Y  K  H  L  P  P  D  V  A  H  Q  S  T  G  T  H  V  K  K  F  L  S  S  *  R  V  K  A  L  S  I  L  L  L  V  H  I  Q  S  T  Q  E  T  H  R  S  F  I  Y  S  L  I  A  L  F  I  S  P  L  M  M  Y  T  R :   Y  G  T  L  V  N  M  K  I  Y  K  L  *  L  L  Y  L  V  L  Q  *  K   : C  L  C  T  M  T  G  R  C  H  T  Q  L  P  N  *  S  S  R  I  T  G  M  R  N  V  I  R  Q  Q  R  G  K  T  S  F  S  Q  K  S  R  L  C  S  Y  L  H  L  A  S  V  *  Y  V  S  V  L  C  W  G  L  A  Y  L  K  E  S  M  I  D  *  N  R  S  C  S  H  T  *  Y  K  C  V  T  Q  S  P  H  *  E  N  F  S  C  T  P  *  L  L  I  H  D  F  F  N  *  E  T  L  V  N  A  V  S  V  L  L  L  L  H  F  S  T  P  </second_frame>
            <third_frame>   K  S  V  S  N  L  L  *  T  K  S  S  D  A  P  F  I  K  Q  W  I  F  L  D  V  F  S  K  R  R  Y  G  D  E  K  W  S  F  Q  F  S  D  *  C  Y  D  N  D  P  P  W  R  R  H  T  S  C  S  F  V  V  F  H  S  R  S  F  S  V  L  N  *  W :   T  A  T  R  E  E  Y  Q  R  V  S  T  T  Q  L  R  E  V  R  F  I  S  H  Y  N  C  W  F  S  L  A  R  H  E  R   : D  R  G  V  A  T  N  I  C  P  R  M  S  H  T  N  P  Q  A  L  M  *  R  S  F  Y  R  L  E  G  S  R  H  S  L  S  C  S  *  F  T  F  K  V  P  R  K  P  T  G  V  S  Y  I  P  *  *  H  F  S  Y  P  R  *  *  C  T  P   : D  M  E  H  W  *  T  *  R  F  T  S  F  S  C  Y  I  S  S  S  S  E  S  :  V  Y  V  R  *  L  V  D  A  T  H  S  C  Q  I  E  V  P  V  L  L  G  *  E  M  L  S  D  N  N  E  E  R  R  A  L  A  R  K  V  G  Y  A  V  T  Y  I  *  L  V  F  D  M  F  L  Y  Y  A  G  V  *  L  I  *  R  S  Q  *  L  T  K  T  G  L  A  V  I  H  S  T  N  V  L  P  S  H  H  I  R  R  T  L  V  V  L  P  S  Y  *  Y  M  I  S  L  I  E  K  H  *  *  M  R  F  L  C  C  C  Y  C  I  F  R  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5262" stop="5478"/>
                    <exon start="5866" stop="5972"/>
                    <exon start="6165" stop="6368"/>
                    <exon start="6968" stop="7035"/>
                    <exon start="7685" stop="7793"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQSRIFYKQKAPMHRSSSSGSFWTFSRNDGTVMKSGVSSFQTDATIMIRHGVVILVALLWFSTAEASQCSINGLPLVKNISEFPLHNYGRSGLSHTTIAGSVLHGMKEIEVWLQTFAPGCRTPIHRHSCEEVFIVLKGQGTLYLAPSSHSKYPGNPQEFHIFPNSTFHIPVNDVHQIWNTGEHEDLQALVVISRPPVKVFMYDDWSMPHTAAKLKFPYYWDEKCYQTTTRKDEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="5360" e_stop="5812"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="5360" e_stop="5812" e_length="453"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5360" stop="5812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400425" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAGTGGAGTTTCCAGTTTTCAGACTGATGCTACGATAATGATCCGCCATGGCGTCGTCATACTAGTTGCTCTTTTGTGGTTTTCCACAGCCGAAGCTTCTCAGTGCTCAATTAATGGCAAGTCTTCTCATCATTTCCTCTGTATGTGTATGAGAAAAATTTGATATGTATCATTATAAATTTTCACTAAGTAGTAGTGTAGTGGATGCAATGCACTGATATTCTGTTCTCACTAATTTAAAACCATGATTCTGCCTTCAAGTTAGGGAAAAATTCCTACTGGAGGAAATTCTGGGGAGCTTAGAAGCTGATTTGGATTAGTTGTGGCCCTTTTAATTCTAGAAGAAACAAGTTATTGGTTCCTTTGACTGAATTTCCAATGATCGATTGATAATATGCTCAATTGTTTTGAACTGTAAAGAAATTAATTAACATTTTCATTTGGTTGTTA</gDNA_template>
            <first_frame> E  K  W  S  F  Q  F  S  D  *  C  Y  D  N  D  P  P  W  R  R  H  T  S  C  S  F  V  V  F  H  S  R  S  F  S  V  L  N  *  W  Q  V  F  S  S  F  P  L  Y  V  Y  E  K  N  L  I  C  I  I  I  N  F  H  *  V  V  V  *  W  M  Q  C  T  D  I  L  F  S  L  I  *  N  H  D  S  A  F  K  L  G  K  N  S  Y  W  R  K  F  W  G  A  *  K  L  I  W  I  S  C  G  P  F  N  S  R  R  N  K  L  L  V  P  L  T  E  F  P  M  I  D  *  *  Y  A  Q  L  F  *  T  V  K  K  L  I  N  I  F  I  W  L  L </first_frame>
            <second_frame>  K  S  G  V  S  S  F  Q  T  D  A  T  I  M  I  R  H  G  V  V  I  L  V  A  L  L  W  F  S  T  A  E  A  S  Q  C  S  I  N  G  K  S  S  H  H  F  L  C  M  C  M  R  K  I  *  Y  V  S  L  *  I  F  T  K  *  *  C  S  G  C  N  A  L  I  F  C  S  H  *  F  K  T  M  I  L  P  S  S  *  G  K  I  P  T  G  G  N  S  G  E  L  R  S  *  F  G  L  V  V  A  L  L  I  L  E  E  T  S  Y  W  F  L  *  L  N  F  Q  *  S  I  D  N  M  L  N  C  F  E  L  *  R  N  *  L  T  F  S  F  G  C   </second_frame>
            <third_frame>   K  V  E  F  P  V  F  R  L  M  L  R  *  *  S  A  M  A  S  S  Y  *  L  L  F  C  G  F  P  Q  P  K  L  L  S  A  Q  L  M  A  S  L  L  I  I  S  S  V  C  V  *  E  K  F  D  M  Y  H  Y  K  F  S  L  S  S  S  V  V  D  A  M  H  *  Y  S  V  L  T  N  L  K  P  *  F  C  L  Q  V  R  E  K  F  L  L  E  E  I  L  G  S  L  E  A  D  L  D  *  L  W  P  F  *  F  *  K  K  Q  V  I  G  S  F  D  *  I  S  N  D  R  L  I  I  C  S  I  V  L  N  C  K  E  I  N  *  H  F  H  L  V  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0221G10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="16441" PGL_stop="18491"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16441" e_stop="16652"/>
            <exon e_start="16885" e_stop="16984"/>
            <exon e_start="17053" e_stop="17612"/>
            <exon e_start="17681" e_stop="17744"/>
            <exon e_start="18407" e_stop="18491"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.374" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="0.998"/>
          <exon-intron don_prob="0.999" acc_prob="0.931" e_score="0.969"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16441" e_stop="16652" e_length="212"/>
          </exon>
          <intron i_serial="1" don_prob="0.374" acc_prob="0.994">
            <gDNA_intron_boundary i_start="16653" i_stop="16884" i_length="232"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16885" e_stop="16984" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="16985" i_stop="17052" i_length="68"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="17053" e_stop="17612" e_length="560"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="17613" i_stop="17680" i_length="68"/>
          </intron>
          <exon e_serial="4" e_score="0.969">
            <gDNA_exon_boundary e_start="17681" e_stop="17744" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.931">
            <gDNA_intron_boundary i_start="17745" i_stop="18406" i_length="662"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="18407" e_stop="18491" e_length="85"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16441" stop="16652"/>
              <exon start="16885" stop="16984"/>
              <exon start="17053" stop="17481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16469" stop="16652"/>
              <exon start="16885" stop="16984"/>
              <exon start="17053" stop="17497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16500" stop="16652"/>
              <exon start="16885" stop="16984"/>
              <exon start="17053" stop="17512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16540" stop="16652"/>
              <exon start="16885" stop="16984"/>
              <exon start="17053" stop="17436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17387" stop="17612"/>
              <exon start="17681" stop="17744"/>
              <exon start="18407" stop="18491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482506" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGATATTATTATGGGTTTGAAGAATGACTTGGTGGTGTACACAAGATTAGAATGTGAGAGCTGTGAGGAAATGACTTGTTGTATAGAGAAAGCTAAAGAAGAAGGAGCAGATCTGGTGGAGCTTTGCATTGACGACTTCACTTTCTCTGACATTTCACAACTTGAAGAACTACTCAAGCAAAGAAGTTTACCATCCATAGTTTCTTTCAG : GCCAAAATCTCCGATAAATTCTGAGGGCAAGAAAACATGTATCCAAGTTCTCAAATTAGCTGTGGAATTGGACGTTGAGTTCGTCGAAGTCGACACTCAG : GTTGTCTGCCATCAAGTGGTTGCTGAATTGATGAAGAGCCGATCAAATAGCAAAATAATTGCTTCTACTTATGTCAATGGTGGAAACCCTACTAAAGACACACTTTGTAATTCCATCATAAACCTGCAGTCCACAGGAGCAGATATCATCAAACTTGTCATTGATGTAGCTTATATTACAGACGTTGCACCAGTTTTCCATATGCTTACACATTCTCAGGTCCCTCTAATTGTTAGGGCAGCAGGGGATAGAGGACTTATAAGCCAACTATTGGGTCCAAAATACGGTGCTTTCTTTGTTTGTGGATCTTTGGGAGGCAAATACACCCCTGGCTTGCCATCTTTGACCACCATTAAACAGGTTTATAAACTCCAATATGTCAACCCAGATACTAGAATTTTTGGTGTTATCTCAAATCCTGTTGGCCATAGCAAGGGACCCCTTCTACACAACCCCGCCTTTAGGCATACAGGATACAATGGAATATATGTCCCACTACTAGTTGACAATGTCAAGGAATTCTTTCGGGTTTTCTCATGCAATGACTATGCTGGTTTCAG : TGTTGGTATCCCACATAAGGAAGCAGCAGTACGGTGTTGTGATGAAGTTGATCCACTTGCTAAG : TCTATAGGAGCTGTAAACACAATTATAAGGAGGCCTTCTGACGGCAAGCTCATTGGTTATAATACAGATTGTGAGGCTTGTGTGA</gDNA_template>
            <first_frame> R  D  I  I  M  G  L  K  N  D  L  V  V  Y  T  R  L  E  C  E  S  C  E  E  M  T  C  C  I  E  K  A  K  E  E  G  A  D  L  V  E  L  C  I  D  D  F  T  F  S  D  I  S  Q  L  E  E  L  L  K  Q  R  S  L  P  S  I  V  S  F  R :   P  K  S  P  I  N  S  E  G  K  K  T  C  I  Q  V  L  K  L  A  V  E  L  D  V  E  F  V  E  V  D  T  Q  :  V  V  C  H  Q  V  V  A  E  L  M  K  S  R  S  N  S  K  I  I  A  S  T  Y  V  N  G  G  N  P  T  K  D  T  L  C  N  S  I  I  N  L  Q  S  T  G  A  D  I  I  K  L  V  I  D  V  A  Y  I  T  D  V  A  P  V  F  H  M  L  T  H  S  Q  V  P  L  I  V  R  A  A  G  D  R  G  L  I  S  Q  L  L  G  P  K  Y  G  A  F  F  V  C  G  S  L  G  G  K  Y  T  P  G  L  P  S  L  T  T  I  K  Q  V  Y  K  L  Q  Y  V  N  P  D  T  R  I  F  G  V  I  S  N  P  V  G  H  S  K  G  P  L  L  H  N  P  A  F  R  H  T  G  Y  N  G  I  Y  V  P  L  L  V  D  N  V  K  E  F  F  R  V  F  S  C  N  D  Y  A  G  F  S :   V  G  I  P  H  K  E  A  A  V  R  C  C  D  E  V  D  P  L  A  K  :  S  I  G  A  V  N  T  I  I  R  R  P  S  D  G  K  L  I  G  Y  N  T  D  C  E  A  C  V  </first_frame>
            <second_frame>  E  I  L  L  W  V  *  R  M  T  W  W  C  T  Q  D  *  N  V  R  A  V  R  K  *  L  V  V  *  R  K  L  K  K  K  E  Q  I  W  W  S  F  A  L  T  T  S  L  S  L  T  F  H  N  L  K  N  Y  S  S  K  E  V  Y  H  P  *  F  L  S   : G  Q  N  L  R  *  I  L  R  A  R  K  H  V  S  K  F  S  N  *  L  W  N  W  T  L  S  S  S  K  S  T  L  R :   L  S  A  I  K  W  L  L  N  *  *  R  A  D  Q  I  A  K  *  L  L  L  L  M  S  M  V  E  T  L  L  K  T  H  F  V  I  P  S  *  T  C  S  P  Q  E  Q  I  S  S  N  L  S  L  M  *  L  I  L  Q  T  L  H  Q  F  S  I  C  L  H  I  L  R  S  L  *  L  L  G  Q  Q  G  I  E  D  L  *  A  N  Y  W  V  Q  N  T  V  L  S  L  F  V  D  L  W  E  A  N  T  P  L  A  C  H  L  *  P  P  L  N  R  F  I  N  S  N  M  S  T  Q  I  L  E  F  L  V  L  S  Q  I  L  L  A  I  A  R  D  P  F  Y  T  T  P  P  L  G  I  Q  D  T  M  E  Y  M  S  H  Y  *  L  T  M  S  R  N  S  F  G  F  S  H  A  M  T  M  L  V  S   : V  L  V  S  H  I  R  K  Q  Q  Y  G  V  V  M  K  L  I  H  L  L  S :   L  *  E  L  *  T  Q  L  *  G  G  L  L  T  A  S  S  L  V  I  I  Q  I  V  R  L  V  * </second_frame>
            <third_frame>   R  Y  Y  Y  G  F  E  E  *  L  G  G  V  H  K  I  R  M  *  E  L  *  G  N  D  L  L  Y  R  E  S  *  R  R  R  S  R  S  G  G  A  L  H  *  R  L  H  F  L  *  H  F  T  T  *  R  T  T  Q  A  K  K  F  T  I  H  S  F  F  Q  :  A  K  I  S  D  K  F  *  G  Q  E  N  M  Y  P  S  S  Q  I  S  C  G  I  G  R  *  V  R  R  S  R  H  S   : G  C  L  P  S  S  G  C  *  I  D  E  E  P  I  K  *  Q  N  N  C  F  Y  L  C  Q  W  W  K  P  Y  *  R  H  T  L  *  F  H  H  K  P  A  V  H  R  S  R  Y  H  Q  T  C  H  *  C  S  L  Y  Y  R  R  C  T  S  F  P  Y  A  Y  T  F  S  G  P  S  N  C  *  G  S  R  G  *  R  T  Y  K  P  T  I  G  S  K  I  R  C  F  L  C  L  W  I  F  G  R  Q  I  H  P  W  L  A  I  F  D  H  H  *  T  G  L  *  T  P  I  C  Q  P  R  Y  *  N  F  W  C  Y  L  K  S  C  W  P  *  Q  G  T  P  S  T  Q  P  R  L  *  A  Y  R  I  Q  W  N  I  C  P  T  T  S  *  Q  C  Q  G  I  L  S  G  F  L  M  Q  *  L  C  W  F  Q  :  C  W  Y  P  T  *  G  S  S  S  T  V  L  *  *  S  *  S  T  C  *   : V  Y  R  S  C  K  H  N  Y  K  E  A  F  *  R  Q  A  H  W  L  *  Y  R  L  *  G  L  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16441" stop="16652"/>
                    <exon start="16885" stop="16984"/>
                    <exon start="17053" stop="17612"/>
                    <exon start="17681" stop="17744"/>
                    <exon start="18407" stop="18490"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1020</number_coding_nucleotides>
                  <number_encoded_amino_acids>340</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDIIMGLKNDLVVYTRLECESCEEMTCCIEKAKEEGADLVELCIDDFTFSDISQLEELLKQRSLPSIVSFRPKSPINSEGKKTCIQVLKLAVELDVEFVEVDTQVVCHQVVAELMKSRSNSKIIASTYVNGGNPTKDTLCNSIINLQSTGADIIKLVIDVAYITDVAPVFHMLTHSQVPLIVRAAGDRGLISQLLGPKYGAFFVCGSLGGKYTPGLPSLTTIKQVYKLQYVNPDTRIFGVISNPVGHSKGPLLHNPAFRHTGYNGIYVPLLVDNVKEFFRVFSCNDYAGFSVGIPHKEAAVRCCDEVDPLAKSIGAVNTIIRRPSDGKLIGYNTDCEACV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="26244" PGL_stop="30580"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26244" e_stop="27307"/>
            <exon e_start="29636" e_stop="30178"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="0.997"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="26244" e_stop="27307" e_length="1064"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="27308" i_stop="29635" i_length="2328"/>
          </intron>
          <exon e_serial="2" e_score="0.976">
            <gDNA_exon_boundary e_start="29636" e_stop="30178" e_length="543"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26244" stop="27022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26253" stop="26779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26260" stop="26705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26265" stop="26802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26266" stop="27119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26267" stop="26935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26267" stop="26857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26288" stop="27307"/>
              <exon start="29636" stop="30178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26295" stop="26907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26296" stop="26819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26296" stop="26705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26438" stop="26792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26465" stop="27214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26465" stop="27176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26465" stop="27131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26465" stop="27080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26465" stop="26732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26598" stop="27042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26682" stop="27307"/>
              <exon start="29636" stop="29653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26991" stop="27307"/>
              <exon start="29636" stop="29941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27093" stop="27307"/>
              <exon start="29636" stop="30070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27209" stop="27307"/>
              <exon start="29636" stop="30028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539370" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTCTTCTTCGACGGTCCTCCCCAACTTCCATACAGATTCACCTGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCGGATCACCAG : GGTCCACTTTCTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTCTTTTGTGAAGCGAATCTCAGATTTCCATCTGCTACTGTTGCTGGCGAAATTTCTGGACATTAATGCAGATGTTCCTGCATTGGCAGAATGTGTGCTTACACAGTCAGCTGTCCCAGAAGGTTACAAGCTCCTTATAGAATCGATGGCTAGTGCCTCTTAAGCAGCATCGCAGACATCAGGTACCAGTGATGACATTCTCTTGAGTCGTTACATGTGTTGCAGTGCAGAAATCCTCTTAATGTTATATTTACCACCAATGAGCTGTTTGGATACTTTTGTTAAATTATATTTGGTTTAATATAATTGGTTGAAGTTAAATTCTTCATATGTTATGGATGTGAGGGTATGAAGATGTTTATTGCGCATGTCTTTTATTGTATCGTCGTATCATAAATTTATAATTCTAATGAGAAGTTGCAGTGTTTTGAAGCTCGATTTAACAAAATAT</gDNA_template>
            <first_frame> L  S  S  S  T  V  L  P  N  F  H  T  D  S  P  A  L  N  I  S  I  T  I  G  I  Q  P  R  *  *  S  E  S  E  A  E  M  G  *  S  E  S  Q  L  T  T  H  M  P  Q  L  P  N  S  S  P  K  S  N  P  N  F  E  F  Q  F  N  R  K  P  Y  L  P  I  R  T  F  C  S  L  K  P  Q  M  I  G  L  A  S  L  I  W  T  T  L  I  H  P  S  P  L  S  I  L  L  T  V  L  S  F  I  L  L  T  R  V  S  A  Q  F  P  V  P  P  Y  S  P  P  V  H  S  V  E  R  *  P  W  T  T  *  L  L  N  K  C  E  L  L  D  K  R  T  L  T  A  N  S  F  P  S  I  V  M  P  P  M  P  F  N  I  M  S  M  K  H  S  P  L  L  S  K  G  V  V  L  C  M  V  Q  Y  P  L  K  A  K  W  K  S  I  L  F  M  S  R  P  S  K  G  P  R  K  I  C  C  F  Y  A  I  L  M  R  R  N  W  W  M  L  *  L  L  D  *  G  *  G  K  *  G  L  Y  L  L  R  Q  L  V  R  I  K  R  I  T  L  C  Q  L  Q  R  S  Y  R  Q  L  S  Y  I  R  R  V  I  *  R  N  G  *  P  L  *  *  S  L  R  *  M  T  M  A  L  P  M  Y  I  L  R  L  F  R  *  V  I  C  V  *  D  C  S  R  K  A  G  L  R  R  M  L  R  M  R  L  I  Q  S  F  P  R  *  R  K  M  W  W  *  E  S  R  T  Q  E  K  L  I  T  T  S  S  W  L  L  S  R  L  R  I  T  R :   V  H  F  L  H  H  F  P  L  K  T  G  L  F  Q  *  A  *  M  H  *  K  I  I  S  I  E  Q  R  V  F  L  L  *  S  E  S  Q  I  S  I  C  Y  C  C  W  R  N  F  W  T  L  M  Q  M  F  L  H  W  Q  N  V  C  L  H  S  Q  L  S  Q  K  V  T  S  S  L  *  N  R  W  L  V  P  L  K  Q  H  R  R  H  Q  V  P  V  M  T  F  S  *  V  V  T  C  V  A  V  Q  K  S  S  *  C  Y  I  Y  H  Q  *  A  V  W  I  L  L  L  N  Y  I  W  F  N  I  I  G  *  S  *  I  L  H  M  L  W  M  *  G  Y  E  D  V  Y  C  A  C  L  L  L  Y  R  R  I  I  N  L  *  F  *  *  E  V  A  V  F  *  S  S  I  *  Q  N   </first_frame>
            <second_frame>  F  L  L  R  R  S  S  P  T  S  I  Q  I  H  L  H  *  T  Y  Q  S  P  *  E  Y  N  Q  D  D  D  Q  N  Q  K  Q  R  W  V  R  A  S  H  N  *  Q  P  T  C  H  N  C  P  T  Q  V  P  N  R  I  P  T  S  S  S  S  S  I  A  N  P  I  F  Q  S  E  P  F  A  R  *  N  P  R  *  L  V  S  L  H  *  Y  G  Q  P  S  Y  T  H  L  L  F  Q  S  Y  S  R  F  Y  P  L  S  C  L  P  G  *  A  H  N  S  R  S  H  R  T  A  R  R  F  I  R  *  K  D  D  H  G  R  P  N  C  *  T  N  A  S  Y  *  T  R  E  P  S  L  R  T  R  F  L  R  S  *  C  R  Q  C  L  S  T  L  C  Q  *  N  T  R  L  C  C  Q  K  G  W  F  Y  V  W  Y  S  I  P  *  R  Q  S  G  S  P  F  Y  L  *  A  A  P  A  R  D  R  G  K  F  V  A  S  T  R  S  *  *  G  E  I  G  G  C  Y  S  Y  W  I  R  D  E  E  S  R  V  Y  I  Y  S  D  N  *  S  G  *  K  G  L  H  Y  V  N  C  R  G  L  T  G  S  *  V  T  F  G  G  *  F  E  G  M  G  D  R  Y  S  E  A  *  G  E  *  R  W  R  C  R  C  T  F  *  G  F  S  D  E  *  Y  V  C  E  I  V  Q  G  R  L  V  *  D  G  C  *  G  *  D  *  S  K  A  F  Q  D  E  E  R  C  G  G  R  S  Q  G  H  K  R  S  *  *  R  L  L  L  G  C  C  Q  D  C  G  S  P   : G  S  T  F  F  I  I  S  H  *  K  Q  D  Y  S  S  E  H  E  C  I  E  R  S  F  Q  S  N  K  E  S  F  F  C  E  A  N  L  R  F  P  S  A  T  V  A  G  E  I  S  G  H  *  C  R  C  S  C  I  G  R  M  C  A  Y  T  V  S  C  P  R  R  L  Q  A  P  Y  R  I  D  G  *  C  L  L  S  S  I  A  D  I  R  Y  Q  *  *  H  S  L  E  S  L  H  V  L  Q  C  R  N  P  L  N  V  I  F  T  T  N  E  L  F  G  Y  F  C  *  I  I  F  G  L  I  *  L  V  E  V  K  F  F  I  C  Y  G  C  E  G  M  K  M  F  I  A  H  V  F  Y  C  I  V  V  S  *  I  Y  N  S  N  E  K  L  Q  C  F  E  A  R  F  N  K  I  </second_frame>
            <third_frame>   F  F  F  D  G  P  P  Q  L  P  Y  R  F  T  C  T  K  H  I  N  H  H  R  N  T  T  K  M  M  I  R  I  R  S  R  D  G  L  E  R  V  T  I  D  N  P  H  A  T  I  A  Q  L  K  S  Q  I  E  S  Q  L  R  V  P  V  Q  S  Q  T  L  S  S  N  Q  N  L  L  L  A  K  T  P  D  D  W  S  R  F  T  D  M  D  N  P  H  T  P  I  S  S  F  N  L  T  H  G  S  I  L  Y  L  A  Y  Q  G  E  R  T  I  P  G  P  T  V  Q  P  A  G  S  F  G  R  K  M  T  M  D  D  L  I  A  K  Q  M  R  V  T  R  Q  E  N  P  H  C  E  L  V  S  F  D  R  D  A  A  N  A  F  Q  H  Y  V  N  E  T  L  A  F  A  V  K  R  G  G  F  M  Y  G  T  V  S  P  E  G  K  V  E  V  H  F  I  Y  E  P  P  Q  Q  G  T  E  E  N  L  L  L  L  R  D  P  D  E  E  K  L  V  D  A  I  A  I  G  L  G  M  R  K  V  G  F  I  F  T  Q  T  I  S  Q  D  K  K  D  Y  T  M  S  T  A  E  V  L  Q  A  A  E  L  H  S  E  G  D  L  K  E  W  V  T  A  I  V  K  L  E  V  N  D  D  G  A  A  D  V  H  F  E  A  F  Q  M  S  D  M  C  V  R  L  F  K  E  G  W  F  E  T  D  V  K  D  E  I  D  P  K  L  S  K  M  K  K  D  V  V  V  G  V  K  D  T  R  E  V  D  N  D  F  F  L  V  V  V  K  I  A  D  H  Q  :  G  P  L  S  S  S  F  P  I  E  N  R  I  I  P  V  S  M  N  A  L  K  D  H  F  N  R  T  K  S  L  S  F  V  K  R  I  S  D  F  H  L  L  L  L  L  A  K  F  L  D  I  N  A  D  V  P  A  L  A  E  C  V  L  T  Q  S  A  V  P  E  G  Y  K  L  L  I  E  S  M  A  S  A  S  *  A  A  S  Q  T  S  G  T  S  D  D  I  L  L  S  R  Y  M  C  C  S  A  E  I  L  L  M  L  Y  L  P  P  M  S  C  L  D  T  F  V  K  L  Y  L  V  *  Y  N  W  L  K  L  N  S  S  Y  V  M  D  V  R  V  *  R  C  L  L  R  M  S  F  I  V  S  S  Y  H  K  F  I  I  L  M  R  S  C  S  V  L  K  L  D  L  T  K  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26246" stop="27307"/>
                    <exon start="29636" stop="29890"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1314</number_coding_nucleotides>
                  <number_encoded_amino_acids>438</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFDGPPQLPYRFTCTKHINHHRNTTKMMIRIRSRDGLERVTIDNPHATIAQLKSQIESQLRVPVQSQTLSSNQNLLLAKTPDDWSRFTDMDNPHTPISSFNLTHGSILYLAYQGERTIPGPTVQPAGSFGRKMTMDDLIAKQMRVTRQENPHCELVSFDRDAANAFQHYVNETLAFAVKRGGFMYGTVSPEGKVEVHFIYEPPQQGTEENLLLLRDPDEEKLVDAIAIGLGMRKVGFIFTQTISQDKKDYTMSTAEVLQAAELHSEGDLKEWVTAIVKLEVNDDGAADVHFEAFQMSDMCVRLFKEGWFETDVKDEIDPKLSKMKKDVVVGVKDTREVDNDFFLVVVKIADHQGPLSSSFPIENRIIPVSMNALKDHFNRTKSLSFVKRISDFHLLLLLAKFLDINADVPALAECVLTQSAVPEGYKLLIESMASAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="26244" e_stop="27307"/>
            <exon e_start="29636" e_stop="30047"/>
            <exon e_start="30559" e_stop="30580"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="0.999"/>
          <exon-intron don_prob="0.000" acc_prob="0.625" e_score="0.995"/>
          <exon-only e_score="0.545"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="26244" e_stop="27307" e_length="1064"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="27308" i_stop="29635" i_length="2328"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="29636" e_stop="30047" e_length="412"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.625">
            <gDNA_intron_boundary i_start="30048" i_stop="30558" i_length="511"/>
          </intron>
          <exon e_serial="3" e_score="0.545">
            <gDNA_exon_boundary e_start="30559" e_stop="30580" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26244" stop="27022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26253" stop="26779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26260" stop="26705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26265" stop="26802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26266" stop="27119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26267" stop="26935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26267" stop="26857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26295" stop="26907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26296" stop="26819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26296" stop="26705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26438" stop="26792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26465" stop="27214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26465" stop="27176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26465" stop="27131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26465" stop="27080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26465" stop="26732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26598" stop="27042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26682" stop="27307"/>
              <exon start="29636" stop="29653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26991" stop="27307"/>
              <exon start="29636" stop="29941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27053" stop="27307"/>
              <exon start="29636" stop="30047"/>
              <exon start="30559" stop="30580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27088" stop="27307"/>
              <exon start="29636" stop="30047"/>
              <exon start="30559" stop="30580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27209" stop="27307"/>
              <exon start="29636" stop="30028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539370" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTCTTCTTCGACGGTCCTCCCCAACTTCCATACAGATTCACCTGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCGGATCACCAG : GGTCCACTTTCTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTCTTTTGTGAAGCGAATCTCAGATTTCCATCTGCTACTGTTGCTGGCGAAATTTCTGGACATTAATGCAGATGTTCCTGCATTGGCAGAATGTGTGCTTACACAGTCAGCTGTCCCAGAAGGTTACAAGCTCCTTATAGAATCGATGGCTAGTGCCTCTTAAGCAGCATCGCAGACATCAGGTACCAGTGATGACATTCTCTTGAGTCGTTACATGTGTTGCAGTGCAGAAATCCTCTTAATGTTATATTTACCACCAATGAGCTGTTTGGATACTTTTGTTAAATTATATTTGGTTTAATATAATTGGTTGAAGTTAA : ATACCGTATGAAAAATCACAAA</gDNA_template>
            <first_frame> L  S  S  S  T  V  L  P  N  F  H  T  D  S  P  A  L  N  I  S  I  T  I  G  I  Q  P  R  *  *  S  E  S  E  A  E  M  G  *  S  E  S  Q  L  T  T  H  M  P  Q  L  P  N  S  S  P  K  S  N  P  N  F  E  F  Q  F  N  R  K  P  Y  L  P  I  R  T  F  C  S  L  K  P  Q  M  I  G  L  A  S  L  I  W  T  T  L  I  H  P  S  P  L  S  I  L  L  T  V  L  S  F  I  L  L  T  R  V  S  A  Q  F  P  V  P  P  Y  S  P  P  V  H  S  V  E  R  *  P  W  T  T  *  L  L  N  K  C  E  L  L  D  K  R  T  L  T  A  N  S  F  P  S  I  V  M  P  P  M  P  F  N  I  M  S  M  K  H  S  P  L  L  S  K  G  V  V  L  C  M  V  Q  Y  P  L  K  A  K  W  K  S  I  L  F  M  S  R  P  S  K  G  P  R  K  I  C  C  F  Y  A  I  L  M  R  R  N  W  W  M  L  *  L  L  D  *  G  *  G  K  *  G  L  Y  L  L  R  Q  L  V  R  I  K  R  I  T  L  C  Q  L  Q  R  S  Y  R  Q  L  S  Y  I  R  R  V  I  *  R  N  G  *  P  L  *  *  S  L  R  *  M  T  M  A  L  P  M  Y  I  L  R  L  F  R  *  V  I  C  V  *  D  C  S  R  K  A  G  L  R  R  M  L  R  M  R  L  I  Q  S  F  P  R  *  R  K  M  W  W  *  E  S  R  T  Q  E  K  L  I  T  T  S  S  W  L  L  S  R  L  R  I  T  R :   V  H  F  L  H  H  F  P  L  K  T  G  L  F  Q  *  A  *  M  H  *  K  I  I  S  I  E  Q  R  V  F  L  L  *  S  E  S  Q  I  S  I  C  Y  C  C  W  R  N  F  W  T  L  M  Q  M  F  L  H  W  Q  N  V  C  L  H  S  Q  L  S  Q  K  V  T  S  S  L  *  N  R  W  L  V  P  L  K  Q  H  R  R  H  Q  V  P  V  M  T  F  S  *  V  V  T  C  V  A  V  Q  K  S  S  *  C  Y  I  Y  H  Q  *  A  V  W  I  L  L  L  N  Y  I  W  F  N  I  I  G  *  S  *  :  I  P  Y  E  K  S  Q  </first_frame>
