<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 14:25:28"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723723" ref_strand="+" ref_description="SGN-E723723 [FC21BH12]">
      <seq>gccttatctgtagccgcttaagaagagaaaggatgatgagtctctccattgcctcaccttcaggtgttaccttcacttccaagatgaacctctctaaatcctccttccatggcattcagattcctaaaatcatgcaggcgcgtgcagtaaacgcgccgcctcactcttgttcgtctttggtggtgaaaatggcgaaaagggaagaggaattgaaggaaatcagaactaagactactgaagagcttcaggaagagattgtggaccttaaaggtgagctatttatgcttcgtcttcaaaggtcagctcgaaatgagttcaagtccagcgagtttctgcgaatgcgcaaaaggattgcaaggatgcttacagttaaacgggagagagaggttgaagaagggattaacaagaggatatccaggaagctcgaccggaaatggaagaaaagcattgtccctagaccaccaccctctttgaagaagctacgagaggaggaggcagcagaagaagctaaggaatctgcctcctgattacagacaattaaactagcaggcaaatgttgtatttcttttctggcctctcctctcatttgtttcttcctcatacgtatagtttataactgctcctgaatttttgtattgaatcaacttaatttgcaagtgaccattcttaanaaaaaaaaaaaaaaaaaaaaaanntttcccgcccaaaaggcccacttggaattttctaaagggcccccaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1121" stop="57605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1420" g_stop="1769" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1770" i_stop="2612" i_length="843">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2613" g_stop="2934" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="672" r_length="322" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2935" i_stop="3235" i_length="301">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.52"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3236" g_stop="3279" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="716" r_length="44" r_score="0.523"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3280" i_stop="3370" i_length="91">
            <donor d_prob="0.000" d_score="0.52"/>
            <acceptor a_prob="0.294" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3371" g_stop="3398" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="744" r_length="28" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E723723" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1420" e_stop="1769"/>
          <exon e_start="2613" e_stop="2934"/>
          <exon e_start="3236" e_stop="3279"/>
          <exon e_start="3371" e_stop="3398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTATCTGTAGCAGCAGAAGAAGAGAAAGGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGGGTACTCTCTCTTACCTTTGGAATTAGCAAATTCGATTGTTAAAATCATAGTAATTGTGAAGTTTTCAACAGTGTACTGTTTTTAATGTCACCTCATTTCCAATTATTAGATTTAGGTGCATATCTGTGCGAAGAATGTAACAGTTCCTAAATATGGGAACACTGCAGAGAGACCTTAGCTAGTTAGACCACACGTTGTTGAAGAGTTTTATTTGAATGGTGAATTTGAGTCTTAATTAAATCCAATTTGTGACACTTACGTTTTAGAAGGAAGTAGTAACATGGTAAGCGTTCCTTGTGTCGCGCAGCAAGTACTGAAAATAGATGGGGTGTATGATTAAGGAAGAAGAGTAAGTGCACCCTAAAAGTAAATAGGACATAGTTAAGAGGTAGGGATGTCTATACCAGAGGTGTCTGATCAATCCCATAACCGATTCTCTTTAATTGACTATACTGATTTATTCCGTATGAGCAGAAGCTACAATAGCAGCTTAACCAGCTTAAAGCGGTTTCAATGTTGCTCAAAACTTGTCTTAAATGCTTTTATCAATATGTATTATGAATCTTTCCTCTTCTTTGTTTTAGCATTATTCACATATCCGGTGCTTGTGTTGATAGACTATTTGTCTCTTATGGTTGTATGTACTTGTGTCTGTGTGTATTGCAATCATTAGTGCGCTAATAAGGTATACTTTTCCTCGCCAAGGAGTAGTCTCTTCTGAAGAGGTATAATCATGTCCATTTTCCCATTTCTCTTATTTTAGAAATTGCATGTTCCTTTTTCATGTATTTACTTCTTGGATTTATTTTACTTCACTTTGACGTGATTTACATAATGTGCTAGATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATAGTTTATAACTGCTCCTGAATTTTTGTATTGAATCAACTTAATTTGCAAGTGACCATTCTTAACTATGTTCCCAGTCATTGAGGATTGTGTCAATTTTCTTCTTGTCAAAATTGTACCTAAATGGTGAAATCTGTTTCGCTTTCTGCCAAGTTCTCTTTCATTCTGTTTCGTGTCTTAACACTAGTGCTGCTATTGGTTTTCTTCAATGCAGATGTCATTCTGAATAATGAATAAGAAATCTTAAATATACTAAAATCAATAACATTTAACCAGTCTTAAAAAGACTTATTACTTGTGCTATATTGCATAGTTTAAGCCAAAGGCTCCGGTTTTGACAAGGTGATTATAGCATATAACCCAAACACCAAGACACAAAAGCATATATCTACTTTTCAACCAAAACAACCCCATCAAAGAGTGTGATCCGTTGCGGACTTTTATGTTTAACCCCGAATATGACCTGTTATACTCAGACAAGTAAAGTGAAAATATTAATCTAGTATTGCGTGTCTGACGAGTCACCAAAAA</genome_strand>
        <mrna_strand>GCCTTATCTGTAGCCGCTTAAGAAGAGAAAGGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAAAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATAGTTTATAACTGCTCCTGAATTTTTGTATTGAATCAACTTAATTTGCAAGTGACCATTCTTAANA.............................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAANNTTTCCCGCCCAAAAGGCCCAC...........................................................................................TTGGAATTTTCTAAAGGGCCCCCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293267" ref_strand="+" ref_description="SGN-E293267 [cLET-18-I3]">
      <seq>agaagaagagaaaggatgatgagtctctccattgcctcaccttcaggtgttaccttcacttccaagatgaacctctctaaatcctccttccatggcattcagattcctaaaatcatgcaggcgcgtgcagtaaacgcgccgcctcactcttgttcgtctttggtggtgaaaatggcgaagagggaagaggaattgaaggaaatcagaactaagactactgaagagcttcaggaagagattgtggaccttaaaggtgagctatttatgcttcgtcttcaaaggtcagctcgaaatgagttcaagtccagcgagtttctgcgaatgcgcaaaaggattgcaaggatgcttacagttaaacgggagagagaggttgaagaagggattaacaagaggatatccaggaagctcgaccggaaatggaagaaaagcattgtccctagaccaccaccctctttgaagaagctacgagaggaggaggcagcagaagaagctaaggaatctgcctcctgattacagacaattaaactagcaggcaaatgttgtatttcttttctggcctctcctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1137" stop="3146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1437" g_stop="1769" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1770" i_stop="2612" i_length="843">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2613" g_stop="2846" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="567" r_length="234" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E293267" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1437" e_stop="1769"/>
          <exon e_start="2613" e_stop="2846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAGAGAAAGGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGGGTACTCTCTCTTACCTTTGGAATTAGCAAATTCGATTGTTAAAATCATAGTAATTGTGAAGTTTTCAACAGTGTACTGTTTTTAATGTCACCTCATTTCCAATTATTAGATTTAGGTGCATATCTGTGCGAAGAATGTAACAGTTCCTAAATATGGGAACACTGCAGAGAGACCTTAGCTAGTTAGACCACACGTTGTTGAAGAGTTTTATTTGAATGGTGAATTTGAGTCTTAATTAAATCCAATTTGTGACACTTACGTTTTAGAAGGAAGTAGTAACATGGTAAGCGTTCCTTGTGTCGCGCAGCAAGTACTGAAAATAGATGGGGTGTATGATTAAGGAAGAAGAGTAAGTGCACCCTAAAAGTAAATAGGACATAGTTAAGAGGTAGGGATGTCTATACCAGAGGTGTCTGATCAATCCCATAACCGATTCTCTTTAATTGACTATACTGATTTATTCCGTATGAGCAGAAGCTACAATAGCAGCTTAACCAGCTTAAAGCGGTTTCAATGTTGCTCAAAACTTGTCTTAAATGCTTTTATCAATATGTATTATGAATCTTTCCTCTTCTTTGTTTTAGCATTATTCACATATCCGGTGCTTGTGTTGATAGACTATTTGTCTCTTATGGTTGTATGTACTTGTGTCTGTGTGTATTGCAATCATTAGTGCGCTAATAAGGTATACTTTTCCTCGCCAAGGAGTAGTCTCTTCTGAAGAGGTATAATCATGTCCATTTTCCCATTTCTCTTATTTTAGAAATTGCATGTTCCTTTTTCATGTATTTACTTCTTGGATTTATTTTACTTCACTTTGACGTGATTTACATAATGTGCTAGATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTC</genome_strand>
        <mrna_strand>AGAAGAAGAGAAAGGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712482" ref_strand="+" ref_description="SGN-E712482 [FB04DH09]">
      <seq>aagaagagaaaggatgatgagtctctccattgcctcaccttcaggtgttaccttcacttccaagatgaacctctctaaatcctccttccatggcattcagattcctaaaatcatgcaggcgcgtgcagtaaacgcgccgcctcactcttgttcgtctttggtggtgaaaatggcgaagagggaagaggaattgaaggaaatcagaactaagactactgaagagcttcaggaagagattgtggaccttaaaggtgagctatttatgcttcgtcttcaaaggtcagctcgaaatgagttcaagtccagcgagtttctgcgaatgcgcaaaaggattgcaaggatgcttacagttaaacgggagagagaggttgaagaagggattaacaagaggatatccaggaagctcgaccggaaatggaagaaaagcattgtccctagaccaccaccctctttgaagaagctacgagaggaggaggcagcagaagaagctaaggaatctgcctcctgattacagacaattaaactagcaggcaaatgttgtatttcttttctggcctctcctctcatttgtttcttcctcatacgtatagtttataactgctcctgaatttttgtattgaatcaacttaatttgcaagtgaccattcttaactatgttcccagtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1139" stop="3247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1439" g_stop="1769" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1770" i_stop="2612" i_length="843">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2613" g_stop="2956" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="675" r_length="344" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E712482" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1439" e_stop="1769"/>
          <exon e_start="2613" e_stop="2956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAGAAAGGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGGGTACTCTCTCTTACCTTTGGAATTAGCAAATTCGATTGTTAAAATCATAGTAATTGTGAAGTTTTCAACAGTGTACTGTTTTTAATGTCACCTCATTTCCAATTATTAGATTTAGGTGCATATCTGTGCGAAGAATGTAACAGTTCCTAAATATGGGAACACTGCAGAGAGACCTTAGCTAGTTAGACCACACGTTGTTGAAGAGTTTTATTTGAATGGTGAATTTGAGTCTTAATTAAATCCAATTTGTGACACTTACGTTTTAGAAGGAAGTAGTAACATGGTAAGCGTTCCTTGTGTCGCGCAGCAAGTACTGAAAATAGATGGGGTGTATGATTAAGGAAGAAGAGTAAGTGCACCCTAAAAGTAAATAGGACATAGTTAAGAGGTAGGGATGTCTATACCAGAGGTGTCTGATCAATCCCATAACCGATTCTCTTTAATTGACTATACTGATTTATTCCGTATGAGCAGAAGCTACAATAGCAGCTTAACCAGCTTAAAGCGGTTTCAATGTTGCTCAAAACTTGTCTTAAATGCTTTTATCAATATGTATTATGAATCTTTCCTCTTCTTTGTTTTAGCATTATTCACATATCCGGTGCTTGTGTTGATAGACTATTTGTCTCTTATGGTTGTATGTACTTGTGTCTGTGTGTATTGCAATCATTAGTGCGCTAATAAGGTATACTTTTCCTCGCCAAGGAGTAGTCTCTTCTGAAGAGGTATAATCATGTCCATTTTCCCATTTCTCTTATTTTAGAAATTGCATGTTCCTTTTTCATGTATTTACTTCTTGGATTTATTTTACTTCACTTTGACGTGATTTACATAATGTGCTAGATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATAGTTTATAACTGCTCCTGAATTTTTGTATTGAATCAACTTAATTTGCAAGTGACCATTCTTAACTATGTTCCCAGTCATTGAGGATT</genome_strand>
        <mrna_strand>AAGAAGAGAAAGGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATAGTTTATAACTGCTCCTGAATTTTTGTATTGAATCAACTTAATTTGCAAGTGACCATTCTTAACTATGTTCCCAGTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339282" ref_strand="+" ref_description="SGN-E339282 [cTOF-4-F3]">
      <seq>aagaagagaaaggatgatgagtctctccattgcctcaccttcaggtgttaccttcacttccaagatgaacctctctaaatcctccttccatggcattcagattcctaaaatcatgcaggcgcgtgcagtaaacgcgccgcctcactcttgttcgtctttggtggtgaaaatggcgaagagggaagaggaattgaaggaaatcagaactaagactactgaagagcttcaggaagagattgtggaccttaaaggtgagctatttatgcttcgtcttcaaaggtcagctcgaaatgagttcaagtccagcgagtttctgcgaatgcgcaaaaggattgcaaggatgcttacagttaaacgggagagagaggttgaagaagggattaacaagaggatatccaggaagctcgaccggaaatggaagaaaagcattgtccctagaccaccaccctctttgaagaagctacgagaggaggaggcagcagaagaagctaaggaatctgcctcctgattacagacaattaaactagcaggcaaatgttgtatttcttttctggcctctcctctcatttgtttcttcctcatacgtatagtttataactgctcctgaatttttgtattgaatcaacttaatttgcaagtgaccattcttaactatgttcccagtcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1139" stop="3250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1439" g_stop="1769" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1770" i_stop="2612" i_length="843">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2613" g_stop="2950" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="669" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E339282" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1439" e_stop="1769"/>
          <exon e_start="2613" e_stop="2950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAGAAAGGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGGGTACTCTCTCTTACCTTTGGAATTAGCAAATTCGATTGTTAAAATCATAGTAATTGTGAAGTTTTCAACAGTGTACTGTTTTTAATGTCACCTCATTTCCAATTATTAGATTTAGGTGCATATCTGTGCGAAGAATGTAACAGTTCCTAAATATGGGAACACTGCAGAGAGACCTTAGCTAGTTAGACCACACGTTGTTGAAGAGTTTTATTTGAATGGTGAATTTGAGTCTTAATTAAATCCAATTTGTGACACTTACGTTTTAGAAGGAAGTAGTAACATGGTAAGCGTTCCTTGTGTCGCGCAGCAAGTACTGAAAATAGATGGGGTGTATGATTAAGGAAGAAGAGTAAGTGCACCCTAAAAGTAAATAGGACATAGTTAAGAGGTAGGGATGTCTATACCAGAGGTGTCTGATCAATCCCATAACCGATTCTCTTTAATTGACTATACTGATTTATTCCGTATGAGCAGAAGCTACAATAGCAGCTTAACCAGCTTAAAGCGGTTTCAATGTTGCTCAAAACTTGTCTTAAATGCTTTTATCAATATGTATTATGAATCTTTCCTCTTCTTTGTTTTAGCATTATTCACATATCCGGTGCTTGTGTTGATAGACTATTTGTCTCTTATGGTTGTATGTACTTGTGTCTGTGTGTATTGCAATCATTAGTGCGCTAATAAGGTATACTTTTCCTCGCCAAGGAGTAGTCTCTTCTGAAGAGGTATAATCATGTCCATTTTCCCATTTCTCTTATTTTAGAAATTGCATGTTCCTTTTTCATGTATTTACTTCTTGGATTTATTTTACTTCACTTTGACGTGATTTACATAATGTGCTAGATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATAGTTTATAACTGCTCCTGAATTTTTGTATTGAATCAACTTAATTTGCAAGTGACCATTCTTAACTATGTTCCCAGTCATTG</genome_strand>
        <mrna_strand>AAGAAGAGAAAGGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATAGTTTATAACTGCTCCTGAATTTTTGTATTGAATCAACTTAATTTGCAAGTGACCATTCTTAACTATGTTCCCAGTCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279168" ref_strand="+" ref_description="SGN-E279168 [cLEL-4-P23](-)">
      <seq>tgtaagcatccttgcaatccttttgcgcattcgcagaaactcgctggacttgaactcatttcgagctgacctttgaagacgaagcataaatagctcacctttaaggtccacaatctcttcctgaagctcttcagtagtcttagttctgatttccttcaattcctcttccctcttcgccattttcaccaccaaagacgaacaagagtgaggcggcgcgtttactgcacgcgcctgcatgattttaggaatctgaatgccatggaaggaggagttagagaggttcatcttggaagtgaaggtaacacctgaaggtgaggcaatggagagactcatcatcctttctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2071" stop="1142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1769" g_stop="1440" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="348" r_length="330" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E279168" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1769" e_stop="1440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTGCGCATTCGCAGAAACTCGCTGGACTTGAACTCATTTCGAGCTGACCTTTGAAGACGAAGCATAAATAGCTCACCTTTAAGGTCCACAATCTCTTCCTGAAGCTCTTCAGTAGTCTTAGTTCTGATTTCCTTCAATTCCTCTTCCCTCTTCGCCATTTTCACCACCAAAGACGAACAAGAGTGAGGCGGCGCGTTTACTGCACGCGCCTGCATGATTTTAGGAATCTGAATGCCATGGAAGGAGGATTTAGAGAGGTTCATCTTGGAAGTGAAGGTAACACCTGAAGGTGAGGCAATGGAGAGACTCATCATCCTTTCTCTTCT</genome_strand>
        <mrna_strand>CCTTTTGCGCATTCGCAGAAACTCGCTGGACTTGAACTCATTTCGAGCTGACCTTTGAAGACGAAGCATAAATAGCTCACCTTTAAGGTCCACAATCTCTTCCTGAAGCTCTTCAGTAGTCTTAGTTCTGATTTCCTTCAATTCCTCTTCCCTCTTCGCCATTTTCACCACCAAAGACGAACAAGAGTGAGGCGGCGCGTTTACTGCACGCGCCTGCATGATTTTAGGAATCTGAATGCCATGGAAGGAGGAGTTAGAGAGGTTCATCTTGGAAGTGAAGGTAACACCTGAAGGTGAGGCAATGGAGAGACTCATCATCCTTTCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297516" ref_strand="+" ref_description="SGN-E297516 [cLET-28-D23]">
      <seq>aagagaaaggatgatgtgtctcttcattgcctcaccttcaggtgttaccttcacttccaagatgaacctctctaaatcctccttccatggcattcagattcctaaaatcatgcaggcgcgtgcagtaaacgcgccgcctcactcttgttcgtctttggtggtgaaaatggcgaagagggaagaggaattgaaggaaatcagaactaagactactgaagagcttcaggaagagattgtggaccttaaaggtgagctatttatgcttcgtcttcaaaggtcagctcgaaatgagttcaagtccagcgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1142" stop="2049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1442" g_stop="1749" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E297516" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1442" e_stop="1749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAAAGGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGT</genome_strand>
        <mrna_strand>AAGAGAAAGGATGATGTGTCTCTTCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297655" ref_strand="+" ref_description="SGN-E297655 [cLET-28-B23]">
      <seq>aagagaaaggatgatgtgtctcttcattgcctcaccttcaggtgttaccttcacttccaatttgaacctctctaaatcctccttccatggcattcagattcctaaaatcatgcaggcgcgtgcagtaaacgcgccgcctcactcttgttcgtctttggtggcgaaaatggcgaagagggaagaggaattgaaggcaatcagaactaacactactgaagagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1142" stop="1964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1442" g_stop="1664" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E297655" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>223</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1442" e_stop="1664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAAAGGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTT</genome_strand>
        <mrna_strand>AAGAGAAAGGATGATGTGTCTCTTCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAATTTGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGCGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGCAATCAGAACTAACACTACTGAAGAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733831" ref_strand="+" ref_description="SGN-E733831 [LB11AC06]">
      <seq>cagaaaggatgatgagtctctccattgcctcaccttcaggtgttaccttcacttccaagatgaacctctctaaatcctccttccatggcattcagattcctaaaatcatgcaggcgcgtgcagtaaacgcgccgcctcactcttgttcgtctttggtggtgaaaatggcgaagagggaagaggaattgaaggaaatcagaactaagactactgaagagcttcaggaagagattgtggaccttaaaggtgagctatttatgcttcgtcttcaaaggtcagctcgaaatgagttcaagtccagcgagtttctgcgaatgcgcaaaaggattgcaaggatgcttacagttaaacgggagagagaggttgaagaagggattaacaagaggatatccaggaagctcgaccggaaatggaagaaaagcattgtccctagaccaccaccctctttgaagaagctacgagaggaggaggcagcagaagaagctaaggaatctgcctcctgattacagacaattaaactagcaggcaaatgttgtatttcttttctggcctctcctctcatttgtttcttcctcatacgtatagtttataactgctcctgaatttttgtattgaatcaacttaatttgcaagtgaccattcttaactatgttcccagtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1145" stop="3247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1444" g_stop="1769" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1770" i_stop="2612" i_length="843">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2613" g_stop="2956" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="670" r_length="344" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E733831" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1444" e_stop="1769"/>
          <exon e_start="2613" e_stop="2956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGGGTACTCTCTCTTACCTTTGGAATTAGCAAATTCGATTGTTAAAATCATAGTAATTGTGAAGTTTTCAACAGTGTACTGTTTTTAATGTCACCTCATTTCCAATTATTAGATTTAGGTGCATATCTGTGCGAAGAATGTAACAGTTCCTAAATATGGGAACACTGCAGAGAGACCTTAGCTAGTTAGACCACACGTTGTTGAAGAGTTTTATTTGAATGGTGAATTTGAGTCTTAATTAAATCCAATTTGTGACACTTACGTTTTAGAAGGAAGTAGTAACATGGTAAGCGTTCCTTGTGTCGCGCAGCAAGTACTGAAAATAGATGGGGTGTATGATTAAGGAAGAAGAGTAAGTGCACCCTAAAAGTAAATAGGACATAGTTAAGAGGTAGGGATGTCTATACCAGAGGTGTCTGATCAATCCCATAACCGATTCTCTTTAATTGACTATACTGATTTATTCCGTATGAGCAGAAGCTACAATAGCAGCTTAACCAGCTTAAAGCGGTTTCAATGTTGCTCAAAACTTGTCTTAAATGCTTTTATCAATATGTATTATGAATCTTTCCTCTTCTTTGTTTTAGCATTATTCACATATCCGGTGCTTGTGTTGATAGACTATTTGTCTCTTATGGTTGTATGTACTTGTGTCTGTGTGTATTGCAATCATTAGTGCGCTAATAAGGTATACTTTTCCTCGCCAAGGAGTAGTCTCTTCTGAAGAGGTATAATCATGTCCATTTTCCCATTTCTCTTATTTTAGAAATTGCATGTTCCTTTTTCATGTATTTACTTCTTGGATTTATTTTACTTCACTTTGACGTGATTTACATAATGTGCTAGATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATAGTTTATAACTGCTCCTGAATTTTTGTATTGAATCAACTTAATTTGCAAGTGACCATTCTTAACTATGTTCCCAGTCATTGAGGATT</genome_strand>
        <mrna_strand>CAGAAAGGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATAGTTTATAACTGCTCCTGAATTTTTGTATTGAATCAACTTAATTTGCAAGTGACCATTCTTAACTATGTTCCCAGTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740920" ref_strand="+" ref_description="SGN-E740920 [LC23CA01]">
      <seq>cattggatgatgagtctctccattgcctcaccttcaggtgttaccttcacttccaagatgaacctctctaaatcctccttccatggcattcagattcctaaaatcatgcaggcgcgtgcagtaaacgcgccgcctcactcttgttcgtctttggtggtgaaaatggcgaagagggaagaggaattgaaggaaatcagaactaagactactgaagagcttcaggaagagattgtggaccttaaaggtgagctatttatgcttcgtcttcaaaggtcagctcgaaatgagttcaagtccagcgagtttctgcgaatgcgcaaaaggattgcaaggatgcttacagttaaacgggagagagaggttgaagaagggattaacaagaggatatccaggaagctcgaccggaaatggaagaaaagcattgtccctagaccaccaccctctttgaagaagctacgagaggaggaggcagcagaagaagctaaggaatctgcctcctgattacagacaattaaactagcaggcaaatgttgtatttcttttctggcctctcctctcatttgtttcttcctcatacgtatagtttataactgctcctgaatttttgtattgaatcaacttaatttgcaagtgaccattcttaactaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1150" stop="57598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1446" g_stop="1769" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1770" i_stop="2612" i_length="843">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2613" g_stop="2953" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="665" r_length="341" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E740920" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1446" e_stop="1769"/>
          <exon e_start="2613" e_stop="2953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGGGTACTCTCTCTTACCTTTGGAATTAGCAAATTCGATTGTTAAAATCATAGTAATTGTGAAGTTTTCAACAGTGTACTGTTTTTAATGTCACCTCATTTCCAATTATTAGATTTAGGTGCATATCTGTGCGAAGAATGTAACAGTTCCTAAATATGGGAACACTGCAGAGAGACCTTAGCTAGTTAGACCACACGTTGTTGAAGAGTTTTATTTGAATGGTGAATTTGAGTCTTAATTAAATCCAATTTGTGACACTTACGTTTTAGAAGGAAGTAGTAACATGGTAAGCGTTCCTTGTGTCGCGCAGCAAGTACTGAAAATAGATGGGGTGTATGATTAAGGAAGAAGAGTAAGTGCACCCTAAAAGTAAATAGGACATAGTTAAGAGGTAGGGATGTCTATACCAGAGGTGTCTGATCAATCCCATAACCGATTCTCTTTAATTGACTATACTGATTTATTCCGTATGAGCAGAAGCTACAATAGCAGCTTAACCAGCTTAAAGCGGTTTCAATGTTGCTCAAAACTTGTCTTAAATGCTTTTATCAATATGTATTATGAATCTTTCCTCTTCTTTGTTTTAGCATTATTCACATATCCGGTGCTTGTGTTGATAGACTATTTGTCTCTTATGGTTGTATGTACTTGTGTCTGTGTGTATTGCAATCATTAGTGCGCTAATAAGGTATACTTTTCCTCGCCAAGGAGTAGTCTCTTCTGAAGAGGTATAATCATGTCCATTTTCCCATTTCTCTTATTTTAGAAATTGCATGTTCCTTTTTCATGTATTTACTTCTTGGATTTATTTTACTTCACTTTGACGTGATTTACATAATGTGCTAGATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATAGTTTATAACTGCTCCTGAATTTTTGTATTGAATCAACTTAATTTGCAAGTGACCATTCTTAACTATGTTCCCAGTCATTGAGG</genome_strand>
        <mrna_strand>CATTGGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATAGTTTATAACTGCTCCTGAATTTTTGTATTGAATCAACTTAATTTGCAAGTGACCATTCTTAACTAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736994" ref_strand="+" ref_description="SGN-E736994 [LC08AD07]">
      <seq>gaaatgatgatgagtctctccattgcctcaccttcaggtgttaccttcacttccaagatgaacctctctaaatcctccttccatggcattcagattcctaaaatcatgcaggcgcgtgcagtaaacgcgccgcctcactcttgttcgtctttggtggtgaaaatggcgaagagggaagaggaattgaaggaaatcagaactaagactactgaagagcttcaggaagagattgtggaccttaaaggtgagctatttatgcttcgtcttcaaaggtcagctcgaaatgagttcaagtccagcgagtttctgcgaatgcgcaaaaggattgcaaggatgcttacagttaaacgggagagagaggttgaagaagggattaacaagaggatatccaggaagctcgaccggaaatggaagaaaagcattgtccctagaccaccaccctctttgaagaagctacgagaggaggaggcagcagaagaagctaaggaatctgcctcctgattacagacaattaaactagcaggcaaatgttgtatttcttttctggcctctcctctcatttgtttcttcctcatacgtatagtttataactgctcctgaatttttgtattgaatcaacttaatttgcaagtgaccattcttaactannnaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1146" stop="3235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1446" g_stop="1769" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1770" i_stop="2612" i_length="843">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2613" g_stop="2936" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="648" r_length="324" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="651" polyA_stop="665"/>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E736994" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1446" e_stop="1769"/>
          <exon e_start="2613" e_stop="2936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGGGTACTCTCTCTTACCTTTGGAATTAGCAAATTCGATTGTTAAAATCATAGTAATTGTGAAGTTTTCAACAGTGTACTGTTTTTAATGTCACCTCATTTCCAATTATTAGATTTAGGTGCATATCTGTGCGAAGAATGTAACAGTTCCTAAATATGGGAACACTGCAGAGAGACCTTAGCTAGTTAGACCACACGTTGTTGAAGAGTTTTATTTGAATGGTGAATTTGAGTCTTAATTAAATCCAATTTGTGACACTTACGTTTTAGAAGGAAGTAGTAACATGGTAAGCGTTCCTTGTGTCGCGCAGCAAGTACTGAAAATAGATGGGGTGTATGATTAAGGAAGAAGAGTAAGTGCACCCTAAAAGTAAATAGGACATAGTTAAGAGGTAGGGATGTCTATACCAGAGGTGTCTGATCAATCCCATAACCGATTCTCTTTAATTGACTATACTGATTTATTCCGTATGAGCAGAAGCTACAATAGCAGCTTAACCAGCTTAAAGCGGTTTCAATGTTGCTCAAAACTTGTCTTAAATGCTTTTATCAATATGTATTATGAATCTTTCCTCTTCTTTGTTTTAGCATTATTCACATATCCGGTGCTTGTGTTGATAGACTATTTGTCTCTTATGGTTGTATGTACTTGTGTCTGTGTGTATTGCAATCATTAGTGCGCTAATAAGGTATACTTTTCCTCGCCAAGGAGTAGTCTCTTCTGAAGAGGTATAATCATGTCCATTTTCCCATTTCTCTTATTTTAGAAATTGCATGTTCCTTTTTCATGTATTTACTTCTTGGATTTATTTTACTTCACTTTGACGTGATTTACATAATGTGCTAGATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATAGTTTATAACTGCTCCTGAATTTTTGTATTGAATCAACTTAATTTGCAAGTGACCATTCTTAACTAT</genome_strand>
        <mrna_strand>GAAATGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATAGTTTATAACTGCTCCTGAATTTTTGTATTGAATCAACTTAATTTGCAAGTGACCATTCTTAACTAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203170" ref_strand="+" ref_description="SGN-E203170 [cLEB-3-F24]">
      <seq>gcacgagtgatgagtctctccattgcctcaccttcaggtgttaccttcacttccaagatgaacctctctaaatcctccttccatggcattcagattcctaaaatcatgcaggcgcgtgcagtaaacgcgccgcctcactcttgttcgtctttggtggtgaaaatggcgaagagggaagaggaattgaaggaaatcagaactaagactactgaagagcttcaggaagagattgtggaccttaaaggtgagctatttatgcttcgtcttcaaaggtcagctcgaaatgagttcaagtccagcgagtttctgcgaatgcgcaaaaggattgcaaggatgcttacagttaaacgggagagagaggttgaagaagggattaacaagaggatatccaggaagctcgaccggaaatggaagaaaagcattgtccctagaccaccaccctctttgaagaagctacgagaggaggaggcagcacaagaagctaaggaatctgcctcctgattacagacaattaaactagcaggcaaatgttgtatttcttttctggcctctcctctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1149" stop="3148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1446" g_stop="1769" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1770" i_stop="2612" i_length="843">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2613" g_stop="2848" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="560" r_length="236" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E203170" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1446" e_stop="1769"/>
          <exon e_start="2613" e_stop="2848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGGGTACTCTCTCTTACCTTTGGAATTAGCAAATTCGATTGTTAAAATCATAGTAATTGTGAAGTTTTCAACAGTGTACTGTTTTTAATGTCACCTCATTTCCAATTATTAGATTTAGGTGCATATCTGTGCGAAGAATGTAACAGTTCCTAAATATGGGAACACTGCAGAGAGACCTTAGCTAGTTAGACCACACGTTGTTGAAGAGTTTTATTTGAATGGTGAATTTGAGTCTTAATTAAATCCAATTTGTGACACTTACGTTTTAGAAGGAAGTAGTAACATGGTAAGCGTTCCTTGTGTCGCGCAGCAAGTACTGAAAATAGATGGGGTGTATGATTAAGGAAGAAGAGTAAGTGCACCCTAAAAGTAAATAGGACATAGTTAAGAGGTAGGGATGTCTATACCAGAGGTGTCTGATCAATCCCATAACCGATTCTCTTTAATTGACTATACTGATTTATTCCGTATGAGCAGAAGCTACAATAGCAGCTTAACCAGCTTAAAGCGGTTTCAATGTTGCTCAAAACTTGTCTTAAATGCTTTTATCAATATGTATTATGAATCTTTCCTCTTCTTTGTTTTAGCATTATTCACATATCCGGTGCTTGTGTTGATAGACTATTTGTCTCTTATGGTTGTATGTACTTGTGTCTGTGTGTATTGCAATCATTAGTGCGCTAATAAGGTATACTTTTCCTCGCCAAGGAGTAGTCTCTTCTGAAGAGGTATAATCATGTCCATTTTCCCATTTCTCTTATTTTAGAAATTGCATGTTCCTTTTTCATGTATTTACTTCTTGGATTTATTTTACTTCACTTTGACGTGATTTACATAATGTGCTAGATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCAT</genome_strand>
        <mrna_strand>GCACGAGTGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCACAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277276" ref_strand="+" ref_description="SGN-E277276 [cLEL-3-O20](-)">
      <seq>agaaactcgctggacttgaactcatttcgagctgacctttgaagacgaagcataaatagctcacctttaaggtccacaatctcttcctgaagctcttcagtagtcttagttctgatttccttcaattcctcttccctcttcgccattttcaccaccaaagacgaacaagagtgaggcggcgcgtttactgcacgcgcctgcatgattttaggaatctgaatgccatggaaggaggatttagagaggttcatcttggaagtgaaggtaacacctgaaggtgaggcaatggagagactcatcactcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2053" stop="1149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1753" g_stop="1446" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E277276" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1753" e_stop="1446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACTCGCTGGACTTGAACTCATTTCGAGCTGACCTTTGAAGACGAAGCATAAATAGCTCACCTTTAAGGTCCACAATCTCTTCCTGAAGCTCTTCAGTAGTCTTAGTTCTGATTTCCTTCAATTCCTCTTCCCTCTTCGCCATTTTCACCACCAAAGACGAACAAGAGTGAGGCGGCGCGTTTACTGCACGCGCCTGCATGATTTTAGGAATCTGAATGCCATGGAAGGAGGATTTAGAGAGGTTCATCTTGGAAGTGAAGGTAACACCTGAAGGTGAGGCAATGGAGAGACTCATCATCCTTTC</genome_strand>
        <mrna_strand>AGAAACTCGCTGGACTTGAACTCATTTCGAGCTGACCTTTGAAGACGAAGCATAAATAGCTCACCTTTAAGGTCCACAATCTCTTCCTGAAGCTCTTCAGTAGTCTTAGTTCTGATTTCCTTCAATTCCTCTTCCCTCTTCGCCATTTTCACCACCAAAGACGAACAAGAGTGAGGCGGCGCGTTTACTGCACGCGCCTGCATGATTTTAGGAATCTGAATGCCATGGAAGGAGGATTTAGAGAGGTTCATCTTGGAAGTGAAGGTAACACCTGAAGGTGAGGCAATGGAGAGACTCATCACTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738064" ref_strand="+" ref_description="SGN-E738064 [LC12BA02]">
      <seq>aaatgatgatgagtctctccattgcctcaccttcaggtgttaccttcacttccaagatgaacctctctaaatcctccttccatggcattcagattcctaaaatcatgcaggcgcgtgcagtaaacgcgccgcctcactcttgttcgtctttggtggtgaaaatggcgaagagggaagaggaattgaaggaaatcagaactaagactactgaagagcttcaggaagagattgtggaccttaaaggtgagctatttatgcttcgtcttcaaaggtcagctcgaaatgagttcaagtccagcgagtttctgcgaatgcgcaaaaggattgcaaggatgcttacagttaaacgggagagagaggttgaagaagggattaacaagaggatatccaggaagctcgaccggaaatggaagaaaagcattgtccctagaccaccaccctctttgaagaagctacgagaggaggaggcagcagaagaagctaaggaatctgcctcctgattacagacaattaaactagcaggcaaatgttgtatttcttttctggcctctcctctcatttgtttcttcctcatacgtatagtttataactgctcctgaatttttgtattgaatcaacttaatttgcaagtgaccattcttaactatgttcccagtcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1147" stop="3247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1447" g_stop="1769" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1770" i_stop="2612" i_length="843">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2613" g_stop="2946" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="657" r_length="334" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="658" polyA_stop="671"/>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E738064" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1447" e_stop="1769"/>
          <exon e_start="2613" e_stop="2946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGGGTACTCTCTCTTACCTTTGGAATTAGCAAATTCGATTGTTAAAATCATAGTAATTGTGAAGTTTTCAACAGTGTACTGTTTTTAATGTCACCTCATTTCCAATTATTAGATTTAGGTGCATATCTGTGCGAAGAATGTAACAGTTCCTAAATATGGGAACACTGCAGAGAGACCTTAGCTAGTTAGACCACACGTTGTTGAAGAGTTTTATTTGAATGGTGAATTTGAGTCTTAATTAAATCCAATTTGTGACACTTACGTTTTAGAAGGAAGTAGTAACATGGTAAGCGTTCCTTGTGTCGCGCAGCAAGTACTGAAAATAGATGGGGTGTATGATTAAGGAAGAAGAGTAAGTGCACCCTAAAAGTAAATAGGACATAGTTAAGAGGTAGGGATGTCTATACCAGAGGTGTCTGATCAATCCCATAACCGATTCTCTTTAATTGACTATACTGATTTATTCCGTATGAGCAGAAGCTACAATAGCAGCTTAACCAGCTTAAAGCGGTTTCAATGTTGCTCAAAACTTGTCTTAAATGCTTTTATCAATATGTATTATGAATCTTTCCTCTTCTTTGTTTTAGCATTATTCACATATCCGGTGCTTGTGTTGATAGACTATTTGTCTCTTATGGTTGTATGTACTTGTGTCTGTGTGTATTGCAATCATTAGTGCGCTAATAAGGTATACTTTTCCTCGCCAAGGAGTAGTCTCTTCTGAAGAGGTATAATCATGTCCATTTTCCCATTTCTCTTATTTTAGAAATTGCATGTTCCTTTTTCATGTATTTACTTCTTGGATTTATTTTACTTCACTTTGACGTGATTTACATAATGTGCTAGATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATAGTTTATAACTGCTCCTGAATTTTTGTATTGAATCAACTTAATTTGCAAGTGACCATTCTTAACTATGTTCCCAGTC</genome_strand>
        <mrna_strand>AAATGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATAGTTTATAACTGCTCCTGAATTTTTGTATTGAATCAACTTAATTTGCAAGTGACCATTCTTAACTATGTTCCCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345590" ref_strand="+" ref_description="SGN-E345590 [cTOF-18-E19]">
      <seq>aaggatgatgagtctctccattgcctcaccttcaggtgttaccttcacttccaagatgaacctctctaaatcctccttccatggcattcagattcctaaaatcatgcaggcgcgtgcagtaaacgcgccgcctcactcttgttcgtctttggtggtgaaaatggcgaagagggaagaggaattgaaggaaatcagaactaagactactgaagagcttcaggaagagattgtggaccttaaaggtgagctatttatgcttcgtcttcaaaggtcagctcgaaatgagttcaagtccagcgagtttctgcgaatgcgcaaaaggattgcaaggatgcttacagttaaacgggagagagaggttgaagaagggattaacaagaggatatccaggaagctcgaccggaaatggaagaaaagcattgtccctagaccaccaccctctttgaagaagctacgagaggaggaggcagcagaagaagctaaggaatctgcctcctgattacagacaattaaactagcaggcaaatgttgtatttcttttctggcctctcctctcatttgtttcttcctcatacgtatagtttataactgctcctgaatttttgtattgaatcaacttaatttgcaagtgaccattcttaactatgttcccagtcattgaggattgtgtcaattttcttcttgtcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1148" stop="3280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1448" g_stop="1769" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1770" i_stop="2612" i_length="843">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2613" g_stop="2982" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="692" r_length="370" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E345590" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1448" e_stop="1769"/>
          <exon e_start="2613" e_stop="2982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGGGTACTCTCTCTTACCTTTGGAATTAGCAAATTCGATTGTTAAAATCATAGTAATTGTGAAGTTTTCAACAGTGTACTGTTTTTAATGTCACCTCATTTCCAATTATTAGATTTAGGTGCATATCTGTGCGAAGAATGTAACAGTTCCTAAATATGGGAACACTGCAGAGAGACCTTAGCTAGTTAGACCACACGTTGTTGAAGAGTTTTATTTGAATGGTGAATTTGAGTCTTAATTAAATCCAATTTGTGACACTTACGTTTTAGAAGGAAGTAGTAACATGGTAAGCGTTCCTTGTGTCGCGCAGCAAGTACTGAAAATAGATGGGGTGTATGATTAAGGAAGAAGAGTAAGTGCACCCTAAAAGTAAATAGGACATAGTTAAGAGGTAGGGATGTCTATACCAGAGGTGTCTGATCAATCCCATAACCGATTCTCTTTAATTGACTATACTGATTTATTCCGTATGAGCAGAAGCTACAATAGCAGCTTAACCAGCTTAAAGCGGTTTCAATGTTGCTCAAAACTTGTCTTAAATGCTTTTATCAATATGTATTATGAATCTTTCCTCTTCTTTGTTTTAGCATTATTCACATATCCGGTGCTTGTGTTGATAGACTATTTGTCTCTTATGGTTGTATGTACTTGTGTCTGTGTGTATTGCAATCATTAGTGCGCTAATAAGGTATACTTTTCCTCGCCAAGGAGTAGTCTCTTCTGAAGAGGTATAATCATGTCCATTTTCCCATTTCTCTTATTTTAGAAATTGCATGTTCCTTTTTCATGTATTTACTTCTTGGATTTATTTTACTTCACTTTGACGTGATTTACATAATGTGCTAGATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATAGTTTATAACTGCTCCTGAATTTTTGTATTGAATCAACTTAATTTGCAAGTGACCATTCTTAACTATGTTCCCAGTCATTGAGGATTGTGTCAATTTTCTTCTTGTCAAAATT</genome_strand>
        <mrna_strand>AAGGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATAGTTTATAACTGCTCCTGAATTTTTGTATTGAATCAACTTAATTTGCAAGTGACCATTCTTAACTATGTTCCCAGTCATTGAGGATTGTGTCAATTTTCTTCTTGTCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340836" ref_strand="+" ref_description="SGN-E340836 [cTOF-5-N9]">
      <seq>aaggatgatgagtctctccattgcctcaccttcaggtgttaccttcacttccaagatgaacctctctaaatcctccttccatggcattcagattcctaaaatcatgcaggcgcgtgcagtaaacgcgccgcctcactcttgttcgtctttggtggtgaaaatggcgaagagggaagaggaattgaaggaaatcagaactaagactactgaagagcttcaggaagagattgtggaccttaaaggtgagctatttatgcttcgtcttcaaaggtcagctcgaaatgagttcaagtccagcgagtttctgcgaatgcgcaaaaggattgcaaggatgcttacagttaaacgggagagagaggttgaagaagggattaacaagaggatatccaggaagctcgaccggaaatggaagaaaagcattgtccctagaccaccaccctctttgaagaagctacgagaggaggaggcagcagaagaagctaaggaatctgcctcctgattacagacaattaaactagcaggcaaatgttgtatttcttttctggcctctnctctcatttgtttcttcctcatacgtatagtttataactgctcctgaatttttgtattgaatcaacttaatttgcaagtgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1148" stop="3224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1448" g_stop="1769" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1770" i_stop="2612" i_length="843">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2613" g_stop="2924" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="634" r_length="312" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E340836" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1448" e_stop="1769"/>
          <exon e_start="2613" e_stop="2924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGGGTACTCTCTCTTACCTTTGGAATTAGCAAATTCGATTGTTAAAATCATAGTAATTGTGAAGTTTTCAACAGTGTACTGTTTTTAATGTCACCTCATTTCCAATTATTAGATTTAGGTGCATATCTGTGCGAAGAATGTAACAGTTCCTAAATATGGGAACACTGCAGAGAGACCTTAGCTAGTTAGACCACACGTTGTTGAAGAGTTTTATTTGAATGGTGAATTTGAGTCTTAATTAAATCCAATTTGTGACACTTACGTTTTAGAAGGAAGTAGTAACATGGTAAGCGTTCCTTGTGTCGCGCAGCAAGTACTGAAAATAGATGGGGTGTATGATTAAGGAAGAAGAGTAAGTGCACCCTAAAAGTAAATAGGACATAGTTAAGAGGTAGGGATGTCTATACCAGAGGTGTCTGATCAATCCCATAACCGATTCTCTTTAATTGACTATACTGATTTATTCCGTATGAGCAGAAGCTACAATAGCAGCTTAACCAGCTTAAAGCGGTTTCAATGTTGCTCAAAACTTGTCTTAAATGCTTTTATCAATATGTATTATGAATCTTTCCTCTTCTTTGTTTTAGCATTATTCACATATCCGGTGCTTGTGTTGATAGACTATTTGTCTCTTATGGTTGTATGTACTTGTGTCTGTGTGTATTGCAATCATTAGTGCGCTAATAAGGTATACTTTTCCTCGCCAAGGAGTAGTCTCTTCTGAAGAGGTATAATCATGTCCATTTTCCCATTTCTCTTATTTTAGAAATTGCATGTTCCTTTTTCATGTATTTACTTCTTGGATTTATTTTACTTCACTTTGACGTGATTTACATAATGTGCTAGATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATAGTTTATAACTGCTCCTGAATTTTTGTATTGAATCAACTTAATTTGCAAGTGACC</genome_strand>
        <mrna_strand>AAGGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTNCTCTCATTTGTTTCTTCCTCATACGTATAGTTTATAACTGCTCCTGAATTTTTGTATTGAATCAACTTAATTTGCAAGTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327832" ref_strand="+" ref_description="SGN-E327832 [cTOC-20-J16]">
      <seq>aggatgatgagtctctccattgcctcaccttcaggtgttaccttcacttccaagatgaacctctctaaatcctccttccatggcattcagattcctaaaatcatgcaggcgcgtgcagtaaacgcgccgcctcactcttgttcgtctttggtggtgaaaatggcgaagagggaagaggaattgaaggaaatcagaactaagactactgaagagcttcaggaagagattgtggaccttaaaggtgagctatttatgcttcgtcttcaaaggtcagctcgaaatgagttcaagtccagcgagtttctgcgaatgcgcaaaaggattgcaaggatgcttacagttaaacgggagagagaggttgaagaagggattaacaagaggatatccaggaagctcgaccggaaatggaagaaaagcattgtccctagaccaccaccctctttgaagaagctacgagaggaggaggcagcagaagaagctaaggaatctgcctcctgattacagacaattaaactagcaggcaaatgttgtatttcttttctggcctctcctctcatttgtttcttcctcatacgtatagtttataactgctcctgaatttttgtattgaatcaacttaatttgcaagtgaccattcttaactatgttcccagtcattgaggattgtgtncattttcttcttgtcaaaatgtacctaaatggtgaaatctgnttcgctttctgccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1149" stop="3319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1449" g_stop="1769" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1770" i_stop="2612" i_length="843">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2613" g_stop="3019" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="727" r_length="406" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E327832" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1449" e_stop="1769"/>
          <exon e_start="2613" e_stop="3019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGGGTACTCTCTCTTACCTTTGGAATTAGCAAATTCGATTGTTAAAATCATAGTAATTGTGAAGTTTTCAACAGTGTACTGTTTTTAATGTCACCTCATTTCCAATTATTAGATTTAGGTGCATATCTGTGCGAAGAATGTAACAGTTCCTAAATATGGGAACACTGCAGAGAGACCTTAGCTAGTTAGACCACACGTTGTTGAAGAGTTTTATTTGAATGGTGAATTTGAGTCTTAATTAAATCCAATTTGTGACACTTACGTTTTAGAAGGAAGTAGTAACATGGTAAGCGTTCCTTGTGTCGCGCAGCAAGTACTGAAAATAGATGGGGTGTATGATTAAGGAAGAAGAGTAAGTGCACCCTAAAAGTAAATAGGACATAGTTAAGAGGTAGGGATGTCTATACCAGAGGTGTCTGATCAATCCCATAACCGATTCTCTTTAATTGACTATACTGATTTATTCCGTATGAGCAGAAGCTACAATAGCAGCTTAACCAGCTTAAAGCGGTTTCAATGTTGCTCAAAACTTGTCTTAAATGCTTTTATCAATATGTATTATGAATCTTTCCTCTTCTTTGTTTTAGCATTATTCACATATCCGGTGCTTGTGTTGATAGACTATTTGTCTCTTATGGTTGTATGTACTTGTGTCTGTGTGTATTGCAATCATTAGTGCGCTAATAAGGTATACTTTTCCTCGCCAAGGAGTAGTCTCTTCTGAAGAGGTATAATCATGTCCATTTTCCCATTTCTCTTATTTTAGAAATTGCATGTTCCTTTTTCATGTATTTACTTCTTGGATTTATTTTACTTCACTTTGACGTGATTTACATAATGTGCTAGATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATAGTTTATAACTGCTCCTGAATTTTTGTATTGAATCAACTTAATTTGCAAGTGACCATTCTTAACTATGTTCCCAGTCATTGAGGATTGTGTCAATTTTCTTCTTGTCAAAATTGTACCTAAATGGTGAAATCTGTTTCGCTTTCTGCCAA</genome_strand>
        <mrna_strand>AGGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATAGTTTATAACTGCTCCTGAATTTTTGTATTGAATCAACTTAATTTGCAAGTGACCATTCTTAACTATGTTCCCAGTCATTGAGGATTGTGTNCATTTTCTTCTTGTCAAAA-TGTACCTAAATGGTGAAATCTGNTTCGCTTTCTGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733924" ref_strand="+" ref_description="SGN-E733924 [LB11BC06]">
      <seq>ggatgatgagtctctccattgcctcaccttcaggtgttaccttcacttccaagatgaacctctctaaatcctccttccatggcattcagattcctaaaatcatgcaggcgcgtgcagtaaacgcgccgcctcactcttgttcgtctttggtggtgaaaatggcgaagagggaagaggaattgaaggaaatcagaactaagactactgaagagcttcaggaagagattgtggaccttaaaggtgagctatttatgcttcgtcttcaaaggtcagctcgaaatgagttcaagtccagcgagtttctgcgaatgcgcaaaaggattgcaaggatgcttacagttaaacgggagagagaggttgaagaagggattaacaagaggatatccaggaagctcgaccggaaatggaagaaaagcattgtccctagaccaccaccctctttgaagaagctacgagaggaggaggcagcagaagaagctaaggaatctgcctcctgattacagacaattaaactagcaggcaaatgttgtatttcttttctggcctctcctctcatttgtttcttcctcatacgtatagtttataactgctcctgaatttttgtattgaatcaacttaatttgcaagtgaccattcttaactatgttcccagtcattgaggattgtgtcaattttcttcttgtcaaaattgtacctaaatggtgaaatctgtttcgctttctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1150" stop="3316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1450" g_stop="1769" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1770" i_stop="2612" i_length="843">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2613" g_stop="3016" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="724" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E733924" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1450" e_stop="1769"/>
          <exon e_start="2613" e_stop="3016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGGGTACTCTCTCTTACCTTTGGAATTAGCAAATTCGATTGTTAAAATCATAGTAATTGTGAAGTTTTCAACAGTGTACTGTTTTTAATGTCACCTCATTTCCAATTATTAGATTTAGGTGCATATCTGTGCGAAGAATGTAACAGTTCCTAAATATGGGAACACTGCAGAGAGACCTTAGCTAGTTAGACCACACGTTGTTGAAGAGTTTTATTTGAATGGTGAATTTGAGTCTTAATTAAATCCAATTTGTGACACTTACGTTTTAGAAGGAAGTAGTAACATGGTAAGCGTTCCTTGTGTCGCGCAGCAAGTACTGAAAATAGATGGGGTGTATGATTAAGGAAGAAGAGTAAGTGCACCCTAAAAGTAAATAGGACATAGTTAAGAGGTAGGGATGTCTATACCAGAGGTGTCTGATCAATCCCATAACCGATTCTCTTTAATTGACTATACTGATTTATTCCGTATGAGCAGAAGCTACAATAGCAGCTTAACCAGCTTAAAGCGGTTTCAATGTTGCTCAAAACTTGTCTTAAATGCTTTTATCAATATGTATTATGAATCTTTCCTCTTCTTTGTTTTAGCATTATTCACATATCCGGTGCTTGTGTTGATAGACTATTTGTCTCTTATGGTTGTATGTACTTGTGTCTGTGTGTATTGCAATCATTAGTGCGCTAATAAGGTATACTTTTCCTCGCCAAGGAGTAGTCTCTTCTGAAGAGGTATAATCATGTCCATTTTCCCATTTCTCTTATTTTAGAAATTGCATGTTCCTTTTTCATGTATTTACTTCTTGGATTTATTTTACTTCACTTTGACGTGATTTACATAATGTGCTAGATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATAGTTTATAACTGCTCCTGAATTTTTGTATTGAATCAACTTAATTTGCAAGTGACCATTCTTAACTATGTTCCCAGTCATTGAGGATTGTGTCAATTTTCTTCTTGTCAAAATTGTACCTAAATGGTGAAATCTGTTTCGCTTTCTGC</genome_strand>
        <mrna_strand>GGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATAGTTTATAACTGCTCCTGAATTTTTGTATTGAATCAACTTAATTTGCAAGTGACCATTCTTAACTATGTTCCCAGTCATTGAGGATTGTGTCAATTTTCTTCTTGTCAAAATTGTACCTAAATGGTGAAATCTGTTTCGCTTTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293887" ref_strand="+" ref_description="SGN-E293887 [cLET-13-I17]">
      <seq>ggatgatgagtctctccattgcctcaccttcaggtgttaccttcacttccaagatgaacctctctaaatcctccttccatggcattcagattcctaaaatcatgcaggcgcgtgcagtaaacgcgccgcctcactcttgttcgtctttggtggtgaaaatggcgaagagggaagaggaattgaaggaaatcagaactaagactactgaagagcttcaggaagagattgtggaccttaaaggtgagctatttatgcttcgtcttcaaaggtcagctcgaaatgagttcaagtccagcgagtttctgcgaatgcgcaaaaggattgcaaggatgcttacagttaaacgggagagagaggttgaagaagggattaacaagaggatatccaggaagctcgaccggaaatggaagaaaagcattgtccctagaccaccaccctctttgaagaagctacgagaggaggaggcagcagaagaagctaaggaatctgcctcctgattacagacaattaaactagcaggcaaatgttgtatttcttttctggcctctcctctcatttgtttcttcctcatacgtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1150" stop="3170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1450" g_stop="1769" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1770" i_stop="2612" i_length="843">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2613" g_stop="2870" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="578" r_length="258" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E293887" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1450" e_stop="1769"/>
          <exon e_start="2613" e_stop="2870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGGGTACTCTCTCTTACCTTTGGAATTAGCAAATTCGATTGTTAAAATCATAGTAATTGTGAAGTTTTCAACAGTGTACTGTTTTTAATGTCACCTCATTTCCAATTATTAGATTTAGGTGCATATCTGTGCGAAGAATGTAACAGTTCCTAAATATGGGAACACTGCAGAGAGACCTTAGCTAGTTAGACCACACGTTGTTGAAGAGTTTTATTTGAATGGTGAATTTGAGTCTTAATTAAATCCAATTTGTGACACTTACGTTTTAGAAGGAAGTAGTAACATGGTAAGCGTTCCTTGTGTCGCGCAGCAAGTACTGAAAATAGATGGGGTGTATGATTAAGGAAGAAGAGTAAGTGCACCCTAAAAGTAAATAGGACATAGTTAAGAGGTAGGGATGTCTATACCAGAGGTGTCTGATCAATCCCATAACCGATTCTCTTTAATTGACTATACTGATTTATTCCGTATGAGCAGAAGCTACAATAGCAGCTTAACCAGCTTAAAGCGGTTTCAATGTTGCTCAAAACTTGTCTTAAATGCTTTTATCAATATGTATTATGAATCTTTCCTCTTCTTTGTTTTAGCATTATTCACATATCCGGTGCTTGTGTTGATAGACTATTTGTCTCTTATGGTTGTATGTACTTGTGTCTGTGTGTATTGCAATCATTAGTGCGCTAATAAGGTATACTTTTCCTCGCCAAGGAGTAGTCTCTTCTGAAGAGGTATAATCATGTCCATTTTCCCATTTCTCTTATTTTAGAAATTGCATGTTCCTTTTTCATGTATTTACTTCTTGGATTTATTTTACTTCACTTTGACGTGATTTACATAATGTGCTAGATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATA</genome_strand>
        <mrna_strand>GGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295616" ref_strand="+" ref_description="SGN-E295616 [cLET-25-E23]">
      <seq>ggatgatgagtctctccattgcctcaccttcaggtgttaccttcacttccaagatgaacctctctaaatcctccttccatggcattcagattcctaaaatcatgcaggcgcgtgcagtaaacgcgccgcctcactcttgttcgtctttggtggtgaaaatggcgaagagggaagaggaattgaaggaaatcagaactaagactactgaagagcttcaggaagagattgtggaccttaaaggtgagctatttatgcttcgtcttcaaaggtcagctcgaaatgagttcaagtccagcgagtttctgcgaatgcgcaaaaggattgcaaggatgcttacagttaaacgggagagagaggttgaagaagggattaacaagaggatatccaggaagctcgaccggaaatggaagaaaagcattgtccctagaccaccaccctctttgaagaagctacgagaggaggaggcagcagaagaagctaaggaatctgcctcctgattacagacaattaaactagcaggcaaatgttgtatttcttttctggcctctcctctcatttgtttcttcctcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1150" stop="3164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1450" g_stop="1769" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1770" i_stop="2612" i_length="843">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2613" g_stop="2864" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="572" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E295616" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1450" e_stop="1769"/>
          <exon e_start="2613" e_stop="2864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGGGTACTCTCTCTTACCTTTGGAATTAGCAAATTCGATTGTTAAAATCATAGTAATTGTGAAGTTTTCAACAGTGTACTGTTTTTAATGTCACCTCATTTCCAATTATTAGATTTAGGTGCATATCTGTGCGAAGAATGTAACAGTTCCTAAATATGGGAACACTGCAGAGAGACCTTAGCTAGTTAGACCACACGTTGTTGAAGAGTTTTATTTGAATGGTGAATTTGAGTCTTAATTAAATCCAATTTGTGACACTTACGTTTTAGAAGGAAGTAGTAACATGGTAAGCGTTCCTTGTGTCGCGCAGCAAGTACTGAAAATAGATGGGGTGTATGATTAAGGAAGAAGAGTAAGTGCACCCTAAAAGTAAATAGGACATAGTTAAGAGGTAGGGATGTCTATACCAGAGGTGTCTGATCAATCCCATAACCGATTCTCTTTAATTGACTATACTGATTTATTCCGTATGAGCAGAAGCTACAATAGCAGCTTAACCAGCTTAAAGCGGTTTCAATGTTGCTCAAAACTTGTCTTAAATGCTTTTATCAATATGTATTATGAATCTTTCCTCTTCTTTGTTTTAGCATTATTCACATATCCGGTGCTTGTGTTGATAGACTATTTGTCTCTTATGGTTGTATGTACTTGTGTCTGTGTGTATTGCAATCATTAGTGCGCTAATAAGGTATACTTTTCCTCGCCAAGGAGTAGTCTCTTCTGAAGAGGTATAATCATGTCCATTTTCCCATTTCTCTTATTTTAGAAATTGCATGTTCCTTTTTCATGTATTTACTTCTTGGATTTATTTTACTTCACTTTGACGTGATTTACATAATGTGCTAGATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATA</genome_strand>
        <mrna_strand>GGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289837" ref_strand="+" ref_description="SGN-E289837 [cLET-9-B20]">
      <seq>ggatgatgagtctctccattgcctcaccttcaggtgttaccttcacttccaagatgaacctctctaaatcctccttccatggcattcagattcctaaaatcatgcaggcgcgtgcagtaaacgcgccgcctcactcttgttcgtctttggtggtgaaaatggcgaagagggaagaggaattgaaggaaatcagaactaagactactgaagagcttcaggaagagattgtggaccttaaaggtgagctatttatgcttcgtcttcaaaggtcagctcgaaatgagttcaagtccagcgagtttctgcgaatgcgcaaaaggattgcaaggatgcttacagttaaacgggagagagaggttgaagaagggattaacaagaggatatccaggaagctcgaccggaaatggaagaaaagcattgtccctagaccaccaccctctttgaagaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1150" stop="3042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1450" g_stop="1769" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1770" i_stop="2612" i_length="843">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2613" g_stop="2742" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="450" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E289837" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1450" e_stop="1769"/>
          <exon e_start="2613" e_stop="2742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGGGTACTCTCTCTTACCTTTGGAATTAGCAAATTCGATTGTTAAAATCATAGTAATTGTGAAGTTTTCAACAGTGTACTGTTTTTAATGTCACCTCATTTCCAATTATTAGATTTAGGTGCATATCTGTGCGAAGAATGTAACAGTTCCTAAATATGGGAACACTGCAGAGAGACCTTAGCTAGTTAGACCACACGTTGTTGAAGAGTTTTATTTGAATGGTGAATTTGAGTCTTAATTAAATCCAATTTGTGACACTTACGTTTTAGAAGGAAGTAGTAACATGGTAAGCGTTCCTTGTGTCGCGCAGCAAGTACTGAAAATAGATGGGGTGTATGATTAAGGAAGAAGAGTAAGTGCACCCTAAAAGTAAATAGGACATAGTTAAGAGGTAGGGATGTCTATACCAGAGGTGTCTGATCAATCCCATAACCGATTCTCTTTAATTGACTATACTGATTTATTCCGTATGAGCAGAAGCTACAATAGCAGCTTAACCAGCTTAAAGCGGTTTCAATGTTGCTCAAAACTTGTCTTAAATGCTTTTATCAATATGTATTATGAATCTTTCCTCTTCTTTGTTTTAGCATTATTCACATATCCGGTGCTTGTGTTGATAGACTATTTGTCTCTTATGGTTGTATGTACTTGTGTCTGTGTGTATTGCAATCATTAGTGCGCTAATAAGGTATACTTTTCCTCGCCAAGGAGTAGTCTCTTCTGAAGAGGTATAATCATGTCCATTTTCCCATTTCTCTTATTTTAGAAATTGCATGTTCCTTTTTCATGTATTTACTTCTTGGATTTATTTTACTTCACTTTGACGTGATTTACATAATGTGCTAGATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGC</genome_strand>
        <mrna_strand>GGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359427" ref_strand="+" ref_description="SGN-E359427 [cLHT-31-E22]">
      <seq>gatgatgagtctctccattgcctcaccttcaggtgttaccttcgcttccaagattaacctctctaaatcctccttccatggcattcagattcctaaaatcatgcaggcgcgtgcagtaaacgcgccgcctcactcttgttcgtctttggtggtgaaaatggcgaagagggaagaggaattgaaggaaatcagaactaagactactgaagagcttcaggaagagattgtggaccttaaaggtgagctatttatgcttcgtcttcaaaggtcagctcgaaatgagttcaagtccagcgagtttctgcgaatgcgcaaaaggattgcaaggatgcttacagttaaacgggagagagaggttgaagaagggattaacaagaggatatccaggaagctcgaccggaaatggaagaaaagcattgtccctagaccaccaccctctttgaagaagctacgagaggaggaggcagcagaagaagctaaggaatctgcctcctgattacagacacttaaactagcaggcaaatgttgtattttcttttctggcctctcctctcatttgtttcttcctcatacgtatagtttataactgctcctgaatttttgtattgaatcaacttaattttgcagtgaccattcttaactatgttcccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1151" stop="3243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1451" g_stop="1769" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1770" i_stop="2612" i_length="843">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2613" g_stop="2943" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="651" r_length="332" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="652" polyA_stop="661"/>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E359427" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1451" e_stop="1769"/>
          <exon e_start="2613" e_stop="2943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGGGTACTCTCTCTTACCTTTGGAATTAGCAAATTCGATTGTTAAAATCATAGTAATTGTGAAGTTTTCAACAGTGTACTGTTTTTAATGTCACCTCATTTCCAATTATTAGATTTAGGTGCATATCTGTGCGAAGAATGTAACAGTTCCTAAATATGGGAACACTGCAGAGAGACCTTAGCTAGTTAGACCACACGTTGTTGAAGAGTTTTATTTGAATGGTGAATTTGAGTCTTAATTAAATCCAATTTGTGACACTTACGTTTTAGAAGGAAGTAGTAACATGGTAAGCGTTCCTTGTGTCGCGCAGCAAGTACTGAAAATAGATGGGGTGTATGATTAAGGAAGAAGAGTAAGTGCACCCTAAAAGTAAATAGGACATAGTTAAGAGGTAGGGATGTCTATACCAGAGGTGTCTGATCAATCCCATAACCGATTCTCTTTAATTGACTATACTGATTTATTCCGTATGAGCAGAAGCTACAATAGCAGCTTAACCAGCTTAAAGCGGTTTCAATGTTGCTCAAAACTTGTCTTAAATGCTTTTATCAATATGTATTATGAATCTTTCCTCTTCTTTGTTTTAGCATTATTCACATATCCGGTGCTTGTGTTGATAGACTATTTGTCTCTTATGGTTGTATGTACTTGTGTCTGTGTGTATTGCAATCATTAGTGCGCTAATAAGGTATACTTTTCCTCGCCAAGGAGTAGTCTCTTCTGAAGAGGTATAATCATGTCCATTTTCCCATTTCTCTTATTTTAGAAATTGCATGTTCCTTTTTCATGTATTTACTTCTTGGATTTATTTTACTTCACTTTGACGTGATTTACATAATGTGCTAGATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTA-TTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATAGTTTATAACTGCTCCTGAATTTTTGTATTGAATCAACTTAATTTGCAAGTGACCATTCTTAACTATGTTCCCA</genome_strand>
        <mrna_strand>GATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCGCTTCCAAGATTAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACACTTAAACTAGCAGGCAAATGTTGTATTTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATAGTTTATAACTGCTCCTGAATTTTTGTATTGAATCAACTTAATTTTGCAGTGACCATTCTTAACTATGTTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287312" ref_strand="+" ref_description="SGN-E287312 [cLES-15-O16]">
      <seq>gatgatgagtctctccattgcctcaccttcaggtgttaccttcacttccaagatgaacctctctaaatcctccttccatggcattcagattcctaaaatcatgcaggcgcgtgcagtaaacgcgccgcctcactcttgttcgtctttggtggtgaaaatggcgaagagggaagaggaattgaaggaaatcagaactaagactactgaagagcttcaggaagagattgtggaccttaaaggtgagctatttatgcttcgtcttcaaaggtcagctcgaaatgagttcaagtccagcgagtttctgcgaatgcgcaaaaggattgcaaggatgcttacagttaaacgggagagagaggttgaagaagggattaacaagaggatatccaggaagctcgaccggaaatggaagaaaagcattgtccctagaccaccaccctctttgaagaagctacgagaggaggaggcagcagaagaagctaaggaatctgcctcctgattacagacaattaaactagcaggcaaatgttgtatttcttttctggcctctcctctcatttgtttcttcctcatacgtatagtttataactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1151" stop="3182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1451" g_stop="1769" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1770" i_stop="2612" i_length="843">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2613" g_stop="2882" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="589" r_length="270" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E287312" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1451" e_stop="1769"/>
          <exon e_start="2613" e_stop="2882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGGGTACTCTCTCTTACCTTTGGAATTAGCAAATTCGATTGTTAAAATCATAGTAATTGTGAAGTTTTCAACAGTGTACTGTTTTTAATGTCACCTCATTTCCAATTATTAGATTTAGGTGCATATCTGTGCGAAGAATGTAACAGTTCCTAAATATGGGAACACTGCAGAGAGACCTTAGCTAGTTAGACCACACGTTGTTGAAGAGTTTTATTTGAATGGTGAATTTGAGTCTTAATTAAATCCAATTTGTGACACTTACGTTTTAGAAGGAAGTAGTAACATGGTAAGCGTTCCTTGTGTCGCGCAGCAAGTACTGAAAATAGATGGGGTGTATGATTAAGGAAGAAGAGTAAGTGCACCCTAAAAGTAAATAGGACATAGTTAAGAGGTAGGGATGTCTATACCAGAGGTGTCTGATCAATCCCATAACCGATTCTCTTTAATTGACTATACTGATTTATTCCGTATGAGCAGAAGCTACAATAGCAGCTTAACCAGCTTAAAGCGGTTTCAATGTTGCTCAAAACTTGTCTTAAATGCTTTTATCAATATGTATTATGAATCTTTCCTCTTCTTTGTTTTAGCATTATTCACATATCCGGTGCTTGTGTTGATAGACTATTTGTCTCTTATGGTTGTATGTACTTGTGTCTGTGTGTATTGCAATCATTAGTGCGCTAATAAGGTATACTTTTCCTCGCCAAGGAGTAGTCTCTTCTGAAGAGGTATAATCATGTCCATTTTCCCATTTCTCTTATTTTAGAAATTGCATGTTCCTTTTTCATGTATTTACTTCTTGGATTTATTTTACTTCACTTTGACGTGATTTACATAATGTGCTAGATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATAGTTTATAACTGC</genome_strand>
        <mrna_strand>GATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATAGTTTATAACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281682" ref_strand="+" ref_description="SGN-E281682 [cLER-14-N9]">
      <seq>atgatgagtctctccattgcctcaccttcaggtgttaccttcacttccaagatgaacctctctaaatcctccttccatggcattcagattcctaaaatcatgcaggcgcgtgcagtaaacgcgccgcctcactcttgttcgtctttggtggtgaaaatggcgaagagggaagaggaattgaaggaaatcagaactaagactactgaagagcttcaggaagagattgtggaccttaaaggtgagctatttatgcttcgtcttcaaaggtcagctcgaaatgagttcaagtccagcgagtttctgcgaatgcgcaaaaggattgcaaggatgcttacagttaaacgggagagagaggttgaagaagggattaacaagaggatatccaggaagctcgaccggaaatggaagaaaagcattgtccctagaccaccaccctctttgaagaagctacgagaggaggaggcagcagaagaagctaaggaatctgcctcctgattacagacaattaaactagcaggcaaatgttgtatttcttttctggcctctcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1152" stop="3145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1452" g_stop="1769" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1770" i_stop="2612" i_length="843">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2613" g_stop="2845" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="551" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E281682" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1452" e_stop="1769"/>
          <exon e_start="2613" e_stop="2845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGGGTACTCTCTCTTACCTTTGGAATTAGCAAATTCGATTGTTAAAATCATAGTAATTGTGAAGTTTTCAACAGTGTACTGTTTTTAATGTCACCTCATTTCCAATTATTAGATTTAGGTGCATATCTGTGCGAAGAATGTAACAGTTCCTAAATATGGGAACACTGCAGAGAGACCTTAGCTAGTTAGACCACACGTTGTTGAAGAGTTTTATTTGAATGGTGAATTTGAGTCTTAATTAAATCCAATTTGTGACACTTACGTTTTAGAAGGAAGTAGTAACATGGTAAGCGTTCCTTGTGTCGCGCAGCAAGTACTGAAAATAGATGGGGTGTATGATTAAGGAAGAAGAGTAAGTGCACCCTAAAAGTAAATAGGACATAGTTAAGAGGTAGGGATGTCTATACCAGAGGTGTCTGATCAATCCCATAACCGATTCTCTTTAATTGACTATACTGATTTATTCCGTATGAGCAGAAGCTACAATAGCAGCTTAACCAGCTTAAAGCGGTTTCAATGTTGCTCAAAACTTGTCTTAAATGCTTTTATCAATATGTATTATGAATCTTTCCTCTTCTTTGTTTTAGCATTATTCACATATCCGGTGCTTGTGTTGATAGACTATTTGTCTCTTATGGTTGTATGTACTTGTGTCTGTGTGTATTGCAATCATTAGTGCGCTAATAAGGTATACTTTTCCTCGCCAAGGAGTAGTCTCTTCTGAAGAGGTATAATCATGTCCATTTTCCCATTTCTCTTATTTTAGAAATTGCATGTTCCTTTTTCATGTATTTACTTCTTGGATTTATTTTACTTCACTTTGACGTGATTTACATAATGTGCTAGATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCT</genome_strand>
        <mrna_strand>ATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282074" ref_strand="+" ref_description="SGN-E282074 [cLES-2-L14]">
      <seq>gagtctctccattgcctcaccttcaggtgttaccttcacttccaagatgaacctctctaaatcctccttccatggcattcagattcctaaaatcatgcaggcgcgtgcagtaaacgcgccgcctcactcttgttcgtctttggtggtgaaaatggcgaagagggaagaggaattgaaggaaatcagaactaagactactgaagagcttcaggaagagattgtggaccttaaaggtgagctatttatgcttcgtcttcaaaggtcagctcgaaatgagttcaagtccagcgagtttctgcgaatgcgcaaaaggattgcaaggatgcttacagttaaacgggagagagaggttgaagaagggattaacaagaggatatccaggaagctcgaccggaaatggaagaaaagcattgtccctagaccaccaccctctttgaagaagctacgagaggaggaggcagcagaagaagctaaggaatctgcctcctgattacagaccattaaactagcaggcaaatgttgtatttcttttctggcctctcctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1157" stop="3146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1457" g_stop="1769" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1770" i_stop="2612" i_length="843">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2613" g_stop="2846" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="547" r_length="234" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E282074" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1457" e_stop="1769"/>
          <exon e_start="2613" e_stop="2846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGGGTACTCTCTCTTACCTTTGGAATTAGCAAATTCGATTGTTAAAATCATAGTAATTGTGAAGTTTTCAACAGTGTACTGTTTTTAATGTCACCTCATTTCCAATTATTAGATTTAGGTGCATATCTGTGCGAAGAATGTAACAGTTCCTAAATATGGGAACACTGCAGAGAGACCTTAGCTAGTTAGACCACACGTTGTTGAAGAGTTTTATTTGAATGGTGAATTTGAGTCTTAATTAAATCCAATTTGTGACACTTACGTTTTAGAAGGAAGTAGTAACATGGTAAGCGTTCCTTGTGTCGCGCAGCAAGTACTGAAAATAGATGGGGTGTATGATTAAGGAAGAAGAGTAAGTGCACCCTAAAAGTAAATAGGACATAGTTAAGAGGTAGGGATGTCTATACCAGAGGTGTCTGATCAATCCCATAACCGATTCTCTTTAATTGACTATACTGATTTATTCCGTATGAGCAGAAGCTACAATAGCAGCTTAACCAGCTTAAAGCGGTTTCAATGTTGCTCAAAACTTGTCTTAAATGCTTTTATCAATATGTATTATGAATCTTTCCTCTTCTTTGTTTTAGCATTATTCACATATCCGGTGCTTGTGTTGATAGACTATTTGTCTCTTATGGTTGTATGTACTTGTGTCTGTGTGTATTGCAATCATTAGTGCGCTAATAAGGTATACTTTTCCTCGCCAAGGAGTAGTCTCTTCTGAAGAGGTATAATCATGTCCATTTTCCCATTTCTCTTATTTTAGAAATTGCATGTTCCTTTTTCATGTATTTACTTCTTGGATTTATTTTACTTCACTTTGACGTGATTTACATAATGTGCTAGATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTC</genome_strand>
        <mrna_strand>GAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACCATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293605" ref_strand="+" ref_description="SGN-E293605 [cLET-15-D8]">
      <seq>agtctctccattgcctcaccttcaggtgttaccttcacttccaagatgaacctctctaaatcctccttccatggcattcagattcctaaaatcatgcaggcgcgtgcagtaaacgcgccgcctcactcttgttcgtctttggtggtgaaaatggcgaagagggaagaggaattgaaggaaatcagaactaagactactgaagagcttcaggaagagattgtggaccttaaaggtgagctatttatgcttcgtcttcaaaggtcagctcgaaatgagttcaagtccagcgagtttctgcgaatgcgcaaaaggattgcaaggatgcttacagttaaacgggagagagaggttgaagaagggattaacaagaggatatccaggaagctcgaccggaaatggaagaaaagcattgtccctagaccaccaccctctttgaagaagctacgagaggaggaggcagcagaagaagctaaggaatctgcctcctgattacagacaattaaactagcaggcaaatgttgtatttcttttctggcctctcctctcatttgtttcttcctcatacgtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1158" stop="3170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1458" g_stop="1769" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1770" i_stop="2612" i_length="843">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2613" g_stop="2870" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="570" r_length="258" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E293605" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1458" e_stop="1769"/>
          <exon e_start="2613" e_stop="2870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGGGTACTCTCTCTTACCTTTGGAATTAGCAAATTCGATTGTTAAAATCATAGTAATTGTGAAGTTTTCAACAGTGTACTGTTTTTAATGTCACCTCATTTCCAATTATTAGATTTAGGTGCATATCTGTGCGAAGAATGTAACAGTTCCTAAATATGGGAACACTGCAGAGAGACCTTAGCTAGTTAGACCACACGTTGTTGAAGAGTTTTATTTGAATGGTGAATTTGAGTCTTAATTAAATCCAATTTGTGACACTTACGTTTTAGAAGGAAGTAGTAACATGGTAAGCGTTCCTTGTGTCGCGCAGCAAGTACTGAAAATAGATGGGGTGTATGATTAAGGAAGAAGAGTAAGTGCACCCTAAAAGTAAATAGGACATAGTTAAGAGGTAGGGATGTCTATACCAGAGGTGTCTGATCAATCCCATAACCGATTCTCTTTAATTGACTATACTGATTTATTCCGTATGAGCAGAAGCTACAATAGCAGCTTAACCAGCTTAAAGCGGTTTCAATGTTGCTCAAAACTTGTCTTAAATGCTTTTATCAATATGTATTATGAATCTTTCCTCTTCTTTGTTTTAGCATTATTCACATATCCGGTGCTTGTGTTGATAGACTATTTGTCTCTTATGGTTGTATGTACTTGTGTCTGTGTGTATTGCAATCATTAGTGCGCTAATAAGGTATACTTTTCCTCGCCAAGGAGTAGTCTCTTCTGAAGAGGTATAATCATGTCCATTTTCCCATTTCTCTTATTTTAGAAATTGCATGTTCCTTTTTCATGTATTTACTTCTTGGATTTATTTTACTTCACTTTGACGTGATTTACATAATGTGCTAGATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATA</genome_strand>
        <mrna_strand>AGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280263" ref_strand="+" ref_description="SGN-E280263 [cLER-1-A23](-)">
      <seq>ctcttgttcgtctttggtggtgaaaatggcgaagaggcaagaggaattcaaggaaatcagaactaagactactgcagagcttcaggaagagattgtggaccttaaaggtgagctatttatgcttcgtcttcaaaggtcagctcgaaatcagttcaagtccagcgagtttctgcgaatgcgcaaaaggattgcaagcatgcttacagttaaccggaacagagaggttcaagaagggattaacaagtggatatccaggaagctcgaccgcaaatggaagaaaagcattgtccctagaccaccaccctctttgaagaagctacgatagaaggaggcagcagaagaagctaaggaatctgcctcctgattacagacaattaaactagcaggcaaatgttgtatttcttttctggcctctcctctcatttgtttcttcctcatacgtatagtttataactgctcctgaatttttgtattgaatcaacttaatttgcaagtgaccattcttaactatgttcccagtcattgaggattgtgtcaattttcttcatgtcaaaattgtacctaaatggtgaaatctgtttcgcttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1283" stop="3311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1583" g_stop="1769" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1770" i_stop="2612" i_length="843">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2613" g_stop="3020" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="595" r_length="408" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E280263" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1583" e_stop="1769"/>
          <exon e_start="2613" e_stop="3020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGGGTACTCTCTCTTACCTTTGGAATTAGCAAATTCGATTGTTAAAATCATAGTAATTGTGAAGTTTTCAACAGTGTACTGTTTTTAATGTCACCTCATTTCCAATTATTAGATTTAGGTGCATATCTGTGCGAAGAATGTAACAGTTCCTAAATATGGGAACACTGCAGAGAGACCTTAGCTAGTTAGACCACACGTTGTTGAAGAGTTTTATTTGAATGGTGAATTTGAGTCTTAATTAAATCCAATTTGTGACACTTACGTTTTAGAAGGAAGTAGTAACATGGTAAGCGTTCCTTGTGTCGCGCAGCAAGTACTGAAAATAGATGGGGTGTATGATTAAGGAAGAAGAGTAAGTGCACCCTAAAAGTAAATAGGACATAGTTAAGAGGTAGGGATGTCTATACCAGAGGTGTCTGATCAATCCCATAACCGATTCTCTTTAATTGACTATACTGATTTATTCCGTATGAGCAGAAGCTACAATAGCAGCTTAACCAGCTTAAAGCGGTTTCAATGTTGCTCAAAACTTGTCTTAAATGCTTTTATCAATATGTATTATGAATCTTTCCTCTTCTTTGTTTTAGCATTATTCACATATCCGGTGCTTGTGTTGATAGACTATTTGTCTCTTATGGTTGTATGTACTTGTGTCTGTGTGTATTGCAATCATTAGTGCGCTAATAAGGTATACTTTTCCTCGCCAAGGAGTAGTCTCTTCTGAAGAGGTATAATCATGTCCATTTTCCCATTTCTCTTATTTTAGAAATTGCATGTTCCTTTTTCATGTATTTACTTCTTGGATTTATTTTACTTCACTTTGACGTGATTTACATAATGTGCTAGATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATAGTTTATAACTGCTCCTGAATTTTTGTATTGAATCAACTTAATTTGCAAGTGACCATTCTTAACTATGTTCCCAGTCATTGAGGATTGTGTCAATTTTCTTCTTGTCAAAATTGTACCTAAATGGTGAAATCTGTTTCGCTTTCTGCCAAG</genome_strand>
        <mrna_strand>CTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGCAAGAGGAATTCAAGGAAATCAGAACTAAGACTACTGCAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATCAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCATGCTTACAGTTAACCGGAACAGAGAGGTTCAAGAAGGGATTAACAAGTGGATATCCAGGAAGCTCGACCGCAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGATAGAAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATAGTTTATAACTGCTCCTGAATTTTTGTATTGAATCAACTTAATTTGCAAGTGACCATTCTTAACTATGTTCCCAGTCATTGAGGATTGTGTCAATTTTCTTCATGTCAAAATTGTACCTAAATGGTGAAATCTGTTTCGCTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203171" ref_strand="+" ref_description="SGN-E203171 [cLEB-3-F24](-)">
      <seq>gaaggaaatcagaactaagactactgaagagcttcaggaagagattgtggaccttaaaggtgagctatttatgcttcgtcttcaaaggtcagctcgaaatgagttcaagtccagcgagtttctgcgaatgcgcaaaaggattgcaaggatgcttacagttaaacgggagagagaggttgaagaagggattaacaagaggatatccaggaagctcgaccggaaatggaagaaaagcattgtccctagaccaccaccctctttgaagaagctacgagaggaggaggcagcagaagaagctaaggaatctgcctcctgattacagacaattaaactagcaggcaaatgttgtatttcttttctggcctctcctctcatttgtttcttcctcatacgtatagtttataactgctcctgaatttttgtattgaatcaacttaatttgcaagtgaccattcttaactatgttcccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1331" stop="3243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1631" g_stop="1769" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1770" i_stop="2612" i_length="843">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2613" g_stop="2943" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="470" r_length="331" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="471" polyA_stop="486"/>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E203171" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1631" e_stop="1769"/>
          <exon e_start="2613" e_stop="2943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGGGTACTCTCTCTTACCTTTGGAATTAGCAAATTCGATTGTTAAAATCATAGTAATTGTGAAGTTTTCAACAGTGTACTGTTTTTAATGTCACCTCATTTCCAATTATTAGATTTAGGTGCATATCTGTGCGAAGAATGTAACAGTTCCTAAATATGGGAACACTGCAGAGAGACCTTAGCTAGTTAGACCACACGTTGTTGAAGAGTTTTATTTGAATGGTGAATTTGAGTCTTAATTAAATCCAATTTGTGACACTTACGTTTTAGAAGGAAGTAGTAACATGGTAAGCGTTCCTTGTGTCGCGCAGCAAGTACTGAAAATAGATGGGGTGTATGATTAAGGAAGAAGAGTAAGTGCACCCTAAAAGTAAATAGGACATAGTTAAGAGGTAGGGATGTCTATACCAGAGGTGTCTGATCAATCCCATAACCGATTCTCTTTAATTGACTATACTGATTTATTCCGTATGAGCAGAAGCTACAATAGCAGCTTAACCAGCTTAAAGCGGTTTCAATGTTGCTCAAAACTTGTCTTAAATGCTTTTATCAATATGTATTATGAATCTTTCCTCTTCTTTGTTTTAGCATTATTCACATATCCGGTGCTTGTGTTGATAGACTATTTGTCTCTTATGGTTGTATGTACTTGTGTCTGTGTGTATTGCAATCATTAGTGCGCTAATAAGGTATACTTTTCCTCGCCAAGGAGTAGTCTCTTCTGAAGAGGTATAATCATGTCCATTTTCCCATTTCTCTTATTTTAGAAATTGCATGTTCCTTTTTCATGTATTTACTTCTTGGATTTATTTTACTTCACTTTGACGTGATTTACATAATGTGCTAGATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATAGTTTATAACTGCTCCTGAATTTTTGTATTGAATCAACTTAATTTGCAAGTGACCATTCTTAACTATGTTCCCA</genome_strand>
        <mrna_strand>GAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATAGTTTATAACTGCTCCTGAATTTTTGTATTGAATCAACTTAATTTGCAAGTGACCATTCTTAACTATGTTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548223" ref_strand="+" ref_description="SGN-E548223 [TUS-59-D14](-)">
      <seq>agcgaggccgaaccagctgtttcatagtgctagtacaagtgcagttccgcagcaacagttcctgcaacctcctaaaattcaaggacaagcaggccaaaccagttgtttcacagtgccagtacaagtgcagttccgcagcaacagttcctgcaacctactatgattcaaggacaagtgaggccaaaccagtatatgcagactccagggtcaaacagtggtttggggaataatttgatgaatgctgctatacaaggacttgtagaaggtgcagctcagcaggttggtcagactttcatgcaggggatcataggtggtggtgacaacaatggtggaaatgaaggatcatcaatcctgggaggcatttttggtgactcgtcagacacgcaatactagattaatattttcactttacttgtctgagtataacaggtcatattcggggttaaacataaaagtccgcaacggatcacactctttgatggggttgttttggttgaaaagtagatatatgcttttgtgtcttggtgtttgggttatatgctataatcaccttgtcaaaaccggagcctttggcttaaactatgcaatatagcacaagtaataagtctttttaagactggttaaatgttattgattttagtatatttaagatttcttattcatattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4060" stop="2783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3760" g_stop="3082" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E548223" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3760" e_stop="3082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGAGGCCGAACCAGCTGTTTCATAGTGCTAGTACAAGTGCAGTTCCGCAGCAACAGTTCCTGCAACCTCCTAAAATTCAAGGACAAGCGAGGCCAAACCAGTTGTTTCATAGTGCCAGTACAAGTGCAGTTCCGCAGCAACAGTTCCTGCAACCTACTATGATTCAAGGACAAGTGAGGCCAAACCAGTATATGCAGACTCCAGGGTCAAACAGTGGTTTGGGGAATAATTTGATGAATGCTGCTATACAAGGACTTGTAGAAGGTGCAGCTCAGCAGGTTGGTCAGACTTTCATGCAGGGGATCATAGGTGGTGGTGACAACAATGGTGGAAATGAAGGATCATCAATCCTGGGAGGCATTTTTGGTGACTCGTCAGACACGCAATACTAGATTAATATTTTCACTTTACTTGTCTGAGTATAACAGGTCATATTCGGGGTTAAACATAAAAGTCCGCAACGGATCACACTCTTTGATGGGGTTGTTTTGGTTGAAAAGTAGATATATGCTTTTGTGTCTTGGTGTTTGGGTTATATGCTATAATCACCTTGTCAAAACCGGAGCCTTTGGCTTAAACTATGCAATATAGCACAAGTAATAAGTCTTTTTAAGACTGGTTAAATGTTATTGATTTTAGTATATTTAAGATTTCTTATTCATTATTCAGAATGACAT</genome_strand>
        <mrna_strand>AGCGAGGCCGAACCAGCTGTTTCATAGTGCTAGTACAAGTGCAGTTCCGCAGCAACAGTTCCTGCAACCTCCTAAAATTCAAGGACAAGC-AGGCCAAACCAGTTGTTTCACAGTGCCAGTACAAGTGCAGTTCCGCAGCAACAGTTCCTGCAACCTACTATGATTCAAGGACAAGTGAGGCCAAACCAGTATATGCAGACTCCAGGGTCAAACAGTGGTTTGGGGAATAATTTGATGAATGCTGCTATACAAGGACTTGTAGAAGGTGCAGCTCAGCAGGTTGGTCAGACTTTCATGCAGGGGATCATAGGTGGTGGTGACAACAATGGTGGAAATGAAGGATCATCAATCCTGGGAGGCATTTTTGGTGACTCGTCAGACACGCAATACTAGATTAATATTTTCACTTTACTTGTCTGAGTATAACAGGTCATATTCGGGGTTAAACATAAAAGTCCGCAACGGATCACACTCTTTGATGGGGTTGTTTTGGTTGAAAAGTAGATATATGCTTTTGTGTCTTGGTGTTTGGGTTATATGCTATAATCACCTTGTCAAAACCGGAGCCTTTGGCTTAAACTATGCAATATAGCACAAGTAATAAGTCTTTTTAAGACTGGTTAAATGTTATTGATTTTAGTATATTTAAGATTTCTTATTCA-TATTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539455" ref_strand="+" ref_description="SGN-E539455 [TUS-59-D14]">
      <seq>aaagaagagaaaagaggcaagaagatgggaagggtgaaattgaacaatgatcaaacatcaagcctaaagcactttagtcatccacatgaattggagttatgcacccaactccaagatctaagcccttgttcaggatgcagacttccaccatcaggccaaatgtacatatgcaggccttgcaacttcactcttcatttaagctgtgctaaattcccacagctgattactcacccctctcatccgaaccactctctcaacctcctcccaacgtccaaataccccggtggccaattcaactgtgatgcctgtaaacgccatggaaccggcttcagctaccattgcagttattgtgagtttgatctccatgtgatttgtgcatctaaacccctcaaaatcacacacgaactgcaccaatgctcgcttgaactcaccttcaagaatccttatgctaatgccaaaggcttctcttgtgatgtatgccgcaagattggagtcaagcaatggctttatagatgtcctgcttgtgagtttgatgttcatttagattgtttagcttctgcccctaggcaggaagcttcacagtcaactgccctccagcaccaccattcattcccaggggccactaaccaattccagcaggctattatgggcacacaagcaaggtcacatcattttatgcatgccgcaagcacaggtgcaataactaacaacccattccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4803" stop="3484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4503" g_stop="3784" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E539455" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4503" e_stop="3784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGAGAAAAGAGGCAAGAAGATGGGAAGGGTGAAATTGAACAATGATCAAACATCAAGCCTAAAGCACTTTAGTCATCCACATGAATTGGAGTTATGCACCCAACTCCAAGATCTAAGCCCTTGTTCAGGATGCAGACTTCCACCATCAGGCCAAATGTACATATGCAGGCCTTGCAACTTCACTCTTCATTTAAGCTGTGCTAAATTCCCACAGCTGATTACTCACCCCTCTCATCCGAACCACTCTCTCAACCTCCTCCCAACGTCCAAATACCCCGGTGGCCAATTCAACTGTGATGCCTGTAAACGCCATGGAACCGGCTTCAGCTACCATTGCAGTTATTGTGAGTTTGATCTCCATGTGATTTGTGCATCTAAACCCCTCAAAATCACACACGAACTGCACCAATGCTCGCTTGAACTCACCTTCAAGAATCCTTATGCTAATGCCAAAGGCTTCTCTTGTGATGTATGCCGCAAGATTGGAGTCAAGCAATGGCTTTATAGATGTCCTGCTTGTGAGTTTGATGTTCATTTAGATTGTTTAGCTTCTGCCCCTAGGCAGGAAGCTTCACAGTCAACTGCCCTCCAGCACCACCATTCATTCCCAGGGGCCACTAACCAATTCCAGCAGGCTATTATGGGCACACAAGCAAGGTCACATCATTTTATGCATGCCGCAAGCACAGGTGCAATAACTAACAACCATTCCCTA</genome_strand>
        <mrna_strand>AAAGAAGAGAAAAGAGGCAAGAAGATGGGAAGGGTGAAATTGAACAATGATCAAACATCAAGCCTAAAGCACTTTAGTCATCCACATGAATTGGAGTTATGCACCCAACTCCAAGATCTAAGCCCTTGTTCAGGATGCAGACTTCCACCATCAGGCCAAATGTACATATGCAGGCCTTGCAACTTCACTCTTCATTTAAGCTGTGCTAAATTCCCACAGCTGATTACTCACCCCTCTCATCCGAACCACTCTCTCAACCTCCTCCCAACGTCCAAATACCCCGGTGGCCAATTCAACTGTGATGCCTGTAAACGCCATGGAACCGGCTTCAGCTACCATTGCAGTTATTGTGAGTTTGATCTCCATGTGATTTGTGCATCTAAACCCCTCAAAATCACACACGAACTGCACCAATGCTCGCTTGAACTCACCTTCAAGAATCCTTATGCTAATGCCAAAGGCTTCTCTTGTGATGTATGCCGCAAGATTGGAGTCAAGCAATGGCTTTATAGATGTCCTGCTTGTGAGTTTGATGTTCATTTAGATTGTTTAGCTTCTGCCCCTAGGCAGGAAGCTTCACAGTCAACTGCCCTCCAGCACCACCATTCATTCCCAGGGGCCACTAACCAATTCCAGCAGGCTATTATGGGCACACAAGCAAGGTCACATCATTTTATGCATGCCGCAAGCACAGGTGCAATAACTAACAACCCATTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282481" ref_strand="+" ref_description="SGN-E282481 [cLER-18-C6]">
      <seq>aagaagagaaaagaggcaagaagatgggaagggtgaaattgaacaatgatcaaacatcaagcctaaagcactttagtcatccacatgaattggagttatgcacccaactccaagatctaagcccttgttcaggatgcagacttccaccatcaggccaaatgtacatatgcaggccttgcaacttcactcttcatttaagctgtgctaaattcccacagctgattactcacccctctcatccgaaccactctctcaacctcctcccaacgtccaaataccccggtggccaattcaactgtgatgcctgtaaacgccatggaaccggcttcagctaccattgcagttattgtgagtttgatctccatgtgatttgtgcatctaaacccctcaaaatcacacacgaactgcaccaatgctcgcttgaactcaccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4802" stop="3769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4502" g_stop="4069" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E282481" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4502" e_stop="4069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAGAAAAGAGGCAAGAAGATGGGAAGGGTGAAATTGAACAATGATCAAACATCAAGCCTAAAGCACTTTAGTCATCCACATGAATTGGAGTTATGCACCCAACTCCAAGATCTAAGCCCTTGTTCAGGATGCAGACTTCCACCATCAGGCCAAATGTACATATGCAGGCCTTGCAACTTCACTCTTCATTTAAGCTGTGCTAAATTCCCACAGCTGATTACTCACCCCTCTCATCCGAACCACTCTCTCAACCTCCTCCCAACGTCCAAATACCCCGGTGGCCAATTCAACTGTGATGCCTGTAAACGCCATGGAACCGGCTTCAGCTACCATTGCAGTTATTGTGAGTTTGATCTCCATGTGATTTGTGCATCTAAACCCCTCAAAATCACACACGAACTGCACCAATGCTCGCTTGAACTCACCTTC</genome_strand>
        <mrna_strand>AAGAAGAGAAAAGAGGCAAGAAGATGGGAAGGGTGAAATTGAACAATGATCAAACATCAAGCCTAAAGCACTTTAGTCATCCACATGAATTGGAGTTATGCACCCAACTCCAAGATCTAAGCCCTTGTTCAGGATGCAGACTTCCACCATCAGGCCAAATGTACATATGCAGGCCTTGCAACTTCACTCTTCATTTAAGCTGTGCTAAATTCCCACAGCTGATTACTCACCCCTCTCATCCGAACCACTCTCTCAACCTCCTCCCAACGTCCAAATACCCCGGTGGCCAATTCAACTGTGATGCCTGTAAACGCCATGGAACCGGCTTCAGCTACCATTGCAGTTATTGTGAGTTTGATCTCCATGTGATTTGTGCATCTAAACCCCTCAAAATCACACACGAACTGCACCAATGCTCGCTTGAACTCACCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723170" ref_strand="+" ref_description="SGN-E723170 [FC19CE09]">
      <seq>gaatacgaagaagaaaagaaaaaattacaccaaaaaagagcaaaaatggcgttgcaatggatgatattgacgtacgtggtggcagcagaggcagcaatagctattctgctaacattgccatctcctaaacctctcaaatctcgttttgtttcactaatttcacttgcccttcaaccctctcttttcgtcgtccctttctctgtttttcagctcctcggtacttcatttctgtttgctacttccttatttcttataattatgtgatattgagacttaatttttgtttttgttcttcttctcttagatatttattggaaaaatgagcatcgattgatgtgtacgggtgagatttgcacagcttccgagagggaccgctatgagaaatcgatctacaaggctcaaagaaatgtgatcctatgtttagcggcatgccttctctactggtgtatctatcgtgtttgcaagtactacaaggagatacagagcattgaagaagtagaaaagagatacaaagaccagtagctgtctatctatgcaccaatcatattattcaaggctacttgtagctgaagtaacatctacaccatgcaatgttaacatattatgagtcttgtgtttgctttacaagccatcattatgaatcttttactactacatattgaaaagagtttgcgaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccccccccaaaggggcccctttaaaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12686" stop="57605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12985" g_stop="13371" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13372" i_stop="14979" i_length="1608">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14980" g_stop="15035" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="443" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15036" i_stop="15140" i_length="105">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15141" g_stop="15383" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="684" r_length="241" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15384" i_stop="18340" i_length="2957">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.089" a_score="0.67"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18341" g_stop="18388" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="732" r_length="48" r_score="0.667"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18389" i_stop="18455" i_length="67">
            <donor d_prob="0.348" d_score="0.67"/>
            <acceptor a_prob="0.221" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18456" g_stop="18481" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="733" r_stop="758" r_length="26" r_score="0.423"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E723170" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12985" e_stop="13371"/>
          <exon e_start="14980" e_stop="15035"/>
          <exon e_start="15141" e_stop="15383"/>
          <exon e_start="18341" e_stop="18388"/>
          <exon e_start="18456" e_stop="18481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATACGAAGAAGAAAAGAAAAAATTACACCAAAAAAGAGCAAAAATGGCGTTGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCGGTACTTCATTTCTGTTTGCTACTTCCTTATTTCTTATAATTATGTGATATTGAGACTTAATTTTTGTTTTTGTTCTTCTTCTCTTAGATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCGGTAAATTTTTCTTTTCCCCCTTTTTCGGGAACGATTTTATTTATAGTAATTTTTACTGAGTGAGTTTAAATTGTGTTGAAAAGGAAAATTGGTCCTACAGTGCCATTTCAACTGAATTCTGTGATTGATAACCAATTAGTTTCTACAATTTTCATGGAGACAAGATTTGCTTGATAACCCTGTGTTGCTTGTACCTAGATGTGGAGTTCAGTTTGAGTTGTTTAGGTGTTTGATTTACTGAAGACTGCAAGTTTAGGATTGAGATATAACTAAATTGTTATACACCTGTGTGCAAAATGGCTAATAAAGCATGATACTTAGGTTGCATATGCGTGATATTTGATTGTCATTCGTTAGAATTAGAAAAGATTTTGGATTTTCAAGTAAATCATTTGCAGTTTAAGAAGTTCGACTTTAAGTATATATTACTACTTCTTGGCTGTGTGAGTTTAGCAATAGTCATTCGTTAGAATAAGTCTTATTTTTTGTGTTCTAGTTGGTGATGCACTAAGGGTAATGCAGTTGTATATATTTTTCACTTAGAGGCAAGTTCGATGCTGGTGCTAGAAAAAGGGCAAAACCAGAAGTGTTTTTTTGTAGTCTGGCCATGAACTTATCTAGTGATGAACTGGTGATAGTCGGACATATATAAGATATCAGGTCTATTAGGAAAGGGAAGTTTTCCGTAGTTTAAGGGAACCACAAATAGGTAAAATAAACAGAAAGTAAGATAAGTTCCTAACAAATCAAGGAATGAAGGTAGTGATCATAACTTATTTTCATTTAGGGGAAGTGCTTAGTTTTTCATCAATTTATATAGCCTAATACCAATGCATCAAGCTGAAGGAAACCTTCAACTCAATTTCTTGATTGTTTGGTTGAAATTTCGGTACCACTTCAGAAATGAAGCAGCTGAAGGAACAACTGTTACTAGTCTAGTTCTGTGTTTTCAGAAAGGTGTGGCTGGCTACTGTTCTAAAGCGACTGCACCATTTTGCAAGTCTTCTGTATTTTGTTCTAACGCATCATCTAGCATGTTCGATGAAGACTACTGCACAAACATGTTTACTTCTTTAACATTATTAAAGTGGGGAAAATAGAGCATTTCAGTTGCAGGACCTCTTGTTTTTATTCAAGTACCTCAGTGGTGGCATTATGGTGAGACTGAGATCAATTAATGGCTGCTATTGGACAAGTGGATCAACCCTCTTCTTTTGTGTCCATGGATCAAATTTGTGTGATATGTTAAACGTACTGTAAATAAGAAATGGTCCTAATATTAAGTTTTTACCGGATGTCCCTGAAGGGACAGTCCCCAGATTAAGTTCATATCCTGTGATATGTAGAATCGCCTTGATCTGCAAACGTCAGTCTAGTTGTAGAGTACAAAATATTAAAGTTGGTAAATGCTGAATACTGAATTCCTGAGCTATATACCCTTGCATTTTCCGGATAATTGGGGAAATGTGCTGTGTGATGCATCGATTCCACTTGTTCTCTGTTTTTTTTCCCTTTGTTCTTGCACAGACATAGAAGCACATTGATGTTATGTATCTAGCTTATGACTTCCTTTTCGCTTCTGTTTGTGTCTCCTCTCATGTTACGCAGATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTGGTACATCAACAGAATCATTGTGTCCCTTATATGTAATTTTACTTTCGAAATGTCTCTCTTTTATAATTTAATGCATTAACAATGTGCTCTTTTATGTGTGTAAAGGTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAAAGTCTTAACAATATATGGAAATTTCTTTATAATTCACTTTCCAAAATCTTTGTTTACCAATCAGTACATTCCAATATCACAGGGTGAAATATAAAAGCCACAAGAAACAGGCCCAGAAACACCAAAAAAAAAAAATCTACTATGACATTTTTGCTACAGAAAGAATCAAGCAGTGTGCCTCTTCTTCTTCTTTGTCTTCAACCTATCACATAAGAAAGTTTTCTCTAATTGATCCACTCTCTGTGCCAGCGAATTCAGCATTCGTGTTTGTAGTTCATTTTTGTGGCACAGTTCAGTCATCATTCTCATCATATTCTCATTCTTCTCCACCATTTTCTCCAACAACTCTCGGTTTCTTCTACTCTCTTCTCCCCCTTCAAACTTGTGTGACCTTGTTTCATTCTCATTCTCATTCTCATTCACATCCTCAACTACTTCGATCAAATCCCCAACTTCACCTCTCTCCACACTTTCCTCCACACATTCGAGCATTGGACAGTCCGTTTCCTGCTTCACCTCCTGCAATCCTCCACGCTTCTCATTCAGCGGTGCTACATCGTGTTCACCCTCTATGGGTGTTTTCTCATCATTTGATGCTGCTTGAGTTTCTACATCCACACTCTGCTCTGACAGATGACAAAGTTCATTCTGATTTGTCAATTTTCCATCTTCATCCTGTTTTCCTGTTGAATTGGGGATGTCTCCGGTCTGATTGACTGGTTCAGAGAGTTCATCGGATTGATTCTCCTCTTCAGCTGCAATTTGATTTGCAGCAGCAACAATGCAGTCGACTTTCTCTTGCAAATAGATGGCCTTTCTAATCACAGCCTTTCTGCACTCCCTAACACCGGAATCAACTCCACGAATGGAGTCCAACTTGAAAAGCAGAGACATCAGCGTCTCATTCACCCGCAACCTTTCCCTTTCATCTCTACAAATCAACTCCGCCGTTTCTCTACACAAAAGCTTCCGCTCAACATCTTCCACCTCTTTTCGTATCAACTTGATTTTCTTCACGCTTTTTCTCACCAAAAAGCCTCTGAATACCTTCTGGATCTTCAACGCTGAACCGGACCTATCCGGCTCAGGTTTCTTTGTCGCCGAGGCCAAAACGGACCGCTCGGGATCCGAACTAACGAAATGGACCGGAATCTGAACAACCTTGGAGGCCTGCTTGATTCCGGCAGGTTTCTGGTGAATCGATTGCACTGGAATTCCTCTCATGTTTGAGGAATAGCCAGGGCGAGCTGACTGGGGCCAATAGCTTCCGTATAATGGATACTCCATTGTTAACTTTGATCGCTTTGTTGAGATATATATTGATCGCTAATGAAGTCTGAAGTTTTTGTTGTATATGCAATGAGAGAAGCTGTGAAGCTTTCTGGTATTTATGCGGTTGAGAAAGAAACTCAACTGAATTTTCCAGAAGGTTCAGGAATTTTTGGAAGGGCACAAAAATATCTTAGCTTTCGCTAGAGTGATGTAGAATGTTCTATCTCTCTATAATTCAATTAAAACATGTCTTTAACCAATTAATTAAATATAGAAAAATTTTAAAAATATTTTCCTTTCGTATCAAATACGCTCTTAATTAAAAAAATAATAATATTGAAACTCAATCACTTATTTTGCATTTTTTATGTTGAGTTCTATTTTTCAAACATATTATATTGGATCCTTATATACGAGAGCGGTGTGCATTATTTTGATTAAATTGAATTTTAATTTGGATTGAATTTTTGAATTCTTGAATTTATTTTGCATTTATAATTTACTTTGTTTGATTTTTTGATTTGGTCTCGATTTTTAGAAAAATAAAAATCGAAAAATTTAAAAAATCGAATTATATTATATAAATTATATATATACTGTACATATTAAATTGAAGTTAATCAATTTTGTCCCTTTTTAGTTATTTTTATTATAATTTAGTTTATTTTCTTATATTTGATCATCTATAATTGATATACTTTTAAGTATTGTGATTTACGTTTTACTTGTGATTTATATTTAAAAGTATATTTAAGAAAGTCAATTTATATATATATATATATATATATATATATATATAAATTTAAATTGTAAATAATTGTTATATTTCTTATTGACATAACCAATTAACCAAATCGAAAAAACTCAAACAAAAAAGAGAAAAAACAAAGCAAATCGAATTTATTTGATTTGGATTGGGTTACACTTCTTCAAAAATAAAAATCAAAAGTTTAAATCGAATAATATAAAATGAACCAAAAAATCGAATGTACACCCTTAAATATGACTAACGAAAAAAAAATCTTAGATTATTGACGATCACTCAGAGGTAAAATAATGTATTAAAACAATCAATCCAATCAATTAAATAAATTTAGTTTCTTAAATATTAAATGTGTATTACGGAAATTATTGTCCAGTCACATTTTTGGCATAGTTGACTGCAGATTATATTTATGGCTTCAATTTTCTTAAGTTATTAACTTCTTCGCATGTTAATAAAAACAATTATAATTTATATATAAATATAAACATGCATTTATTAATTTTACTATTTCAAATTTAATTGTAACGTAATGTACCTCTAATTAATTCGATCAAACATAAAGTTTTCATTTAATTCATATCTAATTACCTTCAAATTCATATATCTTACCATATCGTTTTATTAGGATTTATATTCAATTTTTTAAAGAGAGAATTTTTACAGTCGAGTTAAAATAGTTTTTTCATTATTACAAATAAAAATATCAATATTCATCTTTTCTTGATTCGATTTATCTCAATCTATTCTTATCGTACCTCTAAATTCGGCCAAAACATAAGGTTTTCAAGAATATTTCATTCTATTCCATTGCTTATACCTATTCTCGAGCTTTCCCACTCATACTCCCACTTCGATTCCCATTTTCTTCCTATAAATACTTCATTCATTAAATTTATATTCGTCAAATTACATTTACTTAGTATATTCAAATACCAAAAAGAGAAAAAAAATCAAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATT</genome_strand>
        <mrna_strand>GAATACGAAGAAGAAAAGAAAAAATTACACCAAAAAAGAGCAAAAATGGCGTTGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCGGTACTTCATTTCTGTTTGCTACTTCCTTATTTCTTATAATTATGTGATATTGAGACTTAATTTTTGTTTTTGTTCTTCTTCTCTTAGATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTG.........................................................................................................GTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCG-AANA-AAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCC...................................................................CCCCAAAGGGGCCCCTTTAAAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342418" ref_strand="+" ref_description="SGN-E342418 [cTOF-8-M15]">
      <seq>aaatacaccaaaaaagagcaaaaatggcgttgcaatggatgatattgacgtacgtggtggcagcagaggcagcaatagctattctgctaacattgccatctcctaaacctctcaaatctcgttttgtttcactaatttcacttgcccttcaaccctctcttttcgtcgtccctttctctgtttttcagctcctcgatatttattggaaaaatgagcatcgattgatgtgtacgggtgagatttgcacagcttccgagagggaccgctatgagaaatcgatctacaaggctcaaagaaatgtgatcctatgtttagcggcatgccttctctactggtgtatctatcgtgtttgcaagtactacaaggagatacagagcattgaagaagtagaaaagagatacaaagaccagtagctgtctatctatgcaccaatcatattattcaaggctacttgtagctgaagtaacatctacaccatgcaatgttaacatattatgagtcnttgtgtttgctttacaagccatcattatgaatcttttactactacatattgaaaagagtttgcgaaagagaagaaagtcttaacaatatatggaaatttctttataattcactttccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12707" stop="15728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13007" g_stop="13201" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13202" i_stop="13288" i_length="87">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13289" g_stop="13371" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="278" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13372" i_stop="14979" i_length="1608">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14980" g_stop="15035" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="334" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15036" i_stop="15140" i_length="105">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15141" g_stop="15435" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="630" r_length="296" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E342418" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13007" e_stop="13201"/>
          <exon e_start="13289" e_stop="13371"/>
          <exon e_start="14980" e_stop="15035"/>