            <second_frame>  F  L  L  R  R  S  S  P  T  S  I  Q  I  H  L  H  *  T  Y  Q  S  P  *  E  Y  N  Q  D  D  D  Q  N  Q  K  Q  R  W  V  R  A  S  H  N  *  Q  P  T  C  H  N  C  P  T  Q  V  P  N  R  I  P  T  S  S  S  S  S  I  A  N  P  I  F  Q  S  E  P  F  A  R  *  N  P  R  *  L  V  S  L  H  *  Y  G  Q  P  S  Y  T  H  L  L  F  Q  S  Y  S  R  F  Y  P  L  S  C  L  P  G  *  A  H  N  S  R  S  H  R  T  A  R  R  F  I  R  *  K  D  D  H  G  R  P  N  C  *  T  N  A  S  Y  *  T  R  E  P  S  L  R  T  R  F  L  R  S  *  C  R  Q  C  L  S  T  L  C  Q  *  N  T  R  L  C  C  Q  K  G  W  F  Y  V  W  Y  S  I  P  *  R  Q  S  G  S  P  F  Y  L  *  A  A  P  A  R  D  R  G  K  F  V  A  S  T  R  S  *  *  G  E  I  G  G  C  Y  S  Y  W  I  R  D  E  E  S  R  V  Y  I  Y  S  D  N  *  S  G  *  K  G  L  H  Y  V  N  C  R  G  L  T  G  S  *  V  T  F  G  G  *  F  E  G  M  G  D  R  Y  S  E  A  *  G  E  *  R  W  R  C  R  C  T  F  *  G  F  S  D  E  *  Y  V  C  E  I  V  Q  G  R  L  V  *  D  G  C  *  G  *  D  *  S  K  A  F  Q  D  E  E  R  C  G  G  R  S  Q  G  H  K  R  S  *  *  R  L  L  L  G  C  C  Q  D  C  G  S  P   : G  S  T  F  F  I  I  S  H  *  K  Q  D  Y  S  S  E  H  E  C  I  E  R  S  F  Q  S  N  K  E  S  F  F  C  E  A  N  L  R  F  P  S  A  T  V  A  G  E  I  S  G  H  *  C  R  C  S  C  I  G  R  M  C  A  Y  T  V  S  C  P  R  R  L  Q  A  P  Y  R  I  D  G  *  C  L  L  S  S  I  A  D  I  R  Y  Q  *  *  H  S  L  E  S  L  H  V  L  Q  C  R  N  P  L  N  V  I  F  T  T  N  E  L  F  G  Y  F  C  *  I  I  F  G  L  I  *  L  V  E  V  K :   Y  R  M  K  N  H  K </second_frame>
            <third_frame>   F  F  F  D  G  P  P  Q  L  P  Y  R  F  T  C  T  K  H  I  N  H  H  R  N  T  T  K  M  M  I  R  I  R  S  R  D  G  L  E  R  V  T  I  D  N  P  H  A  T  I  A  Q  L  K  S  Q  I  E  S  Q  L  R  V  P  V  Q  S  Q  T  L  S  S  N  Q  N  L  L  L  A  K  T  P  D  D  W  S  R  F  T  D  M  D  N  P  H  T  P  I  S  S  F  N  L  T  H  G  S  I  L  Y  L  A  Y  Q  G  E  R  T  I  P  G  P  T  V  Q  P  A  G  S  F  G  R  K  M  T  M  D  D  L  I  A  K  Q  M  R  V  T  R  Q  E  N  P  H  C  E  L  V  S  F  D  R  D  A  A  N  A  F  Q  H  Y  V  N  E  T  L  A  F  A  V  K  R  G  G  F  M  Y  G  T  V  S  P  E  G  K  V  E  V  H  F  I  Y  E  P  P  Q  Q  G  T  E  E  N  L  L  L  L  R  D  P  D  E  E  K  L  V  D  A  I  A  I  G  L  G  M  R  K  V  G  F  I  F  T  Q  T  I  S  Q  D  K  K  D  Y  T  M  S  T  A  E  V  L  Q  A  A  E  L  H  S  E  G  D  L  K  E  W  V  T  A  I  V  K  L  E  V  N  D  D  G  A  A  D  V  H  F  E  A  F  Q  M  S  D  M  C  V  R  L  F  K  E  G  W  F  E  T  D  V  K  D  E  I  D  P  K  L  S  K  M  K  K  D  V  V  V  G  V  K  D  T  R  E  V  D  N  D  F  F  L  V  V  V  K  I  A  D  H  Q  :  G  P  L  S  S  S  F  P  I  E  N  R  I  I  P  V  S  M  N  A  L  K  D  H  F  N  R  T  K  S  L  S  F  V  K  R  I  S  D  F  H  L  L  L  L  L  A  K  F  L  D  I  N  A  D  V  P  A  L  A  E  C  V  L  T  Q  S  A  V  P  E  G  Y  K  L  L  I  E  S  M  A  S  A  S  *  A  A  S  Q  T  S  G  T  S  D  D  I  L  L  S  R  Y  M  C  C  S  A  E  I  L  L  M  L  Y  L  P  P  M  S  C  L  D  T  F  V  K  L  Y  L  V  *  Y  N  W  L  K  L   : N  T  V  *  K  I  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26246" stop="27307"/>
                    <exon start="29636" stop="29890"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1314</number_coding_nucleotides>
                  <number_encoded_amino_acids>438</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFDGPPQLPYRFTCTKHINHHRNTTKMMIRIRSRDGLERVTIDNPHATIAQLKSQIESQLRVPVQSQTLSSNQNLLLAKTPDDWSRFTDMDNPHTPISSFNLTHGSILYLAYQGERTIPGPTVQPAGSFGRKMTMDDLIAKQMRVTRQENPHCELVSFDRDAANAFQHYVNETLAFAVKRGGFMYGTVSPEGKVEVHFIYEPPQQGTEENLLLLRDPDEEKLVDAIAIGLGMRKVGFIFTQTISQDKKDYTMSTAEVLQAAELHSEGDLKEWVTAIVKLEVNDDGAADVHFEAFQMSDMCVRLFKEGWFETDVKDEIDPKLSKMKKDVVVGVKDTREVDNDFFLVVVKIADHQGPLSSSFPIENRIIPVSMNALKDHFNRTKSLSFVKRISDFHLLLLLAKFLDINADVPALAECVLTQSAVPEGYKLLIESMASAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="26415" e_stop="26620"/>
            <exon e_start="26852" e_stop="27307"/>
            <exon e_start="29636" e_stop="30047"/>
            <exon e_start="30559" e_stop="30580"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.625" e_score="0.995"/>
          <exon-only e_score="0.545"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26415" e_stop="26620" e_length="206"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="26621" i_stop="26851" i_length="231"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26852" e_stop="27307" e_length="456"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="27308" i_stop="29635" i_length="2328"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="29636" e_stop="30047" e_length="412"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.625">
            <gDNA_intron_boundary i_start="30048" i_stop="30558" i_length="511"/>
          </intron>
          <exon e_serial="4" e_score="0.545">
            <gDNA_exon_boundary e_start="30559" e_stop="30580" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26415" stop="26620"/>
              <exon start="26852" stop="27307"/>
              <exon start="29636" stop="29766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26991" stop="27307"/>
              <exon start="29636" stop="29941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27053" stop="27307"/>
              <exon start="29636" stop="30047"/>
              <exon start="30559" stop="30580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27088" stop="27307"/>
              <exon start="29636" stop="30047"/>
              <exon start="30559" stop="30580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27209" stop="27307"/>
              <exon start="29636" stop="30028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539370" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAG : CCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCGGATCACCAG : GGTCCACTTTCTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTCTTTTGTGAAGCGAATCTCAGATTTCCATCTGCTACTGTTGCTGGCGAAATTTCTGGACATTAATGCAGATGTTCCTGCATTGGCAGAATGTGTGCTTACACAGTCAGCTGTCCCAGAAGGTTACAAGCTCCTTATAGAATCGATGGCTAGTGCCTCTTAAGCAGCATCGCAGACATCAGGTACCAGTGATGACATTCTCTTGAGTCGTTACATGTGTTGCAGTGCAGAAATCCTCTTAATGTTATATTTACCACCAATGAGCTGTTTGGATACTTTTGTTAAATTATATTTGGTTTAATATAATTGGTTGAAGTTAA : ATACCGTATGAAAAATCACAAA</gDNA_template>
            <first_frame> S  N  P  N  F  E  F  Q  F  N  R  K  P  Y  L  P  I  R  T  F  C  S  L  K  P  Q  M  I  G  L  A  S  L  I  W  T  T  L  I  H  P  S  P  L  S  I  L  L  T  V  L  S  F  I  L  L  T  R  V  S  A  Q  F  P  V  P  P  Y  S :   R  P  S  K  G  P  R  K  I  C  C  F  Y  A  I  L  M  R  R  N  W  W  M  L  *  L  L  D  *  G  *  G  K  *  G  L  Y  L  L  R  Q  L  V  R  I  K  R  I  T  L  C  Q  L  Q  R  S  Y  R  Q  L  S  Y  I  R  R  V  I  *  R  N  G  *  P  L  *  *  S  L  R  *  M  T  M  A  L  P  M  Y  I  L  R  L  F  R  *  V  I  C  V  *  D  C  S  R  K  A  G  L  R  R  M  L  R  M  R  L  I  Q  S  F  P  R  *  R  K  M  W  W  *  E  S  R  T  Q  E  K  L  I  T  T  S  S  W  L  L  S  R  L  R  I  T  R :   V  H  F  L  H  H  F  P  L  K  T  G  L  F  Q  *  A  *  M  H  *  K  I  I  S  I  E  Q  R  V  F  L  L  *  S  E  S  Q  I  S  I  C  Y  C  C  W  R  N  F  W  T  L  M  Q  M  F  L  H  W  Q  N  V  C  L  H  S  Q  L  S  Q  K  V  T  S  S  L  *  N  R  W  L  V  P  L  K  Q  H  R  R  H  Q  V  P  V  M  T  F  S  *  V  V  T  C  V  A  V  Q  K  S  S  *  C  Y  I  Y  H  Q  *  A  V  W  I  L  L  L  N  Y  I  W  F  N  I  I  G  *  S  *  :  I  P  Y  E  K  S  Q  </first_frame>
            <second_frame>  R  I  P  T  S  S  S  S  S  I  A  N  P  I  F  Q  S  E  P  F  A  R  *  N  P  R  *  L  V  S  L  H  *  Y  G  Q  P  S  Y  T  H  L  L  F  Q  S  Y  S  R  F  Y  P  L  S  C  L  P  G  *  A  H  N  S  R  S  H  R  T   : A  A  P  A  R  D  R  G  K  F  V  A  S  T  R  S  *  *  G  E  I  G  G  C  Y  S  Y  W  I  R  D  E  E  S  R  V  Y  I  Y  S  D  N  *  S  G  *  K  G  L  H  Y  V  N  C  R  G  L  T  G  S  *  V  T  F  G  G  *  F  E  G  M  G  D  R  Y  S  E  A  *  G  E  *  R  W  R  C  R  C  T  F  *  G  F  S  D  E  *  Y  V  C  E  I  V  Q  G  R  L  V  *  D  G  C  *  G  *  D  *  S  K  A  F  Q  D  E  E  R  C  G  G  R  S  Q  G  H  K  R  S  *  *  R  L  L  L  G  C  C  Q  D  C  G  S  P   : G  S  T  F  F  I  I  S  H  *  K  Q  D  Y  S  S  E  H  E  C  I  E  R  S  F  Q  S  N  K  E  S  F  F  C  E  A  N  L  R  F  P  S  A  T  V  A  G  E  I  S  G  H  *  C  R  C  S  C  I  G  R  M  C  A  Y  T  V  S  C  P  R  R  L  Q  A  P  Y  R  I  D  G  *  C  L  L  S  S  I  A  D  I  R  Y  Q  *  *  H  S  L  E  S  L  H  V  L  Q  C  R  N  P  L  N  V  I  F  T  T  N  E  L  F  G  Y  F  C  *  I  I  F  G  L  I  *  L  V  E  V  K :   Y  R  M  K  N  H  K </second_frame>
            <third_frame>   E  S  Q  L  R  V  P  V  Q  S  Q  T  L  S  S  N  Q  N  L  L  L  A  K  T  P  D  D  W  S  R  F  T  D  M  D  N  P  H  T  P  I  S  S  F  N  L  T  H  G  S  I  L  Y  L  A  Y  Q  G  E  R  T  I  P  G  P  T  V  Q  :  P  P  Q  Q  G  T  E  E  N  L  L  L  L  R  D  P  D  E  E  K  L  V  D  A  I  A  I  G  L  G  M  R  K  V  G  F  I  F  T  Q  T  I  S  Q  D  K  K  D  Y  T  M  S  T  A  E  V  L  Q  A  A  E  L  H  S  E  G  D  L  K  E  W  V  T  A  I  V  K  L  E  V  N  D  D  G  A  A  D  V  H  F  E  A  F  Q  M  S  D  M  C  V  R  L  F  K  E  G  W  F  E  T  D  V  K  D  E  I  D  P  K  L  S  K  M  K  K  D  V  V  V  G  V  K  D  T  R  E  V  D  N  D  F  F  L  V  V  V  K  I  A  D  H  Q  :  G  P  L  S  S  S  F  P  I  E  N  R  I  I  P  V  S  M  N  A  L  K  D  H  F  N  R  T  K  S  L  S  F  V  K  R  I  S  D  F  H  L  L  L  L  L  A  K  F  L  D  I  N  A  D  V  P  A  L  A  E  C  V  L  T  Q  S  A  V  P  E  G  Y  K  L  L  I  E  S  M  A  S  A  S  *  A  A  S  Q  T  S  G  T  S  D  D  I  L  L  S  R  Y  M  C  C  S  A  E  I  L  L  M  L  Y  L  P  P  M  S  C  L  D  T  F  V  K  L  Y  L  V  *  Y  N  W  L  K  L   : N  T  V  *  K  I  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26417" stop="26620"/>
                    <exon start="26852" stop="27307"/>
                    <exon start="29636" stop="29890"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>912</number_coding_nucleotides>
                  <number_encoded_amino_acids>304</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESQLRVPVQSQTLSSNQNLLLAKTPDDWSRFTDMDNPHTPISSFNLTHGSILYLAYQGERTIPGPTVQPPQQGTEENLLLLRDPDEEKLVDAIAIGLGMRKVGFIFTQTISQDKKDYTMSTAEVLQAAELHSEGDLKEWVTAIVKLEVNDDGAADVHFEAFQMSDMCVRLFKEGWFETDVKDEIDPKLSKMKKDVVVGVKDTREVDNDFFLVVVKIADHQGPLSSSFPIENRIIPVSMNALKDHFNRTKSLSFVKRISDFHLLLLLAKFLDINADVPALAECVLTQSAVPEGYKLLIESMASAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="27113" PGL_stop="26416"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27113" e_stop="26853"/>
            <exon e_start="26621" e_stop="26416"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.330" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27113" e_stop="26853" e_length="261"/>
          </exon>
          <intron i_serial="1" don_prob="0.330" acc_prob="0.000">
            <gDNA_intron_boundary i_start="26852" i_stop="26622" i_length="231"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="26621" e_stop="26416" e_length="206"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27113" stop="26853"/>
              <exon start="26621" stop="26416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284336" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATCGGCAGCGCCATCGTCATTCACCTCAAGCTTCACTATAGCGGTCACCCATTCCTTCAAATCACCCTCCGAATGTAACTCAGCTGCCTGTAAGACCTCTGCAGTTGACATAGTGTAATCCTTTTTATCCTGACTAATTGTCTGAGTAAATATAAACCCTACTTTCCTCATCCCTAATCCAATAGCTATAGCATCCACCAATTTCTCCTCATCAGGATCGCGTAGAAGCAACAAATTTTCCTCGGTCCCTTGCTGGGGCG : GCTGTACGGTGGGACCGGGAATTGTGCGCTCACCCTGGTAAGCAAGATAAAGGATAGAACCGTGAGTAAGATTGAAAGAGGAGATGGGTGTATGAGGGTTGTCCATATCAGTGAAGCGAGACCAATCATCTGGGGTTTTAGCGAGCAAAAGGTTCTGATTGGAAGATAGGGTTTGCGATTGAACTGGAACTCGAAGTTGGGATTCG</gDNA_template>
            <first_frame> H  R  Q  R  H  R  H  S  P  Q  A  S  L  *  R  S  P  I  P  S  N  H  P  P  N  V  T  Q  L  P  V  R  P  L  Q  L  T  *  C  N  P  F  Y  P  D  *  L  S  E  *  I  *  T  L  L  S  S  S  L  I  Q  *  L  *  H  P  P  I  S  P  H  Q  D  R  V  E  A  T  N  F  P  R  S  L  A  G  A  :  A  V  R  W  D  R  E  L  C  A  H  P  G  K  Q  D  K  G  *  N  R  E  *  D  *  K  R  R  W  V  Y  E  G  C  P  Y  Q  *  S  E  T  N  H  L  G  F  *  R  A  K  G  S  D  W  K  I  G  F  A  I  E  L  E  L  E  V  G  I   </first_frame>
            <second_frame>  I  G  S  A  I  V  I  H  L  K  L  H  Y  S  G  H  P  F  L  Q  I  T  L  R  M  *  L  S  C  L  *  D  L  C  S  *  H  S  V  I  L  F  I  L  T  N  C  L  S  K  Y  K  P  Y  F  P  H  P  *  S  N  S  Y  S  I  H  Q  F  L  L  I  R  I  A  *  K  Q  Q  I  F  L  G  P  L  L  G  R :   L  Y  G  G  T  G  N  C  A  L  T  L  V  S  K  I  K  D  R  T  V  S  K  I  E  R  G  D  G  C  M  R  V  V  H  I  S  E  A  R  P  I  I  W  G  F  S  E  Q  K  V  L  I  G  R  *  G  L  R  L  N  W  N  S  K  L  G  F  </second_frame>
            <third_frame>   S  A  A  P  S  S  F  T  S  S  F  T  I  A  V  T  H  S  F  K  S  P  S  E  C  N  S  A  A  C  K  T  S  A  V  D  I  V  *  S  F  L  S  *  L  I  V  *  V  N  I  N  P  T  F  L  I  P  N  P  I  A  I  A  S  T  N  F  S  S  S  G  S  R  R  S  N  K  F  S  S  V  P  C  W  G   : G  C  T  V  G  P  G  I  V  R  S  P  W  *  A  R  *  R  I  E  P  *  V  R  L  K  E  E  M  G  V  *  G  L  S  I  S  V  K  R  D  Q  S  S  G  V  L  A  S  K  R  F  *  L  E  D  R  V  C  D  *  T  G  T  R  S  W  D  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26887" stop="26853"/>
                    <exon start="26621" stop="26453"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQQIFLGPLLGRLYGGTGNCALTLVSKIKDRTVSKIERGDGCMRVVHISEARPIIWGFSEQKVLIGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="35317" PGL_stop="34623"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35317" e_stop="34623"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35317" e_stop="34623" e_length="695"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35317" stop="34623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317141" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTTCTCTCCTAAACCATTAATTTCAGCCATAACCAACAAAGCTTTTGCTTTCTTGTGAAGCATTCCTACTTTTTTGCCTTTGCTGTTGGCAAAAAAGAAATAACCAACTTATATAAGCCTTTCCTATCATTCTTCTCTTCAGCTATACGATAATAATGATACCATTCTTTCTTCTGCTTCTTCTGCAGAGCACTAGTTTCTCTGTACATGCCATTTTAGACCCAATTGATTTCTTAGCTTTACAAGCGATTCGAAAAGGCTTGGATGATTTGCCCGGTTCCAACTATTTTGCTTCCTGGGATTTCACTTCGGAGCCCTGTAACTTCGCCGGAGTTTACTGCGATGGAGATAAAGTGATCGCCTTGAATCTCGGTGATCCCAGAGCCGGAGCACCAGGGTTAACTGGAAACTTGGATCCTTCTATTGGAAAACTCTCTGCTCTTGCGGAGTTCACGGTGGTTCCGGGTCGGATAACTGGTCCATTGCCCGAAAGTTTTTCTCAGTTGAAGAAGCTGAGATTTCTAGGAGTTAGCCGGAACTTTCTCTCCGGTGATATTCCGGCGTCATTAGGCCTTCTCCGGGAGCTACAAACTCTTGATCTTAGTTTCAATCAGCTGACCGGGAGCATCCCTTGGGCTATTGGAGCTCTTCCGGCATTGTCCAACATTATACTGTGTCACAACCACTTGTCCG</gDNA_template>
            <first_frame> F  F  S  P  K  P  L  I  S  A  I  T  N  K  A  F  A  F  L  *  S  I  P  T  F  L  P  L  L  L  A  K  K  K  *  P  T  Y  I  S  L  S  Y  H  S  S  L  Q  L  Y  D  N  N  D  T  I  L  S  S  A  S  S  A  E  H  *  F  L  C  T  C  H  F  R  P  N  *  F  L  S  F  T  S  D  S  K  R  L  G  *  F  A  R  F  Q  L  F  C  F  L  G  F  H  F  G  A  L  *  L  R  R  S  L  L  R  W  R  *  S  D  R  L  E  S  R  *  S  Q  S  R  S  T  R  V  N  W  K  L  G  S  F  Y  W  K  T  L  C  S  C  G  V  H  G  G  S  G  S  D  N  W  S  I  A  R  K  F  F  S  V  E  E  A  E  I  S  R  S  *  P  E  L  S  L  R  *  Y  S  G  V  I  R  P  S  P  G  A  T  N  S  *  S  *  F  Q  S  A  D  R  E  H  P  L  G  Y  W  S  S  S  G  I  V  Q  H  Y  T  V  S  Q  P  L  V   </first_frame>
            <second_frame>  S  S  L  L  N  H  *  F  Q  P  *  P  T  K  L  L  L  S  C  E  A  F  L  L  F  C  L  C  C  W  Q  K  R  N  N  Q  L  I  *  A  F  P  I  I  L  L  F  S  Y  T  I  I  M  I  P  F  F  L  L  L  L  L  Q  S  T  S  F  S  V  H  A  I  L  D  P  I  D  F  L  A  L  Q  A  I  R  K  G  L  D  D  L  P  G  S  N  Y  F  A  S  W  D  F  T  S  E  P  C  N  F  A  G  V  Y  C  D  G  D  K  V  I  A  L  N  L  G  D  P  R  A  G  A  P  G  L  T  G  N  L  D  P  S  I  G  K  L  S  A  L  A  E  F  T  V  V  P  G  R  I  T  G  P  L  P  E  S  F  S  Q  L  K  K  L  R  F  L  G  V  S  R  N  F  L  S  G  D  I  P  A  S  L  G  L  L  R  E  L  Q  T  L  D  L  S  F  N  Q  L  T  G  S  I  P  W  A  I  G  A  L  P  A  L  S  N  I  I  L  C  H  N  H  L  S  </second_frame>
            <third_frame>   L  L  S  *  T  I  N  F  S  H  N  Q  Q  S  F  C  F  L  V  K  H  S  Y  F  F  A  F  A  V  G  K  K  E  I  T  N  L  Y  K  P  F  L  S  F  F  S  S  A  I  R  *  *  *  Y  H  S  F  F  C  F  F  C  R  A  L  V  S  L  Y  M  P  F  *  T  Q  L  I  S  *  L  Y  K  R  F  E  K  A  W  M  I  C  P  V  P  T  I  L  L  P  G  I  S  L  R  S  P  V  T  S  P  E  F  T  A  M  E  I  K  *  S  P  *  I  S  V  I  P  E  P  E  H  Q  G  *  L  E  T  W  I  L  L  L  E  N  S  L  L  L  R  S  S  R  W  F  R  V  G  *  L  V  H  C  P  K  V  F  L  S  *  R  S  *  D  F  *  E  L  A  G  T  F  S  P  V  I  F  R  R  H  *  A  F  S  G  S  Y  K  L  L  I  L  V  S  I  S  *  P  G  A  S  L  G  L  L  E  L  F  R  H  C  P  T  L  Y  C  V  T  T  T  C  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35199" stop="34624"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFPIILLFSYTIIMIPFFLLLLLQSTSFSVHAILDPIDFLALQAIRKGLDDLPGSNYFASWDFTSEPCNFAGVYCDGDKVIALNLGDPRAGAPGLTGNLDPSIGKLSALAEFTVVPGRITGPLPESFSQLKKLRFLGVSRNFLSGDIPASLGLLRELQTLDLSFNQLTGSIPWAIGALPALSNIILCHNHLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="41728" PGL_stop="38046"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41694" e_stop="41557"/>
            <exon e_start="41479" e_stop="41349"/>
            <exon e_start="41271" e_stop="41203"/>
            <exon e_start="40983" e_stop="40912"/>
            <exon e_start="39041" e_stop="38969"/>
            <exon e_start="38427" e_stop="38046"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.863" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.606" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.850" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41694" e_stop="41557" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.863">
            <gDNA_intron_boundary i_start="41556" i_stop="41480" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41479" e_stop="41349" e_length="131"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.606">
            <gDNA_intron_boundary i_start="41348" i_stop="41272" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41271" e_stop="41203" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.850">
            <gDNA_intron_boundary i_start="41202" i_stop="40984" i_length="219"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40983" e_stop="40912" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.970" acc_prob="1.000">
            <gDNA_intron_boundary i_start="40911" i_stop="39042" i_length="1870"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="39041" e_stop="38969" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.993">
            <gDNA_intron_boundary i_start="38968" i_stop="38428" i_length="541"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="38427" e_stop="38046" e_length="382"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41694" stop="41557"/>
              <exon start="41479" stop="41349"/>
              <exon start="41271" stop="41203"/>
              <exon start="40983" stop="40912"/>
              <exon start="39041" stop="38969"/>
              <exon start="38427" stop="38213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41694" stop="41557"/>
              <exon start="41479" stop="41349"/>
              <exon start="41271" stop="41203"/>
              <exon start="40983" stop="40912"/>
              <exon start="39041" stop="38970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41694" stop="41557"/>
              <exon start="41479" stop="41349"/>
              <exon start="41271" stop="41203"/>
              <exon start="40983" stop="40912"/>
              <exon start="39041" stop="38973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41694" stop="41557"/>
              <exon start="41479" stop="41349"/>
              <exon start="41271" stop="41203"/>
              <exon start="40983" stop="40912"/>
              <exon start="39041" stop="39005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41689" stop="41557"/>
              <exon start="41479" stop="41349"/>
              <exon start="41271" stop="41203"/>
              <exon start="40983" stop="40931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41679" stop="41557"/>
              <exon start="41479" stop="41349"/>
              <exon start="41271" stop="41203"/>
              <exon start="40983" stop="40912"/>
              <exon start="39041" stop="38969"/>
              <exon start="38427" stop="38322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41664" stop="41557"/>
              <exon start="41479" stop="41349"/>
              <exon start="41271" stop="41203"/>
              <exon start="40983" stop="40912"/>
              <exon start="39041" stop="38969"/>
              <exon start="38427" stop="38411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41639" stop="41557"/>
              <exon start="41479" stop="41349"/>
              <exon start="41271" stop="41203"/>
              <exon start="40983" stop="40912"/>
              <exon start="39041" stop="38969"/>
              <exon start="38427" stop="38249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41378" stop="41349"/>
              <exon start="41271" stop="41203"/>
              <exon start="40983" stop="40912"/>
              <exon start="39041" stop="38969"/>
              <exon start="38427" stop="38058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39004" stop="38969"/>
              <exon start="38427" stop="38046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217277" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAAATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAG : AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCT : TCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAG : CATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGG : GTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATG : CTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAAGTTGGCAGTAGAGATGAGATTCAAGATTGCTGGATTGTAATAGTTGTAGATGCAAAGTATTTCCATGTGAATAACAGACCTTTTAGGTGTTGAACTATTTATACAATTCTAGTTGTTGAACTTTTTAACCCTTGAATGGTTTACTGTGCTTTAGCCATTAAGTAGTAGAACTTTTCAGCTTGTTAAGTAGTCGTATTATATTGTAAATGCACATGGAAGTTTGTTTGACTGCTTGATATATGAGTAGGTAGTTTCAATAAACAAGTTGTCAGAAAA</gDNA_template>
            <first_frame> L  K  L  V  Y  E  I  C  R  S  A  I  K  F  E  F  L  S  L  L  P  H  I  K  F  M  E  I  V  A  K  L  Q  K  Q  F  M  D  F  I  S  A  L  Y  R  E  :  R  F  L  D  D  Q  F  L  Q  L  Q  N  L  Q  D  E  S  N  P  D  F  V  R  E  V  V  S  L  F  F  V  D  S  E  N  L  I  N  N  L  T  A  A  L :   Q  Q  Q  V  V  D  F  K  Q  V  D  S  H  V  H  Q  F  K  G  S  S  S  S :   I  G  A  Q  R  V  K  N  A  C  V  A  F  K  T  F  C  E  G  K  N  I  E  G :   C  V  Q  C  L  Q  Q  V  K  H  E  Y  F  L  V  K  N  K  L  E  T  L  M  M  :  L  E  K  Q  I  L  A  A  G  G  R  I  P  D  L  S  *  L  G  A  N  D  L  K  S  T  S  *  E  K  D  S  R  E  K  S  W  Q  *  R  *  D  S  R  L  L  D  C  N  S  C  R  C  K  V  F  P  C  E  *  Q  T  F  *  V  L  N  Y  L  Y  N  S  S  C  *  T  F  *  P  L  N  G  L  L  C  F  S  H  *  V  V  E  L  F  S  L  L  S  S  R  I  I  L  *  M  H  M  E  V  C  L  T  A  *  Y  M  S  R  *  F  Q  *  T  S  C  Q  K  </first_frame>
            <second_frame>  *  N  *  Y  M  K  S  V  D  L  Q  *  S  L  S  F  *  V  F  S  P  T  S  N  S  W  K  *  *  P  S  C  R  N  S  S  W  T  S  F  Q  L  C  T  V  R :   D  S  W  M  I  S  F  F  S  F  R  I  C  K  M  R  A  T  Q  T  L  F  V  K  *  F  H  F  S  L  *  I  Q  K  T  L  S  T  I  *  Q  Q  L   : F  N  N  R  L  *  I  L  S  K  L  I  P  M  S  T  S  S  R  V  A  V  P   : A  *  V  H  K  E  *  R  M  L  V  W  L  L  K  P  S  A  K  G  R  T  L  K   : G  V  C  N  V  C  S  R  *  N  M  N  I  F  L  *  R  T  N  L  K  P  *  *  C :   W  R  S  K  S  W  R  L  V  V  G  F  L  T  C  H  S  *  V  L  M  I  *  S  P  H  P  E  R  K  I  V  E  R  K  V  G  S  R  D  E  I  Q  D  C  W  I  V  I  V  V  D  A  K  Y  F  H  V  N  N  R  P  F  R  C  *  T  I  Y  T  I  L  V  V  E  L  F  N  P  *  M  V  Y  C  A  L  A  I  K  *  *  N  F  S  A  C  *  V  V  V  L  Y  C  K  C  T  W  K  F  V  *  L  L  D  I  *  V  G  S  F  N  K  Q  V  V  R  K </second_frame>
            <third_frame>   K  I  S  I  *  N  L  *  I  C  N  K  V  *  V  F  E  S  S  P  P  H  Q  I  H  G  N  S  S  Q  V  A  E  T  V  H  G  L  H  F  S  F  V  P  *   : E  I  L  G  *  S  V  S  S  A  S  E  F  A  R  *  E  Q  P  R  L  C  S  *  S  S  F  T  F  L  C  R  F  R  K  P  Y  Q  Q  S  D  S  S  S  :  S  T  T  G  C  R  F  *  A  S  *  F  P  C  P  P  V  Q  G  *  Q  F  Q  :  H  R  C  T  K  S  K  E  C  L  C  G  F  *  N  L  L  R  R  E  E  H  *  R  :  V  C  A  M  S  A  A  G  E  T  *  I  F  S  C  E  E  Q  T  *  N  L  D  D   : A  G  E  A  N  L  G  G  W  W  *  D  S  *  P  V  I  A  R  C  *  *  F  E  V  H  I  L  R  E  R  *  *  R  E  K  L  A  V  E  M  R  F  K  I  A  G  L  *  *  L  *  M  Q  S  I  S  M  *  I  T  D  L  L  G  V  E  L  F  I  Q  F  *  L  L  N  F  L  T  L  E  W  F  T  V  L  *  P  L  S  S  R  T  F  Q  L  V  K  *  S  Y  Y  I  V  N  A  H  G  S  L  F  D  C  L  I  Y  E  *  V  V  S  I  N  K  L  S  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41694" stop="41557"/>
                    <exon start="41479" stop="41349"/>
                    <exon start="41271" stop="41203"/>
                    <exon start="40983" stop="40912"/>
                    <exon start="39041" stop="38969"/>
                    <exon start="38427" stop="38377"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKLVYEICRSAIKFEFLSLLPHIKFMEIVAKLQKQFMDFISALYRERFLDDQFLQLQNLQDESNPDFVREVVSLFFVDSENLINNLTAALQQQVVDFKQVDSHVHQFKGSSSSIGAQRVKNACVAFKTFCEGKNIEGCVQCLQQVKHEYFLVKNKLETLMMLEKQILAAGGRIPDLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="41728" e_stop="41557"/>
            <exon e_start="41479" e_stop="41203"/>
            <exon e_start="40983" e_stop="40912"/>
            <exon e_start="39041" e_stop="38969"/>
            <exon e_start="38427" e_stop="38046"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.863" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.850" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41728" e_stop="41557" e_length="172"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.863">
            <gDNA_intron_boundary i_start="41556" i_stop="41480" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41479" e_stop="41203" e_length="277"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.850">
            <gDNA_intron_boundary i_start="41202" i_stop="40984" i_length="219"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40983" e_stop="40912" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.970" acc_prob="1.000">
            <gDNA_intron_boundary i_start="40911" i_stop="39042" i_length="1870"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39041" e_stop="38969" e_length="73"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.993">
            <gDNA_intron_boundary i_start="38968" i_stop="38428" i_length="541"/>
          </intron>
          <exon e_serial="5" e_score="0.955">
            <gDNA_exon_boundary e_start="38427" e_stop="38046" e_length="382"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41728" stop="41557"/>
              <exon start="41479" stop="41203"/>
              <exon start="40983" stop="40912"/>
              <exon start="39041" stop="38969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41728" stop="41557"/>
              <exon start="41479" stop="41203"/>
              <exon start="40983" stop="40912"/>
              <exon start="39041" stop="38969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41727" stop="41557"/>
              <exon start="41479" stop="41285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41616" stop="41557"/>
              <exon start="41479" stop="41203"/>
              <exon start="40983" stop="40912"/>
              <exon start="39041" stop="38969"/>
              <exon start="38427" stop="38267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41616" stop="41557"/>
              <exon start="41479" stop="41203"/>
              <exon start="40983" stop="40912"/>
              <exon start="39041" stop="38969"/>
              <exon start="38427" stop="38313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41616" stop="41557"/>
              <exon start="41479" stop="41203"/>
              <exon start="40983" stop="40912"/>
              <exon start="39041" stop="38969"/>
              <exon start="38427" stop="38350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41616" stop="41557"/>
              <exon start="41479" stop="41203"/>
              <exon start="40983" stop="40912"/>
              <exon start="39041" stop="38969"/>
              <exon start="38427" stop="38408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41613" stop="41557"/>
              <exon start="41479" stop="41213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39004" stop="38969"/>
              <exon start="38427" stop="38046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217277" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGTCAATTCGATGAGCATTGATTTGGTACCTATTAAAATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAG : AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAG : CATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGG : GTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATG : CTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAAGTTGGCAGTAGAGATGAGATTCAAGATTGCTGGATTGTAATAGTTGTAGATGCAAAGTATTTCCATGTGAATAACAGACCTTTTAGGTGTTGAACTATTTATACAATTCTAGTTGTTGAACTTTTTAACCCTTGAATGGTTTACTGTGCTTTAGCCATTAAGTAGTAGAACTTTTCAGCTTGTTAAGTAGTCGTATTATATTGTAAATGCACATGGAAGTTTGTTTGACTGCTTGATATATGAGTAGGTAGTTTCAATAAACAAGTTGTCAGAAAA</gDNA_template>
            <first_frame> K  V  N  S  M  S  I  D  L  V  P  I  K  I  S  I  *  N  L  *  I  C  N  K  V  *  V  F  E  S  S  P  P  H  Q  I  H  G  N  S  S  Q  V  A  E  T  V  H  G  L  H  F  S  F  V  P  *   : E  I  L  G  *  S  V  S  S  A  S  E  F  A  R  *  E  Q  P  R  L  C  S  *  S  S  F  T  F  L  C  R  F  R  K  P  Y  Q  Q  S  D  S  S  S  V  R  N  K  L  F  L  L  F  T  F  N  R  N  I  G  S  L  V  Y  Y  L  V  N  C  S  Q  Q  Q  V  V  D  F  K  Q  V  D  S  H  V  H  Q  F  K  G  S  S  S  S :   I  G  A  Q  R  V  K  N  A  C  V  A  F  K  T  F  C  E  G  K  N  I  E  G :   C  V  Q  C  L  Q  Q  V  K  H  E  Y  F  L  V  K  N  K  L  E  T  L  M  M  :  L  E  K  Q  I  L  A  A  G  G  R  I  P  D  L  S  *  L  G  A  N  D  L  K  S  T  S  *  E  K  D  S  R  E  K  S  W  Q  *  R  *  D  S  R  L  L  D  C  N  S  C  R  C  K  V  F  P  C  E  *  Q  T  F  *  V  L  N  Y  L  Y  N  S  S  C  *  T  F  *  P  L  N  G  L  L  C  F  S  H  *  V  V  E  L  F  S  L  L  S  S  R  I  I  L  *  M  H  M  E  V  C  L  T  A  *  Y  M  S  R  *  F  Q  *  T  S  C  Q  K  </first_frame>
            <second_frame>  K  S  I  R  *  A  L  I  W  Y  L  L  K  L  V  Y  E  I  C  R  S  A  I  K  F  E  F  L  S  L  L  P  H  I  K  F  M  E  I  V  A  K  L  Q  K  Q  F  M  D  F  I  S  A  L  Y  R  E  :  R  F  L  D  D  Q  F  L  Q  L  Q  N  L  Q  D  E  S  N  P  D  F  V  R  E  V  V  S  L  F  F  V  D  S  E  N  L  I  N  N  L  T  A  A  L  *  E  I  N  S  F  Y  C  L  P  L  T  E  I  L  D  H  *  F  I  I  W  S  I  V  V  N  N  R  L  *  I  L  S  K  L  I  P  M  S  T  S  S  R  V  A  V  P   : A  *  V  H  K  E  *  R  M  L  V  W  L  L  K  P  S  A  K  G  R  T  L  K   : G  V  C  N  V  C  S  R  *  N  M  N  I  F  L  *  R  T  N  L  K  P  *  *  C :   W  R  S  K  S  W  R  L  V  V  G  F  L  T  C  H  S  *  V  L  M  I  *  S  P  H  P  E  R  K  I  V  E  R  K  V  G  S  R  D  E  I  Q  D  C  W  I  V  I  V  V  D  A  K  Y  F  H  V  N  N  R  P  F  R  C  *  T  I  Y  T  I  L  V  V  E  L  F  N  P  *  M  V  Y  C  A  L  A  I  K  *  *  N  F  S  A  C  *  V  V  V  L  Y  C  K  C  T  W  K  F  V  *  L  L  D  I  *  V  G  S  F  N  K  Q  V  V  R  K </second_frame>
            <third_frame>   S  Q  F  D  E  H  *  F  G  T  Y  *  N  *  Y  M  K  S  V  D  L  Q  *  S  L  S  F  *  V  F  S  P  T  S  N  S  W  K  *  *  P  S  C  R  N  S  S  W  T  S  F  Q  L  C  T  V  R :   D  S  W  M  I  S  F  F  S  F  R  I  C  K  M  R  A  T  Q  T  L  F  V  K  *  F  H  F  S  L  *  I  Q  K  T  L  S  T  I  *  Q  Q  L  C  E  K  *  T  L  F  I  V  Y  L  *  Q  K  Y  W  I  I  S  L  L  F  G  Q  L  *  S  T  T  G  C  R  F  *  A  S  *  F  P  C  P  P  V  Q  G  *  Q  F  Q  :  H  R  C  T  K  S  K  E  C  L  C  G  F  *  N  L  L  R  R  E  E  H  *  R  :  V  C  A  M  S  A  A  G  E  T  *  I  F  S  C  E  E  Q  T  *  N  L  D  D   : A  G  E  A  N  L  G  G  W  W  *  D  S  *  P  V  I  A  R  C  *  *  F  E  V  H  I  L  R  E  R  *  *  R  E  K  L  A  V  E  M  R  F  K  I  A  G  L  *  *  L  *  M  Q  S  I  S  M  *  I  T  D  L  L  G  V  E  L  F  I  Q  F  *  L  L  N  F  L  T  L  E  W  F  T  V  L  *  P  L  S  S  R  T  F  Q  L  V  K  *  S  Y  Y  I  V  N  A  H  G  S  L  F  D  C  L  I  Y  E  *  V  V  S  I  N  K  L  S  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41408" stop="41203"/>
                    <exon start="40983" stop="40912"/>
                    <exon start="39041" stop="38969"/>
                    <exon start="38427" stop="38377"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSFTFLCRFRKPYQQSDSSSVRNKLFLLFTFNRNIGSLVYYLVNCSQQQVVDFKQVDSHVHQFKGSSSSIGAQRVKNACVAFKTFCEGKNIEGCVQCLQQVKHEYFLVKNKLETLMMLEKQILAAGGRIPDLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="39042" e_stop="38969"/>
            <exon e_start="38427" e_stop="38046"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39042" e_stop="38969" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.993">
            <gDNA_intron_boundary i_start="38968" i_stop="38428" i_length="541"/>
          </intron>
          <exon e_serial="2" e_score="0.976">
            <gDNA_exon_boundary e_start="38427" e_stop="38046" e_length="382"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39042" stop="38969"/>
              <exon start="38427" stop="38046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39004" stop="38969"/>
              <exon start="38427" stop="38046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217277" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATG : CTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAAGTTGGCAGTAGAGATGAGATTCAAGATTGCTGGATTGTAATAGTTGTAGATGCAAAGTATTTCCATGTGAATAACAGACCTTTTAGGTGTTGAACTATTTATACAATTCTAGTTGTTGAACTTTTTAACCCTTGAATGGTTTACTGTGCTTTAGCCATTAAGTAGTAGAACTTTTCAGCTTGTTAAGTAGTCGTATTATATTGTAAATGCACATGGAAGTTTGTTTGACTGCTTGATATATGAGTAGGTAGTTTCAATAAACAAGTTGTCAGAAAA</gDNA_template>
            <first_frame> G  V  C  N  V  C  S  R  *  N  M  N  I  F  L  *  R  T  N  L  K  P  *  *  C :   W  R  S  K  S  W  R  L  V  V  G  F  L  T  C  H  S  *  V  L  M  I  *  S  P  H  P  E  R  K  I  V  E  R  K  V  G  S  R  D  E  I  Q  D  C  W  I  V  I  V  V  D  A  K  Y  F  H  V  N  N  R  P  F  R  C  *  T  I  Y  T  I  L  V  V  E  L  F  N  P  *  M  V  Y  C  A  L  A  I  K  *  *  N  F  S  A  C  *  V  V  V  L  Y  C  K  C  T  W  K  F  V  *  L  L  D  I  *  V  G  S  F  N  K  Q  V  V  R  K </first_frame>
            <second_frame>  V  C  A  M  S  A  A  G  E  T  *  I  F  S  C  E  E  Q  T  *  N  L  D  D   : A  G  E  A  N  L  G  G  W  W  *  D  S  *  P  V  I  A  R  C  *  *  F  E  V  H  I  L  R  E  R  *  *  R  E  K  L  A  V  E  M  R  F  K  I  A  G  L  *  *  L  *  M  Q  S  I  S  M  *  I  T  D  L  L  G  V  E  L  F  I  Q  F  *  L  L  N  F  L  T  L  E  W  F  T  V  L  *  P  L  S  S  R  T  F  Q  L  V  K  *  S  Y  Y  I  V  N  A  H  G  S  L  F  D  C  L  I  Y  E  *  V  V  S  I  N  K  L  S  E   </second_frame>
            <third_frame>   C  V  Q  C  L  Q  Q  V  K  H  E  Y  F  L  V  K  N  K  L  E  T  L  M  M  :  L  E  K  Q  I  L  A  A  G  G  R  I  P  D  L  S  *  L  G  A  N  D  L  K  S  T  S  *  E  K  D  S  R  E  K  S  W  Q  *  R  *  D  S  R  L  L  D  C  N  S  C  R  C  K  V  F  P  C  E  *  Q  T  F  *  V  L  N  Y  L  Y  N  S  S  C  *  T  F  *  P  L  N  G  L  L  C  F  S  H  *  V  V  E  L  F  S  L  L  S  S  R  I  I  L  *  M  H  M  E  V  C  L  T  A  *  Y  M  S  R  *  F  Q  *  T  S  C  Q  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0221G10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="44889" PGL_stop="43984"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44889" e_stop="44788"/>
            <exon e_start="44652" e_stop="43984"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44889" e_stop="44788" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="44787" i_stop="44653" i_length="135"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44652" e_stop="43984" e_length="669"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44889" stop="44788"/>
              <exon start="44652" stop="43984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44889" stop="44788"/>
              <exon start="44652" stop="44006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44888" stop="44788"/>
              <exon start="44652" stop="44232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44800" stop="44788"/>
              <exon start="44652" stop="44368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324994" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAAATATGATCCTTTTGGGCGACAAATTGCTATGTAAAATCAAAATTCTCCATTGAAATTGCTCTCAGGAAATGGCGAAAGATTCACCAAAAACTCCCAAG : TCGAGGTCGGCGACGAATCCATCAGTTGGCGTTTGGGCAGTACAGTGTGAAAAATGCTTGAAATGGAGGAGGATTGCGACACAGGAACAGTTTGAAGATATCAGAAGTAGGTTTACTGAAGAACCCTTTAACTGCCCCAATGGTACTTGTGATGATCCTGCAGACATTGAGTACGATGCTTCTCGAACTTGGGCTATTGACAAGCCCAATCTCCCTAAAACCCCATCTGGCTTTAAGAGAGAATTGTACCTCAGGAGAGATTACTCTAAGATGGATACTTATTATTTCACTCCTTTAGGGAAGAAACTCAGATCCGTTACTGATGTTACTACTTTTCTTGAACAAAATCCCCAGTTATCTGACGTTAAACCCTCAGATTTCAGCTTTACCAGCCCCAAAGTTATGGATGACACCATACCCTCTACCGCTCTTCTTGCCAACTCTCACAAGAAGGGTGTAGCTAGTAGCACTAAATGACTGGATGGATGGAGCTGGACTTGTTCATATGCTTAGTAGATGCACTGTTTAGAGTCTTAAAGGTTCAACTTATTCGCCATGTATTGTTATTTTCCATCTGCAAAATACATTTCAACTGCTCTGTTTACTTTTCATGGTGATGGATTTGGTTGTGACAAAAAGGAAAATTTGTTAGCCTTCTTTACTTTGAGT</gDNA_template>
            <first_frame> V  N  M  I  L  L  G  D  K  L  L  C  K  I  K  I  L  H  *  N  C  S  Q  E  M  A  K  D  S  P  K  T  P  K  :  S  R  S  A  T  N  P  S  V  G  V  W  A  V  Q  C  E  K  C  L  K  W  R  R  I  A  T  Q  E  Q  F  E  D  I  R  S  R  F  T  E  E  P  F  N  C  P  N  G  T  C  D  D  P  A  D  I  E  Y  D  A  S  R  T  W  A  I  D  K  P  N  L  P  K  T  P  S  G  F  K  R  E  L  Y  L  R  R  D  Y  S  K  M  D  T  Y  Y  F  T  P  L  G  K  K  L  R  S  V  T  D  V  T  T  F  L  E  Q  N  P  Q  L  S  D  V  K  P  S  D  F  S  F  T  S  P  K  V  M  D  D  T  I  P  S  T  A  L  L  A  N  S  H  K  K  G  V  A  S  S  T  K  *  L  D  G  W  S  W  T  C  S  Y  A  *  *  M  H  C  L  E  S  *  R  F  N  L  F  A  M  Y  C  Y  F  P  S  A  K  Y  I  S  T  A  L  F  T  F  H  G  D  G  F  G  C  D  K  K  E  N  L  L  A  F  F  T  L  S </first_frame>
            <second_frame>  *  I  *  S  F  W  A  T  N  C  Y  V  K  S  K  F  S  I  E  I  A  L  R  K  W  R  K  I  H  Q  K  L  P  S :   R  G  R  R  R  I  H  Q  L  A  F  G  Q  Y  S  V  K  N  A  *  N  G  G  G  L  R  H  R  N  S  L  K  I  S  E  V  G  L  L  K  N  P  L  T  A  P  M  V  L  V  M  I  L  Q  T  L  S  T  M  L  L  E  L  G  L  L  T  S  P  I  S  L  K  P  H  L  A  L  R  E  N  C  T  S  G  E  I  T  L  R  W  I  L  I  I  S  L  L  *  G  R  N  S  D  P  L  L  M  L  L  L  F  L  N  K  I  P  S  Y  L  T  L  N  P  Q  I  S  A  L  P  A  P  K  L  W  M  T  P  Y  P  L  P  L  F  L  P  T  L  T  R  R  V  *  L  V  A  L  N  D  W  M  D  G  A  G  L  V  H  M  L  S  R  C  T  V  *  S  L  K  G  S  T  Y  S  P  C  I  V  I  F  H  L  Q  N  T  F  Q  L  L  C  L  L  F  M  V  M  D  L  V  V  T  K  R  K  I  C  *  P  S  L  L  *   </second_frame>
            <third_frame>   K  Y  D  P  F  G  R  Q  I  A  M  *  N  Q  N  S  P  L  K  L  L  S  G  N  G  E  R  F  T  K  N  S  Q   : V  E  V  G  D  E  S  I  S  W  R  L  G  S  T  V  *  K  M  L  E  M  E  E  D  C  D  T  G  T  V  *  R  Y  Q  K  *  V  Y  *  R  T  L  *  L  P  Q  W  Y  L  *  *  S  C  R  H  *  V  R  C  F  S  N  L  G  Y  *  Q  A  Q  S  P  *  N  P  I  W  L  *  E  R  I  V  P  Q  E  R  L  L  *  D  G  Y  L  L  F  H  S  F  R  E  E  T  Q  I  R  Y  *  C  Y  Y  F  S  *  T  K  S  P  V  I  *  R  *  T  L  R  F  Q  L  Y  Q  P  Q  S  Y  G  *  H  H  T  L  Y  R  S  S  C  Q  L  S  Q  E  G  C  S  *  *  H  *  M  T  G  W  M  E  L  D  L  F  I  C  L  V  D  A  L  F  R  V  L  K  V  Q  L  I  R  H  V  L  L  F  S  I  C  K  I  H  F  N  C  S  V  Y  F  S  W  *  W  I  W  L  *  Q  K  G  K  F  V  S  L  L  Y  F  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44832" stop="44788"/>
                    <exon start="44652" stop="44176"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NCSQEMAKDSPKTPKSRSATNPSVGVWAVQCEKCLKWRRIATQEQFEDIRSRFTEEPFNCPNGTCDDPADIEYDASRTWAIDKPNLPKTPSGFKRELYLRRDYSKMDTYYFTPLGKKLRSVTDVTTFLEQNPQLSDVKPSDFSFTSPKVMDDTIPSTALLANSHKKGVASSTK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="60141" PGL_stop="59330"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60141" e_stop="59548"/>
            <exon e_start="59449" e_stop="59330"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.722" e_score="0.921"/>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="60141" e_stop="59548" e_length="594"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.722">
            <gDNA_intron_boundary i_start="59547" i_stop="59450" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="0.900">
            <gDNA_exon_boundary e_start="59449" e_stop="59330" e_length="120"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60141" stop="59548"/>
              <exon start="59449" stop="59330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315124" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACGTCGCGACAACTCGAAAAATAATTAATTGATTCAATTTTAACAAAATTAAAAAATAAACGAGTTTTAAAAAAGAGTCGCCACCTAATTTTTTAGGAAAACTAGGAAACCAATTATTAATCTACGAAACCAAATTGATTCTTAGGTAAGGGGTTCAAGTTATTCCGAAGGGAAGGGGTTAGGCACCCTTCGGAATCCACAAATGTGGTTCCCGACTGAATTCATTTTTTTTTCAAATTGAGGAAAGATATAAAATAAACACATATAATAAACACACAATATACACAATAAAGCAATAATTATCGGCCTAAAGTTTGTCTAACGTCAATATTCACAAAATAATGAATGAAATACAATTCGAACTTTTCGAATAATTTCAATGAGAAGCACCTCCGGGTACCTGTAAAGACACTTAGTAAAAGAGTTATTGTCAAAATAATATAAATAAAAATAAATAACTCAAATAATAACTAAAATAAAAATCCGTCTTATTAACATGGGAGGCCTTGGAAATCGACGGTTATTTCTTCATCGGCCACTTTCAACATATAAAATATATAAACTTGAATTGAAATTCCGTCCTTTTAAAATG : GGAAGACCTCTAAACCCGACGGATAGATTTTTCATCGGCCTTTCAACATATAAAATATATAAACTTGAATTAAAATTCCGTCTTTTTAAAATGGGGAGGCCTCTAAGCCCGACGGATAGA</gDNA_template>
            <first_frame> K  R  R  D  N  S  K  N  N  *  L  I  Q  F  *  Q  N  *  K  I  N  E  F  *  K  R  V  A  T  *  F  F  R  K  T  R  K  P  I  I  N  L  R  N  Q  I  D  S  *  V  R  G  S  S  Y  S  E  G  K  G  L  G  T  L  R  N  P  Q  M  W  F  P  T  E  F  I  F  F  S  N  *  G  K  I  *  N  K  H  I  *  *  T  H  N  I  H  N  K  A  I  I  I  G  L  K  F  V  *  R  Q  Y  S  Q  N  N  E  *  N  T  I  R  T  F  R  I  I  S  M  R  S  T  S  G  Y  L  *  R  H  L  V  K  E  L  L  S  K  *  Y  K  *  K  *  I  T  Q  I  I  T  K  I  K  I  R  L  I  N  M  G  G  L  G  N  R  R  L  F  L  H  R  P  L  S  T  Y  K  I  Y  K  L  E  L  K  F  R  P  F  K  M  :  G  R  P  L  N  P  T  D  R  F  F  I  G  L  S  T  Y  K  I  Y  K  L  E  L  K  F  R  L  F  K  M  G  R  P  L  S  P  T  D  R </first_frame>
            <second_frame>  N  V  A  T  T  R  K  I  I  N  *  F  N  F  N  K  I  K  K  *  T  S  F  K  K  E  S  P  P  N  F  L  G  K  L  G  N  Q  L  L  I  Y  E  T  K  L  I  L  R  *  G  V  Q  V  I  P  K  G  R  G  *  A  P  F  G  I  H  K  C  G  S  R  L  N  S  F  F  F  Q  I  E  E  R  Y  K  I  N  T  Y  N  K  H  T  I  Y  T  I  K  Q  *  L  S  A  *  S  L  S  N  V  N  I  H  K  I  M  N  E  I  Q  F  E  L  F  E  *  F  Q  *  E  A  P  P  G  T  C  K  D  T  *  *  K  S  Y  C  Q  N  N  I  N  K  N  K  *  L  K  *  *  L  K  *  K  S  V  L  L  T  W  E  A  L  E  I  D  G  Y  F  F  I  G  H  F  Q  H  I  K  Y  I  N  L  N  *  N  S  V  L  L  K  W :   E  D  L  *  T  R  R  I  D  F  S  S  A  F  Q  H  I  K  Y  I  N  L  N  *  N  S  V  F  L  K  W  G  G  L  *  A  R  R  I   </second_frame>
            <third_frame>   T  S  R  Q  L  E  K  *  L  I  D  S  I  L  T  K  L  K  N  K  R  V  L  K  K  S  R  H  L  I  F  *  E  N  *  E  T  N  Y  *  S  T  K  P  N  *  F  L  G  K  G  F  K  L  F  R  R  E  G  V  R  H  P  S  E  S  T  N  V  V  P  D  *  I  H  F  F  F  K  L  R  K  D  I  K  *  T  H  I  I  N  T  Q  Y  T  Q  *  S  N  N  Y  R  P  K  V  C  L  T  S  I  F  T  K  *  *  M  K  Y  N  S  N  F  S  N  N  F  N  E  K  H  L  R  V  P  V  K  T  L  S  K  R  V  I  V  K  I  I  *  I  K  I  N  N  S  N  N  N  *  N  K  N  P  S  Y  *  H  G  R  P  W  K  S  T  V  I  S  S  S  A  T  F  N  I  *  N  I  *  T  *  I  E  I  P  S  F  *  N   : G  K  T  S  K  P  D  G  *  I  F  H  R  P  F  N  I  *  N  I  *  T  *  I  K  I  P  S  F  *  N  G  E  A  S  K  P  D  G  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59685" stop="59548"/>
                    <exon start="59449" stop="59330"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITQIITKIKIRLINMGGLGNRRLFLHRPLSTYKIYKLELKFRPFKMGRPLNPTDRFFIGLSTYKIYKLELKFRLFKMGRPLSPTDR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="68929" PGL_stop="79156"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70882" e_stop="70984"/>
            <exon e_start="71061" e_stop="71185"/>
            <exon e_start="71293" e_stop="71482"/>
            <exon e_start="73140" e_stop="73562"/>
            <exon e_start="74671" e_stop="74920"/>
            <exon e_start="76798" e_stop="76889"/>
            <exon e_start="77832" e_stop="78204"/>
            <exon e_start="78480" e_stop="78486"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.184" acc_prob="0.908" e_score="0.961"/>
          <exon-intron don_prob="0.857" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.801" e_score="1.000"/>
          <exon-intron don_prob="0.779" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.491" e_score="0.989"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="70882" e_stop="70984" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.184" acc_prob="0.908">
            <gDNA_intron_boundary i_start="70985" i_stop="71060" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71061" e_stop="71185" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.857" acc_prob="0.968">
            <gDNA_intron_boundary i_start="71186" i_stop="71292" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71293" e_stop="71482" e_length="190"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="71483" i_stop="73139" i_length="1657"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73140" e_stop="73562" e_length="423"/>
          </exon>
          <intron i_serial="4" don_prob="0.887" acc_prob="0.996">
            <gDNA_intron_boundary i_start="73563" i_stop="74670" i_length="1108"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="74671" e_stop="74920" e_length="250"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.801">
            <gDNA_intron_boundary i_start="74921" i_stop="76797" i_length="1877"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="76798" e_stop="76889" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.779" acc_prob="0.998">
            <gDNA_intron_boundary i_start="76890" i_stop="77831" i_length="942"/>
          </intron>
          <exon e_serial="7" e_score="0.989">
            <gDNA_exon_boundary e_start="77832" e_stop="78204" e_length="373"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.491">
            <gDNA_intron_boundary i_start="78205" i_stop="78479" i_length="275"/>
          </intron>
          <exon e_serial="8" e_score="0.714">
            <gDNA_exon_boundary e_start="78480" e_stop="78486" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70882" stop="70984"/>
              <exon start="71061" stop="71185"/>
              <exon start="71293" stop="71482"/>
              <exon start="73140" stop="73156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73145" stop="73562"/>
              <exon start="74671" stop="74920"/>
              <exon start="76798" stop="76877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73145" stop="73562"/>
              <exon start="74671" stop="74873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73148" stop="73562"/>
              <exon start="74671" stop="74779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73160" stop="73562"/>
              <exon start="74671" stop="74920"/>
              <exon start="76798" stop="76889"/>
              <exon start="77832" stop="77917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73196" stop="73562"/>
              <exon start="74671" stop="74920"/>
              <exon start="76798" stop="76889"/>
              <exon start="77832" stop="77925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73196" stop="73398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73198" stop="73562"/>
              <exon start="74671" stop="74920"/>
              <exon start="76798" stop="76889"/>
              <exon start="77832" stop="77936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76861" stop="76889"/>
              <exon start="77832" stop="78204"/>
              <exon start="78480" stop="78486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77859" stop="78204"/>
              <exon start="78480" stop="78486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234468" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTGTTGATGTTAATATGGGTGTTGCAAAGGATCTTCTAAGGGTTGCTGATCAATATCTTCTTGAGGGCCTTAAGCGTCTGTGCGAGTATGCAATTGCCCAG : GATATCTCAGTGGAAAATGTCTCTCTGATGTTTGAGTTATCAGAGGCTTTCAATGCATTGTCATTAAGAAATGCTTGCATTGTATTCACATTGGAGAAGTTCGACAAATTAAGTGTCATGCCATG : GTATTCGCAATTGATTCAACTTATATTACCTGAGACACGTGCGTACTTTGCTAGGGTGCTGAGCAGGCCAATTCAAGCTGACCTCTGATTTAGGTTCATTTTTATTCTTTGATTAGATGTAGTATATGATGTAAATTGTACAGGAAGTGGGTTTTATTCCACTCGTCTCTAATTGCAAGAGTTATGTGTC : TAAATAAAAAATAAAAAATGGCTTCTCTTCGTTTTCCATTCTTGTTTCCTCAGCCCCACAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATAACTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCCTTTGTGGGGTTCTGTTTCTCTAGCAGATAACTCAGCTCCGGTCACTGAATCGAGGACCGGAATGGCATTCCCCTCAATTCTGAAAGATACTCAGCGACTCCTTGGAATTGGGCTGCGTAAAAAGGCGGTTTTTGGATTGAAAAACATTGATGTCTATGCTTATG : GTGTGTATGCTGATGATGTTGATGTAAAGAGGTATCTGGCTGAGAAGCATGGACGGCGCTCTGTTTCTGAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGAAAACAATATACGCATGACTATCAGGCTTCAAATAGTCTATGGCAGGCTAAGCATTAATTCTGTGCGCAGTGCTTTCGAAGAATCTGTTGGCAGCAGATTACATAAGTTTGGGGGATGTGATAATAAGGAATTGCTTCAAAG : GTTCACTTCCCAGTTTAAGGATGAAATTAAATTACCTCGGGGATCTATCATTGAACTCTCCAGAGATCATGACTACATACTCCACACAACAA : TTGATGGAAAGGAAGTGGGAAGCATACAAAGCAAACTCTTATGCAGATCAATCCTAGACCTATATATTGGTGATGAGTCATTTGATCACAAAGCCAATGAAGATGTCGAGTCGAACTTGGCTTCTCTACTTCACAAGTAGCTACTTCTTTAGCATAAAGAGAATTTTATCAACACGAGGAATCAAGTTGTGGTGATTTATACTTAACGCATGTTAGCTTCTATTGGTTGGATGATTCTCTTTAAATAGTTGAACTAGAGAATTAATCTCTTGCAAACTGAACTTAGATCTATGTTTTATATGCTGATGAGTGGTTTTCTCTACTCCTGTAATATTTTGCTTTGCAATTTTTATAGCATGATTGAAATAAGTAT : GAAACAA</gDNA_template>