          <exon e_start="15141" e_stop="15435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTACACCAAAAAAGAGCAAAAATGGCGTTGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCGGTACTTCATTTCTGTTTGCTACTTCCTTATTTCTTATAATTATGTGATATTGAGACTTAATTTTTGTTTTTGTTCTTCTTCTCTTAGATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCGGTAAATTTTTCTTTTCCCCCTTTTTCGGGAACGATTTTATTTATAGTAATTTTTACTGAGTGAGTTTAAATTGTGTTGAAAAGGAAAATTGGTCCTACAGTGCCATTTCAACTGAATTCTGTGATTGATAACCAATTAGTTTCTACAATTTTCATGGAGACAAGATTTGCTTGATAACCCTGTGTTGCTTGTACCTAGATGTGGAGTTCAGTTTGAGTTGTTTAGGTGTTTGATTTACTGAAGACTGCAAGTTTAGGATTGAGATATAACTAAATTGTTATACACCTGTGTGCAAAATGGCTAATAAAGCATGATACTTAGGTTGCATATGCGTGATATTTGATTGTCATTCGTTAGAATTAGAAAAGATTTTGGATTTTCAAGTAAATCATTTGCAGTTTAAGAAGTTCGACTTTAAGTATATATTACTACTTCTTGGCTGTGTGAGTTTAGCAATAGTCATTCGTTAGAATAAGTCTTATTTTTTGTGTTCTAGTTGGTGATGCACTAAGGGTAATGCAGTTGTATATATTTTTCACTTAGAGGCAAGTTCGATGCTGGTGCTAGAAAAAGGGCAAAACCAGAAGTGTTTTTTTGTAGTCTGGCCATGAACTTATCTAGTGATGAACTGGTGATAGTCGGACATATATAAGATATCAGGTCTATTAGGAAAGGGAAGTTTTCCGTAGTTTAAGGGAACCACAAATAGGTAAAATAAACAGAAAGTAAGATAAGTTCCTAACAAATCAAGGAATGAAGGTAGTGATCATAACTTATTTTCATTTAGGGGAAGTGCTTAGTTTTTCATCAATTTATATAGCCTAATACCAATGCATCAAGCTGAAGGAAACCTTCAACTCAATTTCTTGATTGTTTGGTTGAAATTTCGGTACCACTTCAGAAATGAAGCAGCTGAAGGAACAACTGTTACTAGTCTAGTTCTGTGTTTTCAGAAAGGTGTGGCTGGCTACTGTTCTAAAGCGACTGCACCATTTTGCAAGTCTTCTGTATTTTGTTCTAACGCATCATCTAGCATGTTCGATGAAGACTACTGCACAAACATGTTTACTTCTTTAACATTATTAAAGTGGGGAAAATAGAGCATTTCAGTTGCAGGACCTCTTGTTTTTATTCAAGTACCTCAGTGGTGGCATTATGGTGAGACTGAGATCAATTAATGGCTGCTATTGGACAAGTGGATCAACCCTCTTCTTTTGTGTCCATGGATCAAATTTGTGTGATATGTTAAACGTACTGTAAATAAGAAATGGTCCTAATATTAAGTTTTTACCGGATGTCCCTGAAGGGACAGTCCCCAGATTAAGTTCATATCCTGTGATATGTAGAATCGCCTTGATCTGCAAACGTCAGTCTAGTTGTAGAGTACAAAATATTAAAGTTGGTAAATGCTGAATACTGAATTCCTGAGCTATATACCCTTGCATTTTCCGGATAATTGGGGAAATGTGCTGTGTGATGCATCGATTCCACTTGTTCTCTGTTTTTTTTCCCTTTGTTCTTGCACAGACATAGAAGCACATTGATGTTATGTATCTAGCTTATGACTTCCTTTTCGCTTCTGTTTGTGTCTCCTCTCATGTTACGCAGATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTGGTACATCAACAGAATCATTGTGTCCCTTATATGTAATTTTACTTTCGAAATGTCTCTCTTTTATAATTTAATGCATTAACAATGTGCTCTTTTATGTGTGTAAAGGTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTC-TTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAAAGTCTTAACAATATATGGAAATTTCTTTATAATTCACTTTCCAAAATCTTTGT</genome_strand>
        <mrna_strand>AAATACACCAAAAAAGAGCAAAAATGGCGTTGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCG.......................................................................................ATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTG.........................................................................................................GTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCNTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAAAGTCTTAACAATATATGGAAATTTCTTTATAATTCACTTTCCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342264" ref_strand="+" ref_description="SGN-E342264 [cTOF-8-M13]">
      <seq>gagcaaaaatggcgtcgcaatggatgatattgacgtacgtggtggcagcagaggcagcaatagctattctgctaacattgccatctcctaaacctctcaaatctcgttttgtttcactaatttcacttgcccttcaaccctctcttttcgtcgtccctttctctgtttttcagctcctcgatatttattggaaaaatgagcatcgattgatgtgtacgggtgagatttgcacagcttccgagagggaccgctatgagaaatcgatctacaaggctcacagaaatgtgatcctatgtttagcggcatgccttctctactggtgtatctatcgagtttgcaagtactacacggagatacagagcattgaagaagtagaaaagagatacaacgaccagtggctgcctatctatgcaccaatcatattattcaaggctacttgtagctgaagtaacatctacaccatgcaatggtaacatattatgagtcttgtgtttgctttacaagccatcattatgaatcttctactactacatatcgaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12722" stop="15664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13022" g_stop="13201" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13202" i_stop="13288" i_length="87">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13289" g_stop="13371" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="263" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13372" i_stop="14979" i_length="1608">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14980" g_stop="15035" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="319" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15036" i_stop="15140" i_length="105">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15141" g_stop="15364" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="543" r_length="224" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E342264" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13022" e_stop="13201"/>
          <exon e_start="13289" e_stop="13371"/>
          <exon e_start="14980" e_stop="15035"/>
          <exon e_start="15141" e_stop="15364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAAAAATGGCGTTGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCGGTACTTCATTTCTGTTTGCTACTTCCTTATTTCTTATAATTATGTGATATTGAGACTTAATTTTTGTTTTTGTTCTTCTTCTCTTAGATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCGGTAAATTTTTCTTTTCCCCCTTTTTCGGGAACGATTTTATTTATAGTAATTTTTACTGAGTGAGTTTAAATTGTGTTGAAAAGGAAAATTGGTCCTACAGTGCCATTTCAACTGAATTCTGTGATTGATAACCAATTAGTTTCTACAATTTTCATGGAGACAAGATTTGCTTGATAACCCTGTGTTGCTTGTACCTAGATGTGGAGTTCAGTTTGAGTTGTTTAGGTGTTTGATTTACTGAAGACTGCAAGTTTAGGATTGAGATATAACTAAATTGTTATACACCTGTGTGCAAAATGGCTAATAAAGCATGATACTTAGGTTGCATATGCGTGATATTTGATTGTCATTCGTTAGAATTAGAAAAGATTTTGGATTTTCAAGTAAATCATTTGCAGTTTAAGAAGTTCGACTTTAAGTATATATTACTACTTCTTGGCTGTGTGAGTTTAGCAATAGTCATTCGTTAGAATAAGTCTTATTTTTTGTGTTCTAGTTGGTGATGCACTAAGGGTAATGCAGTTGTATATATTTTTCACTTAGAGGCAAGTTCGATGCTGGTGCTAGAAAAAGGGCAAAACCAGAAGTGTTTTTTTGTAGTCTGGCCATGAACTTATCTAGTGATGAACTGGTGATAGTCGGACATATATAAGATATCAGGTCTATTAGGAAAGGGAAGTTTTCCGTAGTTTAAGGGAACCACAAATAGGTAAAATAAACAGAAAGTAAGATAAGTTCCTAACAAATCAAGGAATGAAGGTAGTGATCATAACTTATTTTCATTTAGGGGAAGTGCTTAGTTTTTCATCAATTTATATAGCCTAATACCAATGCATCAAGCTGAAGGAAACCTTCAACTCAATTTCTTGATTGTTTGGTTGAAATTTCGGTACCACTTCAGAAATGAAGCAGCTGAAGGAACAACTGTTACTAGTCTAGTTCTGTGTTTTCAGAAAGGTGTGGCTGGCTACTGTTCTAAAGCGACTGCACCATTTTGCAAGTCTTCTGTATTTTGTTCTAACGCATCATCTAGCATGTTCGATGAAGACTACTGCACAAACATGTTTACTTCTTTAACATTATTAAAGTGGGGAAAATAGAGCATTTCAGTTGCAGGACCTCTTGTTTTTATTCAAGTACCTCAGTGGTGGCATTATGGTGAGACTGAGATCAATTAATGGCTGCTATTGGACAAGTGGATCAACCCTCTTCTTTTGTGTCCATGGATCAAATTTGTGTGATATGTTAAACGTACTGTAAATAAGAAATGGTCCTAATATTAAGTTTTTACCGGATGTCCCTGAAGGGACAGTCCCCAGATTAAGTTCATATCCTGTGATATGTAGAATCGCCTTGATCTGCAAACGTCAGTCTAGTTGTAGAGTACAAAATATTAAAGTTGGTAAATGCTGAATACTGAATTCCTGAGCTATATACCCTTGCATTTTCCGGATAATTGGGGAAATGTGCTGTGTGATGCATCGATTCCACTTGTTCTCTGTTTTTTTTCCCTTTGTTCTTGCACAGACATAGAAGCACATTGATGTTATGTATCTAGCTTATGACTTCCTTTTCGCTTCTGTTTGTGTCTCCTCTCATGTTACGCAGATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTGGTACATCAACAGAATCATTGTGTCCCTTATATGTAATTTTACTTTCGAAATGTCTCTCTTTTATAATTTAATGCATTAACAATGTGCTCTTTTATGTGTGTAAAGGTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGA</genome_strand>
        <mrna_strand>GAGCAAAAATGGCGTCGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCG.......................................................................................ATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTACAAGGCTCACAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTG.........................................................................................................GTGTATCTATCGAGTTTGCAAGTACTACACGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAACGACCAGTGGCTGCCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGGTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTCTACTACTACATATCGAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712346" ref_strand="+" ref_description="SGN-E712346 [FB04CD06]">
      <seq>gttgcaatggatgatattgacgtacgtggtggcagcagaggcagcaatagctattctgctaacattgccatctcctaaacctctcaaatctcgttttgtttcactaatttcacttgcccttcaaccctctcttttcgtcgtccctttctctgtttttcagctcctcgatatttattggaaaaatgagcatcgattgatgtgtacgggtgagatttgcacagcttccgagagggaccgctatgagaaatcgatctacaaggctcaaagaaatgtgatcctatgtttagcggcatgccttctctactggtgtatctatcgtgtttgcaagtactacaaggagatacagagcattgaagaagtagaaaagagatacaaagaccagtagctgtctatctatgcaccaatcatattattcaaggctacttgtagctgaagtaacatctacaccatgcaatgttaacatattatgagtcttgtgtttgctttacaagccatcattatgaatcttttactactacatattgaaaagagtttgcgaaagagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanctttggggggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12735" stop="57603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13035" g_stop="13201" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13202" i_stop="13288" i_length="87">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13289" g_stop="13371" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="250" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13372" i_stop="14979" i_length="1608">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14980" g_stop="15035" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="306" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15036" i_stop="15140" i_length="105">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15141" g_stop="15383" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="549" r_length="243" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15384" i_stop="18340" i_length="2957">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.089" a_score="0.64"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18341" g_stop="18400" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="609" r_length="60" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E712346" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13035" e_stop="13201"/>
          <exon e_start="13289" e_stop="13371"/>
          <exon e_start="14980" e_stop="15035"/>
          <exon e_start="15141" e_stop="15383"/>
          <exon e_start="18341" e_stop="18400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCGGTACTTCATTTCTGTTTGCTACTTCCTTATTTCTTATAATTATGTGATATTGAGACTTAATTTTTGTTTTTGTTCTTCTTCTCTTAGATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCGGTAAATTTTTCTTTTCCCCCTTTTTCGGGAACGATTTTATTTATAGTAATTTTTACTGAGTGAGTTTAAATTGTGTTGAAAAGGAAAATTGGTCCTACAGTGCCATTTCAACTGAATTCTGTGATTGATAACCAATTAGTTTCTACAATTTTCATGGAGACAAGATTTGCTTGATAACCCTGTGTTGCTTGTACCTAGATGTGGAGTTCAGTTTGAGTTGTTTAGGTGTTTGATTTACTGAAGACTGCAAGTTTAGGATTGAGATATAACTAAATTGTTATACACCTGTGTGCAAAATGGCTAATAAAGCATGATACTTAGGTTGCATATGCGTGATATTTGATTGTCATTCGTTAGAATTAGAAAAGATTTTGGATTTTCAAGTAAATCATTTGCAGTTTAAGAAGTTCGACTTTAAGTATATATTACTACTTCTTGGCTGTGTGAGTTTAGCAATAGTCATTCGTTAGAATAAGTCTTATTTTTTGTGTTCTAGTTGGTGATGCACTAAGGGTAATGCAGTTGTATATATTTTTCACTTAGAGGCAAGTTCGATGCTGGTGCTAGAAAAAGGGCAAAACCAGAAGTGTTTTTTTGTAGTCTGGCCATGAACTTATCTAGTGATGAACTGGTGATAGTCGGACATATATAAGATATCAGGTCTATTAGGAAAGGGAAGTTTTCCGTAGTTTAAGGGAACCACAAATAGGTAAAATAAACAGAAAGTAAGATAAGTTCCTAACAAATCAAGGAATGAAGGTAGTGATCATAACTTATTTTCATTTAGGGGAAGTGCTTAGTTTTTCATCAATTTATATAGCCTAATACCAATGCATCAAGCTGAAGGAAACCTTCAACTCAATTTCTTGATTGTTTGGTTGAAATTTCGGTACCACTTCAGAAATGAAGCAGCTGAAGGAACAACTGTTACTAGTCTAGTTCTGTGTTTTCAGAAAGGTGTGGCTGGCTACTGTTCTAAAGCGACTGCACCATTTTGCAAGTCTTCTGTATTTTGTTCTAACGCATCATCTAGCATGTTCGATGAAGACTACTGCACAAACATGTTTACTTCTTTAACATTATTAAAGTGGGGAAAATAGAGCATTTCAGTTGCAGGACCTCTTGTTTTTATTCAAGTACCTCAGTGGTGGCATTATGGTGAGACTGAGATCAATTAATGGCTGCTATTGGACAAGTGGATCAACCCTCTTCTTTTGTGTCCATGGATCAAATTTGTGTGATATGTTAAACGTACTGTAAATAAGAAATGGTCCTAATATTAAGTTTTTACCGGATGTCCCTGAAGGGACAGTCCCCAGATTAAGTTCATATCCTGTGATATGTAGAATCGCCTTGATCTGCAAACGTCAGTCTAGTTGTAGAGTACAAAATATTAAAGTTGGTAAATGCTGAATACTGAATTCCTGAGCTATATACCCTTGCATTTTCCGGATAATTGGGGAAATGTGCTGTGTGATGCATCGATTCCACTTGTTCTCTGTTTTTTTTCCCTTTGTTCTTGCACAGACATAGAAGCACATTGATGTTATGTATCTAGCTTATGACTTCCTTTTCGCTTCTGTTTGTGTCTCCTCTCATGTTACGCAGATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTGGTACATCAACAGAATCATTGTGTCCCTTATATGTAATTTTACTTTCGAAATGTCTCTCTTTTATAATTTAATGCATTAACAATGTGCTCTTTTATGTGTGTAAAGGTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAAAGTCTTAACAATATATGGAAATTTCTTTATAATTCACTTTCCAAAATCTTTGTTTACCAATCAGTACATTCCAATATCACAGGGTGAAATATAAAAGCCACAAGAAACAGGCCCAGAAACACCAAAAAAAAAAAATCTACTATGACATTTTTGCTACAGAAAGAATCAAGCAGTGTGCCTCTTCTTCTTCTTTGTCTTCAACCTATCACATAAGAAAGTTTTCTCTAATTGATCCACTCTCTGTGCCAGCGAATTCAGCATTCGTGTTTGTAGTTCATTTTTGTGGCACAGTTCAGTCATCATTCTCATCATATTCTCATTCTTCTCCACCATTTTCTCCAACAACTCTCGGTTTCTTCTACTCTCTTCTCCCCCTTCAAACTTGTGTGACCTTGTTTCATTCTCATTCTCATTCTCATTCACATCCTCAACTACTTCGATCAAATCCCCAACTTCACCTCTCTCCACACTTTCCTCCACACATTCGAGCATTGGACAGTCCGTTTCCTGCTTCACCTCCTGCAATCCTCCACGCTTCTCATTCAGCGGTGCTACATCGTGTTCACCCTCTATGGGTGTTTTCTCATCATTTGATGCTGCTTGAGTTTCTACATCCACACTCTGCTCTGACAGATGACAAAGTTCATTCTGATTTGTCAATTTTCCATCTTCATCCTGTTTTCCTGTTGAATTGGGGATGTCTCCGGTCTGATTGACTGGTTCAGAGAGTTCATCGGATTGATTCTCCTCTTCAGCTGCAATTTGATTTGCAGCAGCAACAATGCAGTCGACTTTCTCTTGCAAATAGATGGCCTTTCTAATCACAGCCTTTCTGCACTCCCTAACACCGGAATCAACTCCACGAATGGAGTCCAACTTGAAAAGCAGAGACATCAGCGTCTCATTCACCCGCAACCTTTCCCTTTCATCTCTACAAATCAACTCCGCCGTTTCTCTACACAAAAGCTTCCGCTCAACATCTTCCACCTCTTTTCGTATCAACTTGATTTTCTTCACGCTTTTTCTCACCAAAAAGCCTCTGAATACCTTCTGGATCTTCAACGCTGAACCGGACCTATCCGGCTCAGGTTTCTTTGTCGCCGAGGCCAAAACGGACCGCTCGGGATCCGAACTAACGAAATGGACCGGAATCTGAACAACCTTGGAGGCCTGCTTGATTCCGGCAGGTTTCTGGTGAATCGATTGCACTGGAATTCCTCTCATGTTTGAGGAATAGCCAGGGCGAGCTGACTGGGGCCAATAGCTTCCGTATAATGGATACTCCATTGTTAACTTTGATCGCTTTGTTGAGATATATATTGATCGCTAATGAAGTCTGAAGTTTTTGTTGTATATGCAATGAGAGAAGCTGTGAAGCTTTCTGGTATTTATGCGGTTGAGAAAGAAACTCAACTGAATTTTCCAGAAGGTTCAGGAATTTTTGGAAGGGCACAAAAATATCTTAGCTTTCGCTAGAGTGATGTAGAATGTTCTATCTCTCTATAATTCAATTAAAACATGTCTTTAACCAATTAATTAAATATAGAAAAATTTTAAAAATATTTTCCTTTCGTATCAAATACGCTCTTAATTAAAAAAATAATAATATTGAAACTCAATCACTTATTTTGCATTTTTTATGTTGAGTTCTATTTTTCAAACATATTATATTGGATCCTTATATACGAGAGCGGTGTGCATTATTTTGATTAAATTGAATTTTAATTTGGATTGAATTTTTGAATTCTTGAATTTATTTTGCATTTATAATTTACTTTGTTTGATTTTTTGATTTGGTCTCGATTTTTAGAAAAATAAAAATCGAAAAATTTAAAAAATCGAATTATATTATATAAATTATATATATACTGTACATATTAAATTGAAGTTAATCAATTTTGTCCCTTTTTAGTTATTTTTATTATAATTTAGTTTATTTTCTTATATTTGATCATCTATAATTGATATACTTTTAAGTATTGTGATTTACGTTTTACTTGTGATTTATATTTAAAAGTATATTTAAGAAAGTCAATTTATATATATATATATATATATATATATATATATAAATTTAAATTGTAAATAATTGTTATATTTCTTATTGACATAACCAATTAACCAAATCGAAAAAACTCAAACAAAAAAGAGAAAAAACAAAGCAAATCGAATTTATTTGATTTGGATTGGGTTACACTTCTTCAAAAATAAAAATCAAAAGTTTAAATCGAATAATATAAAATGAACCAAAAAATCGAATGTACACCCTTAAATATGACTAACGAAAAAAAAATCTTAGATTATTGACGATCACTCAGAGGTAAAATAATGTATTAAAACAATCAATCCAATCAATTAAATAAATTTAGTTTCTTAAATATTAAATGTGTATTACGGAAATTATTGTCCAGTCACATTTTTGGCATAGTTGACTGCAGATTATATTTATGGCTTCAATTTTCTTAAGTTATTAACTTCTTCGCATGTTAATAAAAACAATTATAATTTATATATAAATATAAACATGCATTTATTAATTTTACTATTTCAAATTTAATTGTAACGTAATGTACCTCTAATTAATTCGATCAAACATAAAGTTTTCATTTAATTCATATCTAATTACCTTCAAATTCATATATCTTACCATATCGTTTTATTAGGATTTATATTCAATTTTTTAAAGAGAGAATTTTTACAGTCGAGTTAAAATAGTTTTTTCATTATTACAAATAAAAATATCAATATTCATCTTTTCTTGATTCGATTTATCTCAATCTATTCTTATCGTACCTCTAAATTCGGCCAAAACATAAGGTTTTCAAGAATATTTCATTCTATTCCATTGCTTATACCTATTCTCGAGCTTTCCCACTCATACTCCCACTTCGATTCCCATTTTCTTCCTATAAATACTTCATTCATTAAATTTATATTCGTCAAATTACATTTACTTAGTATATTCAAATACCAAAAAGAGAAAAAAAATCAAAAAAAAAAAAGGAGGTTGGGACTGAA</genome_strand>
        <mrna_strand>GTTGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCG.......................................................................................ATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTG.........................................................................................................GTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANCTTTGGGGGGGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349342" ref_strand="+" ref_description="SGN-E349342 [cTOS-1-C24]">
      <seq>aatggatgatattgacgtacgtggtggcagcagaggcagcaatagctattctgctaacattgccatctcctaaacctctcaaatctcgttttgtttcactaatttcacttgcccttcaaccctctcttttcgtcgtccctttctctgtttttcagctcctcgatatttattggaaaaatgagcatcgattgatgtgtacgggtgagatttgcacagcttccgagagggaccgctatgagaaatcgatctacaaggctcaaagaaatgtgatcctatgtttagcggcatgccttctctactggtgtatctatcgtgtttgcaagtactacaaggagatacagagcattgaagaagtagaaaagagatacaaagaccagtagctgtctatctatgcaccaatcatattattcaaggctacttgtagctgaagtaacatctacaccatgcaatgttaacatattatgagtcttgtgtttgctttacaagccatcattatgaatcttttactactacatattgaaaagagtttgcgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12740" stop="15683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13040" g_stop="13201" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13202" i_stop="13288" i_length="87">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13289" g_stop="13371" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="245" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13372" i_stop="14979" i_length="1608">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14980" g_stop="15035" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="301" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15036" i_stop="15140" i_length="105">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15141" g_stop="15382" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="543" r_length="242" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E349342" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13040" e_stop="13201"/>
          <exon e_start="13289" e_stop="13371"/>
          <exon e_start="14980" e_stop="15035"/>
          <exon e_start="15141" e_stop="15382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCGGTACTTCATTTCTGTTTGCTACTTCCTTATTTCTTATAATTATGTGATATTGAGACTTAATTTTTGTTTTTGTTCTTCTTCTCTTAGATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCGGTAAATTTTTCTTTTCCCCCTTTTTCGGGAACGATTTTATTTATAGTAATTTTTACTGAGTGAGTTTAAATTGTGTTGAAAAGGAAAATTGGTCCTACAGTGCCATTTCAACTGAATTCTGTGATTGATAACCAATTAGTTTCTACAATTTTCATGGAGACAAGATTTGCTTGATAACCCTGTGTTGCTTGTACCTAGATGTGGAGTTCAGTTTGAGTTGTTTAGGTGTTTGATTTACTGAAGACTGCAAGTTTAGGATTGAGATATAACTAAATTGTTATACACCTGTGTGCAAAATGGCTAATAAAGCATGATACTTAGGTTGCATATGCGTGATATTTGATTGTCATTCGTTAGAATTAGAAAAGATTTTGGATTTTCAAGTAAATCATTTGCAGTTTAAGAAGTTCGACTTTAAGTATATATTACTACTTCTTGGCTGTGTGAGTTTAGCAATAGTCATTCGTTAGAATAAGTCTTATTTTTTGTGTTCTAGTTGGTGATGCACTAAGGGTAATGCAGTTGTATATATTTTTCACTTAGAGGCAAGTTCGATGCTGGTGCTAGAAAAAGGGCAAAACCAGAAGTGTTTTTTTGTAGTCTGGCCATGAACTTATCTAGTGATGAACTGGTGATAGTCGGACATATATAAGATATCAGGTCTATTAGGAAAGGGAAGTTTTCCGTAGTTTAAGGGAACCACAAATAGGTAAAATAAACAGAAAGTAAGATAAGTTCCTAACAAATCAAGGAATGAAGGTAGTGATCATAACTTATTTTCATTTAGGGGAAGTGCTTAGTTTTTCATCAATTTATATAGCCTAATACCAATGCATCAAGCTGAAGGAAACCTTCAACTCAATTTCTTGATTGTTTGGTTGAAATTTCGGTACCACTTCAGAAATGAAGCAGCTGAAGGAACAACTGTTACTAGTCTAGTTCTGTGTTTTCAGAAAGGTGTGGCTGGCTACTGTTCTAAAGCGACTGCACCATTTTGCAAGTCTTCTGTATTTTGTTCTAACGCATCATCTAGCATGTTCGATGAAGACTACTGCACAAACATGTTTACTTCTTTAACATTATTAAAGTGGGGAAAATAGAGCATTTCAGTTGCAGGACCTCTTGTTTTTATTCAAGTACCTCAGTGGTGGCATTATGGTGAGACTGAGATCAATTAATGGCTGCTATTGGACAAGTGGATCAACCCTCTTCTTTTGTGTCCATGGATCAAATTTGTGTGATATGTTAAACGTACTGTAAATAAGAAATGGTCCTAATATTAAGTTTTTACCGGATGTCCCTGAAGGGACAGTCCCCAGATTAAGTTCATATCCTGTGATATGTAGAATCGCCTTGATCTGCAAACGTCAGTCTAGTTGTAGAGTACAAAATATTAAAGTTGGTAAATGCTGAATACTGAATTCCTGAGCTATATACCCTTGCATTTTCCGGATAATTGGGGAAATGTGCTGTGTGATGCATCGATTCCACTTGTTCTCTGTTTTTTTTCCCTTTGTTCTTGCACAGACATAGAAGCACATTGATGTTATGTATCTAGCTTATGACTTCCTTTTCGCTTCTGTTTGTGTCTCCTCTCATGTTACGCAGATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTGGTACATCAACAGAATCATTGTGTCCCTTATATGTAATTTTACTTTCGAAATGTCTCTCTTTTATAATTTAATGCATTAACAATGTGCTCTTTTATGTGTGTAAAGGTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAA</genome_strand>
        <mrna_strand>AATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCG.......................................................................................ATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTG.........................................................................................................GTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713422" ref_strand="+" ref_description="SGN-E713422 [FB08CD03]">
      <seq>ctcctaaacctctcaaatctcgttttgtttcactaatttcacttgcccttcaaccctctcttttcgtcgtccctttctctgtttttcagctcctcggtacttcatttctgtttgctacttccttatttcttataattatgtgatattgagacttaatttttgtttttgttcttcttctcttagatatttattggaaaaatgagcatcgattgatgtgtacgggtgagatttgcacagcttccgagagggaccgctatgagaaatcgatctacaaggctcaaagaaatgtgatcctatgtttagcggcatgccttctctactggtgtatctatcgtgtttgcaagtactacaaggagatacagagcattgaagaagtagaaaagagatacaaagaccagtagctgtctatctatgcaccaatcatattattcaaggctacttgtagctgaagtaacatctacaccatgcaatgttaacatattatgagtcttgtgtttgctttacaagccatcattatgaatcttttactactacatattgaaaagagtttgcgaaagagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12806" stop="15683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13106" g_stop="13371" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13372" i_stop="14979" i_length="1608">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14980" g_stop="15035" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="322" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15036" i_stop="15140" i_length="105">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15141" g_stop="15391" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="573" r_length="251" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E713422" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13106" e_stop="13371"/>
          <exon e_start="14980" e_stop="15035"/>
          <exon e_start="15141" e_stop="15391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCGGTACTTCATTTCTGTTTGCTACTTCCTTATTTCTTATAATTATGTGATATTGAGACTTAATTTTTGTTTTTGTTCTTCTTCTCTTAGATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCGGTAAATTTTTCTTTTCCCCCTTTTTCGGGAACGATTTTATTTATAGTAATTTTTACTGAGTGAGTTTAAATTGTGTTGAAAAGGAAAATTGGTCCTACAGTGCCATTTCAACTGAATTCTGTGATTGATAACCAATTAGTTTCTACAATTTTCATGGAGACAAGATTTGCTTGATAACCCTGTGTTGCTTGTACCTAGATGTGGAGTTCAGTTTGAGTTGTTTAGGTGTTTGATTTACTGAAGACTGCAAGTTTAGGATTGAGATATAACTAAATTGTTATACACCTGTGTGCAAAATGGCTAATAAAGCATGATACTTAGGTTGCATATGCGTGATATTTGATTGTCATTCGTTAGAATTAGAAAAGATTTTGGATTTTCAAGTAAATCATTTGCAGTTTAAGAAGTTCGACTTTAAGTATATATTACTACTTCTTGGCTGTGTGAGTTTAGCAATAGTCATTCGTTAGAATAAGTCTTATTTTTTGTGTTCTAGTTGGTGATGCACTAAGGGTAATGCAGTTGTATATATTTTTCACTTAGAGGCAAGTTCGATGCTGGTGCTAGAAAAAGGGCAAAACCAGAAGTGTTTTTTTGTAGTCTGGCCATGAACTTATCTAGTGATGAACTGGTGATAGTCGGACATATATAAGATATCAGGTCTATTAGGAAAGGGAAGTTTTCCGTAGTTTAAGGGAACCACAAATAGGTAAAATAAACAGAAAGTAAGATAAGTTCCTAACAAATCAAGGAATGAAGGTAGTGATCATAACTTATTTTCATTTAGGGGAAGTGCTTAGTTTTTCATCAATTTATATAGCCTAATACCAATGCATCAAGCTGAAGGAAACCTTCAACTCAATTTCTTGATTGTTTGGTTGAAATTTCGGTACCACTTCAGAAATGAAGCAGCTGAAGGAACAACTGTTACTAGTCTAGTTCTGTGTTTTCAGAAAGGTGTGGCTGGCTACTGTTCTAAAGCGACTGCACCATTTTGCAAGTCTTCTGTATTTTGTTCTAACGCATCATCTAGCATGTTCGATGAAGACTACTGCACAAACATGTTTACTTCTTTAACATTATTAAAGTGGGGAAAATAGAGCATTTCAGTTGCAGGACCTCTTGTTTTTATTCAAGTACCTCAGTGGTGGCATTATGGTGAGACTGAGATCAATTAATGGCTGCTATTGGACAAGTGGATCAACCCTCTTCTTTTGTGTCCATGGATCAAATTTGTGTGATATGTTAAACGTACTGTAAATAAGAAATGGTCCTAATATTAAGTTTTTACCGGATGTCCCTGAAGGGACAGTCCCCAGATTAAGTTCATATCCTGTGATATGTAGAATCGCCTTGATCTGCAAACGTCAGTCTAGTTGTAGAGTACAAAATATTAAAGTTGGTAAATGCTGAATACTGAATTCCTGAGCTATATACCCTTGCATTTTCCGGATAATTGGGGAAATGTGCTGTGTGATGCATCGATTCCACTTGTTCTCTGTTTTTTTTCCCTTTGTTCTTGCACAGACATAGAAGCACATTGATGTTATGTATCTAGCTTATGACTTCCTTTTCGCTTCTGTTTGTGTCTCCTCTCATGTTACGCAGATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTGGTACATCAACAGAATCATTGTGTCCCTTATATGTAATTTTACTTTCGAAATGTCTCTCTTTTATAATTTAATGCATTAACAATGTGCTCTTTTATGTGTGTAAAGGTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAAAGTCTTAAC</genome_strand>
        <mrna_strand>CTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCGGTACTTCATTTCTGTTTGCTACTTCCTTATTTCTTATAATTATGTGATATTGAGACTTAATTTTTGTTTTTGTTCTTCTTCTCTTAGATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTG.........................................................................................................GTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200219" ref_strand="-" ref_description="SGN-E200219 [cLEC-12-K11]">
      <seq>ctctgtttttcagctcctcgatatttattggaaaaatgagcatcgattgatgtgtacgggtgagatttgcacagcttccgagagggaccgctatgagaaatcgatctacaaggctcaaagaaatgtgatcctatgtttagcggcatgccttctctactggtgtatctatcgtgtttgcaagtactacaaggagatacagagcattgaagaagtagaaaagagatacaaagaccagtagctgtctatctatgcaccaatcatattattcaaggctacttgtagctgaagtaacatctaccccatgcaatgttaacatattatgagtcttgtgtttgctttacaagccatcattatgaatcttttactactacatattgaaaagagtttgcgaaagagaagaaagtcttaacaatatatggaaatttctttataattccaaaaaaaaaaaaaaaaaaaaaaactcgagactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12970" stop="57602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13182" g_stop="13201" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13202" i_stop="13288" i_length="87">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13289" g_stop="13371" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="103" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13372" i_stop="14979" i_length="1608">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14980" g_stop="15035" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="159" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15036" i_stop="15140" i_length="105">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15141" g_stop="15417" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="436" r_length="277" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15418" i_stop="17523" i_length="2106">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17524" g_stop="17559" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="472" r_length="36" r_score="0.722"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E200219" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200219" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13182" e_stop="13201"/>
          <exon e_start="13289" e_stop="13371"/>
          <exon e_start="14980" e_stop="15035"/>
          <exon e_start="15141" e_stop="15417"/>
          <exon e_start="17524" e_stop="17559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTTTTTCAGCTCCTCGGTACTTCATTTCTGTTTGCTACTTCCTTATTTCTTATAATTATGTGATATTGAGACTTAATTTTTGTTTTTGTTCTTCTTCTCTTAGATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCGGTAAATTTTTCTTTTCCCCCTTTTTCGGGAACGATTTTATTTATAGTAATTTTTACTGAGTGAGTTTAAATTGTGTTGAAAAGGAAAATTGGTCCTACAGTGCCATTTCAACTGAATTCTGTGATTGATAACCAATTAGTTTCTACAATTTTCATGGAGACAAGATTTGCTTGATAACCCTGTGTTGCTTGTACCTAGATGTGGAGTTCAGTTTGAGTTGTTTAGGTGTTTGATTTACTGAAGACTGCAAGTTTAGGATTGAGATATAACTAAATTGTTATACACCTGTGTGCAAAATGGCTAATAAAGCATGATACTTAGGTTGCATATGCGTGATATTTGATTGTCATTCGTTAGAATTAGAAAAGATTTTGGATTTTCAAGTAAATCATTTGCAGTTTAAGAAGTTCGACTTTAAGTATATATTACTACTTCTTGGCTGTGTGAGTTTAGCAATAGTCATTCGTTAGAATAAGTCTTATTTTTTGTGTTCTAGTTGGTGATGCACTAAGGGTAATGCAGTTGTATATATTTTTCACTTAGAGGCAAGTTCGATGCTGGTGCTAGAAAAAGGGCAAAACCAGAAGTGTTTTTTTGTAGTCTGGCCATGAACTTATCTAGTGATGAACTGGTGATAGTCGGACATATATAAGATATCAGGTCTATTAGGAAAGGGAAGTTTTCCGTAGTTTAAGGGAACCACAAATAGGTAAAATAAACAGAAAGTAAGATAAGTTCCTAACAAATCAAGGAATGAAGGTAGTGATCATAACTTATTTTCATTTAGGGGAAGTGCTTAGTTTTTCATCAATTTATATAGCCTAATACCAATGCATCAAGCTGAAGGAAACCTTCAACTCAATTTCTTGATTGTTTGGTTGAAATTTCGGTACCACTTCAGAAATGAAGCAGCTGAAGGAACAACTGTTACTAGTCTAGTTCTGTGTTTTCAGAAAGGTGTGGCTGGCTACTGTTCTAAAGCGACTGCACCATTTTGCAAGTCTTCTGTATTTTGTTCTAACGCATCATCTAGCATGTTCGATGAAGACTACTGCACAAACATGTTTACTTCTTTAACATTATTAAAGTGGGGAAAATAGAGCATTTCAGTTGCAGGACCTCTTGTTTTTATTCAAGTACCTCAGTGGTGGCATTATGGTGAGACTGAGATCAATTAATGGCTGCTATTGGACAAGTGGATCAACCCTCTTCTTTTGTGTCCATGGATCAAATTTGTGTGATATGTTAAACGTACTGTAAATAAGAAATGGTCCTAATATTAAGTTTTTACCGGATGTCCCTGAAGGGACAGTCCCCAGATTAAGTTCATATCCTGTGATATGTAGAATCGCCTTGATCTGCAAACGTCAGTCTAGTTGTAGAGTACAAAATATTAAAGTTGGTAAATGCTGAATACTGAATTCCTGAGCTATATACCCTTGCATTTTCCGGATAATTGGGGAAATGTGCTGTGTGATGCATCGATTCCACTTGTTCTCTGTTTTTTTTCCCTTTGTTCTTGCACAGACATAGAAGCACATTGATGTTATGTATCTAGCTTATGACTTCCTTTTCGCTTCTGTTTGTGTCTCCTCTCATGTTACGCAGATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTGGTACATCAACAGAATCATTGTGTCCCTTATATGTAATTTTACTTTCGAAATGTCTCTCTTTTATAATTTAATGCATTAACAATGTGCTCTTTTATGTGTGTAAAGGTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAAAGTCTTAACAATATATGGAAATTTCTTTATAATTCACTTTCCAAAATCTTTGTTTACCAATCAGTACATTCCAATATCACAGGGTGAAATATAAAAGCCACAAGAAACAGGCCCAGAAACACCAAAAAAAAAAAATCTACTATGACATTTTTGCTACAGAAAGAATCAAGCAGTGTGCCTCTTCTTCTTCTTTGTCTTCAACCTATCACATAAGAAAGTTTTCTCTAATTGATCCACTCTCTGTGCCAGCGAATTCAGCATTCGTGTTTGTAGTTCATTTTTGTGGCACAGTTCAGTCATCATTCTCATCATATTCTCATTCTTCTCCACCATTTTCTCCAACAACTCTCGGTTTCTTCTACTCTCTTCTCCCCCTTCAAACTTGTGTGACCTTGTTTCATTCTCATTCTCATTCTCATTCACATCCTCAACTACTTCGATCAAATCCCCAACTTCACCTCTCTCCACACTTTCCTCCACACATTCGAGCATTGGACAGTCCGTTTCCTGCTTCACCTCCTGCAATCCTCCACGCTTCTCATTCAGCGGTGCTACATCGTGTTCACCCTCTATGGGTGTTTTCTCATCATTTGATGCTGCTTGAGTTTCTACATCCACACTCTGCTCTGACAGATGACAAAGTTCATTCTGATTTGTCAATTTTCCATCTTCATCCTGTTTTCCTGTTGAATTGGGGATGTCTCCGGTCTGATTGACTGGTTCAGAGAGTTCATCGGATTGATTCTCCTCTTCAGCTGCAATTTGATTTGCAGCAGCAACAATGCAGTCGACTTTCTCTTGCAAATAGATGGCCTTTCTAATCACAGCCTTTCTGCACTCCCTAACACCGGAATCAACTCCACGAATGGAGTCCAACTTGAAAAGCAGAGACATCAGCGTCTCATTCACCCGCAACCTTTCCCTTTCATCTCTACAAATCAACTCCGCCGTTTCTCTACACAAAAGCTTCCGCTCAACATCTTCCACCTCTTTTCGTATCAACTTGATTTTCTTCACGCTTTTTCTCACCAAAAAGCCTCTGAATACCTTCTGGATCTTCAACGCTGAACCGGACCTATCCGGCTCAGGTTTCTTTGTCGCCGAGGCCAAAACGGACCGCTCGGGATCCGAACTAACGAAATGGACCGGAATCTGAACAACCTTGGAGGCCTGCTTGATTCCGGCAGGTTTCTGGTGAATCGATTGCACTGGAATTCCTCTCATGTTTGAGGAATAGCCAGGGCGAGCTGACTGGGGCCAATAGCTTCCGTATAATGGATACTCCATTGTTAACTTTGATCGCTTTGTTGAGATATATATTGATCGCTAATGAAGTCTGAAGTTTTTGTTGTATATGCAATGAGAGAAGCTGTGAAGCTTTCTGGTATTTATGCGGTTGAGAAAGAAACTCAACTGAATTTTCCAGAAGGTTCAGGAATTTTTGGAAGGGCACAAAAATATCTTAGCTTTCGCTAGAGTGATGTAGAATGTTCTATCTCTCTATAATTCAATTAAAACATGTCTTTAACCAATTAATTAAATATAGAAAAATTTTAAAAATATTTTCCTTTCGTATCAAATACGCTCTTAATTAAAAAAATAATAATATTGAAACTCAATCACTTATTTTGCATTTTTTATGTTGAGTTCTATTTTTCAAACATATTATATTGGATCCTTATATACGAGAGCGGTGTGCATTATTTTGATTAAATTGAATTTTAATTTGGATTGAATTTTTGAATTCTTGAATTTATTTTGCATTTATAATTTACTTTGTTTGATTTTTTGATTTGGTCTCGATTTTTAGAAAAATAAAAATCGAAAAATTTAAAAAATCGAATTATATTATATAAATTATATATATACTGTACATATTAAATTGAAGTTAATCAATTTTGTCCCTTTTTAGTTATTTTTATTATAATTTAGTTTATTTTCTTATATTTGATCATCTATAATTGATATACTTTTAAGTATTGTGATTTACGTTTTACTTGTGATTTATATTTAAAAGTATATTTAAGAAAGTCAATTTATATATATATATATATATATATATATATATATAAATTTAAATTGTAAATAATTGTTATATTTCTTATTGACATAACCAATTAACCAAATCGAAAAAACTCAAACAAAAAAGAGAAAAAACAAAGCAAATCGAATTTATT</genome_strand>
        <mrna_strand>CTCTGTTTTTCAGCTCCTCG.......................................................................................ATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTG.........................................................................................................GTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACCCCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAAAGTCTTAACAATATATGGAAATTTCTTTATAATTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226260" ref_strand="+" ref_description="SGN-E226260 [cLEL-31-M13](-)">
      <seq>ggcacactgcttgattctttctgtagcaaaaatgtcatagtagattttttttttttggtgtttctgggcctgtatcttgtggcttttatatttcaccctgtgatactggaatgtactgattggtaaacaaagattttggaaagtgaattataaagaaatttccatatattgttaagaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15861" stop="15085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15561" g_stop="15385" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="178" polyA_stop="196"/>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E226260" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15561" e_stop="15385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCACACTGCTTGATTCTTTCTGTAGCAAAAATGTCATAGTAGATTTTTTTTTTTTGGTGTTTCTGGGCCTGTTTCTTGTGGCTTTTATATTTCACCCTGTGATATTGGAATGTACTGATTGGTAAACAAAGATTTTGGAAAGTGAATTATAAAGAAATTTCCATATATTGTTAAGA</genome_strand>
        <mrna_strand>GGCACACTGCTTGATTCTTTCTGTAGCAAAAATGTCATAGTAGATTTTTTTTTTTTGGTGTTTCTGGGCCTGTATCTTGTGGCTTTTATATTTCACCCTGTGATACTGGAATGTACTGATTGGTAAACAAAGATTTTGGAAAGTGAATTATAAAGAAATTTCCATATATTGTTAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371331" ref_strand="+" ref_description="SGN-E371331 [TUS-27-C5](-)">
      <seq>caggatgaagatggaaaattgccaaatcagaatgaactttgtcatctgtcagagcagagtgtggatgtagaaactcaagcagcatcaaatgatgagaaaacacccatagagggtgaacacgatgtagcaccgctgaatgagaagcgtggaggattgcaggaggtgaagcaggaaacggactgtccaatgctcgaatgtgtggaggaaagtgtggaaaaaggtgaagttggggatttgatcaaagtagttgaggatgtgaattagaatgagaatgagaattaaacaaggtcacacaagtttgaagggggagaaaagagtaaaagaaaccgagagttgttggagaaaatggtggaaaagaattagaatatgatgagaatgatgtctgaactgtgccacaaaaatgaactacaaacacgaatgctgaattcgctggcccagagagtggatcaattaaagaaaacttttttatgtgataggttgaagacaaagaagaagaaaaggcacactgcttgattctttctgtagcaaaaatgtcatagtagattttttttttggtgtttctgggcctgttttttgtggcttttatatttcaccctgtgatattggaatgtactgattggtaaacaaagattttggaaagtgaattataaagaaattttctatatattgttaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16360" stop="15085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16060" g_stop="15387" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="673" r_length="673" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="674" polyA_stop="696"/>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E371331" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16060" e_stop="15387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATGAAGATGGAAAATTGACAAATCAGAATGAACTTTGTCATCTGTCAGAGCAGAGTGTGGATGTAGAAACTCAAGCAGCATCAAATGATGAGAAAACACCCATAGAGGGTGAACACGATGTAGCACCGCTGAATGAGAAGCGTGGAGGATTGCAGGAGGTGAAGCAGGAAACGGACTGTCCAATGCTCGAATGTGTGGAGGAAAGTGTGGAGAGAGGTGAAGTTGGGGATTTGATCGAAGTAGTTGAGGATGTGAATGAGAATGAGAATGAGAATGAAACAAGGTCACACAAGTTTGAAGGGGGAGAAGAGAGTAGAAGAAACCGAGAGTTGTTGGAGAAAATGGTGGAGAAGAATGAGAATATGATGAGAATGATGACTGAACTGTGCCACAAAAATGAACTACAAACACGAATGCTGAATTCGCTGGCACAGAGAGTGGATCAATTAGAGAAAACTTTCTTATGTGATAGGTTGAAGACAAAGAAGAAGAAGAGGCACACTGCTTGATTCTTTCTGTAGCAAAAATGTCATAGTAGATTTTTTTTTTTTGGTGTTTCTGGGCCTGTTTCTTGTGGCTTTTATATTTCACCCTGTGATATTGGAATGTACTGATTGGTAAACAAAGATTTTGGAAAGTGAATTATAAAGAAA-TTTCCATATATTGTTAA</genome_strand>
        <mrna_strand>CAGGATGAAGATGGAAAATTGCCAAATCAGAATGAACTTTGTCATCTGTCAGAGCAGAGTGTGGATGTAGAAACTCAAGCAGCATCAAATGATGAGAAAACACCCATAGAGGGTGAACACGATGTAGCACCGCTGAATGAGAAGCGTGGAGGATTGCAGGAGGTGAAGCAGGAAACGGACTGTCCAATGCTCGAATGTGTGGAGGAAAGTGTGGAAAAAGGTGAAGTTGGGGATTTGATCAAAGTAGTTGAGGATGTGAATTAGAATGAGAATGAGAATTAAACAAGGTCACACAAGTTTGAAGGGGGAGAAAAGAGTAAAAGAAACCGAGAGTTGTTGGAGAAAATGGTGGAAAAGAATTAGAATATGATGAGAATGATGTCTGAACTGTGCCACAAAAATGAACTACAAACACGAATGCTGAATTCGCTGGCCCAGAGAGTGGATCAATTAAAGAAAACTTTTTTATGTGATAGGTTGAAGACAAAGAAGAAGAAAAGGCACACTGCTTGATTCTTTCTGTAGCAAAAATGTCATAGTAGA--TTTTTTTTTTGGTGTTTCTGGGCCTGTTTTTTGTGGCTTTTATATTTCACCCTGTGATATTGGAATGTACTGATTGGTAAACAAAGATTTTGGAAAGTGAATTATAAAGAAATTTTCTATATATTGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211366" ref_strand="+" ref_description="SGN-E211366 [cLEC-67-A13]">
      <seq>tggactccattcgtggagttgattccggtgttagggagtgcagaaaggctgtgattagaaaggccatctatttgcaagagaaagtcgactgcattgttgctgctgcaaatcaaattgcagctgaagaggagaatcaatccgatgaactctctgaaccagtcaatcagaccggagacatccccaattcaacaggaaaacaggatgaagatggaaaattgacaaatcagaatgaactttgtcatctgtcagagcagagtgtggatgtagaaactcaagcagcatcaaatgatgagaaaacacccatagagggtgaacacgatgtagcaccgctgaatgagaagcgtggaggattgcaggaggtgaagcaggaaacggactgtccaatgctcgaatgtgtggaggaaagtgtggagagaggtgaagttggggatttgatcgaagtagttgaggatgtgaatgagaatgagaatgagaatgaaacaaggtcacacaagtttgaagggggagaagagagtagaagaaaccgagagttgttggagaaaatggtggagaagaatgagaatatgatgagaatgatgactgaactgtgccacaaaaatgaactacnaacacgaatgctgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16557" stop="15335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16257" g_stop="15635" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E211366" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16257" e_stop="15635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAACCAGTCAATCAGACCGGAGACATCCCCAATTCAACAGGAAAACAGGATGAAGATGGAAAATTGACAAATCAGAATGAACTTTGTCATCTGTCAGAGCAGAGTGTGGATGTAGAAACTCAAGCAGCATCAAATGATGAGAAAACACCCATAGAGGGTGAACACGATGTAGCACCGCTGAATGAGAAGCGTGGAGGATTGCAGGAGGTGAAGCAGGAAACGGACTGTCCAATGCTCGAATGTGTGGAGGAAAGTGTGGAGAGAGGTGAAGTTGGGGATTTGATCGAAGTAGTTGAGGATGTGAATGAGAATGAGAATGAGAATGAAACAAGGTCACACAAGTTTGAAGGGGGAGAAGAGAGTAGAAGAAACCGAGAGTTGTTGGAGAAAATGGTGGAGAAGAATGAGAATATGATGAGAATGATGACTGAACTGTGCCACAAAAATGAACTACAAACACGAATGCTGAAT</genome_strand>
        <mrna_strand>TGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAACCAGTCAATCAGACCGGAGACATCCCCAATTCAACAGGAAAACAGGATGAAGATGGAAAATTGACAAATCAGAATGAACTTTGTCATCTGTCAGAGCAGAGTGTGGATGTAGAAACTCAAGCAGCATCAAATGATGAGAAAACACCCATAGAGGGTGAACACGATGTAGCACCGCTGAATGAGAAGCGTGGAGGATTGCAGGAGGTGAAGCAGGAAACGGACTGTCCAATGCTCGAATGTGTGGAGGAAAGTGTGGAGAGAGGTGAAGTTGGGGATTTGATCGAAGTAGTTGAGGATGTGAATGAGAATGAGAATGAGAATGAAACAAGGTCACACAAGTTTGAAGGGGGAGAAGAGAGTAGAAGAAACCGAGAGTTGTTGGAGAAAATGGTGGAGAAGAATGAGAATATGATGAGAATGATGACTGAACTGTGCCACAAAAATGAACTACNAACACGAATGCTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273408" ref_strand="+" ref_description="SGN-E273408 [cLEN-3-P22]">
      <seq>gacgctgatgtctctgcttttcaagttggactccattcgtggagttgattccggtgttagggagtgcataaaggctgtgattagaaaggccatctatttgcaagagaaagtcgactgcattgttgctgctgcaaatcaaattgcagctgaagaggagaatcaatccgatgaactctctgaaccagtcaatcataccggagacatccccaattcaacaggaaaacaggatgaagatggaaaattgacaaatcacaatgaactttgtcatctgtcagagcatagtgtggatgtagaaactcaagcagcatcaaatgatgagaaaacacccatagagggtgaacacgatgtagcaccgctgaatgagaagcgtgtatgattgcaggaggtgaagcaggaaacggactgtccaatgctctaatgtgtggaggaaagtgtggagagaggtgaagttggggatttgatcgaagtatattttgaggatgtgaatgagaatgataatgagaatgaaacaaggtcacacaagtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16583" stop="15460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16283" g_stop="15760" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E273408" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16283" e_stop="15760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAACCAGTCAATCAGACCGGAGACATCCCCAATTCAACAGGAAAACAGGATGAAGATGGAAAATTGACAAATCAGAATGAACTTTGTCATCTGTCAGAGCAGAGTGTGGATGTAGAAACTCAAGCAGCATCAAATGATGAGAAAACACCCATAGAGGGTGAACACGATGTAGCACCGCTGAATGAGAAGCGTGGAGGATTGCAGGAGGTGAAGCAGGAAACGGACTGTCCAATGCTCGAATGTGTGGAGGAAAGTGTGGAGAGAGGTGAAGTTGGGGATTTGATCGAAG--TA-GTTGAGGATGTGAATGAGAATGAGAATGAGAATGAAACAAGGTCACACAAGTTTG</genome_strand>
        <mrna_strand>GACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCATAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAACCAGTCAATCATACCGGAGACATCCCCAATTCAACAGGAAAACAGGATGAAGATGGAAAATTGACAAATCACAATGAACTTTGTCATCTGTCAGAGCATAGTGTGGATGTAGAAACTCAAGCAGCATCAAATGATGAGAAAACACCCATAGAGGGTGAACACGATGTAGCACCGCTGAATGAGAAGCGTGTATGATTGCAGGAGGTGAAGCAGGAAACGGACTGTCCAATGCTCTAATGTGTGGAGGAAAGTGTGGAGAGAGGTGAAGTTGGGGATTTGATCGAAGTATATTTTGAGGATGTGAATGAGAATGATAATGAGAATGAAACAAGGTCACACAAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371332" ref_strand="+" ref_description="SGN-E371332 [TUS-27-C5]">
      <seq>tggcctcggcgacaaagaaacctgagccggataggtccggttcagcgttgaagatccagaaggtattcagaggctttttggtgagaaaaagcgtgaagaaaatcaagttgatacgaaaagaggtggaagatgttgagcggaagcttttgtgtagagaaacggcggagttgatttgtagagatgaaagggaaaggttgcgggtgaatgagacgctgatgtctctgcttttcaagttggactccattcgtggagttgattccggtgttagggagtgcagaaaggctgtgattagaaaggccatctatttgcaagagaaagtcgactgcattgttgctgctgcaaatcaaattgcagctgaagaggagaatcaatccgatgaactctctgaaccagtcaatcagaccggagacatccccaattcaacaggaaaacaggatgaagatggaaaattgacaaatcagaatgaactttgtcatctgtcagagcagagtgtggatgtagaaactcaagcagcatcaaatgatgagaaaacacccatagagggtgaacacgatgtagcaccgctgaatgagaagcgtggaggattgcaggaggtgaagcaggaaacggactgtccaatgctcgaatgtgtggaggaaagtgtggagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16791" stop="15542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16491" g_stop="15842" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="650" r_length="650" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E371332" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16491" e_stop="15842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCTCGGCGACAAAGAAACCTGAGCCGGATAGGTCCGGTTCAGCGTTGAAGATCCAGAAGGTATTCAGAGGCTTTTTGGTGAGAAAAAGCGTGAAGAAAATCAAGTTGATACGAAAAGAGGTGGAAGATGTTGAGCGGAAGCTTTTGTGTAGAGAAACGGCGGAGTTGATTTGTAGAGATGAAAGGGAAAGGTTGCGGGTGAATGAGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAACCAGTCAATCAGACCGGAGACATCCCCAATTCAACAGGAAAACAGGATGAAGATGGAAAATTGACAAATCAGAATGAACTTTGTCATCTGTCAGAGCAGAGTGTGGATGTAGAAACTCAAGCAGCATCAAATGATGAGAAAACACCCATAGAGGGTGAACACGATGTAGCACCGCTGAATGAGAAGCGTGGAGGATTGCAGGAGGTGAAGCAGGAAACGGACTGTCCAATGCTCGAATGTGTGGAGGAAAGTGTGGAGAGA</genome_strand>
        <mrna_strand>TGGCCTCGGCGACAAAGAAACCTGAGCCGGATAGGTCCGGTTCAGCGTTGAAGATCCAGAAGGTATTCAGAGGCTTTTTGGTGAGAAAAAGCGTGAAGAAAATCAAGTTGATACGAAAAGAGGTGGAAGATGTTGAGCGGAAGCTTTTGTGTAGAGAAACGGCGGAGTTGATTTGTAGAGATGAAAGGGAAAGGTTGCGGGTGAATGAGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAACCAGTCAATCAGACCGGAGACATCCCCAATTCAACAGGAAAACAGGATGAAGATGGAAAATTGACAAATCAGAATGAACTTTGTCATCTGTCAGAGCAGAGTGTGGATGTAGAAACTCAAGCAGCATCAAATGATGAGAAAACACCCATAGAGGGTGAACACGATGTAGCACCGCTGAATGAGAAGCGTGGAGGATTGCAGGAGGTGAAGCAGGAAACGGACTGTCCAATGCTCGAATGTGTGGAGGAAAGTGTGGAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268985" ref_strand="+" ref_description="SGN-E268985 [cLEI-16-C8]">
      <seq>gttggcctcggcgacaaagaaacctgagccggataggtccggttcagcgttgaagatccagaaagtattcagaggctttttggtgagaaaaagcgtgaagaaaatcaagttgatacgaaaagaggtggaagatgttgagcggaagcttttgtgtagagaaacggcggagttgatttgtagagatgaaagggaaaggttgcgggtgaatgagacgctgatgtctctgcttttcaagttggactccattcgtggagttgattccggtgttagggagtgcagaaaggctgtgattagaaaggccatctatttgcaagagaaagtcgactgcattgttgctgctgcaaatcaaattgcagctgaagaggagaatcaatccgatgaactctctgaaccagtcaatcagaccggagacatccccaattcaacaggaaaacaggatgaagatggaaaattgacaaatcagaatgaactttgtcatctgtcagagcagagtgtggatgtagaaactcaagcagcatcaaatgatgagaaaacacccatagagggtgaacacgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16792" stop="15637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16493" g_stop="15937" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E268985" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16493" e_stop="15937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCCTCGGCGACAAAGAAACCTGAGCCGGATAGGTCCGGTTCAGCGTTGAAGATCCAGAAGGTATTCAGAGGCTTTTTGGTGAGAAAAAGCGTGAAGAAAATCAAGTTGATACGAAAAGAGGTGGAAGATGTTGAGCGGAAGCTTTTGTGTAGAGAAACGGCGGAGTTGATTTGTAGAGATGAAAGGGAAAGGTTGCGGGTGAATGAGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAACCAGTCAATCAGACCGGAGACATCCCCAATTCAACAGGAAAACAGGATGAAGATGGAAAATTGACAAATCAGAATGAACTTTGTCATCTGTCAGAGCAGAGTGTGGATGTAGAAACTCAAGCAGCATCAAATGATGAGAAAACACCCATAGAGGGTGAACACGATG</genome_strand>
        <mrna_strand>GTTGGCCTCGGCGACAAAGAAACCTGAGCCGGATAGGTCCGGTTCAGCGTTGAAGATCCAGAAAGTATTCAGAGGCTTTTTGGTGAGAAAAAGCGTGAAGAAAATCAAGTTGATACGAAAAGAGGTGGAAGATGTTGAGCGGAAGCTTTTGTGTAGAGAAACGGCGGAGTTGATTTGTAGAGATGAAAGGGAAAGGTTGCGGGTGAATGAGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAACCAGTCAATCAGACCGGAGACATCCCCAATTCAACAGGAAAACAGGATGAAGATGGAAAATTGACAAATCAGAATGAACTTTGTCATCTGTCAGAGCAGAGTGTGGATGTAGAAACTCAAGCAGCATCAAATGATGAGAAAACACCCATAGAGGGTGAACACGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257520" ref_strand="+" ref_description="SGN-E257520 [cLEG-45-I5]">
      <seq>cccagtcagctcgccctggctattcctcaaacatgagaggaattccagtgcaatcgattcaccagaaacctgccggaatcaagcaggcctccaaggttgttcagattccggtccatttcgttagttcggatcccgagcggtccgttttggcctcggcgacaaagaaacctgagccggataggtccggttcagcgttgaagatccagaaggtattcagaggctttttggtgagaaaaagcgtgaagaaaatcaagttgatacgaaaagaggtggaagatgttgagcggaagcttttgtgtagagaaacggcggagttgatttgtagagatgaaagggaaaggttgcgggtgaatgagacgctgatgtctctgcttttcaagttggactccattcgtggagttgattccggtgttagggagtgcagaaaggctgtgattagaaaggccatctatttgcaagagaaagtcgactgcattgttgctgctgcaaatcaaattgcagctgaagaggagaatcaatccgatgaactctctgaaccagtcaatcagaccggagacatccccaattcaacaggaaaacaggatgaagatggaaaattgacnaatcagaatgaactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16938" stop="15720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16638" g_stop="16020" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E257520" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16638" e_stop="16020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGTCAGCTCGCCCTGGCTATTCCTCAAACATGAGAGGAATTCCAGTGCAATCGATTCACCAGAAACCTGCCGGAATCAAGCAGGCCTCCAAGGTTGTTCAGATTCCGGTCCATTTCGTTAGTTCGGATCCCGAGCGGTCCGTTTTGGCCTCGGCGACAAAGAAACCTGAGCCGGATAGGTCCGGTTCAGCGTTGAAGATCCAGAAGGTATTCAGAGGCTTTTTGGTGAGAAAAAGCGTGAAGAAAATCAAGTTGATACGAAAAGAGGTGGAAGATGTTGAGCGGAAGCTTTTGTGTAGAGAAACGGCGGAGTTGATTTGTAGAGATGAAAGGGAAAGGTTGCGGGTGAATGAGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAACCAGTCAATCAGACCGGAGACATCCCCAATTCAACAGGAAAACAGGATGAAGATGGAAAATTGACAAATCAGAATGAACTTTG</genome_strand>
        <mrna_strand>CCCAGTCAGCTCGCCCTGGCTATTCCTCAAACATGAGAGGAATTCCAGTGCAATCGATTCACCAGAAACCTGCCGGAATCAAGCAGGCCTCCAAGGTTGTTCAGATTCCGGTCCATTTCGTTAGTTCGGATCCCGAGCGGTCCGTTTTGGCCTCGGCGACAAAGAAACCTGAGCCGGATAGGTCCGGTTCAGCGTTGAAGATCCAGAAGGTATTCAGAGGCTTTTTGGTGAGAAAAAGCGTGAAGAAAATCAAGTTGATACGAAAAGAGGTGGAAGATGTTGAGCGGAAGCTTTTGTGTAGAGAAACGGCGGAGTTGATTTGTAGAGATGAAAGGGAAAGGTTGCGGGTGAATGAGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAACCAGTCAATCAGACCGGAGACATCCCCAATTCAACAGGAAAACAGGATGAAGATGGAAAATTGACNAATCAGAATGAACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254739" ref_strand="+" ref_description="SGN-E254739 [cLEG-33-C1]">
      <seq>gccccagtcagctcgccctggctattcctcaaacatgagaggaattccagtgcaatcgattcaccagaaacctgccggaatcaagcaggcctccaaggttgttcagattccggtccatttcgttagttcggatcccgagcggtccgttttggcctcggcgacaaagaaacctgagccggataggtccggttcagcgttgaagatccagaaggtattcagaggctttttggtgagaaaaagcgtgaagaaaatcaagttgatacgaaaagaggtggaagatgttgagcggaagcttttgtgtatagaaacggcggagttgatttgtagagatgaaagggaaaggttgcgggtgaatgagacgctgatgtctctgcttttcaagttggactccattcgtggagttgattccggtgttagggagtgcagaaaggctgtgattagaaaggccatctatttgcaagagaaagtcgactgcattgttgctgctgcaaatcaaattgcagctgaagaggagaatcaatccgatgaactctctgaaccagtcaatcagaccggagaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16940" stop="15781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16640" g_stop="16081" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E254739" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16640" e_stop="16081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCCAGTCAGCTCGCCCTGGCTATTCCTCAAACATGAGAGGAATTCCAGTGCAATCGATTCACCAGAAACCTGCCGGAATCAAGCAGGCCTCCAAGGTTGTTCAGATTCCGGTCCATTTCGTTAGTTCGGATCCCGAGCGGTCCGTTTTGGCCTCGGCGACAAAGAAACCTGAGCCGGATAGGTCCGGTTCAGCGTTGAAGATCCAGAAGGTATTCAGAGGCTTTTTGGTGAGAAAAAGCGTGAAGAAAATCAAGTTGATACGAAAAGAGGTGGAAGATGTTGAGCGGAAGCTTTTGTGTAGAGAAACGGCGGAGTTGATTTGTAGAGATGAAAGGGAAAGGTTGCGGGTGAATGAGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAACCAGTCAATCAGACCGGAGACA</genome_strand>
        <mrna_strand>GCCCCAGTCAGCTCGCCCTGGCTATTCCTCAAACATGAGAGGAATTCCAGTGCAATCGATTCACCAGAAACCTGCCGGAATCAAGCAGGCCTCCAAGGTTGTTCAGATTCCGGTCCATTTCGTTAGTTCGGATCCCGAGCGGTCCGTTTTGGCCTCGGCGACAAAGAAACCTGAGCCGGATAGGTCCGGTTCAGCGTTGAAGATCCAGAAGGTATTCAGAGGCTTTTTGGTGAGAAAAAGCGTGAAGAAAATCAAGTTGATACGAAAAGAGGTGGAAGATGTTGAGCGGAAGCTTTTGTGTATAGAAACGGCGGAGTTGATTTGTAGAGATGAAAGGGAAAGGTTGCGGGTGAATGAGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAACCAGTCAATCAGACCGGAGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251923" ref_strand="+" ref_description="SGN-E251923 [cLEG-14-M7]">
      <seq>tcaaacatgagaggaattccagtgcaatcgattcaccagaaacctgccggaatcaagcaggcctccaaggttgttcagattccggtccatttcgttagttcggatcccgagcggtccgttttggcctcggcgacaaagaaacctgagccggataggtccggttcagcgttgaagatccagaaggtattcagaggctttttggtgagaaaaagcgtgaagaaaatcaagttgatacgaaaagaggtggaagatgttgagcggaagcttttgtgtagagaaacggcggagttgatttgtagagatgaaagggaaaggttgcgggtgaatgagacgctgatgtctctgcttttcaagttggactccattcgtggagttgattccggtgttagggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16912" stop="15919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16612" g_stop="16219" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E251923" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16612" e_stop="16219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATGAGAGGAATTCCAGTGCAATCGATTCACCAGAAACCTGCCGGAATCAAGCAGGCCTCCAAGGTTGTTCAGATTCCGGTCCATTTCGTTAGTTCGGATCCCGAGCGGTCCGTTTTGGCCTCGGCGACAAAGAAACCTGAGCCGGATAGGTCCGGTTCAGCGTTGAAGATCCAGAAGGTATTCAGAGGCTTTTTGGTGAGAAAAAGCGTGAAGAAAATCAAGTTGATACGAAAAGAGGTGGAAGATGTTGAGCGGAAGCTTTTGTGTAGAGAAACGGCGGAGTTGATTTGTAGAGATGAAAGGGAAAGGTTGCGGGTGAATGAGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGT</genome_strand>
        <mrna_strand>TCAAACATGAGAGGAATTCCAGTGCAATCGATTCACCAGAAACCTGCCGGAATCAAGCAGGCCTCCAAGGTTGTTCAGATTCCGGTCCATTTCGTTAGTTCGGATCCCGAGCGGTCCGTTTTGGCCTCGGCGACAAAGAAACCTGAGCCGGATAGGTCCGGTTCAGCGTTGAAGATCCAGAAGGTATTCAGAGGCTTTTTGGTGAGAAAAAGCGTGAAGAAAATCAAGTTGATACGAAAAGAGGTGGAAGATGTTGAGCGGAAGCTTTTGTGTAGAGAAACGGCGGAGTTGATTTGTAGAGATGAAAGGGAAAGGTTGCGGGTGAATGAGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359846" ref_strand="+" ref_description="SGN-E359846 [cLPP-9-I22]">
      <seq>tattcaaataccaaaaagagaaaaaaaatcaaaaaaaaaaaaaagaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcaggaactcgaaaaggccttgagtgaatcgacagcgaaatggaagattgtactaggtcaccatgccattagaagtgcangacatcacggtgacactcagaacttgtgggatcgttttcttcctattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18043" stop="19825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18343" g_stop="18654" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="470" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="578" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19399" i_length="290">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19400" g_stop="19525" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="704" r_length="126" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E359846" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18343" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19400" e_stop="19525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCAAATACCAAAAAGAGAAAAAAAATCAAAA-AAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAAGTAAGTTCAATGTAGACTTCATCAATATTTGTCTAAAAATCATTTATCGTACATTTTAATTTCAAATGATCTATTATTTTTTTTAATAGGAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGT-GGATCGTTTTCTTCCTATTCTT</genome_strand>
        <mrna_strand>TATTCAAATACCAAAAAGAGAAAAAAAATCAAAAAAAAAAAAAAGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG..................................................................................................................................................................................................................................................................................................GAACTCGAAAAGGCCTTGAGTGAATCGACAGCGAAATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCANGACATCACGGTGACACTCAGA-ACTTGTGGGATCGTTTTCTTCCTATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365045" ref_strand="+" ref_description="SGN-E365045 [cLPP-17-J20]">
      <seq>caaaaagagaaaaaaaatcaaaaaaaaaaaaaagaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18054" stop="19177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18354" g_stop="18654" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18877" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="441" r_length="139" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E365045" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18354" e_stop="18654"/>
          <exon e_start="18739" e_stop="18877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAGAGAAAAAAAATC-AAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTAC</genome_strand>
        <mrna_strand>CAAAAAGAGAAAAAAAATCAAAAAAAAAAAAAAGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360018" ref_strand="+" ref_description="SGN-E360018 [cLPP-9-B4]">
      <seq>aaaaagagaaaaaatatcaaaaaaaaaaaaaagaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaagagtaaatgatacaaattttgtagaatcatttactaacatataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18055" stop="19162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18355" g_stop="18654" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18862" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="425" r_length="124" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E360018" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18355" e_stop="18654"/>
          <exon e_start="18739" e_stop="18862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAGAAAAAAAATCAA-AAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACA</genome_strand>
        <mrna_strand>AAAAAGAGAAAAAATATCAAAAAAAAAAAAAAGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAAGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359594" ref_strand="+" ref_description="SGN-E359594 [cLPP-5-I24]">
      <seq>agaaaaaaaatcacaaaaaaaaaaaaagaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtaaccattgattttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaattactcggttattggtgactggggacgaacgggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagttaatgatacaaattttgtaaaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18059" stop="19193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18359" g_stop="18654" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18893" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="451" r_length="155" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E359594" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18359" e_stop="18654"/>
          <exon e_start="18739" e_stop="18893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAAAAAATCAAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAG</genome_strand>
        <mrna_strand>AGAAAAAAAATCACAAAAAAAAAAAAAGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAACCATTGATTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTACTCGGTTATTGGTGACTGGGGACGAACGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTTAATGATACAAATTTTGTAAAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362801" ref_strand="+" ref_description="SGN-E362801 [cLPP-2-E14]">
      <seq>aaaaaatcaaaaaaaaaaaaaagaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcatacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18065" stop="19595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18365" g_stop="18654" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="448" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="556" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19295" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="669" r_length="113" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E362801" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18365" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATCAAAAAAAAA-AAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATG</genome_strand>
        <mrna_strand>AAAAAATCAAAAAAAAAAAAAAGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361934" ref_strand="+" ref_description="SGN-E361934 [cLPP-11-K1]">
      <seq>aaaatcaaaaaaaaaaaaaaagaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18067" stop="19198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18365" g_stop="18654" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="447" r_length="157" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E361934" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18365" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATCAAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG</genome_strand>
        <mrna_strand>AAAATCAAAAAAAAAAAAAAAGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361634" ref_strand="+" ref_description="SGN-E361634 [cLPP-12-M17]">
      <seq>aaaaaatcaaaaaaaaaaaaaagaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18065" stop="19182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18365" g_stop="18654" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18882" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="435" r_length="144" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E361634" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18365" e_stop="18654"/>
          <exon e_start="18739" e_stop="18882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATCAAAAAAAAA-AAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAA</genome_strand>
        <mrna_strand>AAAAAATCAAAAAAAAAAAAAAGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362828" ref_strand="+" ref_description="SGN-E362828 [cLPP-2-B13]">
      <seq>aaaaatcaaaaaaaaaaaaaagaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18066" stop="19500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18366" g_stop="18654" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="447" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="555" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19200" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="573" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E362828" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18366" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATC-AAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCA</genome_strand>
        <mrna_strand>AAAAATCAAAAAAAAAAAAAAGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364158" ref_strand="+" ref_description="SGN-E364158 [cLPP-16-D15]">
      <seq>aaaaatcaaaaaaaaaaaaaggaggttgggactgaagtataacaattggtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggatattggtgactggggacgaaggggtacttataatcaatctcacgtacctcgccacatggaaagagtcggagagaacttagacattgattttgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18066" stop="19078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18366" g_stop="18654" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18778" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="330" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E364158" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18366" e_stop="18654"/>
          <exon e_start="18739" e_stop="18778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATC-AAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTAT</genome_strand>
        <mrna_strand>AAAAATCAAAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTGGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGATATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTACCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAACTTAGACATTGATTTTGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330137" ref_strand="+" ref_description="SGN-E330137 [cTOD-5-J5]">
      <seq>aaaatcaaaaaaaaaaaggaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaaaaattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcaccctactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataatggtttaacaggagtaaatgatacaaatttcgtagagtcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaacgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaagtcttttgtagttaacgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18067" stop="19540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18367" g_stop="18654" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="444" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="552" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19240" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="610" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E330137" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18367" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAAC</genome_strand>
        <mrna_strand>AAAATC-AAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAAGTCTTTTGTAGTTAACGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330138" ref_strand="+" ref_description="SGN-E330138 [cTOD-5-J7]">
      <seq>aaaatcaaaaaaaaaaagtatgttggttctgaagtataacaatttgtgcggctttgggaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaaaaattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcaccctactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggacagaagttagacattgattttgtattatcaacgggtgacaatttctatgataatggtttaacaggagtaaatgatacaaatttcgtagagtcatttactaacatatacacagcaaagagcttacaaaaacaatgggacagcgtattaagcaaccacgattacagaggaaacgtataagcacaactcagtccttaccttaagaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18067" stop="19366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18367" g_stop="18654" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="444" r_length="157" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19066" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="509" r_length="65" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E330138" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18367" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATT</genome_strand>
        <mrna_strand>AAAATC-AAAAAAAAAAAGTATGTTGGTTCTGAAGTATAACAATTTGTGCGGCTTTGGGAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGACAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGGACAGCG..........................................................................................................TATTAAGCAACCACGATTACAGAGGAAACGTATAAGCACAACTCAGTCCTTACCTTAAGAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363515" ref_strand="+" ref_description="SGN-E363515 [cLPP-4-P21]">
      <seq>aaatcaaaaaaaaaaaaaagaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18068" stop="19198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18368" g_stop="18654" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="445" r_length="157" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E363515" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18368" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATC-AAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG</genome_strand>
        <mrna_strand>AAATCAAAAAAAAAAAAAAGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364476" ref_strand="+" ref_description="SGN-E364476 [cLPP-18-A2]">
      <seq>aaatcaaaaaaaaaaaaaagaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18068" stop="19198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18368" g_stop="18654" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="445" r_length="157" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E364476" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18368" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATC-AAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG</genome_strand>
        <mrna_strand>AAATCAAAAAAAAAAAAAAGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363465" ref_strand="+" ref_description="SGN-E363465 [cLPP-4-B3]">
      <seq>tcaaaaaaaaaaaaaaaagaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18073" stop="19160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18368" g_stop="18654" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18860" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="409" r_length="122" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E363465" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18368" e_stop="18654"/>
          <exon e_start="18739" e_stop="18860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCAAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATA</genome_strand>
        <mrna_strand>TCAAAAAAAAAAAAAAAAGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361478" ref_strand="+" ref_description="SGN-E361478 [cLPP-6-C17]">
      <seq>aatcaaaaaaaaaaaaaagaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttcaaaaacaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18069" stop="19187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18369" g_stop="18654" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18887" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="435" r_length="148" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E361478" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18369" e_stop="18654"/>
          <exon e_start="18739" e_stop="18887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATC-AAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATG</genome_strand>
        <mrna_strand>AATCAAAAAAAAAAAAAAGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTT-CAAAAACAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364439" ref_strand="+" ref_description="SGN-E364439 [cLPP-20-L12]">
      <seq>tcaaaaaaaaaaaaaagaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactacgcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttacacattgattctgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggttcatcgtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18071" stop="19198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18371" g_stop="18654" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="442" r_length="157" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E364439" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18371" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TC-AAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG</genome_strand>
        <mrna_strand>TCAAAAAAAAAAAAAAGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTACGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTACACATTGATTCTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTTCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364406" ref_strand="+" ref_description="SGN-E364406 [cLPP-20-K22]">
      <seq>tcaaaaaaaaaaaaaagaggttgggactgacgtgttgccattggagctggtctctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgttttatcaacggggtgacaattttttatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagctttacaaaaacaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18071" stop="19187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18371" g_stop="18654" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18887" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="437" r_length="152" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E364406" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18371" e_stop="18654"/>
          <exon e_start="18739" e_stop="18887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TC-AAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAAC-GGGTGACAA-TTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGC-TTACAAAAACAATG</genome_strand>
        <mrna_strand>TCAAAAAAAAAAAAAAGAGGTTGGGACTGACGTGTTGCCATTGGAGCTGGTCTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTTTTATCAACGGGGTGACAATTTTTTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTTACAAAAACAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360212" ref_strand="+" ref_description="SGN-E360212 [cLPP-14-C12]">
      <seq>tcaaaataaaaaaaaagatgttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgttgctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtgaatgatacaaattttgtagaatcatttactaacatatacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18071" stop="19163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18371" g_stop="18654" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18863" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="410" r_length="125" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E360212" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18371" e_stop="18654"/>
          <exon e_start="18739" e_stop="18863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAA-AAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACAC</genome_strand>
        <mrna_strand>TCAAAATAAAAAAAAAGATGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTTGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTGAATGATACAAATTTTGTAGAATCATTTACTAACATATACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360191" ref_strand="+" ref_description="SGN-E360191 [cLPP-14-I23]">
      <seq>aaaaaaaaaaaaataggttgggactgaagtataacaatttgagctatctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18073" stop="19163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18373" g_stop="18654" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18863" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="408" r_length="125" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E360191" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18373" e_stop="18654"/>
          <exon e_start="18739" e_stop="18863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCT-TCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACAC</genome_strand>
        <mrna_strand>AAAAAAAAAAAAATAGGTTGGGACTGAAGTATAACAATTTGAGCTATCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361342" ref_strand="+" ref_description="SGN-E361342 [cLPP-6-G1]">
      <seq>aaaaaaaaagaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18077" stop="19186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18377" g_stop="18654" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18886" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="426" r_length="148" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E361342" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18377" e_stop="18654"/>
          <exon e_start="18739" e_stop="18886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAAT</genome_strand>
        <mrna_strand>AAAAAAAAAGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360331" ref_strand="+" ref_description="SGN-E360331 [cLPP-8-A18]">
      <seq>aaaaaagaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacgcattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttangaaaattgatagcagatggatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18080" stop="19383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18380" g_stop="18654" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="432" r_length="157" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19083" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="514" r_length="82" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E360331" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18380" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTG</genome_strand>
        <mrna_strand>AAAAAAGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGCATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTANGAAAATTGATAGCAGATGGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329445" ref_strand="+" ref_description="SGN-E329445 [cTOD-11-A2]">
      <seq>aaaaggaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaaaaattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcaccctactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataatggtttaacaggagtaaatgatacaaatttcgtagagtcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaacgtagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18081" stop="19337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18381" g_stop="18654" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="431" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19037" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="467" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E329445" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18381" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAG</genome_strand>
        <mrna_strand>AAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAACGTAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332363" ref_strand="+" ref_description="SGN-E332363 [cTOD-17-A7]">
      <seq>acgaggctgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaaaaattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcaccctactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataatggtttaacaggagtaaatgatacaaatttcgtagagtcatttactaacatatacacagcaaagagcttacaaaaacaatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18093" stop="19189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18390" g_stop="18654" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18889" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="416" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E332363" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18390" e_stop="18654"/>
          <exon e_start="18739" e_stop="18889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGT</genome_strand>
        <mrna_strand>ACGAGGCTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363010" ref_strand="+" ref_description="SGN-E363010 [cLPP-2-D9]">
      <seq>gggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcatacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18092" stop="19594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18392" g_stop="18654" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="420" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="528" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19294" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="640" r_length="112" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E363010" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18392" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACAT</genome_strand>
        <mrna_strand>GGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360268" ref_strand="+" ref_description="SGN-E360268 [cLPP-14-N2]">
      <seq>gggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattatgcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18092" stop="19545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18392" g_stop="18654" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="420" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="528" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19245" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="591" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E360268" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18392" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTA</genome_strand>
        <mrna_strand>GGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTATGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547725" ref_strand="+" ref_description="SGN-E547725 [TUS-71-M2]">
      <seq>ctgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcatacatggctagcgtagtaaaagaactcgaaaaggccttgagtgaatcgacagcgaaatggaagattgtactaggtcaccatgccattagaagtgcaggacatcacggtgacactcagatacttgtggatcgttttcttcctattcttaggaagtacgatgttgatttttacatgaacggacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18096" stop="19939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18396" g_stop="18654" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="416" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="524" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19310" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="652" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19311" i_stop="19399" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19400" g_stop="19528" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="781" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19529" i_stop="19605" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19606" g_stop="19639" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="782" r_stop="815" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E547725" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18396" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19310"/>
          <exon e_start="19400" e_stop="19528"/>
          <exon e_start="19606" e_stop="19639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAAGTAAGTTCAATGTAGACTTCATCAATATTTGTCTAAAAATCATTTATCGTACATTTTAATTTCAAATGATCTATTATTTTTTTTAATAGGAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGGGTAAACTTTTTTCTCTGTTTCATTCACATTCCTTTTGACTTGAAATGTGCTTATAACGTTATTGATTTGCCTTACAGAAGTACGATGTTGATTTTTACATGAACGGACATG</genome_strand>
        <mrna_strand>CTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAA.........................................................................................GAACTCGAAAAGGCCTTGAGTGAATCGACAGCGAAATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG.............................................................................AAGTACGATGTTGATTTTTACATGAACGGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363035" ref_strand="+" ref_description="SGN-E363035 [cLPP-2-L9]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcatacatggctagcgtagtaaaagaactcgaaaaggccctgagtgaatcgacagcgaaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18097" stop="19739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18397" g_stop="18654" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="523" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19310" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="651" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19311" i_stop="19399" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19400" g_stop="19439" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="691" r_length="40" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E363035" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18397" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19310"/>
          <exon e_start="19400" e_stop="19439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAAGTAAGTTCAATGTAGACTTCATCAATATTTGTCTAAAAATCATTTATCGTACATTTTAATTTCAAATGATCTATTATTTTTTTTAATAGGAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGA</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAA.........................................................................................GAACTCGAAAAGGCCCTGAGTGAATCGACAGCGAAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359841" ref_strand="+" ref_description="SGN-E359841 [cLPP-9-G24]">
      <seq>tgaagtataaccatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacatttggcgttggtgtgctccctagacatgcatacatggnctagcgtagtaaaagaactcgaaaagcccttgagtgaatcgacagcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18097" stop="19733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18397" g_stop="18654" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="523" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19310" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="653" r_length="130" r_score="0.945"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19311" i_stop="19399" i_length="89">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19400" g_stop="19434" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="688" r_length="35" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E359841" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18397" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19310"/>
          <exon e_start="19400" e_stop="19434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCG-TGGTGTGCTCCCTAGACATGCATACATGG-CTAGCGTAGTAAAAGTAAGTTCAATGTAGACTTCATCAATATTTGTCTAAAAATCATTTATCGTACATTTTAATTTCAAATGATCTATTATTTTTTTTAATAGGAACTCGAAAAGGCCTTGAGTGAATCGACAGCAAC</genome_strand>
        <mrna_strand>TGAAGTATAACCATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACATTTGGCGTTGGTGTGCTCCCTAGACATGCATACATGGNCTAGCGTAGTAAAA.........................................................................................GAACTCGAAAAGCCCTTGAGTGAATCGACAGCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363022" ref_strand="+" ref_description="SGN-E363022 [cLPP-2-H9]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcatacatggctagcgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18097" stop="19605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18397" g_stop="18654" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="523" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19304" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="645" r_length="122" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E363022" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18397" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTA</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364931" ref_strand="+" ref_description="SGN-E364931 [cLPP-17-K3]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcatacatggctagcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18097" stop="19603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18397" g_stop="18654" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="523" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19303" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="644" r_length="121" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E364931" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18397" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGT</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329263" ref_strand="+" ref_description="SGN-E329263 [cTOD-2-F8]">
      <seq>tgaagtattacaatttgtgcttctttctcaatttccttggttgtcgaatcctaatacagaaccatggctaaattttccaaaaattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaagcttaagaaatttaatcaccctactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataatggtttaacaggagtaaatgatacaaatttcgtagagtcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaacgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtcttttgtagttaacgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcacaactcctaaagatcacatctacgattggcgtggtgtgcttcctagacatgcatacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18097" stop="19594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18397" g_stop="18654" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="523" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19294" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="635" r_length="112" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E329263" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18397" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACAT</genome_strand>