            <first_frame> I  C  *  C  *  Y  G  C  C  K  G  S  S  K  G  C  *  S  I  S  S  *  G  P  *  A  S  V  R  V  C  N  C  P   : G  Y  L  S  G  K  C  L  S  D  V  *  V  I  R  G  F  Q  C  I  V  I  K  K  C  L  H  C  I  H  I  G  E  V  R  Q  I  K  C  H  A  M  :  V  F  A  I  D  S  T  Y  I  T  *  D  T  C  V  L  C  *  G  A  E  Q  A  N  S  S  *  P  L  I  *  V  H  F  Y  S  L  I  R  C  S  I  *  C  K  L  Y  R  K  W  V  L  F  H  S  S  L  I  A  R  V  M  C   : L  N  K  K  *  K  M  A  S  L  R  F  P  F  L  F  P  Q  P  H  K  T  P  S  S  A  T  S  D  A  P  S  R  S  F  S  T  V  A  V  A  V  A  S  G  G  S  A  L  A  A  A  G  A  I  I  A  I  T  Q  S  P  K  N  P  F  L  E  N  A  M  N  F  L  L  S  N  F  S  P  N  K  N  H  S  S  P  L  W  G  S  V  S  L  A  D  N  S  A  P  V  T  E  S  R  T  G  M  A  F  P  S  I  L  K  D  T  Q  R  L  L  G  I  G  L  R  K  K  A  V  F  G  L  K  N  I  D  V  Y  A  Y   : G  V  Y  A  D  D  V  D  V  K  R  Y  L  A  E  K  H  G  R  R  S  V  S  E  L  Q  Q  K  E  E  L  R  N  H  L  M  E  N  N  I  R  M  T  I  R  L  Q  I  V  Y  G  R  L  S  I  N  S  V  R  S  A  F  E  E  S  V  G  S  R  L  H  K  F  G  G  C  D  N  K  E  L  L  Q  R :   F  T  S  Q  F  K  D  E  I  K  L  P  R  G  S  I  I  E  L  S  R  D  H  D  Y  I  L  H  T  T   : I  D  G  K  E  V  G  S  I  Q  S  K  L  L  C  R  S  I  L  D  L  Y  I  G  D  E  S  F  D  H  K  A  N  E  D  V  E  S  N  L  A  S  L  L  H  K  *  L  L  L  *  H  K  E  N  F  I  N  T  R  N  Q  V  V  V  I  Y  T  *  R  M  L  A  S  I  G  W  M  I  L  F  K  *  L  N  *  R  I  N  L  L  Q  T  E  L  R  S  M  F  Y  M  L  M  S  G  F  L  Y  S  C  N  I  L  L  C  N  F  Y  S  M  I  E  I  S  M :   K  Q </first_frame>
            <second_frame>  S  V  D  V  N  M  G  V  A  K  D  L  L  R  V  A  D  Q  Y  L  L  E  G  L  K  R  L  C  E  Y  A  I  A  Q  :  D  I  S  V  E  N  V  S  L  M  F  E  L  S  E  A  F  N  A  L  S  L  R  N  A  C  I  V  F  T  L  E  K  F  D  K  L  S  V  M  P  W :   Y  S  Q  L  I  Q  L  I  L  P  E  T  R  A  Y  F  A  R  V  L  S  R  P  I  Q  A  D  L  *  F  R  F  I  F  I  L  *  L  D  V  V  Y  D  V  N  C  T  G  S  G  F  Y  S  T  R  L  *  L  Q  E  L  C  V  :  *  I  K  N  K  K  W  L  L  F  V  F  H  S  C  F  L  S  P  T  R  L  R  L  P  P  L  Q  M  L  H  L  A  P  S  P  P  S  L  S  P  S  R  P  E  V  Q  P  S  L  P  P  E  R  S  L  P  *  L  K  A  P  K  I  R  F  W  K  M  L  *  I  F  Y  F  P  I  S  H  L  T  K  I  I  H  P  L  C  G  V  L  F  L  *  Q  I  T  Q  L  R  S  L  N  R  G  P  E  W  H  S  P  Q  F  *  K  I  L  S  D  S  L  E  L  G  C  V  K  R  R  F  L  D  *  K  T  L  M  S  M  L  M  :  V  C  M  L  M  M  L  M  *  R  G  I  W  L  R  S  M  D  G  A  L  F  L  N  C  S  K  R  K  S  *  E  I  I  S  W  K  T  I  Y  A  *  L  S  G  F  K  *  S  M  A  G  *  A  L  I  L  C  A  V  L  S  K  N  L  L  A  A  D  Y  I  S  L  G  D  V  I  I  R  N  C  F  K   : G  S  L  P  S  L  R  M  K  L  N  Y  L  G  D  L  S  L  N  S  P  E  I  M  T  T  Y  S  T  Q  Q  :  L  M  E  R  K  W  E  A  Y  K  A  N  S  Y  A  D  Q  S  *  T  Y  I  L  V  M  S  H  L  I  T  K  P  M  K  M  S  S  R  T  W  L  L  Y  F  T  S  S  Y  F  F  S  I  K  R  I  L  S  T  R  G  I  K  L  W  *  F  I  L  N  A  C  *  L  L  L  V  G  *  F  S  L  N  S  *  T  R  E  L  I  S  C  K  L  N  L  D  L  C  F  I  C  *  *  V  V  F  S  T  P  V  I  F  C  F  A  I  F  I  A  *  L  K  *  V   : *  N   </second_frame>
            <third_frame>   L  L  M  L  I  W  V  L  Q  R  I  F  *  G  L  L  I  N  I  F  L  R  A  L  S  V  C  A  S  M  Q  L  P  R :   I  S  Q  W  K  M  S  L  *  C  L  S  Y  Q  R  L  S  M  H  C  H  *  E  M  L  A  L  Y  S  H  W  R  S  S  T  N  *  V  S  C  H   : G  I  R  N  *  F  N  L  Y  Y  L  R  H  V  R  T  L  L  G  C  *  A  G  Q  F  K  L  T  S  D  L  G  S  F  L  F  F  D  *  M  *  Y  M  M  *  I  V  Q  E  V  G  F  I  P  L  V  S  N  C  K  S  Y  V  S :   K  *  K  I  K  N  G  F  S  S  F  S  I  L  V  S  S  A  P  Q  D  S  V  F  R  H  F  R  C  S  I  S  L  L  L  H  R  R  C  R  R  R  V  R  R  F  S  P  R  C  R  R  S  D  H  C  H  N  S  K  P  Q  K  S  V  S  G  K  C  Y  E  F  S  T  F  Q  F  L  T  *  Q  K  S  F  I  P  F  V  G  F  C  F  S  S  R  *  L  S  S  G  H  *  I  E  D  R  N  G  I  P  L  N  S  E  R  Y  S  A  T  P  W  N  W  A  A  *  K  G  G  F  W  I  E  K  H  *  C  L  C  L  W :   C  V  C  *  *  C  *  C  K  E  V  S  G  *  E  A  W  T  A  L  C  F  *  T  A  A  K  G  R  V  E  K  S  S  H  G  K  Q  Y  T  H  D  Y  Q  A  S  N  S  L  W  Q  A  K  H  *  F  C  A  Q  C  F  R  R  I  C  W  Q  Q  I  T  *  V  W  G  M  *  *  *  G  I  A  S  K  :  V  H  F  P  V  *  G  *  N  *  I  T  S  G  I  Y  H  *  T  L  Q  R  S  *  L  H  T  P  H  N  N :   *  W  K  G  S  G  K  H  T  K  Q  T  L  M  Q  I  N  P  R  P  I  Y  W  *  *  V  I  *  S  Q  S  Q  *  R  C  R  V  E  L  G  F  S  T  S  Q  V  A  T  S  L  A  *  R  E  F  Y  Q  H  E  E  S  S  C  G  D  L  Y  L  T  H  V  S  F  Y  W  L  D  D  S  L  *  I  V  E  L  E  N  *  S  L  A  N  *  T  *  I  Y  V  L  Y  A  D  E  W  F  S  L  L  L  *  Y  F  A  L  Q  F  L  *  H  D  *  N  K  Y  :  E  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73154" stop="73562"/>
                    <exon start="74671" stop="74920"/>
                    <exon start="76798" stop="76889"/>
                    <exon start="77832" stop="77971"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>888</number_coding_nucleotides>
                  <number_encoded_amino_acids>296</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMASLRFPFLFPQPHKTPSSATSDAPSRSFSTVAVAVASGGSALAAAGAIIAITQSPKNPFLENAMNFLLSNFSPNKNHSSPLWGSVSLADNSAPVTESRTGMAFPSILKDTQRLLGIGLRKKAVFGLKNIDVYAYGVYADDVDVKRYLAEKHGRRSVSELQQKEELRNHLMENNIRMTIRLQIVYGRLSINSVRSAFEESVGSRLHKFGGCDNKELLQRFTSQFKDEIKLPRGSIIELSRDHDYILHTTIDGKEVGSIQSKLLCRSILDLYIGDESFDHKANEDVESNLASLLHK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70883" stop="70984"/>
                    <exon start="71061" stop="71185"/>
                    <exon start="71293" stop="71380"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVDVNMGVAKDLLRVADQYLLEGLKRLCEYAIAQDISVENVSLMFELSEAFNALSLRNACIVFTLEKFDKLSVMPWYSQLIQLILPETRAYFARVLSRPIQADL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="73123" e_stop="73562"/>
            <exon e_start="74671" e_stop="74920"/>
            <exon e_start="76798" e_stop="76889"/>
            <exon e_start="77832" e_stop="78204"/>
            <exon e_start="78480" e_stop="78486"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.887" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.801" e_score="1.000"/>
          <exon-intron don_prob="0.779" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.491" e_score="0.989"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73123" e_stop="73562" e_length="440"/>
          </exon>
          <intron i_serial="1" don_prob="0.887" acc_prob="0.996">
            <gDNA_intron_boundary i_start="73563" i_stop="74670" i_length="1108"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74671" e_stop="74920" e_length="250"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.801">
            <gDNA_intron_boundary i_start="74921" i_stop="76797" i_length="1877"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76798" e_stop="76889" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.779" acc_prob="0.998">
            <gDNA_intron_boundary i_start="76890" i_stop="77831" i_length="942"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="77832" e_stop="78204" e_length="373"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.491">
            <gDNA_intron_boundary i_start="78205" i_stop="78479" i_length="275"/>
          </intron>
          <exon e_serial="5" e_score="0.714">
            <gDNA_exon_boundary e_start="78480" e_stop="78486" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73123" stop="73562"/>
              <exon start="74671" stop="74920"/>
              <exon start="76798" stop="76889"/>
              <exon start="77832" stop="78173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73145" stop="73562"/>
              <exon start="74671" stop="74920"/>
              <exon start="76798" stop="76877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73145" stop="73562"/>
              <exon start="74671" stop="74873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73148" stop="73562"/>
              <exon start="74671" stop="74779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73160" stop="73562"/>
              <exon start="74671" stop="74920"/>
              <exon start="76798" stop="76889"/>
              <exon start="77832" stop="77917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73196" stop="73562"/>
              <exon start="74671" stop="74920"/>
              <exon start="76798" stop="76889"/>
              <exon start="77832" stop="77925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73196" stop="73398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73198" stop="73562"/>
              <exon start="74671" stop="74920"/>
              <exon start="76798" stop="76889"/>
              <exon start="77832" stop="77936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76861" stop="76889"/>
              <exon start="77832" stop="78204"/>
              <exon start="78480" stop="78486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77859" stop="78204"/>
              <exon start="78480" stop="78486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234468" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATACGCTCAAACCATAGTAAATAAAAAATAAAAAATGGCTTCTCTTCGTTTTCCATTCTTGTTTCCTCAGCCCCACAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATAACTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCCTTTGTGGGGTTCTGTTTCTCTAGCAGATAACTCAGCTCCGGTCACTGAATCGAGGACCGGAATGGCATTCCCCTCAATTCTGAAAGATACTCAGCGACTCCTTGGAATTGGGCTGCGTAAAAAGGCGGTTTTTGGATTGAAAAACATTGATGTCTATGCTTATG : GTGTGTATGCTGATGATGTTGATGTAAAGAGGTATCTGGCTGAGAAGCATGGACGGCGCTCTGTTTCTGAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGAAAACAATATACGCATGACTATCAGGCTTCAAATAGTCTATGGCAGGCTAAGCATTAATTCTGTGCGCAGTGCTTTCGAAGAATCTGTTGGCAGCAGATTACATAAGTTTGGGGGATGTGATAATAAGGAATTGCTTCAAAG : GTTCACTTCCCAGTTTAAGGATGAAATTAAATTACCTCGGGGATCTATCATTGAACTCTCCAGAGATCATGACTACATACTCCACACAACAA : TTGATGGAAAGGAAGTGGGAAGCATACAAAGCAAACTCTTATGCAGATCAATCCTAGACCTATATATTGGTGATGAGTCATTTGATCACAAAGCCAATGAAGATGTCGAGTCGAACTTGGCTTCTCTACTTCACAAGTAGCTACTTCTTTAGCATAAAGAGAATTTTATCAACACGAGGAATCAAGTTGTGGTGATTTATACTTAACGCATGTTAGCTTCTATTGGTTGGATGATTCTCTTTAAATAGTTGAACTAGAGAATTAATCTCTTGCAAACTGAACTTAGATCTATGTTTTATATGCTGATGAGTGGTTTTCTCTACTCCTGTAATATTTTGCTTTGCAATTTTTATAGCATGATTGAAATAAGTAT : GAAACAA</gDNA_template>
            <first_frame> I  R  S  N  H  S  K  *  K  I  K  N  G  F  S  S  F  S  I  L  V  S  S  A  P  Q  D  S  V  F  R  H  F  R  C  S  I  S  L  L  L  H  R  R  C  R  R  R  V  R  R  F  S  P  R  C  R  R  S  D  H  C  H  N  S  K  P  Q  K  S  V  S  G  K  C  Y  E  F  S  T  F  Q  F  L  T  *  Q  K  S  F  I  P  F  V  G  F  C  F  S  S  R  *  L  S  S  G  H  *  I  E  D  R  N  G  I  P  L  N  S  E  R  Y  S  A  T  P  W  N  W  A  A  *  K  G  G  F  W  I  E  K  H  *  C  L  C  L  W :   C  V  C  *  *  C  *  C  K  E  V  S  G  *  E  A  W  T  A  L  C  F  *  T  A  A  K  G  R  V  E  K  S  S  H  G  K  Q  Y  T  H  D  Y  Q  A  S  N  S  L  W  Q  A  K  H  *  F  C  A  Q  C  F  R  R  I  C  W  Q  Q  I  T  *  V  W  G  M  *  *  *  G  I  A  S  K  :  V  H  F  P  V  *  G  *  N  *  I  T  S  G  I  Y  H  *  T  L  Q  R  S  *  L  H  T  P  H  N  N :   *  W  K  G  S  G  K  H  T  K  Q  T  L  M  Q  I  N  P  R  P  I  Y  W  *  *  V  I  *  S  Q  S  Q  *  R  C  R  V  E  L  G  F  S  T  S  Q  V  A  T  S  L  A  *  R  E  F  Y  Q  H  E  E  S  S  C  G  D  L  Y  L  T  H  V  S  F  Y  W  L  D  D  S  L  *  I  V  E  L  E  N  *  S  L  A  N  *  T  *  I  Y  V  L  Y  A  D  E  W  F  S  L  L  L  *  Y  F  A  L  Q  F  L  *  H  D  *  N  K  Y  :  E  T  </first_frame>
            <second_frame>  Y  A  Q  T  I  V  N  K  K  *  K  M  A  S  L  R  F  P  F  L  F  P  Q  P  H  K  T  P  S  S  A  T  S  D  A  P  S  R  S  F  S  T  V  A  V  A  V  A  S  G  G  S  A  L  A  A  A  G  A  I  I  A  I  T  Q  S  P  K  N  P  F  L  E  N  A  M  N  F  L  L  S  N  F  S  P  N  K  N  H  S  S  P  L  W  G  S  V  S  L  A  D  N  S  A  P  V  T  E  S  R  T  G  M  A  F  P  S  I  L  K  D  T  Q  R  L  L  G  I  G  L  R  K  K  A  V  F  G  L  K  N  I  D  V  Y  A  Y   : G  V  Y  A  D  D  V  D  V  K  R  Y  L  A  E  K  H  G  R  R  S  V  S  E  L  Q  Q  K  E  E  L  R  N  H  L  M  E  N  N  I  R  M  T  I  R  L  Q  I  V  Y  G  R  L  S  I  N  S  V  R  S  A  F  E  E  S  V  G  S  R  L  H  K  F  G  G  C  D  N  K  E  L  L  Q  R :   F  T  S  Q  F  K  D  E  I  K  L  P  R  G  S  I  I  E  L  S  R  D  H  D  Y  I  L  H  T  T   : I  D  G  K  E  V  G  S  I  Q  S  K  L  L  C  R  S  I  L  D  L  Y  I  G  D  E  S  F  D  H  K  A  N  E  D  V  E  S  N  L  A  S  L  L  H  K  *  L  L  L  *  H  K  E  N  F  I  N  T  R  N  Q  V  V  V  I  Y  T  *  R  M  L  A  S  I  G  W  M  I  L  F  K  *  L  N  *  R  I  N  L  L  Q  T  E  L  R  S  M  F  Y  M  L  M  S  G  F  L  Y  S  C  N  I  L  L  C  N  F  Y  S  M  I  E  I  S  M :   K  Q </second_frame>
            <third_frame>   T  L  K  P  *  *  I  K  N  K  K  W  L  L  F  V  F  H  S  C  F  L  S  P  T  R  L  R  L  P  P  L  Q  M  L  H  L  A  P  S  P  P  S  L  S  P  S  R  P  E  V  Q  P  S  L  P  P  E  R  S  L  P  *  L  K  A  P  K  I  R  F  W  K  M  L  *  I  F  Y  F  P  I  S  H  L  T  K  I  I  H  P  L  C  G  V  L  F  L  *  Q  I  T  Q  L  R  S  L  N  R  G  P  E  W  H  S  P  Q  F  *  K  I  L  S  D  S  L  E  L  G  C  V  K  R  R  F  L  D  *  K  T  L  M  S  M  L  M  :  V  C  M  L  M  M  L  M  *  R  G  I  W  L  R  S  M  D  G  A  L  F  L  N  C  S  K  R  K  S  *  E  I  I  S  W  K  T  I  Y  A  *  L  S  G  F  K  *  S  M  A  G  *  A  L  I  L  C  A  V  L  S  K  N  L  L  A  A  D  Y  I  S  L  G  D  V  I  I  R  N  C  F  K   : G  S  L  P  S  L  R  M  K  L  N  Y  L  G  D  L  S  L  N  S  P  E  I  M  T  T  Y  S  T  Q  Q  :  L  M  E  R  K  W  E  A  Y  K  A  N  S  Y  A  D  Q  S  *  T  Y  I  L  V  M  S  H  L  I  T  K  P  M  K  M  S  S  R  T  W  L  L  Y  F  T  S  S  Y  F  F  S  I  K  R  I  L  S  T  R  G  I  K  L  W  *  F  I  L  N  A  C  *  L  L  L  V  G  *  F  S  L  N  S  *  T  R  E  L  I  S  C  K  L  N  L  D  L  C  F  I  C  *  *  V  V  F  S  T  P  V  I  F  C  F  A  I  F  I  A  *  L  K  *  V   : *  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73154" stop="73562"/>
                    <exon start="74671" stop="74920"/>
                    <exon start="76798" stop="76889"/>
                    <exon start="77832" stop="77971"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>888</number_coding_nucleotides>
                  <number_encoded_amino_acids>296</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMASLRFPFLFPQPHKTPSSATSDAPSRSFSTVAVAVASGGSALAAAGAIIAITQSPKNPFLENAMNFLLSNFSPNKNHSSPLWGSVSLADNSAPVTESRTGMAFPSILKDTQRLLGIGLRKKAVFGLKNIDVYAYGVYADDVDVKRYLAEKHGRRSVSELQQKEELRNHLMENNIRMTIRLQIVYGRLSINSVRSAFEESVGSRLHKFGGCDNKELLQRFTSQFKDEIKLPRGSIIELSRDHDYILHTTIDGKEVGSIQSKLLCRSILDLYIGDESFDHKANEDVESNLASLLHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="70882" e_stop="70984"/>
            <exon e_start="71061" e_stop="71185"/>
            <exon e_start="71293" e_stop="71482"/>
            <exon e_start="73140" e_stop="73562"/>
            <exon e_start="74671" e_stop="74920"/>
            <exon e_start="76798" e_stop="76889"/>
            <exon e_start="77832" e_stop="78272"/>
            <exon e_start="79111" e_stop="79156"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.184" acc_prob="0.908" e_score="0.961"/>
          <exon-intron don_prob="0.857" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.801" e_score="1.000"/>
          <exon-intron don_prob="0.779" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.834" acc_prob="0.000" e_score="0.975"/>
          <exon-only e_score="0.565"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="70882" e_stop="70984" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.184" acc_prob="0.908">
            <gDNA_intron_boundary i_start="70985" i_stop="71060" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71061" e_stop="71185" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.857" acc_prob="0.968">
            <gDNA_intron_boundary i_start="71186" i_stop="71292" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71293" e_stop="71482" e_length="190"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="71483" i_stop="73139" i_length="1657"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73140" e_stop="73562" e_length="423"/>
          </exon>
          <intron i_serial="4" don_prob="0.887" acc_prob="0.996">
            <gDNA_intron_boundary i_start="73563" i_stop="74670" i_length="1108"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="74671" e_stop="74920" e_length="250"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.801">
            <gDNA_intron_boundary i_start="74921" i_stop="76797" i_length="1877"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="76798" e_stop="76889" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.779" acc_prob="0.998">
            <gDNA_intron_boundary i_start="76890" i_stop="77831" i_length="942"/>
          </intron>
          <exon e_serial="7" e_score="0.975">
            <gDNA_exon_boundary e_start="77832" e_stop="78272" e_length="441"/>
          </exon>
          <intron i_serial="7" don_prob="0.834" acc_prob="0.000">
            <gDNA_intron_boundary i_start="78273" i_stop="79110" i_length="838"/>
          </intron>
          <exon e_serial="8" e_score="0.565">
            <gDNA_exon_boundary e_start="79111" e_stop="79156" e_length="46"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70882" stop="70984"/>
              <exon start="71061" stop="71185"/>
              <exon start="71293" stop="71482"/>
              <exon start="73140" stop="73156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73145" stop="73562"/>
              <exon start="74671" stop="74920"/>
              <exon start="76798" stop="76877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73145" stop="73562"/>
              <exon start="74671" stop="74873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73148" stop="73562"/>
              <exon start="74671" stop="74779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73160" stop="73562"/>
              <exon start="74671" stop="74920"/>
              <exon start="76798" stop="76889"/>
              <exon start="77832" stop="77917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73196" stop="73562"/>
              <exon start="74671" stop="74920"/>
              <exon start="76798" stop="76889"/>
              <exon start="77832" stop="77925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73196" stop="73398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73198" stop="73562"/>
              <exon start="74671" stop="74920"/>
              <exon start="76798" stop="76889"/>
              <exon start="77832" stop="77936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74739" stop="74920"/>
              <exon start="76798" stop="76889"/>
              <exon start="77832" stop="78272"/>
              <exon start="79111" stop="79156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540739" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTGTTGATGTTAATATGGGTGTTGCAAAGGATCTTCTAAGGGTTGCTGATCAATATCTTCTTGAGGGCCTTAAGCGTCTGTGCGAGTATGCAATTGCCCAG : GATATCTCAGTGGAAAATGTCTCTCTGATGTTTGAGTTATCAGAGGCTTTCAATGCATTGTCATTAAGAAATGCTTGCATTGTATTCACATTGGAGAAGTTCGACAAATTAAGTGTCATGCCATG : GTATTCGCAATTGATTCAACTTATATTACCTGAGACACGTGCGTACTTTGCTAGGGTGCTGAGCAGGCCAATTCAAGCTGACCTCTGATTTAGGTTCATTTTTATTCTTTGATTAGATGTAGTATATGATGTAAATTGTACAGGAAGTGGGTTTTATTCCACTCGTCTCTAATTGCAAGAGTTATGTGTC : TAAATAAAAAATAAAAAATGGCTTCTCTTCGTTTTCCATTCTTGTTTCCTCAGCCCCACAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATAACTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCCTTTGTGGGGTTCTGTTTCTCTAGCAGATAACTCAGCTCCGGTCACTGAATCGAGGACCGGAATGGCATTCCCCTCAATTCTGAAAGATACTCAGCGACTCCTTGGAATTGGGCTGCGTAAAAAGGCGGTTTTTGGATTGAAAAACATTGATGTCTATGCTTATG : GTGTGTATGCTGATGATGTTGATGTAAAGAGGTATCTGGCTGAGAAGCATGGACGGCGCTCTGTTTCTGAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGAAAACAATATACGCATGACTATCAGGCTTCAAATAGTCTATGGCAGGCTAAGCATTAATTCTGTGCGCAGTGCTTTCGAAGAATCTGTTGGCAGCAGATTACATAAGTTTGGGGGATGTGATAATAAGGAATTGCTTCAAAG : GTTCACTTCCCAGTTTAAGGATGAAATTAAATTACCTCGGGGATCTATCATTGAACTCTCCAGAGATCATGACTACATACTCCACACAACAA : TTGATGGAAAGGAAGTGGGAAGCATACAAAGCAAACTCTTATGCAGATCAATCCTAGACCTATATATTGGTGATGAGTCATTTGATCACAAAGCCAATGAAGATGTCGAGTCGAACTTGGCTTCTCTACTTCACAAGTAGCTACTTCTTTAGCATAAAGAGAATTTTATCAACACGAGGAATCAAGTTGTGGTGATTTATACTTAACGCATGTTAGCTTCTATTGGTTGGATGATTCTCTTTAAATAGTTGAACTAGAGAATTAATCTCTTGCAAACTGAACTTAGATCTATGTTTTATATGCTGATGAGTGGTTTTCTCTACTCCTGTAATATTTTGCTTTGCAATTTTTATAGCATGATTGAAATAAGTATGTTGGCTTGGTTACCAAATTTCTTTTATTTACCTCATTGAAATGCATCTTGGAGTGTTTACTGCTAAG : AACAATAATTATTAAAGAATATAGGAAGAGCAAAACAAATTTGAGG</gDNA_template>
            <first_frame> I  C  *  C  *  Y  G  C  C  K  G  S  S  K  G  C  *  S  I  S  S  *  G  P  *  A  S  V  R  V  C  N  C  P   : G  Y  L  S  G  K  C  L  S  D  V  *  V  I  R  G  F  Q  C  I  V  I  K  K  C  L  H  C  I  H  I  G  E  V  R  Q  I  K  C  H  A  M  :  V  F  A  I  D  S  T  Y  I  T  *  D  T  C  V  L  C  *  G  A  E  Q  A  N  S  S  *  P  L  I  *  V  H  F  Y  S  L  I  R  C  S  I  *  C  K  L  Y  R  K  W  V  L  F  H  S  S  L  I  A  R  V  M  C   : L  N  K  K  *  K  M  A  S  L  R  F  P  F  L  F  P  Q  P  H  K  T  P  S  S  A  T  S  D  A  P  S  R  S  F  S  T  V  A  V  A  V  A  S  G  G  S  A  L  A  A  A  G  A  I  I  A  I  T  Q  S  P  K  N  P  F  L  E  N  A  M  N  F  L  L  S  N  F  S  P  N  K  N  H  S  S  P  L  W  G  S  V  S  L  A  D  N  S  A  P  V  T  E  S  R  T  G  M  A  F  P  S  I  L  K  D  T  Q  R  L  L  G  I  G  L  R  K  K  A  V  F  G  L  K  N  I  D  V  Y  A  Y   : G  V  Y  A  D  D  V  D  V  K  R  Y  L  A  E  K  H  G  R  R  S  V  S  E  L  Q  Q  K  E  E  L  R  N  H  L  M  E  N  N  I  R  M  T  I  R  L  Q  I  V  Y  G  R  L  S  I  N  S  V  R  S  A  F  E  E  S  V  G  S  R  L  H  K  F  G  G  C  D  N  K  E  L  L  Q  R :   F  T  S  Q  F  K  D  E  I  K  L  P  R  G  S  I  I  E  L  S  R  D  H  D  Y  I  L  H  T  T   : I  D  G  K  E  V  G  S  I  Q  S  K  L  L  C  R  S  I  L  D  L  Y  I  G  D  E  S  F  D  H  K  A  N  E  D  V  E  S  N  L  A  S  L  L  H  K  *  L  L  L  *  H  K  E  N  F  I  N  T  R  N  Q  V  V  V  I  Y  T  *  R  M  L  A  S  I  G  W  M  I  L  F  K  *  L  N  *  R  I  N  L  L  Q  T  E  L  R  S  M  F  Y  M  L  M  S  G  F  L  Y  S  C  N  I  L  L  C  N  F  Y  S  M  I  E  I  S  M  L  A  W  L  P  N  F  F  Y  L  P  H  *  N  A  S  W  S  V  Y  C  *   : E  Q  *  L  L  K  N  I  G  R  A  K  Q  I  *   </first_frame>
            <second_frame>  S  V  D  V  N  M  G  V  A  K  D  L  L  R  V  A  D  Q  Y  L  L  E  G  L  K  R  L  C  E  Y  A  I  A  Q  :  D  I  S  V  E  N  V  S  L  M  F  E  L  S  E  A  F  N  A  L  S  L  R  N  A  C  I  V  F  T  L  E  K  F  D  K  L  S  V  M  P  W :   Y  S  Q  L  I  Q  L  I  L  P  E  T  R  A  Y  F  A  R  V  L  S  R  P  I  Q  A  D  L  *  F  R  F  I  F  I  L  *  L  D  V  V  Y  D  V  N  C  T  G  S  G  F  Y  S  T  R  L  *  L  Q  E  L  C  V  :  *  I  K  N  K  K  W  L  L  F  V  F  H  S  C  F  L  S  P  T  R  L  R  L  P  P  L  Q  M  L  H  L  A  P  S  P  P  S  L  S  P  S  R  P  E  V  Q  P  S  L  P  P  E  R  S  L  P  *  L  K  A  P  K  I  R  F  W  K  M  L  *  I  F  Y  F  P  I  S  H  L  T  K  I  I  H  P  L  C  G  V  L  F  L  *  Q  I  T  Q  L  R  S  L  N  R  G  P  E  W  H  S  P  Q  F  *  K  I  L  S  D  S  L  E  L  G  C  V  K  R  R  F  L  D  *  K  T  L  M  S  M  L  M  :  V  C  M  L  M  M  L  M  *  R  G  I  W  L  R  S  M  D  G  A  L  F  L  N  C  S  K  R  K  S  *  E  I  I  S  W  K  T  I  Y  A  *  L  S  G  F  K  *  S  M  A  G  *  A  L  I  L  C  A  V  L  S  K  N  L  L  A  A  D  Y  I  S  L  G  D  V  I  I  R  N  C  F  K   : G  S  L  P  S  L  R  M  K  L  N  Y  L  G  D  L  S  L  N  S  P  E  I  M  T  T  Y  S  T  Q  Q  :  L  M  E  R  K  W  E  A  Y  K  A  N  S  Y  A  D  Q  S  *  T  Y  I  L  V  M  S  H  L  I  T  K  P  M  K  M  S  S  R  T  W  L  L  Y  F  T  S  S  Y  F  F  S  I  K  R  I  L  S  T  R  G  I  K  L  W  *  F  I  L  N  A  C  *  L  L  L  V  G  *  F  S  L  N  S  *  T  R  E  L  I  S  C  K  L  N  L  D  L  C  F  I  C  *  *  V  V  F  S  T  P  V  I  F  C  F  A  I  F  I  A  *  L  K  *  V  C  W  L  G  Y  Q  I  S  F  I  Y  L  I  E  M  H  L  G  V  F  T  A  K  :  N  N  N  Y  *  R  I  *  E  E  Q  N  K  F  E  </second_frame>
            <third_frame>   L  L  M  L  I  W  V  L  Q  R  I  F  *  G  L  L  I  N  I  F  L  R  A  L  S  V  C  A  S  M  Q  L  P  R :   I  S  Q  W  K  M  S  L  *  C  L  S  Y  Q  R  L  S  M  H  C  H  *  E  M  L  A  L  Y  S  H  W  R  S  S  T  N  *  V  S  C  H   : G  I  R  N  *  F  N  L  Y  Y  L  R  H  V  R  T  L  L  G  C  *  A  G  Q  F  K  L  T  S  D  L  G  S  F  L  F  F  D  *  M  *  Y  M  M  *  I  V  Q  E  V  G  F  I  P  L  V  S  N  C  K  S  Y  V  S :   K  *  K  I  K  N  G  F  S  S  F  S  I  L  V  S  S  A  P  Q  D  S  V  F  R  H  F  R  C  S  I  S  L  L  L  H  R  R  C  R  R  R  V  R  R  F  S  P  R  C  R  R  S  D  H  C  H  N  S  K  P  Q  K  S  V  S  G  K  C  Y  E  F  S  T  F  Q  F  L  T  *  Q  K  S  F  I  P  F  V  G  F  C  F  S  S  R  *  L  S  S  G  H  *  I  E  D  R  N  G  I  P  L  N  S  E  R  Y  S  A  T  P  W  N  W  A  A  *  K  G  G  F  W  I  E  K  H  *  C  L  C  L  W :   C  V  C  *  *  C  *  C  K  E  V  S  G  *  E  A  W  T  A  L  C  F  *  T  A  A  K  G  R  V  E  K  S  S  H  G  K  Q  Y  T  H  D  Y  Q  A  S  N  S  L  W  Q  A  K  H  *  F  C  A  Q  C  F  R  R  I  C  W  Q  Q  I  T  *  V  W  G  M  *  *  *  G  I  A  S  K  :  V  H  F  P  V  *  G  *  N  *  I  T  S  G  I  Y  H  *  T  L  Q  R  S  *  L  H  T  P  H  N  N :   *  W  K  G  S  G  K  H  T  K  Q  T  L  M  Q  I  N  P  R  P  I  Y  W  *  *  V  I  *  S  Q  S  Q  *  R  C  R  V  E  L  G  F  S  T  S  Q  V  A  T  S  L  A  *  R  E  F  Y  Q  H  E  E  S  S  C  G  D  L  Y  L  T  H  V  S  F  Y  W  L  D  D  S  L  *  I  V  E  L  E  N  *  S  L  A  N  *  T  *  I  Y  V  L  Y  A  D  E  W  F  S  L  L  L  *  Y  F  A  L  Q  F  L  *  H  D  *  N  K  Y  V  G  L  V  T  K  F  L  L  F  T  S  L  K  C  I  L  E  C  L  L  L  R :   T  I  I  I  K  E  Y  R  K  S  K  T  N  L  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73154" stop="73562"/>
                    <exon start="74671" stop="74920"/>
                    <exon start="76798" stop="76889"/>
                    <exon start="77832" stop="77971"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>888</number_coding_nucleotides>
                  <number_encoded_amino_acids>296</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMASLRFPFLFPQPHKTPSSATSDAPSRSFSTVAVAVASGGSALAAAGAIIAITQSPKNPFLENAMNFLLSNFSPNKNHSSPLWGSVSLADNSAPVTESRTGMAFPSILKDTQRLLGIGLRKKAVFGLKNIDVYAYGVYADDVDVKRYLAEKHGRRSVSELQQKEELRNHLMENNIRMTIRLQIVYGRLSINSVRSAFEESVGSRLHKFGGCDNKELLQRFTSQFKDEIKLPRGSIIELSRDHDYILHTTIDGKEVGSIQSKLLCRSILDLYIGDESFDHKANEDVESNLASLLHK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70883" stop="70984"/>