        <mrna_strand>TGAAGTATTACAATTTGTGCTTCTTTCTCAATTTCCTTGGTTGTCGAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAAGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAAGATCACATCTACGATTGGCGTGGTGTGCTTCCTAGACATGCATACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362325" ref_strand="+" ref_description="SGN-E362325 [cLPP-10-L18]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18097" stop="19593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18397" g_stop="18654" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="523" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19293" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="634" r_length="111" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E362325" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18397" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACA</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331885" ref_strand="+" ref_description="SGN-E331885 [cTOD-7-J10]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaaaaattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcaccctactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataatggtttaacaggagtaaatgatacaaatttcgtagagtcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaacgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtcttttgtagttaacgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcacaactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18097" stop="19593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18397" g_stop="18654" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="523" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19293" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="634" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E331885" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18397" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACA</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361127" ref_strand="+" ref_description="SGN-E361127 [cLPP-13-F1]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaagatcacatctacgattggcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18097" stop="19568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18397" g_stop="18654" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="523" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19268" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="609" r_length="86" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E361127" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18397" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGT</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAAGATCACATCTACGATTGGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360410" ref_strand="+" ref_description="SGN-E360410 [cLPP-8-L22]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18097" stop="19558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18397" g_stop="18654" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="523" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19258" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="599" r_length="76" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E360410" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18397" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTA</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361154" ref_strand="+" ref_description="SGN-E361154 [cLPP-13-N9]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18097" stop="19558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18397" g_stop="18654" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="523" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19258" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="599" r_length="76" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E361154" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18397" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTA</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365084" ref_strand="+" ref_description="SGN-E365084 [cLPP-17-I13]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18097" stop="19558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18397" g_stop="18654" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="523" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19258" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="599" r_length="76" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E365084" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18397" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTA</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364478" ref_strand="+" ref_description="SGN-E364478 [cLPP-18-A20]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaagagaaatatttcactactcctaaggatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18097" stop="19553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18397" g_stop="18654" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="523" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19253" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="594" r_length="71" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E364478" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18397" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCAC</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAAGAGAAATATTTCACTACTCCTAAGGATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360196" ref_strand="+" ref_description="SGN-E360196 [cLPP-14-K21]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccactattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaagtctttcgtagttaatgcagaaattgctgaaatattcatgggggatacaactccatttgaggagaaatatttcactactcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18097" stop="19543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18397" g_stop="18654" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="523" r_length="108" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.94"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19243" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="584" r_length="61" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E360196" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18397" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCC</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACTATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAAGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGGGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362578" ref_strand="+" ref_description="SGN-E362578 [cLPP-1-B13]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18097" stop="19540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18397" g_stop="18654" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="523" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19240" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="581" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E362578" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18397" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAAC</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360424" ref_strand="+" ref_description="SGN-E360424 [cLPP-8-A13]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattatgcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18097" stop="19501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18397" g_stop="18654" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="523" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19201" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="542" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E360424" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18397" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCAT</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTATGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364332" ref_strand="+" ref_description="SGN-E364332 [cLPP-20-J20]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttangaaaattgatagcagatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18097" stop="19380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18397" g_stop="18654" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19080" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="494" r_length="79" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E364332" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18397" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGAT</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTANGAAAATTGATAGCAGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364345" ref_strand="+" ref_description="SGN-E364345 [cLPP-20-N20]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgttgaagcacaactcagtccttaccttangaaaattgatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18097" stop="19372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18397" g_stop="18654" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19072" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="486" r_length="71" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E364345" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18397" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGC</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTTGAAGCACAACTCAGTCCTTACCTTANGAAAATTGATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363237" ref_strand="+" ref_description="SGN-E363237 [cLPP-19-J18]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgattacggattaacaggagtaaatgatacaaattttgtgaaatcatttactaacatatacacagcaaaaagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgttgaagcacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18097" stop="19343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18397" g_stop="18654" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19043" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="457" r_length="42" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E363237" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18397" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAAC</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATTACGGATTAACAGGAGTAAATGATACAAATTTTGTGAAATCATTTACTAACATATACACAGCAAAAAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTTGAAGCACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362249" ref_strand="+" ref_description="SGN-E362249 [cLPP-10-G22]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18097" stop="19331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18397" g_stop="18654" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19031" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="445" r_length="30" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E362249" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18397" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACG</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360712" ref_strand="+" ref_description="SGN-E360712 [cLPP-7-N16]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18097" stop="19198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18397" g_stop="18654" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19015" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="429" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E360712" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18397" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCAC</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361404" ref_strand="+" ref_description="SGN-E361404 [cLPP-6-D17]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18097" stop="19198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18397" g_stop="18654" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E361404" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18397" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361476" ref_strand="+" ref_description="SGN-E361476 [cLPP-6-C13]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18097" stop="19198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18397" g_stop="18654" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E361476" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18397" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363432" ref_strand="+" ref_description="SGN-E363432 [cLPP-4-E20]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattntgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18097" stop="19186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18397" g_stop="18654" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18886" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="406" r_length="148" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E363432" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18397" e_stop="18654"/>
          <exon e_start="18739" e_stop="18886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAAT</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTNTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329175" ref_strand="+" ref_description="SGN-E329175 [cTOD-2-F3]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaaaaattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcaccctactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataatggtttaacaggagtaaatgatacaaatttcgtagagtcatttactaacatatacacagcaaagagcttacaaaaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18097" stop="19186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18397" g_stop="18654" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18886" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="406" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E329175" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18397" e_stop="18654"/>
          <exon e_start="18739" e_stop="18886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAAT</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361657" ref_strand="+" ref_description="SGN-E361657 [cLPP-12-G24]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttgctttgttgtcaaatcctaatacagaaccatggctaaattctccaataattccatggttgtgtgctttttggtagccattgtttttggtatctctagtgcaagtgcatctactacgcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttgttggctattggtgactggggacgaacgggtacttatcatcaatctcacgtagctcgccacatggaaagagtctgagagaagttagacattgattttgtattatcaacgggtgacaatttctatgattacggattaacaggaataaatgacacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18097" stop="19185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18397" g_stop="18654" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18885" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="405" r_length="147" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E361657" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18397" e_stop="18654"/>
          <exon e_start="18739" e_stop="18885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAA</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTGCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTCTCCAATAATTCCATGGTTGTGTGCTTTTTGGTAGCCATTGTTTTTGGTATCTCTAGTGCAAGTGCATCTACTACGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTGTTGGCTATTGGTGACTGGGGACGAACGGGTACTTATCATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCTGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATTACGGATTAACAGGAATAAATGACACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364192" ref_strand="+" ref_description="SGN-E364192 [cLPP-16-D2]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18097" stop="19177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18397" g_stop="18654" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18877" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="397" r_length="139" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E364192" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18397" e_stop="18654"/>
          <exon e_start="18739" e_stop="18877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTAC</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364380" ref_strand="+" ref_description="SGN-E364380 [cLPP-20-O13]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18097" stop="19169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18397" g_stop="18654" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18869" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="389" r_length="131" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E364380" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18397" e_stop="18654"/>
          <exon e_start="18739" e_stop="18869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAA</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365131" ref_strand="+" ref_description="SGN-E365131 [cLPP-17-I22]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18097" stop="19166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18397" g_stop="18654" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18866" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="386" r_length="128" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E365131" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18397" e_stop="18654"/>
          <exon e_start="18739" e_stop="18866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGC</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360604" ref_strand="+" ref_description="SGN-E360604 [cLPP-7-C4]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaagggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18097" stop="19165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18397" g_stop="18654" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18865" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="385" r_length="127" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E360604" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18397" e_stop="18654"/>
          <exon e_start="18739" e_stop="18865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAG</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAAGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365029" ref_strand="+" ref_description="SGN-E365029 [cLPP-17-F4]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaaatttgtagaatcatttactaacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18097" stop="19158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18397" g_stop="18654" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18858" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="378" r_length="120" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E365029" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18397" e_stop="18654"/>
          <exon e_start="18739" e_stop="18858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATA</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAAATTTGTAGAATCATTTACTAACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364133" ref_strand="+" ref_description="SGN-E364133 [cLPP-16-C16]">
      <seq>tgaagtataacagtttgtgtctatttctcaatttccttcgctgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactatgcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagcttgccacatggaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18097" stop="18961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18397" g_stop="18654" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18747" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="267" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E364133" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>267</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18397" e_stop="18654"/>
          <exon e_start="18739" e_stop="18747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGA</genome_strand>
        <mrna_strand>TGAAGTATAACAGTTTGTGTCTATTTCTCAATTTCCTTCGCTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTATGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTTGCCAC....................................................................................ATGGAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361291" ref_strand="+" ref_description="SGN-E361291 [cLPP-15-M13]">
      <seq>gaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctaaacattgcatacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18098" stop="19594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18398" g_stop="18654" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="414" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="522" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19294" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="635" r_length="113" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E361291" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18398" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACA-TGCATACAT</genome_strand>
        <mrna_strand>GAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAAACATTGCATACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331907" ref_strand="+" ref_description="SGN-E331907 [cTOD-16-E3]">
      <seq>aagtataacaatttgtgcttctttctcgatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaaaaattccatggttctgtgctttttggtagccattgtttttgttatctctactgcaagagcatctactatgcttaagaaatttaatcaccctactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacataactcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataatggtttaacaggagtaaatgatacaaatttcgtagagtcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaacgtataagcacaactcaatccttaccttaggaaaattgatagcagatggatatgtttaaggtcttttgtagttaacgcagaaattgctgaaatattcatgatggatacaactccatttgatgagaaatatttcacaactcctaaggatcacatctacgattggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18099" stop="19567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18399" g_stop="18654" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="413" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="521" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19267" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="606" r_length="85" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E331907" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18399" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCG</genome_strand>
        <mrna_strand>AAGTATAACAATTTGTGCTTCTTTCTCGATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTACTGCAAGAGCATCTACTATGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACATAACTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAACGTATAAGCACAACTCAATCCTTACCTTAGGAAAATTGATAGCAGATGGATATGTTTAAGGTCTTTTGTAGTTAACGCAG.........................................................................AAATTGCTGAAATATTCATGATGGATACAACTCCATTTGATGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332019" ref_strand="+" ref_description="SGN-E332019 [cTOD-16-F2]">
      <seq>aagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaaaaattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactatgcttaagaaatttaatcaccctactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataatggtttaacaggagtaaatgatacaaatttcgtagagtcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaacgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtcttttgtagttaacgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcacgactcctaaggatcacatctacgattggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18099" stop="19566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18399" g_stop="18654" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="413" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="521" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19266" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="605" r_length="84" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E332019" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18399" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGC</genome_strand>
        <mrna_strand>AAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTATGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACGACTCCTAAGGATCACATCTACGATTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360797" ref_strand="+" ref_description="SGN-E360797 [cLPP-7-B17]">
      <seq>aagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18099" stop="19182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18399" g_stop="18654" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18882" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="400" r_length="144" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E360797" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18399" e_stop="18654"/>
          <exon e_start="18739" e_stop="18882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAA</genome_strand>
        <mrna_strand>AAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361114" ref_strand="+" ref_description="SGN-E361114 [cLPP-13-O22]">
      <seq>aagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18099" stop="19134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18399" g_stop="18654" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="352" r_length="96" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E361114" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18399" e_stop="18654"/>
          <exon e_start="18739" e_stop="18834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAAT</genome_strand>
        <mrna_strand>AAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361507" ref_strand="+" ref_description="SGN-E361507 [cLPP-6-E2]">
      <seq>agtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18100" stop="19321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18400" g_stop="18654" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="412" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19021" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="432" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E361507" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18400" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTAC</genome_strand>
        <mrna_strand>AGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364947" ref_strand="+" ref_description="SGN-E364947 [cLPP-17-O9]">
      <seq>gtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaataccagaaccatggctaaattttccaataattccatggttctgtgcctttttggtagccattgtttttgttatctctagtgcaagtgccatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggaccaaggggtaccttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagaccattgattttgtattatcaacgggtgaccaatttctatgataaccggattaaccaggagtaaatgataccaaattttgtagaatcatttactaacatatacccagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18101" stop="19409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18401" g_stop="18654" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="420" r_length="162" r_score="0.904"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="528" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19196" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="542" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E364947" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18401" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATA-CAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTG-CTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTG-CATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTA-CTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGA-CATTGATTTTGTATTATCAACGGGTGA-CAATTTCTATGATAA-TGGTTTAA-CAGGAGTAAATGATA-CAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATA</genome_strand>
        <mrna_strand>GTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACCAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACCAAGGGGTACCTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACCATTGATTTTGTATTATCAACGGGTGACCAATTTCTATGATAACCGGATTAACCAGGAGTAAATGATACCAAATTTTGTAGAATCATTTACTAACATATACCCAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360058" ref_strand="+" ref_description="SGN-E360058 [cLPP-9-N20]">
      <seq>tataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18102" stop="19176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18402" g_stop="18654" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18876" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="391" r_length="138" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E360058" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18402" e_stop="18654"/>
          <exon e_start="18739" e_stop="18876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTA</genome_strand>
        <mrna_strand>TATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364463" ref_strand="+" ref_description="SGN-E364463 [cLPP-18-E19]">
      <seq>ataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgcttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18103" stop="19176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18403" g_stop="18654" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18876" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="390" r_length="138" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E364463" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18403" e_stop="18654"/>
          <exon e_start="18739" e_stop="18876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTA</genome_strand>
        <mrna_strand>ATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGCTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361523" ref_strand="+" ref_description="SGN-E361523 [cLPP-6-I22]">
      <seq>aacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18105" stop="19345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18405" g_stop="18654" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="407" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19045" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="451" r_length="44" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E361523" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18405" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTC</genome_strand>
        <mrna_strand>AACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363130" ref_strand="+" ref_description="SGN-E363130 [cLPP-19-I16]">
      <seq>aacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactatgcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgttaaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18105" stop="19195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18405" g_stop="18654" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="407" r_length="157" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E363130" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18405" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG</genome_strand>
        <mrna_strand>AACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTATGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTTAAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362875" ref_strand="+" ref_description="SGN-E362875 [cLPP-2-F4]">
      <seq>caatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18107" stop="19593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18407" g_stop="18654" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="405" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="513" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19293" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="624" r_length="111" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E362875" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18407" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACA</genome_strand>
        <mrna_strand>CAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362378" ref_strand="+" ref_description="SGN-E362378 [cLPP-10-P15]">
      <seq>caatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagctttcaaaaacaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18107" stop="19188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18407" g_stop="18654" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18888" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="398" r_length="150" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E362378" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18407" e_stop="18654"/>
          <exon e_start="18739" e_stop="18888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGG</genome_strand>
        <mrna_strand>CAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTTCAAAAACAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361942" ref_strand="+" ref_description="SGN-E361942 [cLPP-11-M3]">
      <seq>aatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18108" stop="19371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18408" g_stop="18654" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="404" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19071" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="474" r_length="70" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E361942" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18408" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAG</genome_strand>
        <mrna_strand>AATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360637" ref_strand="+" ref_description="SGN-E360637 [cLPP-7-O8]">
      <seq>aatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18108" stop="19186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18408" g_stop="18654" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18886" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="395" r_length="148" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E360637" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18408" e_stop="18654"/>
          <exon e_start="18739" e_stop="18886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAAT</genome_strand>
        <mrna_strand>AATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362027" ref_strand="+" ref_description="SGN-E362027 [cLPP-11-F8]">
      <seq>atttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaagggtacttataatcaatcttacgtagctcgccacattggaagagtctgagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacttgagtggatgatacaaattgtttggaatcatttactaacatatacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18109" stop="19163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18409" g_stop="18654" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18863" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="371" r_length="125" r_score="0.888"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E362027" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18409" e_stop="18654"/>
          <exon e_start="18739" e_stop="18863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACAC</genome_strand>
        <mrna_strand>ATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAAGGGTACTTATAATCAATCTTACGTAGCTCGCCAC....................................................................................ATTGGAAGAGTCTGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACTTGAGTGGATGATACAAATTGTTTGGAATCATTTACTAACATATACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363778" ref_strand="+" ref_description="SGN-E363778 [cLPP-3-O16]">
      <seq>tttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcatacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18110" stop="19594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18410" g_stop="18654" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="402" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="510" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19294" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="622" r_length="112" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E363778" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18410" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACAT</genome_strand>
        <mrna_strand>TTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359822" ref_strand="+" ref_description="SGN-E359822 [cLPP-9-O13]">
      <seq>tgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18112" stop="19198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18412" g_stop="18654" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="400" r_length="157" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E359822" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18412" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG</genome_strand>
        <mrna_strand>TGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374229" ref_strand="+" ref_description="SGN-E374229 [TUS-33-L21]">
      <seq>gtgcttttttctcaatttcctttgttgtcaaatactaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtaaccattgctattgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttataggcgactggggacgaatgggtacttataatcaatctcacgtagctcgccacatggaaagagtctagacagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaagcaaccacgattacagaggaaatgtacaagcacaactcattccttaccttacgaaaattgatagcagatggatttgtttaaggtctctcgtagttaatgcagacattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggagcgctccctatacatgcatacatggctagcgtagtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18113" stop="19609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18413" g_stop="18654" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="400" r_length="158" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="508" r_length="108" r_score="0.926"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.94"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19309" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="635" r_length="127" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E374229" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18413" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTC-GGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAA</genome_strand>
        <mrna_strand>GTGCTTTTTTCTCAATTTCCTTTGTTGTCAAATACTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAACCATTGCTATTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATAGGCGACTGGGGACGAATGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCTAGACAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAAGCAACCACGATTACAGAGGAAATGTACAAGCACAACTCATTCCTTACCTTACGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTCTCGTAGTTAATGCAG.........................................................................ACATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGAGCGCTCCCTATACATGCATACATGGCTAGCGTAGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373630" ref_strand="+" ref_description="SGN-E373630 [TUS-33-K12]">
      <seq>tgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcatacatggctagcgtagtaaaagaactcgaaaaggccttgagtgaatcgacagcgaaatggaagattgtactaggtcaccatgccattagaagtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18114" stop="19774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18414" g_stop="18654" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="398" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="506" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19310" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="634" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19311" i_stop="19399" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19400" g_stop="19474" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="709" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E373630" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18414" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19310"/>
          <exon e_start="19400" e_stop="19474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAAGTAAGTTCAATGTAGACTTCATCAATATTTGTCTAAAAATCATTTATCGTACATTTTAATTTCAAATGATCTATTATTTTTTTTAATAGGAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCA</genome_strand>
        <mrna_strand>TGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAA.........................................................................................GAACTCGAAAAGGCCTTGAGTGAATCGACAGCGAAATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364506" ref_strand="+" ref_description="SGN-E364506 [cLPP-18-O8]">
      <seq>tgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcatacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18114" stop="19595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18414" g_stop="18654" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="398" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="506" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19295" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="619" r_length="113" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E364506" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18414" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATG</genome_strand>
        <mrna_strand>TGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362867" ref_strand="+" ref_description="SGN-E362867 [cLPP-2-B22]">
      <seq>tgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18114" stop="19593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18414" g_stop="18654" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="398" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="506" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19293" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="617" r_length="111" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E362867" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18414" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACA</genome_strand>
        <mrna_strand>TGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359769" ref_strand="+" ref_description="SGN-E359769 [cLPP-5-J6]">
      <seq>ctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgcttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18119" stop="19096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18419" g_stop="18654" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18796" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="294" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E359769" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18419" e_stop="18654"/>
          <exon e_start="18739" e_stop="18796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATT</genome_strand>
        <mrna_strand>CTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGCTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363954" ref_strand="+" ref_description="SGN-E363954 [cLPP-16-O11]">
      <seq>tttctcaatttcctttgggggcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattaggatttgaatctctagtgcaagtgcatctactaggcttaagaaatttgatcacccagctaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18120" stop="19129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18420" g_stop="18654" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18829" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="326" r_length="91" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E363954" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18420" e_stop="18654"/>
          <exon e_start="18739" e_stop="18829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATT-GTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATA</genome_strand>
        <mrna_strand>TTTCTCAATTTCCTTTGGGGGCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTAGGATTTG-AATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTGATCACCCAGCTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361006" ref_strand="+" ref_description="SGN-E361006 [cLPP-13-F4]">
      <seq>tcgatgacaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaangatcacatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18136" stop="19558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18434" g_stop="18654" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="378" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="486" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19258" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="562" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E361006" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18434" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTA</genome_strand>
        <mrna_strand>TCGATGACAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAANGATCACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364555" ref_strand="+" ref_description="SGN-E364555 [cLPP-18-B10]">
      <seq>ttatctctagtgcaagtgcatctactaggcttaagaaatggaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattgtgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattatgcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttatgaaaattgatagcagatggatttgtttaaagtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18218" stop="19543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18518" g_stop="18654" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="294" r_length="157" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="402" r_length="108" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.94"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19243" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="463" r_length="61" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E364555" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18518" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCC</genome_strand>
        <mrna_strand>TTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATGGAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTGTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTATGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTATGAAAATTGATAGCAGATGGATTTGTTTAAAGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361623" ref_strand="+" ref_description="SGN-E361623 [cLPP-12-I13]">
      <seq>tttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18256" stop="19371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18556" g_stop="18654" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="256" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19071" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="326" r_length="70" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E361623" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18556" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAG</genome_strand>
        <mrna_strand>TTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361810" ref_strand="+" ref_description="SGN-E361810 [cLPP-12-G10]">
      <seq>ggacgaagggtttcttataatcaatctcacgtagctcggcacatggaaagagtcggagagaacttagacattgattttgcattatcaacgggtgacaatttgtatgataactgattaacacgagtaaatgatacaaattttgtagaatcatttactaacatatacacagcacagagcttacaaaaacaatggtacagcgtattaggcaaccacgatttcagatgaaatgtagaagcacaactgagtccttaccttacgaaaattgatagcagatggattagtgtaaagtctctcgtagataatgcagaaattgctgaaatattcatggtggatacaactccatctgaggagaaatatttcactactcctaatgatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18313" stop="19554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18613" g_stop="18654" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="0.93"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="199" r_length="157" r_score="0.936"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="307" r_length="108" r_score="0.889"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.86"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19254" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="379" r_length="72" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E361810" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18613" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACA</genome_strand>
        <mrna_strand>GGACGAAGGGTTTCTTATAATCAATCTCACGTAGCTCGGCAC....................................................................................ATGGAAAGAGTCGGAGAGAACTTAGACATTGATTTTGCATTATCAACGGGTGACAATTTGTATGATAACTGATTAACACGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCACAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTTCAGATGAAATGTAGAAGCACAACTGAGTCCTTACCTTACGAAAATTGATAGCAGATGGATTAGTGTAAAGTCTCTCGTAGATAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATCTGAGGAGAAATATTTCACTACTCCTAATGATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365077" ref_strand="+" ref_description="SGN-E365077 [cLPP-17-E17]">
      <seq>tcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcatacatggctagcgtagtaaaagaactcgaaaaggccttgagtgaatcgacagcgaaatggaagattgtactaggtcaccatgccattagaagtgcaggacatcacggtgacactcagatacttgtggatcgttttcttcctattcttaggaagtacgatgttgatttttacatgaacggacatgaccactgtcttgaacatattagcgacactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18333" stop="19969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18633" g_stop="18654" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="179" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="287" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19310" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="415" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19311" i_stop="19399" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19400" g_stop="19528" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="544" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19529" i_stop="19605" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19606" g_stop="19669" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="608" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E365077" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18633" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19310"/>
          <exon e_start="19400" e_stop="19528"/>
          <exon e_start="19606" e_stop="19669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAAGTAAGTTCAATGTAGACTTCATCAATATTTGTCTAAAAATCATTTATCGTACATTTTAATTTCAAATGATCTATTATTTTTTTTAATAGGAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGGGTAAACTTTTTTCTCTGTTTCATTCACATTCCTTTTGACTTGAAATGTGCTTATAACGTTATTGATTTGCCTTACAGAAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTG</genome_strand>
        <mrna_strand>TCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAA.........................................................................................GAACTCGAAAAGGCCTTGAGTGAATCGACAGCGAAATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG.............................................................................AAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363948" ref_strand="+" ref_description="SGN-E363948 [cLPP-16-K15]">
      <seq>atctcacggagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcatacatggctagcgtagtaaaagaactcgaaaaggccttgagtgaatcgacagcgaaatggaagattgtactaggtcaccatgccattagaagtgcaggacatcacggtgacactcagatacttgtggatcgttttcttcctattcttaggaagtacgatgttgatttttacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18436" stop="19929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18636" g_stop="18654" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="176" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="284" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19310" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="412" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19311" i_stop="19399" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19400" g_stop="19528" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="541" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19529" i_stop="19605" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19606" g_stop="19629" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="565" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E363948" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18636" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19310"/>
          <exon e_start="19400" e_stop="19528"/>
          <exon e_start="19606" e_stop="19629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAAGTAAGTTCAATGTAGACTTCATCAATATTTGTCTAAAAATCATTTATCGTACATTTTAATTTCAAATGATCTATTATTTTTTTTAATAGGAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGGGTAAACTTTTTTCTCTGTTTCATTCACATTCCTTTTGACTTGAAATGTGCTTATAACGTTATTGATTTGCCTTACAGAAGTACGATGTTGATTTTTACATG</genome_strand>
        <mrna_strand>ATCTCACGGAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAA.........................................................................................GAACTCGAAAAGGCCTTGAGTGAATCGACAGCGAAATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG.............................................................................AAGTACGATGTTGATTTTTACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362320" ref_strand="+" ref_description="SGN-E362320 [cLPP-10-J18]">
      <seq>catggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcatacatggctagcgtagtaaaagaactcgaaaaggccttgagtgaatcgacagcgaaatggaagattgtactaggtcaccatgccattagaagtgcaggacatcacggtgacactcagatacttgtggatcgttttcttcctattcttaggaagtacgatgttgatttttacatgaacggacatgaccactgtcttgaacatattagcgacactgaaagcccgttgcaatttttagtaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18439" stop="20076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18654" g_stop="18654" g_length="1"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1" r_length="1" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="158" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19109" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="266" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19183" g_stop="19310" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="394" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19311" i_stop="19399" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19400" g_stop="19528" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="523" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19529" i_stop="19605" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19606" g_stop="19673" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="591" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19674" i_stop="19754" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19755" g_stop="19776" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="613" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E362320" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18654" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19109"/>
          <exon e_start="19183" e_stop="19310"/>
          <exon e_start="19400" e_stop="19528"/>
          <exon e_start="19606" e_stop="19673"/>
          <exon e_start="19755" e_stop="19776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAAGTAAGTTCAATGTAGACTTCATCAATATTTGTCTAAAAATCATTTATCGTACATTTTAATTTCAAATGATCTATTATTTTTTTTAATAGGAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGGGTAAACTTTTTTCTCTGTTTCATTCACATTCCTTTTGACTTGAAATGTGCTTATAACGTTATTGATTTGCCTTACAGAAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAGGTGAAACTAGACTTCAAAATGTTGCAAAATGACTTTAATTTTAGCAAACATGATGTTGATTTTTGTGTTTGATGTTTGTAGCCCGTTGCAATTTTTAGTAAGT</genome_strand>
        <mrna_strand>C....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAA.........................................................................................GAACTCGAAAAGGCCTTGAGTGAATCGACAGCGAAATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG.............................................................................AAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAG.................................................................................CCCGTTGCAATTTTTAGTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365221" ref_strand="+" ref_description="SGN-E365221 [cLPP-17-P12]">
      <seq>catggaaagagtcagagagaagtgggacattgattccgtattatcaacgggtgacaatttctatgataacgggtcaacaggagtaaatgatacaaatggtgtagaatcatttactaacatatacacagcatagagcttacaaaaacaatggtacagcgtattatgcaaccacgattacagatgaaatgtacaatcacaactcagtccttaccttatgaaaattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18439" stop="19369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18654" g_stop="18654" g_length="1"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1" r_length="1" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18739" g_stop="18895" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="158" r_length="157" r_score="0.917"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19002" g_stop="19069" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="226" r_length="68" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E365221" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18654" e_stop="18654"/>
          <exon e_start="18739" e_stop="18895"/>
          <exon e_start="19002" e_stop="19069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGAT</genome_strand>
        <mrna_strand>C....................................................................................ATGGAAAGAGTCAGAGAGAAGTGGGACATTGATTCCGTATTATCAACGGGTGACAATTTCTATGATAACGGGTCAACAGGAGTAAATGATACAAATGGTGTAGAATCATTTACTAACATATACACAGCATAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTATGCAACCACGATTACAGATGAAATGTACAATCACAACTCAGTCCTTACCTTATGAAAATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547724" ref_strand="+" ref_description="SGN-E547724 [TUS-71-M2](-)">
      <seq>agaggaaatgtagaagcacaactcagtcctacccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcatacatggctagcgtagtaaaagaactcgaaaaggccttgagtgaatcgacagcgaaatggaagattgtactaggtcaccatgccattagaagtgcaggacatcacggtgacactcagatacttgtggatcgttttcttcctattcttaggaagtacgatgttgatttttacatgaacggacatgaccactgtcttgaacatattagcgacactgaaagcccgttgcaatttttagtaagtggagcaggttcaaaggcatggagaggagatattaaaggaataaatagagatggtgtgcattttttccatgatggacaaggtttcatgtctgttgagttgacaccaacagaggctgagatcaaatattatgatgtttttggtagaattagacataggtggaataggtccaagaatcttcttcactctgctatgtaaaaaaaagattcttttttggttgtagatactaagttagatgtagaaaagaaattggattctttgtttttgttgttgttgttgagattggattgtgaaaggaagtaatctcacacatttagggttaatgtattagaatttagatggaataacatatgacagttttgctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18722" stop="20450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19022" g_stop="19109" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19183" g_stop="19310" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="216" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19311" i_stop="19399" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19400" g_stop="19528" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="345" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19529" i_stop="19605" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19606" g_stop="19673" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="413" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19674" i_stop="19754" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19755" g_stop="20159" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="807" r_length="394" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E547724" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19022" e_stop="19109"/>
          <exon e_start="19183" e_stop="19310"/>
          <exon e_start="19400" e_stop="19528"/>
          <exon e_start="19606" e_stop="19673"/>
          <exon e_start="19755" e_stop="20159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAAGTAAGTTCAATGTAGACTTCATCAATATTTGTCTAAAAATCATTTATCGTACATTTTAATTTCAAATGATCTATTATTTTTTTTAATAGGAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGGGTAAACTTTTTTCTCTGTTTCATTCACATTCCTTTTGACTTGAAATGTGCTTATAACGTTATTGATTTGCCTTACAGAAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAGGTGAAACTAGACTTCAAAATGTTGCAAAATGACTTTAATTTTAGCAAACATGATGTTGATTTTTGTGTTTGATGTTTGTAGCCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTG---TT-TT-TTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTCGTTTGGGTTCAATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTCATGTTTGATT</genome_strand>
        <mrna_strand>AGAGGAAATGTAGAAGCACAACTCAGTCCTACCCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAA.........................................................................................GAACTCGAAAAGGCCTTGAGTGAATCGACAGCGAAATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG.............................................................................AAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAG.................................................................................CCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGGTGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCAACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAATAGGTCCAAGAATCTTCTTCACTCTGCTATGT----AAAAAAAAGATTCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTGTTGTTGTTGTTGAGATTGGATTGTGAAAGGAAGT-AATCTCACACATTTA----------GGGTT-AATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549560" ref_strand="+" ref_description="SGN-E549560 [TUS-71-I18](-)">
      <seq>aaaattgatagcagatggattttttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcatacatggctagcgtagtaaaagaactcgaaaaggccttgagtgaatcgacagcgaaatggaagattgtactaggtcaccatgccattagaagtgcaggacatcacggtgacactcagatacttgtggatcgttttcttcctattcttaggaagtacgatgttgatttttacatgaacggacatgaccactgtcttgaacatattagcgacactgaaagcccgttgcaatttttagtaagtggagcaggttcaaaggcatggagaggagatattaaaggaataaatagagatggtgtgcattttttccatgatggacaaggtttcatgtctgttgagttgacaccaacagaggctgagatcaaatattatgatgtttttggtagaattagacataggtggaataggtccaagaatcttcttcactctgctatgtaaaaaaaagattcttttttggttgtagatactaagttagatgtagaaaagaaattggattctttgtttttgttgttgttgttgagattggattgtgaaaggaagtaatctcacacatttagggttaatgtattagaatttagatggaataacatatgacagttttgctcaaaaaaaaaaaaaaagaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18761" stop="20450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19061" g_stop="19109" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73">
            <donor d_prob="0.977" d_score="0.94"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19183" g_stop="19310" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="176" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19311" i_stop="19399" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19400" g_stop="19528" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="305" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19529" i_stop="19605" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19606" g_stop="19673" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="373" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19674" i_stop="19754" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19755" g_stop="20095" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="714" r_length="341" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="758" polyA_stop="779"/>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E549560" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19061" e_stop="19109"/>
          <exon e_start="19183" e_stop="19310"/>
          <exon e_start="19400" e_stop="19528"/>
          <exon e_start="19606" e_stop="19673"/>
          <exon e_start="19755" e_stop="20095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAAGTAAGTTCAATGTAGACTTCATCAATATTTGTCTAAAAATCATTTATCGTACATTTTAATTTCAAATGATCTATTATTTTTTTTAATAGGAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGGGTAAACTTTTTTCTCTGTTTCATTCACATTCCTTTTGACTTGAAATGTGCTTATAACGTTATTGATTTGCCTTACAGAAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAGGTGAAACTAGACTTCAAAATGTTGCAAAATGACTTTAATTTTAGCAAACATGATGTTGATTTTTGTGTTTGATGTTTGTAGCCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTG---TT-TT-TTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTC</genome_strand>
        <mrna_strand>AAAATTGATAGCAGATGGATTT-TTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAA.........................................................................................GAACTCGAAAAGGCCTTGAGTGAATCGACAGCGAAATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG.............................................................................AAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAG.................................................................................CCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGGTGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCAACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAATAGGTCCAAGAATCTTCTTCACTCTGCTATGT----AAAAAAAAGATTCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTGTTGTTGTTGTTGAGATTGGATTGTGAAAGGAAGT-AATCTCACACATTTAGGGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373629" ref_strand="+" ref_description="SGN-E373629 [TUS-33-K12](-)">
      <seq>catttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcatacatggctagcgtagtaaaagaactcgaaaaggccttgagtgaatcgacagcgaaatggaagattgtactaggtcaccatgccattagaagtgcaggacatcacggtgacactcagatacttgtggatcgttttcttcctattcttaggaagtacgatgttgatttttacatgaacggacatgaccactgtcttgaacatattagcgacactgaaagcccgttgcaatttttagtaagtggagcaggttcaaaggcatggagaggagatattaaaggaataaatagagatggtgtgcattttttccatgatggacaaggtttcatgtctgttgagttgacaccaacagaggctgagatcaaatattatgatgtttttggtagaattagacataggtggaataggtccaagaatcttcttcactctgctatgtaaaaaaaagattcttttttggttgtagatactaagttagatgtagaaaagaaattggattctttgtttttgttgttgttgttgagattggattgtgaaaggaagtaatctcacacatttagggttaatgtattagaatttagatggaataacatatgacagttttgctcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18916" stop="20450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19216" g_stop="19310" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19311" i_stop="19399" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19400" g_stop="19528" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="224" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19529" i_stop="19605" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19606" g_stop="19673" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="292" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19674" i_stop="19754" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19755" g_stop="20095" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="633" r_length="341" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="677" polyA_stop="688"/>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E373629" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19216" e_stop="19310"/>
          <exon e_start="19400" e_stop="19528"/>
          <exon e_start="19606" e_stop="19673"/>
          <exon e_start="19755" e_stop="20095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAAGTAAGTTCAATGTAGACTTCATCAATATTTGTCTAAAAATCATTTATCGTACATTTTAATTTCAAATGATCTATTATTTTTTTTAATAGGAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGGGTAAACTTTTTTCTCTGTTTCATTCACATTCCTTTTGACTTGAAATGTGCTTATAACGTTATTGATTTGCCTTACAGAAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAGGTGAAACTAGACTTCAAAATGTTGCAAAATGACTTTAATTTTAGCAAACATGATGTTGATTTTTGTGTTTGATGTTTGTAGCCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTG---TT-TT-TTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTC</genome_strand>
        <mrna_strand>CATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAA.........................................................................................GAACTCGAAAAGGCCTTGAGTGAATCGACAGCGAAATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG.............................................................................AAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAG.................................................................................CCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGGTGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCAACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAATAGGTCCAAGAATCTTCTTCACTCTGCTATGT----AAAAAAAAGATTCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTGTTGTTGTTGTTGAGATTGGATTGTGAAAGGAAGT-AATCTCACACATTTAGGGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223934" ref_strand="+" ref_description="SGN-E223934 [cLEL-19-J2](-)">
      <seq>gattggcgtggtgtgctccctagacatgcatacatggctagcgtagtaaaagaactcgaaaaggccttgagtgaatcgacagcaacatggaagattgtactaggtcaccatgccattagaagtgcaggacatcacggtgacactcagatacttgtggatcgttttcttcctattcttaggaagtacgatgttgatttttacatgaacggacatgaccactgtcttgaacatattagcgacactgaaagcccgttgcaatttttagtaagtggagcaggttcaaaggcatggagaggagatattaaaggaataaatagagatgatgtgcattttttccatgatggacaaggtttcatgtctgttgagttgacaccgacagaggctgagatcaaatattatgatgtttttggtagaattagacataggtggagtaggtccaagaatcttcttcactctgctatgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18960" stop="20284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19260" g_stop="19310" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19311" i_stop="19399" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19400" g_stop="19528" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="180" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19529" i_stop="19605" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19606" g_stop="19673" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="248" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19674" i_stop="19754" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19755" g_stop="19986" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="480" r_length="232" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E223934" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19260" e_stop="19310"/>
          <exon e_start="19400" e_stop="19528"/>
          <exon e_start="19606" e_stop="19673"/>
          <exon e_start="19755" e_stop="19986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAAGTAAGTTCAATGTAGACTTCATCAATATTTGTCTAAAAATCATTTATCGTACATTTTAATTTCAAATGATCTATTATTTTTTTTAATAGGAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGGGTAAACTTTTTTCTCTGTTTCATTCACATTCCTTTTGACTTGAAATGTGCTTATAACGTTATTGATTTGCCTTACAGAAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAGGTGAAACTAGACTTCAAAATGTTGCAAAATGACTTTAATTTTAGCAAACATGATGTTGATTTTTGTGTTTGATGTTTGTAGCCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATC</genome_strand>
        <mrna_strand>GATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAA.........................................................................................GAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG.............................................................................AAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAG.................................................................................CCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234602" ref_strand="+" ref_description="SGN-E234602 [cLEL-6-D6](-)">
      <seq>cgtggtgtgctccctagacatgcatacatggctagcgtagtaaaagaactcgaaaaggccttgagtgaatcgacagcaacatggaagattgtactaggtcaccatgccattagaagtgcaggacatcacggtgacactcagatacttgtggatcgttttcttcctattcttaggaagtacgatgttgatttttacatgaacggacatgaccactgtcttgaacatattagcgacactgaaagcccgttgcaatttttagtaagtggagcaggttcaaaggcatggagaggagatattaaaggaataaatagagatgatgtgcattttttccatgatggacaaggtttcatgtctgttgagttgacaccgacagaggctgagatcaaatattatgatgtttttggtagaattagacataggtggagtaggtccaagaatcttcttcactctgctatgtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18966" stop="57598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19266" g_stop="19310" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19311" i_stop="19399" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19400" g_stop="19528" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="174" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19529" i_stop="19605" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19606" g_stop="19673" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="242" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19674" i_stop="19754" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19755" g_stop="19987" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="475" r_length="233" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E234602" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19266" e_stop="19310"/>
          <exon e_start="19400" e_stop="19528"/>
          <exon e_start="19606" e_stop="19673"/>
          <exon e_start="19755" e_stop="19987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAAGTAAGTTCAATGTAGACTTCATCAATATTTGTCTAAAAATCATTTATCGTACATTTTAATTTCAAATGATCTATTATTTTTTTTAATAGGAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGGGTAAACTTTTTTCTCTGTTTCATTCACATTCCTTTTGACTTGAAATGTGCTTATAACGTTATTGATTTGCCTTACAGAAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAGGTGAAACTAGACTTCAAAATGTTGCAAAATGACTTTAATTTTAGCAAACATGATGTTGATTTTTGTGTTTGATGTTTGTAGCCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCT</genome_strand>
        <mrna_strand>CGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAA.........................................................................................GAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG.............................................................................AAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAG.................................................................................CCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235082" ref_strand="+" ref_description="SGN-E235082 [cLEL-6-D6](-)">
      <seq>cgtggtgtgctccctagacatgcatacatggctagcgtagtaaaagaactcgaaaaggccttgagtgaatcgacagcaacatggaagattgtactaggtcaccatgccattagaagtgcaggacatcacggtgacactcagatacttgtggatcgttttcttcctattcttaggaagtacgatgttgatttttacatgaacggacatgaccactgtcttgaacatattagcgacactgaaagcccgttgcaatttttagtaagtggagcaggttcaaaggcatggagaggagatattaaaggaataaatagagatgatgtgcattttttccatgatggacaaggtttcatgtctgttgagttgacaccgacagaggctgagatcaaatattatgatgtttttggtagaattagacataggtggagtaggtccaagaatcttcttcactctgctatgtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18966" stop="57598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19266" g_stop="19310" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19311" i_stop="19399" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19400" g_stop="19528" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="174" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19529" i_stop="19605" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19606" g_stop="19673" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="242" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19674" i_stop="19754" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19755" g_stop="19987" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="475" r_length="233" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E235082" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19266" e_stop="19310"/>
          <exon e_start="19400" e_stop="19528"/>
          <exon e_start="19606" e_stop="19673"/>
          <exon e_start="19755" e_stop="19987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAAGTAAGTTCAATGTAGACTTCATCAATATTTGTCTAAAAATCATTTATCGTACATTTTAATTTCAAATGATCTATTATTTTTTTTAATAGGAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGGGTAAACTTTTTTCTCTGTTTCATTCACATTCCTTTTGACTTGAAATGTGCTTATAACGTTATTGATTTGCCTTACAGAAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAGGTGAAACTAGACTTCAAAATGTTGCAAAATGACTTTAATTTTAGCAAACATGATGTTGATTTTTGTGTTTGATGTTTGTAGCCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCT</genome_strand>
        <mrna_strand>CGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAA.........................................................................................GAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG.............................................................................AAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAG.................................................................................CCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365011" ref_strand="+" ref_description="SGN-E365011 [cLPP-17-N17]">
      <seq>tccctagacatgcatacatggctagcgtagtaaaagaactcgaaaaggccttgagtgaatcgacagcgaaatggaagattgtactaggtcaccatgccattagaagtgcaggacatcacggtgacactcagatacttgtggatcgttttcttcctattcttaggaagtacgatgttgatttttacatgaacggacatgaccactgtcttgaacatattagcgacactgaaagcccgttgcaatttttagtaagtggagcaggttcaaaggcatggagaggagatattaaaggaataaatagagatggtgtgcattttttccatgatggacaaggtttcatgtctgttgagttgacaccaacagaggctgagatcaaatattatgatgtttttggtagaattagacataggtggaataggtccaagaatcttcttcactctgctatgtaaaaaaaagattcttttttggttgtagatactaagttagatgtagaaaagaaattggattctttgtttttgttgttgttgttgagattggattgtgaaaggaagtaatctcacacatttagggttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18976" stop="20394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19276" g_stop="19310" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19311" i_stop="19399" i_length="89">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19400" g_stop="19528" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="164" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19529" i_stop="19605" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19606" g_stop="19673" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="232" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19674" i_stop="19754" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19755" g_stop="20095" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="573" r_length="341" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="574" polyA_stop="583"/>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E365011" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19276" e_stop="19310"/>
          <exon e_start="19400" e_stop="19528"/>
          <exon e_start="19606" e_stop="19673"/>
          <exon e_start="19755" e_stop="20095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTAGACATGCATACATGGCTAGCGTAGTAAAAGTAAGTTCAATGTAGACTTCATCAATATTTGTCTAAAAATCATTTATCGTACATTTTAATTTCAAATGATCTATTATTTTTTTTAATAGGAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGGGTAAACTTTTTTCTCTGTTTCATTCACATTCCTTTTGACTTGAAATGTGCTTATAACGTTATTGATTTGCCTTACAGAAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAGGTGAAACTAGACTTCAAAATGTTGCAAAATGACTTTAATTTTAGCAAACATGATGTTGATTTTTGTGTTTGATGTTTGTAGCCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTG---TT-TT-TTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTC</genome_strand>
        <mrna_strand>TCCCTAGACATGCATACATGGCTAGCGTAGTAAAA.........................................................................................GAACTCGAAAAGGCCTTGAGTGAATCGACAGCGAAATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG.............................................................................AAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAG.................................................................................CCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGGTGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCAACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAATAGGTCCAAGAATCTTCTTCACTCTGCTATGT----AAAAAAAAGATTCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTGTTGTTGTTGTTGAGATTGGATTGTGAAAGGAAGT-AATCTCACACATTTAGGGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360881" ref_strand="-" ref_description="SGN-E360881 [cLPP-13-A21]">
      <seq>catgccattagaagtgcaggacatcacggtgacactcagatacttgtggatcgttttcttcctattcttaggaagtacgatgttgatttttacatgaacggacatgaccactgtcttgaacatattagcgacactgaaagcccgttgcaatttttagtaagtggagcaggttcaaaggcatggagaggagatattaaaggaataaatagagatggtgtgcattttttccatgatggacaaggtttcatgtctgttgagttgacaccaacagaggctgagatcaaatattatgatgtttttggtagaattagacataggtggaataggtccaagaatcttcttcactctgctatgtaaaaaaaagattcttttttggttgtagatactaagttagatgtaaaaaacaaattggattctttgtttttgttgatgttgttgagattggattgtgaaaggaagtaatctcacacatttagggttaatgtattagaatttagatggaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19157" stop="57602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19457" g_stop="19528" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19529" i_stop="19605" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19606" g_stop="19673" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="140" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19674" i_stop="19754" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19755" g_stop="20095" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="481" r_length="341" r_score="0.935"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20096" i_stop="20417" i_length="322">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.53"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20418" g_stop="20464" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="526" r_length="45" r_score="0.532"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E360881" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360881" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="19457" e_stop="19528"/>
          <exon e_start="19606" e_stop="19673"/>
          <exon e_start="19755" e_stop="20095"/>
          <exon e_start="20418" e_stop="20464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGGGTAAACTTTTTTCTCTGTTTCATTCACATTCCTTTTGACTTGAAATGTGCTTATAACGTTATTGATTTGCCTTACAGAAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAGGTGAAACTAGACTTCAAAATGTTGCAAAATGACTTTAATTTTAGCAAACATGATGTTGATTTTTGTGTTTGATGTTTGTAGCCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTG--TTT-TT--TGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTCGTTTGGGTTCAATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTCATGTTTGATTAGTATTTTGAAACCTACATTGCAAATCTGCAATCTGGTATAATCTAATACACAAATGAGTACACACTATCAGTGTAAAAGATTTTTACAATACCTCTCCTCTGTCCTTAATTACTTGTCTATTTTTCCATCTCTAATTAGCACACCTATTAATAACTTTGAAAAAGGAACAACTTTTTAAAAATCTTTAGTTTTTAATTCATCTACTTCATAATTATTAGGGGTAAACTCGTTGTATCAATTATTGTTTTCTTAATAGGTGTGCTAATCTAAAAGTGGACAAGTAAGTAGGGTATAAAAAAACGA</genome_strand>
        <mrna_strand>CATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG.............................................................................AAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAG.................................................................................CCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGGTGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCAACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAATAGGTCCAAGAATCTTCTTCACTCTGCTATGT----AAAAAAAAGATTCTTTTTTGGTTGTAGATACTAAGTTAGATGTAAAAAACAAATTGGATTCTTTGTTTTTGTTGATGTTGTTGAGATTGGATTGTGAAAGGAAGT-AATCTCACACATTTAGGGTTA..................................................................................................................................................................................................................................................................................................................................ATGTATTAGAATTTAGATGGA-AA-AAAAAAAAAAAAAAAAACTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223808" ref_strand="+" ref_description="SGN-E223808 [cLEL-19-J2](-)">
      <seq>ttagaagtgcaggacatcgcggtgacactcagatacttgtggatcgttttcttcctattcttagaaagtacgatgttgatttttacatgaacggacatgaccactgtcttgaacatattagcgacactgaaagcccgttgcaatttttagtaagtggagcaggttcaaaggcatggagaggagatattaaaggaataaatagagatgatgtgcattttttccatgatggacaaggtttcatgtctgttgagttgacaccgacagaggctgagatcaaatattatgatgtttttggtagaattagacataggtggagtaggtccaagaatcttcttcactctgctatgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19164" stop="20284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19464" g_stop="19528" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19529" i_stop="19605" i_length="77">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19606" g_stop="19673" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="133" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19674" i_stop="19754" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19755" g_stop="19986" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="365" r_length="232" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E223808" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19464" e_stop="19528"/>
          <exon e_start="19606" e_stop="19673"/>
          <exon e_start="19755" e_stop="19986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGGGTAAACTTTTTTCTCTGTTTCATTCACATTCCTTTTGACTTGAAATGTGCTTATAACGTTATTGATTTGCCTTACAGAAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAGGTGAAACTAGACTTCAAAATGTTGCAAAATGACTTTAATTTTAGCAAACATGATGTTGATTTTTGTGTTTGATGTTTGTAGCCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATC</genome_strand>
        <mrna_strand>TTAGAAGTGCAGGACATCGCGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGA.............................................................................AAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAG.................................................................................CCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228960" ref_strand="+" ref_description="SGN-E228960 [cLEL-29-G23](-)">
      <seq>gatgtgatttttcatgaacggacatgaccactgtcttgaacatattagcgacactgaaaagcccgttgcaatttttagtaagtggagcaggttcaaaggcatggagaggagatattaaaggaataaatagagatgatgtgcattttttccatgatggacaaggtttcatgtctgttgagttgacaccgacagaggctgagatcaaatattatgatgtttttggtagaattagacataggtggagtaggtccaagaatcttcttcactctgctatgtaaaaaaaaaaaagaatcttttttggttgtagatactaagttagatgtagaaaagaaattggattctttgttttttgttgttgagattggattgtgaaaggaagtaaatctcacacatttagggttcgtttgggttcaatgtattagaatttagatggaataacatatgacagttttgctcatgtttgattaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19312" stop="57598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19612" g_stop="19673" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19674" i_stop="19754" i_length="81">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19755" g_stop="20179" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="486" r_length="425" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E228960" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19612" e_stop="19673"/>
          <exon e_start="19755" e_stop="20179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTG-AAAGGTGAAACTAGACTTCAAAATGTTGCAAAATGACTTTAATTTTAGCAAACATGATGTTGATTTTTGTGTTTGATGTTTGTAGCCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTCGTTTGGGTTCAATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTCATGTTTGATTAGTATTTTGAAACCTACATT</genome_strand>
        <mrna_strand>GATGT-GATTTTT-CATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAAG.................................................................................CCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTCGTTTGGGTTCAATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTCATGTTTGATTAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225395" ref_strand="+" ref_description="SGN-E225395 [cLEL-17-G9](-)">
      <seq>tgaaagcccgttgcaatttttagtaagtggagcaggttcaaaggcatggagaggagatattaaaggaataaatagagatgatgtgcattttttccatgatggacaaggtttcatgtctgttgagttgacaccgacagaggctgagatcaaatattatgatgtttttggtagaattagacataggtggagtaggtccaagaatcttcttcactctgctatgtaaaaaaaaaaaagaatcttttttggttgtagatactaagttagatgtagaaaagaaattggattctttgttttttgttgttgagattggattgtgaaaggaagtaaatctcacacatttagggttcgtttgggttcaatgtattagaatttagatggaataacatatgacagttttgctcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19453" stop="20450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19668" g_stop="19673" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19674" i_stop="19754" i_length="81">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19755" g_stop="20149" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="401" r_length="395" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="402" polyA_stop="420"/>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E225395" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19668" e_stop="19673"/>
          <exon e_start="19755" e_stop="20149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGGTGAAACTAGACTTCAAAATGTTGCAAAATGACTTTAATTTTAGCAAACATGATGTTGATTTTTGTGTTTGATGTTTGTAGCCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTCGTTTGGGTTCAATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTC</genome_strand>
        <mrna_strand>TGAAAG.................................................................................CCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTCGTTTGGGTTCAATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228864" ref_strand="+" ref_description="SGN-E228864 [cLEL-29-G23](-)">
      <seq>gttgcaatttttagtaagtggagcaggttcaaaggcatggagaggagatattaaaggaataaatagagatgatgtgcattttttccatgatggacaaggtttcatgtctgttgagttgacaccgacagaggctgagatcaaatattatgatgtttttggtagaattagacataggtggagtaggtccaagaatcttcttcactctgctatgtaaaaaaaaaaaagaatcttttttggttgtagatactaagttagatgtagaaaagaaattggattctttgttttttgttgttgagattggattgtgaaaggaagtaaatctcacacatttagggttcgtttgggttcaatgtattagaatttagatggaataacatatgacagttttgctcatgtttgattaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19458" stop="57598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19758" g_stop="20179" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E228864" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19758" e_stop="20179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTCGTTTGGGTTCAATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTCATGTTTGATTAGTATTTTGAAACCTACATT</genome_strand>
        <mrna_strand>GTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTCGTTTGGGTTCAATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTCATGTTTGATTAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373635" ref_strand="+" ref_description="SGN-E373635 [TUS-33-M2](-)">
      <seq>gcaggttcaaaggcatggagaggagatattaaaggaataaatagagatggtgtgcattttttccatgatggacaaggtttcatgtctgttgagttgacaccaacagaggctgagatcaaatattatgatgtttttggtagaattagacataggtggaataggtccaagaatcttcttcactctgctatgtaaaaaaaagattcttttttggttgtagatactaagttagatgtagaaaagaaattggattctttgtttttgttgttgttgttgagattggattgtgaaaggaagtaatctcacacatttagggttaatgtattagaatttagatggaataacatatgacagttttgctcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19480" stop="20450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19780" g_stop="20158" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E373635" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.030" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19780" e_stop="20158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTG---TT-TT-TTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTCGTTTGGGTTCAATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTCATGTTTGAT</genome_strand>
        <mrna_strand>GCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGGTGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCAACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAATAGGTCCAAGAATCTTCTTCACTCTGCTATGT----AAAAAAAAGATTCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTGTTGTTGTTGTTGAGATTGGATTGTGAAAGGAAGT-AATCTCACACATTTA----------GGGTT-AATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225837" ref_strand="+" ref_description="SGN-E225837 [cLEL-17-G9](-)">
      <seq>ggttcaaaggcatggagagcagatattaaaggaataaatagagatgatgtgcattttttccatgatggacaaggtttcatgtctgttgagttgacaccgacagaggctgagatcaaatattatgatgtttttggtagaattagacataggtggagtaggtccaagaatcttcttcactctgctatgtaaaaaaaaaaaagaatcttttttggttgtagatactaagttagatgtagaaaagaaattggattctttgttttttgttgttgagattggattgtgaaaggaagtaaatctcacacatttagggttcgtttgggttcaatgtattagaatttagatggaataacatatgacagttttgctccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19483" stop="20449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19783" g_stop="20149" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="369" polyA_stop="386"/>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E225837" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19783" e_stop="20149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTCGTTTGGGTTCAATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTC</genome_strand>
        <mrna_strand>GGTTCAAAGGCATGGAGAGCAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTCGTTTGGGTTCAATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346020" ref_strand="+" ref_description="SGN-E346020 [cTOF-24-G14]">
      <seq>aagaaaagagggagaaagaaaaagagaagaaaaaaaagaaagggatggtttttggagagaattttttttttacatcttgtgatagaaaaaaaaaagaattattgaaagagtttattcataggaagattttacaatagtttaagcacacctatatatctattgaagttgaattaaaaacagaaggattgcggggttttttattatcatttgaattcgaagttgtgtagtggaaggtcatccctttgctcgtttcgtctctagctcgctgccccgaagaaggtgaaatcctttttcttttttttttctttttagatggtgtcattccaccttgctaactatttttttttggtttggtttcttgggtgacatcgattcgagtccattttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21721" stop="22706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22021" g_stop="22406" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E346020" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22021" e_stop="22406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAAGAGGGAGAAAGAAAAAGAGAAGAAAAAAAAGAAAGGGATGGTTTTTGGAGAGAATTTTTTTTTTACATCTTGTGATAG-AAAAGAAAAGAATTATTGAAAGAGTTTATTCATAGGAAGATTTTACAATAGTTTAAGCACACCTATATATCTATTGAAGTTGAATTAAAAACAGAAGGATTGTGAGGTTTTTGATTATCATTTGAATTCGAAGTTGTGTAGTGGAAGGTCATCCCTTTGCTCGTTTCGTCTCTAACTCGCTGCCCCGAAGAAGGTGAAATCC--TTT-TTTTTTTTTTCTTTTTAGATGTTGTCATTCCACCTTGCTAACTATTTTTTTTTTGTTTTGTTTTCTTGTGTGACATCGATTCGAGTCCATTTTGGA</genome_strand>
        <mrna_strand>AAGAAAAGAGGGAGAAAGAAAAAGAGAAGAAAAAAAAGAAAGGGATGGTTTTTGGAGAGAATTTTTTTTTTACATCTTGTGATAGAAAAAAAAAAGAATTATTGAAAGAGTTTATTCATAGGAAGATTTTACAATAGTTTAAGCACACCTATATATCTATTGAAGTTGAATTAAAAACAGAAGGATTGCGGGGTTTTTTATTATCATTTGAATTCGAAGTTGTGTAGTGGAAGGTCATCCCTTTGCTCGTTTCGTCTCTAGCTCGCTGCCCCGAAGAAGGTGAAATCCTTTTTCTTTTTTTTTTCTTTTTAGATGGTGTCATTCCACCTTGCTAACTA-TTTTTTTTTGGTTTGGTTTCTTGGGTGACATCGATTCGAGTCCATTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326764" ref_strand="+" ref_description="SGN-E326764 [cTOC-25-A24]">
      <seq>gaaaagaagaaaagagggagaaagaaaaagagaagaaaaagaagaagaaaaaaaagaaagggatggttttctggagagaattttttttttacatcttgtgatagaaaagaaaagaattattgaaagagtttattcataggaagattttacaatagtttaagcacacctatatatctattgaagttgaattaaaaacagaaggattgcggggtttttgattatcatttgaattcgaagttgtgtagtggaaggtcatccctttgctcgtttcgtctctagcttgctgccccgaagaaggtaatcctttttttttctttcttcttttttagatgttgtcattccaccttgctaactatttttttttgttttgttttcttgtgtgacatcgattcgagtccactttggattccattcttgcattcctcgttgagccataaagtctcaaaacactttttccgagtcagccaaccccctgagaggatgtacaggtcgaaagcaaaaccattggagagctgctggaagtagcggattgcaggcatttggctgcgatttttgttttgaagctgtgtatctggtttatacacaatatatacactgtgatacaggttaaaaatccacaggaggcccaaactcaaaatctgaattgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21711" stop="22949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22045" g_stop="22649" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="649" r_length="607" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E326764" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22045" e_stop="22649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAAAAAAAGAAAGGGATGGTTTT-TGGAGAGAATTTTTTTTTTACATCTTGTGATAGAAAAGAAAAGAATTATTGAAAGAGTTTATTCATAGGAAGATTTTACAATAGTTTAAGCACACCTATATATCTATTGAAGTTGAATTAAAAACAGAAGGATTGTGAGGTTTTTGATTATCATTTGAATTCGAAGTTGTGTAGTGGAAGGTCATCCCTTTGCTCGTTTCGTCTCTAACTCGCTGCCCCGAAGAAGGTGAAATCCTTTTTTTT-TTT-TTC-TTTTTAGATGTTGTCATTCCACCTTGCTAACTATTTTTTTTTTGTTTTGTTTTCTTGTGTGACATCGATTCGAGTCCATTTTGGATTCCATTCTTGCATTCCTCGTTGAGCCATAAAGGCTCAAAACACTTTTCCCGAGTCAGCCAACCCCCTGAAAGGATGTACAGGTCGAAAGCAAAACCATTGGAGAGCTGCTGGAAGTAGCGGATTGCAGGCATTTGGCTGCGATTTTTGTTTTGAAGTTGTGTATCTGGTTTATACACAATATATACACTGTGATACAGGTCAAAAATCCACAGGAGGCCCAAATTCAAAATCTGAATTGATG</genome_strand>
        <mrna_strand>AGAAGAAAAAAAAGAAAGGGATGGTTTTCTGGAGAGAATTTTTTTTTTACATCTTGTGATAGAAAAGAAAAGAATTATTGAAAGAGTTTATTCATAGGAAGATTTTACAATAGTTTAAGCACACCTATATATCTATTGAAGTTGAATTAAAAACAGAAGGATTGCGGGGTTTTTGATTATCATTTGAATTCGAAGTTGTGTAGTGGAAGGTCATCCCTTTGCTCGTTTCGTCTCTAGCTTGCTGCCCCGAAGAAGGT-AATCCTTTTTTTTTCTTTCTTCTTTTTTAGATGTTGTCATTCCACCTTGCTAACTA-TTTTTTTTTGTTTTGTTTTCTTGTGTGACATCGATTCGAGTCCACTTTGGATTCCATTCTTGCATTCCTCGTTGAGCCATAAAGTCTCAAAACACTTTTTCCGAGTCAGCCAACCCCCTGAGAGGATGTACAGGTCGAAAGCAAAACCATTGGAGAGCTGCTGGAAGTAGCGGATTGCAGGCATTTGGCTGCGATTTTTGTTTTGAAGCTGTGTATCTGGTTTATACACAATATATACACTGTGATACAGGTTAAAAATCCACAGGAGGCCCAAACTCAAAATCTGAATTGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390285" ref_strand="+" ref_description="SGN-E390285 [TUS-40-O1](-)">
      <seq>atcatttttaaaacttacttaacaagtgtatatcatcgcccgataatgtatacttatgtatacgggctgcaccatacgtccgccccccccccctaattccgaattttaattagaataggtgttcctctacgttcctctgccaatcatattttttgagcatatatatagtatatcatccctgtatatctgtgtatacaggatatatttaagcctgttcttcaactttcagaagttgaaaactcctttccataaacgtaatttccctgtcgtcaactccgattttgagtttgggcctcctgtggatgtttgacctgtatcacagtgtatatattgtgtataaaccagatacacagcttcaaaacaaaaatcgcagccaaatgcctgcaatccgccacttccagcagctctccaatggttttgcttgccacctgtacatcctttcaggggttgtctgactcgggaaaagtgttttgagcctttatggctcaacgaggaatgcaagaatggaatccaaagtggactcgaatcgatgtcacacaagaaaacaaaacaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23216" stop="22059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22916" g_stop="22359" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E390285" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22916" e_stop="22359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTTTTTAAACCTGTTTAACAATTATATATCGTCGCCCGATAATGTATACTAATGTATACGGGCTGCACCCTGCGTCCGTATTAATTGCCTAATCCCGAATTTTAGTTAAAACAAGCATCCGTGTACGTTCCCCTGCCAATCATATTTTTTGAGCATATATATAGTATATCATCTCTGTATATCTGTGTATACAGGCTGTATATAAGCCTGTTTTTCAACTTTCGGAAGTTGAAAACTCCTTTCCAGAAACGCAATTTTCCTGTCATCAATTCAGATTTTGAATTTGGGCCTCCTGTGGATTTTTGACCTGTATCACAGTGTATATATTGTGTATAAACCAGATACACAACTTCAAAACAAAAATCGCAGCCAAATGCCTGCAATCCGCTACTTCCAGCAGCTCTCCAATGGTTTTGCTTTCGACCTGTACATCCTTTCAGGGGGTTGGCTGACTCGGGAAAAGTGTTTTGAGCCTTTATGGCTCAACGAGGAATGCAAGAATGGAATCCAAAATGGACTCGAATCGATGTCACACAAGAAAACAAAACAAAAAA</genome_strand>
        <mrna_strand>ATCATTTTTAAAACTTACTTAACAAGTGTATATCATCGCCCGATAATGTATACTTATGTATACGGGCTGCACCATACGTCCGCCCCCCCCCCCTAATTCCGAATTTTAATTAGAATAGGTGTTCCTCTACGTTCCTCTGCCAATCATATTTTTTGAGCATATATATAGTATATCATCCCTGTATATCTGTGTATACAGGATATATTTAAGCCTGTTCTTCAACTTTCAGAAGTTGAAAACTCCTTTCCATAAACGTAATTTCCCTGTCGTCAACTCCGATTTTGAGTTTGGGCCTCCTGTGGATGTTTGACCTGTATCACAGTGTATATATTGTGTATAAACCAGATACACAGCTTCAAAACAAAAATCGCAGCCAAATGCCTGCAATCCGCCACTTCCAGCAGCTCTCCAATGGTTTTGCTTGCCACCTGTACATCCTTTCA-GGGGTTGTCTGACTCGGGAAAAGTGTTTTGAGCCTTTATGGCTCAACGAGGAATGCAAGAATGGAATCCAAAGTGGACTCGAATCGATGTCACACAAGAAAACAAAACAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312705" ref_strand="+" ref_description="SGN-E312705 [cTOA-8-G23]">
      <seq>tttttttttttgttttcttgtgtgacatcgattcgagtccattttggattccattcttgcattcctcgttgagccataaagactcaaaacacttttcccgagtcagccaaccccctgaaaggatgtacaggtcgaaagcaaaaccattggagagctgctggaagtagcggattgcaggcatttggctgtgatttttgttttgaagttgtgtatctggtttatacacaatatatacactgtgatacaggccaaaaatccacaggaggcccaaactcaaaatctgaattgacgacaggaaaattacgtttctggaaaggagttttcaacttccgaaagttgaaaaacaggcttatataccagcctgtatacacagatataccagagatgatatactatatatatgctcaaaaaatatgattggcaggggaacgtacacggacgcttgttttaactaaaattcgggattaggcaattaatacggacgcggggtgcagcccgtatacatcagtatacattatcgggtgatgatatacacttgttaagtaagttttaaaaaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22059" stop="23216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22359" g_stop="22916" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E312705" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22359" e_stop="22916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGTTTTGTTTTCTTGTGTGACATCGATTCGAGTCCATTTTGGATTCCATTCTTGCATTCCTCGTTGAGCCATAAAGGCTCAAAACACTTTTCCCGAGTCAGCCAACCCCCTGAAAGGATGTACAGGTCGAAAGCAAAACCATTGGAGAGCTGCTGGAAGTAGCGGATTGCAGGCATTTGGCTGCGATTTTTGTTTTGAAGTTGTGTATCTGGTTTATACACAATATATACACTGTGATACAGGTCAAAAATCCACAGGAGGCCCAAATTCAAAATCTGAATTGATGACAGGAAAATTGCGTTTCTGGAAAGGAGTTTTCAACTTCCGAAAGTTGAAAAACAGGCTTATATA-CAGCCTGTATACACAGATATA-CAGAGATGATATACTATATATATGCTCAAAAAATATGATTGGCAGGGGAACGTACACGGATGCTTGTTTTAACTAAAATTCGGGATTAGGCAATTAATACGGACGCAGGGTGCAGCCCGTATACATTAGTATACATTATCGGGCGACGATATATAATTGTTAA-ACAGGTTTAAAAAATGAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTGTTTTCTTGTGTGACATCGATTCGAGTCCATTTTGGATTCCATTCTTGCATTCCTCGTTGAGCCATAAAGACTCAAAACACTTTTCCCGAGTCAGCCAACCCCCTGAAAGGATGTACAGGTCGAAAGCAAAACCATTGGAGAGCTGCTGGAAGTAGCGGATTGCAGGCATTTGGCTGTGATTTTTGTTTTGAAGTTGTGTATCTGGTTTATACACAATATATACACTGTGATACAGGCCAAAAATCCACAGGAGGCCCAAACTCAAAATCTGAATTGACGACAGGAAAATTACGTTTCTGGAAAGGAGTTTTCAACTTCCGAAAGTTGAAAAACAGGCTTATATACCAGCCTGTATACACAGATATACCAGAGATGATATACTATATATATGCTCAAAAAATATGATTGGCAGGGGAACGTACACGGACGCTTGTTTTAACTAAAATTCGGGATTAGGCAATTAATACGGACGCGGGGTGCAGCCCGTATACATCAGTATACATTATCGGGTGATGATATACACTTGTTAAGTAAGTTTTAAAAAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320939" ref_strand="+" ref_description="SGN-E320939 [cTOB-13-E2]">
      <seq>actgtgatacaggtcaaaaatccacaggaggcccaaattcaaaatctgaattgatgacaggaaaattgcgtttctggaaaggagttttcaacttccgaaagttgaaaaacaggcttatatacagcctgtatacacagatatacagagatgatatactatatatatgctcaaaaaatatgattggcaggggaacgtacacggatgcttgttttaactaaaattcgggattaggcaattaatacggacgcagggtgcagcccgtatacattagtatacattatcgggcgacgatatataattgttaaacaggtttaaaaaatgatacaggtacaaatatgcagagacgatatgcgaaatataggggaaatagctgaaaatgcgtatataaataaatgcagggctcaaaaggtccaaaatggatgctgatatacaccgtatacaacagtatacatcttttgtatactttatatctcctttttcaggaaattgggctaaggcccttcagttcccttttatcaacaggcccaataaccatttgtttttacaggttttttttttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22294" stop="23458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22594" g_stop="23158" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E320939" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22594" e_stop="23158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTGATACAGGTCAAAAATCCACAGGAGGCCCAAATTCAAAATCTGAATTGATGACAGGAAAATTGCGTTTCTGGAAAGGAGTTTTCAACTTCCGAAAGTTGAAAAACAGGCTTATATACAGCCTGTATACACAGATATACAGAGATGATATACTATATATATGCTCAAAAAATATGATTGGCAGGGGAACGTACACGGATGCTTGTTTTAACTAAAATTCGGGATTAGGCAATTAATACGGACGCAGGGTGCAGCCCGTATACATTAGTATACATTATCGGGCGACGATATATAATTGTTAAACAGGTTTAAAAAATGATACAGGTACAAATATGCAGAGACGATATGCGAAATATAGGGGAAATAGCTGAAAATGCGTATATAAATAAATGCAGGGCTCAAAAGGTCCAAAATGGATGCTGATATACACCGTATACAACAGTATACATCTTTTGTATACTTTATATCTCCTTTTTCAGGAAATTGGGCTAAGGCCCTTCAGTTCCCTTTTATCAACAGGCCCAATAACCATTTGTTTTTACAGGTTTTTTTTTTAAAAAAA</genome_strand>
        <mrna_strand>ACTGTGATACAGGTCAAAAATCCACAGGAGGCCCAAATTCAAAATCTGAATTGATGACAGGAAAATTGCGTTTCTGGAAAGGAGTTTTCAACTTCCGAAAGTTGAAAAACAGGCTTATATACAGCCTGTATACACAGATATACAGAGATGATATACTATATATATGCTCAAAAAATATGATTGGCAGGGGAACGTACACGGATGCTTGTTTTAACTAAAATTCGGGATTAGGCAATTAATACGGACGCAGGGTGCAGCCCGTATACATTAGTATACATTATCGGGCGACGATATATAATTGTTAAACAGGTTTAAAAAATGATACAGGTACAAATATGCAGAGACGATATGCGAAATATAGGGGAAATAGCTGAAAATGCGTATATAAATAAATGCAGGGCTCAAAAGGTCCAAAATGGATGCTGATATACACCGTATACAACAGTATACATCTTTTGTATACTTTATATCTCCTTTTTCAGGAAATTGGGCTAAGGCCCTTCAGTTCCCTTTTATCAACAGGCCCAATAACCATTTGTTTTTACAGGTTTTTTTTTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356241" ref_strand="+" ref_description="SGN-E356241 [cTOS-20-D24]">
      <seq>taaatagattaggacaggtgggccaaagcccaattggatggatttgggcaatcaagcccaagttcaaatatttttctctctttatttattatttgtttgaattaattagtgttttggtagaattttaataatctcctaaagagtagccatttttcattattttaaattttactattttattcacttttatcaccatttagttttccttaaattaattccctctaaacattttccttaagaaaaaaaaaagtaaaaagaatgaaatacaaaatatcaaaatgaattttctcttttacttagttaaaaatttttattttaaaagtcatttagtcaaatcgccggtcaaccgcaagttagcgggcatcccgagggcctaacaccttctcgagatgtacattgaacttcgaacccttttcaattgatttttaatctgtttttnaatcttttgaagtttttcttgattttgtcaaaaatcaagtggcgactccaattttgaaggtcggtttttctttaacaataagattaattgatttttcgaaacctagtcaattttttctcatttctccattttaacataacagtagtatattttttaagtaaaacacataatactcatgtaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22874" stop="24097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23174" g_stop="23796" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E356241" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23174" e_stop="23796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATAGATTATGACAGGTGGGCCAAAGCCCAATTGGATGGATTTGGGCAATCAAACCCAAGTTCAAATATTTTTCTCTCTTTATTTATTATTTGTTTGAATTAATTAGTGTTTTGGTAGAATTTTAATAATCTCCTAAAGAGTAGCCATTTTTCATTATTTTAAATTTTACTATTTTATTCACTTTTATCACCATTTAGTTTTCCTTAAATTAATT-CCTCTAAACATTTCCCTTTAGAAAAAAAAAAGTAAAAAGAATGAAATACAAAATATCAAAATGAATTTTCTCTTTTACTTAGTTAAAAATTTTTATTTTAAAAGTCATTTAGTCAAATCGCCGGTCAACCGCAAGTTAGCGGGCATCCCGAGGGCCTAACACCTTCTCGAGATGTACATTGAAGTTCGAACCCTTTTCAATTGATTTTTAATCTGTTTTTTAAATCTTTTGAAGTTTTTCTTGATTTTATCAAAAATCAAGTGGCGACTCCAATTTTGAAGGTCGGTTTTTCTTAAACAATAAGATTAATTGATTTTTCGAAACCTAGTCAATTTTTTCTCATTTCTCCCATTAAACATAAACAGTAGTAT-TTTTTTAAGTGAAACATCAAGTATTACTTTGCTCA</genome_strand>
        <mrna_strand>TAAATAGATTAGGACAGGTGGGCCAAAGCCCAATTGGATGGATTTGGGCAATCAAGCCCAAGTTCAAATATTTTTCTCTCTTTATTTATTATTTGTTTGAATTAATTAGTGTTTTGGTAGAATTTTAATAATCTCCTAAAGAGTAGCCATTTTTCATTATTTTAAATTTTACTATTTTATTCACTTTTATCACCATTTAGTTTTCCTTAAATTAATTCCCTCTAAACATTTTCCTTAAGAAAAAAAAAAGTAAAAAGAATGAAATACAAAATATCAAAATGAATTTTCTCTTTTACTTAGTTAAAAATTTTTATTTTAAAAGTCATTTAGTCAAATCGCCGGTCAACCGCAAGTTAGCGGGCATCCCGAGGGCCTAACACCTTCTCGAGATGTACATTGAACTTCGAACCCTTTTCAATTGATTTTTAATCTG-TTTTTNAATCTTTTGAAGTTTTTCTTGATTTTGTCAAAAATCAAGTGGCGACTCCAATTTTGAAGGTCGGTTTTTCTTTAACAATAAGATTAATTGATTTTTCGAAACCTAGTCAATTTTTTCTCATTTCTCCATTTTAACAT-AACAGTAGTATATTTTTTAAGTAAAACACATAATACTCATGTAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540856" ref_strand="+" ref_description="SGN-E540856 [TUS-61-F15](-)">
      <seq>ttgcatcagttcctgacccaggtgccatggctgcagctgcgtggtacagagcagctgcgttagctgtgaaggagaagtataatacagcataagcatatttaatcggccattcctattacttcctgcaggaatgttttctctttctcgaggaagaaattaacccaacaattttttgctcgtaaaccttatgaggagttagctttccgcttatgcagtcctgcataaagccgagagagtgtagaaaatgtatgttacagtccttttatacagtgttctaagtgagggaaaaaacaaacactgccatgtagaatggtaatctgtgaaggtggttgtaaactttattgtaacaatggattttcttattctgctacttttagcatctcttcgcgcaccttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30584" stop="29585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30284" g_stop="29882" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E540856" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30284" e_stop="29882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTACTTTTAGCATCTCTTCGCGCACCTTTACAACGC</genome_strand>
        <mrna_strand>TTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTACTTTTAGCATCTCTTCGCGCACCTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548454" ref_strand="+" ref_description="SGN-E548454 [TUS-61-F15]">
      <seq>ttgcatcagttcctgacccaggtgccatggctgcagctgcgtggtacagagcagctgcgttagctgtgaaggagaagtataatacagcataagcatatttaatcggccattcctattacttcctgcaggaatgttttctctttctcgaggaagaaattaacccaacaattttttgctcgtaaaccttatgaggagttagctttccgcttatgcagtcctgcataaagccgagagagtgtagaaaatgtatgttacagtccttttatacagtgttctaagtgagggaaaaaacaaacactgccatgtagaatggtaatctgtgaaggtggttgtaaactttattgtaacaatggattttcttattctgctacttttagcatctcttcgcgcacctttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30584" stop="29585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30284" g_stop="29882" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E548454" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30284" e_stop="29882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTACTTTTAGCATCTCTTCGCGCACCTTTACAACGC</genome_strand>
        <mrna_strand>TTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTACTTTTAGCATCTCTTCGCGCACCTTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289940" ref_strand="+" ref_description="SGN-E289940 [cLET-9-H7]">
      <seq>tgcatcagttcctgacccaggtgccatggctgcagctgcgtggtacagagcagctgcgttagctgtgaaggagaagtataatacagcataagcatatttaatcggccattcctattacttcctgcaggaatgttttctctttctcgaggaagaaattaacccaacaattttttgctcgtaaaccttatgaggagttagctttccgcttatgcagtcctgcataaagccgagagagtgtagaaaatgtatgttacagtccttttatacagtgttctaagtgagggaaaaaacaaacactgccatgtagaatggtaatctgtgaaggtggttgtaaactntattggaacaatggattttcttattctgctacttttagcatctcttcgcgcacctttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30583" stop="29585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30283" g_stop="29882" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E289940" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30283" e_stop="29882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTACTTTTAGCATCTCTTCGCGCACCTTTACAACGC</genome_strand>
        <mrna_strand>TGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTNTATTGGAACAATGGATTTTCTTATTCTGCTACTTTTAGCATCTCTTCGCGCACCTTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745008" ref_strand="+" ref_description="SGN-E745008 [GI|1929055]">
      <seq>gaattcggcacgagcctctataaatcttttttttccccttctctctctttttgtgtttgttcagacttcggacaaagcattcaacaattgaagtctactctccccacacctacaaagccctcagcacaattatccgatggattttcagagcaaaaaactcatcaacgaccccaatgatgttgtgacagagttcattgagggacttattgagaattatccagggttgcagtatctggatggtttcccagaggttaaggtcgtcttgcgtgctgatgtttctggtgcaaaatatgacaaagttgccatcatatcaggtggtggaagtggccatgagcctgctcatgctggatttgttggagaagggatgctgactgcagctatctgtggggacgtttttgcctctccaaatgttgattcaattcttgcgggcatacgagctgtcacaggtcccatggggtgccttcttattgtcaagaactatactggtgatcgactgaattttggtttggctgctgaacaagcaaaatctgaaggttataaagtcgagatggtaatcgtcggtgatgactgtgctttaccacctccaagaggcattgctggccgaagagggttggcagggacgcttcttgttcacaaggttgccggagctgcagcagcttgtggtcttccccttgctgacgttgcagctgaagccaaacgtgcatcagaaatggttgggacaatgggcgttgcgttatctgtttgcacgtcgccaggacaggtgacttcagaccgtttaggcccagggaagatggagcttggtcttggaatacatggggaaccaggagctgctgtagctgaccttcaaccagtagatgtggtggtttctcatgttctgaaggagattttgtcaccggagaccaactacgttccaatcacgcgtgggagtagagtcgtgctcctgattaatggattaggagcaacaccattgatggaattgatgattatagctggcaaggctgtcccagaattgcagcttgaacatggtctagctgttgatagagtctatacagggtcatttatgacgtcacttgatatggcaggcttttcaatttcggtaatgaaggctgatcaagcaattttagatcgtttagatgctccaactaaagctccaaattggcctgttggtgctgaaggcaaccggcctcctgcaaagattcctgttccacttccgccatcacattctatcaagattgaaaagacattgagtcggcctgaaaaactgagccctcagggtcatatccttgagacagctattgaagcagcagctactgaagttgtaaatctcagggataatttgaatgagtgggacaataaagttggtgatggcgattgtggttcaactatgttcagaggtgctgtggctatacttgaagacatgaagaagtactatccgttgaatgaccctgcagaaacagtcaatgaaattggagcctccattggaagagtaatggggggaactagcggtatcttatacagtatattctgtaaggcagcatatgcgaagttgaaagaaaatgctgagtcggttgtcacagctattcactgggctgatgcacttgaagctgctatcgctgctgttagtaaatatggaggagctagtgctggttatcgtacccttttagatgctcttataccagcattgtcagctcttaaagagaggttgaatgctggggacgaccctgcggatgctttcattatttctgctgaggcagcatctgctggagccgagtcaaccaagcacatgcaggcgcaggctggccgttcaacctatgtacccggagatattcttgcatcagttcctgacccaggtgccatggctgcagctgcgtggtacagagcagctgcgttagctgtgaaggagaagtataatacagcataagcatatttaatcggccattcctattacttcctgcaggaatgttttctctttctcgaggaagaaattaacccaacaattttttgctcgtaaaccttatgaggagttagctttccgcttatgcagtcctgcataaagccgagagagtgtagaaaatgtatgttacagtccttttatacagtgttctaagtgagggaaaaaacaaacactgccatgtagaatggtaatctgtgaaggtggttgtaaactttattgtaacaatggattttcttattctgctacttttagcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40671" stop="29606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40371" g_stop="40262" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="124" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40261" i_stop="40173" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40172" g_stop="40121" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="176" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40120" i_stop="38589" i_length="1532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38588" g_stop="38515" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="250" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38514" i_stop="38405" i_length="110">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38404" g_stop="38341" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="314" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38340" i_stop="37585" i_length="756">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37584" g_stop="37472" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="427" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37471" i_stop="37375" i_length="97">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37374" g_stop="37327" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="475" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37326" i_stop="37076" i_length="251">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="37075" g_stop="37004" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="547" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="37003" i_stop="36861" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="36860" g_stop="36771" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="637" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="36770" i_stop="35725" i_length="1046">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="35724" g_stop="35551" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="811" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="35550" i_stop="35199" i_length="352">
            <donor d_prob="0.210" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="35198" g_stop="35115" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="812" r_stop="895" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="35114" i_stop="34325" i_length="790">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.709" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="34324" g_stop="34269" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="896" r_stop="951" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="34268" i_stop="33931" i_length="338">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="33930" g_stop="33800" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="952" r_stop="1082" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="33799" i_stop="33732" i_length="68">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="33731" g_stop="33639" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1083" r_stop="1175" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="33638" i_stop="33347" i_length="292">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="33346" g_stop="33282" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1176" r_stop="1240" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="33281" i_stop="33051" i_length="231">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="33050" g_stop="32907" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1241" r_stop="1384" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="32906" i_stop="32823" i_length="84">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="32822" g_stop="32779" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1385" r_stop="1428" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="32778" i_stop="31922" i_length="857">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="31921" g_stop="31838" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1429" r_stop="1512" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="17">
          <gDNA_intron_boundary i_start="31837" i_stop="31738" i_length="100">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="18">
          <gDNA_exon_boundary g_start="31737" g_stop="31664" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1513" r_stop="1586" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="18">
          <gDNA_intron_boundary i_start="31663" i_stop="31575" i_length="89">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="19">
          <gDNA_exon_boundary g_start="31574" g_stop="31462" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1587" r_stop="1699" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="19">
          <gDNA_intron_boundary i_start="31461" i_stop="31373" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="20">
          <gDNA_exon_boundary g_start="31372" g_stop="31277" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1700" r_stop="1795" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="20">
          <gDNA_intron_boundary i_start="31276" i_stop="30319" i_length="958">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="21">
          <gDNA_exon_boundary g_start="30318" g_stop="29907" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1796" r_stop="2207" r_length="412" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2208" polyA_stop="2225"/>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E745008" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2193</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40371" e_stop="40262"/>
          <exon e_start="40172" e_stop="40121"/>
          <exon e_start="38588" e_stop="38515"/>
          <exon e_start="38404" e_stop="38341"/>
          <exon e_start="37584" e_stop="37472"/>
          <exon e_start="37374" e_stop="37327"/>
          <exon e_start="37075" e_stop="37004"/>
          <exon e_start="36860" e_stop="36771"/>
          <exon e_start="35724" e_stop="35551"/>
          <exon e_start="35198" e_stop="35115"/>
          <exon e_start="34324" e_stop="34269"/>
          <exon e_start="33930" e_stop="33800"/>
          <exon e_start="33731" e_stop="33639"/>
          <exon e_start="33346" e_stop="33282"/>
          <exon e_start="33050" e_stop="32907"/>
          <exon e_start="32822" e_stop="32779"/>
          <exon e_start="31921" e_stop="31838"/>
          <exon e_start="31737" e_stop="31664"/>
          <exon e_start="31574" e_stop="31462"/>
          <exon e_start="31372" e_stop="31277"/>
          <exon e_start="30318" e_stop="29907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTATAAATCTTTTTTTTCCCCTTCTCTCTCTTTTTGTGTTTGTTCAGACTTCGGACAAAGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAGGTTTTTCTTTCTTCTCAAAGAAGACACTTCACTTTTTTTTCTCTTTCTCTTTGAATTTTTTCTAATTTGTATCGCCTCTGTAAATGCAGCACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATGGTAACTGAAACCCCTAAAAATTGCTCTTATCGTTTTTACTTTGTTCTTCTTTCTCAATTGGATTGTTTATTGGATGTTGATGTGACAGATTGTTTATGTGCATTGCTTGTCATGTTCGTTGAATTGAAAGATGAGATTTTGTATAATTTGAGAAAGGGATTTTTTTAATCAATCGAGTTGTTTGAGTATATACGATCCTTTGTGGAAGTAGAAAAGAAAAAGAATTGACATTAGTGTTTTGTCTTGTTGGAAATGAAGGGAAGTCAAATATAGGAATAAAAAAGATTTAGTTTTAGGTATTAGGTAGAACTACTTATTTGCTATGCTTATCATACCAAACCTAAAGTAAGAGCATATGTGTAGAAAGGAGAAAAGTGTTTTGTTTTGATAACTGTGTTGTCCGGTTTCCGGTTTCCATTGTCTAGGACAACTTACCCTCAGTTAGACTAATTACACGGGGTACTAGCTAATGCGTAATAACACATATATCGATTAACTCTGTCCACCGCGGTATGGATAGAGGGGAAGAAATCGCCTAGTGCTTTTTGCCTAGGGATTTGAACATGAGAATTCATGCTTCTCAATTCACTTCGTCAACCACTAGGTCACATCTTTGGACGCGCCTTTTCGCTTCTAGAAATCTAGAACATTTATGGACCAATGTAAAAAAAAGAAATTCAACATTTTGACAGTAGCGAGGAGAAGGAAAGGAGTTGAAAGGGGCATGTATCCTTTTTTTTTTCTAAAGAAAGAGGGCTACTTCACGAGTCGCTTCTAATAATTGAAAAGGTTCACAACTAGTTCAGTCTATAGTGACAAAGGGAATGTTTCTGCCGGAGCCATGGAAAAAAGTATTCACTCCTGCTTACAGCACCTTCTTCACTCGTCTCGCTACTTCAGAACTGTTCAGCGGACACGTGGAGTCAAATGCAAACCATTTGTGGGAATTTGAGAACTTTCTCTTTTATCTCTTTCTCCTTGCTGGAAGGCTGTTTATGAGCGGAAGGGAAGTAGAGGTAGAGGGTCCGAAGGAGAGAGGAGATCTCTGCTATTATCGTTAATTAGGTGTGCCTCCAGATCCGAATGTATACCCTAGGCCAAGGGGTGCGATCACTTACAATGATCGGAGGCAGGTCAGGGGCTGGCGGATGCCCCCAGCTTCTTAAGTTTGGGAATTCCAAATGTTCTGGCACTTAATTTACATTAAAAAATGAATTAGTGTGGTAATGAAATGGGCCTGAATATGAAAGACTGGATGTATAAGGTTCACGTAGCTGATCAGAACTAATTTGGAATTGAGATCTAGTTGAATGACATCATATTCTGTTTCAATAGAAATGTATGTACATTAATATTTTCCTTATCAAAATTAATAAAAGAAATGTATGTACACTTTTGTGTGTCATATGTATGTGGCAGAATTAAATGTTATAGAGCTTTGTGAAGCTTATAATAGGTACTGTAGGTCTTATGTTATGTATGTAAATCCTAATAATTATCTGCTGTAGAGACTGAAGTGCAATGATTTGCAGATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAGGTGATCTGCCTTCAAATACTTTGTTGACTTTTTTGTTTACATGTCTCTCTACTAAGATAATATGTGTTGCAAGTTGGTTGTAACATGTTATCTTCTGTGCTGAACGCCAGGTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAGGTTTCTTCAATTTGAACTGTGTTTCATGTCTATATTTCAACACTGGAGTTTGCGTTTCAGTGGTAGCAATAATAATTTGGCATTCAGAGTGTCATACACAAGTTAGAAAAAGATCAAGCTTGACAAACTAATCAATCTGTATAATAGTGAAACTGGTTCTTATAATCAGTTAATACTATAGGTCTTGTATGCATTCCTTGCTCACCTCCTCTGAAAGATAATATCAGTTGCGTATGAGATTCTGCTGCAGTTTTGTGTTTAAAACTAAATACAGTTTTCAGTAGTTCCTTTATATGCAATGACTAATCATTTTCTGTTTCATGGGGTGATAATTTTATCAATGTGGTTCAGATCTTCCCATAAAGAAGTGGTATAGAACGTAAAAGAAATTGGTTCCCTACAAATGACTCCTAAACATCTAACACTAACATAAACCTCACGGGTGCACCAAAACTTTTCTAGAAATAAAAGGCATGCTCCGAATGCACAAAATTGTTTTCCACTCCTTCAAGGCTGTCTTGTATATTTCCCATAAGTACCCACATATTAGCCAAAGGAGCGGCATCCCATCCTCTGCATCTTCTTTTCCTTAGCTGGACAGAACAACCTTGAACTCTAGCTGCCATTGACCACTAATTATATACGAATTTACGACTTAAAAGTGTTCTTGAGAATCTTTAACTTGGGATGTATCTTTGGAACTTCAGTGAAGTGAAGTGCAGTTTAACCTGGTATCTTGGTACTTCTATAACTTAGGTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCGGTATGATATGCTATTAAGTATTACCCCCTCTGTTAGCATGTAGACATATATAAATTCTTCCCTATTTATGTCTGTCTACTGACCTGATTCAATTTAGGGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAGGTACCACTTATCCTAGCTGTTAATTTTATTCCTACCCTTGTCTAGTTTTACCAGTTAGGTTTAATGGGGTTGACAGTGCACATAAAGGATCACCAATTATCATCCTACTTTTGGATATTTACTGTTGAAAGAAAGATGCGGCGGATTGCTGTTACATTCTTCATTTATGGTTAATAATTTATAACTCATAATGAAGTCATTTCATGATTTGCTTACATTTCATGATTACAATGCGCTTTGGTTCTTTACAGAACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAGGTATCATTGTGATATCAGTATAATTAATTTGTTGCTATTTATTATTTTTAATATGATGACAATGATTGCAGTAGCCAAGTAATCATCAAAAACTGGCAGAAAGTACTCACTGATATACATGCATATATTTTTCTTTATCCCAGATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAGGTTCACAATCTCTATCTGCGTGCATGTCTTTTAGATTTCATTTGAATGGATATATTTGACTTCAGTCATCACTGATTGAAGCTTTTACAATTTTCCTCTCAATTCAAAACAAAATTTTTCCTTTTGATACCACCTACACAATATATTGGAGTTCTATGTGTTTTGTGTAATATATCTGCTTCTCTTTCCTTTAGTTCAAAGTGCATTCACATATTTTTATGGGGCCTCCTATTAAATCCATTGAGTTTCATATTAGTGTGGCACAATGTTTGATAGAACAATATAATTCATTTTACTGTGCCACATTACATAATGTTGTTCCAAGGTCACAAGAAACAATAATATTAATTATCTCTTTGGTGTTCTTTACTTTTCAATGATACATAAGAGAACTATTAGTTACCAGTTTAAAAAAAAAATGTAAGAGAACTATCTCTGATCATTTGAGTGACAACATTTTCAGCTATTTAAAATGCATACTGAGAAAGCTGGTAATTTCAACGTTTTGAGACAAATAGTACTTTACTAAAAAACCCAGCTCCTAAAAGCTGGCAAATCGTACTAAAGTAAATTAATATATACAGATATTTGTTGGAAATTCTTACTTTGTACCTACAGCAACAAATATATTTTTTATCAAGGCGATTCTAGGTGTTACATGTCCATCATCCTATGTGTTCACATGTTTCTTTATTTCTACTTATGGTGTATCTGTGTCTGTTTGTTTTTTCGGGATGGTGGGTGGTTGGGGTCAAATACCCCAATTATCTGAAGGGCACCAAATTTTCATGGTCTTTTGACAAGTTGTTTTTTCAATGCTCTGTTATAGAGGGTACCTGGAATATTGTTTTGCTTCTTATGCAGAACTATCCATATTTACAAAATCTTTTCTGCTTCATTGTTGAATTCAAATTTATGAGACACTGGCTAGTCTGTGTAGCAATCACTTTACCTATTTGTCTCGCTGCATGTTTGGTTGAAGTTCACAGATATTATTGGTTTCAGTTGCTTTCCAATGTGTCTTTTCTGAATTTCACTTACTTCAGGTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCGTTATCTGTTTGCACGTTGCCAGGACAGGTGACTTCAGACCGTTTAGGCCCAGGGAAGATGGAGCTTGGTCTTGGAATAGTAAGTTCCTTCTTAGGCACAAGGGTACTAATGATTGATATTAGCAATGGGGAAGAAGTTGATAAGTCAAGCTTTACTAGATGAAACATGTCATATTACATTCATGTTTTGGAGACATGATAATCCTGTAATTTACCTTGGGGGTGCTGTGAATGCCGTTCATATCATTTCTGGTTATAGCATTTCTACACTCGATGTTGCTTTTCAATAGTAGAATTGGTTGGGTCTCTTCAAATGTGTCTGTGCTACAGTTGGAACTTCCAAGGTCTAAGTGCTGGCAGACTTCTTAGAATTCTGTAATCTTCAGTTATGTATTATCAAATTGTTTGCACTGGTTTCTCCTTTTTTTCAGCATGGGGAACCAGGAGCTGCTGTAGCTGACCTTCAACCAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTTGTCACCGGTATGTGAATACTTGGAGTCTGAAAGTTTGACTTGATATGAACTAGTACTTGATGCACTAAAAGTTTTCTGATAATTGTTTGAATGATCACTATGAATTGGATGAAGTGGAATTTACTTTTTGATGAGATAAACTTTTGATCTTTCTTTTGGTACTAAAACAAATGAGGAAAGTGACTCCAAAAAACTATAACCATGTAGATCTAAGGATTTAATCTTTGCCATTCGTGTACACTATAAAGCTACAAGGACTAATGATGAGGATTTTAATATGTTTTTATTACATTTTTGTGAAAGAAGATAGGCTGGGCAAAATATTCTGTTTGGGGTCCCAACATCTTGTAAGAATGAAGAGCAAAGTAGAAACAATTTTTGGAGTTGAACTATTAACTGAAACACATAAAAAATAGTCATTCATTAGTTATGTTAATTTAGTAGAGGGAAAAAAAAGAAATAAAGAAAAAAGGCACTAGCTTTAGTTTGGGAGTTTTTATGCAATCAGTCTATTCTTCTCACCTTCTTTCAGTGAGGTTGTGGAGGATATTCACATGACAATTTTTCTTGTGCATTAACCCCCCCCTCAAAAAAAAAGAAAAGAAAAAAGAGAAGTTGGAATTCCTCCTAGCTTACTCCATCGAATTTTCATGGGCCAGAGGGGTCTAGTTTTAAAAGAGGAAGTCTTTCAGGAAGAGGGACTACGAATGCACAACAACAACCTTGGTCTCATTCATCTTAGTTAAGAACACTTATTCTGCAGAAGGAAATTTCACTGTCACTGAATGTCTTTGTAGGAGACCAACTACGTTCCAATCACGCGTGGGAGTAGAGTCGTGCTCCTGATTAATGGGTAAGTTTCAGCTCTACTCGTCTATATATGCCTCTGTCATCACATCCCTCCAAGTATTGTGGCGGTTTAGTTATCCCGTTCTGTTCTCATTCTCTTTTGCCTTTCTGATCCTTTCCATTTCTCGCATTTTTGGTTGACGGAGCAGATTCGGTTTTATAGTATATAGAAAGATCTCCTGGTAGCATGCTTACCCCGTATCTGACCTTGGCCCCTATATAGTTTTCCTTGAATGTTCCATTTGGTTTTTGTGGAATACTTCAATTAGACTCCTCAAATTTCAAATGAAATCATTTTTCACATTTTTCTGTGTACTTTTTCTTTTTACTCCCCTACTGCAGATTAGGAGCAACACCATTGATGGAATTGATGATTATAGCTGGCAAGGCTGTCCCAGAATTGCAGCTTGAACATGGTCTAGCTGTTGATAGAGTCTATACAGGGTCATTTATGACGTCACTTGATATGGCAGGTATATCAGGTTATAAGTCCTTTTTCTTCGCCCAACAACAGTCATTTTCTTACTATAGTTATATGCAGGCTTTTCAATTTCGGTAATGAAGGCTGATCAAGCAATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTTGGTGCTGAAGGTCAGTTTCTATTTGTCTATTATTACGTTGGACTATGTATGGCCATATTGGTGGCTCATGCTAGTTTTGACTTCTGGTTCCTTTTACTATTTTTATTAGGAAAAGCTCCCCCTCATTTATATTTCCCTTAGTAAAAGAACTAGAGCAGAAAGAAAAGTTCATATTAGGTAATTCAGTAGTATTCTCTTATCTGTGGGTCATATAACTAGCGCATAATCTGTGTGATTTTGTAGCAATTAACCCTGTATTAGATAATAGATCTACTTTGCTTACTGGAAATTAAAAATTTCAGGCAACCGGCCTCCTGCAAAGATTCCTGTTCCACTTCCGCCATCACATTCTATCAAGATTGAAAAGGTATGCCAAATTTAATTTGAAAGCACTGATAAACACATTGCAAATAAGGGTGATGTCGCTGATACTTGATAAATATTCGATTGAACAGTCGCTGTCCCAGACATCAATTGTAGCTACTGCTTTCAATTTTCTTTTTTTGATTTTTTAGGTTGAGAGAGACAGCATATCATATTATAATTCTGTTGCAGATCAATAATATTTACTATTTTACTGTATTTCTTCTTTTATTAGACATTGAGTCGGCCTGAAAAACTGAGCCCTCAGGGTCATATCCTTGAGACAGCTATTGAAGCAGCAGCTACTGAAGTTGTAAATCTCAGGGATAATTTGAATGAGTGGGACAATAAAGTTGGTGATGGCGATTGTGGTTCAACTGTAGGTCTTTGGATAGCCCATTTGTTTCCCTTCATTTGTTCCCCATGTTATCTGCATTTAATAAGCTCCTTTGTGAAACTGCAGATGTTCAGAGGTGCTGTGGCTATACTTGAAGACATGAAGAAGTAGTGAGTCTTCTTTCCTAGATTCTTTCCTCATATAATGTCTCCAAGAAAGTTAAAGGGAGGCTGATTAGTCTTCCCAAGATTCTGCCTCTCCTTTTTATCTCTGGTAAGAGCGCCCCCAAGGCCTAGCTCGAGTGGCAAAGGGTGGAGGACTTATGGCTTACGTCGCAGGTTCAAGCCCCACACCATGCAAAGCGAAGCCCAGTATTTAAGTGGAGAAGGGTAGAGAGGGCCCATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGAGCGGGTCACAGACGGATTTCTCAGTTGTCAAAAAAAATAATTATTCACTAACAGACAATATGTGTCTTTGTTTGTTTTCCCTCTTTCCTGCTTGCACCGTCTGTGGTGTGGTTATTTCAGAGTGTTCTGCTTGTACACATCTGCTTGCAGCATTGTTTGCTCTTGGGAAATCCCTGTAATTAATTGTTGGGTATAGATAGGTTTCATTTTTTAAACAGGGGAGGTAGAAGTCTCTTCATGAGTTAAAACACGAGGTTTTGTGAAAGACAGCTTGAGACGGCAGAAGTTGTGTTTAATCTCCTTTGTAGTCAACTTAATGATATGATATGAAAAATCAGCTGCTATTGCATGTTTTCATTTAGTTATTTTTATGTTTCTTTATTTATTTCCTTTTATCATCTGTGTCATTTTTTGTTCATTTCCCCTCTTTCTTCACTTTTCAAGGTTATGTAAACCAACCTATAGGTTTTTTGCGAGTTTGCTGTATGAATTTTAGATAGTTGCGTAACAACTGCGTGAATTGAGATTATATATTTCCATCTTCGAGAAAATTTACTCCTGCTTTCTGATTCTTCTTTCTTGCAGCTATCCGTTGAATGACCCTGCAGAAACAGTCAATGAAATTGGAGCCTCCATTGGAAGAGTAATGGGGGGAACTAGCGGTATCTTGTAATGCACTTTCCATGTCTCATTAACTTTACCAGTTCTTTCTTTCAACCAGGATTTTCCTTAAATTATCAATGCCACTAAACATCTATCTTTATAACAGATACAGTATATTCTGTAAGGCAGCATATGCGAAGTTGAAAGAAAATGCTGAGTCGGTTGTCACAGCTATTCACTGTAAGTTAACTCCTTGGCAGTAAAGTTTAGACTTGATGTTTGTTGCTTCCAACTATTTCTTTGTGTACCAATCTACTCTTTTGATTCAGGGGCTGATGCACTTGAAGCTGCTATCGCTGCTGTTAGTAAATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAGGTCAATATAATGCTTTTTCATGATACATCATTTGCAATTTTTTCCTACATATACCTTATTCATCAAGAAATTTTACGCATTGGGATCAGAGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAGGTATTGTCGCTATATTTACTTCTAATGCGTTGAAAGGAAAATAGCGCACACGGTGTTGCAATGGTTTATTTCCACAAATGTTACATAGTTATGTGGTTAGCTCTTAAAAGGTTCATAAATATTTGACAACACCAGAAAAATATTGTAGCTTAAGCATCTTTAAAATATGGAGCAACTGTAAAGTACCCTTATGCTTGTCTTTCTTCTTCAGGGACTGTTACACCTTTAAGCATCTTCACCCTATTAGACTGAAGTGATAATCCAGGATGAAAATGTGTTTGTATCCTTTTCCTCTTTGGCTCAAATCAACAAGGAATCAAAGTTGAGATATGATTAACGTAGTGATTCAACAAATTTATCTGGCTTTATAGGTCTCACATAAGGGAAGATATCTGTAGTTTATTAGGATTTATTACCAAATCAATAGAAAATTTTGGTCACACCCATTTTTCCAGATTTAGATCAGTACCTGGTTTTACTTCAAATGAAATGACAAGTCTGAACTCTTAGAATATGTCTTGACGGAAGGGTTGTTAAATGACACCTCTAGAAGGTTTAAAGTAAGTTCAAGATGTGATTGATATTTAAAACTTATGATTGAAGTCTTTGTTCTAATGGGTAAAAATTCATATGAATCTGCGCTTTCTTGAAAGATAGCTTGGTAATTACCGGTCTTCTGACATAAATAATAGATTTCAATTTTTCATGGAGATTTGGACTAGGCTGCTTCAGGAATTCTCTATTGATGTTTTTATTGGAAGCTTTTGCCAAGAATTTTGATAAGCAATTTTCTGTACATGTCTTCCTTTGAATGGAGGCGATGCTCATTTTATTTTGAGTGCAATTGCGAAGCTTATAACAGAAAAATTGTAGATCTGTCTTGATCCATCTTTAAATCAGTGTTATCTGGCTGCCAGTTTCTTATTTCAGTAAGAGTTATAATCAGTCTGTTTTCTAGGCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTACTTTTAGC</genome_strand>
        <mrna_strand>CCTCTATAAATCTTTTTTTTCCCCTTCTCTCTCTTTTTGTGTTTGTTCAGACTTCGGACAAAGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAG.........................................................................................CACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAG..............................................................................................................GTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCG.................................................................................................GGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAG...........................................................................................................................................................................................................................................................AACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAG...............................................................................................................................................ATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCGTTATCTGTTTGCACGTCGCCAGGACAGGTGACTTCAGACCGTTTAGGCCCAGGGAAGATGGAGCTTGGTCTTGGAATA................................................................................................................................................................................................................................................................................................................................................................CATGGGGAACCAGGAGCTGCTGTAGCTGACCTTCAACCAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTTGTCACCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACCAACTACGTTCCAATCACGCGTGGGAGTAGAGTCGTGCTCCTGATTAATGG..................................................................................................................................................................................................................................................................................................................................................ATTAGGAGCAACACCATTGATGGAATTGATGATTATAGCTGGCAAGGCTGTCCCAGAATTGCAGCTTGAACATGGTCTAGCTGTTGATAGAGTCTATACAGGGTCATTTATGACGTCACTTGATATGGCAG....................................................................GCTTTTCAATTTCGGTAATGAAGGCTGATCAAGCAATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTTGGTGCTGAAG....................................................................................................................................................................................................................................................................................................GCAACCGGCCTCCTGCAAAGATTCCTGTTCCACTTCCGCCATCACATTCTATCAAGATTGAAAAG.......................................................................................................................................................................................................................................ACATTGAGTCGGCCTGAAAAACTGAGCCCTCAGGGTCATATCCTTGAGACAGCTATTGAAGCAGCAGCTACTGAAGTTGTAAATCTCAGGGATAATTTGAATGAGTGGGACAATAAAGTTGGTGATGGCGATTGTGGTTCAACT....................................................................................ATGTTCAGAGGTGCTGTGGCTATACTTGAAGACATGAAGAAGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCCGTTGAATGACCCTGCAGAAACAGTCAATGAAATTGGAGCCTCCATTGGAAGAGTAATGGGGGGAACTAGCGGTATCTT....................................................................................................ATACAGTATATTCTGTAAGGCAGCATATGCGAAGTTGAAAGAAAATGCTGAGTCGGTTGTCACAGCTATTCACT.........................................................................................GGGCTGATGCACTTGAAGCTGCTATCGCTGCTGTTAGTAAATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAG.........................................................................................AGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTACTTTTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745780" ref_strand="+" ref_description="SGN-E745780 [GI|47105090]">
      <seq>ggtgtttgttcagacttcggacaaagcattcaacaattgaagtctactctccccacacctacaaagccctcagcacaattatccgatggattttcagagcaaaaaactcatcaacgaccccaatgatgttgtgacagagttcattgagggacttattgagaattatccagggttgcagtatctggatggtttcccagaggttaaggtcgtcttgcgtgctgatgtttctggtgcaaaatatgacaaagttgccatcatatcaggtggtggaagtggccatgagcctgctcatgctggatttgttggagaagggatgctgactgcagctatctgtggggacgtttttgcctctccaaatgttgattcaattcttgcgggcatacgagctgtcacaggtcccatggggtgccttcttattgtcaagaactatactggtgatcgactgaattttggtttggctgctgaacaagcaaaatctgaaggttataaagtcgagatggtaatcgtcggtgatgactgtgctttaccacctccaagaggcattgctggccgaagagggttggcagggacgcttcttgttcacaaggttgccggagctgcagcagcttgtggtcttccccttgctgacgttgcagctgaagccaaacgtgcatcagaaatggttgggacaatgggcgttgcgttatctgtttgcacgttgccaggacaggtgacttcagaccgtttaggcccagggaagatggagcttggtcttggaatacatggggaaccaggagctgctgtagctgaccttcaaccagtagatgtggtggtttctcatgttctgaaggagattttgtcaccggagaccaactacgttccaatcacgcgtgggagtagagtcgtgctcctgattaatggattaggagcaacaccattgatggaattgatgattatagctggcaaggctgtcccagaattgcagcttgaacatggtctagctgttgatagagtctatacagggtcatttatgacgtcacttgatatggcaggcttttcaatttcggtaatgaaggctgatcaagcaattttagatcgtttagatgctccaactaaagctccaaattggcctgttggtgctgaaggcaaccggcctcctgcaaagattcctgttccacttccgccatcacattctatcaagattgaaaagacattgagtcggcctgaaaaactgagccctcagggtcatatccttgagacagctattgaagcagcagctactgaagttgtaaatctcagggataatttgaatgagtgggacaataaagttggtgatggcgattgtggttcaactatgttcagaggtgctgtggctatacttgaagacatgaagaagtactatccgttgaatgaccctgcagaaacagtcaatgaaattggagcctccattggaagagtaatggggggaactagcggtatcttatacagtatattctgtaaggcagcatatgcgaagttgaaagaaaatgctgagtcggttgtcacagctattcactgggctgatgcacttgaagctgctatcgctgctgttagtaaatatggaggagctagtgctggttatcgtacccttttagatgctcttataccagcattgtcagctcttaaagagaggttgaatgctggggacgaccctgcggatgctttcattatttctgctgaggcagcatctgctggagccgagtcaaccaagcacatgcaggcgcaggctggccgttcaacctatgtacccggagatattcttgcatcagttcctgacccaggtgccatggctgcagctgcgtggtacagagcagctgcgttagctgtgaaggagaagtataatacagcataagcatatttaatcggccattcctattacttcctgcaggaatgttttctctttctcgaggaagaaattaacccaacaattttttgctcgtaaaccttatgaggagttagctttccgcttatgcagtcctgcataaagccgagagagtgtagaaaatgtatgttacagtccttttatacagtgttctaagtgagggaaaaaacaaacactgccatgtagaatggtaatctgtgaaggtggttgtaaactttattgtaacaatggattttcttattctgctacttttagcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40633" stop="29606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40334" g_stop="40262" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40261" i_stop="40173" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40172" g_stop="40121" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="125" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40120" i_stop="38589" i_length="1532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38588" g_stop="38515" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="199" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38514" i_stop="38405" i_length="110">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38404" g_stop="38341" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="263" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38340" i_stop="37585" i_length="756">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37584" g_stop="37472" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="376" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37471" i_stop="37375" i_length="97">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37374" g_stop="37327" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="424" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37326" i_stop="37076" i_length="251">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="37075" g_stop="37004" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="496" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="37003" i_stop="36861" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="36860" g_stop="36771" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="586" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="36770" i_stop="35725" i_length="1046">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="35724" g_stop="35551" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="760" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="35550" i_stop="35199" i_length="352">
            <donor d_prob="0.210" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="35198" g_stop="35115" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="844" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="35114" i_stop="34325" i_length="790">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.709" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="34324" g_stop="34269" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="845" r_stop="900" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="34268" i_stop="33931" i_length="338">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="33930" g_stop="33800" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="901" r_stop="1031" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="33799" i_stop="33732" i_length="68">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="33731" g_stop="33639" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1032" r_stop="1124" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="33638" i_stop="33347" i_length="292">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="33346" g_stop="33282" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1125" r_stop="1189" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="33281" i_stop="33051" i_length="231">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="33050" g_stop="32907" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1190" r_stop="1333" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="32906" i_stop="32823" i_length="84">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="32822" g_stop="32779" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1334" r_stop="1377" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="32778" i_stop="31922" i_length="857">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="31921" g_stop="31838" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1378" r_stop="1461" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="17">
          <gDNA_intron_boundary i_start="31837" i_stop="31738" i_length="100">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="18">
          <gDNA_exon_boundary g_start="31737" g_stop="31664" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1462" r_stop="1535" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="18">
          <gDNA_intron_boundary i_start="31663" i_stop="31575" i_length="89">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="19">
          <gDNA_exon_boundary g_start="31574" g_stop="31462" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1536" r_stop="1648" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="19">
          <gDNA_intron_boundary i_start="31461" i_stop="31373" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="20">
          <gDNA_exon_boundary g_start="31372" g_stop="31277" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1649" r_stop="1744" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="20">
          <gDNA_intron_boundary i_start="31276" i_stop="30319" i_length="958">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="21">
          <gDNA_exon_boundary g_start="30318" g_stop="29907" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1745" r_stop="2156" r_length="412" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2157" polyA_stop="2172"/>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E745780" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2156</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40334" e_stop="40262"/>
          <exon e_start="40172" e_stop="40121"/>
          <exon e_start="38588" e_stop="38515"/>
          <exon e_start="38404" e_stop="38341"/>
          <exon e_start="37584" e_stop="37472"/>
          <exon e_start="37374" e_stop="37327"/>
          <exon e_start="37075" e_stop="37004"/>
          <exon e_start="36860" e_stop="36771"/>
          <exon e_start="35724" e_stop="35551"/>
          <exon e_start="35198" e_stop="35115"/>
          <exon e_start="34324" e_stop="34269"/>
          <exon e_start="33930" e_stop="33800"/>
          <exon e_start="33731" e_stop="33639"/>
          <exon e_start="33346" e_stop="33282"/>
          <exon e_start="33050" e_stop="32907"/>
          <exon e_start="32822" e_stop="32779"/>
          <exon e_start="31921" e_stop="31838"/>
          <exon e_start="31737" e_stop="31664"/>
          <exon e_start="31574" e_stop="31462"/>
          <exon e_start="31372" e_stop="31277"/>
          <exon e_start="30318" e_stop="29907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTTTGTTCAGACTTCGGACAAAGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAGGTTTTTCTTTCTTCTCAAAGAAGACACTTCACTTTTTTTTCTCTTTCTCTTTGAATTTTTTCTAATTTGTATCGCCTCTGTAAATGCAGCACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATGGTAACTGAAACCCCTAAAAATTGCTCTTATCGTTTTTACTTTGTTCTTCTTTCTCAATTGGATTGTTTATTGGATGTTGATGTGACAGATTGTTTATGTGCATTGCTTGTCATGTTCGTTGAATTGAAAGATGAGATTTTGTATAATTTGAGAAAGGGATTTTTTTAATCAATCGAGTTGTTTGAGTATATACGATCCTTTGTGGAAGTAGAAAAGAAAAAGAATTGACATTAGTGTTTTGTCTTGTTGGAAATGAAGGGAAGTCAAATATAGGAATAAAAAAGATTTAGTTTTAGGTATTAGGTAGAACTACTTATTTGCTATGCTTATCATACCAAACCTAAAGTAAGAGCATATGTGTAGAAAGGAGAAAAGTGTTTTGTTTTGATAACTGTGTTGTCCGGTTTCCGGTTTCCATTGTCTAGGACAACTTACCCTCAGTTAGACTAATTACACGGGGTACTAGCTAATGCGTAATAACACATATATCGATTAACTCTGTCCACCGCGGTATGGATAGAGGGGAAGAAATCGCCTAGTGCTTTTTGCCTAGGGATTTGAACATGAGAATTCATGCTTCTCAATTCACTTCGTCAACCACTAGGTCACATCTTTGGACGCGCCTTTTCGCTTCTAGAAATCTAGAACATTTATGGACCAATGTAAAAAAAAGAAATTCAACATTTTGACAGTAGCGAGGAGAAGGAAAGGAGTTGAAAGGGGCATGTATCCTTTTTTTTTTCTAAAGAAAGAGGGCTACTTCACGAGTCGCTTCTAATAATTGAAAAGGTTCACAACTAGTTCAGTCTATAGTGACAAAGGGAATGTTTCTGCCGGAGCCATGGAAAAAAGTATTCACTCCTGCTTACAGCACCTTCTTCACTCGTCTCGCTACTTCAGAACTGTTCAGCGGACACGTGGAGTCAAATGCAAACCATTTGTGGGAATTTGAGAACTTTCTCTTTTATCTCTTTCTCCTTGCTGGAAGGCTGTTTATGAGCGGAAGGGAAGTAGAGGTAGAGGGTCCGAAGGAGAGAGGAGATCTCTGCTATTATCGTTAATTAGGTGTGCCTCCAGATCCGAATGTATACCCTAGGCCAAGGGGTGCGATCACTTACAATGATCGGAGGCAGGTCAGGGGCTGGCGGATGCCCCCAGCTTCTTAAGTTTGGGAATTCCAAATGTTCTGGCACTTAATTTACATTAAAAAATGAATTAGTGTGGTAATGAAATGGGCCTGAATATGAAAGACTGGATGTATAAGGTTCACGTAGCTGATCAGAACTAATTTGGAATTGAGATCTAGTTGAATGACATCATATTCTGTTTCAATAGAAATGTATGTACATTAATATTTTCCTTATCAAAATTAATAAAAGAAATGTATGTACACTTTTGTGTGTCATATGTATGTGGCAGAATTAAATGTTATAGAGCTTTGTGAAGCTTATAATAGGTACTGTAGGTCTTATGTTATGTATGTAAATCCTAATAATTATCTGCTGTAGAGACTGAAGTGCAATGATTTGCAGATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAGGTGATCTGCCTTCAAATACTTTGTTGACTTTTTTGTTTACATGTCTCTCTACTAAGATAATATGTGTTGCAAGTTGGTTGTAACATGTTATCTTCTGTGCTGAACGCCAGGTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAGGTTTCTTCAATTTGAACTGTGTTTCATGTCTATATTTCAACACTGGAGTTTGCGTTTCAGTGGTAGCAATAATAATTTGGCATTCAGAGTGTCATACACAAGTTAGAAAAAGATCAAGCTTGACAAACTAATCAATCTGTATAATAGTGAAACTGGTTCTTATAATCAGTTAATACTATAGGTCTTGTATGCATTCCTTGCTCACCTCCTCTGAAAGATAATATCAGTTGCGTATGAGATTCTGCTGCAGTTTTGTGTTTAAAACTAAATACAGTTTTCAGTAGTTCCTTTATATGCAATGACTAATCATTTTCTGTTTCATGGGGTGATAATTTTATCAATGTGGTTCAGATCTTCCCATAAAGAAGTGGTATAGAACGTAAAAGAAATTGGTTCCCTACAAATGACTCCTAAACATCTAACACTAACATAAACCTCACGGGTGCACCAAAACTTTTCTAGAAATAAAAGGCATGCTCCGAATGCACAAAATTGTTTTCCACTCCTTCAAGGCTGTCTTGTATATTTCCCATAAGTACCCACATATTAGCCAAAGGAGCGGCATCCCATCCTCTGCATCTTCTTTTCCTTAGCTGGACAGAACAACCTTGAACTCTAGCTGCCATTGACCACTAATTATATACGAATTTACGACTTAAAAGTGTTCTTGAGAATCTTTAACTTGGGATGTATCTTTGGAACTTCAGTGAAGTGAAGTGCAGTTTAACCTGGTATCTTGGTACTTCTATAACTTAGGTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCGGTATGATATGCTATTAAGTATTACCCCCTCTGTTAGCATGTAGACATATATAAATTCTTCCCTATTTATGTCTGTCTACTGACCTGATTCAATTTAGGGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAGGTACCACTTATCCTAGCTGTTAATTTTATTCCTACCCTTGTCTAGTTTTACCAGTTAGGTTTAATGGGGTTGACAGTGCACATAAAGGATCACCAATTATCATCCTACTTTTGGATATTTACTGTTGAAAGAAAGATGCGGCGGATTGCTGTTACATTCTTCATTTATGGTTAATAATTTATAACTCATAATGAAGTCATTTCATGATTTGCTTACATTTCATGATTACAATGCGCTTTGGTTCTTTACAGAACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAGGTATCATTGTGATATCAGTATAATTAATTTGTTGCTATTTATTATTTTTAATATGATGACAATGATTGCAGTAGCCAAGTAATCATCAAAAACTGGCAGAAAGTACTCACTGATATACATGCATATATTTTTCTTTATCCCAGATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAGGTTCACAATCTCTATCTGCGTGCATGTCTTTTAGATTTCATTTGAATGGATATATTTGACTTCAGTCATCACTGATTGAAGCTTTTACAATTTTCCTCTCAATTCAAAACAAAATTTTTCCTTTTGATACCACCTACACAATATATTGGAGTTCTATGTGTTTTGTGTAATATATCTGCTTCTCTTTCCTTTAGTTCAAAGTGCATTCACATATTTTTATGGGGCCTCCTATTAAATCCATTGAGTTTCATATTAGTGTGGCACAATGTTTGATAGAACAATATAATTCATTTTACTGTGCCACATTACATAATGTTGTTCCAAGGTCACAAGAAACAATAATATTAATTATCTCTTTGGTGTTCTTTACTTTTCAATGATACATAAGAGAACTATTAGTTACCAGTTTAAAAAAAAAATGTAAGAGAACTATCTCTGATCATTTGAGTGACAACATTTTCAGCTATTTAAAATGCATACTGAGAAAGCTGGTAATTTCAACGTTTTGAGACAAATAGTACTTTACTAAAAAACCCAGCTCCTAAAAGCTGGCAAATCGTACTAAAGTAAATTAATATATACAGATATTTGTTGGAAATTCTTACTTTGTACCTACAGCAACAAATATATTTTTTATCAAGGCGATTCTAGGTGTTACATGTCCATCATCCTATGTGTTCACATGTTTCTTTATTTCTACTTATGGTGTATCTGTGTCTGTTTGTTTTTTCGGGATGGTGGGTGGTTGGGGTCAAATACCCCAATTATCTGAAGGGCACCAAATTTTCATGGTCTTTTGACAAGTTGTTTTTTCAATGCTCTGTTATAGAGGGTACCTGGAATATTGTTTTGCTTCTTATGCAGAACTATCCATATTTACAAAATCTTTTCTGCTTCATTGTTGAATTCAAATTTATGAGACACTGGCTAGTCTGTGTAGCAATCACTTTACCTATTTGTCTCGCTGCATGTTTGGTTGAAGTTCACAGATATTATTGGTTTCAGTTGCTTTCCAATGTGTCTTTTCTGAATTTCACTTACTTCAGGTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCGTTATCTGTTTGCACGTTGCCAGGACAGGTGACTTCAGACCGTTTAGGCCCAGGGAAGATGGAGCTTGGTCTTGGAATAGTAAGTTCCTTCTTAGGCACAAGGGTACTAATGATTGATATTAGCAATGGGGAAGAAGTTGATAAGTCAAGCTTTACTAGATGAAACATGTCATATTACATTCATGTTTTGGAGACATGATAATCCTGTAATTTACCTTGGGGGTGCTGTGAATGCCGTTCATATCATTTCTGGTTATAGCATTTCTACACTCGATGTTGCTTTTCAATAGTAGAATTGGTTGGGTCTCTTCAAATGTGTCTGTGCTACAGTTGGAACTTCCAAGGTCTAAGTGCTGGCAGACTTCTTAGAATTCTGTAATCTTCAGTTATGTATTATCAAATTGTTTGCACTGGTTTCTCCTTTTTTTCAGCATGGGGAACCAGGAGCTGCTGTAGCTGACCTTCAACCAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTTGTCACCGGTATGTGAATACTTGGAGTCTGAAAGTTTGACTTGATATGAACTAGTACTTGATGCACTAAAAGTTTTCTGATAATTGTTTGAATGATCACTATGAATTGGATGAAGTGGAATTTACTTTTTGATGAGATAAACTTTTGATCTTTCTTTTGGTACTAAAACAAATGAGGAAAGTGACTCCAAAAAACTATAACCATGTAGATCTAAGGATTTAATCTTTGCCATTCGTGTACACTATAAAGCTACAAGGACTAATGATGAGGATTTTAATATGTTTTTATTACATTTTTGTGAAAGAAGATAGGCTGGGCAAAATATTCTGTTTGGGGTCCCAACATCTTGTAAGAATGAAGAGCAAAGTAGAAACAATTTTTGGAGTTGAACTATTAACTGAAACACATAAAAAATAGTCATTCATTAGTTATGTTAATTTAGTAGAGGGAAAAAAAAGAAATAAAGAAAAAAGGCACTAGCTTTAGTTTGGGAGTTTTTATGCAATCAGTCTATTCTTCTCACCTTCTTTCAGTGAGGTTGTGGAGGATATTCACATGACAATTTTTCTTGTGCATTAACCCCCCCCTCAAAAAAAAAGAAAAGAAAAAAGAGAAGTTGGAATTCCTCCTAGCTTACTCCATCGAATTTTCATGGGCCAGAGGGGTCTAGTTTTAAAAGAGGAAGTCTTTCAGGAAGAGGGACTACGAATGCACAACAACAACCTTGGTCTCATTCATCTTAGTTAAGAACACTTATTCTGCAGAAGGAAATTTCACTGTCACTGAATGTCTTTGTAGGAGACCAACTACGTTCCAATCACGCGTGGGAGTAGAGTCGTGCTCCTGATTAATGGGTAAGTTTCAGCTCTACTCGTCTATATATGCCTCTGTCATCACATCCCTCCAAGTATTGTGGCGGTTTAGTTATCCCGTTCTGTTCTCATTCTCTTTTGCCTTTCTGATCCTTTCCATTTCTCGCATTTTTGGTTGACGGAGCAGATTCGGTTTTATAGTATATAGAAAGATCTCCTGGTAGCATGCTTACCCCGTATCTGACCTTGGCCCCTATATAGTTTTCCTTGAATGTTCCATTTGGTTTTTGTGGAATACTTCAATTAGACTCCTCAAATTTCAAATGAAATCATTTTTCACATTTTTCTGTGTACTTTTTCTTTTTACTCCCCTACTGCAGATTAGGAGCAACACCATTGATGGAATTGATGATTATAGCTGGCAAGGCTGTCCCAGAATTGCAGCTTGAACATGGTCTAGCTGTTGATAGAGTCTATACAGGGTCATTTATGACGTCACTTGATATGGCAGGTATATCAGGTTATAAGTCCTTTTTCTTCGCCCAACAACAGTCATTTTCTTACTATAGTTATATGCAGGCTTTTCAATTTCGGTAATGAAGGCTGATCAAGCAATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTTGGTGCTGAAGGTCAGTTTCTATTTGTCTATTATTACGTTGGACTATGTATGGCCATATTGGTGGCTCATGCTAGTTTTGACTTCTGGTTCCTTTTACTATTTTTATTAGGAAAAGCTCCCCCTCATTTATATTTCCCTTAGTAAAAGAACTAGAGCAGAAAGAAAAGTTCATATTAGGTAATTCAGTAGTATTCTCTTATCTGTGGGTCATATAACTAGCGCATAATCTGTGTGATTTTGTAGCAATTAACCCTGTATTAGATAATAGATCTACTTTGCTTACTGGAAATTAAAAATTTCAGGCAACCGGCCTCCTGCAAAGATTCCTGTTCCACTTCCGCCATCACATTCTATCAAGATTGAAAAGGTATGCCAAATTTAATTTGAAAGCACTGATAAACACATTGCAAATAAGGGTGATGTCGCTGATACTTGATAAATATTCGATTGAACAGTCGCTGTCCCAGACATCAATTGTAGCTACTGCTTTCAATTTTCTTTTTTTGATTTTTTAGGTTGAGAGAGACAGCATATCATATTATAATTCTGTTGCAGATCAATAATATTTACTATTTTACTGTATTTCTTCTTTTATTAGACATTGAGTCGGCCTGAAAAACTGAGCCCTCAGGGTCATATCCTTGAGACAGCTATTGAAGCAGCAGCTACTGAAGTTGTAAATCTCAGGGATAATTTGAATGAGTGGGACAATAAAGTTGGTGATGGCGATTGTGGTTCAACTGTAGGTCTTTGGATAGCCCATTTGTTTCCCTTCATTTGTTCCCCATGTTATCTGCATTTAATAAGCTCCTTTGTGAAACTGCAGATGTTCAGAGGTGCTGTGGCTATACTTGAAGACATGAAGAAGTAGTGAGTCTTCTTTCCTAGATTCTTTCCTCATATAATGTCTCCAAGAAAGTTAAAGGGAGGCTGATTAGTCTTCCCAAGATTCTGCCTCTCCTTTTTATCTCTGGTAAGAGCGCCCCCAAGGCCTAGCTCGAGTGGCAAAGGGTGGAGGACTTATGGCTTACGTCGCAGGTTCAAGCCCCACACCATGCAAAGCGAAGCCCAGTATTTAAGTGGAGAAGGGTAGAGAGGGCCCATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGAGCGGGTCACAGACGGATTTCTCAGTTGTCAAAAAAAATAATTATTCACTAACAGACAATATGTGTCTTTGTTTGTTTTCCCTCTTTCCTGCTTGCACCGTCTGTGGTGTGGTTATTTCAGAGTGTTCTGCTTGTACACATCTGCTTGCAGCATTGTTTGCTCTTGGGAAATCCCTGTAATTAATTGTTGGGTATAGATAGGTTTCATTTTTTAAACAGGGGAGGTAGAAGTCTCTTCATGAGTTAAAACACGAGGTTTTGTGAAAGACAGCTTGAGACGGCAGAAGTTGTGTTTAATCTCCTTTGTAGTCAACTTAATGATATGATATGAAAAATCAGCTGCTATTGCATGTTTTCATTTAGTTATTTTTATGTTTCTTTATTTATTTCCTTTTATCATCTGTGTCATTTTTTGTTCATTTCCCCTCTTTCTTCACTTTTCAAGGTTATGTAAACCAACCTATAGGTTTTTTGCGAGTTTGCTGTATGAATTTTAGATAGTTGCGTAACAACTGCGTGAATTGAGATTATATATTTCCATCTTCGAGAAAATTTACTCCTGCTTTCTGATTCTTCTTTCTTGCAGCTATCCGTTGAATGACCCTGCAGAAACAGTCAATGAAATTGGAGCCTCCATTGGAAGAGTAATGGGGGGAACTAGCGGTATCTTGTAATGCACTTTCCATGTCTCATTAACTTTACCAGTTCTTTCTTTCAACCAGGATTTTCCTTAAATTATCAATGCCACTAAACATCTATCTTTATAACAGATACAGTATATTCTGTAAGGCAGCATATGCGAAGTTGAAAGAAAATGCTGAGTCGGTTGTCACAGCTATTCACTGTAAGTTAACTCCTTGGCAGTAAAGTTTAGACTTGATGTTTGTTGCTTCCAACTATTTCTTTGTGTACCAATCTACTCTTTTGATTCAGGGGCTGATGCACTTGAAGCTGCTATCGCTGCTGTTAGTAAATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAGGTCAATATAATGCTTTTTCATGATACATCATTTGCAATTTTTTCCTACATATACCTTATTCATCAAGAAATTTTACGCATTGGGATCAGAGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAGGTATTGTCGCTATATTTACTTCTAATGCGTTGAAAGGAAAATAGCGCACACGGTGTTGCAATGGTTTATTTCCACAAATGTTACATAGTTATGTGGTTAGCTCTTAAAAGGTTCATAAATATTTGACAACACCAGAAAAATATTGTAGCTTAAGCATCTTTAAAATATGGAGCAACTGTAAAGTACCCTTATGCTTGTCTTTCTTCTTCAGGGACTGTTACACCTTTAAGCATCTTCACCCTATTAGACTGAAGTGATAATCCAGGATGAAAATGTGTTTGTATCCTTTTCCTCTTTGGCTCAAATCAACAAGGAATCAAAGTTGAGATATGATTAACGTAGTGATTCAACAAATTTATCTGGCTTTATAGGTCTCACATAAGGGAAGATATCTGTAGTTTATTAGGATTTATTACCAAATCAATAGAAAATTTTGGTCACACCCATTTTTCCAGATTTAGATCAGTACCTGGTTTTACTTCAAATGAAATGACAAGTCTGAACTCTTAGAATATGTCTTGACGGAAGGGTTGTTAAATGACACCTCTAGAAGGTTTAAAGTAAGTTCAAGATGTGATTGATATTTAAAACTTATGATTGAAGTCTTTGTTCTAATGGGTAAAAATTCATATGAATCTGCGCTTTCTTGAAAGATAGCTTGGTAATTACCGGTCTTCTGACATAAATAATAGATTTCAATTTTTCATGGAGATTTGGACTAGGCTGCTTCAGGAATTCTCTATTGATGTTTTTATTGGAAGCTTTTGCCAAGAATTTTGATAAGCAATTTTCTGTACATGTCTTCCTTTGAATGGAGGCGATGCTCATTTTATTTTGAGTGCAATTGCGAAGCTTATAACAGAAAAATTGTAGATCTGTCTTGATCCATCTTTAAATCAGTGTTATCTGGCTGCCAGTTTCTTATTTCAGTAAGAGTTATAATCAGTCTGTTTTCTAGGCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTACTTTTAGC</genome_strand>
        <mrna_strand>GGTGTTTGTTCAGACTTCGGACAAAGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAG.........................................................................................CACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAG..............................................................................................................GTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCG.................................................................................................GGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAG...........................................................................................................................................................................................................................................................AACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAG...............................................................................................................................................ATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCGTTATCTGTTTGCACGTTGCCAGGACAGGTGACTTCAGACCGTTTAGGCCCAGGGAAGATGGAGCTTGGTCTTGGAATA................................................................................................................................................................................................................................................................................................................................................................CATGGGGAACCAGGAGCTGCTGTAGCTGACCTTCAACCAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTTGTCACCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACCAACTACGTTCCAATCACGCGTGGGAGTAGAGTCGTGCTCCTGATTAATGG..................................................................................................................................................................................................................................................................................................................................................ATTAGGAGCAACACCATTGATGGAATTGATGATTATAGCTGGCAAGGCTGTCCCAGAATTGCAGCTTGAACATGGTCTAGCTGTTGATAGAGTCTATACAGGGTCATTTATGACGTCACTTGATATGGCAG....................................................................GCTTTTCAATTTCGGTAATGAAGGCTGATCAAGCAATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTTGGTGCTGAAG....................................................................................................................................................................................................................................................................................................GCAACCGGCCTCCTGCAAAGATTCCTGTTCCACTTCCGCCATCACATTCTATCAAGATTGAAAAG.......................................................................................................................................................................................................................................ACATTGAGTCGGCCTGAAAAACTGAGCCCTCAGGGTCATATCCTTGAGACAGCTATTGAAGCAGCAGCTACTGAAGTTGTAAATCTCAGGGATAATTTGAATGAGTGGGACAATAAAGTTGGTGATGGCGATTGTGGTTCAACT....................................................................................ATGTTCAGAGGTGCTGTGGCTATACTTGAAGACATGAAGAAGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCCGTTGAATGACCCTGCAGAAACAGTCAATGAAATTGGAGCCTCCATTGGAAGAGTAATGGGGGGAACTAGCGGTATCTT....................................................................................................ATACAGTATATTCTGTAAGGCAGCATATGCGAAGTTGAAAGAAAATGCTGAGTCGGTTGTCACAGCTATTCACT.........................................................................................GGGCTGATGCACTTGAAGCTGCTATCGCTGCTGTTAGTAAATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAG.........................................................................................AGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTACTTTTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733077" ref_strand="+" ref_description="SGN-E733077 [LB03DF08]">
      <seq>tgaagaagtactatccgttgaatgaccctgcagaaacagtcaatgaaattggagcctccattggaagagtaatggggggaactagcggtatcttatacagtatattctgtaaggcagcatatgcgaagttgaaagaaaatgctgagtcggttgtcacagctattcactgggctgatgcacttgaagctgctatcgctgctgttagtaaatatggaggagctagtgctggttatcgtacccttttagatgctcttataccagcattgtcagctcttaaagagaggttgaatgctggggacgaccctgcggatgctttcattatttctgctgaggcagcatctgctggagccgagtcaaccaagcacatgcaggcgcaggctggccgttcaacctatgtacccggagatattcttgcatcagttcctgacccaggtgccatggctgcagctgcgtggtacagagcagctgcgttagctgtgaaggagaagtataatacagcataagcatatttaatcggccattcctattacttcctgcaggaatgttttctctttctcgaggaagaaattaacccaacaattttttgctcgtaaaccttatgaggagttagctttccgcttatgcagtcctgcataaagccgagagagtgtagaaaatgtatgttacagtccttttatacagtgttctaagtgagggaaaaaacaaacactgccatgtagaatggtaatctgtgaaggtggttgtaaactttattgtaacaatggattttcttattctgctacttttagcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32225" stop="29606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31921" g_stop="31838" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="94" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31837" i_stop="31738" i_length="100">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31737" g_stop="31664" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="168" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31663" i_stop="31575" i_length="89">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31574" g_stop="31462" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="281" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31461" i_stop="31373" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31372" g_stop="31277" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="377" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31276" i_stop="30319" i_length="958">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30318" g_stop="29907" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="789" r_length="412" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="790" polyA_stop="802"/>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E733077" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31921" e_stop="31838"/>
          <exon e_start="31737" e_stop="31664"/>
          <exon e_start="31574" e_stop="31462"/>
          <exon e_start="31372" e_stop="31277"/>
          <exon e_start="30318" e_stop="29907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATCCGTTGAATGACCCTGCAGAAACAGTCAATGAAATTGGAGCCTCCATTGGAAGAGTAATGGGGGGAACTAGCGGTATCTTGTAATGCACTTTCCATGTCTCATTAACTTTACCAGTTCTTTCTTTCAACCAGGATTTTCCTTAAATTATCAATGCCACTAAACATCTATCTTTATAACAGATACAGTATATTCTGTAAGGCAGCATATGCGAAGTTGAAAGAAAATGCTGAGTCGGTTGTCACAGCTATTCACTGTAAGTTAACTCCTTGGCAGTAAAGTTTAGACTTGATGTTTGTTGCTTCCAACTATTTCTTTGTGTACCAATCTACTCTTTTGATTCAGGGGCTGATGCACTTGAAGCTGCTATCGCTGCTGTTAGTAAATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAGGTCAATATAATGCTTTTTCATGATACATCATTTGCAATTTTTTCCTACATATACCTTATTCATCAAGAAATTTTACGCATTGGGATCAGAGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAGGTATTGTCGCTATATTTACTTCTAATGCGTTGAAAGGAAAATAGCGCACACGGTGTTGCAATGGTTTATTTCCACAAATGTTACATAGTTATGTGGTTAGCTCTTAAAAGGTTCATAAATATTTGACAACACCAGAAAAATATTGTAGCTTAAGCATCTTTAAAATATGGAGCAACTGTAAAGTACCCTTATGCTTGTCTTTCTTCTTCAGGGACTGTTACACCTTTAAGCATCTTCACCCTATTAGACTGAAGTGATAATCCAGGATGAAAATGTGTTTGTATCCTTTTCCTCTTTGGCTCAAATCAACAAGGAATCAAAGTTGAGATATGATTAACGTAGTGATTCAACAAATTTATCTGGCTTTATAGGTCTCACATAAGGGAAGATATCTGTAGTTTATTAGGATTTATTACCAAATCAATAGAAAATTTTGGTCACACCCATTTTTCCAGATTTAGATCAGTACCTGGTTTTACTTCAAATGAAATGACAAGTCTGAACTCTTAGAATATGTCTTGACGGAAGGGTTGTTAAATGACACCTCTAGAAGGTTTAAAGTAAGTTCAAGATGTGATTGATATTTAAAACTTATGATTGAAGTCTTTGTTCTAATGGGTAAAAATTCATATGAATCTGCGCTTTCTTGAAAGATAGCTTGGTAATTACCGGTCTTCTGACATAAATAATAGATTTCAATTTTTCATGGAGATTTGGACTAGGCTGCTTCAGGAATTCTCTATTGATGTTTTTATTGGAAGCTTTTGCCAAGAATTTTGATAAGCAATTTTCTGTACATGTCTTCCTTTGAATGGAGGCGATGCTCATTTTATTTTGAGTGCAATTGCGAAGCTTATAACAGAAAAATTGTAGATCTGTCTTGATCCATCTTTAAATCAGTGTTATCTGGCTGCCAGTTTCTTATTTCAGTAAGAGTTATAATCAGTCTGTTTTCTAGGCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTACTTTTAGC</genome_strand>
        <mrna_strand>CTATCCGTTGAATGACCCTGCAGAAACAGTCAATGAAATTGGAGCCTCCATTGGAAGAGTAATGGGGGGAACTAGCGGTATCTT....................................................................................................ATACAGTATATTCTGTAAGGCAGCATATGCGAAGTTGAAAGAAAATGCTGAGTCGGTTGTCACAGCTATTCACT.........................................................................................GGGCTGATGCACTTGAAGCTGCTATCGCTGCTGTTAGTAAATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAG.........................................................................................AGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTACTTTTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552280" ref_strand="+" ref_description="SGN-E552280 [cTSB-3-G24]">
      <seq>atatggaggagctagtgctggttatcgtacccttttagatgctcttataccagcattgtcagctcttaaagagaggttgaatgctggggacgaccctgcggatgctttcattatttctgctgaggcagcatctgctggagccgagtcaaccaagcacatgcaggcgcaggctggccgttcaacctatgtacccggagatattcttgcatcagttcctgacccaggtgccatggctgcagctgcgtggtacagagcagctgcgttagctgtgaaggagaagtataatacagcataagcatatttaatcggccattcctattacttcctgcaggaatgttttctctttctcgaggaagaaattaacccaacaattttttgctcgtaaaccttatgaggagttagctttccgcttatgcagtcctgcataaagccgagagagtgtagaaaatgtatgttacagtccttttatacagtgttctaagtgagggaaaaaacaaacactgccatgtagaatggtaatctgtgaaggtggttgtaaactttattgtaacaatggattttcttattctgctaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31834" stop="29615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31534" g_stop="31462" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31461" i_stop="31373" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31372" g_stop="31277" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="169" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31276" i_stop="30319" i_length="958">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30318" g_stop="29915" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="573" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="574" polyA_stop="600"/>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E552280" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31534" e_stop="31462"/>
          <exon e_start="31372" e_stop="31277"/>
          <exon e_start="30318" e_stop="29915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAGGTCAATATAATGCTTTTTCATGATACATCATTTGCAATTTTTTCCTACATATACCTTATTCATCAAGAAATTTTACGCATTGGGATCAGAGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAGGTATTGTCGCTATATTTACTTCTAATGCGTTGAAAGGAAAATAGCGCACACGGTGTTGCAATGGTTTATTTCCACAAATGTTACATAGTTATGTGGTTAGCTCTTAAAAGGTTCATAAATATTTGACAACACCAGAAAAATATTGTAGCTTAAGCATCTTTAAAATATGGAGCAACTGTAAAGTACCCTTATGCTTGTCTTTCTTCTTCAGGGACTGTTACACCTTTAAGCATCTTCACCCTATTAGACTGAAGTGATAATCCAGGATGAAAATGTGTTTGTATCCTTTTCCTCTTTGGCTCAAATCAACAAGGAATCAAAGTTGAGATATGATTAACGTAGTGATTCAACAAATTTATCTGGCTTTATAGGTCTCACATAAGGGAAGATATCTGTAGTTTATTAGGATTTATTACCAAATCAATAGAAAATTTTGGTCACACCCATTTTTCCAGATTTAGATCAGTACCTGGTTTTACTTCAAATGAAATGACAAGTCTGAACTCTTAGAATATGTCTTGACGGAAGGGTTGTTAAATGACACCTCTAGAAGGTTTAAAGTAAGTTCAAGATGTGATTGATATTTAAAACTTATGATTGAAGTCTTTGTTCTAATGGGTAAAAATTCATATGAATCTGCGCTTTCTTGAAAGATAGCTTGGTAATTACCGGTCTTCTGACATAAATAATAGATTTCAATTTTTCATGGAGATTTGGACTAGGCTGCTTCAGGAATTCTCTATTGATGTTTTTATTGGAAGCTTTTGCCAAGAATTTTGATAAGCAATTTTCTGTACATGTCTTCCTTTGAATGGAGGCGATGCTCATTTTATTTTGAGTGCAATTGCGAAGCTTATAACAGAAAAATTGTAGATCTGTCTTGATCCATCTTTAAATCAGTGTTATCTGGCTGCCAGTTTCTTATTTCAGTAAGAGTTATAATCAGTCTGTTTTCTAGGCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTA</genome_strand>
        <mrna_strand>ATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAG.........................................................................................AGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553283" ref_strand="+" ref_description="SGN-E553283 [cTSB-4-B11]">
      <seq>atatggaggagctagtgctggttatcgtacccttttagatgctcttataccagcattgtcagctcttaaagagaggttgaatgctggggacgaccctgcggatgctttcattatttctgctgaggcagcatctgctggagccgagtcaaccaagcacatgcaggcgcaggctggccgttcaacctatgtacccggagatattcttgcatcagttcctgacccaggtgccatggctgcagctgcgtggtacagagcagctgcgttagctgtgaaggagaagtataatacagcataagcatatttaatcggccattcctattacttcctgcaggaatgttttctctttctcgaggaagaaattaacccaacaattttttgctcgtaaaccttatgaggagttagctttccgcttatgcagtcctgcataaagccgagagagtgtagaaaatgtatgttacagtccttttatacagtgttctaagtgagggaaaaaacaaacactgccatgtagaatggtaatctgtgaaggtggttgtaaactttattgtaacaatggattttcttattctgctaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31834" stop="29615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31534" g_stop="31462" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31461" i_stop="31373" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31372" g_stop="31277" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="169" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31276" i_stop="30319" i_length="958">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30318" g_stop="29915" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="573" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="574" polyA_stop="601"/>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E553283" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31534" e_stop="31462"/>
          <exon e_start="31372" e_stop="31277"/>
          <exon e_start="30318" e_stop="29915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAGGTCAATATAATGCTTTTTCATGATACATCATTTGCAATTTTTTCCTACATATACCTTATTCATCAAGAAATTTTACGCATTGGGATCAGAGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAGGTATTGTCGCTATATTTACTTCTAATGCGTTGAAAGGAAAATAGCGCACACGGTGTTGCAATGGTTTATTTCCACAAATGTTACATAGTTATGTGGTTAGCTCTTAAAAGGTTCATAAATATTTGACAACACCAGAAAAATATTGTAGCTTAAGCATCTTTAAAATATGGAGCAACTGTAAAGTACCCTTATGCTTGTCTTTCTTCTTCAGGGACTGTTACACCTTTAAGCATCTTCACCCTATTAGACTGAAGTGATAATCCAGGATGAAAATGTGTTTGTATCCTTTTCCTCTTTGGCTCAAATCAACAAGGAATCAAAGTTGAGATATGATTAACGTAGTGATTCAACAAATTTATCTGGCTTTATAGGTCTCACATAAGGGAAGATATCTGTAGTTTATTAGGATTTATTACCAAATCAATAGAAAATTTTGGTCACACCCATTTTTCCAGATTTAGATCAGTACCTGGTTTTACTTCAAATGAAATGACAAGTCTGAACTCTTAGAATATGTCTTGACGGAAGGGTTGTTAAATGACACCTCTAGAAGGTTTAAAGTAAGTTCAAGATGTGATTGATATTTAAAACTTATGATTGAAGTCTTTGTTCTAATGGGTAAAAATTCATATGAATCTGCGCTTTCTTGAAAGATAGCTTGGTAATTACCGGTCTTCTGACATAAATAATAGATTTCAATTTTTCATGGAGATTTGGACTAGGCTGCTTCAGGAATTCTCTATTGATGTTTTTATTGGAAGCTTTTGCCAAGAATTTTGATAAGCAATTTTCTGTACATGTCTTCCTTTGAATGGAGGCGATGCTCATTTTATTTTGAGTGCAATTGCGAAGCTTATAACAGAAAAATTGTAGATCTGTCTTGATCCATCTTTAAATCAGTGTTATCTGGCTGCCAGTTTCTTATTTCAGTAAGAGTTATAATCAGTCTGTTTTCTAGGCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTA</genome_strand>
        <mrna_strand>ATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAG.........................................................................................AGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542306" ref_strand="+" ref_description="SGN-E542306 [TUS-63-I19](-)">
      <seq>gcattttagatcgtttagatgctccaactaaagctccaaattggcctgttgtgctgaaggcaaccggcntcntgcaaagattcctgttccacttccgccatcacattctatcaagattgaaaagacattgagtcggcctgaaaaactgagcctcnagggtcatatccttgagacagctattgaagcagcagctactgaagttgtaaatctcagggataatttgaatgagtgggacaataaagttggtgatggcgattgtggttcaactatgttcagaggtgctgtggctatacttgaagacatgaagaagtactatccgttgaatgaccctgcagaaacagtcaatgaaattggagcctccattggaagagtaatggggggaactagcggtatcttatacagtatattctgtaaggcagcatatgcgaagttgaaagaaaatgctgagtcggttgtcacagctattcactgggctgatgcacttgaagctgctatcgctgctgttagtaaatatggaggagctagtgctggttatcgtacccttttagatgctcttataccagcattgtcagctcttaaagagaggttgaatgctggggacgaccctgcggatgctttcattatttctgctgaggcagcatctgctggagccgagtcaaccaagcacatgcaggcgcaggctggccgttcaacctatgtacccggagatattcttgcatcagttcctgacccaggtgccatggctgcagctgcgtggtacagagcagctgcgttagctgtgaaggagaagtataatacagcataagcatatttaatcggccattcctattacttcctgcaggaatgtttctcttctcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33999" stop="29835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33699" g_stop="33639" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33638" i_stop="33347" i_length="292">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33346" g_stop="33282" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="124" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33281" i_stop="33051" i_length="231">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33050" g_stop="32907" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="268" r_length="144" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32906" i_stop="32823" i_length="84">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32822" g_stop="32779" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="312" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32778" i_stop="31922" i_length="857">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31921" g_stop="31838" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="396" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31837" i_stop="31738" i_length="100">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31737" g_stop="31664" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="470" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="31663" i_stop="31575" i_length="89">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31574" g_stop="31462" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="583" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="31461" i_stop="31373" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="31372" g_stop="31277" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="679" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="31276" i_stop="30319" i_length="958">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="30318" g_stop="30127" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="869" r_length="190" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E542306" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33699" e_stop="33639"/>