                    <exon start="71061" stop="71185"/>
                    <exon start="71293" stop="71380"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVDVNMGVAKDLLRVADQYLLEGLKRLCEYAIAQDISVENVSLMFELSEAFNALSLRNACIVFTLEKFDKLSVMPWYSQLIQLILPETRAYFARVLSRPIQADL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="68929" e_stop="68948"/>
            <exon e_start="70073" e_stop="70136"/>
            <exon e_start="70218" e_stop="70297"/>
            <exon e_start="70719" e_stop="70783"/>
            <exon e_start="70867" e_stop="70984"/>
            <exon e_start="71061" e_stop="71185"/>
            <exon e_start="71293" e_stop="71562"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.030" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.731" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.184" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.857" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68929" e_stop="68948" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68949" i_stop="70072" i_length="1124"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70073" e_stop="70136" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.030" acc_prob="0.981">
            <gDNA_intron_boundary i_start="70137" i_stop="70217" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70218" e_stop="70297" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70298" i_stop="70718" i_length="421"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70719" e_stop="70783" e_length="65"/>
          </exon>
          <intron i_serial="4" don_prob="0.731" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70784" i_stop="70866" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70867" e_stop="70984" e_length="118"/>
          </exon>
          <intron i_serial="5" don_prob="0.184" acc_prob="0.908">
            <gDNA_intron_boundary i_start="70985" i_stop="71060" i_length="76"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71061" e_stop="71185" e_length="125"/>
          </exon>
          <intron i_serial="6" don_prob="0.857" acc_prob="0.968">
            <gDNA_intron_boundary i_start="71186" i_stop="71292" i_length="107"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="71293" e_stop="71562" e_length="270"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68929" stop="68948"/>
              <exon start="70073" stop="70136"/>
              <exon start="70218" stop="70297"/>
              <exon start="70719" stop="70783"/>
              <exon start="70867" stop="70984"/>
              <exon start="71061" stop="71185"/>
              <exon start="71293" stop="71562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355460" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCCATCTCCTACACCTCAG : GTCTATCTGGGTGAGCTGTATGTAAATAATTCTACGCTATCTGATGTGACATTTTTAGTCGAAG : GCAAACGGTTTTATGCCCACAGAATTTGTTTACTTGCTTCTTCTGATGCATTTCGCGCAATGTTTGATGGTGGCTACAGG : GAGAGAGATGCCAAAGATATAGAGATTCCCAACATTCCATGGGATGTTTTTGAGTTGATGATGAG : GTACATATACACGGGATCTGTTGATGTTAATATGGGTGTTGCAAAGGATCTTCTAAGGGTTGCTGATCAATATCTTCTTGAGGGCCTTAAGCGTCTGTGCGAGTATGCAATTGCCCAG : GATATCTCAGTGGAAAATGTCTCTCTGATGTTTGAGTTATCAGAGGCTTTCAATGCATTGTCATTAAGAAATGCTTGCATTGTATTCACATTGGAGAAGTTCGACAAATTAAGTGTCATGCCATG : GTATTCGCAATTGATTCAACTTATATTACCTGAGACACGTGCGTACTTTGCTAGGGTGCTGAGCAGGCCAATTCAAGCTGACCTCTGATTTAGGTTCATTTTTATTCTTTGATTAGATGTAGTATATGATGTAAATTGTACAGGAAGTGGGTTTTATTCCACTCGTCTCTAATTGCAAGAGTTATGTGTCATTTCTCATCGCTTGCAATTCCATATTTGTTGTGACGTTTAATGTAGCGTATGAAGTTCAGTTGCAACGCCTGCCATGCT</gDNA_template>
            <first_frame> L  H  L  L  H  L  R :   S  I  W  V  S  C  M  *  I  I  L  R  Y  L  M  *  H  F  *  S  K  :  A  N  G  F  M  P  T  E  F  V  Y  L  L  L  L  M  H  F  A  Q  C  L  M  V  A  T  G :   R  E  M  P  K  I  *  R  F  P  T  F  H  G  M  F  L  S  *  *  *   : G  T  Y  T  R  D  L  L  M  L  I  W  V  L  Q  R  I  F  *  G  L  L  I  N  I  F  L  R  A  L  S  V  C  A  S  M  Q  L  P  R :   I  S  Q  W  K  M  S  L  *  C  L  S  Y  Q  R  L  S  M  H  C  H  *  E  M  L  A  L  Y  S  H  W  R  S  S  T  N  *  V  S  C  H   : G  I  R  N  *  F  N  L  Y  Y  L  R  H  V  R  T  L  L  G  C  *  A  G  Q  F  K  L  T  S  D  L  G  S  F  L  F  F  D  *  M  *  Y  M  M  *  I  V  Q  E  V  G  F  I  P  L  V  S  N  C  K  S  Y  V  S  F  L  I  A  C  N  S  I  F  V  V  T  F  N  V  A  Y  E  V  Q  L  Q  R  L  P  C  </first_frame>
            <second_frame>  S  I  S  Y  T  S   : G  L  S  G  *  A  V  C  K  *  F  Y  A  I  *  C  D  I  F  S  R  R :   Q  T  V  L  C  P  Q  N  L  F  T  C  F  F  *  C  I  S  R  N  V  *  W  W  L  Q   : G  E  R  C  Q  R  Y  R  D  S  Q  H  S  M  G  C  F  *  V  D  D  E  :  V  H  I  H  G  I  C  *  C  *  Y  G  C  C  K  G  S  S  K  G  C  *  S  I  S  S  *  G  P  *  A  S  V  R  V  C  N  C  P   : G  Y  L  S  G  K  C  L  S  D  V  *  V  I  R  G  F  Q  C  I  V  I  K  K  C  L  H  C  I  H  I  G  E  V  R  Q  I  K  C  H  A  M  :  V  F  A  I  D  S  T  Y  I  T  *  D  T  C  V  L  C  *  G  A  E  Q  A  N  S  S  *  P  L  I  *  V  H  F  Y  S  L  I  R  C  S  I  *  C  K  L  Y  R  K  W  V  L  F  H  S  S  L  I  A  R  V  M  C  H  F  S  S  L  A  I  P  Y  L  L  *  R  L  M  *  R  M  K  F  S  C  N  A  C  H  A </second_frame>
            <third_frame>   P  S  P  T  P  Q  :  V  Y  L  G  E  L  Y  V  N  N  S  T  L  S  D  V  T  F  L  V  E   : G  K  R  F  Y  A  H  R  I  C  L  L  A  S  S  D  A  F  R  A  M  F  D  G  G  Y  R  :  E  R  D  A  K  D  I  E  I  P  N  I  P  W  D  V  F  E  L  M  M  R :   Y  I  Y  T  G  S  V  D  V  N  M  G  V  A  K  D  L  L  R  V  A  D  Q  Y  L  L  E  G  L  K  R  L  C  E  Y  A  I  A  Q  :  D  I  S  V  E  N  V  S  L  M  F  E  L  S  E  A  F  N  A  L  S  L  R  N  A  C  I  V  F  T  L  E  K  F  D  K  L  S  V  M  P  W :   Y  S  Q  L  I  Q  L  I  L  P  E  T  R  A  Y  F  A  R  V  L  S  R  P  I  Q  A  D  L  *  F  R  F  I  F  I  L  *  L  D  V  V  Y  D  V  N  C  T  G  S  G  F  Y  S  T  R  L  *  L  Q  E  L  C  V  I  S  H  R  L  Q  F  H  I  C  C  D  V  *  C  S  V  *  S  S  V  A  T  P  A  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68931" stop="68948"/>
                    <exon start="70073" stop="70136"/>
                    <exon start="70218" stop="70297"/>
                    <exon start="70719" stop="70783"/>
                    <exon start="70867" stop="70984"/>
                    <exon start="71061" stop="71185"/>
                    <exon start="71293" stop="71380"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPTPQVYLGELYVNNSTLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYRERDAKDIEIPNIPWDVFELMMRYIYTGSVDVNMGVAKDLLRVADQYLLEGLKRLCEYAIAQDISVENVSLMFELSEAFNALSLRNACIVFTLEKFDKLSVMPWYSQLIQLILPETRAYFARVLSRPIQADL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="79403" PGL_stop="85415"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79403" e_stop="79639"/>
            <exon e_start="81449" e_stop="81592"/>
            <exon e_start="81701" e_stop="81817"/>
            <exon e_start="82715" e_stop="82858"/>
            <exon e_start="82943" e_stop="83029"/>
            <exon e_start="83720" e_stop="83835"/>
            <exon e_start="84269" e_stop="84450"/>
            <exon e_start="84743" e_stop="85415"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.992"/>
          <exon-intron don_prob="0.796" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.742" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="79403" e_stop="79639" e_length="237"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79640" i_stop="81448" i_length="1809"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81449" e_stop="81592" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.796" acc_prob="0.995">
            <gDNA_intron_boundary i_start="81593" i_stop="81700" i_length="108"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81701" e_stop="81817" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="81818" i_stop="82714" i_length="897"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="82715" e_stop="82858" e_length="144"/>
          </exon>
          <intron i_serial="4" don_prob="0.935" acc_prob="0.992">
            <gDNA_intron_boundary i_start="82859" i_stop="82942" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="82943" e_stop="83029" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.938" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83030" i_stop="83719" i_length="690"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="83720" e_stop="83835" e_length="116"/>
          </exon>
          <intron i_serial="6" don_prob="0.868" acc_prob="0.742">
            <gDNA_intron_boundary i_start="83836" i_stop="84268" i_length="433"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="84269" e_stop="84450" e_length="182"/>
          </exon>
          <intron i_serial="7" don_prob="0.975" acc_prob="0.996">
            <gDNA_intron_boundary i_start="84451" i_stop="84742" i_length="292"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="84743" e_stop="85415" e_length="673"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79403" stop="79639"/>
              <exon start="81449" stop="81592"/>
              <exon start="81701" stop="81817"/>
              <exon start="82715" stop="82807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79450" stop="79639"/>
              <exon start="81449" stop="81592"/>
              <exon start="81701" stop="81789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79469" stop="79639"/>
              <exon start="81449" stop="81592"/>
              <exon start="81701" stop="81817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79472" stop="79639"/>
              <exon start="81449" stop="81592"/>
              <exon start="81701" stop="81716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79503" stop="79639"/>
              <exon start="81449" stop="81592"/>
              <exon start="81701" stop="81817"/>
              <exon start="82715" stop="82858"/>
              <exon start="82943" stop="83029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79522" stop="79639"/>
              <exon start="81449" stop="81592"/>
              <exon start="81701" stop="81817"/>
              <exon start="82715" stop="82858"/>
              <exon start="82943" stop="83029"/>
              <exon start="83720" stop="83826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81541" stop="81592"/>
              <exon start="81701" stop="81817"/>
              <exon start="82715" stop="82858"/>
              <exon start="82943" stop="83029"/>
              <exon start="83720" stop="83835"/>
              <exon start="84269" stop="84398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83720" stop="83835"/>
              <exon start="84269" stop="84450"/>
              <exon start="84743" stop="85164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83720" stop="83835"/>
              <exon start="84269" stop="84450"/>
              <exon start="84743" stop="85119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83720" stop="83835"/>
              <exon start="84269" stop="84450"/>
              <exon start="84743" stop="84878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84767" stop="85415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84767" stop="85403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550363" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAAATATCCTTTGTATACCAACAAGCTTCTCCAAGTATATGTTCAAACAAATGCCTTGTGCAGTGGTAAATCTGAAGCGATAATCTGCAACCGATGGCTACACAGCTCCCTGGTTTGTTGCTGAACAGCGCTGGCCTTACACTCGCCGGCGCCCGGTCTCTTAGTTGCCGGAACAATCAACCACCGGCAGCTATCTCCTCTGCCAACCCTCCTTCTCTCTCTTCCACAATTCAG : GTTGTTGGTTGGAAAGGTGCTGGAGGATCTGGCAGTGAGAATTCAAAACTTTTTAATTCTTTTGAAGACAATCAAGAAGAATATGACTGGAATGATCTAGAAACCGATCTTTACCATTGGACAAAGACTTTACGACCAGTTCAG : TGGTATCCTGGTCATATCGCGAAAACTGAGAAAGAGCTCAAGGAACAGTTGAAACTAATGGATGTTGTCATAGAGGTTCGAGATGCAAGAATCCCGATGTCCACAAGTCATCCACAG : ATGGACTCATGGCTTGGCAACAGAAAGAGGATCTTGGTTTTGAATCGAGAGGATATGATATCAACTGCTGATCGGAATGCTTGGGCAACTTATTATGCTAATCAAGGGATTAAAGTTGTTTTCTCCAATGGCCAGCTTGGAATG : GGAGCACTGAAGCTTGGAAGGTTGGCGAAAGCATTAGCGGGTACTGTAAACATAAAACGTAAAGCAAAAGGACTACTTCCTCGCCCA : GTTCGAGCTGGTGTAGTTGGGTATCCAAATGTTGGTAAGTCATCTCTGGTAAATCGTTTGCTGAAGCGCCGGATGTGTGCTGCAGCCCCAAGACCAGGTGTCACCAGAGAGCTGAA : GTGGGTCCGTTTTGGGAAAGATCTAGAGCTACTGGATTCACCTGGTATAATTCCTATGAGGATCAGTGATCAGACAGCAGCAATAAAGCTTGCCATATGTGATGATATTGGAGAGAGATCTTATGATGCCGCAGATGTTGCAGCTATTCTTGTACAGATGCTTTCAGGGCTTCCAACTGTTG : GTAATAAAGTTCTGTGTGACCGCTACAAGATTGAGGCAGATGGGCGCAGTGGTAAAATGTGTGTATGGCAAATTATACCCAAAGGGTGTATCTGAAGTATGAGTTCCCCTGCAAGGATTTGTTCTATATTTCCATTTTGATCTTTGTTTGTTTTGGTTGAAGATTTGTTCAGAAGCTGGCTGTTCAGTTATTCAATGCGGACAATAATCAAGCAGCATTTCGTATTTTGCAAGATTTCCGGAAAGGGAAATTTGGTTGGATAGCACTAGAGCGGCCACCCAAGTAGAGCTGTGCGTTTCATACCTTGTTCTAGTGCTTTCATGTATATCAGTTAAAGCTGGTGGAAAATTCTTGGAAGCTTCAACATAGAAGTACCTAGACGGAGAAAACCAGGAAGAAGCTGTTGGCATCTTCACCTGCAAGCTGGAAAGGTATATATACACCATTGAACCTACTCAATGAAGCTAACCTACGGTGTAATTGGTTCTTTAGTTCCATTAGTGTGAGGCAGCAATGATGAGTTTGGTTTATAATTGTCAGTTGTAACTGTTATCTTCAGACGACTAAATTATAGTTTGGCTACAATTCCATCAGTTGGAATTTGCTGAAACATTTCAACTTTAGTTATCTACCTGCTGTAAATATGAAGGTGGTGATGTAGACTGTCATTAGT</gDNA_template>
            <first_frame> K  K  I  S  F  V  Y  Q  Q  A  S  P  S  I  C  S  N  K  C  L  V  Q  W  *  I  *  S  D  N  L  Q  P  M  A  T  Q  L  P  G  L  L  L  N  S  A  G  L  T  L  A  G  A  R  S  L  S  C  R  N  N  Q  P  P  A  A  I  S  S  A  N  P  P  S  L  S  S  T  I  Q  :  V  V  G  W  K  G  A  G  G  S  G  S  E  N  S  K  L  F  N  S  F  E  D  N  Q  E  E  Y  D  W  N  D  L  E  T  D  L  Y  H  W  T  K  T  L  R  P  V  Q  :  W  Y  P  G  H  I  A  K  T  E  K  E  L  K  E  Q  L  K  L  M  D  V  V  I  E  V  R  D  A  R  I  P  M  S  T  S  H  P  Q  :  M  D  S  W  L  G  N  R  K  R  I  L  V  L  N  R  E  D  M  I  S  T  A  D  R  N  A  W  A  T  Y  Y  A  N  Q  G  I  K  V  V  F  S  N  G  Q  L  G  M  :  G  A  L  K  L  G  R  L  A  K  A  L  A  G  T  V  N  I  K  R  K  A  K  G  L  L  P  R  P  :  V  R  A  G  V  V  G  Y  P  N  V  G  K  S  S  L  V  N  R  L  L  K  R  R  M  C  A  A  A  P  R  P  G  V  T  R  E  L  K :   W  V  R  F  G  K  D  L  E  L  L  D  S  P  G  I  I  P  M  R  I  S  D  Q  T  A  A  I  K  L  A  I  C  D  D  I  G  E  R  S  Y  D  A  A  D  V  A  A  I  L  V  Q  M  L  S  G  L  P  T  V   : G  N  K  V  L  C  D  R  Y  K  I  E  A  D  G  R  S  G  K  M  C  V  W  Q  I  I  P  K  G  C  I  *  S  M  S  S  P  A  R  I  C  S  I  F  P  F  *  S  L  F  V  L  V  E  D  L  F  R  S  W  L  F  S  Y  S  M  R  T  I  I  K  Q  H  F  V  F  C  K  I  S  G  K  G  N  L  V  G  *  H  *  S  G  H  P  S  R  A  V  R  F  I  P  C  S  S  A  F  M  Y  I  S  *  S  W  W  K  I  L  G  S  F  N  I  E  V  P  R  R  R  K  P  G  R  S  C  W  H  L  H  L  Q  A  G  K  V  Y  I  H  H  *  T  Y  S  M  K  L  T  Y  G  V  I  G  S  L  V  P  L  V  *  G  S  N  D  E  F  G  L  *  L  S  V  V  T  V  I  F  R  R  L  N  Y  S  L  A  T  I  P  S  V  G  I  C  *  N  I  S  T  L  V  I  Y  L  L  *  I  *  R  W  *  C  R  L  S  L   </first_frame>
            <second_frame>  K  K  Y  P  L  Y  T  N  K  L  L  Q  V  Y  V  Q  T  N  A  L  C  S  G  K  S  E  A  I  I  C  N  R  W  L  H  S  S  L  V  C  C  *  T  A  L  A  L  H  S  P  A  P  G  L  L  V  A  G  T  I  N  H  R  Q  L  S  P  L  P  T  L  L  L  S  L  P  Q  F  R :   L  L  V  G  K  V  L  E  D  L  A  V  R  I  Q  N  F  L  I  L  L  K  T  I  K  K  N  M  T  G  M  I  *  K  P  I  F  T  I  G  Q  R  L  Y  D  Q  F  S :   G  I  L  V  I  S  R  K  L  R  K  S  S  R  N  S  *  N  *  W  M  L  S  *  R  F  E  M  Q  E  S  R  C  P  Q  V  I  H  R :   W  T  H  G  L  A  T  E  R  G  S  W  F  *  I  E  R  I  *  Y  Q  L  L  I  G  M  L  G  Q  L  I  M  L  I  K  G  L  K  L  F  S  P  M  A  S  L  E  W :   E  H  *  S  L  E  G  W  R  K  H  *  R  V  L  *  T  *  N  V  K  Q  K  D  Y  F  L  A  Q :   F  E  L  V  *  L  G  I  Q  M  L  V  S  H  L  W  *  I  V  C  *  S  A  G  C  V  L  Q  P  Q  D  Q  V  S  P  E  S  *   : S  G  S  V  L  G  K  I  *  S  Y  W  I  H  L  V  *  F  L  *  G  S  V  I  R  Q  Q  Q  *  S  L  P  Y  V  M  I  L  E  R  D  L  M  M  P  Q  M  L  Q  L  F  L  Y  R  C  F  Q  G  F  Q  L  L  :  V  I  K  F  C  V  T  A  T  R  L  R  Q  M  G  A  V  V  K  C  V  Y  G  K  L  Y  P  K  G  V  S  E  V  *  V  P  L  Q  G  F  V  L  Y  F  H  F  D  L  C  L  F  W  L  K  I  C  S  E  A  G  C  S  V  I  Q  C  G  Q  *  S  S  S  I  S  Y  F  A  R  F  P  E  R  E  I  W  L  D  S  T  R  A  A  T  Q  V  E  L  C  V  S  Y  L  V  L  V  L  S  C  I  S  V  K  A  G  G  K  F  L  E  A  S  T  *  K  Y  L  D  G  E  N  Q  E  E  A  V  G  I  F  T  C  K  L  E  R  Y  I  Y  T  I  E  P  T  Q  *  S  *  P  T  V  *  L  V  L  *  F  H  *  C  E  A  A  M  M  S  L  V  Y  N  C  Q  L  *  L  L  S  S  D  D  *  I  I  V  W  L  Q  F  H  Q  L  E  F  A  E  T  F  Q  L  *  L  S  T  C  C  K  Y  E  G  G  D  V  D  C  H  *  </second_frame>
            <third_frame>   K  N  I  L  C  I  P  T  S  F  S  K  Y  M  F  K  Q  M  P  C  A  V  V  N  L  K  R  *  S  A  T  D  G  Y  T  A  P  W  F  V  A  E  Q  R  W  P  Y  T  R  R  R  P  V  S  *  L  P  E  Q  S  T  T  G  S  Y  L  L  C  Q  P  S  F  S  L  F  H  N  S   : G  C  W  L  E  R  C  W  R  I  W  Q  *  E  F  K  T  F  *  F  F  *  R  Q  S  R  R  I  *  L  E  *  S  R  N  R  S  L  P  L  D  K  D  F  T  T  S  S   : V  V  S  W  S  Y  R  E  N  *  E  R  A  Q  G  T  V  E  T  N  G  C  C  H  R  G  S  R  C  K  N  P  D  V  H  K  S  S  T   : D  G  L  M  A  W  Q  Q  K  E  D  L  G  F  E  S  R  G  Y  D  I  N  C  *  S  E  C  L  G  N  L  L  C  *  S  R  D  *  S  C  F  L  Q  W  P  A  W  N   : G  S  T  E  A  W  K  V  G  E  S  I  S  G  Y  C  K  H  K  T  *  S  K  R  T  T  S  S  P   : S  S  S  W  C  S  W  V  S  K  C  W  *  V  I  S  G  K  S  F  A  E  A  P  D  V  C  C  S  P  K  T  R  C  H  Q  R  A  E  :  V  G  P  F  W  E  R  S  R  A  T  G  F  T  W  Y  N  S  Y  E  D  Q  *  S  D  S  S  N  K  A  C  H  M  *  *  Y  W  R  E  I  L  *  C  R  R  C  C  S  Y  S  C  T  D  A  F  R  A  S  N  C  W :   *  *  S  S  V  *  P  L  Q  D  *  G  R  W  A  Q  W  *  N  V  C  M  A  N  Y  T  Q  R  V  Y  L  K  Y  E  F  P  C  K  D  L  F  Y  I  S  I  L  I  F  V  C  F  G  *  R  F  V  Q  K  L  A  V  Q  L  F  N  A  D  N  N  Q  A  A  F  R  I  L  Q  D  F  R  K  G  K  F  G  W  I  A  L  E  R  P  P  K  *  S  C  A  F  H  T  L  F  *  C  F  H  V  Y  Q  L  K  L  V  E  N  S  W  K  L  Q  H  R  S  T  *  T  E  K  T  R  K  K  L  L  A  S  S  P  A  S  W  K  G  I  Y  T  P  L  N  L  L  N  E  A  N  L  R  C  N  W  F  F  S  S  I  S  V  R  Q  Q  *  *  V  W  F  I  I  V  S  C  N  C  Y  L  Q  T  T  K  L  *  F  G  Y  N  S  I  S  W  N  L  L  K  H  F  N  F  S  Y  L  P  A  V  N  M  K  V  V  M  *  T  V  I  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79481" stop="79639"/>
                    <exon start="81449" stop="81592"/>
                    <exon start="81701" stop="81817"/>
                    <exon start="82715" stop="82858"/>
                    <exon start="82943" stop="83029"/>
                    <exon start="83720" stop="83835"/>
                    <exon start="84269" stop="84450"/>
                    <exon start="84743" stop="84837"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1041</number_coding_nucleotides>
                  <number_encoded_amino_acids>347</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDNLQPMATQLPGLLLNSAGLTLAGARSLSCRNNQPPAAISSANPPSLSSTIQVVGWKGAGGSGSENSKLFNSFEDNQEEYDWNDLETDLYHWTKTLRPVQWYPGHIAKTEKELKEQLKLMDVVIEVRDARIPMSTSHPQMDSWLGNRKRILVLNREDMISTADRNAWATYYANQGIKVVFSNGQLGMGALKLGRLAKALAGTVNIKRKAKGLLPRPVRAGVVGYPNVGKSSLVNRLLKRRMCAAAPRPGVTRELKWVRFGKDLELLDSPGIIPMRISDQTAAIKLAICDDIGERSYDAADVAAILVQMLSGLPTVGNKVLCDRYKIEADGRSGKMCVWQIIPKGCI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="79406" e_stop="79639"/>
            <exon e_start="81449" e_stop="81592"/>
            <exon e_start="81699" e_stop="81817"/>
            <exon e_start="82694" e_stop="82858"/>
            <exon e_start="82943" e_stop="82974"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.927"/>
          <exon-intron don_prob="0.796" acc_prob="0.000" e_score="0.979"/>
          <exon-intron don_prob="0.999" acc_prob="0.848" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.992" e_score="0.939"/>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="79406" e_stop="79639" e_length="234"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79640" i_stop="81448" i_length="1809"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="81449" e_stop="81592" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.796" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81593" i_stop="81698" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81699" e_stop="81817" e_length="119"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.848">
            <gDNA_intron_boundary i_start="81818" i_stop="82693" i_length="876"/>
          </intron>
          <exon e_serial="4" e_score="0.939">
            <gDNA_exon_boundary e_start="82694" e_stop="82858" e_length="165"/>
          </exon>
          <intron i_serial="4" don_prob="0.935" acc_prob="0.992">
            <gDNA_intron_boundary i_start="82859" i_stop="82942" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="0.906">
            <gDNA_exon_boundary e_start="82943" e_stop="82974" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79406" stop="79639"/>
              <exon start="81449" stop="81592"/>
              <exon start="81699" stop="81817"/>
              <exon start="82694" stop="82858"/>
              <exon start="82943" stop="82974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455224" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATATCCTTTGTATACCAACAAGCTTCTCCAAGTATATGTTCAAACAAATGCCTTGTGCAGTGGTAAATCTGAAGCGATAATCTGCAACCGATGGCTACACAGCTCCCTGGTTTGTTGCTGAACAGCGCTGGCCTTACACTCGCCGGCGCCCGGTCTCTTAGTTGCCGGAACAATCAACCACCGGCAGCTATCTCCTCTGCCAACCCTCCTTCTCTCTCTTCCACAATTCAG : GTTGTTGGTTGGAAAGGTGCTGGAGGATCTGGCAGTGAGAATTCAAAACTTTTTAATTCTTTTGAAGACAATCAAGAAGAATATGACTGGAATGATCTAGAAACCGATCTTTACCATTGGACAAAGACTTTACGACCAGTTCAG : AGTGGTATCCTGGTCATATCGCGAAAACTGAGAAAGAGCTCAAGGAACAGTTGAAACTAATGGATGTTGTCATAGAGGTTCGAGATGCAAGAATCCCGATGTCCACAAGTCATCCACAG : TAATTCAACTTTGATAAGCAGATGGACTCATGGCTTGGCAACAGAAAGAGGATCTTGGTTTTGAATCGAGAGGATATGATATCAACTGCTGATCGGAATGCTTGGGCAACTTATTATGCTAATCAAGGGATTAAAGTTGTTTTCTCCAATGGCCAGCTTGGAATG : GGAGCACTGAAGCTTGGAAGGTTGGCGAAAGC</gDNA_template>
            <first_frame> K  I  S  F  V  Y  Q  Q  A  S  P  S  I  C  S  N  K  C  L  V  Q  W  *  I  *  S  D  N  L  Q  P  M  A  T  Q  L  P  G  L  L  L  N  S  A  G  L  T  L  A  G  A  R  S  L  S  C  R  N  N  Q  P  P  A  A  I  S  S  A  N  P  P  S  L  S  S  T  I  Q  :  V  V  G  W  K  G  A  G  G  S  G  S  E  N  S  K  L  F  N  S  F  E  D  N  Q  E  E  Y  D  W  N  D  L  E  T  D  L  Y  H  W  T  K  T  L  R  P  V  Q  :  S  G  I  L  V  I  S  R  K  L  R  K  S  S  R  N  S  *  N  *  W  M  L  S  *  R  F  E  M  Q  E  S  R  C  P  Q  V  I  H  S :   N  S  T  L  I  S  R  W  T  H  G  L  A  T  E  R  G  S  W  F  *  I  E  R  I  *  Y  Q  L  L  I  G  M  L  G  Q  L  I  M  L  I  K  G  L  K  L  F  S  P  M  A  S  L  E  W :   E  H  *  S  L  E  G  W  R  K  </first_frame>
            <second_frame>  K  Y  P  L  Y  T  N  K  L  L  Q  V  Y  V  Q  T  N  A  L  C  S  G  K  S  E  A  I  I  C  N  R  W  L  H  S  S  L  V  C  C  *  T  A  L  A  L  H  S  P  A  P  G  L  L  V  A  G  T  I  N  H  R  Q  L  S  P  L  P  T  L  L  L  S  L  P  Q  F  R :   L  L  V  G  K  V  L  E  D  L  A  V  R  I  Q  N  F  L  I  L  L  K  T  I  K  K  N  M  T  G  M  I  *  K  P  I  F  T  I  G  Q  R  L  Y  D  Q  F  R :   V  V  S  W  S  Y  R  E  N  *  E  R  A  Q  G  T  V  E  T  N  G  C  C  H  R  G  S  R  C  K  N  P  D  V  H  K  S  S  T   : V  I  Q  L  *  *  A  D  G  L  M  A  W  Q  Q  K  E  D  L  G  F  E  S  R  G  Y  D  I  N  C  *  S  E  C  L  G  N  L  L  C  *  S  R  D  *  S  C  F  L  Q  W  P  A  W  N   : G  S  T  E  A  W  K  V  G  E  S </second_frame>
            <third_frame>   N  I  L  C  I  P  T  S  F  S  K  Y  M  F  K  Q  M  P  C  A  V  V  N  L  K  R  *  S  A  T  D  G  Y  T  A  P  W  F  V  A  E  Q  R  W  P  Y  T  R  R  R  P  V  S  *  L  P  E  Q  S  T  T  G  S  Y  L  L  C  Q  P  S  F  S  L  F  H  N  S   : G  C  W  L  E  R  C  W  R  I  W  Q  *  E  F  K  T  F  *  F  F  *  R  Q  S  R  R  I  *  L  E  *  S  R  N  R  S  L  P  L  D  K  D  F  T  T  S  S   : E  W  Y  P  G  H  I  A  K  T  E  K  E  L  K  E  Q  L  K  L  M  D  V  V  I  E  V  R  D  A  R  I  P  M  S  T  S  H  P  Q  :  *  F  N  F  D  K  Q  M  D  S  W  L  G  N  R  K  R  I  L  V  L  N  R  E  D  M  I  S  T  A  D  R  N  A  W  A  T  Y  Y  A  N  Q  G  I  K  V  V  F  S  N  G  Q  L  G  M  :  G  A  L  K  L  G  R  L  A  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79481" stop="79639"/>
                    <exon start="81449" stop="81592"/>
                    <exon start="81699" stop="81752"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDNLQPMATQLPGLLLNSAGLTLAGARSLSCRNNQPPAAISSANPPSLSSTIQVVGWKGAGGSGSENSKLFNSFEDNQEEYDWNDLETDLYHWTKTLRPVQSGILVISRKLRKSSRNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82697" stop="82858"/>
                    <exon start="82943" stop="82972"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNFDKQMDSWLGNRKRILVLNREDMISTADRNAWATYYANQGIKVVFSNGQLGMGALKLGRLAK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="93959" PGL_stop="90419"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93959" e_stop="93791"/>
            <exon e_start="92572" e_stop="92414"/>
            <exon e_start="91220" e_stop="90575"/>
            <exon e_start="90431" e_stop="90419"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.991" e_score="0.982"/>
          <exon-intron don_prob="0.738" acc_prob="0.990" e_score="0.975"/>
          <exon-intron don_prob="0.000" acc_prob="0.923" e_score="0.998"/>
          <exon-only e_score="0.846"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="93959" e_stop="93791" e_length="169"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.991">