          <exon e_start="33346" e_stop="33282"/>
          <exon e_start="33050" e_stop="32907"/>
          <exon e_start="32822" e_stop="32779"/>
          <exon e_start="31921" e_stop="31838"/>
          <exon e_start="31737" e_stop="31664"/>
          <exon e_start="31574" e_stop="31462"/>
          <exon e_start="31372" e_stop="31277"/>
          <exon e_start="30318" e_stop="30127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTTGGTGCTGAAGGTCAGTTTCTATTTGTCTATTATTACGTTGGACTATGTATGGCCATATTGGTGGCTCATGCTAGTTTTGACTTCTGGTTCCTTTTACTATTTTTATTAGGAAAAGCTCCCCCTCATTTATATTTCCCTTAGTAAAAGAACTAGAGCAGAAAGAAAAGTTCATATTAGGTAATTCAGTAGTATTCTCTTATCTGTGGGTCATATAACTAGCGCATAATCTGTGTGATTTTGTAGCAATTAACCCTGTATTAGATAATAGATCTACTTTGCTTACTGGAAATTAAAAATTTCAGGCAACCGGCCTCCTGCAAAGATTCCTGTTCCACTTCCGCCATCACATTCTATCAAGATTGAAAAGGTATGCCAAATTTAATTTGAAAGCACTGATAAACACATTGCAAATAAGGGTGATGTCGCTGATACTTGATAAATATTCGATTGAACAGTCGCTGTCCCAGACATCAATTGTAGCTACTGCTTTCAATTTTCTTTTTTTGATTTTTTAGGTTGAGAGAGACAGCATATCATATTATAATTCTGTTGCAGATCAATAATATTTACTATTTTACTGTATTTCTTCTTTTATTAGACATTGAGTCGGCCTGAAAAACTGAGCCCTCAGGGTCATATCCTTGAGACAGCTATTGAAGCAGCAGCTACTGAAGTTGTAAATCTCAGGGATAATTTGAATGAGTGGGACAATAAAGTTGGTGATGGCGATTGTGGTTCAACTGTAGGTCTTTGGATAGCCCATTTGTTTCCCTTCATTTGTTCCCCATGTTATCTGCATTTAATAAGCTCCTTTGTGAAACTGCAGATGTTCAGAGGTGCTGTGGCTATACTTGAAGACATGAAGAAGTAGTGAGTCTTCTTTCCTAGATTCTTTCCTCATATAATGTCTCCAAGAAAGTTAAAGGGAGGCTGATTAGTCTTCCCAAGATTCTGCCTCTCCTTTTTATCTCTGGTAAGAGCGCCCCCAAGGCCTAGCTCGAGTGGCAAAGGGTGGAGGACTTATGGCTTACGTCGCAGGTTCAAGCCCCACACCATGCAAAGCGAAGCCCAGTATTTAAGTGGAGAAGGGTAGAGAGGGCCCATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGAGCGGGTCACAGACGGATTTCTCAGTTGTCAAAAAAAATAATTATTCACTAACAGACAATATGTGTCTTTGTTTGTTTTCCCTCTTTCCTGCTTGCACCGTCTGTGGTGTGGTTATTTCAGAGTGTTCTGCTTGTACACATCTGCTTGCAGCATTGTTTGCTCTTGGGAAATCCCTGTAATTAATTGTTGGGTATAGATAGGTTTCATTTTTTAAACAGGGGAGGTAGAAGTCTCTTCATGAGTTAAAACACGAGGTTTTGTGAAAGACAGCTTGAGACGGCAGAAGTTGTGTTTAATCTCCTTTGTAGTCAACTTAATGATATGATATGAAAAATCAGCTGCTATTGCATGTTTTCATTTAGTTATTTTTATGTTTCTTTATTTATTTCCTTTTATCATCTGTGTCATTTTTTGTTCATTTCCCCTCTTTCTTCACTTTTCAAGGTTATGTAAACCAACCTATAGGTTTTTTGCGAGTTTGCTGTATGAATTTTAGATAGTTGCGTAACAACTGCGTGAATTGAGATTATATATTTCCATCTTCGAGAAAATTTACTCCTGCTTTCTGATTCTTCTTTCTTGCAGCTATCCGTTGAATGACCCTGCAGAAACAGTCAATGAAATTGGAGCCTCCATTGGAAGAGTAATGGGGGGAACTAGCGGTATCTTGTAATGCACTTTCCATGTCTCATTAACTTTACCAGTTCTTTCTTTCAACCAGGATTTTCCTTAAATTATCAATGCCACTAAACATCTATCTTTATAACAGATACAGTATATTCTGTAAGGCAGCATATGCGAAGTTGAAAGAAAATGCTGAGTCGGTTGTCACAGCTATTCACTGTAAGTTAACTCCTTGGCAGTAAAGTTTAGACTTGATGTTTGTTGCTTCCAACTATTTCTTTGTGTACCAATCTACTCTTTTGATTCAGGGGCTGATGCACTTGAAGCTGCTATCGCTGCTGTTAGTAAATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAGGTCAATATAATGCTTTTTCATGATACATCATTTGCAATTTTTTCCTACATATACCTTATTCATCAAGAAATTTTACGCATTGGGATCAGAGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAGGTATTGTCGCTATATTTACTTCTAATGCGTTGAAAGGAAAATAGCGCACACGGTGTTGCAATGGTTTATTTCCACAAATGTTACATAGTTATGTGGTTAGCTCTTAAAAGGTTCATAAATATTTGACAACACCAGAAAAATATTGTAGCTTAAGCATCTTTAAAATATGGAGCAACTGTAAAGTACCCTTATGCTTGTCTTTCTTCTTCAGGGACTGTTACACCTTTAAGCATCTTCACCCTATTAGACTGAAGTGATAATCCAGGATGAAAATGTGTTTGTATCCTTTTCCTCTTTGGCTCAAATCAACAAGGAATCAAAGTTGAGATATGATTAACGTAGTGATTCAACAAATTTATCTGGCTTTATAGGTCTCACATAAGGGAAGATATCTGTAGTTTATTAGGATTTATTACCAAATCAATAGAAAATTTTGGTCACACCCATTTTTCCAGATTTAGATCAGTACCTGGTTTTACTTCAAATGAAATGACAAGTCTGAACTCTTAGAATATGTCTTGACGGAAGGGTTGTTAAATGACACCTCTAGAAGGTTTAAAGTAAGTTCAAGATGTGATTGATATTTAAAACTTATGATTGAAGTCTTTGTTCTAATGGGTAAAAATTCATATGAATCTGCGCTTTCTTGAAAGATAGCTTGGTAATTACCGGTCTTCTGACATAAATAATAGATTTCAATTTTTCATGGAGATTTGGACTAGGCTGCTTCAGGAATTCTCTATTGATGTTTTTATTGGAAGCTTTTGCCAAGAATTTTGATAAGCAATTTTCTGTACATGTCTTCCTTTGAATGGAGGCGATGCTCATTTTATTTTGAGTGCAATTGCGAAGCTTATAACAGAAAAATTGTAGATCTGTCTTGATCCATCTTTAAATCAGTGTTATCTGGCTGCCAGTTTCTTATTTCAGTAAGAGTTATAATCAGTCTGTTTTCTAGGCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATT</genome_strand>
        <mrna_strand>GC-ATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTT-GTGCTGAAG....................................................................................................................................................................................................................................................................................................GCAACCGGCNTCNTGCAAAGATTCCTGTTCCACTTCCGCCATCACATTCTATCAAGATTGAAAAG.......................................................................................................................................................................................................................................ACATTGAGTCGGCCTGAAAAACTGAGCCTCNAGGGTCATATCCTTGAGACAGCTATTGAAGCAGCAGCTACTGAAGTTGTAAATCTCAGGGATAATTTGAATGAGTGGGACAATAAAGTTGGTGATGGCGATTGTGGTTCAACT....................................................................................ATGTTCAGAGGTGCTGTGGCTATACTTGAAGACATGAAGAAGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCCGTTGAATGACCCTGCAGAAACAGTCAATGAAATTGGAGCCTCCATTGGAAGAGTAATGGGGGGAACTAGCGGTATCTT....................................................................................................ATACAGTATATTCTGTAAGGCAGCATATGCGAAGTTGAAAGAAAATGCTGAGTCGGTTGTCACAGCTATTCACT.........................................................................................GGGCTGATGCACTTGAAGCTGCTATCGCTGCTGTTAGTAAATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAG.........................................................................................AGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATG-TTTCTC-TTCTCGAGGGGGGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281582" ref_strand="-" ref_description="SGN-E281582 [cLEL-1-N4]">
      <seq>ggtatcttatacagtatattctgtaaggcagcatatgcgaagttgaaagaaaatgctgagtcggttgtcacagctattcactgggctgatgcacttgaagctgctatcgctgctgttagtaaatatggaggagctagtgctggttatcgtacccttttagatgctcttataccagcattgtcagctcttaaagagaggttgaatgctggggacgaccctgcggatgctttcattatttctgctgaggcagcatctgctggagccgagtcaaccaagcacatgcaggcgcaggctggccgttcaacctatgtacccggagatattcttgcatcagttcctgacccaggtgccatggctgcagctgcgtggtacagagcagctgcgttagctgtgaaggagaagtataatacagcataagcatatttaatcggccattcctattacttcctgcaggaatgttttctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32043" stop="29843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31845" g_stop="31838" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31837" i_stop="31738" i_length="100">
            <donor d_prob="0.925" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31737" g_stop="31664" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="82" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31663" i_stop="31575" i_length="89">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31574" g_stop="31462" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="195" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31461" i_stop="31373" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31372" g_stop="31277" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="291" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31276" i_stop="30319" i_length="958">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30318" g_stop="30143" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="467" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E281582" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281582" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="31845" e_stop="31838"/>
          <exon e_start="31737" e_stop="31664"/>
          <exon e_start="31574" e_stop="31462"/>
          <exon e_start="31372" e_stop="31277"/>
          <exon e_start="30318" e_stop="30143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTATCTTGTAATGCACTTTCCATGTCTCATTAACTTTACCAGTTCTTTCTTTCAACCAGGATTTTCCTTAAATTATCAATGCCACTAAACATCTATCTTTATAACAGATACAGTATATTCTGTAAGGCAGCATATGCGAAGTTGAAAGAAAATGCTGAGTCGGTTGTCACAGCTATTCACTGTAAGTTAACTCCTTGGCAGTAAAGTTTAGACTTGATGTTTGTTGCTTCCAACTATTTCTTTGTGTACCAATCTACTCTTTTGATTCAGGGGCTGATGCACTTGAAGCTGCTATCGCTGCTGTTAGTAAATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAGGTCAATATAATGCTTTTTCATGATACATCATTTGCAATTTTTTCCTACATATACCTTATTCATCAAGAAATTTTACGCATTGGGATCAGAGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAGGTATTGTCGCTATATTTACTTCTAATGCGTTGAAAGGAAAATAGCGCACACGGTGTTGCAATGGTTTATTTCCACAAATGTTACATAGTTATGTGGTTAGCTCTTAAAAGGTTCATAAATATTTGACAACACCAGAAAAATATTGTAGCTTAAGCATCTTTAAAATATGGAGCAACTGTAAAGTACCCTTATGCTTGTCTTTCTTCTTCAGGGACTGTTACACCTTTAAGCATCTTCACCCTATTAGACTGAAGTGATAATCCAGGATGAAAATGTGTTTGTATCCTTTTCCTCTTTGGCTCAAATCAACAAGGAATCAAAGTTGAGATATGATTAACGTAGTGATTCAACAAATTTATCTGGCTTTATAGGTCTCACATAAGGGAAGATATCTGTAGTTTATTAGGATTTATTACCAAATCAATAGAAAATTTTGGTCACACCCATTTTTCCAGATTTAGATCAGTACCTGGTTTTACTTCAAATGAAATGACAAGTCTGAACTCTTAGAATATGTCTTGACGGAAGGGTTGTTAAATGACACCTCTAGAAGGTTTAAAGTAAGTTCAAGATGTGATTGATATTTAAAACTTATGATTGAAGTCTTTGTTCTAATGGGTAAAAATTCATATGAATCTGCGCTTTCTTGAAAGATAGCTTGGTAATTACCGGTCTTCTGACATAAATAATAGATTTCAATTTTTCATGGAGATTTGGACTAGGCTGCTTCAGGAATTCTCTATTGATGTTTTTATTGGAAGCTTTTGCCAAGAATTTTGATAAGCAATTTTCTGTACATGTCTTCCTTTGAATGGAGGCGATGCTCATTTTATTTTGAGTGCAATTGCGAAGCTTATAACAGAAAAATTGTAGATCTGTCTTGATCCATCTTTAAATCAGTGTTATCTGGCTGCCAGTTTCTTATTTCAGTAAGAGTTATAATCAGTCTGTTTTCTAGGCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTT</genome_strand>
        <mrna_strand>GGTATCTT....................................................................................................ATACAGTATATTCTGTAAGGCAGCATATGCGAAGTTGAAAGAAAATGCTGAGTCGGTTGTCACAGCTATTCACT.........................................................................................GGGCTGATGCACTTGAAGCTGCTATCGCTGCTGTTAGTAAATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAG.........................................................................................AGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304607" ref_strand="+" ref_description="SGN-E304607 [cLEX-11-F12]">
      <seq>gcaaccggcctcctgcaaagattcctgttccacttccgccatcacattctatcaagattgaaaagacattgagtcggcctgaaaaactgagccctcagggtcatatccttgagacagctattgaagcagcagctactgaagttgtaaatctcagggataatttgaatgagtgggacaataaagttggtgatggcgattgtggttcaactatgttcagaggtgctgtggctatacttgaagacatgaagaagtactatccgttgaatgaccctgcagaaacagtcaatgaaattggagcctccattggaagagtaatggggggaactagcggtatcttatacagtatattctgtaaggcagcatatgcgaagttgaaagaaaatgctgagtcggttgtcacagctattcactgggctgatgcacttgaagctgctatcgctgctgttagtaaatatggaggagctagtgctggttatcgtacccttttagatgctcttatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33646" stop="31185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33346" g_stop="33282" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33281" i_stop="33051" i_length="231">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33050" g_stop="32907" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="209" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32906" i_stop="32823" i_length="84">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32822" g_stop="32779" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="253" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32778" i_stop="31922" i_length="857">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31921" g_stop="31838" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="337" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31837" i_stop="31738" i_length="100">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31737" g_stop="31664" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="411" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31663" i_stop="31575" i_length="89">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31574" g_stop="31485" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="501" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E304607" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33346" e_stop="33282"/>
          <exon e_start="33050" e_stop="32907"/>
          <exon e_start="32822" e_stop="32779"/>
          <exon e_start="31921" e_stop="31838"/>
          <exon e_start="31737" e_stop="31664"/>
          <exon e_start="31574" e_stop="31485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACCGGCCTCCTGCAAAGATTCCTGTTCCACTTCCGCCATCACATTCTATCAAGATTGAAAAGGTATGCCAAATTTAATTTGAAAGCACTGATAAACACATTGCAAATAAGGGTGATGTCGCTGATACTTGATAAATATTCGATTGAACAGTCGCTGTCCCAGACATCAATTGTAGCTACTGCTTTCAATTTTCTTTTTTTGATTTTTTAGGTTGAGAGAGACAGCATATCATATTATAATTCTGTTGCAGATCAATAATATTTACTATTTTACTGTATTTCTTCTTTTATTAGACATTGAGTCGGCCTGAAAAACTGAGCCCTCAGGGTCATATCCTTGAGACAGCTATTGAAGCAGCAGCTACTGAAGTTGTAAATCTCAGGGATAATTTGAATGAGTGGGACAATAAAGTTGGTGATGGCGATTGTGGTTCAACTGTAGGTCTTTGGATAGCCCATTTGTTTCCCTTCATTTGTTCCCCATGTTATCTGCATTTAATAAGCTCCTTTGTGAAACTGCAGATGTTCAGAGGTGCTGTGGCTATACTTGAAGACATGAAGAAGTAGTGAGTCTTCTTTCCTAGATTCTTTCCTCATATAATGTCTCCAAGAAAGTTAAAGGGAGGCTGATTAGTCTTCCCAAGATTCTGCCTCTCCTTTTTATCTCTGGTAAGAGCGCCCCCAAGGCCTAGCTCGAGTGGCAAAGGGTGGAGGACTTATGGCTTACGTCGCAGGTTCAAGCCCCACACCATGCAAAGCGAAGCCCAGTATTTAAGTGGAGAAGGGTAGAGAGGGCCCATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGAGCGGGTCACAGACGGATTTCTCAGTTGTCAAAAAAAATAATTATTCACTAACAGACAATATGTGTCTTTGTTTGTTTTCCCTCTTTCCTGCTTGCACCGTCTGTGGTGTGGTTATTTCAGAGTGTTCTGCTTGTACACATCTGCTTGCAGCATTGTTTGCTCTTGGGAAATCCCTGTAATTAATTGTTGGGTATAGATAGGTTTCATTTTTTAAACAGGGGAGGTAGAAGTCTCTTCATGAGTTAAAACACGAGGTTTTGTGAAAGACAGCTTGAGACGGCAGAAGTTGTGTTTAATCTCCTTTGTAGTCAACTTAATGATATGATATGAAAAATCAGCTGCTATTGCATGTTTTCATTTAGTTATTTTTATGTTTCTTTATTTATTTCCTTTTATCATCTGTGTCATTTTTTGTTCATTTCCCCTCTTTCTTCACTTTTCAAGGTTATGTAAACCAACCTATAGGTTTTTTGCGAGTTTGCTGTATGAATTTTAGATAGTTGCGTAACAACTGCGTGAATTGAGATTATATATTTCCATCTTCGAGAAAATTTACTCCTGCTTTCTGATTCTTCTTTCTTGCAGCTATCCGTTGAATGACCCTGCAGAAACAGTCAATGAAATTGGAGCCTCCATTGGAAGAGTAATGGGGGGAACTAGCGGTATCTTGTAATGCACTTTCCATGTCTCATTAACTTTACCAGTTCTTTCTTTCAACCAGGATTTTCCTTAAATTATCAATGCCACTAAACATCTATCTTTATAACAGATACAGTATATTCTGTAAGGCAGCATATGCGAAGTTGAAAGAAAATGCTGAGTCGGTTGTCACAGCTATTCACTGTAAGTTAACTCCTTGGCAGTAAAGTTTAGACTTGATGTTTGTTGCTTCCAACTATTTCTTTGTGTACCAATCTACTCTTTTGATTCAGGGGCTGATGCACTTGAAGCTGCTATCGCTGCTGTTAGTAAATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATAC</genome_strand>
        <mrna_strand>GCAACCGGCCTCCTGCAAAGATTCCTGTTCCACTTCCGCCATCACATTCTATCAAGATTGAAAAG.......................................................................................................................................................................................................................................ACATTGAGTCGGCCTGAAAAACTGAGCCCTCAGGGTCATATCCTTGAGACAGCTATTGAAGCAGCAGCTACTGAAGTTGTAAATCTCAGGGATAATTTGAATGAGTGGGACAATAAAGTTGGTGATGGCGATTGTGGTTCAACT....................................................................................ATGTTCAGAGGTGCTGTGGCTATACTTGAAGACATGAAGAAGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCCGTTGAATGACCCTGCAGAAACAGTCAATGAAATTGGAGCCTCCATTGGAAGAGTAATGGGGGGAACTAGCGGTATCTT....................................................................................................ATACAGTATATTCTGTAAGGCAGCATATGCGAAGTTGAAAGAAAATGCTGAGTCGGTTGTCACAGCTATTCACT.........................................................................................GGGCTGATGCACTTGAAGCTGCTATCGCTGCTGTTAGTAAATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203243" ref_strand="+" ref_description="SGN-E203243 [cLEB-3-G19]">
      <seq>gcacgaggattaatggattaggagcaacaccattgatggaattgatgattatagctggcaaggctgtcccagaattgcagcttgaacatggtctagctgctgatagagtctatacagggtcatttatgacgtcacttgatatggcaggcttttcaatttcggtaatgaaggctgatcaagcaattttagatcgtttagatgctccaactaaagctccaaattggcctgttggtgctgaaggcaaccggcctcctgcaaagattcctgttccacttccgccatcacattctatcaagattgaaaagacattgagtcggcctgaaaaactgagccctcagggtcatatccttgagacagctattgaagcagcagctactgaagttgtaaatctcagggataatttgaatgagtgggacaataaagatggtgatggcgattgtggttcaactatgttcagaggtgctgtggctatacttgaagacatgaagaagtactatccgttgaatgaccctgcacaaacagtcaatgaaattggagcctccattggaagagtaatggggggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34231" stop="31550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33930" g_stop="33800" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="147" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33799" i_stop="33732" i_length="68">
            <donor d_prob="0.818" d_score="0.98"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33731" g_stop="33639" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="240" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33638" i_stop="33347" i_length="292">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33346" g_stop="33282" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="305" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33281" i_stop="33051" i_length="231">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33050" g_stop="32907" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="449" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32906" i_stop="32823" i_length="84">
            <donor d_prob="0.920" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32822" g_stop="32779" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="493" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32778" i_stop="31922" i_length="857">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31921" g_stop="31850" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="565" r_length="72" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E203243" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33930" e_stop="33800"/>
          <exon e_start="33731" e_stop="33639"/>
          <exon e_start="33346" e_stop="33282"/>
          <exon e_start="33050" e_stop="32907"/>
          <exon e_start="32822" e_stop="32779"/>
          <exon e_start="31921" e_stop="31850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGGAGCAACACCATTGATGGAATTGATGATTATAGCTGGCAAGGCTGTCCCAGAATTGCAGCTTGAACATGGTCTAGCTGTTGATAGAGTCTATACAGGGTCATTTATGACGTCACTTGATATGGCAGGTATATCAGGTTATAAGTCCTTTTTCTTCGCCCAACAACAGTCATTTTCTTACTATAGTTATATGCAGGCTTTTCAATTTCGGTAATGAAGGCTGATCAAGCAATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTTGGTGCTGAAGGTCAGTTTCTATTTGTCTATTATTACGTTGGACTATGTATGGCCATATTGGTGGCTCATGCTAGTTTTGACTTCTGGTTCCTTTTACTATTTTTATTAGGAAAAGCTCCCCCTCATTTATATTTCCCTTAGTAAAAGAACTAGAGCAGAAAGAAAAGTTCATATTAGGTAATTCAGTAGTATTCTCTTATCTGTGGGTCATATAACTAGCGCATAATCTGTGTGATTTTGTAGCAATTAACCCTGTATTAGATAATAGATCTACTTTGCTTACTGGAAATTAAAAATTTCAGGCAACCGGCCTCCTGCAAAGATTCCTGTTCCACTTCCGCCATCACATTCTATCAAGATTGAAAAGGTATGCCAAATTTAATTTGAAAGCACTGATAAACACATTGCAAATAAGGGTGATGTCGCTGATACTTGATAAATATTCGATTGAACAGTCGCTGTCCCAGACATCAATTGTAGCTACTGCTTTCAATTTTCTTTTTTTGATTTTTTAGGTTGAGAGAGACAGCATATCATATTATAATTCTGTTGCAGATCAATAATATTTACTATTTTACTGTATTTCTTCTTTTATTAGACATTGAGTCGGCCTGAAAAACTGAGCCCTCAGGGTCATATCCTTGAGACAGCTATTGAAGCAGCAGCTACTGAAGTTGTAAATCTCAGGGATAATTTGAATGAGTGGGACAATAAAGTTGGTGATGGCGATTGTGGTTCAACTGTAGGTCTTTGGATAGCCCATTTGTTTCCCTTCATTTGTTCCCCATGTTATCTGCATTTAATAAGCTCCTTTGTGAAACTGCAGATGTTCAGAGGTGCTGTGGCTATACTTGAAGACATGAAGAAGTAGTGAGTCTTCTTTCCTAGATTCTTTCCTCATATAATGTCTCCAAGAAAGTTAAAGGGAGGCTGATTAGTCTTCCCAAGATTCTGCCTCTCCTTTTTATCTCTGGTAAGAGCGCCCCCAAGGCCTAGCTCGAGTGGCAAAGGGTGGAGGACTTATGGCTTACGTCGCAGGTTCAAGCCCCACACCATGCAAAGCGAAGCCCAGTATTTAAGTGGAGAAGGGTAGAGAGGGCCCATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGAGCGGGTCACAGACGGATTTCTCAGTTGTCAAAAAAAATAATTATTCACTAACAGACAATATGTGTCTTTGTTTGTTTTCCCTCTTTCCTGCTTGCACCGTCTGTGGTGTGGTTATTTCAGAGTGTTCTGCTTGTACACATCTGCTTGCAGCATTGTTTGCTCTTGGGAAATCCCTGTAATTAATTGTTGGGTATAGATAGGTTTCATTTTTTAAACAGGGGAGGTAGAAGTCTCTTCATGAGTTAAAACACGAGGTTTTGTGAAAGACAGCTTGAGACGGCAGAAGTTGTGTTTAATCTCCTTTGTAGTCAACTTAATGATATGATATGAAAAATCAGCTGCTATTGCATGTTTTCATTTAGTTATTTTTATGTTTCTTTATTTATTTCCTTTTATCATCTGTGTCATTTTTTGTTCATTTCCCCTCTTTCTTCACTTTTCAAGGTTATGTAAACCAACCTATAGGTTTTTTGCGAGTTTGCTGTATGAATTTTAGATAGTTGCGTAACAACTGCGTGAATTGAGATTATATATTTCCATCTTCGAGAAAATTTACTCCTGCTTTCTGATTCTTCTTTCTTGCAGCTATCCGTTGAATGACCCTGCAGAAACAGTCAATGAAATTGGAGCCTCCATTGGAAGAGTAATGGGGGGAAC</genome_strand>
        <mrna_strand>ATTAGGAGCAACACCATTGATGGAATTGATGATTATAGCTGGCAAGGCTGTCCCAGAATTGCAGCTTGAACATGGTCTAGCTGCTGATAGAGTCTATACAGGGTCATTTATGACGTCACTTGATATGGCAG....................................................................GCTTTTCAATTTCGGTAATGAAGGCTGATCAAGCAATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTTGGTGCTGAAG....................................................................................................................................................................................................................................................................................................GCAACCGGCCTCCTGCAAAGATTCCTGTTCCACTTCCGCCATCACATTCTATCAAGATTGAAAAG.......................................................................................................................................................................................................................................ACATTGAGTCGGCCTGAAAAACTGAGCCCTCAGGGTCATATCCTTGAGACAGCTATTGAAGCAGCAGCTACTGAAGTTGTAAATCTCAGGGATAATTTGAATGAGTGGGACAATAAAGATGGTGATGGCGATTGTGGTTCAACT....................................................................................ATGTTCAGAGGTGCTGTGGCTATACTTGAAGACATGAAGAAGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCCGTTGAATGACCCTGCACAAACAGTCAATGAAATTGGAGCCTCCATTGGAAGAGTAATGGGGGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229900" ref_strand="+" ref_description="SGN-E229900 [cLEL-33-J15](-)">
      <seq>attatccaccgagtttagaaggctgtgattggtccaaagaacgggtcacaggcggatttctcagttgtcaaaaaaaataattattcactaacagacaatatgtgtctttgtttgttttccctctttcctgcttgcaccgtctgtggtgtggttatttcagagtgttctgcttgtacacatctgcttgcagcattgtttgctcttgggaaatccctgtaattaattgttgggtatagataggtttcattttttaaacaggggaggtagaagtctcttcatgagttaaaacacgaggttttgtgaaagacagcttgagacggcagaagttgtgtttaatctcctttgtagtcaacttaatgatatgatatgaaaaatcagctgctattgcatgttttcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32846" stop="12254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32546" g_stop="32133" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E229900" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32546" e_stop="32133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGAGCGGGTCACAGACGGATTTCTCAGTTGTCAAAAAAAATAATTATTCACTAACAGACAATATGTGTCTTTGTTTGTTTTCCCTCTTTCCTGCTTGCACCGTCTGTGGTGTGGTTATTTCAGAGTGTTCTGCTTGTACACATCTGCTTGCAGCATTGTTTGCTCTTGGGAAATCCCTGTAATTAATTGTTGGGTATAGATAGGTTTCATTTTTTAAACAGGGGAGGTAGAAGTCTCTTCATGAGTTAAAACACGAGGTTTTGTGAAAGACAGCTTGAGACGGCAGAAGTTGTGTTTAATCTCCTTTGTAGTCAACTTAATGATATGATATGAAAAATCAGCTGCTATTGCATGTTTTCATTTAGTTATTTTTATGT</genome_strand>
        <mrna_strand>ATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGAACGGGTCACAGGCGGATTTCTCAGTTGTCAAAAAAAATAATTATTCACTAACAGACAATATGTGTCTTTGTTTGTTTTCCCTCTTTCCTGCTTGCACCGTCTGTGGTGTGGTTATTTCAGAGTGTTCTGCTTGTACACATCTGCTTGCAGCATTGTTTGCTCTTGGGAAATCCCTGTAATTAATTGTTGGGTATAGATAGGTTTCATTTTTTAAACAGGGGAGGTAGAAGTCTCTTCATGAGTTAAAACACGAGGTTTTGTGAAAGACAGCTTGAGACGGCAGAAGTTGTGTTTAATCTCCTTTGTAGTCAACTTAATGATATGATATGAAAAATCAGCTGCTATTGCATGTTTTCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230255" ref_strand="+" ref_description="SGN-E230255 [cLEL-33-J15](-)">
      <seq>tatccaccgagtttagaaggctgtgattggtccaaagagcgggtcacagacggatttctcagttgtcaaaaaaaataattattcactaacagacaatatgtgtctttgtttgttttccctctttcctgcttgcaccgtctgtggtgtggttatttcagagtgttctgcttgtacacatctgcttgcagcattgtttgctcttgggaaatccctgtaattaattgttgggtatagataggtttcattttttaaacaggggaggtagaagtctcttcatgagttaaaacacgaggttttgtgaaagacagcttgagacggcagaagttgtgtttaatctcctttgtagtcaacttaatgatatgatatgaaaaatcagctgctattgcatgttttcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32844" stop="12254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32544" g_stop="32133" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E230255" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32544" e_stop="32133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGAGCGGGTCACAGACGGATTTCTCAGTTGTCAAAAAAAATAATTATTCACTAACAGACAATATGTGTCTTTGTTTGTTTTCCCTCTTTCCTGCTTGCACCGTCTGTGGTGTGGTTATTTCAGAGTGTTCTGCTTGTACACATCTGCTTGCAGCATTGTTTGCTCTTGGGAAATCCCTGTAATTAATTGTTGGGTATAGATAGGTTTCATTTTTTAAACAGGGGAGGTAGAAGTCTCTTCATGAGTTAAAACACGAGGTTTTGTGAAAGACAGCTTGAGACGGCAGAAGTTGTGTTTAATCTCCTTTGTAGTCAACTTAATGATATGATATGAAAAATCAGCTGCTATTGCATGTTTTCATTTAGTTATTTTTATGT</genome_strand>
        <mrna_strand>TATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGAGCGGGTCACAGACGGATTTCTCAGTTGTCAAAAAAAATAATTATTCACTAACAGACAATATGTGTCTTTGTTTGTTTTCCCTCTTTCCTGCTTGCACCGTCTGTGGTGTGGTTATTTCAGAGTGTTCTGCTTGTACACATCTGCTTGCAGCATTGTTTGCTCTTGGGAAATCCCTGTAATTAATTGTTGGGTATAGATAGGTTTCATTTTTTAAACAGGGGAGGTAGAAGTCTCTTCATGAGTTAAAACACGAGGTTTTGTGAAAGACAGCTTGAGACGGCAGAAGTTGTGTTTAATCTCCTTTGTAGTCAACTTAATGATATGATATGAAAAATCAGCTGCTATTGCATGTTTTCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305048" ref_strand="+" ref_description="SGN-E305048 [cLEX-10-B2]">
      <seq>caggagctgctgtagctgaccttcaaccagtagatgtggtggtttctcatgttctgaaggagattttgtcaccggagaccaactacgttccaatcacgcgtgggagtagagtcgtgctcctgattaatggattaggagcaacaccattgatggaattgatgattatagctggcaaggctgtcccagaattgcagcttgaacatggtctagctgttgatagagtctatacagggtcatttatgacgtcacttgatatggcaggcttttcaatttcggtaatgaaggctgatcaagcaattttagatcgtttagatgctccaactaaagctccaaattggcctgttggtgctgaaggcaaccggcctcctgcaaagattcctgttccacttccgccatcacattctatcaagattgaaaagacattgagtcggcctgaaaaactgagccctcagggtcatatccttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35488" stop="32703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35188" g_stop="35115" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35114" i_stop="34325" i_length="790">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.709" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34324" g_stop="34269" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="130" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34268" i_stop="33931" i_length="338">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33930" g_stop="33800" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="261" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33799" i_stop="33732" i_length="68">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33731" g_stop="33639" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="354" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33638" i_stop="33347" i_length="292">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33346" g_stop="33282" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="419" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33281" i_stop="33051" i_length="231">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33050" g_stop="33003" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="467" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E305048" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35188" e_stop="35115"/>
          <exon e_start="34324" e_stop="34269"/>
          <exon e_start="33930" e_stop="33800"/>
          <exon e_start="33731" e_stop="33639"/>
          <exon e_start="33346" e_stop="33282"/>
          <exon e_start="33050" e_stop="33003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAGCTGCTGTAGCTGACCTTCAACCAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTTGTCACCGGTATGTGAATACTTGGAGTCTGAAAGTTTGACTTGATATGAACTAGTACTTGATGCACTAAAAGTTTTCTGATAATTGTTTGAATGATCACTATGAATTGGATGAAGTGGAATTTACTTTTTGATGAGATAAACTTTTGATCTTTCTTTTGGTACTAAAACAAATGAGGAAAGTGACTCCAAAAAACTATAACCATGTAGATCTAAGGATTTAATCTTTGCCATTCGTGTACACTATAAAGCTACAAGGACTAATGATGAGGATTTTAATATGTTTTTATTACATTTTTGTGAAAGAAGATAGGCTGGGCAAAATATTCTGTTTGGGGTCCCAACATCTTGTAAGAATGAAGAGCAAAGTAGAAACAATTTTTGGAGTTGAACTATTAACTGAAACACATAAAAAATAGTCATTCATTAGTTATGTTAATTTAGTAGAGGGAAAAAAAAGAAATAAAGAAAAAAGGCACTAGCTTTAGTTTGGGAGTTTTTATGCAATCAGTCTATTCTTCTCACCTTCTTTCAGTGAGGTTGTGGAGGATATTCACATGACAATTTTTCTTGTGCATTAACCCCCCCCTCAAAAAAAAAGAAAAGAAAAAAGAGAAGTTGGAATTCCTCCTAGCTTACTCCATCGAATTTTCATGGGCCAGAGGGGTCTAGTTTTAAAAGAGGAAGTCTTTCAGGAAGAGGGACTACGAATGCACAACAACAACCTTGGTCTCATTCATCTTAGTTAAGAACACTTATTCTGCAGAAGGAAATTTCACTGTCACTGAATGTCTTTGTAGGAGACCAACTACGTTCCAATCACGCGTGGGAGTAGAGTCGTGCTCCTGATTAATGGGTAAGTTTCAGCTCTACTCGTCTATATATGCCTCTGTCATCACATCCCTCCAAGTATTGTGGCGGTTTAGTTATCCCGTTCTGTTCTCATTCTCTTTTGCCTTTCTGATCCTTTCCATTTCTCGCATTTTTGGTTGACGGAGCAGATTCGGTTTTATAGTATATAGAAAGATCTCCTGGTAGCATGCTTACCCCGTATCTGACCTTGGCCCCTATATAGTTTTCCTTGAATGTTCCATTTGGTTTTTGTGGAATACTTCAATTAGACTCCTCAAATTTCAAATGAAATCATTTTTCACATTTTTCTGTGTACTTTTTCTTTTTACTCCCCTACTGCAGATTAGGAGCAACACCATTGATGGAATTGATGATTATAGCTGGCAAGGCTGTCCCAGAATTGCAGCTTGAACATGGTCTAGCTGTTGATAGAGTCTATACAGGGTCATTTATGACGTCACTTGATATGGCAGGTATATCAGGTTATAAGTCCTTTTTCTTCGCCCAACAACAGTCATTTTCTTACTATAGTTATATGCAGGCTTTTCAATTTCGGTAATGAAGGCTGATCAAGCAATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTTGGTGCTGAAGGTCAGTTTCTATTTGTCTATTATTACGTTGGACTATGTATGGCCATATTGGTGGCTCATGCTAGTTTTGACTTCTGGTTCCTTTTACTATTTTTATTAGGAAAAGCTCCCCCTCATTTATATTTCCCTTAGTAAAAGAACTAGAGCAGAAAGAAAAGTTCATATTAGGTAATTCAGTAGTATTCTCTTATCTGTGGGTCATATAACTAGCGCATAATCTGTGTGATTTTGTAGCAATTAACCCTGTATTAGATAATAGATCTACTTTGCTTACTGGAAATTAAAAATTTCAGGCAACCGGCCTCCTGCAAAGATTCCTGTTCCACTTCCGCCATCACATTCTATCAAGATTGAAAAGGTATGCCAAATTTAATTTGAAAGCACTGATAAACACATTGCAAATAAGGGTGATGTCGCTGATACTTGATAAATATTCGATTGAACAGTCGCTGTCCCAGACATCAATTGTAGCTACTGCTTTCAATTTTCTTTTTTTGATTTTTTAGGTTGAGAGAGACAGCATATCATATTATAATTCTGTTGCAGATCAATAATATTTACTATTTTACTGTATTTCTTCTTTTATTAGACATTGAGTCGGCCTGAAAAACTGAGCCCTCAGGGTCATATCCTTGAG</genome_strand>
        <mrna_strand>CAGGAGCTGCTGTAGCTGACCTTCAACCAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTTGTCACCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACCAACTACGTTCCAATCACGCGTGGGAGTAGAGTCGTGCTCCTGATTAATGG..................................................................................................................................................................................................................................................................................................................................................ATTAGGAGCAACACCATTGATGGAATTGATGATTATAGCTGGCAAGGCTGTCCCAGAATTGCAGCTTGAACATGGTCTAGCTGTTGATAGAGTCTATACAGGGTCATTTATGACGTCACTTGATATGGCAG....................................................................GCTTTTCAATTTCGGTAATGAAGGCTGATCAAGCAATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTTGGTGCTGAAG....................................................................................................................................................................................................................................................................................................GCAACCGGCCTCCTGCAAAGATTCCTGTTCCACTTCCGCCATCACATTCTATCAAGATTGAAAAG.......................................................................................................................................................................................................................................ACATTGAGTCGGCCTGAAAAACTGAGCCCTCAGGGTCATATCCTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323558" ref_strand="+" ref_description="SGN-E323558 [cTOC-2-K21]">
      <seq>gatggagcttggtcttggaatacatggggaaccaggagctgctgtagctgaccttcaaccagtagatgtggtggtttctcatgttctgaaggagattttgtcaccggagaccaactacgttccaatcacgcgtgggagtagagtcgtgctcctgattaatggattaggagcaacaccattgatggaattgatgattatagctggcaaggctgtcccagaattgcagcttgaacatggtctagctgttgatagagtctatacagggtcatttatgacgtcacttgatatggcaggcttttcaatttcggtaatgaaggctgatcaagcaattttagatcgtttagatgctccaactaaagctccaaattggcctgttggtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35872" stop="33343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35572" g_stop="35551" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35550" i_stop="35199" i_length="352">
            <donor d_prob="0.210" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35198" g_stop="35115" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="106" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35114" i_stop="34325" i_length="790">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.709" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34324" g_stop="34269" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="162" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34268" i_stop="33931" i_length="338">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33930" g_stop="33800" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="293" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33799" i_stop="33732" i_length="68">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33731" g_stop="33643" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="382" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E323558" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35572" e_stop="35551"/>
          <exon e_start="35198" e_stop="35115"/>
          <exon e_start="34324" e_stop="34269"/>
          <exon e_start="33930" e_stop="33800"/>
          <exon e_start="33731" e_stop="33643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGAGCTTGGTCTTGGAATAGTAAGTTCCTTCTTAGGCACAAGGGTACTAATGATTGATATTAGCAATGGGGAAGAAGTTGATAAGTCAAGCTTTACTAGATGAAACATGTCATATTACATTCATGTTTTGGAGACATGATAATCCTGTAATTTACCTTGGGGGTGCTGTGAATGCCGTTCATATCATTTCTGGTTATAGCATTTCTACACTCGATGTTGCTTTTCAATAGTAGAATTGGTTGGGTCTCTTCAAATGTGTCTGTGCTACAGTTGGAACTTCCAAGGTCTAAGTGCTGGCAGACTTCTTAGAATTCTGTAATCTTCAGTTATGTATTATCAAATTGTTTGCACTGGTTTCTCCTTTTTTTCAGCATGGGGAACCAGGAGCTGCTGTAGCTGACCTTCAACCAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTTGTCACCGGTATGTGAATACTTGGAGTCTGAAAGTTTGACTTGATATGAACTAGTACTTGATGCACTAAAAGTTTTCTGATAATTGTTTGAATGATCACTATGAATTGGATGAAGTGGAATTTACTTTTTGATGAGATAAACTTTTGATCTTTCTTTTGGTACTAAAACAAATGAGGAAAGTGACTCCAAAAAACTATAACCATGTAGATCTAAGGATTTAATCTTTGCCATTCGTGTACACTATAAAGCTACAAGGACTAATGATGAGGATTTTAATATGTTTTTATTACATTTTTGTGAAAGAAGATAGGCTGGGCAAAATATTCTGTTTGGGGTCCCAACATCTTGTAAGAATGAAGAGCAAAGTAGAAACAATTTTTGGAGTTGAACTATTAACTGAAACACATAAAAAATAGTCATTCATTAGTTATGTTAATTTAGTAGAGGGAAAAAAAAGAAATAAAGAAAAAAGGCACTAGCTTTAGTTTGGGAGTTTTTATGCAATCAGTCTATTCTTCTCACCTTCTTTCAGTGAGGTTGTGGAGGATATTCACATGACAATTTTTCTTGTGCATTAACCCCCCCCTCAAAAAAAAAGAAAAGAAAAAAGAGAAGTTGGAATTCCTCCTAGCTTACTCCATCGAATTTTCATGGGCCAGAGGGGTCTAGTTTTAAAAGAGGAAGTCTTTCAGGAAGAGGGACTACGAATGCACAACAACAACCTTGGTCTCATTCATCTTAGTTAAGAACACTTATTCTGCAGAAGGAAATTTCACTGTCACTGAATGTCTTTGTAGGAGACCAACTACGTTCCAATCACGCGTGGGAGTAGAGTCGTGCTCCTGATTAATGGGTAAGTTTCAGCTCTACTCGTCTATATATGCCTCTGTCATCACATCCCTCCAAGTATTGTGGCGGTTTAGTTATCCCGTTCTGTTCTCATTCTCTTTTGCCTTTCTGATCCTTTCCATTTCTCGCATTTTTGGTTGACGGAGCAGATTCGGTTTTATAGTATATAGAAAGATCTCCTGGTAGCATGCTTACCCCGTATCTGACCTTGGCCCCTATATAGTTTTCCTTGAATGTTCCATTTGGTTTTTGTGGAATACTTCAATTAGACTCCTCAAATTTCAAATGAAATCATTTTTCACATTTTTCTGTGTACTTTTTCTTTTTACTCCCCTACTGCAGATTAGGAGCAACACCATTGATGGAATTGATGATTATAGCTGGCAAGGCTGTCCCAGAATTGCAGCTTGAACATGGTCTAGCTGTTGATAGAGTCTATACAGGGTCATTTATGACGTCACTTGATATGGCAGGTATATCAGGTTATAAGTCCTTTTTCTTCGCCCAACAACAGTCATTTTCTTACTATAGTTATATGCAGGCTTTTCAATTTCGGTAATGAAGGCTGATCAAGCAATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTTGGTGCT</genome_strand>
        <mrna_strand>GATGGAGCTTGGTCTTGGAATA................................................................................................................................................................................................................................................................................................................................................................CATGGGGAACCAGGAGCTGCTGTAGCTGACCTTCAACCAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTTGTCACCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACCAACTACGTTCCAATCACGCGTGGGAGTAGAGTCGTGCTCCTGATTAATGG..................................................................................................................................................................................................................................................................................................................................................ATTAGGAGCAACACCATTGATGGAATTGATGATTATAGCTGGCAAGGCTGTCCCAGAATTGCAGCTTGAACATGGTCTAGCTGTTGATAGAGTCTATACAGGGTCATTTATGACGTCACTTGATATGGCAG....................................................................GCTTTTCAATTTCGGTAATGAAGGCTGATCAAGCAATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTTGGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542308" ref_strand="+" ref_description="SGN-E542308 [TUS-63-I19]">
      <seq>acaaagcattcaacaattgaagtctactctccccacacctacaaagccctcagcacaattatccgatggattttcagagcaaaaaactcatcaacgaccccaatgatgttgtgacagagttcattgagggacttattgagaattatccagggttgcagtatctggatggtttcccagaggttaaggtcgtcttgcgtgctgatgtttctggtgcaaaatatgacaaagttgccatcatatcaggtggtggaagtggccatgagcctgctcatgctggatttgttggagaagggatgctgactgcagctatctgtggggacgtttttgcctctccaaatgttgattcaattcttgcgggcatacgagctgtcacaggtcccatggggtgccttcttattgtcaagaactatactggtgatcgactgaattttggtttggctgctgaacaagcaaaatctgaaggttataaagtcgagatggtaatcgtcggtgatgactgtgctttaccacctccaagaggcattgctggccgaagagggttggcagggacgcttcttgttcacaaggttgccggagctgcagcagcttgtggtcttccccttgctgacgttgcagctgaagccaaacgtgcatcagaaatggttgggacaatgggcgttgcgttatctgtttgcacgttgccaggacaggtgacttcagaccgtttaggcccagggaagatggagcttggtcttggaatacatggggaaacaggagctgctgtagctgaccttcaacagtagatgtggtggtttctcatgttctgaaggagatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40614" stop="34822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40314" g_stop="40262" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40261" i_stop="40173" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40172" g_stop="40121" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="105" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40120" i_stop="38589" i_length="1532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38588" g_stop="38515" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="179" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38514" i_stop="38405" i_length="110">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38404" g_stop="38341" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="243" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38340" i_stop="37585" i_length="756">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37584" g_stop="37472" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="356" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37471" i_stop="37375" i_length="97">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37374" g_stop="37327" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="404" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37326" i_stop="37076" i_length="251">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="37075" g_stop="37004" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="476" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="37003" i_stop="36861" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="36860" g_stop="36771" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="566" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="36770" i_stop="35725" i_length="1046">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="35724" g_stop="35551" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="740" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="35550" i_stop="35199" i_length="352">
            <donor d_prob="0.210" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="35198" g_stop="35122" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="816" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E542308" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40314" e_stop="40262"/>
          <exon e_start="40172" e_stop="40121"/>
          <exon e_start="38588" e_stop="38515"/>
          <exon e_start="38404" e_stop="38341"/>
          <exon e_start="37584" e_stop="37472"/>
          <exon e_start="37374" e_stop="37327"/>
          <exon e_start="37075" e_stop="37004"/>
          <exon e_start="36860" e_stop="36771"/>
          <exon e_start="35724" e_stop="35551"/>
          <exon e_start="35198" e_stop="35122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAGGTTTTTCTTTCTTCTCAAAGAAGACACTTCACTTTTTTTTCTCTTTCTCTTTGAATTTTTTCTAATTTGTATCGCCTCTGTAAATGCAGCACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATGGTAACTGAAACCCCTAAAAATTGCTCTTATCGTTTTTACTTTGTTCTTCTTTCTCAATTGGATTGTTTATTGGATGTTGATGTGACAGATTGTTTATGTGCATTGCTTGTCATGTTCGTTGAATTGAAAGATGAGATTTTGTATAATTTGAGAAAGGGATTTTTTTAATCAATCGAGTTGTTTGAGTATATACGATCCTTTGTGGAAGTAGAAAAGAAAAAGAATTGACATTAGTGTTTTGTCTTGTTGGAAATGAAGGGAAGTCAAATATAGGAATAAAAAAGATTTAGTTTTAGGTATTAGGTAGAACTACTTATTTGCTATGCTTATCATACCAAACCTAAAGTAAGAGCATATGTGTAGAAAGGAGAAAAGTGTTTTGTTTTGATAACTGTGTTGTCCGGTTTCCGGTTTCCATTGTCTAGGACAACTTACCCTCAGTTAGACTAATTACACGGGGTACTAGCTAATGCGTAATAACACATATATCGATTAACTCTGTCCACCGCGGTATGGATAGAGGGGAAGAAATCGCCTAGTGCTTTTTGCCTAGGGATTTGAACATGAGAATTCATGCTTCTCAATTCACTTCGTCAACCACTAGGTCACATCTTTGGACGCGCCTTTTCGCTTCTAGAAATCTAGAACATTTATGGACCAATGTAAAAAAAAGAAATTCAACATTTTGACAGTAGCGAGGAGAAGGAAAGGAGTTGAAAGGGGCATGTATCCTTTTTTTTTTCTAAAGAAAGAGGGCTACTTCACGAGTCGCTTCTAATAATTGAAAAGGTTCACAACTAGTTCAGTCTATAGTGACAAAGGGAATGTTTCTGCCGGAGCCATGGAAAAAAGTATTCACTCCTGCTTACAGCACCTTCTTCACTCGTCTCGCTACTTCAGAACTGTTCAGCGGACACGTGGAGTCAAATGCAAACCATTTGTGGGAATTTGAGAACTTTCTCTTTTATCTCTTTCTCCTTGCTGGAAGGCTGTTTATGAGCGGAAGGGAAGTAGAGGTAGAGGGTCCGAAGGAGAGAGGAGATCTCTGCTATTATCGTTAATTAGGTGTGCCTCCAGATCCGAATGTATACCCTAGGCCAAGGGGTGCGATCACTTACAATGATCGGAGGCAGGTCAGGGGCTGGCGGATGCCCCCAGCTTCTTAAGTTTGGGAATTCCAAATGTTCTGGCACTTAATTTACATTAAAAAATGAATTAGTGTGGTAATGAAATGGGCCTGAATATGAAAGACTGGATGTATAAGGTTCACGTAGCTGATCAGAACTAATTTGGAATTGAGATCTAGTTGAATGACATCATATTCTGTTTCAATAGAAATGTATGTACATTAATATTTTCCTTATCAAAATTAATAAAAGAAATGTATGTACACTTTTGTGTGTCATATGTATGTGGCAGAATTAAATGTTATAGAGCTTTGTGAAGCTTATAATAGGTACTGTAGGTCTTATGTTATGTATGTAAATCCTAATAATTATCTGCTGTAGAGACTGAAGTGCAATGATTTGCAGATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAGGTGATCTGCCTTCAAATACTTTGTTGACTTTTTTGTTTACATGTCTCTCTACTAAGATAATATGTGTTGCAAGTTGGTTGTAACATGTTATCTTCTGTGCTGAACGCCAGGTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAGGTTTCTTCAATTTGAACTGTGTTTCATGTCTATATTTCAACACTGGAGTTTGCGTTTCAGTGGTAGCAATAATAATTTGGCATTCAGAGTGTCATACACAAGTTAGAAAAAGATCAAGCTTGACAAACTAATCAATCTGTATAATAGTGAAACTGGTTCTTATAATCAGTTAATACTATAGGTCTTGTATGCATTCCTTGCTCACCTCCTCTGAAAGATAATATCAGTTGCGTATGAGATTCTGCTGCAGTTTTGTGTTTAAAACTAAATACAGTTTTCAGTAGTTCCTTTATATGCAATGACTAATCATTTTCTGTTTCATGGGGTGATAATTTTATCAATGTGGTTCAGATCTTCCCATAAAGAAGTGGTATAGAACGTAAAAGAAATTGGTTCCCTACAAATGACTCCTAAACATCTAACACTAACATAAACCTCACGGGTGCACCAAAACTTTTCTAGAAATAAAAGGCATGCTCCGAATGCACAAAATTGTTTTCCACTCCTTCAAGGCTGTCTTGTATATTTCCCATAAGTACCCACATATTAGCCAAAGGAGCGGCATCCCATCCTCTGCATCTTCTTTTCCTTAGCTGGACAGAACAACCTTGAACTCTAGCTGCCATTGACCACTAATTATATACGAATTTACGACTTAAAAGTGTTCTTGAGAATCTTTAACTTGGGATGTATCTTTGGAACTTCAGTGAAGTGAAGTGCAGTTTAACCTGGTATCTTGGTACTTCTATAACTTAGGTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCGGTATGATATGCTATTAAGTATTACCCCCTCTGTTAGCATGTAGACATATATAAATTCTTCCCTATTTATGTCTGTCTACTGACCTGATTCAATTTAGGGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAGGTACCACTTATCCTAGCTGTTAATTTTATTCCTACCCTTGTCTAGTTTTACCAGTTAGGTTTAATGGGGTTGACAGTGCACATAAAGGATCACCAATTATCATCCTACTTTTGGATATTTACTGTTGAAAGAAAGATGCGGCGGATTGCTGTTACATTCTTCATTTATGGTTAATAATTTATAACTCATAATGAAGTCATTTCATGATTTGCTTACATTTCATGATTACAATGCGCTTTGGTTCTTTACAGAACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAGGTATCATTGTGATATCAGTATAATTAATTTGTTGCTATTTATTATTTTTAATATGATGACAATGATTGCAGTAGCCAAGTAATCATCAAAAACTGGCAGAAAGTACTCACTGATATACATGCATATATTTTTCTTTATCCCAGATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAGGTTCACAATCTCTATCTGCGTGCATGTCTTTTAGATTTCATTTGAATGGATATATTTGACTTCAGTCATCACTGATTGAAGCTTTTACAATTTTCCTCTCAATTCAAAACAAAATTTTTCCTTTTGATACCACCTACACAATATATTGGAGTTCTATGTGTTTTGTGTAATATATCTGCTTCTCTTTCCTTTAGTTCAAAGTGCATTCACATATTTTTATGGGGCCTCCTATTAAATCCATTGAGTTTCATATTAGTGTGGCACAATGTTTGATAGAACAATATAATTCATTTTACTGTGCCACATTACATAATGTTGTTCCAAGGTCACAAGAAACAATAATATTAATTATCTCTTTGGTGTTCTTTACTTTTCAATGATACATAAGAGAACTATTAGTTACCAGTTTAAAAAAAAAATGTAAGAGAACTATCTCTGATCATTTGAGTGACAACATTTTCAGCTATTTAAAATGCATACTGAGAAAGCTGGTAATTTCAACGTTTTGAGACAAATAGTACTTTACTAAAAAACCCAGCTCCTAAAAGCTGGCAAATCGTACTAAAGTAAATTAATATATACAGATATTTGTTGGAAATTCTTACTTTGTACCTACAGCAACAAATATATTTTTTATCAAGGCGATTCTAGGTGTTACATGTCCATCATCCTATGTGTTCACATGTTTCTTTATTTCTACTTATGGTGTATCTGTGTCTGTTTGTTTTTTCGGGATGGTGGGTGGTTGGGGTCAAATACCCCAATTATCTGAAGGGCACCAAATTTTCATGGTCTTTTGACAAGTTGTTTTTTCAATGCTCTGTTATAGAGGGTACCTGGAATATTGTTTTGCTTCTTATGCAGAACTATCCATATTTACAAAATCTTTTCTGCTTCATTGTTGAATTCAAATTTATGAGACACTGGCTAGTCTGTGTAGCAATCACTTTACCTATTTGTCTCGCTGCATGTTTGGTTGAAGTTCACAGATATTATTGGTTTCAGTTGCTTTCCAATGTGTCTTTTCTGAATTTCACTTACTTCAGGTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCGTTATCTGTTTGCACGTTGCCAGGACAGGTGACTTCAGACCGTTTAGGCCCAGGGAAGATGGAGCTTGGTCTTGGAATAGTAAGTTCCTTCTTAGGCACAAGGGTACTAATGATTGATATTAGCAATGGGGAAGAAGTTGATAAGTCAAGCTTTACTAGATGAAACATGTCATATTACATTCATGTTTTGGAGACATGATAATCCTGTAATTTACCTTGGGGGTGCTGTGAATGCCGTTCATATCATTTCTGGTTATAGCATTTCTACACTCGATGTTGCTTTTCAATAGTAGAATTGGTTGGGTCTCTTCAAATGTGTCTGTGCTACAGTTGGAACTTCCAAGGTCTAAGTGCTGGCAGACTTCTTAGAATTCTGTAATCTTCAGTTATGTATTATCAAATTGTTTGCACTGGTTTCTCCTTTTTTTCAGCATGGGGAACCAGGAGCTGCTGTAGCTGACCTTCAACCAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTT</genome_strand>
        <mrna_strand>ACAAAGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAG.........................................................................................CACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAG..............................................................................................................GTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCG.................................................................................................GGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAG...........................................................................................................................................................................................................................................................AACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAG...............................................................................................................................................ATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCGTTATCTGTTTGCACGTTGCCAGGACAGGTGACTTCAGACCGTTTAGGCCCAGGGAAGATGGAGCTTGGTCTTGGAATA................................................................................................................................................................................................................................................................................................................................................................CATGGGGAAACAGGAGCTGCTGTAGCTGACCTTCAA-CAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326925" ref_strand="+" ref_description="SGN-E326925 [cTOC-18-D21]">
      <seq>aacaattgaagtctactctccccacacctacaaagccctcagcacaattatccgatggattttcagagcaaaaaactcatcaacgaccccaatgatgttgtgacagagttcattgagggacttattgagaattatccagggttgcagtatctggatggtttcccagaggttaaggtcgtcttgcgtgctgatgtttctggtgcaaaatatgacaaagttgccatcatatcaggtggtggaagtggccatgagcctgctcatgctggatttgttggagaagggatgctgactgcagctatctgtggggacgtttttgcctctccaaatgttgattcaattcttgcgggcatacgagctgtcacaggtcccatggggtgccttcttattgtcaagaactatactggtgatcgactgaattttggtttggctgctgaacaagcaaaatctgaaggttataaagtcgagatggtaatcgtcggtgatgactgtgctttaccacctccaagaggcattgctggccgaagagggttggcagggacgcttcttgttcacaaggttgccggagctgcagcagcttgtggtcttccccttgctgacngtgcagctgaaagcaaacgtgcatcagaaatggttgggancatgggcngtgcgttatctgtttgcacgttgccagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40603" stop="35306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40303" g_stop="40262" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40261" i_stop="40173" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40172" g_stop="40121" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="94" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40120" i_stop="38589" i_length="1532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38588" g_stop="38515" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="168" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38514" i_stop="38405" i_length="110">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38404" g_stop="38341" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="232" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38340" i_stop="37585" i_length="756">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37584" g_stop="37472" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="345" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37471" i_stop="37375" i_length="97">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37374" g_stop="37327" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="393" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37326" i_stop="37076" i_length="251">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="37075" g_stop="37004" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="465" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="37003" i_stop="36861" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="36860" g_stop="36771" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="555" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="36770" i_stop="35725" i_length="1046">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="35724" g_stop="35606" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="674" r_length="119" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E326925" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40303" e_stop="40262"/>
          <exon e_start="40172" e_stop="40121"/>
          <exon e_start="38588" e_stop="38515"/>
          <exon e_start="38404" e_stop="38341"/>
          <exon e_start="37584" e_stop="37472"/>
          <exon e_start="37374" e_stop="37327"/>
          <exon e_start="37075" e_stop="37004"/>
          <exon e_start="36860" e_stop="36771"/>
          <exon e_start="35724" e_stop="35606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAGGTTTTTCTTTCTTCTCAAAGAAGACACTTCACTTTTTTTTCTCTTTCTCTTTGAATTTTTTCTAATTTGTATCGCCTCTGTAAATGCAGCACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATGGTAACTGAAACCCCTAAAAATTGCTCTTATCGTTTTTACTTTGTTCTTCTTTCTCAATTGGATTGTTTATTGGATGTTGATGTGACAGATTGTTTATGTGCATTGCTTGTCATGTTCGTTGAATTGAAAGATGAGATTTTGTATAATTTGAGAAAGGGATTTTTTTAATCAATCGAGTTGTTTGAGTATATACGATCCTTTGTGGAAGTAGAAAAGAAAAAGAATTGACATTAGTGTTTTGTCTTGTTGGAAATGAAGGGAAGTCAAATATAGGAATAAAAAAGATTTAGTTTTAGGTATTAGGTAGAACTACTTATTTGCTATGCTTATCATACCAAACCTAAAGTAAGAGCATATGTGTAGAAAGGAGAAAAGTGTTTTGTTTTGATAACTGTGTTGTCCGGTTTCCGGTTTCCATTGTCTAGGACAACTTACCCTCAGTTAGACTAATTACACGGGGTACTAGCTAATGCGTAATAACACATATATCGATTAACTCTGTCCACCGCGGTATGGATAGAGGGGAAGAAATCGCCTAGTGCTTTTTGCCTAGGGATTTGAACATGAGAATTCATGCTTCTCAATTCACTTCGTCAACCACTAGGTCACATCTTTGGACGCGCCTTTTCGCTTCTAGAAATCTAGAACATTTATGGACCAATGTAAAAAAAAGAAATTCAACATTTTGACAGTAGCGAGGAGAAGGAAAGGAGTTGAAAGGGGCATGTATCCTTTTTTTTTTCTAAAGAAAGAGGGCTACTTCACGAGTCGCTTCTAATAATTGAAAAGGTTCACAACTAGTTCAGTCTATAGTGACAAAGGGAATGTTTCTGCCGGAGCCATGGAAAAAAGTATTCACTCCTGCTTACAGCACCTTCTTCACTCGTCTCGCTACTTCAGAACTGTTCAGCGGACACGTGGAGTCAAATGCAAACCATTTGTGGGAATTTGAGAACTTTCTCTTTTATCTCTTTCTCCTTGCTGGAAGGCTGTTTATGAGCGGAAGGGAAGTAGAGGTAGAGGGTCCGAAGGAGAGAGGAGATCTCTGCTATTATCGTTAATTAGGTGTGCCTCCAGATCCGAATGTATACCCTAGGCCAAGGGGTGCGATCACTTACAATGATCGGAGGCAGGTCAGGGGCTGGCGGATGCCCCCAGCTTCTTAAGTTTGGGAATTCCAAATGTTCTGGCACTTAATTTACATTAAAAAATGAATTAGTGTGGTAATGAAATGGGCCTGAATATGAAAGACTGGATGTATAAGGTTCACGTAGCTGATCAGAACTAATTTGGAATTGAGATCTAGTTGAATGACATCATATTCTGTTTCAATAGAAATGTATGTACATTAATATTTTCCTTATCAAAATTAATAAAAGAAATGTATGTACACTTTTGTGTGTCATATGTATGTGGCAGAATTAAATGTTATAGAGCTTTGTGAAGCTTATAATAGGTACTGTAGGTCTTATGTTATGTATGTAAATCCTAATAATTATCTGCTGTAGAGACTGAAGTGCAATGATTTGCAGATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAGGTGATCTGCCTTCAAATACTTTGTTGACTTTTTTGTTTACATGTCTCTCTACTAAGATAATATGTGTTGCAAGTTGGTTGTAACATGTTATCTTCTGTGCTGAACGCCAGGTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAGGTTTCTTCAATTTGAACTGTGTTTCATGTCTATATTTCAACACTGGAGTTTGCGTTTCAGTGGTAGCAATAATAATTTGGCATTCAGAGTGTCATACACAAGTTAGAAAAAGATCAAGCTTGACAAACTAATCAATCTGTATAATAGTGAAACTGGTTCTTATAATCAGTTAATACTATAGGTCTTGTATGCATTCCTTGCTCACCTCCTCTGAAAGATAATATCAGTTGCGTATGAGATTCTGCTGCAGTTTTGTGTTTAAAACTAAATACAGTTTTCAGTAGTTCCTTTATATGCAATGACTAATCATTTTCTGTTTCATGGGGTGATAATTTTATCAATGTGGTTCAGATCTTCCCATAAAGAAGTGGTATAGAACGTAAAAGAAATTGGTTCCCTACAAATGACTCCTAAACATCTAACACTAACATAAACCTCACGGGTGCACCAAAACTTTTCTAGAAATAAAAGGCATGCTCCGAATGCACAAAATTGTTTTCCACTCCTTCAAGGCTGTCTTGTATATTTCCCATAAGTACCCACATATTAGCCAAAGGAGCGGCATCCCATCCTCTGCATCTTCTTTTCCTTAGCTGGACAGAACAACCTTGAACTCTAGCTGCCATTGACCACTAATTATATACGAATTTACGACTTAAAAGTGTTCTTGAGAATCTTTAACTTGGGATGTATCTTTGGAACTTCAGTGAAGTGAAGTGCAGTTTAACCTGGTATCTTGGTACTTCTATAACTTAGGTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCGGTATGATATGCTATTAAGTATTACCCCCTCTGTTAGCATGTAGACATATATAAATTCTTCCCTATTTATGTCTGTCTACTGACCTGATTCAATTTAGGGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAGGTACCACTTATCCTAGCTGTTAATTTTATTCCTACCCTTGTCTAGTTTTACCAGTTAGGTTTAATGGGGTTGACAGTGCACATAAAGGATCACCAATTATCATCCTACTTTTGGATATTTACTGTTGAAAGAAAGATGCGGCGGATTGCTGTTACATTCTTCATTTATGGTTAATAATTTATAACTCATAATGAAGTCATTTCATGATTTGCTTACATTTCATGATTACAATGCGCTTTGGTTCTTTACAGAACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAGGTATCATTGTGATATCAGTATAATTAATTTGTTGCTATTTATTATTTTTAATATGATGACAATGATTGCAGTAGCCAAGTAATCATCAAAAACTGGCAGAAAGTACTCACTGATATACATGCATATATTTTTCTTTATCCCAGATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAGGTTCACAATCTCTATCTGCGTGCATGTCTTTTAGATTTCATTTGAATGGATATATTTGACTTCAGTCATCACTGATTGAAGCTTTTACAATTTTCCTCTCAATTCAAAACAAAATTTTTCCTTTTGATACCACCTACACAATATATTGGAGTTCTATGTGTTTTGTGTAATATATCTGCTTCTCTTTCCTTTAGTTCAAAGTGCATTCACATATTTTTATGGGGCCTCCTATTAAATCCATTGAGTTTCATATTAGTGTGGCACAATGTTTGATAGAACAATATAATTCATTTTACTGTGCCACATTACATAATGTTGTTCCAAGGTCACAAGAAACAATAATATTAATTATCTCTTTGGTGTTCTTTACTTTTCAATGATACATAAGAGAACTATTAGTTACCAGTTTAAAAAAAAAATGTAAGAGAACTATCTCTGATCATTTGAGTGACAACATTTTCAGCTATTTAAAATGCATACTGAGAAAGCTGGTAATTTCAACGTTTTGAGACAAATAGTACTTTACTAAAAAACCCAGCTCCTAAAAGCTGGCAAATCGTACTAAAGTAAATTAATATATACAGATATTTGTTGGAAATTCTTACTTTGTACCTACAGCAACAAATATATTTTTTATCAAGGCGATTCTAGGTGTTACATGTCCATCATCCTATGTGTTCACATGTTTCTTTATTTCTACTTATGGTGTATCTGTGTCTGTTTGTTTTTTCGGGATGGTGGGTGGTTGGGGTCAAATACCCCAATTATCTGAAGGGCACCAAATTTTCATGGTCTTTTGACAAGTTGTTTTTTCAATGCTCTGTTATAGAGGGTACCTGGAATATTGTTTTGCTTCTTATGCAGAACTATCCATATTTACAAAATCTTTTCTGCTTCATTGTTGAATTCAAATTTATGAGACACTGGCTAGTCTGTGTAGCAATCACTTTACCTATTTGTCTCGCTGCATGTTTGGTTGAAGTTCACAGATATTATTGGTTTCAGTTGCTTTCCAATGTGTCTTTTCTGAATTTCACTTACTTCAGGTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCGTTATCTGTTTGCACGTTGCCAGG</genome_strand>
        <mrna_strand>AACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAG.........................................................................................CACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAG..............................................................................................................GTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCG.................................................................................................GGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAG...........................................................................................................................................................................................................................................................AACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAG...............................................................................................................................................ATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACNGTGCAGCTGAAAGCAAACGTGCATCAGAAATGGTTGGGANCATGGGCNGTGCGTTATCTGTTTGCACGTTGCCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202842" ref_strand="+" ref_description="SGN-E202842 [cLEB-1-I20]">
      <seq>gcacgagaagcattcaacaattgaagtctactctccccacacctacaaagccctcagcacaattatccgatggattttcagagcaaaaaactcatcaacgaccccaatgatgttgtgacagagttcattgagggacttattgagaattatccagggttgcagtatctggatggtttcccagaggttaaggtcgtcttgcgtgctgatgtttctggtgcaaaatatgacaaagttgccatcatatcaggtggtggaagtggccatgagcctgctcatgctggatttgttggagaagggatgctgactgcagctatctgtggggacgtttttgcctctccaaatgttgattcaattcttgcgggcatacgagctgtcacaggtcccatggggtgccttcttattgtcaagaactatactggtgatcgactgaattttggtttggctgctgaacaagcaaaatctgaaggttataaagtcgagatggtaatcgtcggtgatgactgtgctttaccacctccaagaggcattgctggccgaagagggttggcagggacgcttcttgttcacaaggttgccggagctgcagcagcttgtggtcttccccttgctgacgttgcagctgaagccaaacgtgcatcagaaatggttgggacaatgggcgttgcgttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40616" stop="35324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40318" g_stop="40262" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40261" i_stop="40173" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40172" g_stop="40121" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="109" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40120" i_stop="38589" i_length="1532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38588" g_stop="38515" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="183" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38514" i_stop="38405" i_length="110">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38404" g_stop="38341" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="247" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38340" i_stop="37585" i_length="756">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37584" g_stop="37472" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="360" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37471" i_stop="37375" i_length="97">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37374" g_stop="37327" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="408" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37326" i_stop="37076" i_length="251">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="37075" g_stop="37004" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="480" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="37003" i_stop="36861" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="36860" g_stop="36771" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="570" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="36770" i_stop="35725" i_length="1046">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="35724" g_stop="35624" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="671" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E202842" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40318" e_stop="40262"/>
          <exon e_start="40172" e_stop="40121"/>
          <exon e_start="38588" e_stop="38515"/>
          <exon e_start="38404" e_stop="38341"/>
          <exon e_start="37584" e_stop="37472"/>
          <exon e_start="37374" e_stop="37327"/>
          <exon e_start="37075" e_stop="37004"/>
          <exon e_start="36860" e_stop="36771"/>
          <exon e_start="35724" e_stop="35624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGACAAAGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAGGTTTTTCTTTCTTCTCAAAGAAGACACTTCACTTTTTTTTCTCTTTCTCTTTGAATTTTTTCTAATTTGTATCGCCTCTGTAAATGCAGCACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATGGTAACTGAAACCCCTAAAAATTGCTCTTATCGTTTTTACTTTGTTCTTCTTTCTCAATTGGATTGTTTATTGGATGTTGATGTGACAGATTGTTTATGTGCATTGCTTGTCATGTTCGTTGAATTGAAAGATGAGATTTTGTATAATTTGAGAAAGGGATTTTTTTAATCAATCGAGTTGTTTGAGTATATACGATCCTTTGTGGAAGTAGAAAAGAAAAAGAATTGACATTAGTGTTTTGTCTTGTTGGAAATGAAGGGAAGTCAAATATAGGAATAAAAAAGATTTAGTTTTAGGTATTAGGTAGAACTACTTATTTGCTATGCTTATCATACCAAACCTAAAGTAAGAGCATATGTGTAGAAAGGAGAAAAGTGTTTTGTTTTGATAACTGTGTTGTCCGGTTTCCGGTTTCCATTGTCTAGGACAACTTACCCTCAGTTAGACTAATTACACGGGGTACTAGCTAATGCGTAATAACACATATATCGATTAACTCTGTCCACCGCGGTATGGATAGAGGGGAAGAAATCGCCTAGTGCTTTTTGCCTAGGGATTTGAACATGAGAATTCATGCTTCTCAATTCACTTCGTCAACCACTAGGTCACATCTTTGGACGCGCCTTTTCGCTTCTAGAAATCTAGAACATTTATGGACCAATGTAAAAAAAAGAAATTCAACATTTTGACAGTAGCGAGGAGAAGGAAAGGAGTTGAAAGGGGCATGTATCCTTTTTTTTTTCTAAAGAAAGAGGGCTACTTCACGAGTCGCTTCTAATAATTGAAAAGGTTCACAACTAGTTCAGTCTATAGTGACAAAGGGAATGTTTCTGCCGGAGCCATGGAAAAAAGTATTCACTCCTGCTTACAGCACCTTCTTCACTCGTCTCGCTACTTCAGAACTGTTCAGCGGACACGTGGAGTCAAATGCAAACCATTTGTGGGAATTTGAGAACTTTCTCTTTTATCTCTTTCTCCTTGCTGGAAGGCTGTTTATGAGCGGAAGGGAAGTAGAGGTAGAGGGTCCGAAGGAGAGAGGAGATCTCTGCTATTATCGTTAATTAGGTGTGCCTCCAGATCCGAATGTATACCCTAGGCCAAGGGGTGCGATCACTTACAATGATCGGAGGCAGGTCAGGGGCTGGCGGATGCCCCCAGCTTCTTAAGTTTGGGAATTCCAAATGTTCTGGCACTTAATTTACATTAAAAAATGAATTAGTGTGGTAATGAAATGGGCCTGAATATGAAAGACTGGATGTATAAGGTTCACGTAGCTGATCAGAACTAATTTGGAATTGAGATCTAGTTGAATGACATCATATTCTGTTTCAATAGAAATGTATGTACATTAATATTTTCCTTATCAAAATTAATAAAAGAAATGTATGTACACTTTTGTGTGTCATATGTATGTGGCAGAATTAAATGTTATAGAGCTTTGTGAAGCTTATAATAGGTACTGTAGGTCTTATGTTATGTATGTAAATCCTAATAATTATCTGCTGTAGAGACTGAAGTGCAATGATTTGCAGATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAGGTGATCTGCCTTCAAATACTTTGTTGACTTTTTTGTTTACATGTCTCTCTACTAAGATAATATGTGTTGCAAGTTGGTTGTAACATGTTATCTTCTGTGCTGAACGCCAGGTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAGGTTTCTTCAATTTGAACTGTGTTTCATGTCTATATTTCAACACTGGAGTTTGCGTTTCAGTGGTAGCAATAATAATTTGGCATTCAGAGTGTCATACACAAGTTAGAAAAAGATCAAGCTTGACAAACTAATCAATCTGTATAATAGTGAAACTGGTTCTTATAATCAGTTAATACTATAGGTCTTGTATGCATTCCTTGCTCACCTCCTCTGAAAGATAATATCAGTTGCGTATGAGATTCTGCTGCAGTTTTGTGTTTAAAACTAAATACAGTTTTCAGTAGTTCCTTTATATGCAATGACTAATCATTTTCTGTTTCATGGGGTGATAATTTTATCAATGTGGTTCAGATCTTCCCATAAAGAAGTGGTATAGAACGTAAAAGAAATTGGTTCCCTACAAATGACTCCTAAACATCTAACACTAACATAAACCTCACGGGTGCACCAAAACTTTTCTAGAAATAAAAGGCATGCTCCGAATGCACAAAATTGTTTTCCACTCCTTCAAGGCTGTCTTGTATATTTCCCATAAGTACCCACATATTAGCCAAAGGAGCGGCATCCCATCCTCTGCATCTTCTTTTCCTTAGCTGGACAGAACAACCTTGAACTCTAGCTGCCATTGACCACTAATTATATACGAATTTACGACTTAAAAGTGTTCTTGAGAATCTTTAACTTGGGATGTATCTTTGGAACTTCAGTGAAGTGAAGTGCAGTTTAACCTGGTATCTTGGTACTTCTATAACTTAGGTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCGGTATGATATGCTATTAAGTATTACCCCCTCTGTTAGCATGTAGACATATATAAATTCTTCCCTATTTATGTCTGTCTACTGACCTGATTCAATTTAGGGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAGGTACCACTTATCCTAGCTGTTAATTTTATTCCTACCCTTGTCTAGTTTTACCAGTTAGGTTTAATGGGGTTGACAGTGCACATAAAGGATCACCAATTATCATCCTACTTTTGGATATTTACTGTTGAAAGAAAGATGCGGCGGATTGCTGTTACATTCTTCATTTATGGTTAATAATTTATAACTCATAATGAAGTCATTTCATGATTTGCTTACATTTCATGATTACAATGCGCTTTGGTTCTTTACAGAACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAGGTATCATTGTGATATCAGTATAATTAATTTGTTGCTATTTATTATTTTTAATATGATGACAATGATTGCAGTAGCCAAGTAATCATCAAAAACTGGCAGAAAGTACTCACTGATATACATGCATATATTTTTCTTTATCCCAGATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAGGTTCACAATCTCTATCTGCGTGCATGTCTTTTAGATTTCATTTGAATGGATATATTTGACTTCAGTCATCACTGATTGAAGCTTTTACAATTTTCCTCTCAATTCAAAACAAAATTTTTCCTTTTGATACCACCTACACAATATATTGGAGTTCTATGTGTTTTGTGTAATATATCTGCTTCTCTTTCCTTTAGTTCAAAGTGCATTCACATATTTTTATGGGGCCTCCTATTAAATCCATTGAGTTTCATATTAGTGTGGCACAATGTTTGATAGAACAATATAATTCATTTTACTGTGCCACATTACATAATGTTGTTCCAAGGTCACAAGAAACAATAATATTAATTATCTCTTTGGTGTTCTTTACTTTTCAATGATACATAAGAGAACTATTAGTTACCAGTTTAAAAAAAAAATGTAAGAGAACTATCTCTGATCATTTGAGTGACAACATTTTCAGCTATTTAAAATGCATACTGAGAAAGCTGGTAATTTCAACGTTTTGAGACAAATAGTACTTTACTAAAAAACCCAGCTCCTAAAAGCTGGCAAATCGTACTAAAGTAAATTAATATATACAGATATTTGTTGGAAATTCTTACTTTGTACCTACAGCAACAAATATATTTTTTATCAAGGCGATTCTAGGTGTTACATGTCCATCATCCTATGTGTTCACATGTTTCTTTATTTCTACTTATGGTGTATCTGTGTCTGTTTGTTTTTTCGGGATGGTGGGTGGTTGGGGTCAAATACCCCAATTATCTGAAGGGCACCAAATTTTCATGGTCTTTTGACAAGTTGTTTTTTCAATGCTCTGTTATAGAGGGTACCTGGAATATTGTTTTGCTTCTTATGCAGAACTATCCATATTTACAAAATCTTTTCTGCTTCATTGTTGAATTCAAATTTATGAGACACTGGCTAGTCTGTGTAGCAATCACTTTACCTATTTGTCTCGCTGCATGTTTGGTTGAAGTTCACAGATATTATTGGTTTCAGTTGCTTTCCAATGTGTCTTTTCTGAATTTCACTTACTTCAGGTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCGTTATC</genome_strand>
        <mrna_strand>GCACGAGAAGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAG.........................................................................................CACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAG..............................................................................................................GTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCG.................................................................................................GGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAG...........................................................................................................................................................................................................................................................AACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAG...............................................................................................................................................ATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCGTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314348" ref_strand="+" ref_description="SGN-E314348 [cTOA-21-H10]">
      <seq>agcattcaacaattgaagtctactctccccacacctacaaagccctcagcacaattatccgatggattttcagagcaaaaaactcatcaacgaccccaatgatgttgtgacagagttcattgagggacttattgagaattatccagggttgcagtatctggatggtttcccagaggttaaggtcgtcttgcgtgctgatgtttctggtgcaaaatatgacaaagttgccatcatatcaggtggtggaagtggccatgagcctgctcatgctggatttgttggagaagggatgctgactgcagctatctgtggggacgtttttgcctctccaaatgttgattcaattcttgcgggcatacgagctgtcacaggtcccatggggtgccttcttattgtcaagaactatactggtgatcgactgaattttggtttggctgctgaacaagcaaaatctgaaggttataaagtcgagatggtaatcgtcggtgatgactgtgctttaccacctccaagaggcattgctggccgaagaaggttggcagggacgcttcttgttcacaaggttgccggagctgcagcagcttgtggtcttccccttgctgacgttgcagctgaaagcaaacgtgcatcagaaatggttgggacaatgggcgttgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40610" stop="35329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40310" g_stop="40262" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40261" i_stop="40173" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40172" g_stop="40121" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="101" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40120" i_stop="38589" i_length="1532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38588" g_stop="38515" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="175" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38514" i_stop="38405" i_length="110">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38404" g_stop="38341" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="239" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38340" i_stop="37585" i_length="756">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37584" g_stop="37472" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="352" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37471" i_stop="37375" i_length="97">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37374" g_stop="37327" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="400" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37326" i_stop="37076" i_length="251">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="37075" g_stop="37004" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="472" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="37003" i_stop="36861" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="36860" g_stop="36771" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="562" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="36770" i_stop="35725" i_length="1046">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="35724" g_stop="35629" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="658" r_length="96" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E314348" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40310" e_stop="40262"/>
          <exon e_start="40172" e_stop="40121"/>
          <exon e_start="38588" e_stop="38515"/>
          <exon e_start="38404" e_stop="38341"/>
          <exon e_start="37584" e_stop="37472"/>
          <exon e_start="37374" e_stop="37327"/>
          <exon e_start="37075" e_stop="37004"/>
          <exon e_start="36860" e_stop="36771"/>
          <exon e_start="35724" e_stop="35629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAGGTTTTTCTTTCTTCTCAAAGAAGACACTTCACTTTTTTTTCTCTTTCTCTTTGAATTTTTTCTAATTTGTATCGCCTCTGTAAATGCAGCACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATGGTAACTGAAACCCCTAAAAATTGCTCTTATCGTTTTTACTTTGTTCTTCTTTCTCAATTGGATTGTTTATTGGATGTTGATGTGACAGATTGTTTATGTGCATTGCTTGTCATGTTCGTTGAATTGAAAGATGAGATTTTGTATAATTTGAGAAAGGGATTTTTTTAATCAATCGAGTTGTTTGAGTATATACGATCCTTTGTGGAAGTAGAAAAGAAAAAGAATTGACATTAGTGTTTTGTCTTGTTGGAAATGAAGGGAAGTCAAATATAGGAATAAAAAAGATTTAGTTTTAGGTATTAGGTAGAACTACTTATTTGCTATGCTTATCATACCAAACCTAAAGTAAGAGCATATGTGTAGAAAGGAGAAAAGTGTTTTGTTTTGATAACTGTGTTGTCCGGTTTCCGGTTTCCATTGTCTAGGACAACTTACCCTCAGTTAGACTAATTACACGGGGTACTAGCTAATGCGTAATAACACATATATCGATTAACTCTGTCCACCGCGGTATGGATAGAGGGGAAGAAATCGCCTAGTGCTTTTTGCCTAGGGATTTGAACATGAGAATTCATGCTTCTCAATTCACTTCGTCAACCACTAGGTCACATCTTTGGACGCGCCTTTTCGCTTCTAGAAATCTAGAACATTTATGGACCAATGTAAAAAAAAGAAATTCAACATTTTGACAGTAGCGAGGAGAAGGAAAGGAGTTGAAAGGGGCATGTATCCTTTTTTTTTTCTAAAGAAAGAGGGCTACTTCACGAGTCGCTTCTAATAATTGAAAAGGTTCACAACTAGTTCAGTCTATAGTGACAAAGGGAATGTTTCTGCCGGAGCCATGGAAAAAAGTATTCACTCCTGCTTACAGCACCTTCTTCACTCGTCTCGCTACTTCAGAACTGTTCAGCGGACACGTGGAGTCAAATGCAAACCATTTGTGGGAATTTGAGAACTTTCTCTTTTATCTCTTTCTCCTTGCTGGAAGGCTGTTTATGAGCGGAAGGGAAGTAGAGGTAGAGGGTCCGAAGGAGAGAGGAGATCTCTGCTATTATCGTTAATTAGGTGTGCCTCCAGATCCGAATGTATACCCTAGGCCAAGGGGTGCGATCACTTACAATGATCGGAGGCAGGTCAGGGGCTGGCGGATGCCCCCAGCTTCTTAAGTTTGGGAATTCCAAATGTTCTGGCACTTAATTTACATTAAAAAATGAATTAGTGTGGTAATGAAATGGGCCTGAATATGAAAGACTGGATGTATAAGGTTCACGTAGCTGATCAGAACTAATTTGGAATTGAGATCTAGTTGAATGACATCATATTCTGTTTCAATAGAAATGTATGTACATTAATATTTTCCTTATCAAAATTAATAAAAGAAATGTATGTACACTTTTGTGTGTCATATGTATGTGGCAGAATTAAATGTTATAGAGCTTTGTGAAGCTTATAATAGGTACTGTAGGTCTTATGTTATGTATGTAAATCCTAATAATTATCTGCTGTAGAGACTGAAGTGCAATGATTTGCAGATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAGGTGATCTGCCTTCAAATACTTTGTTGACTTTTTTGTTTACATGTCTCTCTACTAAGATAATATGTGTTGCAAGTTGGTTGTAACATGTTATCTTCTGTGCTGAACGCCAGGTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAGGTTTCTTCAATTTGAACTGTGTTTCATGTCTATATTTCAACACTGGAGTTTGCGTTTCAGTGGTAGCAATAATAATTTGGCATTCAGAGTGTCATACACAAGTTAGAAAAAGATCAAGCTTGACAAACTAATCAATCTGTATAATAGTGAAACTGGTTCTTATAATCAGTTAATACTATAGGTCTTGTATGCATTCCTTGCTCACCTCCTCTGAAAGATAATATCAGTTGCGTATGAGATTCTGCTGCAGTTTTGTGTTTAAAACTAAATACAGTTTTCAGTAGTTCCTTTATATGCAATGACTAATCATTTTCTGTTTCATGGGGTGATAATTTTATCAATGTGGTTCAGATCTTCCCATAAAGAAGTGGTATAGAACGTAAAAGAAATTGGTTCCCTACAAATGACTCCTAAACATCTAACACTAACATAAACCTCACGGGTGCACCAAAACTTTTCTAGAAATAAAAGGCATGCTCCGAATGCACAAAATTGTTTTCCACTCCTTCAAGGCTGTCTTGTATATTTCCCATAAGTACCCACATATTAGCCAAAGGAGCGGCATCCCATCCTCTGCATCTTCTTTTCCTTAGCTGGACAGAACAACCTTGAACTCTAGCTGCCATTGACCACTAATTATATACGAATTTACGACTTAAAAGTGTTCTTGAGAATCTTTAACTTGGGATGTATCTTTGGAACTTCAGTGAAGTGAAGTGCAGTTTAACCTGGTATCTTGGTACTTCTATAACTTAGGTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCGGTATGATATGCTATTAAGTATTACCCCCTCTGTTAGCATGTAGACATATATAAATTCTTCCCTATTTATGTCTGTCTACTGACCTGATTCAATTTAGGGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAGGTACCACTTATCCTAGCTGTTAATTTTATTCCTACCCTTGTCTAGTTTTACCAGTTAGGTTTAATGGGGTTGACAGTGCACATAAAGGATCACCAATTATCATCCTACTTTTGGATATTTACTGTTGAAAGAAAGATGCGGCGGATTGCTGTTACATTCTTCATTTATGGTTAATAATTTATAACTCATAATGAAGTCATTTCATGATTTGCTTACATTTCATGATTACAATGCGCTTTGGTTCTTTACAGAACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAGGTATCATTGTGATATCAGTATAATTAATTTGTTGCTATTTATTATTTTTAATATGATGACAATGATTGCAGTAGCCAAGTAATCATCAAAAACTGGCAGAAAGTACTCACTGATATACATGCATATATTTTTCTTTATCCCAGATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAGGTTCACAATCTCTATCTGCGTGCATGTCTTTTAGATTTCATTTGAATGGATATATTTGACTTCAGTCATCACTGATTGAAGCTTTTACAATTTTCCTCTCAATTCAAAACAAAATTTTTCCTTTTGATACCACCTACACAATATATTGGAGTTCTATGTGTTTTGTGTAATATATCTGCTTCTCTTTCCTTTAGTTCAAAGTGCATTCACATATTTTTATGGGGCCTCCTATTAAATCCATTGAGTTTCATATTAGTGTGGCACAATGTTTGATAGAACAATATAATTCATTTTACTGTGCCACATTACATAATGTTGTTCCAAGGTCACAAGAAACAATAATATTAATTATCTCTTTGGTGTTCTTTACTTTTCAATGATACATAAGAGAACTATTAGTTACCAGTTTAAAAAAAAAATGTAAGAGAACTATCTCTGATCATTTGAGTGACAACATTTTCAGCTATTTAAAATGCATACTGAGAAAGCTGGTAATTTCAACGTTTTGAGACAAATAGTACTTTACTAAAAAACCCAGCTCCTAAAAGCTGGCAAATCGTACTAAAGTAAATTAATATATACAGATATTTGTTGGAAATTCTTACTTTGTACCTACAGCAACAAATATATTTTTTATCAAGGCGATTCTAGGTGTTACATGTCCATCATCCTATGTGTTCACATGTTTCTTTATTTCTACTTATGGTGTATCTGTGTCTGTTTGTTTTTTCGGGATGGTGGGTGGTTGGGGTCAAATACCCCAATTATCTGAAGGGCACCAAATTTTCATGGTCTTTTGACAAGTTGTTTTTTCAATGCTCTGTTATAGAGGGTACCTGGAATATTGTTTTGCTTCTTATGCAGAACTATCCATATTTACAAAATCTTTTCTGCTTCATTGTTGAATTCAAATTTATGAGACACTGGCTAGTCTGTGTAGCAATCACTTTACCTATTTGTCTCGCTGCATGTTTGGTTGAAGTTCACAGATATTATTGGTTTCAGTTGCTTTCCAATGTGTCTTTTCTGAATTTCACTTACTTCAGGTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCG</genome_strand>
        <mrna_strand>AGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAG.........................................................................................CACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAG..............................................................................................................GTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCG.................................................................................................GGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAG...........................................................................................................................................................................................................................................................AACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAG...............................................................................................................................................ATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAAGGTTGGCAGGGACGCTTCTTGTTCACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAAGCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328534" ref_strand="+" ref_description="SGN-E328534 [cTOC-23-G8]">
      <seq>aacaattgaagtctactctccccacacctacaaagccctcagcacaattatccgatggattttcagagcaaaaaactcatcaacgaccccaatgatgttgtgacagagttcattgagggacttattgagaattatccagggttgcagtatctggatggtttcccagaggttaaggtcgtcttgcgtgctgatgtttctggtgcaaaatatgacaaagttgccatcatatcaggtggtggaagtggccatgagcctgctcatgctggatttgttggagaagggatgctgactgcagctatctgtggggacgtttttgcctctccaaatgttgattcaattcttgcgggcatacgagctgtcacaggtcccatggggtgccttcttattgtcaagaactatactggtgatcgactgaattttggtttggctgctgaacaagcaaaatctgaaggttataaagtcgagatggtaatcgtcggtgatgactgtgctttaccacctccaagaggcattgctggccgaagagggttggcagggacgcttcttgntcacaaggttgccggagctgcagcagcttgtggtcttccccttgctgacgttgcagctgaaagcaaacgtgcatcagaaatggttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40603" stop="35344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40303" g_stop="40262" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40261" i_stop="40173" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40172" g_stop="40121" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="94" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40120" i_stop="38589" i_length="1532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38588" g_stop="38515" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="168" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38514" i_stop="38405" i_length="110">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38404" g_stop="38341" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="232" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38340" i_stop="37585" i_length="756">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37584" g_stop="37472" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="345" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37471" i_stop="37375" i_length="97">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37374" g_stop="37327" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="393" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37326" i_stop="37076" i_length="251">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="37075" g_stop="37004" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="465" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="37003" i_stop="36861" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="36860" g_stop="36771" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="555" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="36770" i_stop="35725" i_length="1046">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="35724" g_stop="35644" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="636" r_length="81" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E328534" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40303" e_stop="40262"/>
          <exon e_start="40172" e_stop="40121"/>
          <exon e_start="38588" e_stop="38515"/>
          <exon e_start="38404" e_stop="38341"/>
          <exon e_start="37584" e_stop="37472"/>
          <exon e_start="37374" e_stop="37327"/>
          <exon e_start="37075" e_stop="37004"/>
          <exon e_start="36860" e_stop="36771"/>
          <exon e_start="35724" e_stop="35644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAGGTTTTTCTTTCTTCTCAAAGAAGACACTTCACTTTTTTTTCTCTTTCTCTTTGAATTTTTTCTAATTTGTATCGCCTCTGTAAATGCAGCACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATGGTAACTGAAACCCCTAAAAATTGCTCTTATCGTTTTTACTTTGTTCTTCTTTCTCAATTGGATTGTTTATTGGATGTTGATGTGACAGATTGTTTATGTGCATTGCTTGTCATGTTCGTTGAATTGAAAGATGAGATTTTGTATAATTTGAGAAAGGGATTTTTTTAATCAATCGAGTTGTTTGAGTATATACGATCCTTTGTGGAAGTAGAAAAGAAAAAGAATTGACATTAGTGTTTTGTCTTGTTGGAAATGAAGGGAAGTCAAATATAGGAATAAAAAAGATTTAGTTTTAGGTATTAGGTAGAACTACTTATTTGCTATGCTTATCATACCAAACCTAAAGTAAGAGCATATGTGTAGAAAGGAGAAAAGTGTTTTGTTTTGATAACTGTGTTGTCCGGTTTCCGGTTTCCATTGTCTAGGACAACTTACCCTCAGTTAGACTAATTACACGGGGTACTAGCTAATGCGTAATAACACATATATCGATTAACTCTGTCCACCGCGGTATGGATAGAGGGGAAGAAATCGCCTAGTGCTTTTTGCCTAGGGATTTGAACATGAGAATTCATGCTTCTCAATTCACTTCGTCAACCACTAGGTCACATCTTTGGACGCGCCTTTTCGCTTCTAGAAATCTAGAACATTTATGGACCAATGTAAAAAAAAGAAATTCAACATTTTGACAGTAGCGAGGAGAAGGAAAGGAGTTGAAAGGGGCATGTATCCTTTTTTTTTTCTAAAGAAAGAGGGCTACTTCACGAGTCGCTTCTAATAATTGAAAAGGTTCACAACTAGTTCAGTCTATAGTGACAAAGGGAATGTTTCTGCCGGAGCCATGGAAAAAAGTATTCACTCCTGCTTACAGCACCTTCTTCACTCGTCTCGCTACTTCAGAACTGTTCAGCGGACACGTGGAGTCAAATGCAAACCATTTGTGGGAATTTGAGAACTTTCTCTTTTATCTCTTTCTCCTTGCTGGAAGGCTGTTTATGAGCGGAAGGGAAGTAGAGGTAGAGGGTCCGAAGGAGAGAGGAGATCTCTGCTATTATCGTTAATTAGGTGTGCCTCCAGATCCGAATGTATACCCTAGGCCAAGGGGTGCGATCACTTACAATGATCGGAGGCAGGTCAGGGGCTGGCGGATGCCCCCAGCTTCTTAAGTTTGGGAATTCCAAATGTTCTGGCACTTAATTTACATTAAAAAATGAATTAGTGTGGTAATGAAATGGGCCTGAATATGAAAGACTGGATGTATAAGGTTCACGTAGCTGATCAGAACTAATTTGGAATTGAGATCTAGTTGAATGACATCATATTCTGTTTCAATAGAAATGTATGTACATTAATATTTTCCTTATCAAAATTAATAAAAGAAATGTATGTACACTTTTGTGTGTCATATGTATGTGGCAGAATTAAATGTTATAGAGCTTTGTGAAGCTTATAATAGGTACTGTAGGTCTTATGTTATGTATGTAAATCCTAATAATTATCTGCTGTAGAGACTGAAGTGCAATGATTTGCAGATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAGGTGATCTGCCTTCAAATACTTTGTTGACTTTTTTGTTTACATGTCTCTCTACTAAGATAATATGTGTTGCAAGTTGGTTGTAACATGTTATCTTCTGTGCTGAACGCCAGGTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAGGTTTCTTCAATTTGAACTGTGTTTCATGTCTATATTTCAACACTGGAGTTTGCGTTTCAGTGGTAGCAATAATAATTTGGCATTCAGAGTGTCATACACAAGTTAGAAAAAGATCAAGCTTGACAAACTAATCAATCTGTATAATAGTGAAACTGGTTCTTATAATCAGTTAATACTATAGGTCTTGTATGCATTCCTTGCTCACCTCCTCTGAAAGATAATATCAGTTGCGTATGAGATTCTGCTGCAGTTTTGTGTTTAAAACTAAATACAGTTTTCAGTAGTTCCTTTATATGCAATGACTAATCATTTTCTGTTTCATGGGGTGATAATTTTATCAATGTGGTTCAGATCTTCCCATAAAGAAGTGGTATAGAACGTAAAAGAAATTGGTTCCCTACAAATGACTCCTAAACATCTAACACTAACATAAACCTCACGGGTGCACCAAAACTTTTCTAGAAATAAAAGGCATGCTCCGAATGCACAAAATTGTTTTCCACTCCTTCAAGGCTGTCTTGTATATTTCCCATAAGTACCCACATATTAGCCAAAGGAGCGGCATCCCATCCTCTGCATCTTCTTTTCCTTAGCTGGACAGAACAACCTTGAACTCTAGCTGCCATTGACCACTAATTATATACGAATTTACGACTTAAAAGTGTTCTTGAGAATCTTTAACTTGGGATGTATCTTTGGAACTTCAGTGAAGTGAAGTGCAGTTTAACCTGGTATCTTGGTACTTCTATAACTTAGGTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCGGTATGATATGCTATTAAGTATTACCCCCTCTGTTAGCATGTAGACATATATAAATTCTTCCCTATTTATGTCTGTCTACTGACCTGATTCAATTTAGGGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAGGTACCACTTATCCTAGCTGTTAATTTTATTCCTACCCTTGTCTAGTTTTACCAGTTAGGTTTAATGGGGTTGACAGTGCACATAAAGGATCACCAATTATCATCCTACTTTTGGATATTTACTGTTGAAAGAAAGATGCGGCGGATTGCTGTTACATTCTTCATTTATGGTTAATAATTTATAACTCATAATGAAGTCATTTCATGATTTGCTTACATTTCATGATTACAATGCGCTTTGGTTCTTTACAGAACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAGGTATCATTGTGATATCAGTATAATTAATTTGTTGCTATTTATTATTTTTAATATGATGACAATGATTGCAGTAGCCAAGTAATCATCAAAAACTGGCAGAAAGTACTCACTGATATACATGCATATATTTTTCTTTATCCCAGATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAGGTTCACAATCTCTATCTGCGTGCATGTCTTTTAGATTTCATTTGAATGGATATATTTGACTTCAGTCATCACTGATTGAAGCTTTTACAATTTTCCTCTCAATTCAAAACAAAATTTTTCCTTTTGATACCACCTACACAATATATTGGAGTTCTATGTGTTTTGTGTAATATATCTGCTTCTCTTTCCTTTAGTTCAAAGTGCATTCACATATTTTTATGGGGCCTCCTATTAAATCCATTGAGTTTCATATTAGTGTGGCACAATGTTTGATAGAACAATATAATTCATTTTACTGTGCCACATTACATAATGTTGTTCCAAGGTCACAAGAAACAATAATATTAATTATCTCTTTGGTGTTCTTTACTTTTCAATGATACATAAGAGAACTATTAGTTACCAGTTTAAAAAAAAAATGTAAGAGAACTATCTCTGATCATTTGAGTGACAACATTTTCAGCTATTTAAAATGCATACTGAGAAAGCTGGTAATTTCAACGTTTTGAGACAAATAGTACTTTACTAAAAAACCCAGCTCCTAAAAGCTGGCAAATCGTACTAAAGTAAATTAATATATACAGATATTTGTTGGAAATTCTTACTTTGTACCTACAGCAACAAATATATTTTTTATCAAGGCGATTCTAGGTGTTACATGTCCATCATCCTATGTGTTCACATGTTTCTTTATTTCTACTTATGGTGTATCTGTGTCTGTTTGTTTTTTCGGGATGGTGGGTGGTTGGGGTCAAATACCCCAATTATCTGAAGGGCACCAAATTTTCATGGTCTTTTGACAAGTTGTTTTTTCAATGCTCTGTTATAGAGGGTACCTGGAATATTGTTTTGCTTCTTATGCAGAACTATCCATATTTACAAAATCTTTTCTGCTTCATTGTTGAATTCAAATTTATGAGACACTGGCTAGTCTGTGTAGCAATCACTTTACCTATTTGTCTCGCTGCATGTTTGGTTGAAGTTCACAGATATTATTGGTTTCAGTTGCTTTCCAATGTGTCTTTTCTGAATTTCACTTACTTCAGGTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGG</genome_strand>