            <gDNA_intron_boundary i_start="93790" i_stop="92573" i_length="1218"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="92572" e_stop="92414" e_length="159"/>
          </exon>
          <intron i_serial="2" don_prob="0.738" acc_prob="0.990">
            <gDNA_intron_boundary i_start="92413" i_stop="91221" i_length="1193"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="91220" e_stop="90575" e_length="646"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.923">
            <gDNA_intron_boundary i_start="90574" i_stop="90432" i_length="143"/>
          </intron>
          <exon e_serial="4" e_score="0.846">
            <gDNA_exon_boundary e_start="90431" e_stop="90419" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93959" stop="93791"/>
              <exon start="92572" stop="92414"/>
              <exon start="91220" stop="90837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91218" stop="90575"/>
              <exon start="90431" stop="90419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91216" stop="90575"/>
              <exon start="90431" stop="90419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91163" stop="90674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309281" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGCTCCATTCCTAGTGTTTCAAGGTCGTCCACCTTCAGGGGCTCCCCGAAATGTTAAATTGACTTTGAGATTGGATCAGATGGATTGGAGCTCTGCTCAATGGAAAGGAGCAGATATTTTGGTATTCAACAGTGGTCACTGGTGGATTTATGAAAAAACTATTAGAGA : GGGATGTTACTTTCAACTAGGTGGAGAAGTCGATATGACGATGAATATTGAGACTGCATACAGGAGGTCAATATCGACATTGGTTGATTGGATAGGTCATGAAGTGAATATGACCAAGACACATGTCGTATTTCGAACTTATGCTCCTGTTCACTTTAG : AGGTGGAGACTGGAAGACTGGCGGCAACTGTCATCTTGAGAAGCTACCTAACATAGGATCATCCCAAGAGTCGGTGAAAACATCATTTGAATATAACACTGTGATCAATGTGCTGTCTGAGAAACAGAACAAATCAAAAACATGGAATTTGGATTTATTGAATGTAACAGGGATGACATTTCAGAGAAGAGACGGTCACTCATCTTTGTATTACTTAGGTCCCAAGGTTGGACCAGCTCCTCTCCACCGGCAAGACTGCAGCCACTGGTGCCTCCCCGGTGTCCCTGATACATGGAACGAGCTTCTATATGCCAACTTCCTCAAACGGGAGTTGGGTTGTGCAAAATTTTCCAAACAAACTAGTTAAAATCAACGGTGTGGCAGGTAAAGAGATGTTATAGCTCCAACATTTCAAATGTTACACCTCATACGCTTGCAGTGTCATGGACTATAAGACGTGTACCTTGGAAAGGGAACTCCATTTTCAAATTTTCGTGAGTGGAATGTGCCCCTTTTCAAGATTAAATAGTAGGGACAATTTTTGCAGCTTTGTATAGTTGGGATTATTTGGAATCTCTTCACCAAAATTACTGTAATGTAGTACATTATGTGTTGTTGTATAGCTGAAGAGAACAACATTAACCTA : AAAAACAAAACAA</gDNA_template>
            <first_frame> E  L  H  S  *  C  F  K  V  V  H  L  Q  G  L  P  E  M  L  N  *  L  *  D  W  I  R  W  I  G  A  L  L  N  G  K  E  Q  I  F  W  Y  S  T  V  V  T  G  G  F  M  K  K  L  L  E   : R  D  V  T  F  N  *  V  E  K  S  I  *  R  *  I  L  R  L  H  T  G  G  Q  Y  R  H  W  L  I  G  *  V  M  K  *  I  *  P  R  H  M  S  Y  F  E  L  M  L  L  F  T  L   : E  V  E  T  G  R  L  A  A  T  V  I  L  R  S  Y  L  T  *  D  H  P  K  S  R  *  K  H  H  L  N  I  T  L  *  S  M  C  C  L  R  N  R  T  N  Q  K  H  G  I  W  I  Y  *  M  *  Q  G  *  H  F  R  E  E  T  V  T  H  L  C  I  T  *  V  P  R  L  D  Q  L  L  S  T  G  K  T  A  A  T  G  A  S  P  V  S  L  I  H  G  T  S  F  Y  M  P  T  S  S  N  G  S  W  V  V  Q  N  F  P  N  K  L  V  K  I  N  G  V  A  G  K  E  M  L  *  L  Q  H  F  K  C  Y  T  S  Y  A  C  S  V  M  D  Y  K  T  C  T  L  E  R  E  L  H  F  Q  I  F  V  S  G  M  C  P  F  S  R  L  N  S  R  D  N  F  C  S  F  V  *  L  G  L  F  G  I  S  S  P  K  L  L  *  C  S  T  L  C  V  V  V  *  L  K  R  T  T  L  T  * :   K  T  K  Q </first_frame>
            <second_frame>  S  S  I  P  S  V  S  R  S  S  T  F  R  G  S  P  K  C  *  I  D  F  E  I  G  S  D  G  L  E  L  C  S  M  E  R  S  R  Y  F  G  I  Q  Q  W  S  L  V  D  L  *  K  N  Y  *  R  :  G  M  L  L  S  T  R  W  R  S  R  Y  D  D  E  Y  *  D  C  I  Q  E  V  N  I  D  I  G  *  L  D  R  S  *  S  E  Y  D  Q  D  T  C  R  I  S  N  L  C  S  C  S  L  *  :  R  W  R  L  E  D  W  R  Q  L  S  S  *  E  A  T  *  H  R  I  I  P  R  V  G  E  N  I  I  *  I  *  H  C  D  Q  C  A  V  *  E  T  E  Q  I  K  N  M  E  F  G  F  I  E  C  N  R  D  D  I  S  E  K  R  R  S  L  I  F  V  L  L  R  S  Q  G  W  T  S  S  S  P  P  A  R  L  Q  P  L  V  P  P  R  C  P  *  Y  M  E  R  A  S  I  C  Q  L  P  Q  T  G  V  G  L  C  K  I  F  Q  T  N  *  L  K  S  T  V  W  Q  V  K  R  C  Y  S  S  N  I  S  N  V  T  P  H  T  L  A  V  S  W  T  I  R  R  V  P  W  K  G  N  S  I  F  K  F  S  *  V  E  C  A  P  F  Q  D  *  I  V  G  T  I  F  A  A  L  Y  S  W  D  Y  L  E  S  L  H  Q  N  Y  C  N  V  V  H  Y  V  L  L  Y  S  *  R  E  Q  H  *  P   : K  K  Q  N   </second_frame>
            <third_frame>   A  P  F  L  V  F  Q  G  R  P  P  S  G  A  P  R  N  V  K  L  T  L  R  L  D  Q  M  D  W  S  S  A  Q  W  K  G  A  D  I  L  V  F  N  S  G  H  W  W  I  Y  E  K  T  I  R  E :   G  C  Y  F  Q  L  G  G  E  V  D  M  T  M  N  I  E  T  A  Y  R  R  S  I  S  T  L  V  D  W  I  G  H  E  V  N  M  T  K  T  H  V  V  F  R  T  Y  A  P  V  H  F  R :   G  G  D  W  K  T  G  G  N  C  H  L  E  K  L  P  N  I  G  S  S  Q  E  S  V  K  T  S  F  E  Y  N  T  V  I  N  V  L  S  E  K  Q  N  K  S  K  T  W  N  L  D  L  L  N  V  T  G  M  T  F  Q  R  R  D  G  H  S  S  L  Y  Y  L  G  P  K  V  G  P  A  P  L  H  R  Q  D  C  S  H  W  C  L  P  G  V  P  D  T  W  N  E  L  L  Y  A  N  F  L  K  R  E  L  G  C  A  K  F  S  K  Q  T  S  *  N  Q  R  C  G  R  *  R  D  V  I  A  P  T  F  Q  M  L  H  L  I  R  L  Q  C  H  G  L  *  D  V  Y  L  G  K  G  T  P  F  S  N  F  R  E  W  N  V  P  L  F  K  I  K  *  *  G  Q  F  L  Q  L  C  I  V  G  I  I  W  N  L  F  T  K  I  T  V  M  *  Y  I  M  C  C  C  I  A  E  E  N  N  I  N  L  :  K  N  K  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93957" stop="93791"/>
                    <exon start="92572" stop="92414"/>
                    <exon start="91220" stop="90854"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APFLVFQGRPPSGAPRNVKLTLRLDQMDWSSAQWKGADILVFNSGHWWIYEKTIREGCYFQLGGEVDMTMNIETAYRRSISTLVDWIGHEVNMTKTHVVFRTYAPVHFRGGDWKTGGNCHLEKLPNIGSSQESVKTSFEYNTVINVLSEKQNKSKTWNLDLLNVTGMTFQRRDGHSSLYYLGPKVGPAPLHRQDCSHWCLPGVPDTWNELLYANFLKRELGCAKFSKQTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="93959" e_stop="93791"/>
            <exon e_start="92572" e_stop="92414"/>
            <exon e_start="91220" e_stop="90449"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.991" e_score="0.982"/>
          <exon-intron don_prob="0.738" acc_prob="0.990" e_score="0.975"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="93959" e_stop="93791" e_length="169"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.991">
            <gDNA_intron_boundary i_start="93790" i_stop="92573" i_length="1218"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="92572" e_stop="92414" e_length="159"/>
          </exon>
          <intron i_serial="2" don_prob="0.738" acc_prob="0.990">
            <gDNA_intron_boundary i_start="92413" i_stop="91221" i_length="1193"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="91220" e_stop="90449" e_length="772"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93959" stop="93791"/>
              <exon start="92572" stop="92414"/>
              <exon start="91220" stop="90837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91164" stop="90449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91164" stop="90449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91163" stop="90674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309281" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGCTCCATTCCTAGTGTTTCAAGGTCGTCCACCTTCAGGGGCTCCCCGAAATGTTAAATTGACTTTGAGATTGGATCAGATGGATTGGAGCTCTGCTCAATGGAAAGGAGCAGATATTTTGGTATTCAACAGTGGTCACTGGTGGATTTATGAAAAAACTATTAGAGA : GGGATGTTACTTTCAACTAGGTGGAGAAGTCGATATGACGATGAATATTGAGACTGCATACAGGAGGTCAATATCGACATTGGTTGATTGGATAGGTCATGAAGTGAATATGACCAAGACACATGTCGTATTTCGAACTTATGCTCCTGTTCACTTTAG : AGGTGGAGACTGGAAGACTGGCGGCAACTGTCATCTTGAGAAGCTACCTAACATAGGATCATCCCAAGAGTCGGTGAAAACATCATTTGAATATAACACTGTGATCAATGTGCTGTCTGAGAAACAGAACAAATCAAAAACATGGAATTTGGATTTATTGAATGTAACAGGGATGACATTTCAGAGAAGAGACGGTCACTCATCTTTGTATTACTTAGGTCCCAAGGTTGGACCAGCTCCTCTCCACCGGCAAGACTGCAGCCACTGGTGCCTCCCCGGTGTCCCTGATACATGGAACGAGCTTCTATATGCCAACTTCCTCAAACGGGAGTTGGGTTGTGCAAAATTTTCCAAACAAACTAGTTAAAATCAACGGTGTGGCAGGTAAAGAGATGTTATAGCTCCAACATTTCAAATGTTACACCTCATACGCTTGCAGTGTCATGGACTATAAGACGTGTACCTTGGAAAGGGAACTCCATTTTCAAATTTTCGTGAGTGGAATGTGCCCCTTTTCAAGATTAAATAGTAGGGACAATTTTTGCAGCTTTGTATAGTTGGGATTATTTGGAATCTCTTCACCAAAATTACTGTAATGTAGTACATTATGTGTTGTTGTATAGCTGAAGAGAACAACATTAACCTAATTTTATACAAAATGACGAGCTTCCCCAATTGCAATATTGTACATTCCCTGTTTTTACGTTATGGACACAAACTGTTTTAACACTATAAATACAGAATGTCTTATTGTTATGTATTCGACGAGCGT</gDNA_template>
            <first_frame> E  L  H  S  *  C  F  K  V  V  H  L  Q  G  L  P  E  M  L  N  *  L  *  D  W  I  R  W  I  G  A  L  L  N  G  K  E  Q  I  F  W  Y  S  T  V  V  T  G  G  F  M  K  K  L  L  E   : R  D  V  T  F  N  *  V  E  K  S  I  *  R  *  I  L  R  L  H  T  G  G  Q  Y  R  H  W  L  I  G  *  V  M  K  *  I  *  P  R  H  M  S  Y  F  E  L  M  L  L  F  T  L   : E  V  E  T  G  R  L  A  A  T  V  I  L  R  S  Y  L  T  *  D  H  P  K  S  R  *  K  H  H  L  N  I  T  L  *  S  M  C  C  L  R  N  R  T  N  Q  K  H  G  I  W  I  Y  *  M  *  Q  G  *  H  F  R  E  E  T  V  T  H  L  C  I  T  *  V  P  R  L  D  Q  L  L  S  T  G  K  T  A  A  T  G  A  S  P  V  S  L  I  H  G  T  S  F  Y  M  P  T  S  S  N  G  S  W  V  V  Q  N  F  P  N  K  L  V  K  I  N  G  V  A  G  K  E  M  L  *  L  Q  H  F  K  C  Y  T  S  Y  A  C  S  V  M  D  Y  K  T  C  T  L  E  R  E  L  H  F  Q  I  F  V  S  G  M  C  P  F  S  R  L  N  S  R  D  N  F  C  S  F  V  *  L  G  L  F  G  I  S  S  P  K  L  L  *  C  S  T  L  C  V  V  V  *  L  K  R  T  T  L  T  *  F  Y  T  K  *  R  A  S  P  I  A  I  L  Y  I  P  C  F  Y  V  M  D  T  N  C  F  N  T  I  N  T  E  C  L  I  V  M  Y  S  T  S   </first_frame>
            <second_frame>  S  S  I  P  S  V  S  R  S  S  T  F  R  G  S  P  K  C  *  I  D  F  E  I  G  S  D  G  L  E  L  C  S  M  E  R  S  R  Y  F  G  I  Q  Q  W  S  L  V  D  L  *  K  N  Y  *  R  :  G  M  L  L  S  T  R  W  R  S  R  Y  D  D  E  Y  *  D  C  I  Q  E  V  N  I  D  I  G  *  L  D  R  S  *  S  E  Y  D  Q  D  T  C  R  I  S  N  L  C  S  C  S  L  *  :  R  W  R  L  E  D  W  R  Q  L  S  S  *  E  A  T  *  H  R  I  I  P  R  V  G  E  N  I  I  *  I  *  H  C  D  Q  C  A  V  *  E  T  E  Q  I  K  N  M  E  F  G  F  I  E  C  N  R  D  D  I  S  E  K  R  R  S  L  I  F  V  L  L  R  S  Q  G  W  T  S  S  S  P  P  A  R  L  Q  P  L  V  P  P  R  C  P  *  Y  M  E  R  A  S  I  C  Q  L  P  Q  T  G  V  G  L  C  K  I  F  Q  T  N  *  L  K  S  T  V  W  Q  V  K  R  C  Y  S  S  N  I  S  N  V  T  P  H  T  L  A  V  S  W  T  I  R  R  V  P  W  K  G  N  S  I  F  K  F  S  *  V  E  C  A  P  F  Q  D  *  I  V  G  T  I  F  A  A  L  Y  S  W  D  Y  L  E  S  L  H  Q  N  Y  C  N  V  V  H  Y  V  L  L  Y  S  *  R  E  Q  H  *  P  N  F  I  Q  N  D  E  L  P  Q  L  Q  Y  C  T  F  P  V  F  T  L  W  T  Q  T  V  L  T  L  *  I  Q  N  V  L  L  L  C  I  R  R  A  </second_frame>
            <third_frame>   A  P  F  L  V  F  Q  G  R  P  P  S  G  A  P  R  N  V  K  L  T  L  R  L  D  Q  M  D  W  S  S  A  Q  W  K  G  A  D  I  L  V  F  N  S  G  H  W  W  I  Y  E  K  T  I  R  E :   G  C  Y  F  Q  L  G  G  E  V  D  M  T  M  N  I  E  T  A  Y  R  R  S  I  S  T  L  V  D  W  I  G  H  E  V  N  M  T  K  T  H  V  V  F  R  T  Y  A  P  V  H  F  R :   G  G  D  W  K  T  G  G  N  C  H  L  E  K  L  P  N  I  G  S  S  Q  E  S  V  K  T  S  F  E  Y  N  T  V  I  N  V  L  S  E  K  Q  N  K  S  K  T  W  N  L  D  L  L  N  V  T  G  M  T  F  Q  R  R  D  G  H  S  S  L  Y  Y  L  G  P  K  V  G  P  A  P  L  H  R  Q  D  C  S  H  W  C  L  P  G  V  P  D  T  W  N  E  L  L  Y  A  N  F  L  K  R  E  L  G  C  A  K  F  S  K  Q  T  S  *  N  Q  R  C  G  R  *  R  D  V  I  A  P  T  F  Q  M  L  H  L  I  R  L  Q  C  H  G  L  *  D  V  Y  L  G  K  G  T  P  F  S  N  F  R  E  W  N  V  P  L  F  K  I  K  *  *  G  Q  F  L  Q  L  C  I  V  G  I  I  W  N  L  F  T  K  I  T  V  M  *  Y  I  M  C  C  C  I  A  E  E  N  N  I  N  L  I  L  Y  K  M  T  S  F  P  N  C  N  I  V  H  S  L  F  L  R  Y  G  H  K  L  F  *  H  Y  K  Y  R  M  S  Y  C  Y  V  F  D  E  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93957" stop="93791"/>
                    <exon start="92572" stop="92414"/>
                    <exon start="91220" stop="90854"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APFLVFQGRPPSGAPRNVKLTLRLDQMDWSSAQWKGADILVFNSGHWWIYEKTIREGCYFQLGGEVDMTMNIETAYRRSISTLVDWIGHEVNMTKTHVVFRTYAPVHFRGGDWKTGGNCHLEKLPNIGSSQESVKTSFEYNTVINVLSEKQNKSKTWNLDLLNVTGMTFQRRDGHSSLYYLGPKVGPAPLHRQDCSHWCLPGVPDTWNELLYANFLKRELGCAKFSKQTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="95167" PGL_stop="93969"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95167" e_stop="94645"/>
            <exon e_start="94180" e_stop="93969"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.928" e_score="0.983"/>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="95167" e_stop="94645" e_length="523"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.928">
            <gDNA_intron_boundary i_start="94644" i_stop="94181" i_length="464"/>
          </intron>
          <exon e_serial="2" e_score="0.934">
            <gDNA_exon_boundary e_start="94180" e_stop="93969" e_length="212"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95167" stop="94645"/>
              <exon start="94180" stop="94144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95086" stop="94645"/>
              <exon start="94180" stop="93969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561385" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATATTCAATTTTTTTTTTTGATAGTCTCCATCCCAAGACTGCATTTTTCTCTACACCCACTACTACTTCTTTAGTCTAAAGCAGAGATGAGTGAAAACCCACCTCCCAGATTCTTCAACACAATGACCCATTTGAAGATTTTCAAGAAACTCAAGCCTTTTGAGCCTTCACCAGGTGTTCTTGGCTGCTTCTTTTTCACCGTTTGCTTATTCTTGTATCTCTTCTTGTTGGATTATACAACAGTAAACAAAGTGCCTCGGTTGCATCAGCCATCCTTGTTAGCTACTTGGGTTGGGATAAATGGATCATCTTTGTCCTATAACAAGGTTGATTTTTTGGGAAGAGGTGCAGAAAGTTGTGATATTTTCGATGGAAATTGGGTTTGGGATGAAAGATATCCACTTTATGAATCAAAGGATTGTAATTTCTTGGATGAAGGCTTTCGTTGTTCTGAGAATGGTAGGCCTGACAATTTCTATACTAAATGGCGTTGGCAACCTAAAGATTGCAACTTGCCCAG : ATTCGATGCAAAATCTATGTTAGAAAAGTTGCGAAACAGACGGGTTGTGTTTGTCGGAGATTCAATTGGAAGAAACCAGTGGGAGTCTCTACTCTGCATGTTATCTTCTGCTGTTCCTGACAAAAGCAAGATATATGAAGTTAATGGAAATCCTATCACGAAGCACATGGGTTTTTTGATTTTTATGTTCAAGGATTTCAACTGCACTATTG</gDNA_template>
            <first_frame> K  I  F  N  F  F  F  *  *  S  P  S  Q  D  C  I  F  L  Y  T  H  Y  Y  F  F  S  L  K  Q  R  *  V  K  T  H  L  P  D  S  S  T  Q  *  P  I  *  R  F  S  R  N  S  S  L  L  S  L  H  Q  V  F  L  A  A  S  F  S  P  F  A  Y  S  C  I  S  S  C  W  I  I  Q  Q  *  T  K  C  L  G  C  I  S  H  P  C  *  L  L  G  L  G  *  M  D  H  L  C  P  I  T  R  L  I  F  W  E  E  V  Q  K  V  V  I  F  S  M  E  I  G  F  G  M  K  D  I  H  F  M  N  Q  R  I  V  I  S  W  M  K  A  F  V  V  L  R  M  V  G  L  T  I  S  I  L  N  G  V  G  N  L  K  I  A  T  C  P   : D  S  M  Q  N  L  C  *  K  S  C  E  T  D  G  L  C  L  S  E  I  Q  L  E  E  T  S  G  S  L  Y  S  A  C  Y  L  L  L  F  L  T  K  A  R  Y  M  K  L  M  E  I  L  S  R  S  T  W  V  F  *  F  L  C  S  R  I  S  T  A  L  L </first_frame>
            <second_frame>  K  Y  S  I  F  F  F  D  S  L  H  P  K  T  A  F  F  S  T  P  T  T  T  S  L  V  *  S  R  D  E  *  K  P  T  S  Q  I  L  Q  H  N  D  P  F  E  D  F  Q  E  T  Q  A  F  *  A  F  T  R  C  S  W  L  L  L  F  H  R  L  L  I  L  V  S  L  L  V  G  L  Y  N  S  K  Q  S  A  S  V  A  S  A  I  L  V  S  Y  L  G  W  D  K  W  I  I  F  V  L  *  Q  G  *  F  F  G  K  R  C  R  K  L  *  Y  F  R  W  K  L  G  L  G  *  K  I  S  T  L  *  I  K  G  L  *  F  L  G  *  R  L  S  L  F  *  E  W  *  A  *  Q  F  L  Y  *  M  A  L  A  T  *  R  L  Q  L  A  Q  :  I  R  C  K  I  Y  V  R  K  V  A  K  Q  T  G  C  V  C  R  R  F  N  W  K  K  P  V  G  V  S  T  L  H  V  I  F  C  C  S  *  Q  K  Q  D  I  *  S  *  W  K  S  Y  H  E  A  H  G  F  F  D  F  Y  V  Q  G  F  Q  L  H  Y   </second_frame>
            <third_frame>   N  I  Q  F  F  F  L  I  V  S  I  P  R  L  H  F  S  L  H  P  L  L  L  L  *  S  K  A  E  M  S  E  N  P  P  P  R  F  F  N  T  M  T  H  L  K  I  F  K  K  L  K  P  F  E  P  S  P  G  V  L  G  C  F  F  F  T  V  C  L  F  L  Y  L  F  L  L  D  Y  T  T  V  N  K  V  P  R  L  H  Q  P  S  L  L  A  T  W  V  G  I  N  G  S  S  L  S  Y  N  K  V  D  F  L  G  R  G  A  E  S  C  D  I  F  D  G  N  W  V  W  D  E  R  Y  P  L  Y  E  S  K  D  C  N  F  L  D  E  G  F  R  C  S  E  N  G  R  P  D  N  F  Y  T  K  W  R  W  Q  P  K  D  C  N  L  P  R :   F  D  A  K  S  M  L  E  K  L  R  N  R  R  V  V  F  V  G  D  S  I  G  R  N  Q  W  E  S  L  L  C  M  L  S  S  A  V  P  D  K  S  K  I  Y  E  V  N  G  N  P  I  T  K  H  M  G  F  L  I  F  M  F  K  D  F  N  C  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95090" stop="94645"/>
                    <exon start="94180" stop="93970"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKAEMSENPPPRFFNTMTHLKIFKKLKPFEPSPGVLGCFFFTVCLFLYLFLLDYTTVNKVPRLHQPSLLATWVGINGSSLSYNKVDFLGRGAESCDIFDGNWVWDERYPLYESKDCNFLDEGFRCSENGRPDNFYTKWRWQPKDCNLPRFDAKSMLEKLRNRRVVFVGDSIGRNQWESLLCMLSSAVPDKSKIYEVNGNPITKHMGFLIFMFKDFNCTI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="95999" PGL_stop="95237"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95999" e_stop="95237"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="95999" e_stop="95237" e_length="763"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95999" stop="95237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATTCTCATAATCTCACCATGATTTGTGGGCTTCATAAATCACATCACAACACTAATTAATCTTTGTTGTCACTTCTCCAACACTCAACCACAAATCTCTAGTCTTAATGACAAAAGAGTGATTTCATTTATTTGTAAGTAAATATTTTACTACTTGTATGTCCAAATCCGAAATTTCAATTATCATAACAAAAAAGGAATACTGAATAGTTGAGAAAAAAAAATGCTACTACTGCTATTCAGATAAAATTGAAATTCAATCAAATCTACGGGGCTTAGTTAATAGGTGCAAATCGCGATGCGTAGCTCTCTTTCAACTACATTAAACTCATTGGGAGTGGTCTCCCAATAGTAAATCTTTTTTGGGGGTGAATTTATTAATCAATTCTCATTTCCATACTTTCTAACCAACTAATTAACAACCATTTAATTTAACATTTGTGAATTTAGAGAGAAAATGAAGTGAAATTTGTTGACATCCCACGTTGAGCCCACGTTCCCATAGATTCTCTCTTAAGCCTCACGGCGGTTTCACCGTCCTTGTACCCTTTTCCGACATCTCCGCCACAAATCTTTTGGTATTTCCCTCTGTTGTCGGTTTCTTCAAAAACTCACTTCTTCTTCTTCTTCAATATTAATTACTACTCCTGGTCCCTATTTGCCATTTTAGACTACTACTTGTTTGTCTTTAACTTTGTCCATACAAGACCCCACCTCATCATCATCAACAACATCTTCCTCTACTCATTTACTCTCTTTCTC</gDNA_template>
            <first_frame> *  F  S  *  S  H  H  D  L  W  A  S  *  I  T  S  Q  H  *  L  I  F  V  V  T  S  P  T  L  N  H  K  S  L  V  L  M  T  K  E  *  F  H  L  F  V  S  K  Y  F  T  T  C  M  S  K  S  E  I  S  I  I  I  T  K  K  E  Y  *  I  V  E  K  K  K  C  Y  Y  C  Y  S  D  K  I  E  I  Q  S  N  L  R  G  L  V  N  R  C  K  S  R  C  V  A  L  F  Q  L  H  *  T  H  W  E  W  S  P  N  S  K  S  F  L  G  V  N  L  L  I  N  S  H  F  H  T  F  *  P  T  N  *  Q  P  F  N  L  T  F  V  N  L  E  R  K  *  S  E  I  C  *  H  P  T  L  S  P  R  S  H  R  F  S  L  K  P  H  G  G  F  T  V  L  V  P  F  S  D  I  S  A  T  N  L  L  V  F  P  S  V  V  G  F  F  K  N  S  L  L  L  L  L  Q  Y  *  L  L  L  L  V  P  I  C  H  F  R  L  L  L  V  C  L  *  L  C  P  Y  K  T  P  P  H  H  H  Q  Q  H  L  P  L  L  I  Y  S  L  S  </first_frame>
            <second_frame>  N  S  H  N  L  T  M  I  C  G  L  H  K  S  H  H  N  T  N  *  S  L  L  S  L  L  Q  H  S  T  T  N  L  *  S  *  *  Q  K  S  D  F  I  Y  L  *  V  N  I  L  L  L  V  C  P  N  P  K  F  Q  L  S  *  Q  K  R  N  T  E  *  L  R  K  K  N  A  T  T  A  I  Q  I  K  L  K  F  N  Q  I  Y  G  A  *  L  I  G  A  N  R  D  A  *  L  S  F  N  Y  I  K  L  I  G  S  G  L  P  I  V  N  L  F  W  G  *  I  Y  *  S  I  L  I  S  I  L  S  N  Q  L  I  N  N  H  L  I  *  H  L  *  I  *  R  E  N  E  V  K  F  V  D  I  P  R  *  A  H  V  P  I  D  S  L  L  S  L  T  A  V  S  P  S  L  Y  P  F  P  T  S  P  P  Q  I  F  W  Y  F  P  L  L  S  V  S  S  K  T  H  F  F  F  F  F  N  I  N  Y  Y  S  W  S  L  F  A  I  L  D  Y  Y  L  F  V  F  N  F  V  H  T  R  P  H  L  I  I  I  N  N  I  F  L  Y  S  F  T  L  F  L </second_frame>
            <third_frame>   I  L  I  I  S  P  *  F  V  G  F  I  N  H  I  T  T  L  I  N  L  C  C  H  F  S  N  T  Q  P  Q  I  S  S  L  N  D  K  R  V  I  S  F  I  C  K  *  I  F  Y  Y  L  Y  V  Q  I  R  N  F  N  Y  H  N  K  K  G  I  L  N  S  *  E  K  K  M  L  L  L  L  F  R  *  N  *  N  S  I  K  S  T  G  L  S  *  *  V  Q  I  A  M  R  S  S  L  S  T  T  L  N  S  L  G  V  V  S  Q  *  *  I  F  F  G  G  E  F  I  N  Q  F  S  F  P  Y  F  L  T  N  *  L  T  T  I  *  F  N  I  C  E  F  R  E  K  M  K  *  N  L  L  T  S  H  V  E  P  T  F  P  *  I  L  S  *  A  S  R  R  F  H  R  P  C  T  L  F  R  H  L  R  H  K  S  F  G  I  S  L  C  C  R  F  L  Q  K  L  T  S  S  S  S  S  I  L  I  T  T  P  G  P  Y  L  P  F  *  T  T  T  C  L  S  L  T  L  S  I  Q  D  P  T  S  S  S  S  T  T  S  S  S  T  H  L  L  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95509" stop="95237"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AHVPIDSLLSLTAVSPSLYPFPTSPPQIFWYFPLLSVSSKTHFFFFFNINYYSWSLFAILDYYLFVFNFVHTRPHLIIINNIFLYSFTLFL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="96664" PGL_stop="96183"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96664" e_stop="96183"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96664" e_stop="96183" e_length="482"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96664" stop="96183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349747" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGGTGCTTGTGGTCTCTTTCAATGGCGAAGAATAACTCGTTGAAGTCGACCGCAGTGGTATTCGGAGCCCTAGCATTTGGGTGGCTGGCGATTGAGCTTGCTTTCAAACCATGGCTTGATAAAGCCCGAGCTTCCATGGACAAGTCTGACCCATCTCGCGACCCCGACGATCAAAGTTGCAAGTCTCAGGTCGATGTTGATCCGAACAACTGATTTGATTTTTGGGTTCTAAACCCCAAAATCCAATATATGTGCTTGAATTTTACTTCATAATAAATAATTATGACTTGTTAATTTCTGTTTTTCTTCAGTTTCTAGCCGTCCCTGTATTTTATTTTGTTGGTTAAAGTGAAAGGAAATTGGTAGAAGTTTAATACAATTCAAGAGGTAAGTTCAAGATAATTGTTCCGTTTTTATATTTCTGTTTCAAGGGTCCATTTGTATTTGTATTTTATACTCAAAATGGAGATTTTGACATTTA</gDNA_template>
            <first_frame> R  V  L  V  V  S  F  N  G  E  E  *  L  V  E  V  D  R  S  G  I  R  S  P  S  I  W  V  A  G  D  *  A  C  F  Q  T  M  A  *  *  S  P  S  F  H  G  Q  V  *  P  I  S  R  P  R  R  S  K  L  Q  V  S  G  R  C  *  S  E  Q  L  I  *  F  L  G  S  K  P  Q  N  P  I  Y  V  L  E  F  Y  F  I  I  N  N  Y  D  L  L  I  S  V  F  L  Q  F  L  A  V  P  V  F  Y  F  V  G  *  S  E  R  K  L  V  E  V  *  Y  N  S  R  G  K  F  K  I  I  V  P  F  L  Y  F  C  F  K  G  P  F  V  F  V  F  Y  T  Q  N  G  D  F  D  I   </first_frame>
            <second_frame>  G  C  L  W  S  L  S  M  A  K  N  N  S  L  K  S  T  A  V  V  F  G  A  L  A  F  G  W  L  A  I  E  L  A  F  K  P  W  L  D  K  A  R  A  S  M  D  K  S  D  P  S  R  D  P  D  D  Q  S  C  K  S  Q  V  D  V  D  P  N  N  *  F  D  F  W  V  L  N  P  K  I  Q  Y  M  C  L  N  F  T  S  *  *  I  I  M  T  C  *  F  L  F  F  F  S  F  *  P  S  L  Y  F  I  L  L  V  K  V  K  G  N  W  *  K  F  N  T  I  Q  E  V  S  S  R  *  L  F  R  F  Y  I  S  V  S  R  V  H  L  Y  L  Y  F  I  L  K  M  E  I  L  T  F  </second_frame>
            <third_frame>   G  A  C  G  L  F  Q  W  R  R  I  T  R  *  S  R  P  Q  W  Y  S  E  P  *  H  L  G  G  W  R  L  S  L  L  S  N  H  G  L  I  K  P  E  L  P  W  T  S  L  T  H  L  A  T  P  T  I  K  V  A  S  L  R  S  M  L  I  R  T  T  D  L  I  F  G  F  *  T  P  K  S  N  I  C  A  *  I  L  L  H  N  K  *  L  *  L  V  N  F  C  F  S  S  V  S  S  R  P  C  I  L  F  C  W  L  K  *  K  E  I  G  R  S  L  I  Q  F  K  R  *  V  Q  D  N  C  S  V  F  I  F  L  F  Q  G  S  I  C  I  C  I  L  Y  S  K  W  R  F  *  H  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96663" stop="96451"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCLWSLSMAKNNSLKSTAVVFGALAFGWLAIELAFKPWLDKARASMDKSDPSRDPDDQSCKSQVDVDPNN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="99940" PGL_stop="97013"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99940" e_stop="99867"/>
            <exon e_start="99785" e_stop="99709"/>
            <exon e_start="97710" e_stop="97519"/>
            <exon e_start="97397" e_stop="97013"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.346" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99940" e_stop="99867" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.346" acc_prob="1.000">
            <gDNA_intron_boundary i_start="99866" i_stop="99786" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99785" e_stop="99709" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.945">
            <gDNA_intron_boundary i_start="99708" i_stop="97711" i_length="1998"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97710" e_stop="97519" e_length="192"/>
          </exon>
          <intron i_serial="3" don_prob="0.915" acc_prob="0.998">
            <gDNA_intron_boundary i_start="97518" i_stop="97398" i_length="121"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="97397" e_stop="97013" e_length="385"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99940" stop="99867"/>
              <exon start="99785" stop="99709"/>
              <exon start="97710" stop="97519"/>
              <exon start="97397" stop="97013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539989" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99923" stop="99867"/>
              <exon start="99785" stop="99709"/>
              <exon start="97710" stop="97519"/>
              <exon start="97397" stop="97162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99914" stop="99867"/>
              <exon start="99785" stop="99709"/>
              <exon start="97710" stop="97519"/>
              <exon start="97397" stop="97016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99914" stop="99867"/>
              <exon start="99785" stop="99709"/>
              <exon start="97710" stop="97519"/>
              <exon start="97397" stop="97190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99905" stop="99867"/>
              <exon start="99785" stop="99709"/>
              <exon start="97710" stop="97519"/>
              <exon start="97397" stop="97179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99905" stop="99867"/>
              <exon start="99785" stop="99709"/>
              <exon start="97710" stop="97519"/>
              <exon start="97397" stop="97204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593806" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99905" stop="99867"/>
              <exon start="99785" stop="99709"/>
              <exon start="97710" stop="97519"/>
              <exon start="97397" stop="97204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99899" stop="99867"/>
              <exon start="99785" stop="99709"/>
              <exon start="97710" stop="97519"/>
              <exon start="97397" stop="97206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99897" stop="99867"/>
              <exon start="99785" stop="99709"/>
              <exon start="97710" stop="97519"/>
              <exon start="97397" stop="97180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99894" stop="99867"/>
              <exon start="99785" stop="99709"/>
              <exon start="97710" stop="97519"/>
              <exon start="97397" stop="97078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99885" stop="99867"/>
              <exon start="99785" stop="99709"/>
              <exon start="97710" stop="97519"/>
              <exon start="97397" stop="97162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99885" stop="99867"/>
              <exon start="99785" stop="99709"/>
              <exon start="97710" stop="97519"/>
              <exon start="97397" stop="97171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99885" stop="99867"/>
              <exon start="99785" stop="99709"/>
              <exon start="97710" stop="97519"/>
              <exon start="97397" stop="97174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99885" stop="99867"/>
              <exon start="99785" stop="99709"/>
              <exon start="97710" stop="97519"/>
              <exon start="97397" stop="97189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99885" stop="99867"/>
              <exon start="99785" stop="99709"/>
              <exon start="97710" stop="97519"/>
              <exon start="97397" stop="97191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99783" stop="99709"/>
              <exon start="97710" stop="97519"/>
              <exon start="97397" stop="97185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99771" stop="99709"/>
              <exon start="97710" stop="97519"/>
              <exon start="97397" stop="97240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97709" stop="97519"/>
              <exon start="97397" stop="97175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596594" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97703" stop="97519"/>
              <exon start="97397" stop="97173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97699" stop="97519"/>
              <exon start="97397" stop="97204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97650" stop="97519"/>
              <exon start="97397" stop="97013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97562" stop="97519"/>
              <exon start="97397" stop="97175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97522" stop="97519"/>
              <exon start="97397" stop="97013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288598" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCGTGTTCGATCTGCGCTTCGACTTAAGCCCTAGCGTCTCTTCAATTTCTTCAGCAACAATGAAGCTCGTTAG : ATTTTTGATGAAGCTGAACAACGAGACTGTCTCAATTGAGCTCAAAAACGGCACCGTTGTTCATGGAACCATTACAG : GTGTGGATGTTAGCATGAACACACATCTGAAGGCTGTCAAAATTACGCTAAAAGGGAAGAATCCAGTGACGCTGGATCACCTGAGTGTGAGGGGTAACAACATCCGTTATTACATCCTCCCTGACAGCTTAAATCTTGAGACACTGCTGGTGGAAGAAACACCTAGGGTGAAGCCAAAGAAGCCAACAGCTG : GAAAGCCTATGGGACGTGGTCGTGGGCGCGGTCGTGGGCGTGGACGTGGTCGAGGCCGCTAAATGCATTCCAGCTGCTCTTAATTTTTGCAGTGTTGCCTATGTAAACATGTGTACGGATGGAGAGATTTGCTCTTAGTTTTTCCCAGTAGAAAAAAGATGGATCTCATGCACAATTTATTTTGGATCTTTGAAGTCAGGAGCATGTTATCTCGTTGCATCATATTGTCTGCTAACGTTACTTTTGTATCGTGTACAATTATGTTCTTCCTTGTCAAGTTACTCAACTAAATTGGTCACTTCAGCATCTATACTCTGAGTAAAGTGACATAGAATTATATTTGGACCAAATTGGGAATTGAGATAAATAAATATTAAGTTTGATG</gDNA_template>
            <first_frame> V  V  F  D  L  R  F  D  L  S  P  S  V  S  S  I  S  S  A  T  M  K  L  V  R :   F  L  M  K  L  N  N  E  T  V  S  I  E  L  K  N  G  T  V  V  H  G  T  I  T   : G  V  D  V  S  M  N  T  H  L  K  A  V  K  I  T  L  K  G  K  N  P  V  T  L  D  H  L  S  V  R  G  N  N  I  R  Y  Y  I  L  P  D  S  L  N  L  E  T  L  L  V  E  E  T  P  R  V  K  P  K  K  P  T  A   : G  K  P  M  G  R  G  R  G  R  G  R  G  R  G  R  G  R  G  R  *  M  H  S  S  C  S  *  F  L  Q  C  C  L  C  K  H  V  Y  G  W  R  D  L  L  L  V  F  P  S  R  K  K  M  D  L  M  H  N  L  F  W  I  F  E  V  R  S  M  L  S  R  C  I  I  L  S  A  N  V  T  F  V  S  C  T  I  M  F  F  L  V  K  L  L  N  *  I  G  H  F  S  I  Y  T  L  S  K  V  T  *  N  Y  I  W  T  K  L  G  I  E  I  N  K  Y  *  V  *   </first_frame>
            <second_frame>  S  C  S  I  C  A  S  T  *  A  L  A  S  L  Q  F  L  Q  Q  Q  *  S  S  L   : D  F  *  *  S  *  T  T  R  L  S  Q  L  S  S  K  T  A  P  L  F  M  E  P  L  Q  :  V  W  M  L  A  *  T  H  I  *  R  L  S  K  L  R  *  K  G  R  I  Q  *  R  W  I  T  *  V  *  G  V  T  T  S  V  I  T  S  S  L  T  A  *  I  L  R  H  C  W  W  K  K  H  L  G  *  S  Q  R  S  Q  Q  L  :  E  S  L  W  D  V  V  V  G  A  V  V  G  V  D  V  V  E  A  A  K  C  I  P  A  A  L  N  F  C  S  V  A  Y  V  N  M  C  T  D  G  E  I  C  S  *  F  F  P  V  E  K  R  W  I  S  C  T  I  Y  F  G  S  L  K  S  G  A  C  Y  L  V  A  S  Y  C  L  L  T  L  L  L  Y  R  V  Q  L  C  S  S  L  S  S  Y  S  T  K  L  V  T  S  A  S  I  L  *  V  K  *  H  R  I  I  F  G  P  N  W  E  L  R  *  I  N  I  K  F  D  </second_frame>
            <third_frame>   R  V  R  S  A  L  R  L  K  P  *  R  L  F  N  F  F  S  N  N  E  A  R  *  :  I  F  D  E  A  E  Q  R  D  C  L  N  *  A  Q  K  R  H  R  C  S  W  N  H  Y  R :   C  G  C  *  H  E  H  T  S  E  G  C  Q  N  Y  A  K  R  E  E  S  S  D  A  G  S  P  E  C  E  G  *  Q  H  P  L  L  H  P  P  *  Q  L  K  S  *  D  T  A  G  G  R  N  T  *  G  E  A  K  E  A  N  S  W :   K  A  Y  G  T  W  S  W  A  R  S  W  A  W  T  W  S  R  P  L  N  A  F  Q  L  L  L  I  F  A  V  L  P  M  *  T  C  V  R  M  E  R  F  A  L  S  F  S  Q  *  K  K  D  G  S  H  A  Q  F  I  L  D  L  *  S  Q  E  H  V  I  S  L  H  H  I  V  C  *  R  Y  F  C  I  V  Y  N  Y  V  L  P  C  Q  V  T  Q  L  N  W  S  L  Q  H  L  Y  S  E  *  S  D  I  E  L  Y  L  D  Q  I  G  N  *  D  K  *  I  L  S  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99940" stop="99867"/>
                    <exon start="99785" stop="99709"/>
                    <exon start="97710" stop="97519"/>
                    <exon start="97397" stop="97336"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVFDLRFDLSPSVSSISSATMKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKAVKITLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPMGRGRGRGRGRGRGRGR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97314" stop="97108"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLQCCLCKHVYGWRDLLLVFPSRKKMDLMHNLFWIFEVRSMLSRCIILSANVTFVSCTIMFFLVKLLN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="101160" PGL_stop="101937"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101160" e_stop="101937"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="101160" e_stop="101937" e_length="778"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101160" stop="101937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730376" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGCACGTAGCCAGGTATTTATCCCTTTATTTAAGTCTATCCACATTCTCGTCGGAAAGTAAGTATGAGTGACAATCGGAGTCAAAGACGGCGAGTTGGAGAGTCGTCCGAATCGGAAGATTCTGGAATTTACAATGAGAGGATTCTTATCTTGGTGTTTGCCTCAATGAATTGGGATATTCCTACACTATGTCGAACAGCCTCGGTAAATAGGAAACTACGTGCAGTTGCGAGAAGGATTCTATGGAAAGAGCTTTGCGTGTATCGAGCTCCGCAAATGATAACGGCCTTAACGGACGGCGGTAGAATTGGCGGCGGATGGCAGGCGATGGCAAAATTGATGTTCTTCTGCAATGGATGTCAATCGACCCGGCATTTCCAAGTGTGCCGACCGGAAGCGGGTCACTTCGTGAAAACATCCCGGTTTTCGAAGACATCCGGTCGGAGTTTTTTGGTGAAGAAATGTACAAGTGATTTGCTGTACGTGAGTGATCCGTGTGAACATTCAACTGGGAGCGATGATTTGGGGCTTTTCAGAGGGGTATTTTGGGGGTTTATGAAATCTAGGACAAGGGCGAGTTTGATCAGAAGACGAGTGGAGCTTGAAGAAGGAGCCAAGTGTCCATTCTGTCGTGCTCGGGTTTGGAGTATGACGGCGGCTCGGCTCATACCCAAAAGTGCGGCGCGGCGGCTTGGTTCGATGGAGAGTGGATTGGAGTACTTTGTATGTGTTAATGGGCACTTATATGGTGCTTGTTGGCTGGTTCCTTTATCGTCT</gDNA_template>
            <first_frame> K  H  V  A  R  Y  L  S  L  Y  L  S  L  S  T  F  S  S  E  S  K  Y  E  *  Q  S  E  S  K  T  A  S  W  R  V  V  R  I  G  R  F  W  N  L  Q  *  E  D  S  Y  L  G  V  C  L  N  E  L  G  Y  S  Y  T  M  S  N  S  L  G  K  *  E  T  T  C  S  C  E  K  D  S  M  E  R  A  L  R  V  S  S  S  A  N  D  N  G  L  N  G  R  R  *  N  W  R  R  M  A  G  D  G  K  I  D  V  L  L  Q  W  M  S  I  D  P  A  F  P  S  V  P  T  G  S  G  S  L  R  E  N  I  P  V  F  E  D  I  R  S  E  F  F  G  E  E  M  Y  K  *  F  A  V  R  E  *  S  V  *  T  F  N  W  E  R  *  F  G  A  F  Q  R  G  I  L  G  V  Y  E  I  *  D  K  G  E  F  D  Q  K  T  S  G  A  *  R  R  S  Q  V  S  I  L  S  C  S  G  L  E  Y  D  G  G  S  A  H  T  Q  K  C  G  A  A  A  W  F  D  G  E  W  I  G  V  L  C  M  C  *  W  A  L  I  W  C  L  L  A  G  S  F  I  V  </first_frame>
            <second_frame>  S  T  *  P  G  I  Y  P  F  I  *  V  Y  P  H  S  R  R  K  V  S  M  S  D  N  R  S  Q  R  R  R  V  G  E  S  S  E  S  E  D  S  G  I  Y  N  E  R  I  L  I  L  V  F  A  S  M  N  W  D  I  P  T  L  C  R  T  A  S  V  N  R  K  L  R  A  V  A  R  R  I  L  W  K  E  L  C  V  Y  R  A  P  Q  M  I  T  A  L  T  D  G  G  R  I  G  G  G  W  Q  A  M  A  K  L  M  F  F  C  N  G  C  Q  S  T  R  H  F  Q  V  C  R  P  E  A  G  H  F  V  K  T  S  R  F  S  K  T  S  G  R  S  F  L  V  K  K  C  T  S  D  L  L  Y  V  S  D  P  C  E  H  S  T  G  S  D  D  L  G  L  F  R  G  V  F  W  G  F  M  K  S  R  T  R  A  S  L  I  R  R  R  V  E  L  E  E  G  A  K  C  P  F  C  R  A  R  V  W  S  M  T  A  A  R  L  I  P  K  S  A  A  R  R  L  G  S  M  E  S  G  L  E  Y  F  V  C  V  N  G  H  L  Y  G  A  C  W  L  V  P  L  S  S </second_frame>
            <third_frame>   A  R  S  Q  V  F  I  P  L  F  K  S  I  H  I  L  V  G  K  *  V  *  V  T  I  G  V  K  D  G  E  L  E  S  R  P  N  R  K  I  L  E  F  T  M  R  G  F  L  S  W  C  L  P  Q  *  I  G  I  F  L  H  Y  V  E  Q  P  R  *  I  G  N  Y  V  Q  L  R  E  G  F  Y  G  K  S  F  A  C  I  E  L  R  K  *  *  R  P  *  R  T  A  V  E  L  A  A  D  G  R  R  W  Q  N  *  C  S  S  A  M  D  V  N  R  P  G  I  S  K  C  A  D  R  K  R  V  T  S  *  K  H  P  G  F  R  R  H  P  V  G  V  F  W  *  R  N  V  Q  V  I  C  C  T  *  V  I  R  V  N  I  Q  L  G  A  M  I  W  G  F  S  E  G  Y  F  G  G  L  *  N  L  G  Q  G  R  V  *  S  E  D  E  W  S  L  K  K  E  P  S  V  H  S  V  V  L  G  F  G  V  *  R  R  L  G  S  Y  P  K  V  R  R  G  G  L  V  R  W  R  V  D  W  S  T  L  Y  V  L  M  G  T  Y  M  V  L  V  G  W  F  L  Y  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101194" stop="101937"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYPHSRRKVSMSDNRSQRRRVGESSESEDSGIYNERILILVFASMNWDIPTLCRTASVNRKLRAVARRILWKELCVYRAPQMITALTDGGRIGGGWQAMAKLMFFCNGCQSTRHFQVCRPEAGHFVKTSRFSKTSGRSFLVKKCTSDLLYVSDPCEHSTGSDDLGLFRGVFWGFMKSRTRASLIRRRVELEEGAKCPFCRARVWSMTAARLIPKSAARRLGSMESGLEYFVCVNGHLYGACWLVPLSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="112321" PGL_stop="108795"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112321" e_stop="112200"/>
            <exon e_start="111557" e_stop="111493"/>
            <exon e_start="111274" e_stop="111116"/>
            <exon e_start="109123" e_stop="108795"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.753" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.907" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112321" e_stop="112200" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.753" acc_prob="0.995">
            <gDNA_intron_boundary i_start="112199" i_stop="111558" i_length="642"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111557" e_stop="111493" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.943">
            <gDNA_intron_boundary i_start="111492" i_stop="111275" i_length="218"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111274" e_stop="111116" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.907" acc_prob="0.995">
            <gDNA_intron_boundary i_start="111115" i_stop="109124" i_length="1992"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="109123" e_stop="108795" e_length="329"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112321" stop="112200"/>
              <exon start="111557" stop="111493"/>
              <exon start="111274" stop="111116"/>
              <exon start="109123" stop="108795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112321" stop="112200"/>
              <exon start="111557" stop="111493"/>
              <exon start="111274" stop="111116"/>
              <exon start="109123" stop="108795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112320" stop="112200"/>
              <exon start="111557" stop="111493"/>
              <exon start="111274" stop="111157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112298" stop="112200"/>
              <exon start="111557" stop="111493"/>
              <exon start="111274" stop="111116"/>
              <exon start="109123" stop="108823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112291" stop="112200"/>
              <exon start="111557" stop="111493"/>
              <exon start="111274" stop="111116"/>
              <exon start="109123" stop="109021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112287" stop="112200"/>
              <exon start="111557" stop="111493"/>
              <exon start="111274" stop="111116"/>
              <exon start="109123" stop="108821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112287" stop="112200"/>
              <exon start="111557" stop="111493"/>
              <exon start="111274" stop="111116"/>
              <exon start="109123" stop="108892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112286" stop="112200"/>
              <exon start="111557" stop="111493"/>
              <exon start="111274" stop="111116"/>
              <exon start="109123" stop="108811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112284" stop="112200"/>
              <exon start="111557" stop="111493"/>
              <exon start="111274" stop="111116"/>
              <exon start="109123" stop="108891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112283" stop="112200"/>
              <exon start="111557" stop="111493"/>
              <exon start="111274" stop="111116"/>
              <exon start="109123" stop="108873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112274" stop="112200"/>
              <exon start="111557" stop="111493"/>
              <exon start="111274" stop="111116"/>
              <exon start="109123" stop="108891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112221" stop="112200"/>
              <exon start="111557" stop="111493"/>
              <exon start="111274" stop="111116"/>
              <exon start="109123" stop="108821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111497" stop="111493"/>
              <exon start="111274" stop="111116"/>
              <exon start="109123" stop="108810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304047" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAGAATTGAGGTTCACTTGCCCTACTTTTCCAGAATTGAGTGTCTCTGAAATTGGGAGTTTTGTCCGGTGAATTTGAAACTAAAGGCATCATTCATCAGTTTTGTCCGGTGAATTGGAGTT : ATTTCTGGCAGCTGAAGCCCGAAAAACGTGTGAACTGACGAGCTTTCCCATAGAAATAGAAAATG : TTGTTTTTCTCATACTTCAAGGACATGGTGGGCAGAGAAGTGACAGTGGAACTGAAGAATGATTTGGCTATCCGAGGTACACTCCATTCAGTCGATCAGTATCTCAACATTAAGCTCGAAAACACAAGGGTCGTTGATGAAGACAAGTACCCTCACATG : CGTTCGGTGAGGAACTGCTTCATCAGAGGATCAGTGGTGAGATACGTCCAGTTACCTCCAGACGGAGTCGACATAGAGCTGCTTCATGATGCTACGAGGAGAGAAGCTCGTGGTGGCTAAAAGCCTAAAATTTGAGACCTTCAAAAGCGGATGTACTTTTAAACTTTTGAGTGGGTCAATCAGCATGTACTGATTTGTTTTGTTAAATGTAATTTTAGATGCTATTGCATGCAGTGCTTTGTATTCCTGCTGTTACTCCTCTCCATTTCAACCTAACTGTGTGGTGAAGCCTTGGATATGAATGTCTGGGACTCATATTCCCTTGCCTA</gDNA_template>
            <first_frame> *  E  L  R  F  T  C  P  T  F  P  E  L  S  V  S  E  I  G  S  F  V  R  *  I  *  N  *  R  H  H  S  S  V  L  S  G  E  L  E  L :   F  L  A  A  E  A  R  K  T  C  E  L  T  S  F  P  I  E  I  E  N   : V  V  F  L  I  L  Q  G  H  G  G  Q  R  S  D  S  G  T  E  E  *  F  G  Y  P  R  Y  T  P  F  S  R  S  V  S  Q  H  *  A  R  K  H  K  G  R  *  *  R  Q  V  P  S  H   : A  F  G  E  E  L  L  H  Q  R  I  S  G  E  I  R  P  V  T  S  R  R  S  R  H  R  A  A  S  *  C  Y  E  E  R  S  S  W  W  L  K  A  *  N  L  R  P  S  K  A  D  V  L  L  N  F  *  V  G  Q  S  A  C  T  D  L  F  C  *  M  *  F  *  M  L  L  H  A  V  L  C  I  P  A  V  T  P  L  H  F  N  L  T  V  W  *  S  L  G  Y  E  C  L  G  L  I  F  P  C  L </first_frame>
            <second_frame>  E  N  *  G  S  L  A  L  L  F  Q  N  *  V  S  L  K  L  G  V  L  S  G  E  F  E  T  K  G  I  I  H  Q  F  C  P  V  N  W  S   : Y  F  W  Q  L  K  P  E  K  R  V  N  *  R  A  F  P  *  K  *  K  M  :  L  F  F  S  Y  F  K  D  M  V  G  R  E  V  T  V  E  L  K  N  D  L  A  I  R  G  T  L  H  S  V  D  Q  Y  L  N  I  K  L  E  N  T  R  V  V  D  E  D  K  Y  P  H  M  :  R  S  V  R  N  C  F  I  R  G  S  V  V  R  Y  V  Q  L  P  P  D  G  V  D  I  E  L  L  H  D  A  T  R  R  E  A  R  G  G  *  K  P  K  I  *  D  L  Q  K  R  M  Y  F  *  T  F  E  W  V  N  Q  H  V  L  I  C  F  V  K  C  N  F  R  C  Y  C  M  Q  C  F  V  F  L  L  L  L  L  S  I  S  T  *  L  C  G  E  A  L  D  M  N  V  W  D  S  Y  S  L  A   </second_frame>
            <third_frame>   R  I  E  V  H  L  P  Y  F  S  R  I  E  C  L  *  N  W  E  F  C  P  V  N  L  K  L  K  A  S  F  I  S  F  V  R  *  I  G  V  :  I  S  G  S  *  S  P  K  N  V  *  T  D  E  L  S  H  R  N  R  K  C :   C  F  S  H  T  S  R  T  W  W  A  E  K  *  Q  W  N  *  R  M  I  W  L  S  E  V  H  S  I  Q  S  I  S  I  S  T  L  S  S  K  T  Q  G  S  L  M  K  T  S  T  L  T  C :   V  R  *  G  T  A  S  S  E  D  Q  W  *  D  T  S  S  Y  L  Q  T  E  S  T  *  S  C  F  M  M  L  R  G  E  K  L  V  V  A  K  S  L  K  F  E  T  F  K  S  G  C  T  F  K  L  L  S  G  S  I  S  M  Y  *  F  V  L  L  N  V  I  L  D  A  I  A  C  S  A  L  Y  S  C  C  Y  S  S  P  F  Q  P  N  C  V  V  K  P  W  I  *  M  S  G  T  H  I  P  L  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111498" stop="111493"/>
                    <exon start="111274" stop="111116"/>
                    <exon start="109123" stop="109004"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMLFFSYFKDMVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDEDKYPHMRSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="111540" e_stop="111493"/>
            <exon e_start="111239" e_stop="111116"/>
            <exon e_start="109123" e_stop="108841"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="0.833"/>
          <exon-intron don_prob="0.907" acc_prob="0.995" e_score="0.984"/>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.833">
            <gDNA_exon_boundary e_start="111540" e_stop="111493" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="111492" i_stop="111240" i_length="253"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="111239" e_stop="111116" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="0.907" acc_prob="0.995">
            <gDNA_intron_boundary i_start="111115" i_stop="109124" i_length="1992"/>
          </intron>
          <exon e_serial="3" e_score="0.951">
            <gDNA_exon_boundary e_start="109123" e_stop="108841" e_length="283"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111540" stop="111493"/>
              <exon start="111239" stop="111116"/>
              <exon start="109123" stop="108841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435006" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCGAAAAACGTGTGAACTGACGAGCTTTCCCATAGAAATAGAAAATG : AGAAGTGACAGTGGAACTGAAGAATGATTTGGCTATCCGAGGTACACTCCATTCAGTCGATCAGTATCTCAACATTAAGCTCGAAAACACAAGGGTCGTTGATGAAGACAAGTACCCTCACATG : CGTTCGGTGAGGAACTGCTTCATCAGAGGATCAGTGGTGAGATACGTCCAGTTACCTCCAGACGGAGTCGACATAGAGCTGCTTCATGATGCTACGAGGAGAGAAGCTCGTGGTGGCTAAAAGCCTAAAATTTGAGACCTTCAAAAGCGGATGTACTTTTAAACTTTTGAGTGGGTCAATCAGCATGTACTGATTTGTTTTGTTAAATGTAATTTTAGATGCTATTGCATGCAGTGCTTTGTATTCCTGCTGTTACTCCTCTCCATTTCAACCTAACTGTGTG</gDNA_template>
            <first_frame> P  E  K  R  V  N  *  R  A  F  P  *  K  *  K  M  :  R  S  D  S  G  T  E  E  *  F  G  Y  P  R  Y  T  P  F  S  R  S  V  S  Q  H  *  A  R  K  H  K  G  R  *  *  R  Q  V  P  S  H   : A  F  G  E  E  L  L  H  Q  R  I  S  G  E  I  R  P  V  T  S  R  R  S  R  H  R  A  A  S  *  C  Y  E  E  R  S  S  W  W  L  K  A  *  N  L  R  P  S  K  A  D  V  L  L  N  F  *  V  G  Q  S  A  C  T  D  L  F  C  *  M  *  F  *  M  L  L  H  A  V  L  C  I  P  A  V  T  P  L  H  F  N  L  T  V   </first_frame>
            <second_frame>  P  K  N  V  *  T  D  E  L  S  H  R  N  R  K  * :   E  V  T  V  E  L  K  N  D  L  A  I  R  G  T  L  H  S  V  D  Q  Y  L  N  I  K  L  E  N  T  R  V  V  D  E  D  K  Y  P  H  M  :  R  S  V  R  N  C  F  I  R  G  S  V  V  R  Y  V  Q  L  P  P  D  G  V  D  I  E  L  L  H  D  A  T  R  R  E  A  R  G  G  *  K  P  K  I  *  D  L  Q  K  R  M  Y  F  *  T  F  E  W  V  N  Q  H  V  L  I  C  F  V  K  C  N  F  R  C  Y  C  M  Q  C  F  V  F  L  L  L  L  L  S  I  S  T  *  L  C  </second_frame>
            <third_frame>   R  K  T  C  E  L  T  S  F  P  I  E  I  E  N   : E  K  *  Q  W  N  *  R  M  I  W  L  S  E  V  H  S  I  Q  S  I  S  I  S  T  L  S  S  K  T  Q  G  S  L  M  K  T  S  T  L  T  C :   V  R  *  G  T  A  S  S  E  D  Q  W  *  D  T  S  S  Y  L  Q  T  E  S  T  *  S  C  F  M  M  L  R  G  E  K  L  V  V  A  K  S  L  K  F  E  T  F  K  S  G  C  T  F  K  L  L  S  G  S  I  S  M  Y  *  F  V  L  L  N  V  I  L  D  A  I  A  C  S  A  L  Y  S  C  C  Y  S  S  P  F  Q  P  N  C  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111238" stop="111116"/>
                    <exon start="109123" stop="109004"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDEDKYPHMRSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="114858" PGL_stop="122220"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114858" e_stop="115205"/>
            <exon e_start="115291" e_stop="115343"/>
            <exon e_start="116020" e_stop="116144"/>
            <exon e_start="116233" e_stop="116328"/>
            <exon e_start="116451" e_stop="116588"/>
            <exon e_start="116858" e_stop="116923"/>
            <exon e_start="117829" e_stop="117941"/>
            <exon e_start="118272" e_stop="118382"/>
            <exon e_start="120951" e_stop="120994"/>
            <exon e_start="121136" e_stop="121238"/>
            <exon e_start="121969" e_stop="122220"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="0.994"/>
          <exon-intron don_prob="0.982" acc_prob="0.690" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.738" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.905" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.562" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="114858" e_stop="115205" e_length="348"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="115206" i_stop="115290" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="115291" e_stop="115343" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.690">
            <gDNA_intron_boundary i_start="115344" i_stop="116019" i_length="676"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="116020" e_stop="116144" e_length="125"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="116145" i_stop="116232" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="116233" e_stop="116328" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.738" acc_prob="1.000">
            <gDNA_intron_boundary i_start="116329" i_stop="116450" i_length="122"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="116451" e_stop="116588" e_length="138"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.992">
            <gDNA_intron_boundary i_start="116589" i_stop="116857" i_length="269"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="116858" e_stop="116923" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="116924" i_stop="117828" i_length="905"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="117829" e_stop="117941" e_length="113"/>
          </exon>
          <intron i_serial="7" don_prob="0.905" acc_prob="0.937">
            <gDNA_intron_boundary i_start="117942" i_stop="118271" i_length="330"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="118272" e_stop="118382" e_length="111"/>
          </exon>
          <intron i_serial="8" don_prob="0.972" acc_prob="0.995">
            <gDNA_intron_boundary i_start="118383" i_stop="120950" i_length="2568"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="120951" e_stop="120994" e_length="44"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="120995" i_stop="121135" i_length="141"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="121136" e_stop="121238" e_length="103"/>
          </exon>
          <intron i_serial="10" don_prob="0.562" acc_prob="1.000">
            <gDNA_intron_boundary i_start="121239" i_stop="121968" i_length="730"/>
          </intron>
          <exon e_serial="11" e_score="0.992">
            <gDNA_exon_boundary e_start="121969" e_stop="122220" e_length="252"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114858" stop="115205"/>
              <exon start="115291" stop="115343"/>
              <exon start="116020" stop="116144"/>
              <exon start="116233" stop="116328"/>
              <exon start="116451" stop="116588"/>
              <exon start="116858" stop="116923"/>
              <exon start="117829" stop="117849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115028" stop="115205"/>
              <exon start="115291" stop="115343"/>
              <exon start="116020" stop="116144"/>
              <exon start="116233" stop="116311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115157" stop="115205"/>
              <exon start="115291" stop="115343"/>
              <exon start="116020" stop="116144"/>