        <mrna_strand>AACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAG.........................................................................................CACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAG..............................................................................................................GTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCG.................................................................................................GGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAG...........................................................................................................................................................................................................................................................AACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAG...............................................................................................................................................ATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGNTCACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAAGCAAACGTGCATCAGAAATGGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268155" ref_strand="+" ref_description="SGN-E268155 [cLEI-15-M24]">
      <seq>cgactgaattttggtttggctgctgaacaagcaaaatttgaacgttataaagtcgagatggtaatcgccggtgatgactgtgctttaccacctccaataggcattgctggcctaaaagggttggcaaggacgcttatcgttcacaaagctgccggagctgcaccagcttgcggtcttccccttgctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37360" stop="35383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37060" g_stop="37004" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37003" i_stop="36861" i_length="143">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36860" g_stop="36771" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="147" r_length="90" r_score="0.911"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36770" i_stop="35725" i_length="1046">
            <donor d_prob="0.991" d_score="0.86"/>
            <acceptor a_prob="0.997" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35724" g_stop="35683" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="189" r_length="42" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E268155" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>189</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37060" e_stop="37004"/>
          <exon e_start="36860" e_stop="36771"/>
          <exon e_start="35724" e_stop="35683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAGGTATCATTGTGATATCAGTATAATTAATTTGTTGCTATTTATTATTTTTAATATGATGACAATGATTGCAGTAGCCAAGTAATCATCAAAAACTGGCAGAAAGTACTCACTGATATACATGCATATATTTTTCTTTATCCCAGATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAGGTTCACAATCTCTATCTGCGTGCATGTCTTTTAGATTTCATTTGAATGGATATATTTGACTTCAGTCATCACTGATTGAAGCTTTTACAATTTTCCTCTCAATTCAAAACAAAATTTTTCCTTTTGATACCACCTACACAATATATTGGAGTTCTATGTGTTTTGTGTAATATATCTGCTTCTCTTTCCTTTAGTTCAAAGTGCATTCACATATTTTTATGGGGCCTCCTATTAAATCCATTGAGTTTCATATTAGTGTGGCACAATGTTTGATAGAACAATATAATTCATTTTACTGTGCCACATTACATAATGTTGTTCCAAGGTCACAAGAAACAATAATATTAATTATCTCTTTGGTGTTCTTTACTTTTCAATGATACATAAGAGAACTATTAGTTACCAGTTTAAAAAAAAAATGTAAGAGAACTATCTCTGATCATTTGAGTGACAACATTTTCAGCTATTTAAAATGCATACTGAGAAAGCTGGTAATTTCAACGTTTTGAGACAAATAGTACTTTACTAAAAAACCCAGCTCCTAAAAGCTGGCAAATCGTACTAAAGTAAATTAATATATACAGATATTTGTTGGAAATTCTTACTTTGTACCTACAGCAACAAATATATTTTTTATCAAGGCGATTCTAGGTGTTACATGTCCATCATCCTATGTGTTCACATGTTTCTTTATTTCTACTTATGGTGTATCTGTGTCTGTTTGTTTTTTCGGGATGGTGGGTGGTTGGGGTCAAATACCCCAATTATCTGAAGGGCACCAAATTTTCATGGTCTTTTGACAAGTTGTTTTTTCAATGCTCTGTTATAGAGGGTACCTGGAATATTGTTTTGCTTCTTATGCAGAACTATCCATATTTACAAAATCTTTTCTGCTTCATTGTTGAATTCAAATTTATGAGACACTGGCTAGTCTGTGTAGCAATCACTTTACCTATTTGTCTCGCTGCATGTTTGGTTGAAGTTCACAGATATTATTGGTTTCAGTTGCTTTCCAATGTGTCTTTTCTGAATTTCACTTACTTCAGGTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGAC</genome_strand>
        <mrna_strand>CGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATTTGAACGTTATAAAGTCGAG...............................................................................................................................................ATGGTAATCGCCGGTGATGACTGTGCTTTACCACCTCCAATAGGCATTGCTGGCCTAAAAGGGTTGGCAAGGACGCTTATCGTTCACAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCGGAGCTGCACCAGCTTGCGGTCTTCCCCTTGCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314387" ref_strand="+" ref_description="SGN-E314387 [cTOA-21-G10]">
      <seq>agcattcaacaattgaagtctactctccccacacctacaaagccctcagcacaattatccgatggattttcagagcaaaaaactcatcaacgaccccaatgatgttgtgacagagttcattgagggacttattgagaattatccagggttgcagtatctggatggtttcccagaggttaaggtcgtcttgcgtgctgatgtttctggtgcaaaatatgacaaagttgccatcatatcaggtggtggaagtggccatgagcctgctcatgctggatttgttggagaagggatgctgactgcagctatctgtggggacgtttttgcctctccaaatgttgattcaattcttgcgggcatacgagctgtcacaggtcccatggggtgccttcttattgtcaagaactatactggtgatcgactgaattttggtttggctgctgaacaagcaaaatctgaaggttataaagtcgagatggtaatcgtcggtgatgactgtgctttaccacctccaagaagcattgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40610" stop="36509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40310" g_stop="40262" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40261" i_stop="40173" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40172" g_stop="40121" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="101" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40120" i_stop="38589" i_length="1532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38588" g_stop="38515" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="175" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38514" i_stop="38405" i_length="110">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38404" g_stop="38341" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="239" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38340" i_stop="37585" i_length="756">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37584" g_stop="37472" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="352" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37471" i_stop="37375" i_length="97">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37374" g_stop="37327" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="400" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37326" i_stop="37076" i_length="251">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="37075" g_stop="37004" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="472" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="37003" i_stop="36861" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="36860" g_stop="36809" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="524" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E314387" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40310" e_stop="40262"/>
          <exon e_start="40172" e_stop="40121"/>
          <exon e_start="38588" e_stop="38515"/>
          <exon e_start="38404" e_stop="38341"/>
          <exon e_start="37584" e_stop="37472"/>
          <exon e_start="37374" e_stop="37327"/>
          <exon e_start="37075" e_stop="37004"/>
          <exon e_start="36860" e_stop="36809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAGGTTTTTCTTTCTTCTCAAAGAAGACACTTCACTTTTTTTTCTCTTTCTCTTTGAATTTTTTCTAATTTGTATCGCCTCTGTAAATGCAGCACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATGGTAACTGAAACCCCTAAAAATTGCTCTTATCGTTTTTACTTTGTTCTTCTTTCTCAATTGGATTGTTTATTGGATGTTGATGTGACAGATTGTTTATGTGCATTGCTTGTCATGTTCGTTGAATTGAAAGATGAGATTTTGTATAATTTGAGAAAGGGATTTTTTTAATCAATCGAGTTGTTTGAGTATATACGATCCTTTGTGGAAGTAGAAAAGAAAAAGAATTGACATTAGTGTTTTGTCTTGTTGGAAATGAAGGGAAGTCAAATATAGGAATAAAAAAGATTTAGTTTTAGGTATTAGGTAGAACTACTTATTTGCTATGCTTATCATACCAAACCTAAAGTAAGAGCATATGTGTAGAAAGGAGAAAAGTGTTTTGTTTTGATAACTGTGTTGTCCGGTTTCCGGTTTCCATTGTCTAGGACAACTTACCCTCAGTTAGACTAATTACACGGGGTACTAGCTAATGCGTAATAACACATATATCGATTAACTCTGTCCACCGCGGTATGGATAGAGGGGAAGAAATCGCCTAGTGCTTTTTGCCTAGGGATTTGAACATGAGAATTCATGCTTCTCAATTCACTTCGTCAACCACTAGGTCACATCTTTGGACGCGCCTTTTCGCTTCTAGAAATCTAGAACATTTATGGACCAATGTAAAAAAAAGAAATTCAACATTTTGACAGTAGCGAGGAGAAGGAAAGGAGTTGAAAGGGGCATGTATCCTTTTTTTTTTCTAAAGAAAGAGGGCTACTTCACGAGTCGCTTCTAATAATTGAAAAGGTTCACAACTAGTTCAGTCTATAGTGACAAAGGGAATGTTTCTGCCGGAGCCATGGAAAAAAGTATTCACTCCTGCTTACAGCACCTTCTTCACTCGTCTCGCTACTTCAGAACTGTTCAGCGGACACGTGGAGTCAAATGCAAACCATTTGTGGGAATTTGAGAACTTTCTCTTTTATCTCTTTCTCCTTGCTGGAAGGCTGTTTATGAGCGGAAGGGAAGTAGAGGTAGAGGGTCCGAAGGAGAGAGGAGATCTCTGCTATTATCGTTAATTAGGTGTGCCTCCAGATCCGAATGTATACCCTAGGCCAAGGGGTGCGATCACTTACAATGATCGGAGGCAGGTCAGGGGCTGGCGGATGCCCCCAGCTTCTTAAGTTTGGGAATTCCAAATGTTCTGGCACTTAATTTACATTAAAAAATGAATTAGTGTGGTAATGAAATGGGCCTGAATATGAAAGACTGGATGTATAAGGTTCACGTAGCTGATCAGAACTAATTTGGAATTGAGATCTAGTTGAATGACATCATATTCTGTTTCAATAGAAATGTATGTACATTAATATTTTCCTTATCAAAATTAATAAAAGAAATGTATGTACACTTTTGTGTGTCATATGTATGTGGCAGAATTAAATGTTATAGAGCTTTGTGAAGCTTATAATAGGTACTGTAGGTCTTATGTTATGTATGTAAATCCTAATAATTATCTGCTGTAGAGACTGAAGTGCAATGATTTGCAGATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAGGTGATCTGCCTTCAAATACTTTGTTGACTTTTTTGTTTACATGTCTCTCTACTAAGATAATATGTGTTGCAAGTTGGTTGTAACATGTTATCTTCTGTGCTGAACGCCAGGTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAGGTTTCTTCAATTTGAACTGTGTTTCATGTCTATATTTCAACACTGGAGTTTGCGTTTCAGTGGTAGCAATAATAATTTGGCATTCAGAGTGTCATACACAAGTTAGAAAAAGATCAAGCTTGACAAACTAATCAATCTGTATAATAGTGAAACTGGTTCTTATAATCAGTTAATACTATAGGTCTTGTATGCATTCCTTGCTCACCTCCTCTGAAAGATAATATCAGTTGCGTATGAGATTCTGCTGCAGTTTTGTGTTTAAAACTAAATACAGTTTTCAGTAGTTCCTTTATATGCAATGACTAATCATTTTCTGTTTCATGGGGTGATAATTTTATCAATGTGGTTCAGATCTTCCCATAAAGAAGTGGTATAGAACGTAAAAGAAATTGGTTCCCTACAAATGACTCCTAAACATCTAACACTAACATAAACCTCACGGGTGCACCAAAACTTTTCTAGAAATAAAAGGCATGCTCCGAATGCACAAAATTGTTTTCCACTCCTTCAAGGCTGTCTTGTATATTTCCCATAAGTACCCACATATTAGCCAAAGGAGCGGCATCCCATCCTCTGCATCTTCTTTTCCTTAGCTGGACAGAACAACCTTGAACTCTAGCTGCCATTGACCACTAATTATATACGAATTTACGACTTAAAAGTGTTCTTGAGAATCTTTAACTTGGGATGTATCTTTGGAACTTCAGTGAAGTGAAGTGCAGTTTAACCTGGTATCTTGGTACTTCTATAACTTAGGTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCGGTATGATATGCTATTAAGTATTACCCCCTCTGTTAGCATGTAGACATATATAAATTCTTCCCTATTTATGTCTGTCTACTGACCTGATTCAATTTAGGGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAGGTACCACTTATCCTAGCTGTTAATTTTATTCCTACCCTTGTCTAGTTTTACCAGTTAGGTTTAATGGGGTTGACAGTGCACATAAAGGATCACCAATTATCATCCTACTTTTGGATATTTACTGTTGAAAGAAAGATGCGGCGGATTGCTGTTACATTCTTCATTTATGGTTAATAATTTATAACTCATAATGAAGTCATTTCATGATTTGCTTACATTTCATGATTACAATGCGCTTTGGTTCTTTACAGAACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAGGTATCATTGTGATATCAGTATAATTAATTTGTTGCTATTTATTATTTTTAATATGATGACAATGATTGCAGTAGCCAAGTAATCATCAAAAACTGGCAGAAAGTACTCACTGATATACATGCATATATTTTTCTTTATCCCAGATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTG</genome_strand>
        <mrna_strand>AGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAG.........................................................................................CACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAG..............................................................................................................GTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCG.................................................................................................GGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAG...........................................................................................................................................................................................................................................................AACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAG...............................................................................................................................................ATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAAGCATTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366492" ref_strand="+" ref_description="SGN-E366492 [cLPT-13-K10]">
      <seq>aaagccctcagcacaattatccgatggattttcagagcaaaaaactcatcaacgaccccaatgatgttgtgacagagttcattgagggacttattgagaattatccagggttgcaatatctggatggtttcccagaggttaaggttgtcttgcgtgctgatgtttctggtgcaaaatatgacaaagttgccatcatatcacgtggtggaagtggccatgaacctgctcatgctggatttgttggagaagggatgctgactgcagctatctgtggggacgtttttgcctctccaaatgttgactcaattcttgcgggcatacgagctgtcacaggtcccatggggtgccttcttattgtcaagaactatactggtgatcgactgaattttggtttggctgctgaacaagcaaaatctgaaggttataaagtcgagatggtaattgtcggtgatgactgtgctttaccacctccaagaggcattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40475" stop="36510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40272" g_stop="40262" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40261" i_stop="40173" i_length="89">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40172" g_stop="40121" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="63" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40120" i_stop="38589" i_length="1532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38588" g_stop="38515" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="137" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38514" i_stop="38405" i_length="110">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38404" g_stop="38341" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="201" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38340" i_stop="37585" i_length="756">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37584" g_stop="37472" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="314" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37471" i_stop="37375" i_length="97">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37374" g_stop="37327" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="362" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37326" i_stop="37076" i_length="251">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="37075" g_stop="37004" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="434" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="37003" i_stop="36861" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="36860" g_stop="36810" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="485" r_length="51" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E366492" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40272" e_stop="40262"/>
          <exon e_start="40172" e_stop="40121"/>
          <exon e_start="38588" e_stop="38515"/>
          <exon e_start="38404" e_stop="38341"/>
          <exon e_start="37584" e_stop="37472"/>
          <exon e_start="37374" e_stop="37327"/>
          <exon e_start="37075" e_stop="37004"/>
          <exon e_start="36860" e_stop="36810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCCCTCAGGTTTTTCTTTCTTCTCAAAGAAGACACTTCACTTTTTTTTCTCTTTCTCTTTGAATTTTTTCTAATTTGTATCGCCTCTGTAAATGCAGCACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATGGTAACTGAAACCCCTAAAAATTGCTCTTATCGTTTTTACTTTGTTCTTCTTTCTCAATTGGATTGTTTATTGGATGTTGATGTGACAGATTGTTTATGTGCATTGCTTGTCATGTTCGTTGAATTGAAAGATGAGATTTTGTATAATTTGAGAAAGGGATTTTTTTAATCAATCGAGTTGTTTGAGTATATACGATCCTTTGTGGAAGTAGAAAAGAAAAAGAATTGACATTAGTGTTTTGTCTTGTTGGAAATGAAGGGAAGTCAAATATAGGAATAAAAAAGATTTAGTTTTAGGTATTAGGTAGAACTACTTATTTGCTATGCTTATCATACCAAACCTAAAGTAAGAGCATATGTGTAGAAAGGAGAAAAGTGTTTTGTTTTGATAACTGTGTTGTCCGGTTTCCGGTTTCCATTGTCTAGGACAACTTACCCTCAGTTAGACTAATTACACGGGGTACTAGCTAATGCGTAATAACACATATATCGATTAACTCTGTCCACCGCGGTATGGATAGAGGGGAAGAAATCGCCTAGTGCTTTTTGCCTAGGGATTTGAACATGAGAATTCATGCTTCTCAATTCACTTCGTCAACCACTAGGTCACATCTTTGGACGCGCCTTTTCGCTTCTAGAAATCTAGAACATTTATGGACCAATGTAAAAAAAAGAAATTCAACATTTTGACAGTAGCGAGGAGAAGGAAAGGAGTTGAAAGGGGCATGTATCCTTTTTTTTTTCTAAAGAAAGAGGGCTACTTCACGAGTCGCTTCTAATAATTGAAAAGGTTCACAACTAGTTCAGTCTATAGTGACAAAGGGAATGTTTCTGCCGGAGCCATGGAAAAAAGTATTCACTCCTGCTTACAGCACCTTCTTCACTCGTCTCGCTACTTCAGAACTGTTCAGCGGACACGTGGAGTCAAATGCAAACCATTTGTGGGAATTTGAGAACTTTCTCTTTTATCTCTTTCTCCTTGCTGGAAGGCTGTTTATGAGCGGAAGGGAAGTAGAGGTAGAGGGTCCGAAGGAGAGAGGAGATCTCTGCTATTATCGTTAATTAGGTGTGCCTCCAGATCCGAATGTATACCCTAGGCCAAGGGGTGCGATCACTTACAATGATCGGAGGCAGGTCAGGGGCTGGCGGATGCCCCCAGCTTCTTAAGTTTGGGAATTCCAAATGTTCTGGCACTTAATTTACATTAAAAAATGAATTAGTGTGGTAATGAAATGGGCCTGAATATGAAAGACTGGATGTATAAGGTTCACGTAGCTGATCAGAACTAATTTGGAATTGAGATCTAGTTGAATGACATCATATTCTGTTTCAATAGAAATGTATGTACATTAATATTTTCCTTATCAAAATTAATAAAAGAAATGTATGTACACTTTTGTGTGTCATATGTATGTGGCAGAATTAAATGTTATAGAGCTTTGTGAAGCTTATAATAGGTACTGTAGGTCTTATGTTATGTATGTAAATCCTAATAATTATCTGCTGTAGAGACTGAAGTGCAATGATTTGCAGATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAGGTGATCTGCCTTCAAATACTTTGTTGACTTTTTTGTTTACATGTCTCTCTACTAAGATAATATGTGTTGCAAGTTGGTTGTAACATGTTATCTTCTGTGCTGAACGCCAGGTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAGGTTTCTTCAATTTGAACTGTGTTTCATGTCTATATTTCAACACTGGAGTTTGCGTTTCAGTGGTAGCAATAATAATTTGGCATTCAGAGTGTCATACACAAGTTAGAAAAAGATCAAGCTTGACAAACTAATCAATCTGTATAATAGTGAAACTGGTTCTTATAATCAGTTAATACTATAGGTCTTGTATGCATTCCTTGCTCACCTCCTCTGAAAGATAATATCAGTTGCGTATGAGATTCTGCTGCAGTTTTGTGTTTAAAACTAAATACAGTTTTCAGTAGTTCCTTTATATGCAATGACTAATCATTTTCTGTTTCATGGGGTGATAATTTTATCAATGTGGTTCAGATCTTCCCATAAAGAAGTGGTATAGAACGTAAAAGAAATTGGTTCCCTACAAATGACTCCTAAACATCTAACACTAACATAAACCTCACGGGTGCACCAAAACTTTTCTAGAAATAAAAGGCATGCTCCGAATGCACAAAATTGTTTTCCACTCCTTCAAGGCTGTCTTGTATATTTCCCATAAGTACCCACATATTAGCCAAAGGAGCGGCATCCCATCCTCTGCATCTTCTTTTCCTTAGCTGGACAGAACAACCTTGAACTCTAGCTGCCATTGACCACTAATTATATACGAATTTACGACTTAAAAGTGTTCTTGAGAATCTTTAACTTGGGATGTATCTTTGGAACTTCAGTGAAGTGAAGTGCAGTTTAACCTGGTATCTTGGTACTTCTATAACTTAGGTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCGGTATGATATGCTATTAAGTATTACCCCCTCTGTTAGCATGTAGACATATATAAATTCTTCCCTATTTATGTCTGTCTACTGACCTGATTCAATTTAGGGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAGGTACCACTTATCCTAGCTGTTAATTTTATTCCTACCCTTGTCTAGTTTTACCAGTTAGGTTTAATGGGGTTGACAGTGCACATAAAGGATCACCAATTATCATCCTACTTTTGGATATTTACTGTTGAAAGAAAGATGCGGCGGATTGCTGTTACATTCTTCATTTATGGTTAATAATTTATAACTCATAATGAAGTCATTTCATGATTTGCTTACATTTCATGATTACAATGCGCTTTGGTTCTTTACAGAACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAGGTATCATTGTGATATCAGTATAATTAATTTGTTGCTATTTATTATTTTTAATATGATGACAATGATTGCAGTAGCCAAGTAATCATCAAAAACTGGCAGAAAGTACTCACTGATATACATGCATATATTTTTCTTTATCCCAGATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCT</genome_strand>
        <mrna_strand>AAAGCCCTCAG.........................................................................................CACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAATATCTGGATGGTTTCCCAGAG..............................................................................................................GTTAAGGTTGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAAGTGGCCATGAACCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGACTCAATTCTTGCG.................................................................................................GGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAG...........................................................................................................................................................................................................................................................AACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAG...............................................................................................................................................ATGGTAATTGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317027" ref_strand="+" ref_description="SGN-E317027 [cTOA-27-K9]">
      <seq>cattgaagtctactctccccacacctacaaagccctcagcacaattatccgatggattttcagagcaaaaaactcatcaacgaccccaatgatgttgtgacagagttcattgagggacttattgagaattatccagggttgcagtatctggatggtttcccagaggttaaggtcgtcttgcgtgctgatgtttctggtgcaaaatatgacaaagttgccatcatatcaggtggtggaaatggccatgagcctgctcatgctggatttgttggagaaaggatgctgactgcagctatctgtggggacgtttttgcctctccaaatgttgattcaattcttgcgggcatacgagctgtcacaagtcccatggggtgccttcttattgtcaagaactatactggtgatcgactgaattttggtttggctgctgaacaagcaaaatctgaaggttataaagaccagatggtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40599" stop="36702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40300" g_stop="40262" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40261" i_stop="40173" i_length="89">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40172" g_stop="40121" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="91" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40120" i_stop="38589" i_length="1532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38588" g_stop="38515" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="165" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38514" i_stop="38405" i_length="110">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38404" g_stop="38341" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="229" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38340" i_stop="37585" i_length="756">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37584" g_stop="37472" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="342" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37471" i_stop="37375" i_length="97">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37374" g_stop="37327" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="390" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37326" i_stop="37076" i_length="251">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="37075" g_stop="37004" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="462" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="37003" i_stop="36861" i_length="143">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="36860" g_stop="36854" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="469" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E317027" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40300" e_stop="40262"/>
          <exon e_start="40172" e_stop="40121"/>
          <exon e_start="38588" e_stop="38515"/>
          <exon e_start="38404" e_stop="38341"/>
          <exon e_start="37584" e_stop="37472"/>
          <exon e_start="37374" e_stop="37327"/>
          <exon e_start="37075" e_stop="37004"/>
          <exon e_start="36860" e_stop="36854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAGGTTTTTCTTTCTTCTCAAAGAAGACACTTCACTTTTTTTTCTCTTTCTCTTTGAATTTTTTCTAATTTGTATCGCCTCTGTAAATGCAGCACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATGGTAACTGAAACCCCTAAAAATTGCTCTTATCGTTTTTACTTTGTTCTTCTTTCTCAATTGGATTGTTTATTGGATGTTGATGTGACAGATTGTTTATGTGCATTGCTTGTCATGTTCGTTGAATTGAAAGATGAGATTTTGTATAATTTGAGAAAGGGATTTTTTTAATCAATCGAGTTGTTTGAGTATATACGATCCTTTGTGGAAGTAGAAAAGAAAAAGAATTGACATTAGTGTTTTGTCTTGTTGGAAATGAAGGGAAGTCAAATATAGGAATAAAAAAGATTTAGTTTTAGGTATTAGGTAGAACTACTTATTTGCTATGCTTATCATACCAAACCTAAAGTAAGAGCATATGTGTAGAAAGGAGAAAAGTGTTTTGTTTTGATAACTGTGTTGTCCGGTTTCCGGTTTCCATTGTCTAGGACAACTTACCCTCAGTTAGACTAATTACACGGGGTACTAGCTAATGCGTAATAACACATATATCGATTAACTCTGTCCACCGCGGTATGGATAGAGGGGAAGAAATCGCCTAGTGCTTTTTGCCTAGGGATTTGAACATGAGAATTCATGCTTCTCAATTCACTTCGTCAACCACTAGGTCACATCTTTGGACGCGCCTTTTCGCTTCTAGAAATCTAGAACATTTATGGACCAATGTAAAAAAAAGAAATTCAACATTTTGACAGTAGCGAGGAGAAGGAAAGGAGTTGAAAGGGGCATGTATCCTTTTTTTTTTCTAAAGAAAGAGGGCTACTTCACGAGTCGCTTCTAATAATTGAAAAGGTTCACAACTAGTTCAGTCTATAGTGACAAAGGGAATGTTTCTGCCGGAGCCATGGAAAAAAGTATTCACTCCTGCTTACAGCACCTTCTTCACTCGTCTCGCTACTTCAGAACTGTTCAGCGGACACGTGGAGTCAAATGCAAACCATTTGTGGGAATTTGAGAACTTTCTCTTTTATCTCTTTCTCCTTGCTGGAAGGCTGTTTATGAGCGGAAGGGAAGTAGAGGTAGAGGGTCCGAAGGAGAGAGGAGATCTCTGCTATTATCGTTAATTAGGTGTGCCTCCAGATCCGAATGTATACCCTAGGCCAAGGGGTGCGATCACTTACAATGATCGGAGGCAGGTCAGGGGCTGGCGGATGCCCCCAGCTTCTTAAGTTTGGGAATTCCAAATGTTCTGGCACTTAATTTACATTAAAAAATGAATTAGTGTGGTAATGAAATGGGCCTGAATATGAAAGACTGGATGTATAAGGTTCACGTAGCTGATCAGAACTAATTTGGAATTGAGATCTAGTTGAATGACATCATATTCTGTTTCAATAGAAATGTATGTACATTAATATTTTCCTTATCAAAATTAATAAAAGAAATGTATGTACACTTTTGTGTGTCATATGTATGTGGCAGAATTAAATGTTATAGAGCTTTGTGAAGCTTATAATAGGTACTGTAGGTCTTATGTTATGTATGTAAATCCTAATAATTATCTGCTGTAGAGACTGAAGTGCAATGATTTGCAGATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAGGTGATCTGCCTTCAAATACTTTGTTGACTTTTTTGTTTACATGTCTCTCTACTAAGATAATATGTGTTGCAAGTTGGTTGTAACATGTTATCTTCTGTGCTGAACGCCAGGTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAGGTTTCTTCAATTTGAACTGTGTTTCATGTCTATATTTCAACACTGGAGTTTGCGTTTCAGTGGTAGCAATAATAATTTGGCATTCAGAGTGTCATACACAAGTTAGAAAAAGATCAAGCTTGACAAACTAATCAATCTGTATAATAGTGAAACTGGTTCTTATAATCAGTTAATACTATAGGTCTTGTATGCATTCCTTGCTCACCTCCTCTGAAAGATAATATCAGTTGCGTATGAGATTCTGCTGCAGTTTTGTGTTTAAAACTAAATACAGTTTTCAGTAGTTCCTTTATATGCAATGACTAATCATTTTCTGTTTCATGGGGTGATAATTTTATCAATGTGGTTCAGATCTTCCCATAAAGAAGTGGTATAGAACGTAAAAGAAATTGGTTCCCTACAAATGACTCCTAAACATCTAACACTAACATAAACCTCACGGGTGCACCAAAACTTTTCTAGAAATAAAAGGCATGCTCCGAATGCACAAAATTGTTTTCCACTCCTTCAAGGCTGTCTTGTATATTTCCCATAAGTACCCACATATTAGCCAAAGGAGCGGCATCCCATCCTCTGCATCTTCTTTTCCTTAGCTGGACAGAACAACCTTGAACTCTAGCTGCCATTGACCACTAATTATATACGAATTTACGACTTAAAAGTGTTCTTGAGAATCTTTAACTTGGGATGTATCTTTGGAACTTCAGTGAAGTGAAGTGCAGTTTAACCTGGTATCTTGGTACTTCTATAACTTAGGTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCGGTATGATATGCTATTAAGTATTACCCCCTCTGTTAGCATGTAGACATATATAAATTCTTCCCTATTTATGTCTGTCTACTGACCTGATTCAATTTAGGGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAGGTACCACTTATCCTAGCTGTTAATTTTATTCCTACCCTTGTCTAGTTTTACCAGTTAGGTTTAATGGGGTTGACAGTGCACATAAAGGATCACCAATTATCATCCTACTTTTGGATATTTACTGTTGAAAGAAAGATGCGGCGGATTGCTGTTACATTCTTCATTTATGGTTAATAATTTATAACTCATAATGAAGTCATTTCATGATTTGCTTACATTTCATGATTACAATGCGCTTTGGTTCTTTACAGAACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAGGTATCATTGTGATATCAGTATAATTAATTTGTTGCTATTTATTATTTTTAATATGATGACAATGATTGCAGTAGCCAAGTAATCATCAAAAACTGGCAGAAAGTACTCACTGATATACATGCATATATTTTTCTTTATCCCAGATGGTAA</genome_strand>
        <mrna_strand>CATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAG.........................................................................................CACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAG..............................................................................................................GTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAAATGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAAGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCG.................................................................................................GGCATACGAGCTGTCACAAGTCCCATGGGGTGCCTTCTTATTGTCAAG...........................................................................................................................................................................................................................................................AACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGACCAG...............................................................................................................................................ATGGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314130" ref_strand="+" ref_description="SGN-E314130 [cTOA-21-G11]">
      <seq>agcattcaacaattgaagtctactctccccacacctacaaagccctcagcacaattatccgatggattttcagagcaaaaaactcatcaacgaccccaatgatgttgtgacagagttcattgagggacttattgagaattatccagggttgcagtatctggatggtttcccagaggttaaggtcgtcttgcgtgctgatgtttctggtgcaaaatatgacaaagttgccatcatatcaggtggtggaagtggccatgagcctgctcatgctggatttgttggagaagggatgctgactgcagctatctgtggggacgtttttgcctctccaaatgttgattcaattcttgcgggcatacgagctgtcacaggtcccatggggtgccttcttattgtcaagaactatactggtgatcgactgaattttgggttggctgctgaacaagcaaaatctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40610" stop="36720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40310" g_stop="40262" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40261" i_stop="40173" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40172" g_stop="40121" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="101" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40120" i_stop="38589" i_length="1532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38588" g_stop="38515" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="175" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38514" i_stop="38405" i_length="110">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38404" g_stop="38341" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="239" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38340" i_stop="37585" i_length="756">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37584" g_stop="37472" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="352" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37471" i_stop="37375" i_length="97">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37374" g_stop="37327" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="400" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37326" i_stop="37076" i_length="251">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="37075" g_stop="37020" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="456" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E314130" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40310" e_stop="40262"/>
          <exon e_start="40172" e_stop="40121"/>
          <exon e_start="38588" e_stop="38515"/>
          <exon e_start="38404" e_stop="38341"/>
          <exon e_start="37584" e_stop="37472"/>
          <exon e_start="37374" e_stop="37327"/>
          <exon e_start="37075" e_stop="37020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAGGTTTTTCTTTCTTCTCAAAGAAGACACTTCACTTTTTTTTCTCTTTCTCTTTGAATTTTTTCTAATTTGTATCGCCTCTGTAAATGCAGCACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATGGTAACTGAAACCCCTAAAAATTGCTCTTATCGTTTTTACTTTGTTCTTCTTTCTCAATTGGATTGTTTATTGGATGTTGATGTGACAGATTGTTTATGTGCATTGCTTGTCATGTTCGTTGAATTGAAAGATGAGATTTTGTATAATTTGAGAAAGGGATTTTTTTAATCAATCGAGTTGTTTGAGTATATACGATCCTTTGTGGAAGTAGAAAAGAAAAAGAATTGACATTAGTGTTTTGTCTTGTTGGAAATGAAGGGAAGTCAAATATAGGAATAAAAAAGATTTAGTTTTAGGTATTAGGTAGAACTACTTATTTGCTATGCTTATCATACCAAACCTAAAGTAAGAGCATATGTGTAGAAAGGAGAAAAGTGTTTTGTTTTGATAACTGTGTTGTCCGGTTTCCGGTTTCCATTGTCTAGGACAACTTACCCTCAGTTAGACTAATTACACGGGGTACTAGCTAATGCGTAATAACACATATATCGATTAACTCTGTCCACCGCGGTATGGATAGAGGGGAAGAAATCGCCTAGTGCTTTTTGCCTAGGGATTTGAACATGAGAATTCATGCTTCTCAATTCACTTCGTCAACCACTAGGTCACATCTTTGGACGCGCCTTTTCGCTTCTAGAAATCTAGAACATTTATGGACCAATGTAAAAAAAAGAAATTCAACATTTTGACAGTAGCGAGGAGAAGGAAAGGAGTTGAAAGGGGCATGTATCCTTTTTTTTTTCTAAAGAAAGAGGGCTACTTCACGAGTCGCTTCTAATAATTGAAAAGGTTCACAACTAGTTCAGTCTATAGTGACAAAGGGAATGTTTCTGCCGGAGCCATGGAAAAAAGTATTCACTCCTGCTTACAGCACCTTCTTCACTCGTCTCGCTACTTCAGAACTGTTCAGCGGACACGTGGAGTCAAATGCAAACCATTTGTGGGAATTTGAGAACTTTCTCTTTTATCTCTTTCTCCTTGCTGGAAGGCTGTTTATGAGCGGAAGGGAAGTAGAGGTAGAGGGTCCGAAGGAGAGAGGAGATCTCTGCTATTATCGTTAATTAGGTGTGCCTCCAGATCCGAATGTATACCCTAGGCCAAGGGGTGCGATCACTTACAATGATCGGAGGCAGGTCAGGGGCTGGCGGATGCCCCCAGCTTCTTAAGTTTGGGAATTCCAAATGTTCTGGCACTTAATTTACATTAAAAAATGAATTAGTGTGGTAATGAAATGGGCCTGAATATGAAAGACTGGATGTATAAGGTTCACGTAGCTGATCAGAACTAATTTGGAATTGAGATCTAGTTGAATGACATCATATTCTGTTTCAATAGAAATGTATGTACATTAATATTTTCCTTATCAAAATTAATAAAAGAAATGTATGTACACTTTTGTGTGTCATATGTATGTGGCAGAATTAAATGTTATAGAGCTTTGTGAAGCTTATAATAGGTACTGTAGGTCTTATGTTATGTATGTAAATCCTAATAATTATCTGCTGTAGAGACTGAAGTGCAATGATTTGCAGATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAGGTGATCTGCCTTCAAATACTTTGTTGACTTTTTTGTTTACATGTCTCTCTACTAAGATAATATGTGTTGCAAGTTGGTTGTAACATGTTATCTTCTGTGCTGAACGCCAGGTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAGGTTTCTTCAATTTGAACTGTGTTTCATGTCTATATTTCAACACTGGAGTTTGCGTTTCAGTGGTAGCAATAATAATTTGGCATTCAGAGTGTCATACACAAGTTAGAAAAAGATCAAGCTTGACAAACTAATCAATCTGTATAATAGTGAAACTGGTTCTTATAATCAGTTAATACTATAGGTCTTGTATGCATTCCTTGCTCACCTCCTCTGAAAGATAATATCAGTTGCGTATGAGATTCTGCTGCAGTTTTGTGTTTAAAACTAAATACAGTTTTCAGTAGTTCCTTTATATGCAATGACTAATCATTTTCTGTTTCATGGGGTGATAATTTTATCAATGTGGTTCAGATCTTCCCATAAAGAAGTGGTATAGAACGTAAAAGAAATTGGTTCCCTACAAATGACTCCTAAACATCTAACACTAACATAAACCTCACGGGTGCACCAAAACTTTTCTAGAAATAAAAGGCATGCTCCGAATGCACAAAATTGTTTTCCACTCCTTCAAGGCTGTCTTGTATATTTCCCATAAGTACCCACATATTAGCCAAAGGAGCGGCATCCCATCCTCTGCATCTTCTTTTCCTTAGCTGGACAGAACAACCTTGAACTCTAGCTGCCATTGACCACTAATTATATACGAATTTACGACTTAAAAGTGTTCTTGAGAATCTTTAACTTGGGATGTATCTTTGGAACTTCAGTGAAGTGAAGTGCAGTTTAACCTGGTATCTTGGTACTTCTATAACTTAGGTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCGGTATGATATGCTATTAAGTATTACCCCCTCTGTTAGCATGTAGACATATATAAATTCTTCCCTATTTATGTCTGTCTACTGACCTGATTCAATTTAGGGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAGGTACCACTTATCCTAGCTGTTAATTTTATTCCTACCCTTGTCTAGTTTTACCAGTTAGGTTTAATGGGGTTGACAGTGCACATAAAGGATCACCAATTATCATCCTACTTTTGGATATTTACTGTTGAAAGAAAGATGCGGCGGATTGCTGTTACATTCTTCATTTATGGTTAATAATTTATAACTCATAATGAAGTCATTTCATGATTTGCTTACATTTCATGATTACAATGCGCTTTGGTTCTTTACAGAACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGA</genome_strand>
        <mrna_strand>AGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAG.........................................................................................CACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAG..............................................................................................................GTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCG.................................................................................................GGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAG...........................................................................................................................................................................................................................................................AACTATACTGGTGATCGACTGAATTTTGGGTTGGCTGCTGAACAAGCAAAATCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281372" ref_strand="-" ref_description="SGN-E281372 [cLEL-1-N4](-)">
      <seq>gcacgagaagcattcaacaattgaagtctactctccccacacctacaaagccctcagcacaattatccgatggattttcagagcaaaaaactcatcaacgaccccaatgatgttgtgacagagttcattgagggacttattgagaattatccagggttgcagtatctggatggtttcccagaggttaaggtcgtcttgcgtgctgatgtttctggtgcaaaatatgacaaagttgccatcatatcaggtggtggaagtggccatgagcctgctcatgctggatttgttggagaagggatgctgactgcagctatctgtggggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40616" stop="37208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40318" g_stop="40262" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40261" i_stop="40173" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40172" g_stop="40121" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="109" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40120" i_stop="38589" i_length="1532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38588" g_stop="38515" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="183" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38514" i_stop="38405" i_length="110">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38404" g_stop="38341" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="247" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38340" i_stop="37585" i_length="756">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37584" g_stop="37508" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="324" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E281372" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281372" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="40318" e_stop="40262"/>
          <exon e_start="40172" e_stop="40121"/>
          <exon e_start="38588" e_stop="38515"/>
          <exon e_start="38404" e_stop="38341"/>
          <exon e_start="37584" e_stop="37508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGACAAAGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAGGTTTTTCTTTCTTCTCAAAGAAGACACTTCACTTTTTTTTCTCTTTCTCTTTGAATTTTTTCTAATTTGTATCGCCTCTGTAAATGCAGCACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATGGTAACTGAAACCCCTAAAAATTGCTCTTATCGTTTTTACTTTGTTCTTCTTTCTCAATTGGATTGTTTATTGGATGTTGATGTGACAGATTGTTTATGTGCATTGCTTGTCATGTTCGTTGAATTGAAAGATGAGATTTTGTATAATTTGAGAAAGGGATTTTTTTAATCAATCGAGTTGTTTGAGTATATACGATCCTTTGTGGAAGTAGAAAAGAAAAAGAATTGACATTAGTGTTTTGTCTTGTTGGAAATGAAGGGAAGTCAAATATAGGAATAAAAAAGATTTAGTTTTAGGTATTAGGTAGAACTACTTATTTGCTATGCTTATCATACCAAACCTAAAGTAAGAGCATATGTGTAGAAAGGAGAAAAGTGTTTTGTTTTGATAACTGTGTTGTCCGGTTTCCGGTTTCCATTGTCTAGGACAACTTACCCTCAGTTAGACTAATTACACGGGGTACTAGCTAATGCGTAATAACACATATATCGATTAACTCTGTCCACCGCGGTATGGATAGAGGGGAAGAAATCGCCTAGTGCTTTTTGCCTAGGGATTTGAACATGAGAATTCATGCTTCTCAATTCACTTCGTCAACCACTAGGTCACATCTTTGGACGCGCCTTTTCGCTTCTAGAAATCTAGAACATTTATGGACCAATGTAAAAAAAAGAAATTCAACATTTTGACAGTAGCGAGGAGAAGGAAAGGAGTTGAAAGGGGCATGTATCCTTTTTTTTTTCTAAAGAAAGAGGGCTACTTCACGAGTCGCTTCTAATAATTGAAAAGGTTCACAACTAGTTCAGTCTATAGTGACAAAGGGAATGTTTCTGCCGGAGCCATGGAAAAAAGTATTCACTCCTGCTTACAGCACCTTCTTCACTCGTCTCGCTACTTCAGAACTGTTCAGCGGACACGTGGAGTCAAATGCAAACCATTTGTGGGAATTTGAGAACTTTCTCTTTTATCTCTTTCTCCTTGCTGGAAGGCTGTTTATGAGCGGAAGGGAAGTAGAGGTAGAGGGTCCGAAGGAGAGAGGAGATCTCTGCTATTATCGTTAATTAGGTGTGCCTCCAGATCCGAATGTATACCCTAGGCCAAGGGGTGCGATCACTTACAATGATCGGAGGCAGGTCAGGGGCTGGCGGATGCCCCCAGCTTCTTAAGTTTGGGAATTCCAAATGTTCTGGCACTTAATTTACATTAAAAAATGAATTAGTGTGGTAATGAAATGGGCCTGAATATGAAAGACTGGATGTATAAGGTTCACGTAGCTGATCAGAACTAATTTGGAATTGAGATCTAGTTGAATGACATCATATTCTGTTTCAATAGAAATGTATGTACATTAATATTTTCCTTATCAAAATTAATAAAAGAAATGTATGTACACTTTTGTGTGTCATATGTATGTGGCAGAATTAAATGTTATAGAGCTTTGTGAAGCTTATAATAGGTACTGTAGGTCTTATGTTATGTATGTAAATCCTAATAATTATCTGCTGTAGAGACTGAAGTGCAATGATTTGCAGATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAGGTGATCTGCCTTCAAATACTTTGTTGACTTTTTTGTTTACATGTCTCTCTACTAAGATAATATGTGTTGCAAGTTGGTTGTAACATGTTATCTTCTGTGCTGAACGCCAGGTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAGGTTTCTTCAATTTGAACTGTGTTTCATGTCTATATTTCAACACTGGAGTTTGCGTTTCAGTGGTAGCAATAATAATTTGGCATTCAGAGTGTCATACACAAGTTAGAAAAAGATCAAGCTTGACAAACTAATCAATCTGTATAATAGTGAAACTGGTTCTTATAATCAGTTAATACTATAGGTCTTGTATGCATTCCTTGCTCACCTCCTCTGAAAGATAATATCAGTTGCGTATGAGATTCTGCTGCAGTTTTGTGTTTAAAACTAAATACAGTTTTCAGTAGTTCCTTTATATGCAATGACTAATCATTTTCTGTTTCATGGGGTGATAATTTTATCAATGTGGTTCAGATCTTCCCATAAAGAAGTGGTATAGAACGTAAAAGAAATTGGTTCCCTACAAATGACTCCTAAACATCTAACACTAACATAAACCTCACGGGTGCACCAAAACTTTTCTAGAAATAAAAGGCATGCTCCGAATGCACAAAATTGTTTTCCACTCCTTCAAGGCTGTCTTGTATATTTCCCATAAGTACCCACATATTAGCCAAAGGAGCGGCATCCCATCCTCTGCATCTTCTTTTCCTTAGCTGGACAGAACAACCTTGAACTCTAGCTGCCATTGACCACTAATTATATACGAATTTACGACTTAAAAGTGTTCTTGAGAATCTTTAACTTGGGATGTATCTTTGGAACTTCAGTGAAGTGAAGTGCAGTTTAACCTGGTATCTTGGTACTTCTATAACTTAGGTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGAC</genome_strand>
        <mrna_strand>GCACGAGAAGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAG.........................................................................................CACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAG..............................................................................................................GTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689309" ref_strand="+" ref_description="SGN-E689309 [t3_tus_84_A17]">
      <seq>ggctgttacaccccttgatcttgtcaagtgtaacatgcagatcgatcctgcaaaatacaagagcatttcctctggttttggtgttctgcttaaggagcagggtgctagaggcttcttcaggggatgggtgcctacgttgctcggttacagcgcccagggagcttgcaaatatggattctatgaatatttcaagaagtattacacagaccttgctgggcctgagaatgctgccaagtacaaaactttgattttccttgctggttctgcttctgctgaagttattgctgatgttgctctctgcccatttgaggctgtcaaagttcgcgttcagactcagcctggttttgccagaggcttgtctgacggacttcccaaatttgttagggctgagggagcctctgggctgtataaggggcttgttcctctctggggacgacagattccgtacaccatgatgaagtttgcatcatttgaaacaattgtggaacaactctacaaaaatgtcatcccaacaccaaaagaccaatgcagtaaatcaacgcagctcggtgtgagctttgctggtggatatttagctggtattctttgtgctattgtgtcacaccctgctgataacctggtttctttcctaaacaacgcaaagggtgcaactgttggcgatgctgtgaacaagctaggtgtgatgggtctttgtactcgcggtcttcctattcgtatagtcatgattggtacactcactggagcacaatggggtatctatgactctntcaaagttttcgttggactgccaacgactggtggtgcagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47858" stop="45555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47558" g_stop="47519" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47518" i_stop="47013" i_length="506">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47012" g_stop="46651" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="402" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46650" i_stop="46551" i_length="100">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46550" g_stop="46507" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="446" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46506" i_stop="46418" i_length="89">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46417" g_stop="46203" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="661" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46202" i_stop="46118" i_length="85">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46117" g_stop="45993" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="786" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45992" i_stop="45878" i_length="115">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45877" g_stop="45855" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="787" r_stop="809" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E689309" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47558" e_stop="47519"/>
          <exon e_start="47012" e_stop="46651"/>
          <exon e_start="46550" e_stop="46507"/>
          <exon e_start="46417" e_stop="46203"/>
          <exon e_start="46117" e_stop="45993"/>
          <exon e_start="45877" e_stop="45855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGTTACACCCCTTGATCTTGTCAAGTGTAACATGCAGGTACCTTTAATCTACGCGCGATCTTATTATATGTATACATTTTGTGTAGAATTGTCTAGCAATGCGAAGAAAAAATTTGCCTATTCTGTTTAACAAGTTAATAAGTAGAACAAGAGAATTAAATTACCAAATTAGGATTGAATTGTTGTTTGTTTGTTTAATTATTTGGATCATTAAGGTTACTTGACAAAGCTGGTAAGTTGACAGTGTTAAATATATCTACACAATCGCAAAACTTGTAAGAGATATTGAATTGTATCCTGTAAGTATGAAAAGTATCTTTACACGGTCAGTGTATATCCTTCTTTAAGGTTCTCAGATGTTAAGATGTCGTACATTGATATAGAGAGATGGAAATTTGGTCTCGTTATGTGGACTTGGACAAACCTCCCCTCATTGAGCTTGCTTTTGGGGTTGAGTTAGGCCCAGGTGTTATATCTTTTAACATCAGATCCAGTCAGTCAGTTTGTTACTAATGTGATGAATGATGTGGTTCGAATTGTTAGATCGATCCTGCAAAATACAAGAGCATTTCCTCTGGTTTTGGTGTTCTGCTTAAGGAGCAGGGTGCTAGAGGCTTCTTCAGGGGATGGGTGCCTACGTTGCTCGGTTACAGCGCCCAGGGAGCTTGCAAATATGGATTCTATGAATATTTCAAGAAGTATTACACAGACCTTGCTGGGCCTGAGAATGCTGCCAAGTACAAAACTTTGATTTTCCTTGCTGGTTCTGCTTCTGCTGAAGTTATTGCTGATGTTGCTCTCTGCCCATTTGAGGCTGTCAAAGTTCGCGTTCAGACTCAGCCTGGTTTTGCCAGAGGCTTGTCTGACGGACTTCCCAAATTTGTTAGGGCTGAGGGAGCCTCTGGGTAATACCTTGTTATGTTGATAAATTCATCGCGAATTATTATTATTACATAGTTTGTTAATGTAAGATTCACTGTTTGATTTATTTTTTTATGTATACAGGCTGTATAAGGGGCTTGTTCCTCTCTGGGGACGACAGATTCCGTGTAAGTTTACATTCCATGAAATGCGCTAGTTTTGGCTCTATGTAGTACTTATAATCAGCCTATTATTGTATATTGGGTTATTTATACAGACACCATGATGAAGTTTGCATCATTTGAAACAATTGTGGAACAACTCTACAAAAATGTCATCCCAACACCAAAAGACCAATGCAGTAAATCAACGCAGCTCGGTGTGAGCTTTGCTGGTGGATATTTAGCTGGTATTCTTTGTGCTATTGTGTCACACCCTGCTGATAACCTGGTTTCTTTCCTAAACAACGCAAAGGGTGCAACTGTTGGCGATGTGAGTTAACAAAATTCTGTTCCATGATATACTAATTTGGCTGTACCTTTGAGAATCGTTTTTAACGCAATTGTGTCTATTACAGGCTGTGAACAAGCTAGGTGTGATGGGTCTTTGTACTCGCGGTCTTCCTATTCGTATAGTCATGATTGGTACACTCACTGGAGCACAATGGGGTATCTATGACTCTTTCAAAGTTTTCGTTGGACTGTGAGTTTCTCCTCCCTTTCTTTCTCTCACAATTGTCTAATTTCAACGTGTGTTTGATATGACGAATGTTAAAAAAAAAATATTACATGATGTTTACATCCGTTGCTTCTCGCAGGCCAACGACTGGTGGTGCAGCTC</genome_strand>
        <mrna_strand>GGCTGTTACACCCCTTGATCTTGTCAAGTGTAACATGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGATCCTGCAAAATACAAGAGCATTTCCTCTGGTTTTGGTGTTCTGCTTAAGGAGCAGGGTGCTAGAGGCTTCTTCAGGGGATGGGTGCCTACGTTGCTCGGTTACAGCGCCCAGGGAGCTTGCAAATATGGATTCTATGAATATTTCAAGAAGTATTACACAGACCTTGCTGGGCCTGAGAATGCTGCCAAGTACAAAACTTTGATTTTCCTTGCTGGTTCTGCTTCTGCTGAAGTTATTGCTGATGTTGCTCTCTGCCCATTTGAGGCTGTCAAAGTTCGCGTTCAGACTCAGCCTGGTTTTGCCAGAGGCTTGTCTGACGGACTTCCCAAATTTGTTAGGGCTGAGGGAGCCTCTGG....................................................................................................GCTGTATAAGGGGCTTGTTCCTCTCTGGGGACGACAGATTCCGT.........................................................................................ACACCATGATGAAGTTTGCATCATTTGAAACAATTGTGGAACAACTCTACAAAAATGTCATCCCAACACCAAAAGACCAATGCAGTAAATCAACGCAGCTCGGTGTGAGCTTTGCTGGTGGATATTTAGCTGGTATTCTTTGTGCTATTGTGTCACACCCTGCTGATAACCTGGTTTCTTTCCTAAACAACGCAAAGGGTGCAACTGTTGGCGAT.....................................................................................GCTGTGAACAAGCTAGGTGTGATGGGTCTTTGTACTCGCGGTCTTCCTATTCGTATAGTCATGATTGGTACACTCACTGGAGCACAATGGGGTATCTATGACTCTNTCAAAGTTTTCGTTGGACT...................................................................................................................GCCAACGACTGGTGGTGCAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332428" ref_strand="+" ref_description="SGN-E332428 [cTOD-17-M18]">
      <seq>gctgttacaccccttgatcttgtcaagtgtaacatgcagatcgatcctgcaaaatacaagagcatttcctctggttttggtgttctgcttaaggagcagggtgctagaggcttcttcaggggatgggtgcctacgttgctcggttacagcgcccagggagcttgcaaatatggattctatgaatatttcaagaagtattacacagaccttgctgggcctgagaatgctgccaagtacaaaactttgattttccttgctggttctgcttctgctgaagttattgctgatgttgctctctgcccatttgaggctgtcaaagttcgcgttcagactcagcctggttttgccagaggcttgtctgacggacttcccaaatttgttagggctgagggagcctctgggctgtataaggggcttgttcctctctggggacgacagattccgtacaccatgatgaagtttgcatcatttgaaacaattgtggaacaactctacaaaaatgtcatcccaacaccaaaagaccaatgcagtaaatcaacgcagctcggtgtgagctttgctggtggatatttagctggtattctttgtgctattgtgtcacaccctgctgataacctggtttctttcctaaacaacgcaaagggtgcaacttgttggcgatgctgtgaacnagctangtgtgatgggtctttgtactcgcggtcttcctattcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47857" stop="45764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47557" g_stop="47519" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47518" i_stop="47013" i_length="506">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47012" g_stop="46651" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="401" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46650" i_stop="46551" i_length="100">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46550" g_stop="46507" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="445" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46506" i_stop="46418" i_length="89">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46417" g_stop="46203" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="661" r_length="216" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46202" i_stop="46118" i_length="85">
            <donor d_prob="0.960" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46117" g_stop="46064" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="715" r_length="54" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E332428" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47557" e_stop="47519"/>
          <exon e_start="47012" e_stop="46651"/>
          <exon e_start="46550" e_stop="46507"/>
          <exon e_start="46417" e_stop="46203"/>
          <exon e_start="46117" e_stop="46064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTACACCCCTTGATCTTGTCAAGTGTAACATGCAGGTACCTTTAATCTACGCGCGATCTTATTATATGTATACATTTTGTGTAGAATTGTCTAGCAATGCGAAGAAAAAATTTGCCTATTCTGTTTAACAAGTTAATAAGTAGAACAAGAGAATTAAATTACCAAATTAGGATTGAATTGTTGTTTGTTTGTTTAATTATTTGGATCATTAAGGTTACTTGACAAAGCTGGTAAGTTGACAGTGTTAAATATATCTACACAATCGCAAAACTTGTAAGAGATATTGAATTGTATCCTGTAAGTATGAAAAGTATCTTTACACGGTCAGTGTATATCCTTCTTTAAGGTTCTCAGATGTTAAGATGTCGTACATTGATATAGAGAGATGGAAATTTGGTCTCGTTATGTGGACTTGGACAAACCTCCCCTCATTGAGCTTGCTTTTGGGGTTGAGTTAGGCCCAGGTGTTATATCTTTTAACATCAGATCCAGTCAGTCAGTTTGTTACTAATGTGATGAATGATGTGGTTCGAATTGTTAGATCGATCCTGCAAAATACAAGAGCATTTCCTCTGGTTTTGGTGTTCTGCTTAAGGAGCAGGGTGCTAGAGGCTTCTTCAGGGGATGGGTGCCTACGTTGCTCGGTTACAGCGCCCAGGGAGCTTGCAAATATGGATTCTATGAATATTTCAAGAAGTATTACACAGACCTTGCTGGGCCTGAGAATGCTGCCAAGTACAAAACTTTGATTTTCCTTGCTGGTTCTGCTTCTGCTGAAGTTATTGCTGATGTTGCTCTCTGCCCATTTGAGGCTGTCAAAGTTCGCGTTCAGACTCAGCCTGGTTTTGCCAGAGGCTTGTCTGACGGACTTCCCAAATTTGTTAGGGCTGAGGGAGCCTCTGGGTAATACCTTGTTATGTTGATAAATTCATCGCGAATTATTATTATTACATAGTTTGTTAATGTAAGATTCACTGTTTGATTTATTTTTTTATGTATACAGGCTGTATAAGGGGCTTGTTCCTCTCTGGGGACGACAGATTCCGTGTAAGTTTACATTCCATGAAATGCGCTAGTTTTGGCTCTATGTAGTACTTATAATCAGCCTATTATTGTATATTGGGTTATTTATACAGACACCATGATGAAGTTTGCATCATTTGAAACAATTGTGGAACAACTCTACAAAAATGTCATCCCAACACCAAAAGACCAATGCAGTAAATCAACGCAGCTCGGTGTGAGCTTTGCTGGTGGATATTTAGCTGGTATTCTTTGTGCTATTGTGTCACACCCTGCTGATAACCTGGTTTCTTTCCTAAACAACGCAAAGGGTGCAAC-TGTTGGCGATGTGAGTTAACAAAATTCTGTTCCATGATATACTAATTTGGCTGTACCTTTGAGAATCGTTTTTAACGCAATTGTGTCTATTACAGGCTGTGAACAAGCTAGGTGTGATGGGTCTTTGTACTCGCGGTCTTCCTATTCGT</genome_strand>
        <mrna_strand>GCTGTTACACCCCTTGATCTTGTCAAGTGTAACATGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGATCCTGCAAAATACAAGAGCATTTCCTCTGGTTTTGGTGTTCTGCTTAAGGAGCAGGGTGCTAGAGGCTTCTTCAGGGGATGGGTGCCTACGTTGCTCGGTTACAGCGCCCAGGGAGCTTGCAAATATGGATTCTATGAATATTTCAAGAAGTATTACACAGACCTTGCTGGGCCTGAGAATGCTGCCAAGTACAAAACTTTGATTTTCCTTGCTGGTTCTGCTTCTGCTGAAGTTATTGCTGATGTTGCTCTCTGCCCATTTGAGGCTGTCAAAGTTCGCGTTCAGACTCAGCCTGGTTTTGCCAGAGGCTTGTCTGACGGACTTCCCAAATTTGTTAGGGCTGAGGGAGCCTCTGG....................................................................................................GCTGTATAAGGGGCTTGTTCCTCTCTGGGGACGACAGATTCCGT.........................................................................................ACACCATGATGAAGTTTGCATCATTTGAAACAATTGTGGAACAACTCTACAAAAATGTCATCCCAACACCAAAAGACCAATGCAGTAAATCAACGCAGCTCGGTGTGAGCTTTGCTGGTGGATATTTAGCTGGTATTCTTTGTGCTATTGTGTCACACCCTGCTGATAACCTGGTTTCTTTCCTAAACAACGCAAAGGGTGCAACTTGTTGGCGAT.....................................................................................GCTGTGAACNAGCTANGTGTGATGGGTCTTTGTACTCGCGGTCTTCCTATTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319491" ref_strand="+" ref_description="SGN-E319491 [cTOB-15-I3]">
      <seq>tgacaaggaaagagatattagaaaagaagaagaaggtgcaagagataatcaaagctgctgtttctcagaaagacctttttttcttccttcccaacttttcgccattacaagaaaaaggatttgtctgtgtacttggactcgggatgcggagatagcctttcttctccagtaaagcagtatattcagaatctcctcaaggtataggccttttacaggtgaatatggaggcatcctatggaacagagtggcctgtagaagagaaggtgaagcgcagggagatggtttcttctgaagctcgttatatatttgtgtatgagatatcaaatgtggatgacatgctcaaattatcaaagaaagaaaggtgtaatgcagacggtatggatgataaaggtcatcttgtggcttttgtacattaccgcttcaccatcgaggaagaaattcctgttctttatgtgtatgaattacagcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52192" stop="50555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52007" g_stop="51994" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51993" i_stop="51883" i_length="111">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51882" g_stop="51780" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="118" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51779" i_stop="51294" i_length="486">
            <donor d_prob="0.941" d_score="0.96"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51293" g_stop="51214" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="198" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51213" i_stop="51128" i_length="86">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51127" g_stop="50855" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="471" r_length="273" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E319491" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52007" e_stop="51994"/>
          <exon e_start="51882" e_stop="51780"/>
          <exon e_start="51293" e_stop="51214"/>
          <exon e_start="51127" e_stop="50855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAAGGAAAGAGGTAACATAAACTAACGTTTGCCCATTTCCCCAAAATCATCAATTTGTTTGTTAAAATTTAGTAAAACAAAGCAATAATGAACAGTTAAATCTACTTTGTTTATGAAGGCAGATATTAGAAAAGAAGAAGAAGGTGCAAGAGATAATCAAAGCTGCTGTTTCTCAGAAAGACCTTT-TTTCTTCCTTCCCAACTTTTCGCCATTACAAGAAAAAGGGTTCGGTTTTTTTATTTATTTTGTATCCATAAATTTATTATTTTGGTGAATCCATAATCTGTTAAATCCTTCATATTCTGTCTTACCTTTGTATTAGTGCAAAAAAAACAAGGCCCTTTTACCCTTTTTACACATATTCACTCATCTTCTTTCATAAAGGGAAGAACTTTAGTCAATAGGGTTGTCTTCAGTATCAAGGAAAATGTTTTCTACGAAAATATGTATTTTCTTATGTTCGGTGGTCAAGAAAAAAATATTATTATTAAAGCATTTTTTATATGATCTACCCGAGTACACTATTGGAGGTGACATAGGAGAGGGGACTTTTGCATACTTCCTTGGGGTTAGAACTTGAGACCTCCGGTTAAGGGTAGAGGAATCCTATCTATCCTACACTACAACCTTTATTGGTTATGTATAATGTTGTTTGCTGTTATACGTTATTCAATTTTTGTATGTGTAATGTATAGTTGATTTGATCATTAGATTTGTCTGTGTACTTGGACTCGGGATGCGGAGATAGCCTTTCTTCTCCAGTAAAGCAGTATATTCAGAATCTCCTCAAGGTAGCAAAATGGCTAACTTATTGTGATTCGAGTTTTAGCTACAACTTCAAATCAATGATCGTAGGGATATTTCCTCTTTTCTGAAGGTATAGGCCTTTTACAGGTGAATATGGAGGCATCCTATGGAACAGAGTGGCCTGTAGAAGAGAAGGTGAAGCGCAGGGAGATGGTTTCTTCTGAAGCTCGTTATATATTTGTGTATGAGATATCAAATGTGGATGACATGCTCAAATTATCAAAGAAAGAAAGGTGTAATGCAGACGGTATGGATGATAAAGGTCATCTTGTGGCTTTTGTACATTACCGCTTCACCATCGAGGAAGAAATTCCTGTTCTTTATGTGTATGAATTACAGCTTG</genome_strand>
        <mrna_strand>TGACAAGGAAAGAG...............................................................................................................ATATTAGAAAAGAAGAAGAAGGTGCAAGAGATAATCAAAGCTGCTGTTTCTCAGAAAGACCTTTTTTTCTTCCTTCCCAACTTTTCGCCATTACAAGAAAAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTCTGTGTACTTGGACTCGGGATGCGGAGATAGCCTTTCTTCTCCAGTAAAGCAGTATATTCAGAATCTCCTCAAG......................................................................................GTATAGGCCTTTTACAGGTGAATATGGAGGCATCCTATGGAACAGAGTGGCCTGTAGAAGAGAAGGTGAAGCGCAGGGAGATGGTTTCTTCTGAAGCTCGTTATATATTTGTGTATGAGATATCAAATGTGGATGACATGCTCAAATTATCAAAGAAAGAAAGGTGTAATGCAGACGGTATGGATGATAAAGGTCATCTTGTGGCTTTTGTACATTACCGCTTCACCATCGAGGAAGAAATTCCTGTTCTTTATGTGTATGAATTACAGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700283" ref_strand="+" ref_description="SGN-E700283 [FA12CG04]">
      <seq>gaaagcagctccaatctctcattctcaagatggctgtcggtaagaacaagaggatttcaaagggaaagaagggaggaaagaagaaggcggccgattcatatgctaagaaggattggtatgacattagggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcagatccgtcgcaagatggttgagatcatgagaaaccaagcaagttcctgtgacctgaaggagttggtagcaaagttcatccctgaatcaattggtagagagattgagaaagctacttcaagcatttttccactccaaaatgtttatattcgcaaagtgaagatcctgaaggcccctaaattcgatcttggcaagctgatggaggtgcatggtgactattcagaagatgttggtgtgaagttggatcgacccgctgaagaaacagtggctgaggcagagacagaggtccctggagcttagactttgtttcattttggatttcctgtctgaatatggattctagtcttctaaaattttgcatttgttttagttgagtttgtcnaaggcgtgacctaccaaaattttggatctatttattttggttatgcttgatgntaaactattcacaatttaagatatcgtttttcagctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55871" stop="52474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55571" g_stop="55532" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="194" r_length="154" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="332" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="518" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53359" g_stop="53159" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="719" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53158" i_stop="53044" i_length="115">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53043" g_stop="52766" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="997" r_length="278" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E700283" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>997</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55571" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53159"/>
          <exon e_start="53043" e_stop="52766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAGGTAAGTTTGGATTGTTTTCTGTTTCTACTCTCTACATTGGGGCACCATTCATGGATGGTTTGAAAGTGCAATAAATTTATTTTGTTGGAACTACTAATGAGTTATCTTTTTGCAGGTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGACCCGCTGAAGAAACAGTGGCTGAGGCAGAGACAGAGGTCCCTGGAGCTTAGACTTTGTTTCATTTTGGATTTCCTGTCTGAATATGGATTCTAGTCTTCTAAAATTTTGCATTTGTTTTAGTTGAGTTTGTCAAAGGCGTGACCTACCAAAATTTTGGATCTATTTATTTTGGTTATGCTTGATGTTAAACTATTCACAATTTAAGATATCGTTTTTCAGCTAAATCTTTTAA</genome_strand>
        <mrna_strand>GAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGG..................................................................................TAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATTCATATGCTAAGAAGGATTGGTATGACATTAGGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAG...................................................................................................................GTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGACCCGCTGAAGAAACAGTGGCTGAGGCAGAGACAGAGGTCCCTGGAGCTTAGACTTTGTTTCATTTTGGATTTCCTGTCTGAATATGGATTCTAGTCTTCTAAAATTTTGCATTTGTTTTAGTTGAGTTTGTCNAAGGCGTGACCTACCAAAATTTTGGATCTATTTATTTTGGTTATGCTTGATGNTAAACTATTCACAATTTAAGATATCGTTTTTCAGCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368932" ref_strand="+" ref_description="SGN-E368932 [TUS-25-D21](-)">
      <seq>aaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcagatccgtcgcaaaatggttgagatcatgagaaaccaagcaagttcctgtgacctgaaggagttggtagcaaagttcatccctgaatcaattggtagagagattgagaaagctacttcaagcatttttccactccaaaatgtttatattcgcaaagtgaagatcctgaaggcccctaaattcgatcttggcaagctgatggaggtgcatggtgactattcagaaaatgttggtgtgaagttggatcgacccgctgaagaaacagtggctgaggcaaagacaaaggtccctggagcttagactttgtttcattttggatttcctgtctgaatatggattttagtcttttaaaattttgcatttgttttagttgagtttgtcaaaggcgtgacctaccaaaattttggatctatttattttggttatgcttgatgttaaactattcacaatttaagatatcgtttttcagctaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53960" stop="52474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53780" g_stop="53771" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="196" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53359" g_stop="53159" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="397" r_length="201" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53158" i_stop="53044" i_length="115">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53043" g_stop="52775" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="666" r_length="269" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="667" polyA_stop="688"/>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E368932" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53780" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53159"/>
          <exon e_start="53043" e_stop="52775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAGGTAAGTTTGGATTGTTTTCTGTTTCTACTCTCTACATTGGGGCACCATTCATGGATGGTTTGAAAGTGCAATAAATTTATTTTGTTGGAACTACTAATGAGTTATCTTTTTGCAGGTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGACCCGCTGAAGAAACAGTGGCTGAGGCAGAGACAGAGGTCCCTGGAGCTTAGACTTTGTTTCATTTTGGATTTCCTGTCTGAATATGGATTCTAGTCTTCTAAAATTTTGCATTTGTTTTAGTTGAGTTTGTCAAAGGCGTGACCTACCAAAATTTTGGATCTATTTATTTTGGTTATGCTTGATGTTAAACTATTCACAATTTAAGATATCGTTTTTCAGCTAA</genome_strand>
        <mrna_strand>AAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAAATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAG...................................................................................................................GTGCATGGTGACTATTCAGAAAATGTTGGTGTGAAGTTGGATCGACCCGCTGAAGAAACAGTGGCTGAGGCAAAGACAAAGGTCCCTGGAGCTTAGACTTTGTTTCATTTTGGATTTCCTGTCTGAATATGGATTTTAGTCTTTTAAAATTTTGCATTTGTTTTAGTTGAGTTTGTCAAAGGCGTGACCTACCAAAATTTTGGATCTATTTATTTTGGTTATGCTTGATGTTAAACTATTCACAATTTAAGATATCGTTTTTCAGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552114" ref_strand="-" ref_description="SGN-E552114 [cTSB-2-O10]">
      <seq>ttgaaatcagaaacgttggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcagatccgtcgcaagatggttgagatcatgagaaaccaagcaagttcctgtgacctgaaggagttggtagcaaagttcatccctgaatcaattggtagagagattgagaaagctacttcaagcatttttccactccaaaatgtttatattcgcaaagtgaagatcctgaaggcccctaaattcgatcttggcaagctgatggaggtgcatggtgactattcagaagatgttggtgtgaagttggatcgacccgctgaagaaacagtggctgaggcagagacagaggtccctggagcttagactttgtttcattttggatttcctgtctgaatatggattctagtcttctaaaattttgcatttgttttagttgagtttgtcaaaggcgtgacctaccaaaattttggatctatttattttggttatgcttgatgttaaactattcacaatttaagatatcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55648" stop="52486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55348" g_stop="55296" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="191" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="377" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53359" g_stop="53159" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="578" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53158" i_stop="53044" i_length="115">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53043" g_stop="52786" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="836" r_length="258" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E552114" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552114" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="55348" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53159"/>
          <exon e_start="53043" e_stop="52786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAGGTAAGTTTGGATTGTTTTCTGTTTCTACTCTCTACATTGGGGCACCATTCATGGATGGTTTGAAAGTGCAATAAATTTATTTTGTTGGAACTACTAATGAGTTATCTTTTTGCAGGTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGACCCGCTGAAGAAACAGTGGCTGAGGCAGAGACAGAGGTCCCTGGAGCTTAGACTTTGTTTCATTTTGGATTTCCTGTCTGAATATGGATTCTAGTCTTCTAAAATTTTGCATTTGTTTTAGTTGAGTTTGTCAAAGGCGTGACCTACCAAAATTTTGGATCTATTTATTTTGGTTATGCTTGATGTTAAACTATTCACAATTTAAGATATCGT</genome_strand>
        <mrna_strand>TTGAAATCAGAAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAG...................................................................................................................GTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGACCCGCTGAAGAAACAGTGGCTGAGGCAGAGACAGAGGTCCCTGGAGCTTAGACTTTGTTTCATTTTGGATTTCCTGTCTGAATATGGATTCTAGTCTTCTAAAATTTTGCATTTGTTTTAGTTGAGTTTGTCAAAGGCGTGACCTACCAAAATTTTGGATCTATTTATTTTGGTTATGCTTGATGTTAAACTATTCACAATTTAAGATATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697452" ref_strand="+" ref_description="SGN-E697452 [FA03AA06]">
      <seq>cggtcagaggctccaatctnntattctcaagatggntgtcggcaataacaagaggannncaaagggaaagaagggaggaaagaagaaggcggncganccanatgctaagaaggattgctatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcagatccgtcgcaagatggttgagatcatgagaaaccaagcaagttcctgtgacctgaaggagttggtagcaaagttcatccctgaatcaattggtagagagattgagaaagctacttcaagcatttttccactccaaaatgtttatattcgcaaagtgaagatcctgaaggcccctaaattcgatcttggcaagctgatggaggtgcatggtgactattcagaagatgttggtgtgaagttggatcgacccgctgaagaaacagtggctgaggcagagacagaggtccctggagcttagactttgtttcattttggatttcctgtctgaatatggattctagtcttctaaaattttgcatttgttttagttgagtttgtcaaaggcgtgacctacccaaattttggatctatttatttgggtatgcttgaaggtaaactattcacaatttaagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55732" stop="52490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55573" g_stop="55532" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.786"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="0.79"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="196" r_length="154" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="334" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="520" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53359" g_stop="53159" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="721" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53158" i_stop="53044" i_length="115">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53043" g_stop="52793" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="971" r_length="250" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E697452" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>972</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55573" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53159"/>
          <exon e_start="53043" e_stop="52793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAGGTAAGTTTGGATTGTTTTCTGTTTCTACTCTCTACATTGGGGCACCATTCATGGATGGTTTGAAAGTGCAATAAATTTATTTTGTTGGAACTACTAATGAGTTATCTTTTTGCAGGTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGACCCGCTGAAGAAACAGTGGCTGAGGCAGAGACAGAGGTCCCTGGAGCTTAGACTTTGTTTCATTTTGGATTTCCTGTCTGAATATGGATTCTAGTCTTCTAAAATTTTGCATTTGTTTTAGTTGAGTTTGTCAAAGGCGTGACCTACCAAAATTTTGGATCTATTTATTTTGGTTATGCTTGATGTTAAACTATTCACAATTTAAG</genome_strand>
        <mrna_strand>CGGTCAGAGGCTCCAATCTNNTATTCTCAAGATGGNTGTCGG..................................................................................CAATAACAAGAGGANNNCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGNCGANCCANATGCTAAGAAGGATTGCTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAG...................................................................................................................GTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGACCCGCTGAAGAAACAGTGGCTGAGGCAGAGACAGAGGTCCCTGGAGCTTAGACTTTGTTTCATTTTGGATTTCCTGTCTGAATATGGATTCTAGTCTTCTAAAATTTTGCATTTGTTTTAGTTGAGTTTGTCAAAGGCGTGACCTACCCAAATTTTGGATCTATTTA-TTTGGGTATGCTTGAAGGTAAACTATTCACAATTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730137" ref_strand="+" ref_description="SGN-E730137 [LA23AG04]">
      <seq>agcagctccaatctctcattctcaagatggctgtcggtaagaacaagaggatttcaaagggaaagaagggaggaaagaagaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcagatccgtcgcaagatggttgagatcatgagaaaccaagcaagttcctgtgacctgaaggagttggtagcaaagttcatccctgaatcaattggtagagagattgagaaagctacttcaagcatttttccactccaaaatgtttatattcgcaaagtgaagatcctgaaggcccctaaattcgatcttggcaagctgatggaggtgcatggtgactattcagaagatgttggtgtgaagttggatcgacccgctgaagaaacagtggctgaggcagagacagaggtccctggagcttagacttggttcattttggatttcctgtctgaatatggattctagtcttctaaaattttgcatttgttttaattgaatttgtcaaaggcgtgacctaacaaaattttggatctatttattttgggtatgcttgaggttaaactattcccaatttaaaaatcgtttttcagctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55868" stop="52474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55568" g_stop="55532" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="191" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="329" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="515" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53359" g_stop="53159" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="716" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53158" i_stop="53044" i_length="115">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53043" g_stop="52793" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="966" r_length="250" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="982" polyA_stop="1003"/>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E730137" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>967</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55568" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53159"/>
          <exon e_start="53043" e_stop="52793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAGGTAAGTTTGGATTGTTTTCTGTTTCTACTCTCTACATTGGGGCACCATTCATGGATGGTTTGAAAGTGCAATAAATTTATTTTGTTGGAACTACTAATGAGTTATCTTTTTGCAGGTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGACCCGCTGAAGAAACAGTGGCTGAGGCAGAGACAGAGGTCCCTGGAGCTTAGACTTTGTTTCATTTTGGATTTCCTGTCTGAATATGGATTCTAGTCTTCTAAAATTTTGCATTTGTTTTAGTTGAGTTTGTCAAAGGCGTGACCTACCAAAATTTTGGATCTATTTATTTTGGTTATGCTTGATGTTAAACTATTCACAATTTAAG</genome_strand>
        <mrna_strand>AGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGG..................................................................................TAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAG...................................................................................................................GTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGACCCGCTGAAGAAACAGTGGCTGAGGCAGAGACAGAGGTCCCTGGAGCTTAGAC-TTGGTTCATTTTGGATTTCCTGTCTGAATATGGATTCTAGTCTTCTAAAATTTTGCATTTGTTTTAATTGAATTTGTCAAAGGCGTGACCTAACAAAATTTTGGATCTATTTATTTTGGGTATGCTTGAGGTTAAACTATTCCCAATTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E695525" ref_strand="+" ref_description="SGN-E695525 [LH_Ea06M03](-)">
      <seq>aagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatggaatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcagatccgtcgcaaaatggttgagatcatgagaaaccaagcaagttcctgtgacctgaaggagttggtcgcaaagttcatccctgaatcaattggtagagagattgagaaagctacttcaagcatttttccactccaaaatgtttatattcgcaaagtcaagatcctgaaggcccctaaatttgatcttggcaagctgatggaggtgcatggtgactattcagaagatgttggtgtgaagttggatcgacccgctgaagaaacagtggctgaggcagagacagaggtccctggagcttagactttgtttcattttggatttcctgtctgaatatggattctagtcttttaaaattttgcatttgttttagttgagtttaaaggaggcgtgacctaccaaaattttggatttatttctttaagggatgcttgatgttaaactattcacaatttagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54210" stop="52490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53999" g_stop="53997" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53996" i_stop="53909" i_length="88">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="141" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="327" r_length="186" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53359" g_stop="53159" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="528" r_length="201" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53158" i_stop="53044" i_length="115">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53043" g_stop="52796" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="776" r_length="248" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="777" polyA_stop="793"/>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E695525" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53999" e_stop="53997"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53159"/>
          <exon e_start="53043" e_stop="52796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAGGTAAGTTTGGATTGTTTTCTGTTTCTACTCTCTACATTGGGGCACCATTCATGGATGGTTTGAAAGTGCAATAAATTTATTTTGTTGGAACTACTAATGAGTTATCTTTTTGCAGGTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGACCCGCTGAAGAAACAGTGGCTGAGGCAGAGACAGAGGTCCCTGGAGCTTAGACTTTGTTTCATTTTGGATTTCCTGTCTGAATATGGATTCTAGTCTTCTAAAATTTTGCATTTGTTTTAGTTGAGTTTGTCAAAGGCGTGACCTACCAAAATTTTGGATCTATTTATTTTGGTTATGCTTGATGTTAAACTATTCACAATTT</genome_strand>
        <mrna_strand>AAG........................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGAATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAAATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTCGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTCAAGATCCTGAAGGCCCCTAAATTTGATCTTGGCAAGCTGATGGAG...................................................................................................................GTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGACCCGCTGAAGAAACAGTGGCTGAGGCAGAGACAGAGGTCCCTGGAGCTTAGACTTTGTTTCATTTTGGATTTCCTGTCTGAATATGGATTCTAGTCTTTTAAAATTTTGCATTTGTTTTAGTTGAGTTTAAAGGAGGCGTGACCTACCAAAATTTTGGATTTATTTCTTTAAGGGATGCTTGATGTTAAACTATTCACAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731368" ref_strand="+" ref_description="SGN-E731368 [LA26DF09]">
      <seq>cagtaactccaatctctcattctcaagatggctgtcggtaaccataagaggatttcaaagggaaagaagggaggaaagaagaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcagatccgtcgcaagatggttgagatcatgagaaaccaagcaagttcctgtgacctgaaggagttggtagcaaagttcatccctgaatcaattggtagagagattgagaaagctacttcaagcatttttccactccaaaatgtttatattcgcaaagtgaagatcctgaaggcccctanattcgatcttggcaagctgatggaggtgcatggtgactattcagaagatgttggtgtgaagttggatcgacccgctgaagaaacagtggctgaggcagagacagaggtccctggagcttagactttgtttcattttggatttcctgtctgaatatggattctagtcttctaaaatttgcatttgttttagttgagtttgtcaaagcgtgacctaccaaaaatttggatctatttattttgggtatgcctgatgttaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55868" stop="52507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55569" g_stop="55532" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="192" r_length="154" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="330" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="516" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53359" g_stop="53159" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="717" r_length="201" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53158" i_stop="53044" i_length="115">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53043" g_stop="52807" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="952" r_length="235" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E731368" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>954</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55569" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53159"/>
          <exon e_start="53043" e_stop="52807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAGGTAAGTTTGGATTGTTTTCTGTTTCTACTCTCTACATTGGGGCACCATTCATGGATGGTTTGAAAGTGCAATAAATTTATTTTGTTGGAACTACTAATGAGTTATCTTTTTGCAGGTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGACCCGCTGAAGAAACAGTGGCTGAGGCAGAGACAGAGGTCCCTGGAGCTTAGACTTTGTTTCATTTTGGATTTCCTGTCTGAATATGGATTCTAGTCTTCTAAAATTTTGCATTTGTTTTAGTTGAGTTTGTCAAAGGCGTGACCTACCAAAATTTTGGATCTATTTATTTTGGTTATGCTTGATGTTAAACT</genome_strand>
        <mrna_strand>CAGTAACTCCAATCTCTCATTCTCAAGATGGCTGTCGG..................................................................................TAACCATAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTANATTCGATCTTGGCAAGCTGATGGAG...................................................................................................................GTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGACCCGCTGAAGAAACAGTGGCTGAGGCAGAGACAGAGGTCCCTGGAGCTTAGACTTTGTTTCATTTTGGATTTCCTGTCTGAATATGGATTCTAGTCTTCTAAAA-TTTGCATTTGTTTTAGTTGAGTTTGTCAAA-GCGTGACCTACCAAAAATTTGGATCTATTTATTTTGGGTATGCCTGATGTTAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726488" ref_strand="+" ref_description="SGN-E726488 [LA11DH01]">
      <seq>gaaagcagctccaatctctcattctcaagatggctgtcggtaagaacaagaggatttcaaagggaaagaagggaggaaagaagaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcagatccgtcgcaagatggttgagatcatgagaaaccaagcaagttcctgtgacctgaaggagttggtagcaaagttcatccctgaatcaattggtagagagattgagaaagctacttcaagcatttttccactccaaaatgtttatattcgcaaagtgaagatcctgaaggcccctaaattcgatcttggcaagctgatggaggtgcatggtgactattcagaagatgttggtgtgaagttggatcgacccgctgaagaaacagtggctgaggcagagacagaggtccctggagcttagactttgtttcattttggatttcctgtctgaatatggattctagtcttctaaaattttgcatttgttttagttgagtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55871" stop="52569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55571" g_stop="55532" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="194" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="332" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="518" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53359" g_stop="53159" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="719" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53158" i_stop="53044" i_length="115">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53043" g_stop="52869" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="894" r_length="175" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E726488" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>894</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55571" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53159"/>
          <exon e_start="53043" e_stop="52869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAGGTAAGTTTGGATTGTTTTCTGTTTCTACTCTCTACATTGGGGCACCATTCATGGATGGTTTGAAAGTGCAATAAATTTATTTTGTTGGAACTACTAATGAGTTATCTTTTTGCAGGTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGACCCGCTGAAGAAACAGTGGCTGAGGCAGAGACAGAGGTCCCTGGAGCTTAGACTTTGTTTCATTTTGGATTTCCTGTCTGAATATGGATTCTAGTCTTCTAAAATTTTGCATTTGTTTTAGTTGAGTTTG</genome_strand>
        <mrna_strand>GAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGG..................................................................................TAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAG...................................................................................................................GTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGACCCGCTGAAGAAACAGTGGCTGAGGCAGAGACAGAGGTCCCTGGAGCTTAGACTTTGTTTCATTTTGGATTTCCTGTCTGAATATGGATTCTAGTCTTCTAAAATTTTGCATTTGTTTTAGTTGAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736846" ref_strand="+" ref_description="SGN-E736846 [LC07CB08]">
      <seq>ccataacccccaaccccccgtctgaaagcagctccaatctctcattctcaagatggctgtcggtaagaacaagaggatttcaaagggaaagaagggaggaaagaagaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcagatccgtcgcaagatggttgagatcatgagaaaccaagcaagttcctgtgacctgaaggagttggtagcaaagttcatccctgaatcaattggtagagagattgagaaagctacttcaagcatttttccactccaaaatgtttatattcgcaaagtgaagatcctgaaggcccctaaattcgatcttggcaagctgatggaggtgcatggtgactattcagaagatgttggtgtgaagttggatcgacccgctgaagaaacagtggctgaggcagagacagaggtccctggagcttagactttgtttcattttggatttcctgtctgaatatggattctagtcttctaaaattttgcatttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55894" stop="52582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55594" g_stop="55532" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="217" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="355" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="541" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53359" g_stop="53159" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="742" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53158" i_stop="53044" i_length="115">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53043" g_stop="52882" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="904" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E736846" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55594" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53159"/>
          <exon e_start="53043" e_stop="52882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATAACCCCCAACCCCCCGTCTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAGGTAAGTTTGGATTGTTTTCTGTTTCTACTCTCTACATTGGGGCACCATTCATGGATGGTTTGAAAGTGCAATAAATTTATTTTGTTGGAACTACTAATGAGTTATCTTTTTGCAGGTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGACCCGCTGAAGAAACAGTGGCTGAGGCAGAGACAGAGGTCCCTGGAGCTTAGACTTTGTTTCATTTTGGATTTCCTGTCTGAATATGGATTCTAGTCTTCTAAAATTTTGCATTTGTT</genome_strand>
        <mrna_strand>CCATAACCCCCAACCCCCCGTCTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGG..................................................................................TAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAG...................................................................................................................GTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGACCCGCTGAAGAAACAGTGGCTGAGGCAGAGACAGAGGTCCCTGGAGCTTAGACTTTGTTTCATTTTGGATTTCCTGTCTGAATATGGATTCTAGTCTTCTAAAATTTTGCATTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710440" ref_strand="+" ref_description="SGN-E710440 [FA55BG05]">
      <seq>ctcattctcaagatggctgtcggtaagaacaagaggatttcaaagggaaagaagggaggaaagaagaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcagatccgtcgcaagatggttgagatcatgagaaaccaagcaagttcctgtgacctgaaggagttggtagcaaagttcatccctgaatcaattggtagagagattgagaaagctacttcaagcatttttccactccaaaatgtttatattcgcaaagtgaagatcctgaaggcccctaaattcgatcttggcaagctgatggaggtgcatggtgactattcagaagatgttggtgtgaagttggatcgacccgctgaagaaacagtggctgaggcagagacagaggtccctggagcttaaactttgtttcattttggatttccctgtctgaatatggattctagtcttctaaaattttgcatttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55854" stop="52582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55554" g_stop="55532" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="177" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="315" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="501" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53359" g_stop="53159" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="702" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53158" i_stop="53044" i_length="115">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53043" g_stop="52882" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="865" r_length="163" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E710440" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55554" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53159"/>
          <exon e_start="53043" e_stop="52882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAGGTAAGTTTGGATTGTTTTCTGTTTCTACTCTCTACATTGGGGCACCATTCATGGATGGTTTGAAAGTGCAATAAATTTATTTTGTTGGAACTACTAATGAGTTATCTTTTTGCAGGTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGACCCGCTGAAGAAACAGTGGCTGAGGCAGAGACAGAGGTCCCTGGAGCTTAGACTTTGTTTCATTTTGGATTT-CCTGTCTGAATATGGATTCTAGTCTTCTAAAATTTTGCATTTGTT</genome_strand>
        <mrna_strand>CTCATTCTCAAGATGGCTGTCGG..................................................................................TAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAG...................................................................................................................GTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGACCCGCTGAAGAAACAGTGGCTGAGGCAGAGACAGAGGTCCCTGGAGCTTAAACTTTGTTTCATTTTGGATTTCCCTGTCTGAATATGGATTCTAGTCTTCTAAAATTTTGCATTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739143" ref_strand="+" ref_description="SGN-E739143 [LC16BB06]">
      <seq>ccataacccccaaccccccgtctgaaagcagctccaatctctcattctcaagatggctgtcggtaagaacaagaggatttcaaagggaaagaagggaggaaagaagaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcagatccgtcgcaagatggttgagatcatgagaaaccaagcaagttcctgtgacctgaaggagttggtagcaaagttcatccctgaatcaattggtagagagattgagaaagctacttcaagcatttttccactccaaaatgtttatattcgcaaagtgaagatcctgaaggcccctaaattcgatcttggcaagctgatggaggtgcatggtgactattcagaagatgttggtgtgaagttggatcgacccgctgaagaaacagtggctgaggcagagacagaggtccctggagcttagactttgtttcattttggatttcctgtctgaatatggattctagtcttctaaaattttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55894" stop="52589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55594" g_stop="55532" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="217" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="355" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="541" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53359" g_stop="53159" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="742" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53158" i_stop="53044" i_length="115">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53043" g_stop="52889" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="897" r_length="155" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E739143" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55594" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53159"/>
          <exon e_start="53043" e_stop="52889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATAACCCCCAACCCCCCGTCTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAGGTAAGTTTGGATTGTTTTCTGTTTCTACTCTCTACATTGGGGCACCATTCATGGATGGTTTGAAAGTGCAATAAATTTATTTTGTTGGAACTACTAATGAGTTATCTTTTTGCAGGTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGACCCGCTGAAGAAACAGTGGCTGAGGCAGAGACAGAGGTCCCTGGAGCTTAGACTTTGTTTCATTTTGGATTTCCTGTCTGAATATGGATTCTAGTCTTCTAAAATTTTGC</genome_strand>
        <mrna_strand>CCATAACCCCCAACCCCCCGTCTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGG..................................................................................TAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAG...................................................................................................................GTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGACCCGCTGAAGAAACAGTGGCTGAGGCAGAGACAGAGGTCCCTGGAGCTTAGACTTTGTTTCATTTTGGATTTCCTGTCTGAATATGGATTCTAGTCTTCTAAAATTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698563" ref_strand="+" ref_description="SGN-E698563 [FA06DB07]">
      <seq>ccggtaagcagctccaatctctcattctcaagatggctgtcggtaagaacaagaggatttcaaagggaaagaagggaggaaagaagaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcagatccgtcgcaagatggttgagatcatgagaaaccaagcaagttcctgtgacctgaaggagttggtagcaaagttcatccctgaatcaattggtagagagattgagaaagctacttcaagcatttttccactccaaaatgtttatattcgcaaagtgaagatcctgaaggcccctaaattcgatcttggcaagctgatggaggtgcatggtgactattcagaagatgttggtgtgaagttggatcgacccgctgaagaaacagtggctgaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55873" stop="52673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55574" g_stop="55532" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="0.93"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="197" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="335" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="521" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53359" g_stop="53159" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="722" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53158" i_stop="53044" i_length="115">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53043" g_stop="52973" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="793" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E698563" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55574" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53159"/>
          <exon e_start="53043" e_stop="52973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAGGTAAGTTTGGATTGTTTTCTGTTTCTACTCTCTACATTGGGGCACCATTCATGGATGGTTTGAAAGTGCAATAAATTTATTTTGTTGGAACTACTAATGAGTTATCTTTTTGCAGGTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGACCCGCTGAAGAAACAGTGGCTGAGGC</genome_strand>
        <mrna_strand>CCGGTAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGG..................................................................................TAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAG...................................................................................................................GTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGACCCGCTGAAGAAACAGTGGCTGAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730805" ref_strand="+" ref_description="SGN-E730805 [LA25BA08]">
      <seq>cgatagcagctccaatctctcattctcaagatggctgtcggtaagaacaagaggatttcaaagggaaagaagggaggaaagaagaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcagatccgtcgcaagatggttgagatcatgagaaaccaagcaagttcctgtgacctgaaggagttggtagcaaagttcatccctgaatcaattggtagagagattgagaaagctacttcaagcatttttccactccaaaatgtttatattcgcaaagtgaagatcctgaaggcccctaaattcgatcttggcaagctgatggaggtgcatggtgactattcagaagatgttggtgtgaagttggatcgacccgctgaagaaacagtggctgaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55871" stop="52673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55572" g_stop="55532" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="0.95"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="195" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="333" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="519" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53359" g_stop="53159" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="720" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53158" i_stop="53044" i_length="115">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53043" g_stop="52973" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="791" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E730805" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55572" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53159"/>
          <exon e_start="53043" e_stop="52973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAGGTAAGTTTGGATTGTTTTCTGTTTCTACTCTCTACATTGGGGCACCATTCATGGATGGTTTGAAAGTGCAATAAATTTATTTTGTTGGAACTACTAATGAGTTATCTTTTTGCAGGTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGACCCGCTGAAGAAACAGTGGCTGAGGC</genome_strand>
        <mrna_strand>CGATAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGG..................................................................................TAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAG...................................................................................................................GTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGACCCGCTGAAGAAACAGTGGCTGAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254121" ref_strand="+" ref_description="SGN-E254121 [cLEG-34-E9]">
      <seq>aaggatgaggatcangctttcaggaaaatccgtttgagagcagaagatgtgcaagggaggaatgttctcacaaacttccatggaatggatttcacaacagataagctgaggtctctggtccgcaaatggcagactttgattgaggcccatgttgatgtcaagactacagacagctatactctaaggatgttctgtattgcttttacaaagaagcgtccaaaccaacagaagcgtacctgctatgcccagagcagccagatccgtcagatccgcaggaagatggttgagatcatgaggaaccaagccagttcctgtgacttgaaggagttagttgcaaaattcatccccgaatcaattggcagggagattgagaaagcaacttccagcatcttccccctacaaaatgtctatattcgaaaggtcaagatcctcaaggcccctaaatttgaccttggcaagctgatggaggttcatggtgactattcagaagatgttggtgtgaagttggatcggccagctgatgagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54151" stop="52685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53851" g_stop="53771" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="267" r_length="186" r_score="0.919"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.972" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53359" g_stop="53159" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="468" r_length="201" r_score="0.876"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53158" i_stop="53044" i_length="115">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53043" g_stop="52985" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="527" r_length="59" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E254121" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53851" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53159"/>
          <exon e_start="53043" e_stop="52985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAGGTAAGTTTGGATTGTTTTCTGTTTCTACTCTCTACATTGGGGCACCATTCATGGATGGTTTGAAAGTGCAATAAATTTATTTTGTTGGAACTACTAATGAGTTATCTTTTTGCAGGTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGACCCGCTGAAGAAAC</genome_strand>
        <mrna_strand>AAGGATGAGGATCANGCTTTCAGGAAAATCCGTTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTTCTCACAAACTTCCAT......................................................................................................................GGAATGGATTTCACAACAGATAAGCTGAGGTCTCTGGTCCGCAAATGGCAGACTTTGATTGAGGCCCATGTTGATGTCAAGACTACAGACAGCTATACTCTAAGGATGTTCTGTATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACCTGCTATGCCCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGCAGGAAGATGGTTGAGATCATGAGGAACCAAGCCAGTTCCTGTGACTTGAAGGAGTTAGTTGCAAAATTCATCCCCGAATCAATTGGCAGGGAGATTGAGAAAGCAACTTCCAGCATCTTCCCCCTACAAAATGTCTATATTCGAAAGGTCAAGATCCTCAAGGCCCCTAAATTTGACCTTGGCAAGCTGATGGAG...................................................................................................................GTTCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGGCCAGCTGATGAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242454" ref_strand="+" ref_description="SGN-E242454 [cLED-30-L8]">
      <seq>actcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcagatccgtcgcaagatggttgagatcatgagaaaccaagcaagttcctgtgacctgaaggagttggtagcaaagttcatccctgaatcaattggtagagagattgagaaagctacttcaagcatttttccactccaaaatgtttatattcgcaaagtgaagatcctgaaggcccctaaattcgatcttggcaagctgatggaggtgcatggtgactattcagaagatgttggtgtgaagttggatcgacccgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54210" stop="52692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="153" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="339" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53359" g_stop="53159" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="540" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53158" i_stop="53044" i_length="115">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53043" g_stop="52992" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="592" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E242454" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53159"/>
          <exon e_start="53043" e_stop="52992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAGGTAAGTTTGGATTGTTTTCTGTTTCTACTCTCTACATTGGGGCACCATTCATGGATGGTTTGAAAGTGCAATAAATTTATTTTGTTGGAACTACTAATGAGTTATCTTTTTGCAGGTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGACCCGCTG</genome_strand>
        <mrna_strand>ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAG...................................................................................................................GTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGACCCGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719620" ref_strand="+" ref_description="SGN-E719620 [FC08BE12]">
      <seq>ataacccccaaccccccgtctgaaagcagctccactctctcattctcaagatggctgtcggtaagaacaagaggatttcaaagggaaagaagggaggaaagaagaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcaaaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcagatccgtcgcaagatggttcaaatcatgagaaaccaagcaagttcctgtgacctgaaggagttggtagcaaagttcatccctgaatcaattggtagagagattgagaaagctacttcaagcatttttccactccaaaatgtttatattcgcaaagtgaagatcctgaaggcccctaaattcgatcttggcaagctgatggaggtgcatggtgactattcagaagatgttggtgtgaagttggatcgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55892" stop="52697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55592" g_stop="55532" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="215" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="353" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="539" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53359" g_stop="53159" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="740" r_length="201" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53158" i_stop="53044" i_length="115">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53043" g_stop="52997" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="787" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E719620" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55592" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53159"/>
          <exon e_start="53043" e_stop="52997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACCCCCAACCCCCCGTCTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAGGTAAGTTTGGATTGTTTTCTGTTTCTACTCTCTACATTGGGGCACCATTCATGGATGGTTTGAAAGTGCAATAAATTTATTTTGTTGGAACTACTAATGAGTTATCTTTTTGCAGGTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGACC</genome_strand>
        <mrna_strand>ATAACCCCCAACCCCCCGTCTGAAAGCAGCTCCACTCTCTCATTCTCAAGATGGCTGTCGG..................................................................................TAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAAAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAGATGGTTCAAATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAG...................................................................................................................GTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286417" ref_strand="+" ref_description="SGN-E286417 [cLES-11-H14]">
      <seq>ttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcagatccgtcgcaagatggttgagatcatgagaaaccaagcaagttcctgtgacctgaaggagttggtagcaaagttcatccctgaatcaattggtagagagattgagaaagctacttcaagcatttttccactccaaaatgtttatattcgcaaagtgaagatcctgaaggcccctaaattcgatcttggcaagctgatggaggtgcatggtgactattcagaagatgttggtgtgaagttggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54118" stop="52702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53818" g_stop="53771" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="234" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53359" g_stop="53159" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="435" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53158" i_stop="53044" i_length="115">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53043" g_stop="53002" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="477" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E286417" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53818" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53159"/>
          <exon e_start="53043" e_stop="53002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAGGTAAGTTTGGATTGTTTTCTGTTTCTACTCTCTACATTGGGGCACCATTCATGGATGGTTTGAAAGTGCAATAAATTTATTTTGTTGGAACTACTAATGAGTTATCTTTTTGCAGGTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGAT</genome_strand>
        <mrna_strand>TTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAG...................................................................................................................GTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691685" ref_strand="+" ref_description="SGN-E691685 [LH_Ea06M03]">
      <seq>ccgttccaatctctcattctcaagatggctgtcggtaagaaccataggatttcaaagggaaagaagggaggaaagaagaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaacccttgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatggaatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcagatccgtcgcaaaatggttgagatcatgagaaaccaagcaagttcctgtgacctgaaggagttggtcgcaaagttcatccctgaatcaattggtagagagattgagaaagctacttcaagcatttttccactccaaaatgtttatattcgcaaagtcaagatcctgaaggcccctaaatttgatcttggcaagctgatggaggtgcatggtgactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55866" stop="52729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55566" g_stop="55532" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="189" r_length="154" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="327" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="513" r_length="186" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53359" g_stop="53159" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="714" r_length="201" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53158" i_stop="53044" i_length="115">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53043" g_stop="53029" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="729" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E691685" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55566" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53159"/>
          <exon e_start="53043" e_stop="53029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAGGTAAGTTTGGATTGTTTTCTGTTTCTACTCTCTACATTGGGGCACCATTCATGGATGGTTTGAAAGTGCAATAAATTTATTTTGTTGGAACTACTAATGAGTTATCTTTTTGCAGGTGCATGGTGACTAT</genome_strand>
        <mrna_strand>CCGTTCCAATCTCTCATTCTCAAGATGGCTGTCGG..................................................................................TAAGAACCATAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTTGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGAATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAAATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTCGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTCAAGATCCTGAAGGCCCCTAAATTTGATCTTGGCAAGCTGATGGAG...................................................................................................................GTGCATGGTGACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340928" ref_strand="+" ref_description="SGN-E340928 [cTOF-5-A16]">
      <seq>gcagctccaatctctcattctcaagatggctgtcggtaagaacaagaggatttcaaagggaaagaagggaggaaagaagaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcagatccgtcgcaagatggttgagatcatgagaaaccaagcaagttcctgtgacctgaaggagttggtagcaaagttcatccctgaatcaattggtagagagattgagaaagctacttcaagcatttttccactccaaaatgtttatattcgcaaagtgaagatcctgaaggcccctaaattcgatcttggcaagctgatggaggtgcatggtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55867" stop="52857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55567" g_stop="55532" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="190" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="328" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="514" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53359" g_stop="53159" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="715" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53158" i_stop="53044" i_length="115">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53043" g_stop="53032" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="727" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E340928" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55567" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53159"/>
          <exon e_start="53043" e_stop="53032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAGGTAAGTTTGGATTGTTTTCTGTTTCTACTCTCTACATTGGGGCACCATTCATGGATGGTTTGAAAGTGCAATAAATTTATTTTGTTGGAACTACTAATGAGTTATCTTTTTGCAGGTGCATGGTGAC</genome_strand>
        <mrna_strand>GCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGG..................................................................................TAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAG...................................................................................................................GTGCATGGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315499" ref_strand="+" ref_description="SGN-E315499 [cTOA-22-H24]">
      <seq>ccgtctgaaagcagctccaatctctcattctcaagatggctgtcggtaagaacaagaggatttcaaagggaaagaagggaggaaagaagaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcagatccgtcgcaagatggttgagatcatgagaaaccaagcaagttcctgtgacctgaaggagttggtagcaaagttcatccctgaatcaattggtagagagattgagaaagctacttncagcatttttccactccaaaatgtttatattcgcaaagtgaagatcctgaaggcccctaaattcgatctttggcagctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55877" stop="52862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55577" g_stop="55532" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="200" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="338" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="524" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53359" g_stop="53162" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="722" r_length="198" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E315499" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55577" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTCTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATG</genome_strand>
        <mrna_strand>CCGTCTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGG..................................................................................TAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTNCAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTTGGCAGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213869" ref_strand="+" ref_description="SGN-E213869 [cLEC-76-B24]">
      <seq>ttccataacccccaaccccccgtctgaaagcagctccaatctctcattctcaagatggctgtcggtaagaacaagaggatttcaaagggaaagaagggaggaaagaagaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcagatccgtcgcaagatggttgagatcatgagaaaccaagcaagttcctgtgacctgaaggagttggtagcaaagttcatccctgaatcaattggtagagagattgagaaagctacttcaagcatttttccactccaaaatgtttatattcgcaaagtgaagatcctgaaggcccctaaattcgatcttggcaagctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55896" stop="52863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55596" g_stop="55532" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="219" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="357" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="543" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53359" g_stop="53163" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="740" r_length="197" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E213869" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55596" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATAACCCCCAACCCCCCGTCTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGAT</genome_strand>
        <mrna_strand>TTCCATAACCCCCAACCCCCCGTCTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGG..................................................................................TAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728816" ref_strand="+" ref_description="SGN-E728816 [LA19AB11]">
      <seq>ctgaaagcagctccatnctctcattctcaagatggctgtcggtaagaacaagaggatttcaaagggaaagaagggaggaaagaagaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcagatccgtcgcaagatggttgagatcatgagaaaccaagcaagttcctgtgacctgaaggagttggtagcaaagttcatccctgaatcaattggtagagagattgagaaagctacttcaagcatttttccactccaaaatgtttatattcgcaaagtgaagatcctgaaggcccctaaattcgatcttggcaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55873" stop="52865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55573" g_stop="55532" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="0.95"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="196" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="334" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="520" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53359" g_stop="53165" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="715" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E728816" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55573" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTG</genome_strand>
        <mrna_strand>CTGAAAGCAGCTCCATNCTCTCATTCTCAAGATGGCTGTCGG..................................................................................TAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213750" ref_strand="+" ref_description="SGN-E213750 [cLEC-76-A23]">
      <seq>ttccataacccccaaccccccgtctgaaagcagctccaatctctcattctcaagatggctgtcggtaagaacaagaggatttcaaagggaaagaagggaggaaagaagaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcagatccgtcgcaagatggttgagatcatgagaaaccaagcaagttcctgtgacctgaaggagttggtagcaaagttcatccctgaatcaattggtagagagattgagaaagctacttcaagcatttttccactccaaaatgtttatattcgcaaagtgaagatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55896" stop="52895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55596" g_stop="55532" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="219" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="357" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="543" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53359" g_stop="53195" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="708" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E213750" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55596" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATAACCCCCAACCCCCCGTCTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTG</genome_strand>
        <mrna_strand>TTCCATAACCCCCAACCCCCCGTCTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGG..................................................................................TAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727946" ref_strand="+" ref_description="SGN-E727946 [LA16AH08]">
      <seq>caccttaccagagccccccgnctgaaagcagctccaatctctcattctcttgatggctgtcggtaagaacaagaggatttcaaagggaaagaagggaggaaagaagaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcagatccgtcgcaagatggttgagatcatgagaaaccaagcaagttcctgtgacctgaaggagttggtagcaaagttcatccctgaatcaattggtagagagattgagaaagctacttcaagcatttttccactcccaaatgtttatattcgcaaagtgaagatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55885" stop="52895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55595" g_stop="55532" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.828"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="217" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="355" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="541" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53359" g_stop="53195" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="706" r_length="165" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E727946" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55595" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATAACCCCCAACCCCCCGTCTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTG</genome_strand>
        <mrna_strand>CACCTTACC-AGAGCCCCCCGNCTGAAAGCAGCTCCAATCTCTCATTCTCTTGATGGCTGTCGG..................................................................................TAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCCAAATGTTTATATTCGCAAAGTGAAGATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342632" ref_strand="+" ref_description="SGN-E342632 [cTOF-7-B23]">
      <seq>cataacccccaaccccccgtctgaaagcagctccaatctctcattctcaagatggctgtcggtaagaacaagaggatttcaaagggaaagaagggaggaaagaagaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcagatccgtcgcaagatggttgagatcatgagaaaccaagcaagttcctgtgacctgaaagagttggtagcaaagttcatccctgaatcaattggtagagagattgagaaagctacttcaagcatttttccactccaaaatgtttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55893" stop="52915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55593" g_stop="55532" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="216" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="354" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="540" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53359" g_stop="53215" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="685" r_length="145" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E342632" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55593" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAACCCCCAACCCCCCGTCTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATA</genome_strand>
        <mrna_strand>CATAACCCCCAACCCCCCGTCTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGG..................................................................................TAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAAGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368933" ref_strand="+" ref_description="SGN-E368933 [TUS-25-D21]">
      <seq>ccccaaccccccgtctgaaagcagctccaatctctcattctcaagatggctgtcggtaagaacaagaggatttcaaagggaaagaagggaggaaagaagaaggcggccgatccatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcagatccgtcgcaagatggttgagatcatgagaaaccaagcaagttcctgtgacctgaaggagttggtagcaaagttcatccctgaatcaattggtagagagattgagaaagctacttcaagcatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55887" stop="52935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55587" g_stop="55532" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="208" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="346" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="532" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53359" g_stop="53235" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="657" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E368933" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55587" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCAACCCCCCGTCTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTT</genome_strand>
        <mrna_strand>CCCCAACCCCCCGTCTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGG..................................................................................TAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCC--ATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273436" ref_strand="+" ref_description="SGN-E273436 [cLEN-3-B23]">
      <seq>tttgagatcaagaacgtttgcaaaaccctcgtcactaggactcagggggctaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtactcacaaactttcatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggtacactttgattgacgctcatgtggatgtcaagactacagatagctgcactcttaggacgttttgcattgcttttacaaagaagcgttcaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcacatccgtcacacgatggttgagatcatgagaaaccaagcaagttcctgtgacctgaacgagttggtagccaagttgatccctgaatcaattggttgacagattgagaaagctacttcaagcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55649" stop="52937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55349" g_stop="55296" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="192" r_length="138" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="378" r_length="186" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53359" g_stop="53237" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="501" r_length="123" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E273436" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55349" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATT</genome_strand>
        <mrna_strand>TTTGAGATCAAGAACGTTTGCAAAACCCTCGTCACTAGGACTCAGGGGGCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTACTCACAAACTTTCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGTACACTTTGATTGACGCTCATGTGGATGTCAAGACTACAGATAGCTGCACTCTTAGGACGTTTTGCATTGCTTTTACAAAGAAGCGTTCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAC...........................................................................................................ATCCGTCACACGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAACGAGTTGGTAGCCAAGTTGATCCCTGAATCAATTGGTTGACAGATTGAGAAAGCTACTTCAAGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209416" ref_strand="+" ref_description="SGN-E209416 [cLEC-53-J3]">
      <seq>aaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcagatccgtcgcaagatggttgagatcatgagaaaccaagcaagttcctgtgacctgaaggagttggtagcaaagttcatccctgaatcaattggtagagagattgagaaagctacttcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55628" stop="52941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55328" g_stop="55296" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="171" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="357" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53359" g_stop="53242" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="475" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E209416" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55328" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAA</genome_strand>
        <mrna_strand>AAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273334" ref_strand="+" ref_description="SGN-E273334 [cLEN-3-B11]">
      <seq>tttgaaatcaagaactttgccaaaaccctcgtgactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcactttagctgatcttcagaaggatgaggatcacgctttcaggaagatccgcttgagagcagaacatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcacactttgattgaggctcatgtggatgtcaagactacacatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagccgccagatccgtcagatccgtcgcaagatggttgagatcatgagaaaccaagcaagttcctgtgacctgaaagagttggtagccaagatcatccctgaatcaattggttgagagattgagaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55649" stop="52950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55349" g_stop="55296" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="192" r_length="138" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="378" r_length="186" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53359" g_stop="53250" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="488" r_length="110" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E273334" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55349" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGC</genome_strand>
        <mrna_strand>TTTGAAATCAAGAACTTTGCCAAAACCCTCGTGACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCACTTTAGCTGATCTTCAGAAGGATGAGGATCACGCTTTCAGGAAGATCCGCTTGAGAGCAGAACATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCACACTTTGATTGAGGCTCATGTGGATGTCAAGACTACACATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCCGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAAGAGTTGGTAGCCAAGATCATCCCTGAATCAATTGGTTGAGAGATTGAGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303463" ref_strand="+" ref_description="SGN-E303463 [cLEX-2-I7]">
      <seq>cccgtctgaaagcagctccaatctctcattctcaagatggctgtcggtaagaacaagaggatttcaaagggaaagaagggaggaaagaagaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcagatccgtcgcaagatggttgagatcatgagaaaccaagcaagttcctgtgacctgaaggagttggtagcaaagttcatccctgaatcaattggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55878" stop="52966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55578" g_stop="55532" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="201" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="339" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="525" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53359" g_stop="53266" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="619" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E303463" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55578" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGTCTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTA</genome_strand>
        <mrna_strand>CCCGTCTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGG..................................................................................TAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723230" ref_strand="+" ref_description="SGN-E723230 [FC19DD07]">
      <seq>aagggaaagaagggaggaaagaagaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcataagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcaaactttgattgaggctcatgtggatgtcaagactacagatagctccactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcagatccgtcgcaagatggttcaaatcatgagaaaccaagcaagttcctgtgacctgaaggagttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55730" stop="52996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55430" g_stop="55296" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="273" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="459" r_length="186" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53359" g_stop="53296" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="523" r_length="64" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E723230" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55430" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGG</genome_strand>
        <mrna_strand>AAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCATAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAAACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTCCACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAGATGGTTCAAATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205550" ref_strand="+" ref_description="SGN-E205550 [cLEC-21-C19]">
      <seq>ctgaaagcagctccaatctctcattctcaagatggctgtcggtaagaacaagaggatttcaaagggaaagaagggaggaaagaagaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcagatccgtcgcaagatggttgagatcatgagaaaccaagcaagttcctgtgacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55873" stop="53006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55573" g_stop="55532" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="196" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="334" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="520" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53359" g_stop="53306" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="574" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E205550" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55573" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTG</genome_strand>
        <mrna_strand>CTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGG..................................................................................TAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299972" ref_strand="+" ref_description="SGN-E299972 [cLEW-11-E12]">
      <seq>ccgtctgaaagcagctccaatctctcattctcaagatggctgtcggtaagaacaagaggatttcaaagggaaagaagggaggaaagaagaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcagatccgtcgcaagatggttgagatcatgagaaaccaagcaagttcctgtgacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55877" stop="53007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55577" g_stop="55532" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="200" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="338" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="524" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53359" g_stop="53307" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="577" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E299972" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55577" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTCTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCT</genome_strand>
        <mrna_strand>CCGTCTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGG..................................................................................TAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295311" ref_strand="+" ref_description="SGN-E295311 [cLET-20-F6]">
      <seq>aaagcagctccaatctctcattctcaagatggctgtcggtaagaacaagaggatttcaaagggaaagaagggaggaaagaagaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcagatccgtcgcaagatggttgagatcatgagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55870" stop="53028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55570" g_stop="55532" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="193" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="331" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="517" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53359" g_stop="53328" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="549" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E295311" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55570" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAGAAA</genome_strand>
        <mrna_strand>AAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGG..................................................................................TAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAGATGGTTGAGATCATGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310939" ref_strand="+" ref_description="SGN-E310939 [cLEZ-17-B10]">
      <seq>gctccaatctctcattctcaagatggctgtcggtaagaacaagaggatttcaaagggaaagaagggaggaaagaagaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcagagcagccagatccgtcagatccgtcgcaagatggttgagatcatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55864" stop="53031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55564" g_stop="55532" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="187" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="325" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53652" g_stop="53467" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="511" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53359" g_stop="53331" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="540" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E310939" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55564" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53467"/>
          <exon e_start="53359" e_stop="53331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCCAATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAGGTTGGTGGTATTTTATACTTGATTGCACTTATTTACTTATCTGAAAAATATCTACGTGGCAGGTATAGTTTTGATTACTTATCAGCATGTTTGTCTTATTGTGTTAGATCCGTCGCAAGATGGTTGAGATCATGAG</genome_strand>
        <mrna_strand>GCTCCAATCTCTCATTCTCAAGATGGCTGTCGG..................................................................................TAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG...........................................................................................................ATCCGTCGCAAGATGGTTGAGATCATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247304" ref_strand="+" ref_description="SGN-E247304 [cLEF-46-O24]">
      <seq>ccccaaccccccgtctgaaagcagctccaatctctcattctcaagatggctgtcggtaagaacaagaggatttcaaagggaaagaagggaggaaagaagaaggcggccgatccatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttatgctcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55887" stop="53185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55587" g_stop="55532" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="208" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="346" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53652" g_stop="53485" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="514" r_length="168" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E247304" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55587" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCAACCCCCCGTCTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAG</genome_strand>
        <mrna_strand>CCCCAACCCCCCGTCTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGG..................................................................................TAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCC--ATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267469" ref_strand="+" ref_description="SGN-E267469 [cLEI-8-L19]">
      <seq>tgaaagcagctccaatctctcattctcaagatggctgtcggtaagaacaagaggatttcaaagggaaagaagggaggaaagaagaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttatgatgttctgcattgcttttacaaagaagcgtccaaaccaacagaagcgtacatgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55872" stop="53191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55572" g_stop="55532" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="195" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="333" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53652" g_stop="53491" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="495" r_length="162" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E267469" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55572" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTAT</genome_strand>
        <mrna_strand>TGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGG..................................................................................TAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTATGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725517" ref_strand="+" ref_description="SGN-E725517 [LA03DE11]">
      <seq>gtctgaaagcagctccaatctctcattctcaagatggctgtcggtaagaacaagaggatttcaaagggaaagaagggaggaaagaagaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttacaaagaagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55875" stop="53219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55575" g_stop="55532" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="198" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="336" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53652" g_stop="53519" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="470" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E725517" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55575" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCG</genome_strand>
        <mrna_strand>GTCTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGG..................................................................................TAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313650" ref_strand="+" ref_description="SGN-E313650 [cTOA-12-J15]">
      <seq>taggcccaaccccccttctgaaagcaggtccaatctctcattctcgagatggctgtcggtaagaacaagaggatttcaaagggaaagaagggaggaaagaagaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcaaggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttaactgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgatagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacatacaagttgaggtctctggtgcgcaagtggcagactttgattgatgctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgcttttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55886" stop="53228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55590" g_stop="55532" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="213" r_length="154" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="351" r_length="138" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53652" g_stop="53528" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="476" r_length="125" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E313650" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55590" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCCCAACCCCCCGTCTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTAC</genome_strand>
        <mrna_strand>TAGGCCCAACCCCCCTTCTGAAAGCAGGTCCAATCTCTCATTCTCGAGATGGCTGTCGG..................................................................................TAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAAGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAACTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGATAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACATACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGATGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334907" ref_strand="+" ref_description="SGN-E334907 [cTOE-3-L4]">
      <seq>aatctctcattctcaagatggctgtcggtaagaacaagaggatttcaaagggaaagaagggaggaaagaagaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcagactttgattgaggctcatgtggatgtcaagactacagatagctacactcttaggatgttctgcattgctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55859" stop="53229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55559" g_stop="55532" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="182" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="320" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53652" g_stop="53529" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="444" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E334907" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55559" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTA</genome_strand>
        <mrna_strand>AATCTCTCATTCTCAAGATGGCTGTCGG..................................................................................TAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356102" ref_strand="+" ref_description="SGN-E356102 [cLHT-7-I9]">
      <seq>tgaaagcagctccaatctctcattctcaagatggctgtcggtaagaacaagaggatttcaaagggaaagaagggaggaaagaagaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaacccttgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatggaatggacttcacaacagacaagttgaggtctctggtgcgcaagtggcaaactttgattgaggctcatgtggatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55872" stop="53276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55572" g_stop="55532" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="195" r_length="154" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="333" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53652" g_stop="53576" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="410" r_length="77" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E356102" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55572" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGT</genome_strand>
        <mrna_strand>TGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGG..................................................................................TAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTTGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGAATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAAACTTTGATTGAGGCTCATGTGGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228210" ref_strand="+" ref_description="SGN-E228210 [cLED-2-I12]">
      <seq>agaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaacttccatgggatggacttcacaacagacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55708" stop="53329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55408" g_stop="55296" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="251" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53652" g_stop="53629" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="275" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E228210" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55408" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACTTCACAACAGACAAG</genome_strand>
        <mrna_strand>AGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT......................................................................................................................GGGATGGACTTCACAACAGACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334803" ref_strand="+" ref_description="SGN-E334803 [cTOE-3-L16]">
      <seq>agggaaagaagggaggaatgaagaaagcggcctatccatatgctgagaaggattggtctgacattaaagcgccatcactttttgaaatcaagaacgtaggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaaccacacagtttttgaagtcagtgcacctgatctttagaaagatgaggatcaggctctcaagaagatccgcttgagagcagaagatgtgcaagggaggaatgtcctcacaaactcccatgggatggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55729" stop="53470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55429" g_stop="55296" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53908" g_stop="53771" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="272" r_length="138" r_score="0.928"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118">
            <donor d_prob="0.889" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53652" g_stop="53643" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="282" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E334803" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>282</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55429" e_stop="55296"/>
          <exon e_start="53908" e_stop="53771"/>
          <exon e_start="53652" e_stop="53643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCATGTATGATGATTCTTTTACGCTATAATTTCTTCACAAGACTGGAGTATAGCTATTTTTATGGATGGAATTTGACTTTGTTTTGAGAAAAATAAATAACTTTATTGTTGGCTATCTTCAGGGGATGGACT</genome_strand>
        <mrna_strand>AGGGAAAGAAGGGAGGAATGAAGAAAGCGGCCTATCCATATGCTGAGAAGGATTGGTCTGACATTAAAGCGCCATCACTTTTTGAAATCAAGAACGTAGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAACCACACAGTTTTTGAAGTCAGTGCACCTGATCTTTAGAAAGATGAGGATCAGGCTCTCAAGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTCCCAT......................................................................................................................GGGATGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308315" ref_strand="+" ref_description="SGN-E308315 [cLEZ-6-K1]">
      <seq>tccaatctctcattctcaccatggctgtcggtaagaacaagaggatttcaaagggaaacaagggaggaaagaagaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagttttcgaaatcaagaacgttggcaaaaccctcttcactaggactcacggtactaagattggttccgaaggactgaagcacagagtttttgaagctcagtttagctgatcttcagaaggatgaggatcaggctttcaggaagatccgcttgagagcagaagatgtgcaacgggaggaatgttcctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55862" stop="53482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55562" g_stop="55532" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="185" r_length="154" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53782" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="315" r_length="130" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E308315" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55562" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAG-TCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAA-GGGAGGAATG-TCCTCA</genome_strand>
        <mrna_strand>TCCAATCTCTCATTCTCACCATGGCTGTCGG..................................................................................TAAGAACAAGAGGATTTCAAAGGGAAACAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTCGAAATCAAGAACGTTGGCAAAACCCTCTTCACTAGGACTCACGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGCTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAACGGGAGGAATGTTCCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201600" ref_strand="+" ref_description="SGN-E201600 [cLEC-11-A10]">
      <seq>gatttcaaagggaaagaagggaggaaagaagaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcaaggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagctgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55737" stop="53556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55437" g_stop="55296" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53908" g_stop="53856" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="195" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E201600" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>195</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55437" e_stop="55296"/>
          <exon e_start="53908" e_stop="53856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCT</genome_strand>
        <mrna_strand>GATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAAGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296009" ref_strand="+" ref_description="SGN-E296009 [cLET-27-M8]">
      <seq>ccgtctgaaagcagctccaatctctcattctcaagatggctgtcggtaagaacaagaggatttcaaagggaaagaagggaggaaagaagaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagtttttgaaatcaagaacgttggcaaaaccctcgtcactaggactcagggtactaagattgcttccgaaggactgaagcacagagtttttgaagtcagtttagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55877" stop="53562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55577" g_stop="55532" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55296" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="200" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55295" i_stop="53909" i_length="1387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53908" g_stop="53862" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="247" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E296009" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>247</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55577" e_stop="55532"/>
          <exon e_start="55449" e_stop="55296"/>
          <exon e_start="53908" e_stop="53862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTCTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAGGTCGAAATCTCTCTTCAGTTTCTACTTCTTTTTGCGCTTTTGTAATTATGTTTTTCTCTCTCTCTCTTTTTTTTTTCTTTGAATGTTTTCGATTAGTATATAAATTTTCACATAATTGCTTTTTGATTCCAACAATTGTCAATCCAGATTAATTATCTAATACAATTACCCGGACTATTCTTTAGGGGTATGATATGGTTGTAATTTAAGATATGCAAATCTCAACACATATCTACACATTGAACAGTAAAGTGTTTGGTTGGGGAAGTAGATTATACAGGTTTTGAAATTTGATGACGGAACTCTGTTGCTAACATTTTGGATAAAGTTAAGATTGTTGTACTTCCAAAATATAGGAGTGGTAGGTTGGTTATTAGTGCAAAGTTTTTTTTTTCTATTAGGTGATTATCAGTTTGAAGGTAGTCCAGTTTATGATGAGTCCTCACAATATTGAATGCCTTTGAATCTAGTTAAAATGTTGCTTAAGGCATAGTTTTTCCCTGAAGTTTAGCGCAGGAGATGATAGGTAGATTTACTTAAGTGATGTCTTCTTGCTTATATTACGTTTCATGCCTTTGAGCTAATGGGCTATTTCAGAAAGAGAGGCACACCAAACAAGTTGCAGTTGAGAAACCAGTACATCGATTGTTAAGATAGCATTACGAATGAATGCAAAAAGATAGTGTAACAGTACTAGTCACTAAACACAGATAGAAACTTGAAAATGCATTGTTTCAACTGATTGAACTTTTTAATGCATCAACATGATTGCAAGGTTAGCATTATACTCATTTTTCTATATCTAAAATGCCATTCAAACTTTACTAGCCTCTTCTATACACTAATGGCAAGGATAAGCTAAGGGTAAATTAATGGAAAGAAAAAGAGTACAGTGCTAACCTACTATAGTTGGGTAACATGTTAGGAAAATACTATGCGTGTAGGTATAGAGTGATTAGAGTCAAAGGCAGATACTTGGGATTCACATACCAGACCTACTAGTTTGAAATTGAAGTATGGTAATAATTATTTTTGTGCTATAGAACATATGTGTAGGATGTTAGTTTTCTTCTTTCAACTTTGATTGGTTAGTTCAGCAAACTGTTTTGTCAACTTTTTCATTTTGTTTGTAGTTTAGATCTGTTTGTACGGCTTTTAACTGCTGACCATACTCTTCAAAAATATATTTATCTTTGCCTATTATGGTCTATTCATTTTATTTTGAGGTCGAATATATCTCTAAGACCCATCAGCCCCCCCCCCCCTCCTCCTCCTCTCCTCCCTCCTTTTTATACTAAGGTGGAAGCTTCTACTCTTAAATATTGAGTTATATGACTGCAAATCCAGTTTTACTTAAACAAATGCATTTGTCCCATTGTGGCTCCAGATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGC</genome_strand>
        <mrna_strand>CCGTCTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGG..................................................................................TAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278125" ref_strand="+" ref_description="SGN-E278125 [cLER-4-J17]">
      <seq>aacccccaaccccccgtctgaaagcagctccaatctctcattctcaagatggctgtcggtaagaacaagaggatttcaaagggaaagaagggaggaaagaagaaggcggccgatccatatgctaagaaggattggtatgacattaaggcaccatcagattttggaatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55890" stop="55039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55590" g_stop="55532" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55449" g_stop="55339" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="170" r_length="111" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E278125" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>170</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55590" e_stop="55532"/>
          <exon e_start="55449" e_stop="55339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCCCAACCCCCCGTCTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGGGTATCTCTCGTCTTCAACTCCGATTTGAAACTTTTACTTTTTCTGTATCTTTTGATTCTAATGTTGTTACTTTGTTGTACAGTAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAA</genome_strand>
        <mrna_strand>AACCCCCAACCCCCCGTCTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGG..................................................................................TAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGATTTTGGAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392727" ref_strand="+" ref_description="SGN-E392727 [TUS-37-J5]">
      <seq>taatatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtcacgctttatacaaaatttaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="-" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56521" stop="55769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56221" g_stop="56069" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="-" ref_id="SGN-E392727" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>153</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56221" e_stop="56069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAATGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATATAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCATTGCAATTATATAATTCGCAATT</genome_strand>
        <mrna_strand>TAATATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCACGCTTTATACAAAATTTAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223955" ref_strand="+" ref_description="SGN-E223955 [cLEL-19-L6](-)">
      <seq>agccttgttgaacagtttttaccattcgtgaagcagttctaaacttctagtaatggcaatagtgattgttcaataacaacatacccagtgcaattctacaagtggggtctggaaagggtagagcgtgtacaaaaccttacccctaccttagaagatagagagattgtttctcatagacccttggctcaagaagaagcatatcaaagcagttcgggaatagtgattattgtgtatggtaaatacactagaacatcagaaatattcaaacaaaaccaccagctagcagaacgcagtttactggataaaggaacagtgaaaaaaagaaattaagagcctagaatttgggtccgaaatgatgaggaaaacttgtatacttactaaagtttcgtgttataggtttctcttttgtcgctaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66717" stop="67735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67017" g_stop="67431" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="417" polyA_stop="440"/>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E223955" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67017" e_stop="67431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTTGTTGAACAGTTTTTACCATTCGTGAAGCAGTTCTAAACTTCTAGTAATGGCAATAGTGATTGTTCAATAACAACATACCCAGTGCAATTCTACAAGTGGGGTCTGGAGAGGGTAGAGCGTGTAC-AAACCTTACCCCTACCTTAGAAGATAGAGAGATTGTTTCTCATAGACCCTTGGCTCAAGAAGAAGCATATCAAAGCAGTTCGGGAATAGTGATTATTGTGTATGGTAAATACACTAGAACATCAGAAATATTCAAACAAAACCACCAGCTAGCAGAACGCAGTTTACTGGATAAAGGAACAGTGAAAAAAAGAAATTAAGAGCCTAGAATTTGGGTCCGAAATGATGAGGAAAACTTGTATACTTACTAAAGTTTCGTGTTATAGGTTTCTCTTTTGTCGCTACA</genome_strand>
        <mrna_strand>AGCCTTGTTGAACAGTTTTTACCATTCGTGAAGCAGTTCTAAACTTCTAGTAATGGCAATAGTGATTGTTCAATAACAACATACCCAGTGCAATTCTACAAGTGGGGTCTGGAAAGGGTAGAGCGTGTACAAAACCTTACCCCTACCTTAGAAGATAGAGAGATTGTTTCTCATAGACCCTTGGCTCAAGAAGAAGCATATCAAAGCAGTTCGGGAATAGTGATTATTGTGTATGGTAAATACACTAGAACATCAGAAATATTCAAACAAAACCACCAGCTAGCAGAACGCAGTTTACTGGATAAAGGAACAGTGAAAAAAAGAAATTAAGAGCCTAGAATTTGGGTCCGAAATGATGAGGAAAACTTGTATACTTACTAAAGTTTCGTGTTATAGGTTTCTCTTTTGTCGCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224329" ref_strand="+" ref_description="SGN-E224329 [cLEL-19-L6](-)">
      <seq>aagattgtttctcatagacccttggctcaagaagaagcatatcaaagcagttcgggaatagtgattattgtgtatggtaaatacgctagaacatcagaaatattcaaacagaaccaccagctagcagaacgcagtttactggataaaggaacagtgaaaaaaagaaattaagagcctagaatttgggtccgaaatgatgaggaaaccttgtatccttactaaagtttcgtgttataggtttctcttttgtcgctaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66876" stop="67735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67175" g_stop="67431" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="258" polyA_stop="279"/>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E224329" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>257</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67175" e_stop="67431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTGTTTCTCATAGACCCTTGGCTCAAGAAGAAGCATATCAAAGCAGTTCGGGAATAGTGATTATTGTGTATGGTAAATACACTAGAACATCAGAAATATTCAAACAAAACCACCAGCTAGCAGAACGCAGTTTACTGGATAAAGGAACAGTGAAAAAAAGAAATTAAGAGCCTAGAATTTGGGTCCGAAATGATGAGGAAAACTTGTATACTTACTAAAGTTTCGTGTTATAGGTTTCTCTTTTGTCGCTACA</genome_strand>
        <mrna_strand>AAGATTGTTTCTCATAGACCCTTGGCTCAAGAAGAAGCATATCAAAGCAGTTCGGGAATAGTGATTATTGTGTATGGTAAATACGCTAGAACATCAGAAATATTCAAACAGAACCACCAGCTAGCAGAACGCAGTTTACTGGATAAAGGAACAGTGAAAAAAAGAAATTAAGAGCCTAGAATTTGGGTCCGAAATGATGAGGAAACCTTGTATCCTTACTAAAGTTTCGTGTTATAGGTTTCTCTTTTGTCGCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200296" ref_strand="+" ref_description="SGN-E200296 [cLEC-12-J8]">
      <seq>ttttcatgtgcccattaagatgtctggtttttttgaggaaccaaacaataatataacaagtagtagtacactaccaaattgtgtttctcaattttatttgcaagagctttctgtcaatatgagtaataatgttcatgaaattagccataatgaaccttctcatgtgacaaacaaaaccaattcttcctccctctgctctactcaatctaagaatgtaagagacggtgatgatgggaaagggcaaaagaaaagaaatggtaatgtaaaaagagagaaaaaaacaaaggaaaataagaagaaagcccctgaagaggcccctacaggatatgttcatgttagagcaaggaggggccaggcaactgacagtcacagtcttgctgaaagggtgaggagagagaaaataagtgaaaggatgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0222J18-tfzVU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0222J18.1" temp_strand="+" temp_description="C06HBa0222J18.1  AC216653.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0222J18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70711" stop="72652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71011" g_stop="71221" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71222" i_stop="71511" i_length="290">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71512" g_stop="71685" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="385" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71686" i_stop="72319" i_length="634">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72320" g_stop="72352" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="418" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0222J18.1" gen_strand="+" ref_id="SGN-E200296" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0222J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71011" e_stop="71221"/>
          <exon e_start="71512" e_stop="71685"/>
          <exon e_start="72320" e_stop="72352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCATGTGCCCATTAAGATGTCTGGTTTTTTTGAGGAACCAAACAATAATATAACAAGTAGTAGTACACTACCAAATTGTGTTTCTCAATTTTATTTGCAAGAGCTTTCTGTCAATATGAGTAATAATGTTCATGAAATTAGCCATAATGAACCTTCTCATGTGACAAACAAAACCAATTCTTCCTCCCTCTGCTCTACTCAATCTAAGGTAATTCTTTTTAAATATTATTTTGTTTTGTAAAGGTCACAAATCTTAAATTTTAACTTTTCACGTGATATGTGTAATAATGTAAGACCAAAGATATATTTTTGTGCATTTTTAATTCGACACCATAACATTTAAAAGTATTATTTACTGTTCTTTTAACTTTGTTTCAACTTTCAAGTAAAAAATAAGACAAATAAATACAAACAGAGGGAGCATATGAAGTTCAAAGTTTTATAGATTGAATTTTTTGTTTTTTGATGAAGTGGTAATTATTATTTATGATTTGTTAGAATGTAAGAGACGGTGATGATGGGAAAGGGCAAAAGAAAAGAAATGGTAATGTAAAAAGAGAGAAAAAAACAAAGGAAAATAAGAAGAAAGCCCCTGAAGAGGCCCCTACAGGATATGTTCATGTTAGAGCAAGGAGGGGCCAGGCAACTGACAGTCACAGTCTTGCTGAAAGGGTAACTAATTTTCTACTATACAATTAATCTTCTTATTTTTTTATCTTTGTATGAGTGTCCGATATCAGCATTGAAGTTATAACATTTTTAAAATAAAATTTGTATCCCAAGTTCAAACCTGACACCTCTAGCAAAGAGAGAAGCAGTTTAATTCATTGCGCCACATTTTTTTTAGAGTCTCCACTATGTTATACACATTGTCTGTGTAACCTATTCATAAATTATATTCCATCCGTTTCACAAAGAATGAACTGGTTTAATTTGGTACGGAATTTAAGAGTTTAAGAGAAATTTTTGAATTTCGTGGTCCTAAAATAAAGTTAGGTCCAATGTACAAAATTGTTCTTTGATCTTGTAGCCTTAAACATGTCATGTGGAAAGCTGAAATTAAGATTTTACTGAAAAAAGAAAACAATAATTTTTTTTAAACAGACTAAAAAGAAAAAGAAATTATTCTTTTAAAACGGAGGAAGTATTATAGTAGTAGATTAATGTCATATTACAATATAGTTTTTACCCAAATAGTGTATATAACTAAGTTTATTGCAAATCATGTCTACCTCTAGTTATCTTTCCATATTAGTATTCTGGATTTTAAAATTATTAGTTGAAAATTTTTATGACATAATTTCAGGTGAGGAGAGAGAAAATAAGTGAAAGGATGAAG</genome_strand>
        <mrna_strand>TTTTCATGTGCCCATTAAGATGTCTGGTTTTTTTGAGGAACCAAACAATAATATAACAAGTAGTAGTACACTACCAAATTGTGTTTCTCAATTTTATTTGCAAGAGCTTTCTGTCAATATGAGTAATAATGTTCATGAAATTAGCCATAATGAACCTTCTCATGTGACAAACAAAACCAATTCTTCCTCCCTCTGCTCTACTCAATCTAAG..................................................................................................................................................................................................................................................................................................AATGTAAGAGACGGTGATGATGGGAAAGGGCAAAAGAAAAGAAATGGTAATGTAAAAAGAGAGAAAAAAACAAAGGAAAATAAGAAGAAAGCCCCTGAAGAGGCCCCTACAGGATATGTTCATGTTAGAGCAAGGAGGGGCCAGGCAACTGACAGTCACAGTCTTGCTGAAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGAGAGAGAAAATAAGTGAAAGGATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>236</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1420" PGL_stop="3398"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1437" e_stop="1769"/>
            <exon e_start="2613" e_stop="3020"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.923" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1437" e_stop="1769" e_length="333"/>
          </exon>
          <intron i_serial="1" don_prob="0.923" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1770" i_stop="2612" i_length="843"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2613" e_stop="3020" e_length="408"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1437" stop="1769"/>
              <exon start="2613" stop="2846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1439" stop="1769"/>
              <exon start="2613" stop="2956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1439" stop="1769"/>
              <exon start="2613" stop="2950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1442" stop="1749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1442" stop="1664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1444" stop="1769"/>
              <exon start="2613" stop="2956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1446" stop="1769"/>
              <exon start="2613" stop="2953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1446" stop="1769"/>
              <exon start="2613" stop="2936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1446" stop="1769"/>
              <exon start="2613" stop="2848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1447" stop="1769"/>
              <exon start="2613" stop="2946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1448" stop="1769"/>
              <exon start="2613" stop="2982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1448" stop="1769"/>
              <exon start="2613" stop="2924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1449" stop="1769"/>
              <exon start="2613" stop="3019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1450" stop="1769"/>
              <exon start="2613" stop="3016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1450" stop="1769"/>
              <exon start="2613" stop="2870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1450" stop="1769"/>
              <exon start="2613" stop="2864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1450" stop="1769"/>
              <exon start="2613" stop="2742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1451" stop="1769"/>
              <exon start="2613" stop="2943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1451" stop="1769"/>
              <exon start="2613" stop="2882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1452" stop="1769"/>
              <exon start="2613" stop="2845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1457" stop="1769"/>
              <exon start="2613" stop="2846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1458" stop="1769"/>
              <exon start="2613" stop="2870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1583" stop="1769"/>
              <exon start="2613" stop="3020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1631" stop="1769"/>
              <exon start="2613" stop="2943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203171" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAGAAGAGAAAGGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGG : ATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATAGTTTATAACTGCTCCTGAATTTTTGTATTGAATCAACTTAATTTGCAAGTGACCATTCTTAACTATGTTCCCAGTCATTGAGGATTGTGTCAATTTTCTTCTTGTCAAAATTGTACCTAAATGGTGAAATCTGTTTCGCTTTCTGCCAAG</gDNA_template>
            <first_frame> R  R  R  E  R  M  M  S  L  S  I  A  S  P  S  G  V  T  F  T  S  K  M  N  L  S  K  S  S  F  H  G  I  Q  I  P  K  I  M  Q  A  R  A  V  N  A  P  P  H  S  C  S  S  L  V  V  K  M  A  K  R  E  E  E  L  K  E  I  R  T  K  T  T  E  E  L  Q  E  E  I  V  D  L  K  G  E  L  F  M  L  R  L  Q  R  S  A  R  N  E  F  K  S  S  E  F  L  R  M  R  K  R  :  I  A  R  M  L  T  V  K  R  E  R  E  V  E  E  G  I  N  K  R  I  S  R  K  L  D  R  K  W  K  K  S  I  V  P  R  P  P  P  S  L  K  K  L  R  E  E  E  A  A  E  E  A  K  E  S  A  S  *  L  Q  T  I  K  L  A  G  K  C  C  I  S  F  L  A  S  P  L  I  C  F  F  L  I  R  I  V  Y  N  C  S  *  I  F  V  L  N  Q  L  N  L  Q  V  T  I  L  N  Y  V  P  S  H  *  G  L  C  Q  F  S  S  C  Q  N  C  T  *  M  V  K  S  V  S  L  S  A  K </first_frame>
            <second_frame>  E  E  E  K  G  *  *  V  S  P  L  P  H  L  Q  V  L  P  S  L  P  R  *  T  S  L  N  P  P  S  M  A  F  R  F  L  K  S  C  R  R  V  Q  *  T  R  R  L  T  L  V  R  L  W  W  *  K  W  R  R  G  K  R  N  *  R  K  S  E  L  R  L  L  K  S  F  R  K  R  L  W  T  L  K  V  S  Y  L  C  F  V  F  K  G  Q  L  E  M  S  S  S  P  A  S  F  C  E  C  A  K  G :   L  Q  G  C  L  Q  L  N  G  R  E  R  L  K  K  G  L  T  R  G  Y  P  G  S  S  T  G  N  G  R  K  A  L  S  L  D  H  H  P  L  *  R  S  Y  E  R  R  R  Q  Q  K  K  L  R  N  L  P  P  D  Y  R  Q  L  N  *  Q  A  N  V  V  F  L  F  W  P  L  L  S  F  V  S  S  S  Y  V  *  F  I  T  A  P  E  F  L  Y  *  I  N  L  I  C  K  *  P  F  L  T  M  F  P  V  I  E  D  C  V  N  F  L  L  V  K  I  V  P  K  W  *  N  L  F  R  F  L  P   </second_frame>
            <third_frame>   K  K  R  K  D  D  E  S  L  H  C  L  T  F  R  C  Y  L  H  F  Q  D  E  P  L  *  I  L  L  P  W  H  S  D  S  *  N  H  A  G  A  C  S  K  R  A  A  S  L  L  F  V  F  G  G  E  N  G  E  E  G  R  G  I  E  G  N  Q  N  *  D  Y  *  R  A  S  G  R  D  C  G  P  *  R  *  A  I  Y  A  S  S  S  K  V  S  S  K  *  V  Q  V  Q  R  V  S  A  N  A  Q  K   : D  C  K  D  A  Y  S  *  T  G  E  R  G  *  R  R  D  *  Q  E  D  I  Q  E  A  R  P  E  M  E  E  K  H  C  P  *  T  T  T  L  F  E  E  A  T  R  G  G  G  S  R  R  S  *  G  I  C  L  L  I  T  D  N  *  T  S  R  Q  M  L  Y  F  F  S  G  L  S  S  H  L  F  L  P  H  T  Y  S  L  *  L  L  L  N  F  C  I  E  S  T  *  F  A  S  D  H  S  *  L  C  S  Q  S  L  R  I  V  S  I  F  F  L  S  K  L  Y  L  N  G  E  I  C  F  A  F  C  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1437" stop="1769"/>
                    <exon start="2613" stop="2789"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRRERMMSLSIASPSGVTFTSKMNLSKSSFHGIQIPKIMQARAVNAPPHSCSSLVVKMAKREEELKEIRTKTTEELQEEIVDLKGELFMLRLQRSARNEFKSSEFLRMRKRIARMLTVKREREVEEGINKRISRKLDRKWKKSIVPRPPPSLKKLREEEAAEEAKESAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="1420" e_stop="1769"/>
            <exon e_start="2613" e_stop="2934"/>
            <exon e_start="3236" e_stop="3279"/>
            <exon e_start="3371" e_stop="3398"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.923" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-intron don_prob="0.000" acc_prob="0.294" e_score="0.523"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1420" e_stop="1769" e_length="350"/>
          </exon>
          <intron i_serial="1" don_prob="0.923" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1770" i_stop="2612" i_length="843"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="2613" e_stop="2934" e_length="322"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="2935" i_stop="3235" i_length="301"/>
          </intron>
          <exon e_serial="3" e_score="0.523">
            <gDNA_exon_boundary e_start="3236" e_stop="3279" e_length="44"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.294">
            <gDNA_intron_boundary i_start="3280" i_stop="3370" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="0.571">
            <gDNA_exon_boundary e_start="3371" e_stop="3398" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1420" stop="1769"/>
              <exon start="2613" stop="2934"/>
              <exon start="3236" stop="3279"/>
              <exon start="3371" stop="3398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1437" stop="1769"/>
              <exon start="2613" stop="2846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1442" stop="1749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1442" stop="1664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1446" stop="1769"/>
              <exon start="2613" stop="2848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1448" stop="1769"/>
              <exon start="2613" stop="2924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1450" stop="1769"/>
              <exon start="2613" stop="2870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1450" stop="1769"/>
              <exon start="2613" stop="2864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1450" stop="1769"/>
              <exon start="2613" stop="2742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1451" stop="1769"/>
              <exon start="2613" stop="2882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1452" stop="1769"/>
              <exon start="2613" stop="2845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1457" stop="1769"/>
              <exon start="2613" stop="2846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1458" stop="1769"/>
              <exon start="2613" stop="2870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293605" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCTTATCTGTAGCAGCAGAAGAAGAGAAAGGATGATGAGTCTCTCCATTGCCTCACCTTCAGGTGTTACCTTCACTTCCAAGATGAACCTCTCTAAATCCTCCTTCCATGGCATTCAGATTCCTAAAATCATGCAGGCGCGTGCAGTAAACGCGCCGCCTCACTCTTGTTCGTCTTTGGTGGTGAAAATGGCGAAGAGGGAAGAGGAATTGAAGGAAATCAGAACTAAGACTACTGAAGAGCTTCAGGAAGAGATTGTGGACCTTAAAGGTGAGCTATTTATGCTTCGTCTTCAAAGGTCAGCTCGAAATGAGTTCAAGTCCAGCGAGTTTCTGCGAATGCGCAAAAGG : ATTGCAAGGATGCTTACAGTTAAACGGGAGAGAGAGGTTGAAGAAGGGATTAACAAGAGGATATCCAGGAAGCTCGACCGGAAATGGAAGAAAAGCATTGTCCCTAGACCACCACCCTCTTTGAAGAAGCTACGAGAGGAGGAGGCAGCAGAAGAAGCTAAGGAATCTGCCTCCTGATTACAGACAATTAAACTAGCAGGCAAATGTTGTATTTCTTTTCTGGCCTCTCCTCTCATTTGTTTCTTCCTCATACGTATAGTTTATAACTGCTCCTGAATTTTTGTATTGAATCAACTTAATTTGCAAGTGACCATTCTTAACT : CAAGACACAAAAGCATATATCTACTTTTCAACCAAAACAACCCC : TATTGCGTGTCTGACGAGTCACCAAAAA</gDNA_template>
            <first_frame> P  L  S  V  A  A  E  E  E  K  G  *  *  V  S  P  L  P  H  L  Q  V  L  P  S  L  P  R  *  T  S  L  N  P  P  S  M  A  F  R  F  L  K  S  C  R  R  V  Q  *  T  R  R  L  T  L  V  R  L  W  W  *  K  W  R  R  G  K  R  N  *  R  K  S  E  L  R  L  L  K  S  F  R  K  R  L  W  T  L  K  V  S  Y  L  C  F  V  F  K  G  Q  L  E  M  S  S  S  P  A  S  F  C  E  C  A  K  G :   L  Q  G  C  L  Q  L  N  G  R  E  R  L  K  K  G  L  T  R  G  Y  P  G  S  S  T  G  N  G  R  K  A  L  S  L  D  H  H  P  L  *  R  S  Y  E  R  R  R  Q  Q  K  K  L  R  N  L  P  P  D  Y  R  Q  L  N  *  Q  A  N  V  V  F  L  F  W  P  L  L  S  F  V  S  S  S  Y  V  *  F  I  T  A  P  E  F  L  Y  *  I  N  L  I  C  K  *  P  F  L  T  :  Q  D  T  K  A  Y  I  Y  F  S  T  K  T  T  P :   I  A  C  L  T  S  H  Q  K </first_frame>
            <second_frame>  P  Y  L  *  Q  Q  K  K  R  K  D  D  E  S  L  H  C  L  T  F  R  C  Y  L  H  F  Q  D  E  P  L  *  I  L  L  P  W  H  S  D  S  *  N  H  A  G  A  C  S  K  R  A  A  S  L  L  F  V  F  G  G  E  N  G  E  E  G  R  G  I  E  G  N  Q  N  *  D  Y  *  R  A  S  G  R  D  C  G  P  *  R  *  A  I  Y  A  S  S  S  K  V  S  S  K  *  V  Q  V  Q  R  V  S  A  N  A  Q  K   : D  C  K  D  A  Y  S  *  T  G  E  R  G  *  R  R  D  *  Q  E  D  I  Q  E  A  R  P  E  M  E  E  K  H  C  P  *  T  T  T  L  F  E  E  A  T  R  G  G  G  S  R  R  S  *  G  I  C  L  L  I  T  D  N  *  T  S  R  Q  M  L  Y  F  F  S  G  L  S  S  H  L  F  L  P  H  T  Y  S  L  *  L  L  L  N  F  C  I  E  S  T  *  F  A  S  D  H  S  *  L :   K  T  Q  K  H  I  S  T  F  Q  P  K  Q  P   : L  L  R  V  *  R  V  T  K   </second_frame>
            <third_frame>   L  I  C  S  S  R  R  R  E  R  M  M  S  L  S  I  A  S  P  S  G  V  T  F  T  S  K  M  N  L  S  K  S  S  F  H  G  I  Q  I  P  K  I  M  Q  A  R  A  V  N  A  P  P  H  S  C  S  S  L  V  V  K  M  A  K  R  E  E  E  L  K  E  I  R  T  K  T  T  E  E  L  Q  E  E  I  V  D  L  K  G  E  L  F  M  L  R  L  Q  R  S  A  R  N  E  F  K  S  S  E  F  L  R  M  R  K  R  :  I  A  R  M  L  T  V  K  R  E  R  E  V  E  E  G  I  N  K  R  I  S  R  K  L  D  R  K  W  K  K  S  I  V  P  R  P  P  P  S  L  K  K  L  R  E  E  E  A  A  E  E  A  K  E  S  A  S  *  L  Q  T  I  K  L  A  G  K  C  C  I  S  F  L  A  S  P  L  I  C  F  F  L  I  R  I  V  Y  N  C  S  *  I  F  V  L  N  Q  L  N  L  Q  V  T  I  L  N   : S  R  H  K  S  I  Y  L  L  F  N  Q  N  N  P  :  Y  C  V  S  D  E  S  P  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1422" stop="1769"/>
                    <exon start="2613" stop="2789"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LICSSRRRERMMSLSIASPSGVTFTSKMNLSKSSFHGIQIPKIMQARAVNAPPHSCSSLVVKMAKREEELKEIRTKTTEELQEEIVDLKGELFMLRLQRSARNEFKSSEFLRMRKRIARMLTVKREREVEEGINKRISRKLDRKWKKSIVPRPPPSLKKLREEEAAEEAKESAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="1769" PGL_stop="1440"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1769" e_stop="1440"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="1769" e_stop="1440" e_length="330"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1769" stop="1440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1753" stop="1446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277276" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTTTTGCGCATTCGCAGAAACTCGCTGGACTTGAACTCATTTCGAGCTGACCTTTGAAGACGAAGCATAAATAGCTCACCTTTAAGGTCCACAATCTCTTCCTGAAGCTCTTCAGTAGTCTTAGTTCTGATTTCCTTCAATTCCTCTTCCCTCTTCGCCATTTTCACCACCAAAGACGAACAAGAGTGAGGCGGCGCGTTTACTGCACGCGCCTGCATGATTTTAGGAATCTGAATGCCATGGAAGGAGGATTTAGAGAGGTTCATCTTGGAAGTGAAGGTAACACCTGAAGGTGAGGCAATGGAGAGACTCATCATCCTTTCTCTTCT</gDNA_template>
            <first_frame> P  F  A  H  S  Q  K  L  A  G  L  E  L  I  S  S  *  P  L  K  T  K  H  K  *  L  T  F  K  V  H  N  L  F  L  K  L  F  S  S  L  S  S  D  F  L  Q  F  L  F  P  L  R  H  F  H  H  Q  R  R  T  R  V  R  R  R  V  Y  C  T  R  L  H  D  F  R  N  L  N  A  M  E  G  G  F  R  E  V  H  L  G  S  E  G  N  T  *  R  *  G  N  G  E  T  H  H  P  F  S  S </first_frame>
            <second_frame>  L  L  R  I  R  R  N  S  L  D  L  N  S  F  R  A  D  L  *  R  R  S  I  N  S  S  P  L  R  S  T  I  S  S  *  S  S  S  V  V  L  V  L  I  S  F  N  S  S  S  L  F  A  I  F  T  T  K  D  E  Q  E  *  G  G  A  F  T  A  R  A  C  M  I  L  G  I  *  M  P  W  K  E  D  L  E  R  F  I  L  E  V  K  V  T  P  E  G  E  A  M  E  R  L  I  I  L  S  L   </second_frame>
            <third_frame>   F  C  A  F  A  E  T  R  W  T  *  T  H  F  E  L  T  F  E  D  E  A  *  I  A  H  L  *  G  P  Q  S  L  P  E  A  L  Q  *  S  *  F  *  F  P  S  I  P  L  P  S  S  P  F  S  P  P  K  T  N  K  S  E  A  A  R  L  L  H  A  P  A  *  F  *  E  S  E  C  H  G  R  R  I  *  R  G  S  S  W  K  *  R  *  H  L  K  V  R  Q  W  R  D  S  S  S  F  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1694" stop="1479"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTFKVHNLFLKLFSSLSSDFLQFLFPLRHFHHQRRTRVRRRVYCTRLHDFRNLNAMEGGFREVHLGSEGNT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="3760" PGL_stop="3082"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3760" e_stop="3082"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="3760" e_stop="3082" e_length="679"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3760" stop="3082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548223" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCGAGGCCGAACCAGCTGTTTCATAGTGCTAGTACAAGTGCAGTTCCGCAGCAACAGTTCCTGCAACCTCCTAAAATTCAAGGACAAGCGAGGCCAAACCAGTTGTTTCATAGTGCCAGTACAAGTGCAGTTCCGCAGCAACAGTTCCTGCAACCTACTATGATTCAAGGACAAGTGAGGCCAAACCAGTATATGCAGACTCCAGGGTCAAACAGTGGTTTGGGGAATAATTTGATGAATGCTGCTATACAAGGACTTGTAGAAGGTGCAGCTCAGCAGGTTGGTCAGACTTTCATGCAGGGGATCATAGGTGGTGGTGACAACAATGGTGGAAATGAAGGATCATCAATCCTGGGAGGCATTTTTGGTGACTCGTCAGACACGCAATACTAGATTAATATTTTCACTTTACTTGTCTGAGTATAACAGGTCATATTCGGGGTTAAACATAAAAGTCCGCAACGGATCACACTCTTTGATGGGGTTGTTTTGGTTGAAAAGTAGATATATGCTTTTGTGTCTTGGTGTTTGGGTTATATGCTATAATCACCTTGTCAAAACCGGAGCCTTTGGCTTAAACTATGCAATATAGCACAAGTAATAAGTCTTTTTAAGACTGGTTAAATGTTATTGATTTTAGTATATTTAAGATTTCTTATTCATTATTCAGAATGACAT</gDNA_template>
            <first_frame> S  E  A  E  P  A  V  S  *  C  *  Y  K  C  S  S  A  A  T  V  P  A  T  S  *  N  S  R  T  S  E  A  K  P  V  V  S  *  C  Q  Y  K  C  S  S  A  A  T  V  P  A  T  Y  Y  D  S  R  T  S  E  A  K  P  V  Y  A  D  S  R  V  K  Q  W  F  G  E  *  F  D  E  C  C  Y  T  R  T  C  R  R  C  S  S  A  G  W  S  D  F  H  A  G  D  H  R  W  W  *  Q  Q  W  W  K  *  R  I  I  N  P  G  R  H  F  W  *  L  V  R  H  A  I  L  D  *  Y  F  H  F  T  C  L  S  I  T  G  H  I  R  G  *  T  *  K  S  A  T  D  H  T  L  *  W  G  C  F  G  *  K  V  D  I  C  F  C  V  L  V  F  G  L  Y  A  I  I  T  L  S  K  P  E  P  L  A  *  T  M  Q  Y  S  T  S  N  K  S  F  *  D  W  L  N  V  I  D  F  S  I  F  K  I  S  Y  S  L  F  R  M  T  </first_frame>
            <second_frame>  A  R  P  N  Q  L  F  H  S  A  S  T  S  A  V  P  Q  Q  Q  F  L  Q  P  P  K  I  Q  G  Q  A  R  P  N  Q  L  F  H  S  A  S  T  S  A  V  P  Q  Q  Q  F  L  Q  P  T  M  I  Q  G  Q  V  R  P  N  Q  Y  M  Q  T  P  G  S  N  S  G  L  G  N  N  L  M  N  A  A  I  Q  G  L  V  E  G  A  A  Q  Q  V  G  Q  T  F  M  Q  G  I  I  G  G  G  D  N  N  G  G  N  E  G  S  S  I  L  G  G  I  F  G  D  S  S  D  T  Q  Y  *  I  N  I  F  T  L  L  V  *  V  *  Q  V  I  F  G  V  K  H  K  S  P  Q  R  I  T  L  F  D  G  V  V  L  V  E  K  *  I  Y  A  F  V  S  W  C  L  G  Y  M  L  *  S  P  C  Q  N  R  S  L  W  L  K  L  C  N  I  A  Q  V  I  S  L  F  K  T  G  *  M  L  L  I  L  V  Y  L  R  F  L  I  H  Y  S  E  *  H </second_frame>