              <exon start="116233" stop="116328"/>
              <exon start="116451" stop="116588"/>
              <exon start="116858" stop="116923"/>
              <exon start="117829" stop="117941"/>
              <exon start="118272" stop="118382"/>
              <exon start="120951" stop="120978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116104" stop="116144"/>
              <exon start="116233" stop="116328"/>
              <exon start="116451" stop="116588"/>
              <exon start="116858" stop="116923"/>
              <exon start="117829" stop="117941"/>
              <exon start="118272" stop="118382"/>
              <exon start="120951" stop="120994"/>
              <exon start="121136" stop="121238"/>
              <exon start="121969" stop="122198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116245" stop="116328"/>
              <exon start="116451" stop="116588"/>
              <exon start="116858" stop="116923"/>
              <exon start="117829" stop="117941"/>
              <exon start="118272" stop="118308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117874" stop="117941"/>
              <exon start="118272" stop="118382"/>
              <exon start="120951" stop="120994"/>
              <exon start="121136" stop="121238"/>
              <exon start="121969" stop="122220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274538" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGGTAGATAAAGAGCATGAACATAACTGCACTCTCAAGTTTCCTCTCAACCACTCTTAGCATCTTATGGAGTGTCAGCTTCTTCAAATTCCTTTTATTTTTTAATCCCAATTTGTCTCTTCAGTTTTACTGTTATAAAGCCACATATGCTCTGCCCTTCTGTAATTGCTCTATTTTTGTTTTTCCATGATTGCTTGTCGCCTGAAACTTGTGTTGCTTAGTCATAATTTCATTCGTTAGGTTTAGGTTCTATTATCCCTTCGAGCTACCGGAAATGGTTCCATGGGCCGGACTCTCTTGCTGTTTGAGTGCAGCTGCTCTTTACCTTCTCGGTAGGAGCAGTGGAAG : AGATGCTGAAGTTCTTAAATCCGTTACAAGGGTTAATCAATTGAAGGATCTTG : CACAACTACTAGATACTGCATCCAAGGTGTTGCCTCTGGTGGTTACTATATCTGGAAGGGTTGGATCAGATACACCAATTAACTGTGAGTACAGTGGTCTACGAGGCGTGATTGTGGAAGAAACT : GCCGAACAACATTTTCTGAAACACAATGATGCAGGTTCTTGGATACAGGATTCTGCCTTGATGCTCTCAATGTGTAAAGAAGTTCCGTGGTACCTG : GATGATGGCACAGGTCGCACTTTTATTGTTGGTGGCCGTGGTGCCACGGGTTTGGTACTGACAGTTGGAAGTGAAGCCTTCGAGGAAGCAGGGAGATCATTTGTGCGAGGGACATTGGATTATCTTCAAGGTCTTAAG : ATGCTTGGAGTAAAGAGGATTGAACGTGTGCTGCCAGTTGGTACTCCTTTGACTGTTGTTGGCGAG : GCTGTCAAAGATGACATTGGGACAGTTCGGATCCAGCGACCACACAAAGGCCCATTTTATATCTCTCATAAAACTATTGACCAGCTCATTGCAAATCTTGGGAGATGGGCAAG : GTGGTACAAGTATGCTTCAATGGGTTTTACTGCTGTCGGTGTATATCTACTTGTGAAGCATACTTTTCATTATATGATGGAAAGAAAGCGTCACTGGGAATTGCGCAGGAG : AGTTCTTGCTGCTGCTGCTAAAAGAGCAGGAGATGAGGATGAAG : GTTCTGATGCTACAGCTGAGAATGGAGTGGATAATAAGGACCTCTTAATGCCAGATCTATGTGTTATATGTCTGGAGCAGGAATACAACTCAGTTTTTGTCCC : GTGTGGTCATATGTGCTGTTGCATGACGTGCTCTTCACACTTGACAAACTGCCCACTATGTAGGAGACGGATCGAGCAGGTTGTGAAAACTTTTCGCCATTGAGCAGAAAGCTGCCTTGTTGAAATGGCCATTTTCTGACTCGCTCATAAAAATCATTCGGATATTAACTTGTAGATTGTATTGAAAGCTGGATTTTGTCAGAGTTTTATGTCATTATGATGTATGTATAATAGCCTCTCTCCATCTCAACG</gDNA_template>
            <first_frame> E  V  D  K  E  H  E  H  N  C  T  L  K  F  P  L  N  H  S  *  H  L  M  E  C  Q  L  L  Q  I  P  F  I  F  *  S  Q  F  V  S  S  V  L  L  L  *  S  H  I  C  S  A  L  L  *  L  L  Y  F  C  F  S  M  I  A  C  R  L  K  L  V  L  L  S  H  N  F  I  R  *  V  *  V  L  L  S  L  R  A  T  G  N  G  S  M  G  R  T  L  L  L  F  E  C  S  C  S  L  P  S  R  *  E  Q  W  K  :  R  C  *  S  S  *  I  R  Y  K  G  *  S  I  E  G  S  C :   T  T  T  R  Y  C  I  Q  G  V  A  S  G  G  Y  Y  I  W  K  G  W  I  R  Y  T  N  *  L  *  V  Q  W  S  T  R  R  D  C  G  R  N   : C  R  T  T  F  S  E  T  Q  *  C  R  F  L  D  T  G  F  C  L  D  A  L  N  V  *  R  S  S  V  V  P   : G  *  W  H  R  S  H  F  Y  C  W  W  P  W  C  H  G  F  G  T  D  S  W  K  *  S  L  R  G  S  R  E  I  I  C  A  R  D  I  G  L  S  S  R  S  *   : D  A  W  S  K  E  D  *  T  C  A  A  S  W  Y  S  F  D  C  C  W  R   : G  C  Q  R  *  H  W  D  S  S  D  P  A  T  T  Q  R  P  I  L  Y  L  S  *  N  Y  *  P  A  H  C  K  S  W  E  M  G  K  :  V  V  Q  V  C  F  N  G  F  Y  C  C  R  C  I  S  T  C  E  A  Y  F  S  L  Y  D  G  K  K  A  S  L  G  I  A  Q  E  :  S  S  C  C  C  C  *  K  S  R  R  *  G  *  R :   F  *  C  Y  S  *  E  W  S  G  *  *  G  P  L  N  A  R  S  M  C  Y  M  S  G  A  G  I  Q  L  S  F  C  P  :  V  W  S  Y  V  L  L  H  D  V  L  F  T  L  D  K  L  P  T  M  *  E  T  D  R  A  G  C  E  N  F  S  P  L  S  R  K  L  P  C  *  N  G  H  F  L  T  R  S  *  K  S  F  G  Y  *  L  V  D  C  I  E  S  W  I  L  S  E  F  Y  V  I  M  M  Y  V  *  *  P  L  S  I  S  T </first_frame>
            <second_frame>  R  *  I  K  S  M  N  I  T  A  L  S  S  F  L  S  T  T  L  S  I  L  W  S  V  S  F  F  K  F  L  L  F  F  N  P  N  L  S  L  Q  F  Y  C  Y  K  A  T  Y  A  L  P  F  C  N  C  S  I  F  V  F  P  *  L  L  V  A  *  N  L  C  C  L  V  I  I  S  F  V  R  F  R  F  Y  Y  P  F  E  L  P  E  M  V  P  W  A  G  L  S  C  C  L  S  A  A  A  L  Y  L  L  G  R  S  S  G  R :   D  A  E  V  L  K  S  V  T  R  V  N  Q  L  K  D  L   : A  Q  L  L  D  T  A  S  K  V  L  P  L  V  V  T  I  S  G  R  V  G  S  D  T  P  I  N  C  E  Y  S  G  L  R  G  V  I  V  E  E  T  :  A  E  Q  H  F  L  K  H  N  D  A  G  S  W  I  Q  D  S  A  L  M  L  S  M  C  K  E  V  P  W  Y  L  :  D  D  G  T  G  R  T  F  I  V  G  G  R  G  A  T  G  L  V  L  T  V  G  S  E  A  F  E  E  A  G  R  S  F  V  R  G  T  L  D  Y  L  Q  G  L  K  :  M  L  G  V  K  R  I  E  R  V  L  P  V  G  T  P  L  T  V  V  G  E  :  A  V  K  D  D  I  G  T  V  R  I  Q  R  P  H  K  G  P  F  Y  I  S  H  K  T  I  D  Q  L  I  A  N  L  G  R  W  A  R :   W  Y  K  Y  A  S  M  G  F  T  A  V  G  V  Y  L  L  V  K  H  T  F  H  Y  M  M  E  R  K  R  H  W  E  L  R  R  R :   V  L  A  A  A  A  K  R  A  G  D  E  D  E   : G  S  D  A  T  A  E  N  G  V  D  N  K  D  L  L  M  P  D  L  C  V  I  C  L  E  Q  E  Y  N  S  V  F  V  P :   C  G  H  M  C  C  C  M  T  C  S  S  H  L  T  N  C  P  L  C  R  R  R  I  E  Q  V  V  K  T  F  R  H  *  A  E  S  C  L  V  E  M  A  I  F  *  L  A  H  K  N  H  S  D  I  N  L  *  I  V  L  K  A  G  F  C  Q  S  F  M  S  L  *  C  M  Y  N  S  L  S  P  S  Q   </second_frame>
            <third_frame>   G  R  *  R  A  *  T  *  L  H  S  Q  V  S  S  Q  P  L  L  A  S  Y  G  V  S  A  S  S  N  S  F  Y  F  L  I  P  I  C  L  F  S  F  T  V  I  K  P  H  M  L  C  P  S  V  I  A  L  F  L  F  F  H  D  C  L  S  P  E  T  C  V  A  *  S  *  F  H  S  L  G  L  G  S  I  I  P  S  S  Y  R  K  W  F  H  G  P  D  S  L  A  V  *  V  Q  L  L  F  T  F  S  V  G  A  V  E   : E  M  L  K  F  L  N  P  L  Q  G  L  I  N  *  R  I  L  :  H  N  Y  *  I  L  H  P  R  C  C  L  W  W  L  L  Y  L  E  G  L  D  Q  I  H  Q  L  T  V  S  T  V  V  Y  E  A  *  L  W  K  K  L :   P  N  N  I  F  *  N  T  M  M  Q  V  L  G  Y  R  I  L  P  *  C  S  Q  C  V  K  K  F  R  G  T  W :   M  M  A  Q  V  A  L  L  L  L  V  A  V  V  P  R  V  W  Y  *  Q  L  E  V  K  P  S  R  K  Q  G  D  H  L  C  E  G  H  W  I  I  F  K  V  L  R :   C  L  E  *  R  G  L  N  V  C  C  Q  L  V  L  L  *  L  L  L  A  R :   L  S  K  M  T  L  G  Q  F  G  S  S  D  H  T  K  A  H  F  I  S  L  I  K  L  L  T  S  S  L  Q  I  L  G  D  G  Q   : G  G  T  S  M  L  Q  W  V  L  L  L  S  V  Y  I  Y  L  *  S  I  L  F  I  I  *  W  K  E  S  V  T  G  N  C  A  G   : E  F  L  L  L  L  L  K  E  Q  E  M  R  M  K  :  V  L  M  L  Q  L  R  M  E  W  I  I  R  T  S  *  C  Q  I  Y  V  L  Y  V  W  S  R  N  T  T  Q  F  L  S   : R  V  V  I  C  A  V  A  *  R  A  L  H  T  *  Q  T  A  H  Y  V  G  D  G  S  S  R  L  *  K  L  F  A  I  E  Q  K  A  A  L  L  K  W  P  F  S  D  S  L  I  K  I  I  R  I  L  T  C  R  L  Y  *  K  L  D  F  V  R  V  L  C  H  Y  D  V  C  I  I  A  S  L  H  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115063" stop="115205"/>
                    <exon start="115291" stop="115343"/>
                    <exon start="116020" stop="116144"/>
                    <exon start="116233" stop="116328"/>
                    <exon start="116451" stop="116588"/>
                    <exon start="116858" stop="116923"/>
                    <exon start="117829" stop="117941"/>
                    <exon start="118272" stop="118382"/>
                    <exon start="120951" stop="120994"/>
                    <exon start="121136" stop="121238"/>
                    <exon start="121969" stop="122071"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1092</number_coding_nucleotides>
                  <number_encoded_amino_acids>364</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLCCLVIISFVRFRFYYPFELPEMVPWAGLSCCLSAAALYLLGRSSGRDAEVLKSVTRVNQLKDLAQLLDTASKVLPLVVTISGRVGSDTPINCEYSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMCKEVPWYLDDGTGRTFIVGGRGATGLVLTVGSEAFEEAGRSFVRGTLDYLQGLKMLGVKRIERVLPVGTPLTVVGEAVKDDIGTVRIQRPHKGPFYISHKTIDQLIANLGRWARWYKYASMGFTAVGVYLLVKHTFHYMMERKRHWELRRRVLAAAAKRAGDEDEGSDATAENGVDNKDLLMPDLCVICLEQEYNSVFVPCGHMCCCMTCSSHLTNCPLCRRRIEQVVKTFRH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114884" stop="115078"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHSQVSSQPLLASYGVSASSNSFYFLIPICLFSFTVIKPHMLCPSVIALFLFFHDCLSPETCVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="117443" e_stop="117941"/>
            <exon e_start="118272" e_stop="118382"/>
            <exon e_start="120951" e_stop="120994"/>
            <exon e_start="121136" e_stop="121238"/>
            <exon e_start="121969" e_stop="122220"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.905" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.562" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="117443" e_stop="117941" e_length="499"/>
          </exon>
          <intron i_serial="1" don_prob="0.905" acc_prob="0.937">
            <gDNA_intron_boundary i_start="117942" i_stop="118271" i_length="330"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="118272" e_stop="118382" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.995">
            <gDNA_intron_boundary i_start="118383" i_stop="120950" i_length="2568"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120951" e_stop="120994" e_length="44"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="120995" i_stop="121135" i_length="141"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="121136" e_stop="121238" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="0.562" acc_prob="1.000">
            <gDNA_intron_boundary i_start="121239" i_stop="121968" i_length="730"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="121969" e_stop="122220" e_length="252"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117443" stop="117941"/>
              <exon start="118272" stop="118382"/>
              <exon start="120951" stop="120994"/>
              <exon start="121136" stop="121238"/>
              <exon start="121969" stop="122029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117874" stop="117941"/>
              <exon start="118272" stop="118382"/>
              <exon start="120951" stop="120994"/>
              <exon start="121136" stop="121238"/>
              <exon start="121969" stop="122220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274538" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCCTCAATATATATAAAATGATTCAGTTGTTTTGTCACAGTCGAGTGGAAGCAAGCATGCAGAGTTTAGACTTTCTTTTAATGTGTCATTCCTTGTGTTCTTCATGGTCATCATGACCTGATTGGTAGAGAATAGTTTTAAAGGGAAATAATAAAAATAGCAAATAGATTATAGAAATAGCTATCAAGGAAATAAGAGGATCAAAATGCATCCAATATTACAAGTATACTTTAGTTATACTTGAGCATTCATTGTTCACTTCTACTACATTACTCTGCTTGAACACTAGTTGACCCTTCTCTGTGTGCGCCAAGGGGGCTGGATGCATATAAGAGCTGTCTGTATATTGTGTATCAACTTCATTTTCCTTTGTGATTGTATCAGGCTGTCAAAGATGACATTGGGACAGTTCGGATCCAGCGACCACACAAAGGCCCATTTTATATCTCTCATAAAACTATTGACCAGCTCATTGCAAATCTTGGGAGATGGGCAAG : GTGGTACAAGTATGCTTCAATGGGTTTTACTGCTGTCGGTGTATATCTACTTGTGAAGCATACTTTTCATTATATGATGGAAAGAAAGCGTCACTGGGAATTGCGCAGGAG : AGTTCTTGCTGCTGCTGCTAAAAGAGCAGGAGATGAGGATGAAG : GTTCTGATGCTACAGCTGAGAATGGAGTGGATAATAAGGACCTCTTAATGCCAGATCTATGTGTTATATGTCTGGAGCAGGAATACAACTCAGTTTTTGTCCC : GTGTGGTCATATGTGCTGTTGCATGACGTGCTCTTCACACTTGACAAACTGCCCACTATGTAGGAGACGGATCGAGCAGGTTGTGAAAACTTTTCGCCATTGAGCAGAAAGCTGCCTTGTTGAAATGGCCATTTTCTGACTCGCTCATAAAAATCATTCGGATATTAACTTGTAGATTGTATTGAAAGCTGGATTTTGTCAGAGTTTTATGTCATTATGATGTATGTATAATAGCCTCTCTCCATCTCAACG</gDNA_template>
            <first_frame> H  P  Q  Y  I  *  N  D  S  V  V  L  S  Q  S  S  G  S  K  H  A  E  F  R  L  S  F  N  V  S  F  L  V  F  F  M  V  I  M  T  *  L  V  E  N  S  F  K  G  K  *  *  K  *  Q  I  D  Y  R  N  S  Y  Q  G  N  K  R  I  K  M  H  P  I  L  Q  V  Y  F  S  Y  T  *  A  F  I  V  H  F  Y  Y  I  T  L  L  E  H  *  L  T  L  L  C  V  R  Q  G  G  W  M  H  I  R  A  V  C  I  L  C  I  N  F  I  F  L  C  D  C  I  R  L  S  K  M  T  L  G  Q  F  G  S  S  D  H  T  K  A  H  F  I  S  L  I  K  L  L  T  S  S  L  Q  I  L  G  D  G  Q   : G  G  T  S  M  L  Q  W  V  L  L  L  S  V  Y  I  Y  L  *  S  I  L  F  I  I  *  W  K  E  S  V  T  G  N  C  A  G   : E  F  L  L  L  L  L  K  E  Q  E  M  R  M  K  :  V  L  M  L  Q  L  R  M  E  W  I  I  R  T  S  *  C  Q  I  Y  V  L  Y  V  W  S  R  N  T  T  Q  F  L  S   : R  V  V  I  C  A  V  A  *  R  A  L  H  T  *  Q  T  A  H  Y  V  G  D  G  S  S  R  L  *  K  L  F  A  I  E  Q  K  A  A  L  L  K  W  P  F  S  D  S  L  I  K  I  I  R  I  L  T  C  R  L  Y  *  K  L  D  F  V  R  V  L  C  H  Y  D  V  C  I  I  A  S  L  H  L  N  </first_frame>
            <second_frame>  I  L  N  I  Y  K  M  I  Q  L  F  C  H  S  R  V  E  A  S  M  Q  S  L  D  F  L  L  M  C  H  S  L  C  S  S  W  S  S  *  P  D  W  *  R  I  V  L  K  G  N  N  K  N  S  K  *  I  I  E  I  A  I  K  E  I  R  G  S  K  C  I  Q  Y  Y  K  Y  T  L  V  I  L  E  H  S  L  F  T  S  T  T  L  L  C  L  N  T  S  *  P  F  S  V  C  A  K  G  A  G  C  I  *  E  L  S  V  Y  C  V  S  T  S  F  S  F  V  I  V  S  G  C  Q  R  *  H  W  D  S  S  D  P  A  T  T  Q  R  P  I  L  Y  L  S  *  N  Y  *  P  A  H  C  K  S  W  E  M  G  K  :  V  V  Q  V  C  F  N  G  F  Y  C  C  R  C  I  S  T  C  E  A  Y  F  S  L  Y  D  G  K  K  A  S  L  G  I  A  Q  E  :  S  S  C  C  C  C  *  K  S  R  R  *  G  *  R :   F  *  C  Y  S  *  E  W  S  G  *  *  G  P  L  N  A  R  S  M  C  Y  M  S  G  A  G  I  Q  L  S  F  C  P  :  V  W  S  Y  V  L  L  H  D  V  L  F  T  L  D  K  L  P  T  M  *  E  T  D  R  A  G  C  E  N  F  S  P  L  S  R  K  L  P  C  *  N  G  H  F  L  T  R  S  *  K  S  F  G  Y  *  L  V  D  C  I  E  S  W  I  L  S  E  F  Y  V  I  M  M  Y  V  *  *  P  L  S  I  S  T </second_frame>
            <third_frame>   S  S  I  Y  I  K  *  F  S  C  F  V  T  V  E  W  K  Q  A  C  R  V  *  T  F  F  *  C  V  I  P  C  V  L  H  G  H  H  D  L  I  G  R  E  *  F  *  R  E  I  I  K  I  A  N  R  L  *  K  *  L  S  R  K  *  E  D  Q  N  A  S  N  I  T  S  I  L  *  L  Y  L  S  I  H  C  S  L  L  L  H  Y  S  A  *  T  L  V  D  P  S  L  C  A  P  R  G  L  D  A  Y  K  S  C  L  Y  I  V  Y  Q  L  H  F  P  L  *  L  Y  Q  A  V  K  D  D  I  G  T  V  R  I  Q  R  P  H  K  G  P  F  Y  I  S  H  K  T  I  D  Q  L  I  A  N  L  G  R  W  A  R :   W  Y  K  Y  A  S  M  G  F  T  A  V  G  V  Y  L  L  V  K  H  T  F  H  Y  M  M  E  R  K  R  H  W  E  L  R  R  R :   V  L  A  A  A  A  K  R  A  G  D  E  D  E   : G  S  D  A  T  A  E  N  G  V  D  N  K  D  L  L  M  P  D  L  C  V  I  C  L  E  Q  E  Y  N  S  V  F  V  P :   C  G  H  M  C  C  C  M  T  C  S  S  H  L  T  N  C  P  L  C  R  R  R  I  E  Q  V  V  K  T  F  R  H  *  A  E  S  C  L  V  E  M  A  I  F  *  L  A  H  K  N  H  S  D  I  N  L  *  I  V  L  K  A  G  F  C  Q  S  F  M  S  L  *  C  M  Y  N  S  L  S  P  S  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117820" stop="117941"/>
                    <exon start="118272" stop="118382"/>
                    <exon start="120951" stop="120994"/>
                    <exon start="121136" stop="121238"/>
                    <exon start="121969" stop="122071"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYQAVKDDIGTVRIQRPHKGPFYISHKTIDQLIANLGRWARWYKYASMGFTAVGVYLLVKHTFHYMMERKRHWELRRRVLAAAAKRAGDEDEGSDATAENGVDNKDLLMPDLCVICLEQEYNSVFVPCGHMCCCMTCSSHLTNCPLCRRRIEQVVKTFRH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="115977" e_stop="116144"/>
            <exon e_start="116233" e_stop="116328"/>
            <exon e_start="116451" e_stop="116588"/>
            <exon e_start="116858" e_stop="116923"/>
            <exon e_start="118272" e_stop="118382"/>
            <exon e_start="120951" e_stop="120970"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.738" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.995" e_score="0.982"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="115977" e_stop="116144" e_length="168"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="116145" i_stop="116232" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="116233" e_stop="116328" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.738" acc_prob="1.000">
            <gDNA_intron_boundary i_start="116329" i_stop="116450" i_length="122"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="116451" e_stop="116588" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.992">
            <gDNA_intron_boundary i_start="116589" i_stop="116857" i_length="269"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="116858" e_stop="116923" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.937">
            <gDNA_intron_boundary i_start="116924" i_stop="118271" i_length="1348"/>
          </intron>
          <exon e_serial="5" e_score="0.982">
            <gDNA_exon_boundary e_start="118272" e_stop="118382" e_length="111"/>
          </exon>
          <intron i_serial="5" don_prob="0.972" acc_prob="0.995">
            <gDNA_intron_boundary i_start="118383" i_stop="120950" i_length="2568"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="120951" e_stop="120970" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115977" stop="116144"/>
              <exon start="116233" stop="116328"/>
              <exon start="116451" stop="116588"/>
              <exon start="116858" stop="116923"/>
              <exon start="118272" stop="118382"/>
              <exon start="120951" stop="120970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115978" stop="116144"/>
              <exon start="116233" stop="116328"/>
              <exon start="116451" stop="116588"/>
              <exon start="116858" stop="116923"/>
              <exon start="118272" stop="118336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208267" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCTCTCAACCTTGAATTATCTTTGTACTCCTTTTATTTTAGCACAACTACTAGATACTGCATCCAAGGTGTTGCCTCTGGTGGTTACTATATCTGGAAGGGTTGGATCAGATACACCAATTAACTGTGAGTACAGTGGTCTACGAGGCGTGATTGTGGAAGAAACT : GCCGAACAACATTTTCTGAAACACAATGATGCAGGTTCTTGGATACAGGATTCTGCCTTGATGCTCTCAATGTGTAAAGAAGTTCCGTGGTACCTG : GATGATGGCACAGGTCGCACTTTTATTGTTGGTGGCCGTGGTGCCACGGGTTTGGTACTGACAGTTGGAAGTGAAGCCTTCGAGGAAGCAGGGAGATCATTTGTGCGAGGGACATTGGATTATCTTCAAGGTCTTAAG : ATGCTTGGAGTAAAGAGGATTGAACGTGTGCTGCCAGTTGGTACTCCTTTGACTGTTGTTGGCGAG : GTGGTACAAGTATGCTTCAATGGGTTTTACTGCTGTCGGTGTATATCTACTTGTGAAGCATACTTTTCATTATATGATGGAAAGAAAGCGTCACTGGGAATTGCGCAGGAG : AGTTCTTGCTGCTGCTGCTA</gDNA_template>
            <first_frame> I  L  S  T  L  N  Y  L  C  T  P  F  I  L  A  Q  L  L  D  T  A  S  K  V  L  P  L  V  V  T  I  S  G  R  V  G  S  D  T  P  I  N  C  E  Y  S  G  L  R  G  V  I  V  E  E  T  :  A  E  Q  H  F  L  K  H  N  D  A  G  S  W  I  Q  D  S  A  L  M  L  S  M  C  K  E  V  P  W  Y  L  :  D  D  G  T  G  R  T  F  I  V  G  G  R  G  A  T  G  L  V  L  T  V  G  S  E  A  F  E  E  A  G  R  S  F  V  R  G  T  L  D  Y  L  Q  G  L  K  :  M  L  G  V  K  R  I  E  R  V  L  P  V  G  T  P  L  T  V  V  G  E  :  V  V  Q  V  C  F  N  G  F  Y  C  C  R  C  I  S  T  C  E  A  Y  F  S  L  Y  D  G  K  K  A  S  L  G  I  A  Q  E  :  S  S  C  C  C  C   </first_frame>
            <second_frame>  F  S  Q  P  *  I  I  F  V  L  L  L  F  *  H  N  Y  *  I  L  H  P  R  C  C  L  W  W  L  L  Y  L  E  G  L  D  Q  I  H  Q  L  T  V  S  T  V  V  Y  E  A  *  L  W  K  K  L :   P  N  N  I  F  *  N  T  M  M  Q  V  L  G  Y  R  I  L  P  *  C  S  Q  C  V  K  K  F  R  G  T  W :   M  M  A  Q  V  A  L  L  L  L  V  A  V  V  P  R  V  W  Y  *  Q  L  E  V  K  P  S  R  K  Q  G  D  H  L  C  E  G  H  W  I  I  F  K  V  L  R :   C  L  E  *  R  G  L  N  V  C  C  Q  L  V  L  L  *  L  L  L  A  R :   W  Y  K  Y  A  S  M  G  F  T  A  V  G  V  Y  L  L  V  K  H  T  F  H  Y  M  M  E  R  K  R  H  W  E  L  R  R  R :   V  L  A  A  A  A  </second_frame>
            <third_frame>   S  L  N  L  E  L  S  L  Y  S  F  Y  F  S  T  T  T  R  Y  C  I  Q  G  V  A  S  G  G  Y  Y  I  W  K  G  W  I  R  Y  T  N  *  L  *  V  Q  W  S  T  R  R  D  C  G  R  N   : C  R  T  T  F  S  E  T  Q  *  C  R  F  L  D  T  G  F  C  L  D  A  L  N  V  *  R  S  S  V  V  P   : G  *  W  H  R  S  H  F  Y  C  W  W  P  W  C  H  G  F  G  T  D  S  W  K  *  S  L  R  G  S  R  E  I  I  C  A  R  D  I  G  L  S  S  R  S  *   : D  A  W  S  K  E  D  *  T  C  A  A  S  W  Y  S  F  D  C  C  W  R   : G  G  T  S  M  L  Q  W  V  L  L  L  S  V  Y  I  Y  L  *  S  I  L  F  I  I  *  W  K  E  S  V  T  G  N  C  A  G   : E  F  L  L  L  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115977" stop="116144"/>
                    <exon start="116233" stop="116328"/>
                    <exon start="116451" stop="116588"/>
                    <exon start="116858" stop="116923"/>
                    <exon start="118272" stop="118382"/>
                    <exon start="120951" stop="120968"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILSTLNYLCTPFILAQLLDTASKVLPLVVTISGRVGSDTPINCEYSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMCKEVPWYLDDGTGRTFIVGGRGATGLVLTVGSEAFEEAGRSFVRGTLDYLQGLKMLGVKRIERVLPVGTPLTVVGEVVQVCFNGFYCCRCISTCEAYFSLYDGKKASLGIAQESSCCCC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="123720" PGL_stop="124426"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123720" e_stop="124426"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123720" e_stop="124426" e_length="707"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123720" stop="124426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123721" stop="124265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123724" stop="124322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123783" stop="124330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392993" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGAGAAGAAGAAAAAAAAAATGGCAAAGAACACCAAATCAGAAACCCAGTCCCGTGGAACATTTCGACAGTTTTTCAGGGCCTTTAAACGCCGAGTCTCTCCGGCCCGCCCACAGACCCCGATTTCAAACAAAATACCTATATATTATAATCACAGCAACAATGAAACCATGAAGCCCGGCCCGACGAACATTAATAAGGCAAGCGATGACTCTAAGTTTACTAATTTTATAGATGAGACGAAGAAAAAGATCAAGGCTAATTCAAGTTTTGTTGGTGATGAAAATGGCCCAGTAACTAAACGGGCCACCACAAGAAGGGACAGTTTCAATGATAGAATTTCTCACTTTATCAATCGGGCCAAACTCAAAATGCGAACTACTACTACTGTTGATCATGCTCATGCTGATGGTTAAGAAAAAAAACAATATATATATATATATTAATTGGTGAGTGCGCTCTGAATTAAATATTGGTTGGATAAGAATTAAGATACGAAAGGAGATGAACTTTTACGGTTGCGTCTATTTTTATTTGTTTGATGAGTAATTGTATGCTTTATTTTATTCTGCTGAAATAAAAATTATGACACTAGATACTCTTCAACTTAATGGATAATGATCCTTTTTGTGCTGGTTACCACTACGTGAAAATTGTGCTTTTGATTTTTATGTGAAAGTGAATATCAATGAATTCCATTATCGTA</gDNA_template>
            <first_frame> V  E  K  K  K  K  K  M  A  K  N  T  K  S  E  T  Q  S  R  G  T  F  R  Q  F  F  R  A  F  K  R  R  V  S  P  A  R  P  Q  T  P  I  S  N  K  I  P  I  Y  Y  N  H  S  N  N  E  T  M  K  P  G  P  T  N  I  N  K  A  S  D  D  S  K  F  T  N  F  I  D  E  T  K  K  K  I  K  A  N  S  S  F  V  G  D  E  N  G  P  V  T  K  R  A  T  T  R  R  D  S  F  N  D  R  I  S  H  F  I  N  R  A  K  L  K  M  R  T  T  T  T  V  D  H  A  H  A  D  G  *  E  K  K  Q  Y  I  Y  I  Y  *  L  V  S  A  L  *  I  K  Y  W  L  D  K  N  *  D  T  K  G  D  E  L  L  R  L  R  L  F  L  F  V  *  *  V  I  V  C  F  I  L  F  C  *  N  K  N  Y  D  T  R  Y  S  S  T  *  W  I  M  I  L  F  V  L  V  T  T  T  *  K  L  C  F  *  F  L  C  E  S  E  Y  Q  *  I  P  L  S   </first_frame>
            <second_frame>  L  R  R  R  K  K  K  W  Q  R  T  P  N  Q  K  P  S  P  V  E  H  F  D  S  F  S  G  P  L  N  A  E  S  L  R  P  A  H  R  P  R  F  Q  T  K  Y  L  Y  I  I  I  T  A  T  M  K  P  *  S  P  A  R  R  T  L  I  R  Q  A  M  T  L  S  L  L  I  L  *  M  R  R  R  K  R  S  R  L  I  Q  V  L  L  V  M  K  M  A  Q  *  L  N  G  P  P  Q  E  G  T  V  S  M  I  E  F  L  T  L  S  I  G  P  N  S  K  C  E  L  L  L  L  L  I  M  L  M  L  M  V  K  K  K  N  N  I  Y  I  Y  I  N  W  *  V  R  S  E  L  N  I  G  W  I  R  I  K  I  R  K  E  M  N  F  Y  G  C  V  Y  F  Y  L  F  D  E  *  L  Y  A  L  F  Y  S  A  E  I  K  I  M  T  L  D  T  L  Q  L  N  G  *  *  S  F  L  C  W  L  P  L  R  E  N  C  A  F  D  F  Y  V  K  V  N  I  N  E  F  H  Y  R  </second_frame>
            <third_frame>   *  E  E  E  K  K  N  G  K  E  H  Q  I  R  N  P  V  P  W  N  I  S  T  V  F  Q  G  L  *  T  P  S  L  S  G  P  P  T  D  P  D  F  K  Q  N  T  Y  I  L  *  S  Q  Q  Q  *  N  H  E  A  R  P  D  E  H  *  *  G  K  R  *  L  *  V  Y  *  F  Y  R  *  D  E  E  K  D  Q  G  *  F  K  F  C  W  *  *  K  W  P  S  N  *  T  G  H  H  K  K  G  Q  F  Q  *  *  N  F  S  L  Y  Q  S  G  Q  T  Q  N  A  N  Y  Y  Y  C  *  S  C  S  C  *  W  L  R  K  K  T  I  Y  I  Y  I  L  I  G  E  C  A  L  N  *  I  L  V  G  *  E  L  R  Y  E  R  R  *  T  F  T  V  A  S  I  F  I  C  L  M  S  N  C  M  L  Y  F  I  L  L  K  *  K  L  *  H  *  I  L  F  N  L  M  D  N  D  P  F  C  A  G  Y  H  Y  V  K  I  V  L  L  I  F  M  *  K  *  I  S  M  N  S  I  I  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0221G10.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123720" stop="124136"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEKKKKKMAKNTKSETQSRGTFRQFFRAFKRRVSPARPQTPISNKIPIYYNHSNNETMKPGPTNINKASDDSKFTNFIDETKKKIKANSSFVGDENGPVTKRATTRRDSFNDRISHFINRAKLKMRTTTTVDHAHADG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 295 chains have been computed
$ 
$ memory statistics:
$ 1339040 bytes spliced alignments in total
$ 154 spliced alignments have been stored
$ 8695 bytes was the average size of a spliced alignment
$ 31776 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1672 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 334 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 17:45:39
-->