            <third_frame>   R  G  R  T  S  C  F  I  V  L  V  Q  V  Q  F  R  S  N  S  S  C  N  L  L  K  F  K  D  K  R  G  Q  T  S  C  F  I  V  P  V  Q  V  Q  F  R  S  N  S  S  C  N  L  L  *  F  K  D  K  *  G  Q  T  S  I  C  R  L  Q  G  Q  T  V  V  W  G  I  I  *  *  M  L  L  Y  K  D  L  *  K  V  Q  L  S  R  L  V  R  L  S  C  R  G  S  *  V  V  V  T  T  M  V  E  M  K  D  H  Q  S  W  E  A  F  L  V  T  R  Q  T  R  N  T  R  L  I  F  S  L  Y  L  S  E  Y  N  R  S  Y  S  G  L  N  I  K  V  R  N  G  S  H  S  L  M  G  L  F  W  L  K  S  R  Y  M  L  L  C  L  G  V  W  V  I  C  Y  N  H  L  V  K  T  G  A  F  G  L  N  Y  A  I  *  H  K  *  *  V  F  L  R  L  V  K  C  Y  *  F  *  Y  I  *  D  F  L  F  I  I  Q  N  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3759" stop="3367"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ARPNQLFHSASTSAVPQQQFLQPPKIQGQARPNQLFHSASTSAVPQQQFLQPTMIQGQVRPNQYMQTPGSNSGLGNNLMNAAIQGLVEGAAQQVGQTFMQGIIGGGDNNGGNEGSSILGGIFGDSSDTQY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="4503" PGL_stop="3784"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4503" e_stop="3784"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="4503" e_stop="3784" e_length="720"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4503" stop="3784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4502" stop="4069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282481" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGAAGAGAAAAGAGGCAAGAAGATGGGAAGGGTGAAATTGAACAATGATCAAACATCAAGCCTAAAGCACTTTAGTCATCCACATGAATTGGAGTTATGCACCCAACTCCAAGATCTAAGCCCTTGTTCAGGATGCAGACTTCCACCATCAGGCCAAATGTACATATGCAGGCCTTGCAACTTCACTCTTCATTTAAGCTGTGCTAAATTCCCACAGCTGATTACTCACCCCTCTCATCCGAACCACTCTCTCAACCTCCTCCCAACGTCCAAATACCCCGGTGGCCAATTCAACTGTGATGCCTGTAAACGCCATGGAACCGGCTTCAGCTACCATTGCAGTTATTGTGAGTTTGATCTCCATGTGATTTGTGCATCTAAACCCCTCAAAATCACACACGAACTGCACCAATGCTCGCTTGAACTCACCTTCAAGAATCCTTATGCTAATGCCAAAGGCTTCTCTTGTGATGTATGCCGCAAGATTGGAGTCAAGCAATGGCTTTATAGATGTCCTGCTTGTGAGTTTGATGTTCATTTAGATTGTTTAGCTTCTGCCCCTAGGCAGGAAGCTTCACAGTCAACTGCCCTCCAGCACCACCATTCATTCCCAGGGGCCACTAACCAATTCCAGCAGGCTATTATGGGCACACAAGCAAGGTCACATCATTTTATGCATGCCGCAAGCACAGGTGCAATAACTAACAACCATTCCCTA</gDNA_template>
            <first_frame> K  E  E  K  R  G  K  K  M  G  R  V  K  L  N  N  D  Q  T  S  S  L  K  H  F  S  H  P  H  E  L  E  L  C  T  Q  L  Q  D  L  S  P  C  S  G  C  R  L  P  P  S  G  Q  M  Y  I  C  R  P  C  N  F  T  L  H  L  S  C  A  K  F  P  Q  L  I  T  H  P  S  H  P  N  H  S  L  N  L  L  P  T  S  K  Y  P  G  G  Q  F  N  C  D  A  C  K  R  H  G  T  G  F  S  Y  H  C  S  Y  C  E  F  D  L  H  V  I  C  A  S  K  P  L  K  I  T  H  E  L  H  Q  C  S  L  E  L  T  F  K  N  P  Y  A  N  A  K  G  F  S  C  D  V  C  R  K  I  G  V  K  Q  W  L  Y  R  C  P  A  C  E  F  D  V  H  L  D  C  L  A  S  A  P  R  Q  E  A  S  Q  S  T  A  L  Q  H  H  H  S  F  P  G  A  T  N  Q  F  Q  Q  A  I  M  G  T  Q  A  R  S  H  H  F  M  H  A  A  S  T  G  A  I  T  N  N  H  S  L </first_frame>
            <second_frame>  K  K  R  K  E  A  R  R  W  E  G  *  N  *  T  M  I  K  H  Q  A  *  S  T  L  V  I  H  M  N  W  S  Y  A  P  N  S  K  I  *  A  L  V  Q  D  A  D  F  H  H  Q  A  K  C  T  Y  A  G  L  A  T  S  L  F  I  *  A  V  L  N  S  H  S  *  L  L  T  P  L  I  R  T  T  L  S  T  S  S  Q  R  P  N  T  P  V  A  N  S  T  V  M  P  V  N  A  M  E  P  A  S  A  T  I  A  V  I  V  S  L  I  S  M  *  F  V  H  L  N  P  S  K  S  H  T  N  C  T  N  A  R  L  N  S  P  S  R  I  L  M  L  M  P  K  A  S  L  V  M  Y  A  A  R  L  E  S  S  N  G  F  I  D  V  L  L  V  S  L  M  F  I  *  I  V  *  L  L  P  L  G  R  K  L  H  S  Q  L  P  S  S  T  T  I  H  S  Q  G  P  L  T  N  S  S  R  L  L  W  A  H  K  Q  G  H  I  I  L  C  M  P  Q  A  Q  V  Q  *  L  T  T  I  P   </second_frame>
            <third_frame>   R  R  E  K  R  Q  E  D  G  K  G  E  I  E  Q  *  S  N  I  K  P  K  A  L  *  S  S  T  *  I  G  V  M  H  P  T  P  R  S  K  P  L  F  R  M  Q  T  S  T  I  R  P  N  V  H  M  Q  A  L  Q  L  H  S  S  F  K  L  C  *  I  P  T  A  D  Y  S  P  L  S  S  E  P  L  S  Q  P  P  P  N  V  Q  I  P  R  W  P  I  Q  L  *  C  L  *  T  P  W  N  R  L  Q  L  P  L  Q  L  L  *  V  *  S  P  C  D  L  C  I  *  T  P  Q  N  H  T  R  T  A  P  M  L  A  *  T  H  L  Q  E  S  L  C  *  C  Q  R  L  L  L  *  C  M  P  Q  D  W  S  Q  A  M  A  L  *  M  S  C  L  *  V  *  C  S  F  R  L  F  S  F  C  P  *  A  G  S  F  T  V  N  C  P  P  A  P  P  F  I  P  R  G  H  *  P  I  P  A  G  Y  Y  G  H  T  S  K  V  T  S  F  Y  A  C  R  K  H  R  C  N  N  *  Q  P  F  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4503" stop="3784"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>720</number_coding_nucleotides>
                  <number_encoded_amino_acids>240</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEEKRGKKMGRVKLNNDQTSSLKHFSHPHELELCTQLQDLSPCSGCRLPPSGQMYICRPCNFTLHLSCAKFPQLITHPSHPNHSLNLLPTSKYPGGQFNCDACKRHGTGFSYHCSYCEFDLHVICASKPLKITHELHQCSLELTFKNPYANAKGFSCDVCRKIGVKQWLYRCPACEFDVHLDCLASAPRQEASQSTALQHHHSFPGATNQFQQAIMGTQARSHHFMHAASTGAITNNHSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="12985" PGL_stop="20464"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13022" e_stop="13201"/>
            <exon e_start="13289" e_stop="13371"/>
            <exon e_start="14980" e_stop="15035"/>
            <exon e_start="15141" e_stop="15383"/>
            <exon e_start="18341" e_stop="18654"/>
            <exon e_start="18739" e_stop="18895"/>
            <exon e_start="19002" e_stop="19109"/>
            <exon e_start="19183" e_stop="19310"/>
            <exon e_start="19400" e_stop="19528"/>
            <exon e_start="19606" e_stop="19673"/>
            <exon e_start="19755" e_stop="20179"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.089" e_score="0.996"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="0.992"/>
          <exon-intron don_prob="0.999" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13022" e_stop="13201" e_length="180"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="13202" i_stop="13288" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13289" e_stop="13371" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.974">
            <gDNA_intron_boundary i_start="13372" i_stop="14979" i_length="1608"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14980" e_stop="15035" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.975">
            <gDNA_intron_boundary i_start="15036" i_stop="15140" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="15141" e_stop="15383" e_length="243"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.089">
            <gDNA_intron_boundary i_start="15384" i_stop="18340" i_length="2957"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18341" e_stop="18654" e_length="314"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18739" e_stop="18895" e_length="157"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="19002" e_stop="19109" e_length="108"/>
          </exon>
          <intron i_serial="7" don_prob="0.977" acc_prob="0.964">
            <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73"/>
          </intron>
          <exon e_serial="8" e_score="0.992">
            <gDNA_exon_boundary e_start="19183" e_stop="19310" e_length="128"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19311" i_stop="19399" i_length="89"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="19400" e_stop="19528" e_length="129"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.968">
            <gDNA_intron_boundary i_start="19529" i_stop="19605" i_length="77"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="19606" e_stop="19673" e_length="68"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19674" i_stop="19754" i_length="81"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="19755" e_stop="20179" e_length="425"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13022" stop="13201"/>
              <exon start="13289" stop="13371"/>
              <exon start="14980" stop="15035"/>
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            <referenceDNA id="SGN-E360637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18409" stop="18654"/>
              <exon start="18739" stop="18863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18410" stop="18654"/>
              <exon start="18739" stop="18895"/>
              <exon start="19002" stop="19109"/>
              <exon start="19183" stop="19294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18412" stop="18654"/>
              <exon start="18739" stop="18895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18413" stop="18654"/>
              <exon start="18739" stop="18895"/>
              <exon start="19002" stop="19109"/>
              <exon start="19183" stop="19309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18414" stop="18654"/>
              <exon start="18739" stop="18895"/>
              <exon start="19002" stop="19109"/>
              <exon start="19183" stop="19310"/>
              <exon start="19400" stop="19474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18414" stop="18654"/>
              <exon start="18739" stop="18895"/>
              <exon start="19002" stop="19109"/>
              <exon start="19183" stop="19295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18414" stop="18654"/>
              <exon start="18739" stop="18895"/>
              <exon start="19002" stop="19109"/>
              <exon start="19183" stop="19293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18419" stop="18654"/>
              <exon start="18739" stop="18796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18420" stop="18654"/>
              <exon start="18739" stop="18829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18434" stop="18654"/>
              <exon start="18739" stop="18895"/>
              <exon start="19002" stop="19109"/>
              <exon start="19183" stop="19258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18518" stop="18654"/>
              <exon start="18739" stop="18895"/>
              <exon start="19002" stop="19109"/>
              <exon start="19183" stop="19243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18556" stop="18654"/>
              <exon start="18739" stop="18895"/>
              <exon start="19002" stop="19071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18613" stop="18654"/>
              <exon start="18739" stop="18895"/>
              <exon start="19002" stop="19109"/>
              <exon start="19183" stop="19254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18633" stop="18654"/>
              <exon start="18739" stop="18895"/>
              <exon start="19002" stop="19109"/>
              <exon start="19183" stop="19310"/>
              <exon start="19400" stop="19528"/>
              <exon start="19606" stop="19669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18636" stop="18654"/>
              <exon start="18739" stop="18895"/>
              <exon start="19002" stop="19109"/>
              <exon start="19183" stop="19310"/>
              <exon start="19400" stop="19528"/>
              <exon start="19606" stop="19629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18654" stop="18654"/>
              <exon start="18739" stop="18895"/>
              <exon start="19002" stop="19109"/>
              <exon start="19183" stop="19310"/>
              <exon start="19400" stop="19528"/>
              <exon start="19606" stop="19673"/>
              <exon start="19755" stop="19776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18654" stop="18654"/>
              <exon start="18739" stop="18895"/>
              <exon start="19002" stop="19069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19022" stop="19109"/>
              <exon start="19183" stop="19310"/>
              <exon start="19400" stop="19528"/>
              <exon start="19606" stop="19673"/>
              <exon start="19755" stop="20159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19061" stop="19109"/>
              <exon start="19183" stop="19310"/>
              <exon start="19400" stop="19528"/>
              <exon start="19606" stop="19673"/>
              <exon start="19755" stop="20095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19216" stop="19310"/>
              <exon start="19400" stop="19528"/>
              <exon start="19606" stop="19673"/>
              <exon start="19755" stop="20095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19260" stop="19310"/>
              <exon start="19400" stop="19528"/>
              <exon start="19606" stop="19673"/>
              <exon start="19755" stop="19986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19266" stop="19310"/>
              <exon start="19400" stop="19528"/>
              <exon start="19606" stop="19673"/>
              <exon start="19755" stop="19987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19266" stop="19310"/>
              <exon start="19400" stop="19528"/>
              <exon start="19606" stop="19673"/>
              <exon start="19755" stop="19987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19276" stop="19310"/>
              <exon start="19400" stop="19528"/>
              <exon start="19606" stop="19673"/>
              <exon start="19755" stop="20095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19464" stop="19528"/>
              <exon start="19606" stop="19673"/>
              <exon start="19755" stop="19986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19612" stop="19673"/>
              <exon start="19755" stop="20179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19668" stop="19673"/>
              <exon start="19755" stop="20149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19758" stop="20179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19780" stop="20158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19783" stop="20149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225837" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGCAAAAATGGCGTTGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCG : ATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCG : ATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTG : GTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAAA : TATATTCAAATACCAAAAAGAGAAAAAAAATCAAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC : ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG : TATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAG : AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAA : GAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG : AAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAG : CCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTCGTTTGGGTTCAATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTCATGTTTGATTAGTATTTTGAAACCTACATT</gDNA_template>
            <first_frame> E  Q  K  W  R  C  N  G  *  Y  *  R  T  W  W  Q  Q  R  Q  Q  *  L  F  C  *  H  C  H  L  L  N  L  S  N  L  V  L  F  H  *  F  H  L  P  F  N  P  L  F  S  S  S  L  S  L  F  F  S  S  S  :  I  F  I  G  K  M  S  I  D  *  C  V  R  V  R  F  A  Q  L  P  R  G  T  A  M  R  N  R :   S  T  R  L  K  E  M  *  S  Y  V  *  R  H  A  F  S  T   : G  V  S  I  V  F  A  S  T  T  R  R  Y  R  A  L  K  K  *  K  R  D  T  K  T  S  S  C  L  S  M  H  Q  S  Y  Y  S  R  L  L  V  A  E  V  T  S  T  P  C  N  V  N  I  L  *  V  L  C  L  L  Y  K  P  S  L  *  I  F  Y  Y  Y  I  L  K  R  V  C  E  R  E  E   : I  Y  S  N  T  K  K  R  K  K  I  K  K  K  K  G  G  W  D  *  S  I  T  I  C  A  S  F  S  I  S  F  V  V  K  S  *  Y  R  T  M  A  K  F  S  K  N  S  M  V  L  C  F  L  V  A  I  V  F  V  I  S  S  A  S  A  S  T  R  L  K  K  F  N  H  P  T  K  G  D  G  T  L  N  F  L  V  I  G  D  W  G  R  R  G  T  Y  N  Q  S  H  V  A  R  H  :  M  E  R  V  G  E  K  L  D  I  D  F  V  L  S  T  G  D  N  F  Y  D  N  G  L  T  G  V  N  D  T  N  F  V  E  S  F  T  N  I  Y  T  A  K  S  L  Q  K  Q  W  Y  S   : V  L  G  N  H  D  Y  R  G  N  V  E  A  Q  L  S  P  Y  L  R  K  I  D  S  R  W  I  C  L  R  S  F  V  V  N  A   : E  I  A  E  I  F  M  V  D  T  T  P  F  E  E  K  Y  F  T  T  P  K  D  H  I  Y  D  W  R  G  V  L  P  R  H  A  Y  M  A  S  V  V  K  :  E  L  E  K  A  L  S  E  S  T  A  T  W  K  I  V  L  G  H  H  A  I  R  S  A  G  H  H  G  D  T  Q  I  L  V  D  R  F  L  P  I  L  R  :  K  Y  D  V  D  F  Y  M  N  G  H  D  H  C  L  E  H  I  S  D  T  E  S :   P  L  Q  F  L  V  S  G  A  G  S  K  A  W  R  G  D  I  K  G  I  N  R  D  D  V  H  F  F  H  D  G  Q  G  F  M  S  V  E  L  T  P  T  E  A  E  I  K  Y  Y  D  V  F  G  R  I  R  H  R  W  S  R  S  K  N  L  L  H  S  A  M  *  K  K  K  R  I  F  F  G  C  R  Y  *  V  R  C  R  K  E  I  G  F  F  V  F  C  C  *  D  W  I  V  K  G  S  K  S  H  T  F  R  V  R  L  G  S  M  Y  *  N  L  D  G  I  T  Y  D  S  F  A  H  V  *  L  V  F  *  N  L  H  </first_frame>
            <second_frame>  S  K  N  G  V  A  M  D  D  I  D  V  R  G  G  S  R  G  S  N  S  Y  S  A  N  I  A  I  S  *  T  S  Q  I  S  F  C  F  T  N  F  T  C  P  S  T  L  S  F  R  R  P  F  L  C  F  S  A  P  R :   Y  L  L  E  K  *  A  S  I  D  V  Y  G  *  D  L  H  S  F  R  E  G  P  L  *  E  I   : D  L  Q  G  S  K  K  C  D  P  M  F  S  G  M  P  S  L  L  :  V  Y  L  S  C  L  Q  V  L  Q  G  D  T  E  H  *  R  S  R  K  E  I  Q  R  P  V  A  V  Y  L  C  T  N  H  I  I  Q  G  Y  L  *  L  K  *  H  L  H  H  A  M  L  T  Y  Y  E  S  C  V  C  F  T  S  H  H  Y  E  S  F  T  T  T  Y  *  K  E  F  A  K  E  K  K  :  Y  I  Q  I  P  K  R  E  K  K  S  K  K  K  K  E  V  G  T  E  V  *  Q  F  V  L  L  S  Q  F  P  L  L  S  N  P  N  T  E  P  W  L  N  F  P  K  I  P  W  F  C  A  F  W  *  P  L  F  L  L  S  L  V  Q  V  H  L  L  G  L  R  N  L  I  T  L  L  K  V  M  V  L  L  I  S  W  L  L  V  T  G  D  E  G  V  L  I  I  N  L  T  *  L  A  T :   W  K  E  S  E  R  S  *  T  L  I  L  Y  Y  Q  R  V  T  I  S  M  I  M  V  *  Q  E  *  M  I  Q  I  S  *  S  H  L  L  T  Y  T  Q  Q  R  A  Y  K  N  N  G  T  A  :  Y  *  A  T  T  I  T  E  E  T  *  K  H  N  S  V  L  T  L  G  K  L  I  A  D  G  F  V  *  G  L  L  *  L  T  Q  :  K  L  L  K  Y  S  W  W  I  Q  L  H  L  R  R  N  I  S  Q  L  L  R  I  T  S  T  I  G  V  V  C  S  L  D  M  H  T  W  L  A  *  *  K :   N  S  K  R  P  *  V  N  R  Q  Q  H  G  R  L  Y  *  V  T  M  P  L  E  V  Q  D  I  T  V  T  L  R  Y  L  W  I  V  F  F  L  F  L  G :   S  T  M  L  I  F  T  *  T  D  M  T  T  V  L  N  I  L  A  T  L  K   : A  R  C  N  F  *  *  V  E  Q  V  Q  R  H  G  E  E  I  L  K  E  *  I  E  M  M  C  I  F  S  M  M  D  K  V  S  C  L  L  S  *  H  R  Q  R  L  R  S  N  I  M  M  F  L  V  E  L  D  I  G  G  V  G  P  R  I  F  F  T  L  L  C  K  K  K  K  E  S  F  L  V  V  D  T  K  L  D  V  E  K  K  L  D  S  L  F  F  V  V  E  I  G  L  *  K  E  V  N  L  T  H  L  G  F  V  W  V  Q  C  I  R  I  *  M  E  *  H  M  T  V  L  L  M  F  D  *  Y  F  E  T  Y  I </second_frame>
            <third_frame>   A  K  M  A  L  Q  W  M  I  L  T  Y  V  V  A  A  E  A  A  I  A  I  L  L  T  L  P  S  P  K  P  L  K  S  R  F  V  S  L  I  S  L  A  L  Q  P  S  L  F  V  V  P  F  S  V  F  Q  L  L   : D  I  Y  W  K  N  E  H  R  L  M  C  T  G  E  I  C  T  A  S  E  R  D  R  Y  E  K  S  :  I  Y  K  A  Q  R  N  V  I  L  C  L  A  A  C  L  L  Y  W :   C  I  Y  R  V  C  K  Y  Y  K  E  I  Q  S  I  E  E  V  E  K  R  Y  K  D  Q  *  L  S  I  Y  A  P  I  I  L  F  K  A  T  C  S  *  S  N  I  Y  T  M  Q  C  *  H  I  M  S  L  V  F  A  L  Q  A  I  I  M  N  L  L  L  L  H  I  E  K  S  L  R  K  R  R  N :   I  F  K  Y  Q  K  E  K  K  N  Q  K  K  K  R  R  L  G  L  K  Y  N  N  L  C  F  F  L  N  F  L  C  C  Q  I  L  I  Q  N  H  G  *  I  F  Q  K  F  H  G  S  V  L  F  G  S  H  C  F  C  Y  L  *  C  K  C  I  Y  *  A  *  E  I  *  S  P  Y  *  R  *  W  Y  S  *  F  L  G  Y  W  *  L  G  T  K  G  Y  L  *  S  I  S  R  S  S  P   : H  G  K  S  R  R  E  V  R  H  *  F  C  I  I  N  G  *  Q  F  L  *  *  W  F  N  R  S  K  *  Y  K  F  R  R  V  I  Y  *  H  I  H  S  K  E  L  T  K  T  M  V  Q  R :   I  R  Q  P  R  L  Q  R  K  R  R  S  T  T  Q  S  L  P  *  E  N  *  *  Q  M  D  L  F  K  V  F  C  S  *  R  R :   N  C  *  N  I  H  G  G  Y  N  S  I  *  G  E  I  F  H  N  S  *  G  S  H  L  R  L  A  W  C  A  P  *  T  C  I  H  G  *  R  S  K   : R  T  R  K  G  L  E  *  I  D  S  N  M  E  D  C  T  R  S  P  C  H  *  K  C  R  T  S  R  *  H  S  D  T  C  G  S  F  S  S  Y  S  *   : E  V  R  C  *  F  L  H  E  R  T  *  P  L  S  *  T  Y  *  R  H  *  K  :  P  V  A  I  F  S  K  W  S  R  F  K  G  M  E  R  R  Y  *  R  N  K  *  R  *  C  A  F  F  P  *  W  T  R  F  H  V  C  *  V  D  T  D  R  G  *  D  Q  I  L  *  C  F  W  *  N  *  T  *  V  E  *  V  Q  E  S  S  S  L  C  Y  V  K  K  K  K  N  L  F  W  L  *  I  L  S  *  M  *  K  R  N  W  I  L  C  F  L  L  L  R  L  D  C  E  R  K  *  I  S  H  I  *  G  S  F  G  F  N  V  L  E  F  R  W  N  N  I  *  Q  F  C  S  C  L  I  S  I  L  K  P  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18451" stop="18654"/>
                    <exon start="18739" stop="18895"/>
                    <exon start="19002" stop="19109"/>
                    <exon start="19183" stop="19310"/>
                    <exon start="19400" stop="19528"/>
                    <exon start="19606" stop="19673"/>
                    <exon start="19755" stop="19971"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1008</number_coding_nucleotides>
                  <number_encoded_amino_acids>336</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRTMAKFSKNSMVLCFLVAIVFVISSASASTRLKKFNHPTKGDGTLNFLVIGDWGRRGTYNQSHVARHMERVGEKLDIDFVLSTGDNFYDNGLTGVNDTNFVESFTNIYTAKSLQKQWYSVLGNHDYRGNVEAQLSPYLRKIDSRWICLRSFVVNAEIAEIFMVDTTPFEEKYFTTPKDHIYDWRGVLPRHAYMASVVKELEKALSESTATWKIVLGHHAIRSAGHHGDTQILVDRFLPILRKYDVDFYMNGHDHCLEHISDTESPLQFLVSGAGSKAWRGDIKGINRDDVHFFHDGQGFMSVELTPTEAEIKYYDVFGRIRHRWSRSKNLLHSAM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13024" stop="13201"/>
                    <exon start="13289" stop="13371"/>
                    <exon start="14980" stop="15035"/>
                    <exon start="15141" stop="15219"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKMALQWMILTYVVAAEAAIAILLTLPSPKPLKSRFVSLISLALQPSLFVVPFSVFQLLDIYWKNEHRLMCTGEICTASERDRYEKSIYKAQRNVILCLAACLLYWCIYRVCKYYKEIQSIEEVEKRYKDQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15295" stop="15383"/>
                    <exon start="18341" stop="18467"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HIMSLVFALQAIIMNLLLLHIEKSLRKRRNIFKYQKEKKNQKKKRRLGLKYNNLCFFLNFLCCQILIQNHG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="13022" e_stop="13201"/>
            <exon e_start="13289" e_stop="13371"/>
            <exon e_start="14980" e_stop="15035"/>
            <exon e_start="15141" e_stop="15383"/>
            <exon e_start="18341" e_stop="18654"/>
            <exon e_start="18739" e_stop="18895"/>
            <exon e_start="19002" e_stop="19109"/>
            <exon e_start="19183" e_stop="19310"/>
            <exon e_start="19400" e_stop="19528"/>
            <exon e_start="19606" e_stop="19673"/>
            <exon e_start="19755" e_stop="20095"/>
            <exon e_start="20418" e_stop="20464"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.089" e_score="0.996"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="0.992"/>
          <exon-intron don_prob="0.999" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.980" e_score="0.941"/>
          <exon-only e_score="0.532"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13022" e_stop="13201" e_length="180"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="13202" i_stop="13288" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13289" e_stop="13371" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.974">
            <gDNA_intron_boundary i_start="13372" i_stop="14979" i_length="1608"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14980" e_stop="15035" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.975">
            <gDNA_intron_boundary i_start="15036" i_stop="15140" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="15141" e_stop="15383" e_length="243"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.089">
            <gDNA_intron_boundary i_start="15384" i_stop="18340" i_length="2957"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18341" e_stop="18654" e_length="314"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="18655" i_stop="18738" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18739" e_stop="18895" e_length="157"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="18896" i_stop="19001" i_length="106"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="19002" e_stop="19109" e_length="108"/>
          </exon>
          <intron i_serial="7" don_prob="0.977" acc_prob="0.964">
            <gDNA_intron_boundary i_start="19110" i_stop="19182" i_length="73"/>
          </intron>
          <exon e_serial="8" e_score="0.992">
            <gDNA_exon_boundary e_start="19183" e_stop="19310" e_length="128"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19311" i_stop="19399" i_length="89"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="19400" e_stop="19528" e_length="129"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.968">
            <gDNA_intron_boundary i_start="19529" i_stop="19605" i_length="77"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="19606" e_stop="19673" e_length="68"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19674" i_stop="19754" i_length="81"/>
          </intron>
          <exon e_serial="11" e_score="0.941">
            <gDNA_exon_boundary e_start="19755" e_stop="20095" e_length="341"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="20096" i_stop="20417" i_length="322"/>
          </intron>
          <exon e_serial="12" e_score="0.532">
            <gDNA_exon_boundary e_start="20418" e_stop="20464" e_length="47"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13022" stop="13201"/>
              <exon start="13289" stop="13371"/>
              <exon start="14980" stop="15035"/>
              <exon start="15141" stop="15364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13035" stop="13201"/>
              <exon start="13289" stop="13371"/>
              <exon start="14980" stop="15035"/>
              <exon start="15141" stop="15383"/>
              <exon start="18341" stop="18400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13040" stop="13201"/>
              <exon start="13289" stop="13371"/>
              <exon start="14980" stop="15035"/>
              <exon start="15141" stop="15382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18354" stop="18654"/>
              <exon start="18739" stop="18877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18355" stop="18654"/>
              <exon start="18739" stop="18862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18359" stop="18654"/>
              <exon start="18739" stop="18893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18365" stop="18654"/>
              <exon start="18739" stop="18895"/>
              <exon start="19002" stop="19109"/>
              <exon start="19183" stop="19295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18365" stop="18654"/>
              <exon start="18739" stop="18895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361934" strand="+"/>
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            <referenceDNA id="SGN-E362867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18419" stop="18654"/>
              <exon start="18739" stop="18796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18420" stop="18654"/>
              <exon start="18739" stop="18829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18434" stop="18654"/>
              <exon start="18739" stop="18895"/>
              <exon start="19002" stop="19109"/>
              <exon start="19183" stop="19258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18518" stop="18654"/>
              <exon start="18739" stop="18895"/>
              <exon start="19002" stop="19109"/>
              <exon start="19183" stop="19243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18556" stop="18654"/>
              <exon start="18739" stop="18895"/>
              <exon start="19002" stop="19071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18613" stop="18654"/>
              <exon start="18739" stop="18895"/>
              <exon start="19002" stop="19109"/>
              <exon start="19183" stop="19254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18633" stop="18654"/>
              <exon start="18739" stop="18895"/>
              <exon start="19002" stop="19109"/>
              <exon start="19183" stop="19310"/>
              <exon start="19400" stop="19528"/>
              <exon start="19606" stop="19669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18636" stop="18654"/>
              <exon start="18739" stop="18895"/>
              <exon start="19002" stop="19109"/>
              <exon start="19183" stop="19310"/>
              <exon start="19400" stop="19528"/>
              <exon start="19606" stop="19629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18654" stop="18654"/>
              <exon start="18739" stop="18895"/>
              <exon start="19002" stop="19109"/>
              <exon start="19183" stop="19310"/>
              <exon start="19400" stop="19528"/>
              <exon start="19606" stop="19673"/>
              <exon start="19755" stop="19776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18654" stop="18654"/>
              <exon start="18739" stop="18895"/>
              <exon start="19002" stop="19069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19061" stop="19109"/>
              <exon start="19183" stop="19310"/>
              <exon start="19400" stop="19528"/>
              <exon start="19606" stop="19673"/>
              <exon start="19755" stop="20095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19216" stop="19310"/>
              <exon start="19400" stop="19528"/>
              <exon start="19606" stop="19673"/>
              <exon start="19755" stop="20095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19260" stop="19310"/>
              <exon start="19400" stop="19528"/>
              <exon start="19606" stop="19673"/>
              <exon start="19755" stop="19986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19266" stop="19310"/>
              <exon start="19400" stop="19528"/>
              <exon start="19606" stop="19673"/>
              <exon start="19755" stop="19987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19266" stop="19310"/>
              <exon start="19400" stop="19528"/>
              <exon start="19606" stop="19673"/>
              <exon start="19755" stop="19987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19276" stop="19310"/>
              <exon start="19400" stop="19528"/>
              <exon start="19606" stop="19673"/>
              <exon start="19755" stop="20095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19457" stop="19528"/>
              <exon start="19606" stop="19673"/>
              <exon start="19755" stop="20095"/>
              <exon start="20418" stop="20464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360881" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19464" stop="19528"/>
              <exon start="19606" stop="19673"/>
              <exon start="19755" stop="19986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223808" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGCAAAAATGGCGTTGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCG : ATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCG : ATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTG : GTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAAA : TATATTCAAATACCAAAAAGAGAAAAAAAATCAAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC : ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG : TATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAG : AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAA : GAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG : AAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAG : CCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTC : GTGTGCTAATCTAAAAGTGGACAAGTAAGTAGGGTATAAAAAAACGA</gDNA_template>
            <first_frame> E  Q  K  W  R  C  N  G  *  Y  *  R  T  W  W  Q  Q  R  Q  Q  *  L  F  C  *  H  C  H  L  L  N  L  S  N  L  V  L  F  H  *  F  H  L  P  F  N  P  L  F  S  S  S  L  S  L  F  F  S  S  S  :  I  F  I  G  K  M  S  I  D  *  C  V  R  V  R  F  A  Q  L  P  R  G  T  A  M  R  N  R :   S  T  R  L  K  E  M  *  S  Y  V  *  R  H  A  F  S  T   : G  V  S  I  V  F  A  S  T  T  R  R  Y  R  A  L  K  K  *  K  R  D  T  K  T  S  S  C  L  S  M  H  Q  S  Y  Y  S  R  L  L  V  A  E  V  T  S  T  P  C  N  V  N  I  L  *  V  L  C  L  L  Y  K  P  S  L  *  I  F  Y  Y  Y  I  L  K  R  V  C  E  R  E  E   : I  Y  S  N  T  K  K  R  K  K  I  K  K  K  K  G  G  W  D  *  S  I  T  I  C  A  S  F  S  I  S  F  V  V  K  S  *  Y  R  T  M  A  K  F  S  K  N  S  M  V  L  C  F  L  V  A  I  V  F  V  I  S  S  A  S  A  S  T  R  L  K  K  F  N  H  P  T  K  G  D  G  T  L  N  F  L  V  I  G  D  W  G  R  R  G  T  Y  N  Q  S  H  V  A  R  H  :  M  E  R  V  G  E  K  L  D  I  D  F  V  L  S  T  G  D  N  F  Y  D  N  G  L  T  G  V  N  D  T  N  F  V  E  S  F  T  N  I  Y  T  A  K  S  L  Q  K  Q  W  Y  S   : V  L  G  N  H  D  Y  R  G  N  V  E  A  Q  L  S  P  Y  L  R  K  I  D  S  R  W  I  C  L  R  S  F  V  V  N  A   : E  I  A  E  I  F  M  V  D  T  T  P  F  E  E  K  Y  F  T  T  P  K  D  H  I  Y  D  W  R  G  V  L  P  R  H  A  Y  M  A  S  V  V  K  :  E  L  E  K  A  L  S  E  S  T  A  T  W  K  I  V  L  G  H  H  A  I  R  S  A  G  H  H  G  D  T  Q  I  L  V  D  R  F  L  P  I  L  R  :  K  Y  D  V  D  F  Y  M  N  G  H  D  H  C  L  E  H  I  S  D  T  E  S :   P  L  Q  F  L  V  S  G  A  G  S  K  A  W  R  G  D  I  K  G  I  N  R  D  D  V  H  F  F  H  D  G  Q  G  F  M  S  V  E  L  T  P  T  E  A  E  I  K  Y  Y  D  V  F  G  R  I  R  H  R  W  S  R  S  K  N  L  L  H  S  A  M  *  K  K  K  R  I  F  F  G  C  R  Y  *  V  R  C  R  K  E  I  G  F  F  V  F  C  C  *  D  W  I  V  K  G  S  K  S  H  T  F  R  V   : R  V  L  I  *  K  W  T  S  K  *  G  I  K  K  R </first_frame>
            <second_frame>  S  K  N  G  V  A  M  D  D  I  D  V  R  G  G  S  R  G  S  N  S  Y  S  A  N  I  A  I  S  *  T  S  Q  I  S  F  C  F  T  N  F  T  C  P  S  T  L  S  F  R  R  P  F  L  C  F  S  A  P  R :   Y  L  L  E  K  *  A  S  I  D  V  Y  G  *  D  L  H  S  F  R  E  G  P  L  *  E  I   : D  L  Q  G  S  K  K  C  D  P  M  F  S  G  M  P  S  L  L  :  V  Y  L  S  C  L  Q  V  L  Q  G  D  T  E  H  *  R  S  R  K  E  I  Q  R  P  V  A  V  Y  L  C  T  N  H  I  I  Q  G  Y  L  *  L  K  *  H  L  H  H  A  M  L  T  Y  Y  E  S  C  V  C  F  T  S  H  H  Y  E  S  F  T  T  T  Y  *  K  E  F  A  K  E  K  K  :  Y  I  Q  I  P  K  R  E  K  K  S  K  K  K  K  E  V  G  T  E  V  *  Q  F  V  L  L  S  Q  F  P  L  L  S  N  P  N  T  E  P  W  L  N  F  P  K  I  P  W  F  C  A  F  W  *  P  L  F  L  L  S  L  V  Q  V  H  L  L  G  L  R  N  L  I  T  L  L  K  V  M  V  L  L  I  S  W  L  L  V  T  G  D  E  G  V  L  I  I  N  L  T  *  L  A  T :   W  K  E  S  E  R  S  *  T  L  I  L  Y  Y  Q  R  V  T  I  S  M  I  M  V  *  Q  E  *  M  I  Q  I  S  *  S  H  L  L  T  Y  T  Q  Q  R  A  Y  K  N  N  G  T  A  :  Y  *  A  T  T  I  T  E  E  T  *  K  H  N  S  V  L  T  L  G  K  L  I  A  D  G  F  V  *  G  L  L  *  L  T  Q  :  K  L  L  K  Y  S  W  W  I  Q  L  H  L  R  R  N  I  S  Q  L  L  R  I  T  S  T  I  G  V  V  C  S  L  D  M  H  T  W  L  A  *  *  K :   N  S  K  R  P  *  V  N  R  Q  Q  H  G  R  L  Y  *  V  T  M  P  L  E  V  Q  D  I  T  V  T  L  R  Y  L  W  I  V  F  F  L  F  L  G :   S  T  M  L  I  F  T  *  T  D  M  T  T  V  L  N  I  L  A  T  L  K   : A  R  C  N  F  *  *  V  E  Q  V  Q  R  H  G  E  E  I  L  K  E  *  I  E  M  M  C  I  F  S  M  M  D  K  V  S  C  L  L  S  *  H  R  Q  R  L  R  S  N  I  M  M  F  L  V  E  L  D  I  G  G  V  G  P  R  I  F  F  T  L  L  C  K  K  K  K  E  S  F  L  V  V  D  T  K  L  D  V  E  K  K  L  D  S  L  F  F  V  V  E  I  G  L  *  K  E  V  N  L  T  H  L  G  F  :  V  C  *  S  K  S  G  Q  V  S  R  V  *  K  N   </second_frame>
            <third_frame>   A  K  M  A  L  Q  W  M  I  L  T  Y  V  V  A  A  E  A  A  I  A  I  L  L  T  L  P  S  P  K  P  L  K  S  R  F  V  S  L  I  S  L  A  L  Q  P  S  L  F  V  V  P  F  S  V  F  Q  L  L   : D  I  Y  W  K  N  E  H  R  L  M  C  T  G  E  I  C  T  A  S  E  R  D  R  Y  E  K  S  :  I  Y  K  A  Q  R  N  V  I  L  C  L  A  A  C  L  L  Y  W :   C  I  Y  R  V  C  K  Y  Y  K  E  I  Q  S  I  E  E  V  E  K  R  Y  K  D  Q  *  L  S  I  Y  A  P  I  I  L  F  K  A  T  C  S  *  S  N  I  Y  T  M  Q  C  *  H  I  M  S  L  V  F  A  L  Q  A  I  I  M  N  L  L  L  L  H  I  E  K  S  L  R  K  R  R  N :   I  F  K  Y  Q  K  E  K  K  N  Q  K  K  K  R  R  L  G  L  K  Y  N  N  L  C  F  F  L  N  F  L  C  C  Q  I  L  I  Q  N  H  G  *  I  F  Q  K  F  H  G  S  V  L  F  G  S  H  C  F  C  Y  L  *  C  K  C  I  Y  *  A  *  E  I  *  S  P  Y  *  R  *  W  Y  S  *  F  L  G  Y  W  *  L  G  T  K  G  Y  L  *  S  I  S  R  S  S  P   : H  G  K  S  R  R  E  V  R  H  *  F  C  I  I  N  G  *  Q  F  L  *  *  W  F  N  R  S  K  *  Y  K  F  R  R  V  I  Y  *  H  I  H  S  K  E  L  T  K  T  M  V  Q  R :   I  R  Q  P  R  L  Q  R  K  R  R  S  T  T  Q  S  L  P  *  E  N  *  *  Q  M  D  L  F  K  V  F  C  S  *  R  R :   N  C  *  N  I  H  G  G  Y  N  S  I  *  G  E  I  F  H  N  S  *  G  S  H  L  R  L  A  W  C  A  P  *  T  C  I  H  G  *  R  S  K   : R  T  R  K  G  L  E  *  I  D  S  N  M  E  D  C  T  R  S  P  C  H  *  K  C  R  T  S  R  *  H  S  D  T  C  G  S  F  S  S  Y  S  *   : E  V  R  C  *  F  L  H  E  R  T  *  P  L  S  *  T  Y  *  R  H  *  K  :  P  V  A  I  F  S  K  W  S  R  F  K  G  M  E  R  R  Y  *  R  N  K  *  R  *  C  A  F  F  P  *  W  T  R  F  H  V  C  *  V  D  T  D  R  G  *  D  Q  I  L  *  C  F  W  *  N  *  T  *  V  E  *  V  Q  E  S  S  S  L  C  Y  V  K  K  K  K  N  L  F  W  L  *  I  L  S  *  M  *  K  R  N  W  I  L  C  F  L  L  L  R  L  D  C  E  R  K  *  I  S  H  I  *  G  S :   C  A  N  L  K  V  D  K  *  V  G  Y  K  K  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18451" stop="18654"/>
                    <exon start="18739" stop="18895"/>
                    <exon start="19002" stop="19109"/>
                    <exon start="19183" stop="19310"/>
                    <exon start="19400" stop="19528"/>
                    <exon start="19606" stop="19673"/>
                    <exon start="19755" stop="19971"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1008</number_coding_nucleotides>
                  <number_encoded_amino_acids>336</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRTMAKFSKNSMVLCFLVAIVFVISSASASTRLKKFNHPTKGDGTLNFLVIGDWGRRGTYNQSHVARHMERVGEKLDIDFVLSTGDNFYDNGLTGVNDTNFVESFTNIYTAKSLQKQWYSVLGNHDYRGNVEAQLSPYLRKIDSRWICLRSFVVNAEIAEIFMVDTTPFEEKYFTTPKDHIYDWRGVLPRHAYMASVVKELEKALSESTATWKIVLGHHAIRSAGHHGDTQILVDRFLPILRKYDVDFYMNGHDHCLEHISDTESPLQFLVSGAGSKAWRGDIKGINRDDVHFFHDGQGFMSVELTPTEAEIKYYDVFGRIRHRWSRSKNLLHSAM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13024" stop="13201"/>
                    <exon start="13289" stop="13371"/>
                    <exon start="14980" stop="15035"/>
                    <exon start="15141" stop="15219"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKMALQWMILTYVVAAEAAIAILLTLPSPKPLKSRFVSLISLALQPSLFVVPFSVFQLLDIYWKNEHRLMCTGEICTASERDRYEKSIYKAQRNVILCLAACLLYWCIYRVCKYYKEIQSIEEVEKRYKDQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15295" stop="15383"/>
                    <exon start="18341" stop="18467"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HIMSLVFALQAIIMNLLLLHIEKSLRKRRNIFKYQKEKKNQKKKRRLGLKYNNLCFFLNFLCCQILIQNHG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
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            <exon e_start="19606" e_stop="19673"/>
            <exon e_start="19755" e_stop="20179"/>
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        </AGS_line>
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          <exon-intron don_prob="0.997" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.089" e_score="0.996"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.984"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.999" e_score="0.976"/>
          <exon-intron don_prob="0.999" acc_prob="0.968" e_score="0.952"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
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          <intron i_serial="1" don_prob="0.998" acc_prob="0.979">
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          <intron i_serial="4" don_prob="0.000" acc_prob="0.089">
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          <intron i_serial="6" don_prob="0.996" acc_prob="0.997">
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          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
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            <referenceDNA id="SGN-E342264" strand="+"/>
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          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGCAAAAATGGCGTTGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCG : ATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCG : ATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTG : GTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAAA : TATATTCAAATACCAAAAAGAGAAAAAAAATCAAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC : ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG : TATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAG : GAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG : AAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAG : CCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTCGTTTGGGTTCAATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTCATGTTTGATTAGTATTTTGAAACCTACATT</gDNA_template>
            <first_frame> E  Q  K  W  R  C  N  G  *  Y  *  R  T  W  W  Q  Q  R  Q  Q  *  L  F  C  *  H  C  H  L  L  N  L  S  N  L  V  L  F  H  *  F  H  L  P  F  N  P  L  F  S  S  S  L  S  L  F  F  S  S  S  :  I  F  I  G  K  M  S  I  D  *  C  V  R  V  R  F  A  Q  L  P  R  G  T  A  M  R  N  R :   S  T  R  L  K  E  M  *  S  Y  V  *  R  H  A  F  S  T   : G  V  S  I  V  F  A  S  T  T  R  R  Y  R  A  L  K  K  *  K  R  D  T  K  T  S  S  C  L  S  M  H  Q  S  Y  Y  S  R  L  L  V  A  E  V  T  S  T  P  C  N  V  N  I  L  *  V  L  C  L  L  Y  K  P  S  L  *  I  F  Y  Y  Y  I  L  K  R  V  C  E  R  E  E   : I  Y  S  N  T  K  K  R  K  K  I  K  K  K  K  G  G  W  D  *  S  I  T  I  C  A  S  F  S  I  S  F  V  V  K  S  *  Y  R  T  M  A  K  F  S  K  N  S  M  V  L  C  F  L  V  A  I  V  F  V  I  S  S  A  S  A  S  T  R  L  K  K  F  N  H  P  T  K  G  D  G  T  L  N  F  L  V  I  G  D  W  G  R  R  G  T  Y  N  Q  S  H  V  A  R  H  :  M  E  R  V  G  E  K  L  D  I  D  F  V  L  S  T  G  D  N  F  Y  D  N  G  L  T  G  V  N  D  T  N  F  V  E  S  F  T  N  I  Y  T  A  K  S  L  Q  K  Q  W  Y  S   : V  L  G  N  H  D  Y  R  G  N  V  E  A  Q  L  S  P  Y  L  R  K  I  D  S  R  W  I  C  L  R  S  F  V  V  N  A   : G  T  R  K  G  L  E  *  I  D  S  N  M  E  D  C  T  R  S  P  C  H  *  K  C  R  T  S  R  *  H  S  D  T  C  G  S  F  S  S  Y  S  *   : E  V  R  C  *  F  L  H  E  R  T  *  P  L  S  *  T  Y  *  R  H  *  K  :  P  V  A  I  F  S  K  W  S  R  F  K  G  M  E  R  R  Y  *  R  N  K  *  R  *  C  A  F  F  P  *  W  T  R  F  H  V  C  *  V  D  T  D  R  G  *  D  Q  I  L  *  C  F  W  *  N  *  T  *  V  E  *  V  Q  E  S  S  S  L  C  Y  V  K  K  K  K  N  L  F  W  L  *  I  L  S  *  M  *  K  R  N  W  I  L  C  F  L  L  L  R  L  D  C  E  R  K  *  I  S  H  I  *  G  S  F  G  F  N  V  L  E  F  R  W  N  N  I  *  Q  F  C  S  C  L  I  S  I  L  K  P  T   </first_frame>
            <second_frame>  S  K  N  G  V  A  M  D  D  I  D  V  R  G  G  S  R  G  S  N  S  Y  S  A  N  I  A  I  S  *  T  S  Q  I  S  F  C  F  T  N  F  T  C  P  S  T  L  S  F  R  R  P  F  L  C  F  S  A  P  R :   Y  L  L  E  K  *  A  S  I  D  V  Y  G  *  D  L  H  S  F  R  E  G  P  L  *  E  I   : D  L  Q  G  S  K  K  C  D  P  M  F  S  G  M  P  S  L  L  :  V  Y  L  S  C  L  Q  V  L  Q  G  D  T  E  H  *  R  S  R  K  E  I  Q  R  P  V  A  V  Y  L  C  T  N  H  I  I  Q  G  Y  L  *  L  K  *  H  L  H  H  A  M  L  T  Y  Y  E  S  C  V  C  F  T  S  H  H  Y  E  S  F  T  T  T  Y  *  K  E  F  A  K  E  K  K  :  Y  I  Q  I  P  K  R  E  K  K  S  K  K  K  K  E  V  G  T  E  V  *  Q  F  V  L  L  S  Q  F  P  L  L  S  N  P  N  T  E  P  W  L  N  F  P  K  I  P  W  F  C  A  F  W  *  P  L  F  L  L  S  L  V  Q  V  H  L  L  G  L  R  N  L  I  T  L  L  K  V  M  V  L  L  I  S  W  L  L  V  T  G  D  E  G  V  L  I  I  N  L  T  *  L  A  T :   W  K  E  S  E  R  S  *  T  L  I  L  Y  Y  Q  R  V  T  I  S  M  I  M  V  *  Q  E  *  M  I  Q  I  S  *  S  H  L  L  T  Y  T  Q  Q  R  A  Y  K  N  N  G  T  A  :  Y  *  A  T  T  I  T  E  E  T  *  K  H  N  S  V  L  T  L  G  K  L  I  A  D  G  F  V  *  G  L  L  *  L  T  Q  :  E  L  E  K  A  L  S  E  S  T  A  T  W  K  I  V  L  G  H  H  A  I  R  S  A  G  H  H  G  D  T  Q  I  L  V  D  R  F  L  P  I  L  R  :  K  Y  D  V  D  F  Y  M  N  G  H  D  H  C  L  E  H  I  S  D  T  E  S :   P  L  Q  F  L  V  S  G  A  G  S  K  A  W  R  G  D  I  K  G  I  N  R  D  D  V  H  F  F  H  D  G  Q  G  F  M  S  V  E  L  T  P  T  E  A  E  I  K  Y  Y  D  V  F  G  R  I  R  H  R  W  S  R  S  K  N  L  L  H  S  A  M  *  K  K  K  R  I  F  F  G  C  R  Y  *  V  R  C  R  K  E  I  G  F  F  V  F  C  C  *  D  W  I  V  K  G  S  K  S  H  T  F  R  V  R  L  G  S  M  Y  *  N  L  D  G  I  T  Y  D  S  F  A  H  V  *  L  V  F  *  N  L  H  </second_frame>
            <third_frame>   A  K  M  A  L  Q  W  M  I  L  T  Y  V  V  A  A  E  A  A  I  A  I  L  L  T  L  P  S  P  K  P  L  K  S  R  F  V  S  L  I  S  L  A  L  Q  P  S  L  F  V  V  P  F  S  V  F  Q  L  L   : D  I  Y  W  K  N  E  H  R  L  M  C  T  G  E  I  C  T  A  S  E  R  D  R  Y  E  K  S  :  I  Y  K  A  Q  R  N  V  I  L  C  L  A  A  C  L  L  Y  W :   C  I  Y  R  V  C  K  Y  Y  K  E  I  Q  S  I  E  E  V  E  K  R  Y  K  D  Q  *  L  S  I  Y  A  P  I  I  L  F  K  A  T  C  S  *  S  N  I  Y  T  M  Q  C  *  H  I  M  S  L  V  F  A  L  Q  A  I  I  M  N  L  L  L  L  H  I  E  K  S  L  R  K  R  R  N :   I  F  K  Y  Q  K  E  K  K  N  Q  K  K  K  R  R  L  G  L  K  Y  N  N  L  C  F  F  L  N  F  L  C  C  Q  I  L  I  Q  N  H  G  *  I  F  Q  K  F  H  G  S  V  L  F  G  S  H  C  F  C  Y  L  *  C  K  C  I  Y  *  A  *  E  I  *  S  P  Y  *  R  *  W  Y  S  *  F  L  G  Y  W  *  L  G  T  K  G  Y  L  *  S  I  S  R  S  S  P   : H  G  K  S  R  R  E  V  R  H  *  F  C  I  I  N  G  *  Q  F  L  *  *  W  F  N  R  S  K  *  Y  K  F  R  R  V  I  Y  *  H  I  H  S  K  E  L  T  K  T  M  V  Q  R :   I  R  Q  P  R  L  Q  R  K  R  R  S  T  T  Q  S  L  P  *  E  N  *  *  Q  M  D  L  F  K  V  F  C  S  *  R  R :   N  S  K  R  P  *  V  N  R  Q  Q  H  G  R  L  Y  *  V  T  M  P  L  E  V  Q  D  I  T  V  T  L  R  Y  L  W  I  V  F  F  L  F  L  G :   S  T  M  L  I  F  T  *  T  D  M  T  T  V  L  N  I  L  A  T  L  K   : A  R  C  N  F  *  *  V  E  Q  V  Q  R  H  G  E  E  I  L  K  E  *  I  E  M  M  C  I  F  S  M  M  D  K  V  S  C  L  L  S  *  H  R  Q  R  L  R  S  N  I  M  M  F  L  V  E  L  D  I  G  G  V  G  P  R  I  F  F  T  L  L  C  K  K  K  K  E  S  F  L  V  V  D  T  K  L  D  V  E  K  K  L  D  S  L  F  F  V  V  E  I  G  L  *  K  E  V  N  L  T  H  L  G  F  V  W  V  Q  C  I  R  I  *  M  E  *  H  M  T  V  L  L  M  F  D  *  Y  F  E  T  Y  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18451" stop="18654"/>
                    <exon start="18739" stop="18895"/>
                    <exon start="19002" stop="19109"/>
                    <exon start="19400" stop="19422"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRTMAKFSKNSMVLCFLVAIVFVISSASASTRLKKFNHPTKGDGTLNFLVIGDWGRRGTYNQSHVARHMERVGEKLDIDFVLSTGDNFYDNGLTGVNDTNFVESFTNIYTAKSLQKQWYSVLGNHDYRGNVEAQLSPYLRKIDSRWICLRSFVVNAGTRKGLE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19101" stop="19109"/>
                    <exon start="19400" stop="19528"/>
                    <exon start="19606" stop="19673"/>
                    <exon start="19755" stop="19971"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTQELEKALSESTATWKIVLGHHAIRSAGHHGDTQILVDRFLPILRKYDVDFYMNGHDHCLEHISDTESPLQFLVSGAGSKAWRGDIKGINRDDVHFFHDGQGFMSVELTPTEAEIKYYDVFGRIRHRWSRSKNLLHSAM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13024" stop="13201"/>
                    <exon start="13289" stop="13371"/>
                    <exon start="14980" stop="15035"/>
                    <exon start="15141" stop="15219"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKMALQWMILTYVVAAEAAIAILLTLPSPKPLKSRFVSLISLALQPSLFVVPFSVFQLLDIYWKNEHRLMCTGEICTASERDRYEKSIYKAQRNVILCLAACLLYWCIYRVCKYYKEIQSIEEVEKRYKDQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15295" stop="15383"/>
                    <exon start="18341" stop="18467"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HIMSLVFALQAIIMNLLLLHIEKSLRKRRNIFKYQKEKKNQKKKRRLGLKYNNLCFFLNFLCCQILIQNHG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="13022" e_stop="13201"/>
            <exon e_start="13289" e_stop="13371"/>
            <exon e_start="14980" e_stop="15035"/>
            <exon e_start="15141" e_stop="15417"/>
            <exon e_start="17524" e_stop="17559"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.996"/>
          <exon-only e_score="0.722"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13022" e_stop="13201" e_length="180"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="13202" i_stop="13288" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13289" e_stop="13371" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.974">
            <gDNA_intron_boundary i_start="13372" i_stop="14979" i_length="1608"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14980" e_stop="15035" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.975">
            <gDNA_intron_boundary i_start="15036" i_stop="15140" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="15141" e_stop="15417" e_length="277"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="15418" i_stop="17523" i_length="2106"/>
          </intron>
          <exon e_serial="5" e_score="0.722">
            <gDNA_exon_boundary e_start="17524" e_stop="17559" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13022" stop="13201"/>
              <exon start="13289" stop="13371"/>
              <exon start="14980" stop="15035"/>
              <exon start="15141" stop="15364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13040" stop="13201"/>
              <exon start="13289" stop="13371"/>
              <exon start="14980" stop="15035"/>
              <exon start="15141" stop="15382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13182" stop="13201"/>
              <exon start="13289" stop="13371"/>
              <exon start="14980" stop="15035"/>
              <exon start="15141" stop="15417"/>
              <exon start="17524" stop="17559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200219" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGCAAAAATGGCGTTGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCG : ATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCG : ATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTG : GTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAAAGTCTTAACAATATATGGAAATTTCTTTATAATTC : CAAAAAAGAGAAAAAACAAAGCAAATCGAATTTATT</gDNA_template>
            <first_frame> E  Q  K  W  R  C  N  G  *  Y  *  R  T  W  W  Q  Q  R  Q  Q  *  L  F  C  *  H  C  H  L  L  N  L  S  N  L  V  L  F  H  *  F  H  L  P  F  N  P  L  F  S  S  S  L  S  L  F  F  S  S  S  :  I  F  I  G  K  M  S  I  D  *  C  V  R  V  R  F  A  Q  L  P  R  G  T  A  M  R  N  R :   S  T  R  L  K  E  M  *  S  Y  V  *  R  H  A  F  S  T   : G  V  S  I  V  F  A  S  T  T  R  R  Y  R  A  L  K  K  *  K  R  D  T  K  T  S  S  C  L  S  M  H  Q  S  Y  Y  S  R  L  L  V  A  E  V  T  S  T  P  C  N  V  N  I  L  *  V  L  C  L  L  Y  K  P  S  L  *  I  F  Y  Y  Y  I  L  K  R  V  C  E  R  E  E  S  L  N  N  I  W  K  F  L  Y  N  S :   K  K  E  K  K  Q  S  K  S  N  L   </first_frame>
            <second_frame>  S  K  N  G  V  A  M  D  D  I  D  V  R  G  G  S  R  G  S  N  S  Y  S  A  N  I  A  I  S  *  T  S  Q  I  S  F  C  F  T  N  F  T  C  P  S  T  L  S  F  R  R  P  F  L  C  F  S  A  P  R :   Y  L  L  E  K  *  A  S  I  D  V  Y  G  *  D  L  H  S  F  R  E  G  P  L  *  E  I   : D  L  Q  G  S  K  K  C  D  P  M  F  S  G  M  P  S  L  L  :  V  Y  L  S  C  L  Q  V  L  Q  G  D  T  E  H  *  R  S  R  K  E  I  Q  R  P  V  A  V  Y  L  C  T  N  H  I  I  Q  G  Y  L  *  L  K  *  H  L  H  H  A  M  L  T  Y  Y  E  S  C  V  C  F  T  S  H  H  Y  E  S  F  T  T  T  Y  *  K  E  F  A  K  E  K  K  V  L  T  I  Y  G  N  F  F  I  I   : P  K  K  R  K  N  K  A  N  R  I  Y  </second_frame>
            <third_frame>   A  K  M  A  L  Q  W  M  I  L  T  Y  V  V  A  A  E  A  A  I  A  I  L  L  T  L  P  S  P  K  P  L  K  S  R  F  V  S  L  I  S  L  A  L  Q  P  S  L  F  V  V  P  F  S  V  F  Q  L  L   : D  I  Y  W  K  N  E  H  R  L  M  C  T  G  E  I  C  T  A  S  E  R  D  R  Y  E  K  S  :  I  Y  K  A  Q  R  N  V  I  L  C  L  A  A  C  L  L  Y  W :   C  I  Y  R  V  C  K  Y  Y  K  E  I  Q  S  I  E  E  V  E  K  R  Y  K  D  Q  *  L  S  I  Y  A  P  I  I  L  F  K  A  T  C  S  *  S  N  I  Y  T  M  Q  C  *  H  I  M  S  L  V  F  A  L  Q  A  I  I  M  N  L  L  L  L  H  I  E  K  S  L  R  K  R  R  K  S  *  Q  Y  M  E  I  S  L  *  F  :  Q  K  R  E  K  T  K  Q  I  E  F  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13024" stop="13201"/>
                    <exon start="13289" stop="13371"/>
                    <exon start="14980" stop="15035"/>
                    <exon start="15141" stop="15219"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKMALQWMILTYVVAAEAAIAILLTLPSPKPLKSRFVSLISLALQPSLFVVPFSVFQLLDIYWKNEHRLMCTGEICTASERDRYEKSIYKAQRNVILCLAACLLYWCIYRVCKYYKEIQSIEEVEKRYKDQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="13007" e_stop="13201"/>
            <exon e_start="13289" e_stop="13371"/>
            <exon e_start="14980" e_stop="15035"/>
            <exon e_start="15141" e_stop="15435"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="0.995"/>
          <exon-intron don_prob="0.997" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="13007" e_stop="13201" e_length="195"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="13202" i_stop="13288" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13289" e_stop="13371" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.974">
            <gDNA_intron_boundary i_start="13372" i_stop="14979" i_length="1608"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14980" e_stop="15035" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.975">
            <gDNA_intron_boundary i_start="15036" i_stop="15140" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="0.969">
            <gDNA_exon_boundary e_start="15141" e_stop="15435" e_length="295"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13007" stop="13201"/>
              <exon start="13289" stop="13371"/>
              <exon start="14980" stop="15035"/>
              <exon start="15141" stop="15435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13022" stop="13201"/>
              <exon start="13289" stop="13371"/>
              <exon start="14980" stop="15035"/>
              <exon start="15141" stop="15364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13040" stop="13201"/>
              <exon start="13289" stop="13371"/>
              <exon start="14980" stop="15035"/>
              <exon start="15141" stop="15382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349342" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTACACCAAAAAAGAGCAAAAATGGCGTTGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCG : ATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCG : ATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTG : GTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAAAGTCTTAACAATATATGGAAATTTCTTTATAATTCACTTTCCAAAATCTTTGT</gDNA_template>
            <first_frame> N  Y  T  K  K  E  Q  K  W  R  C  N  G  *  Y  *  R  T  W  W  Q  Q  R  Q  Q  *  L  F  C  *  H  C  H  L  L  N  L  S  N  L  V  L  F  H  *  F  H  L  P  F  N  P  L  F  S  S  S  L  S  L  F  F  S  S  S  :  I  F  I  G  K  M  S  I  D  *  C  V  R  V  R  F  A  Q  L  P  R  G  T  A  M  R  N  R :   S  T  R  L  K  E  M  *  S  Y  V  *  R  H  A  F  S  T   : G  V  S  I  V  F  A  S  T  T  R  R  Y  R  A  L  K  K  *  K  R  D  T  K  T  S  S  C  L  S  M  H  Q  S  Y  Y  S  R  L  L  V  A  E  V  T  S  T  P  C  N  V  N  I  L  *  V  L  C  L  L  Y  K  P  S  L  *  I  F  Y  Y  Y  I  L  K  R  V  C  E  R  E  E  S  L  N  N  I  W  K  F  L  Y  N  S  L  S  K  I  F   </first_frame>
            <second_frame>  I  T  P  K  K  S  K  N  G  V  A  M  D  D  I  D  V  R  G  G  S  R  G  S  N  S  Y  S  A  N  I  A  I  S  *  T  S  Q  I  S  F  C  F  T  N  F  T  C  P  S  T  L  S  F  R  R  P  F  L  C  F  S  A  P  R :   Y  L  L  E  K  *  A  S  I  D  V  Y  G  *  D  L  H  S  F  R  E  G  P  L  *  E  I   : D  L  Q  G  S  K  K  C  D  P  M  F  S  G  M  P  S  L  L  :  V  Y  L  S  C  L  Q  V  L  Q  G  D  T  E  H  *  R  S  R  K  E  I  Q  R  P  V  A  V  Y  L  C  T  N  H  I  I  Q  G  Y  L  *  L  K  *  H  L  H  H  A  M  L  T  Y  Y  E  S  C  V  C  F  T  S  H  H  Y  E  S  F  T  T  T  Y  *  K  E  F  A  K  E  K  K  V  L  T  I  Y  G  N  F  F  I  I  H  F  P  K  S  L  </second_frame>
            <third_frame>   L  H  Q  K  R  A  K  M  A  L  Q  W  M  I  L  T  Y  V  V  A  A  E  A  A  I  A  I  L  L  T  L  P  S  P  K  P  L  K  S  R  F  V  S  L  I  S  L  A  L  Q  P  S  L  F  V  V  P  F  S  V  F  Q  L  L   : D  I  Y  W  K  N  E  H  R  L  M  C  T  G  E  I  C  T  A  S  E  R  D  R  Y  E  K  S  :  I  Y  K  A  Q  R  N  V  I  L  C  L  A  A  C  L  L  Y  W :   C  I  Y  R  V  C  K  Y  Y  K  E  I  Q  S  I  E  E  V  E  K  R  Y  K  D  Q  *  L  S  I  Y  A  P  I  I  L  F  K  A  T  C  S  *  S  N  I  Y  T  M  Q  C  *  H  I  M  S  L  V  F  A  L  Q  A  I  I  M  N  L  L  L  L  H  I  E  K  S  L  R  K  R  R  K  S  *  Q  Y  M  E  I  S  L  *  F  T  F  Q  N  L  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13009" stop="13201"/>
                    <exon start="13289" stop="13371"/>
                    <exon start="14980" stop="15035"/>
                    <exon start="15141" stop="15219"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHQKRAKMALQWMILTYVVAAEAAIAILLTLPSPKPLKSRFVSLISLALQPSLFVVPFSVFQLLDIYWKNEHRLMCTGEICTASERDRYEKSIYKAQRNVILCLAACLLYWCIYRVCKYYKEIQSIEEVEKRYKDQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="13106" e_stop="13371"/>
            <exon e_start="14980" e_stop="15035"/>
            <exon e_start="15141" e_stop="15391"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13106" e_stop="13371" e_length="266"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.974">
            <gDNA_intron_boundary i_start="13372" i_stop="14979" i_length="1608"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14980" e_stop="15035" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.975">
            <gDNA_intron_boundary i_start="15036" i_stop="15140" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="0.972">
            <gDNA_exon_boundary e_start="15141" e_stop="15391" e_length="251"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13106" stop="13371"/>
              <exon start="14980" stop="15035"/>
              <exon start="15141" stop="15391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713422" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCGGTACTTCATTTCTGTTTGCTACTTCCTTATTTCTTATAATTATGTGATATTGAGACTTAATTTTTGTTTTTGTTCTTCTTCTCTTAGATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCG : ATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTG : GTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAAAGTCTTAAC</gDNA_template>
            <first_frame> L  L  N  L  S  N  L  V  L  F  H  *  F  H  L  P  F  N  P  L  F  S  S  S  L  S  L  F  F  S  S  S  V  L  H  F  C  L  L  L  P  Y  F  L  *  L  C  D  I  E  T  *  F  L  F  L  F  F  F  S  *  I  F  I  G  K  M  S  I  D  *  C  V  R  V  R  F  A  Q  L  P  R  G  T  A  M  R  N  R :   S  T  R  L  K  E  M  *  S  Y  V  *  R  H  A  F  S  T   : G  V  S  I  V  F  A  S  T  T  R  R  Y  R  A  L  K  K  *  K  R  D  T  K  T  S  S  C  L  S  M  H  Q  S  Y  Y  S  R  L  L  V  A  E  V  T  S  T  P  C  N  V  N  I  L  *  V  L  C  L  L  Y  K  P  S  L  *  I  F  Y  Y  Y  I  L  K  R  V  C  E  R  E  E  S  L  N </first_frame>
            <second_frame>  S  *  T  S  Q  I  S  F  C  F  T  N  F  T  C  P  S  T  L  S  F  R  R  P  F  L  C  F  S  A  P  R  Y  F  I  S  V  C  Y  F  L  I  S  Y  N  Y  V  I  L  R  L  N  F  C  F  C  S  S  S  L  R  Y  L  L  E  K  *  A  S  I  D  V  Y  G  *  D  L  H  S  F  R  E  G  P  L  *  E  I   : D  L  Q  G  S  K  K  C  D  P  M  F  S  G  M  P  S  L  L  :  V  Y  L  S  C  L  Q  V  L  Q  G  D  T  E  H  *  R  S  R  K  E  I  Q  R  P  V  A  V  Y  L  C  T  N  H  I  I  Q  G  Y  L  *  L  K  *  H  L  H  H  A  M  L  T  Y  Y  E  S  C  V  C  F  T  S  H  H  Y  E  S  F  T  T  T  Y  *  K  E  F  A  K  E  K  K  V  L   </second_frame>
            <third_frame>   P  K  P  L  K  S  R  F  V  S  L  I  S  L  A  L  Q  P  S  L  F  V  V  P  F  S  V  F  Q  L  L  G  T  S  F  L  F  A  T  S  L  F  L  I  I  M  *  Y  *  D  L  I  F  V  F  V  L  L  L  L  D  I  Y  W  K  N  E  H  R  L  M  C  T  G  E  I  C  T  A  S  E  R  D  R  Y  E  K  S  :  I  Y  K  A  Q  R  N  V  I  L  C  L  A  A  C  L  L  Y  W :   C  I  Y  R  V  C  K  Y  Y  K  E  I  Q  S  I  E  E  V  E  K  R  Y  K  D  Q  *  L  S  I  Y  A  P  I  I  L  F  K  A  T  C  S  *  S  N  I  Y  T  M  Q  C  *  H  I  M  S  L  V  F  A  L  Q  A  I  I  M  N  L  L  L  L  H  I  E  K  S  L  R  K  R  R  K  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13255" stop="13371"/>
                    <exon start="14980" stop="15035"/>
                    <exon start="15141" stop="15219"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLIFVFVLLLLDIYWKNEHRLMCTGEICTASERDRYEKSIYKAQRNVILCLAACLLYWCIYRVCKYYKEIQSIEEVEKRYKDQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13113" stop="13307"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSQISFCFTNFTCPSTLSFRRPFLCFSAPRYFISVCYFLISYNYVILRLNFCFCSSSLRYLLEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="12985" e_stop="13371"/>
            <exon e_start="14980" e_stop="15035"/>
            <exon e_start="15141" e_stop="15383"/>
            <exon e_start="18341" e_stop="18388"/>
            <exon e_start="18456" e_stop="18481"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.974" e_score="0.997"/>
          <exon-intron don_prob="0.979" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.089" e_score="0.984"/>
          <exon-intron don_prob="0.348" acc_prob="0.221" e_score="0.667"/>
          <exon-only e_score="0.423"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="12985" e_stop="13371" e_length="387"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.974">
            <gDNA_intron_boundary i_start="13372" i_stop="14979" i_length="1608"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14980" e_stop="15035" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.975">
            <gDNA_intron_boundary i_start="15036" i_stop="15140" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="15141" e_stop="15383" e_length="243"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.089">
            <gDNA_intron_boundary i_start="15384" i_stop="18340" i_length="2957"/>
          </intron>
          <exon e_serial="4" e_score="0.667">
            <gDNA_exon_boundary e_start="18341" e_stop="18388" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="0.348" acc_prob="0.221">
            <gDNA_intron_boundary i_start="18389" i_stop="18455" i_length="67"/>
          </intron>
          <exon e_serial="5" e_score="0.423">
            <gDNA_exon_boundary e_start="18456" e_stop="18481" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12985" stop="13371"/>
              <exon start="14980" stop="15035"/>
              <exon start="15141" stop="15383"/>
              <exon start="18341" stop="18388"/>
              <exon start="18456" stop="18481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723170" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATACGAAGAAGAAAAGAAAAAATTACACCAAAAAAGAGCAAAAATGGCGTTGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCGGTACTTCATTTCTGTTTGCTACTTCCTTATTTCTTATAATTATGTGATATTGAGACTTAATTTTTGTTTTTGTTCTTCTTCTCTTAGATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCG : ATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTG : GTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAAA : TATATTCAAATACCAAAAAGAGAAAAAAAATCAAAAAAAAAAAAGGAG : AACCATGGCTAAATTTTCCAAAAATT</gDNA_template>
            <first_frame> Q  Y  E  E  E  K  K  K  L  H  Q  K  R  A  K  M  A  L  Q  W  M  I  L  T  Y  V  V  A  A  E  A  A  I  A  I  L  L  T  L  P  S  P  K  P  L  K  S  R  F  V  S  L  I  S  L  A  L  Q  P  S  L  F  V  V  P  F  S  V  F  Q  L  L  G  T  S  F  L  F  A  T  S  L  F  L  I  I  M  *  Y  *  D  L  I  F  V  F  V  L  L  L  L  D  I  Y  W  K  N  E  H  R  L  M  C  T  G  E  I  C  T  A  S  E  R  D  R  Y  E  K  S  :  I  Y  K  A  Q  R  N  V  I  L  C  L  A  A  C  L  L  Y  W :   C  I  Y  R  V  C  K  Y  Y  K  E  I  Q  S  I  E  E  V  E  K  R  Y  K  D  Q  *  L  S  I  Y  A  P  I  I  L  F  K  A  T  C  S  *  S  N  I  Y  T  M  Q  C  *  H  I  M  S  L  V  F  A  L  Q  A  I  I  M  N  L  L  L  L  H  I  E  K  S  L  R  K  R  R  N :   I  F  K  Y  Q  K  E  K  K  N  Q  K  K  K  R  R :   T  M  A  K  F  S  K  N  </first_frame>
            <second_frame>  N  T  K  K  K  R  K  N  Y  T  K  K  E  Q  K  W  R  C  N  G  *  Y  *  R  T  W  W  Q  Q  R  Q  Q  *  L  F  C  *  H  C  H  L  L  N  L  S  N  L  V  L  F  H  *  F  H  L  P  F  N  P  L  F  S  S  S  L  S  L  F  F  S  S  S  V  L  H  F  C  L  L  L  P  Y  F  L  *  L  C  D  I  E  T  *  F  L  F  L  F  F  F  S  *  I  F  I  G  K  M  S  I  D  *  C  V  R  V  R  F  A  Q  L  P  R  G  T  A  M  R  N  R :   S  T  R  L  K  E  M  *  S  Y  V  *  R  H  A  F  S  T   : G  V  S  I  V  F  A  S  T  T  R  R  Y  R  A  L  K  K  *  K  R  D  T  K  T  S  S  C  L  S  M  H  Q  S  Y  Y  S  R  L  L  V  A  E  V  T  S  T  P  C  N  V  N  I  L  *  V  L  C  L  L  Y  K  P  S  L  *  I  F  Y  Y  Y  I  L  K  R  V  C  E  R  E  E   : I  Y  S  N  T  K  K  R  K  K  I  K  K  K  K  G   : E  P  W  L  N  F  P  K  I </second_frame>
            <third_frame>   I  R  R  R  K  E  K  I  T  P  K  K  S  K  N  G  V  A  M  D  D  I  D  V  R  G  G  S  R  G  S  N  S  Y  S  A  N  I  A  I  S  *  T  S  Q  I  S  F  C  F  T  N  F  T  C  P  S  T  L  S  F  R  R  P  F  L  C  F  S  A  P  R  Y  F  I  S  V  C  Y  F  L  I  S  Y  N  Y  V  I  L  R  L  N  F  C  F  C  S  S  S  L  R  Y  L  L  E  K  *  A  S  I  D  V  Y  G  *  D  L  H  S  F  R  E  G  P  L  *  E  I   : D  L  Q  G  S  K  K  C  D  P  M  F  S  G  M  P  S  L  L  :  V  Y  L  S  C  L  Q  V  L  Q  G  D  T  E  H  *  R  S  R  K  E  I  Q  R  P  V  A  V  Y  L  C  T  N  H  I  I  Q  G  Y  L  *  L  K  *  H  L  H  H  A  M  L  T  Y  Y  E  S  C  V  C  F  T  S  H  H  Y  E  S  F  T  T  T  Y  *  K  E  F  A  K  E  K  K  :  Y  I  Q  I  P  K  R  E  K  K  S  K  K  K  K  E  :  N  H  G  *  I  F  Q  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12985" stop="13248"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QYEEEKKKLHQKRAKMALQWMILTYVVAAEAAIAILLTLPSPKPLKSRFVSLISLALQPSLFVVPFSVFQLLGTSFLFATSLFLIIM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="7" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13255" stop="13371"/>
                    <exon start="14980" stop="15035"/>
                    <exon start="15141" stop="15219"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLIFVFVLLLLDIYWKNEHRLMCTGEICTASERDRYEKSIYKAQRNVILCLAACLLYWCIYRVCKYYKEIQSIEEVEKRYKDQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="7" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13113" stop="13307"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSQISFCFTNFTCPSTLSFRRPFLCFSAPRYFISVCYFLISYNYVILRLNFCFCSSSLRYLLEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="16640" PGL_stop="15385"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16640" e_stop="15385"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16640" e_stop="15385" e_length="1256"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16640" stop="16081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16638" stop="16020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16612" stop="16219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16493" stop="15937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16491" stop="15842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16283" stop="15760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16257" stop="15635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16060" stop="15387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15561" stop="15385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226260" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCCCAGTCAGCTCGCCCTGGCTATTCCTCAAACATGAGAGGAATTCCAGTGCAATCGATTCACCAGAAACCTGCCGGAATCAAGCAGGCCTCCAAGGTTGTTCAGATTCCGGTCCATTTCGTTAGTTCGGATCCCGAGCGGTCCGTTTTGGCCTCGGCGACAAAGAAACCTGAGCCGGATAGGTCCGGTTCAGCGTTGAAGATCCAGAAGGTATTCAGAGGCTTTTTGGTGAGAAAAAGCGTGAAGAAAATCAAGTTGATACGAAAAGAGGTGGAAGATGTTGAGCGGAAGCTTTTGTGTAGAGAAACGGCGGAGTTGATTTGTAGAGATGAAAGGGAAAGGTTGCGGGTGAATGAGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAACCAGTCAATCAGACCGGAGACATCCCCAATTCAACAGGAAAACAGGATGAAGATGGAAAATTGACAAATCAGAATGAACTTTGTCATCTGTCAGAGCAGAGTGTGGATGTAGAAACTCAAGCAGCATCAAATGATGAGAAAACACCCATAGAGGGTGAACACGATGTAGCACCGCTGAATGAGAAGCGTGGAGGATTGCAGGAGGTGAAGCAGGAAACGGACTGTCCAATGCTCGAATGTGTGGAGGAAAGTGTGGAGAGAGGTGAAGTTGGGGATTTGATCGAAGTAGTTGAGGATGTGAATGAGAATGAGAATGAGAATGAAACAAGGTCACACAAGTTTGAAGGGGGAGAAGAGAGTAGAAGAAACCGAGAGTTGTTGGAGAAAATGGTGGAGAAGAATGAGAATATGATGAGAATGATGACTGAACTGTGCCACAAAAATGAACTACAAACACGAATGCTGAATTCGCTGGCACAGAGAGTGGATCAATTAGAGAAAACTTTCTTATGTGATAGGTTGAAGACAAAGAAGAAGAAGAGGCACACTGCTTGATTCTTTCTGTAGCAAAAATGTCATAGTAGATTTTTTTTTTTTGGTGTTTCTGGGCCTGTTTCTTGTGGCTTTTATATTTCACCCTGTGATATTGGAATGTACTGATTGGTAAACAAAGATTTTGGAAAGTGAATTATAAAGAAATTTCCATATATTGTTAAGA</gDNA_template>
            <first_frame> A  P  V  S  S  P  W  L  F  L  K  H  E  R  N  S  S  A  I  D  S  P  E  T  C  R  N  Q  A  G  L  Q  G  C  S  D  S  G  P  F  R  *  F  G  S  R  A  V  R  F  G  L  G  D  K  E  T  *  A  G  *  V  R  F  S  V  E  D  P  E  G  I  Q  R  L  F  G  E  K  K  R  E  E  N  Q  V  D  T  K  R  G  G  R  C  *  A  E  A  F  V  *  R  N  G  G  V  D  L  *  R  *  K  G  K  V  A  G  E  *  D  A  D  V  S  A  F  Q  V  G  L  H  S  W  S  *  F  R  C  *  G  V  Q  K  G  C  D  *  K  G  H  L  F  A  R  E  S  R  L  H  C  C  C  C  K  S  N  C  S  *  R  G  E  S  I  R  *  T  L  *  T  S  Q  S  D  R  R  H  P  Q  F  N  R  K  T  G  *  R  W  K  I  D  K  S  E  *  T  L  S  S  V  R  A  E  C  G  C  R  N  S  S  S  I  K  *  *  E  N  T  H  R  G  *  T  R  C  S  T  A  E  *  E  A  W  R  I  A  G  G  E  A  G  N  G  L  S  N  A  R  M  C  G  G  K  C  G  E  R  *  S  W  G  F  D  R  S  S  *  G  C  E  *  E  *  E  *  E  *  N  K  V  T  Q  V  *  R  G  R  R  E  *  K  K  P  R  V  V  G  E  N  G  G  E  E  *  E  Y  D  E  N  D  D  *  T  V  P  Q  K  *  T  T  N  T  N  A  E  F  A  G  T  E  S  G  S  I  R  E  N  F  L  M  *  *  V  E  D  K  E  E  E  E  A  H  C  L  I  L  S  V  A  K  M  S  *  *  I  F  F  F  W  C  F  W  A  C  F  L  W  L  L  Y  F  T  L  *  Y  W  N  V  L  I  G  K  Q  R  F  W  K  V  N  Y  K  E  I  S  I  Y  C  *   </first_frame>
            <second_frame>  P  Q  S  A  R  P  G  Y  S  S  N  M  R  G  I  P  V  Q  S  I  H  Q  K  P  A  G  I  K  Q  A  S  K  V  V  Q  I  P  V  H  F  V  S  S  D  P  E  R  S  V  L  A  S  A  T  K  K  P  E  P  D  R  S  G  S  A  L  K  I  Q  K  V  F  R  G  F  L  V  R  K  S  V  K  K  I  K  L  I  R  K  E  V  E  D  V  E  R  K  L  L  C  R  E  T  A  E  L  I  C  R  D  E  R  E  R  L  R  V  N  E  T  L  M  S  L  L  F  K  L  D  S  I  R  G  V  D  S  G  V  R  E  C  R  K  A  V  I  R  K  A  I  Y  L  Q  E  K  V  D  C  I  V  A  A  A  N  Q  I  A  A  E  E  E  N  Q  S  D  E  L  S  E  P  V  N  Q  T  G  D  I  P  N  S  T  G  K  Q  D  E  D  G  K  L  T  N  Q  N  E  L  C  H  L  S  E  Q  S  V  D  V  E  T  Q  A  A  S  N  D  E  K  T  P  I  E  G  E  H  D  V  A  P  L  N  E  K  R  G  G  L  Q  E  V  K  Q  E  T  D  C  P  M  L  E  C  V  E  E  S  V  E  R  G  E  V  G  D  L  I  E  V  V  E  D  V  N  E  N  E  N  E  N  E  T  R  S  H  K  F  E  G  G  E  E  S  R  R  N  R  E  L  L  E  K  M  V  E  K  N  E  N  M  M  R  M  M  T  E  L  C  H  K  N  E  L  Q  T  R  M  L  N  S  L  A  Q  R  V  D  Q  L  E  K  T  F  L  C  D  R  L  K  T  K  K  K  K  R  H  T  A  *  F  F  L  *  Q  K  C  H  S  R  F  F  F  F  G  V  S  G  P  V  S  C  G  F  Y  I  S  P  C  D  I  G  M  Y  *  L  V  N  K  D  F  G  K  *  I  I  K  K  F  P  Y  I  V  K  </second_frame>
            <third_frame>   P  S  Q  L  A  L  A  I  P  Q  T  *  E  E  F  Q  C  N  R  F  T  R  N  L  P  E  S  S  R  P  P  R  L  F  R  F  R  S  I  S  L  V  R  I  P  S  G  P  F  W  P  R  R  Q  R  N  L  S  R  I  G  P  V  Q  R  *  R  S  R  R  Y  S  E  A  F  W  *  E  K  A  *  R  K  S  S  *  Y  E  K  R  W  K  M  L  S  G  S  F  C  V  E  K  R  R  S  *  F  V  E  M  K  G  K  G  C  G  *  M  R  R  *  C  L  C  F  S  S  W  T  P  F  V  E  L  I  P  V  L  G  S  A  E  R  L  *  L  E  R  P  S  I  C  K  R  K  S  T  A  L  L  L  L  Q  I  K  L  Q  L  K  R  R  I  N  P  M  N  S  L  N  Q  S  I  R  P  E  T  S  P  I  Q  Q  E  N  R  M  K  M  E  N  *  Q  I  R  M  N  F  V  I  C  Q  S  R  V  W  M  *  K  L  K  Q  H  Q  M  M  R  K  H  P  *  R  V  N  T  M  *  H  R  *  M  R  S  V  E  D  C  R  R  *  S  R  K  R  T  V  Q  C  S  N  V  W  R  K  V  W  R  E  V  K  L  G  I  *  S  K  *  L  R  M  *  M  R  M  R  M  R  M  K  Q  G  H  T  S  L  K  G  E  K  R  V  E  E  T  E  S  C  W  R  K  W  W  R  R  M  R  I  *  *  E  *  *  L  N  C  A  T  K  M  N  Y  K  H  E  C  *  I  R  W  H  R  E  W  I  N  *  R  K  L  S  Y  V  I  G  *  R  Q  R  R  R  R  G  T  L  L  D  S  F  C  S  K  N  V  I  V  D  F  F  F  L  V  F  L  G  L  F  L  V  A  F  I  F  H  P  V  I  L  E  C  T  D  W  *  T  K  I  L  E  S  E  L  *  R  N  F  H  I  L  L  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16639" stop="15548"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1089</number_coding_nucleotides>
                  <number_encoded_amino_acids>363</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PQSARPGYSSNMRGIPVQSIHQKPAGIKQASKVVQIPVHFVSSDPERSVLASATKKPEPDRSGSALKIQKVFRGFLVRKSVKKIKLIRKEVEDVERKLLCRETAELICRDERERLRVNETLMSLLFKLDSIRGVDSGVRECRKAVIRKAIYLQEKVDCIVAAANQIAAEEENQSDELSEPVNQTGDIPNSTGKQDEDGKLTNQNELCHLSEQSVDVETQAASNDEKTPIEGEHDVAPLNEKRGGLQEVKQETDCPMLECVEESVERGEVGDLIEVVEDVNENENENETRSHKFEGGEESRRNRELLEKMVEKNENMMRMMTELCHKNELQTRMLNSLAQRVDQLEKTFLCDRLKTKKKKRHTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="22021" PGL_stop="23158"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22021" e_stop="23158"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="22021" e_stop="23158" e_length="1138"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22021" stop="22406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22045" stop="22649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22359" stop="22916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22594" stop="23158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320939" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAAAAGAGGGAGAAAGAAAAAGAGAAGAAAAAAAAGAAAGGGATGGTTTTTGGAGAGAATTTTTTTTTTACATCTTGTGATAGAAAAGAAAAGAATTATTGAAAGAGTTTATTCATAGGAAGATTTTACAATAGTTTAAGCACACCTATATATCTATTGAAGTTGAATTAAAAACAGAAGGATTGTGAGGTTTTTGATTATCATTTGAATTCGAAGTTGTGTAGTGGAAGGTCATCCCTTTGCTCGTTTCGTCTCTAACTCGCTGCCCCGAAGAAGGTGAAATCCTTTTTTTTTTTTTCTTTTTAGATGTTGTCATTCCACCTTGCTAACTATTTTTTTTTTGTTTTGTTTTCTTGTGTGACATCGATTCGAGTCCATTTTGGATTCCATTCTTGCATTCCTCGTTGAGCCATAAAGGCTCAAAACACTTTTCCCGAGTCAGCCAACCCCCTGAAAGGATGTACAGGTCGAAAGCAAAACCATTGGAGAGCTGCTGGAAGTAGCGGATTGCAGGCATTTGGCTGCGATTTTTGTTTTGAAGTTGTGTATCTGGTTTATACACAATATATACACTGTGATACAGGTCAAAAATCCACAGGAGGCCCAAATTCAAAATCTGAATTGATGACAGGAAAATTGCGTTTCTGGAAAGGAGTTTTCAACTTCCGAAAGTTGAAAAACAGGCTTATATACAGCCTGTATACACAGATATACAGAGATGATATACTATATATATGCTCAAAAAATATGATTGGCAGGGGAACGTACACGGATGCTTGTTTTAACTAAAATTCGGGATTAGGCAATTAATACGGACGCAGGGTGCAGCCCGTATACATTAGTATACATTATCGGGCGACGATATATAATTGTTAAACAGGTTTAAAAAATGATACAGGTACAAATATGCAGAGACGATATGCGAAATATAGGGGAAATAGCTGAAAATGCGTATATAAATAAATGCAGGGCTCAAAAGGTCCAAAATGGATGCTGATATACACCGTATACAACAGTATACATCTTTTGTATACTTTATATCTCCTTTTTCAGGAAATTGGGCTAAGGCCCTTCAGTTCCCTTTTATCAACAGGCCCAATAACCATTTGTTTTTACAGGTTTTTTTTTTAAAAAAA</gDNA_template>
            <first_frame> K  K  R  G  R  K  K  K  R  R  K  K  R  K  G  W  F  L  E  R  I  F  F  L  H  L  V  I  E  K  K  R  I  I  E  R  V  Y  S  *  E  D  F  T  I  V  *  A  H  L  Y  I  Y  *  S  *  I  K  N  R  R  I  V  R  F  L  I  I  I  *  I  R  S  C  V  V  E  G  H  P  F  A  R  F  V  S  N  S  L  P  R  R  R  *  N  P  F  F  F  F  L  F  R  C  C  H  S  T  L  L  T  I  F  F  L  F  C  F  L  V  *  H  R  F  E  S  I  L  D  S  I  L  A  F  L  V  E  P  *  R  L  K  T  L  F  P  S  Q  P  T  P  *  K  D  V  Q  V  E  S  K  T  I  G  E  L  L  E  V  A  D  C  R  H  L  A  A  I  F  V  L  K  L  C  I  W  F  I  H  N  I  Y  T  V  I  Q  V  K  N  P  Q  E  A  Q  I  Q  N  L  N  *  *  Q  E  N  C  V  S  G  K  E  F  S  T  S  E  S  *  K  T  G  L  Y  T  A  C  I  H  R  Y  T  E  M  I  Y  Y  I  Y  A  Q  K  I  *  L  A  G  E  R  T  R  M  L  V  L  T  K  I  R  D  *  A  I  N  T  D  A  G  C  S  P  Y  T  L  V  Y  I  I  G  R  R  Y  I  I  V  K  Q  V  *  K  M  I  Q  V  Q  I  C  R  D  D  M  R  N  I  G  E  I  A  E  N  A  Y  I  N  K  C  R  A  Q  K  V  Q  N  G  C  *  Y  T  P  Y  T  T  V  Y  I  F  C  I  L  Y  I  S  F  F  R  K  L  G  *  G  P  S  V  P  F  Y  Q  Q  A  Q  *  P  F  V  F  T  G  F  F  F  K  K  </first_frame>
            <second_frame>  R  K  E  G  E  R  K  R  E  E  K  K  E  R  D  G  F  W  R  E  F  F  F  Y  I  L  *  *  K  R  K  E  L  L  K  E  F  I  H  R  K  I  L  Q  *  F  K  H  T  Y  I  S  I  E  V  E  L  K  T  E  G  L  *  G  F  *  L  S  F  E  F  E  V  V  *  W  K  V  I  P  L  L  V  S  S  L  T  R  C  P  E  E  G  E  I  L  F  F  F  F  F  L  D  V  V  I  P  P  C  *  L  F  F  F  C  F  V  F  L  C  D  I  D  S  S  P  F  W  I  P  F  L  H  S  S  L  S  H  K  G  S  K  H  F  S  R  V  S  Q  P  P  E  R  M  Y  R  S  K  A  K  P  L  E  S  C  W  K  *  R  I  A  G  I  W  L  R  F  L  F  *  S  C  V  S  G  L  Y  T  I  Y  T  L  *  Y  R  S  K  I  H  R  R  P  K  F  K  I  *  I  D  D  R  K  I  A  F  L  E  R  S  F  Q  L  P  K  V  E  K  Q  A  Y  I  Q  P  V  Y  T  D  I  Q  R  *  Y  T  I  Y  M  L  K  K  Y  D  W  Q  G  N  V  H  G  C  L  F  *  L  K  F  G  I  R  Q  L  I  R  T  Q  G  A  A  R  I  H  *  Y  T  L  S  G  D  D  I  *  L  L  N  R  F  K  K  *  Y  R  Y  K  Y  A  E  T  I  C  E  I  *  G  K  *  L  K  M  R  I  *  I  N  A  G  L  K  R  S  K  M  D  A  D  I  H  R  I  Q  Q  Y  T  S  F  V  Y  F  I  S  P  F  S  G  N  W  A  K  A  L  Q  F  P  F  I  N  R  P  N  N  H  L  F  L  Q  V  F  F  L  K  K </second_frame>
            <third_frame>   E  K  R  E  K  E  K  E  K  K  K  K  K  G  M  V  F  G  E  N  F  F  F  T  S  C  D  R  K  E  K  N  Y  *  K  S  L  F  I  G  R  F  Y  N  S  L  S  T  P  I  Y  L  L  K  L  N  *  K  Q  K  D  C  E  V  F  D  Y  H  L  N  S  K  L  C  S  G  R  S  S  L  C  S  F  R  L  *  L  A  A  P  K  K  V  K  S  F  F  F  F  S  F  *  M  L  S  F  H  L  A  N  Y  F  F  F  V  L  F  S  C  V  T  S  I  R  V  H  F  G  F  H  S  C  I  P  R  *  A  I  K  A  Q  N  T  F  P  E  S  A  N  P  L  K  G  C  T  G  R  K  Q  N  H  W  R  A  A  G  S  S  G  L  Q  A  F  G  C  D  F  C  F  E  V  V  Y  L  V  Y  T  Q  Y  I  H  C  D  T  G  Q  K  S  T  G  G  P  N  S  K  S  E  L  M  T  G  K  L  R  F  W  K  G  V  F  N  F  R  K  L  K  N  R  L  I  Y  S  L  Y  T  Q  I  Y  R  D  D  I  L  Y  I  C  S  K  N  M  I  G  R  G  T  Y  T  D  A  C  F  N  *  N  S  G  L  G  N  *  Y  G  R  R  V  Q  P  V  Y  I  S  I  H  Y  R  A  T  I  Y  N  C  *  T  G  L  K  N  D  T  G  T  N  M  Q  R  R  Y  A  K  Y  R  G  N  S  *  K  C  V  Y  K  *  M  Q  G  S  K  G  P  K  W  M  L  I  Y  T  V  Y  N  S  I  H  L  L  Y  T  L  Y  L  L  F  Q  E  I  G  L  R  P  F  S  S  L  L  S  T  G  P  I  T  I  C  F  Y  R  F  F  F  *  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22431" stop="22811"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIKAQNTFPESANPLKGCTGRKQNHWRAAGSSGLQAFGCDFCFEVVYLVYTQYIHCDTGQKSTGGPNSKSELMTGKLRFWKGVFNFRKLKNRLIYSLYTQIYRDDILYICSKNMIGRGTYTDACFN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="22916" PGL_stop="22359"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22916" e_stop="22359"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="22916" e_stop="22359" e_length="558"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22916" stop="22359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390285" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCATTTTTTAAACCTGTTTAACAATTATATATCGTCGCCCGATAATGTATACTAATGTATACGGGCTGCACCCTGCGTCCGTATTAATTGCCTAATCCCGAATTTTAGTTAAAACAAGCATCCGTGTACGTTCCCCTGCCAATCATATTTTTTGAGCATATATATAGTATATCATCTCTGTATATCTGTGTATACAGGCTGTATATAAGCCTGTTTTTCAACTTTCGGAAGTTGAAAACTCCTTTCCAGAAACGCAATTTTCCTGTCATCAATTCAGATTTTGAATTTGGGCCTCCTGTGGATTTTTGACCTGTATCACAGTGTATATATTGTGTATAAACCAGATACACAACTTCAAAACAAAAATCGCAGCCAAATGCCTGCAATCCGCTACTTCCAGCAGCTCTCCAATGGTTTTGCTTTCGACCTGTACATCCTTTCAGGGGGTTGGCTGACTCGGGAAAAGTGTTTTGAGCCTTTATGGCTCAACGAGGAATGCAAGAATGGAATCCAAAATGGACTCGAATCGATGTCACACAAGAAAACAAAACAAAAAA</gDNA_template>
            <first_frame> I  I  F  *  T  C  L  T  I  I  Y  R  R  P  I  M  Y  T  N  V  Y  G  L  H  P  A  S  V  L  I  A  *  S  R  I  L  V  K  T  S  I  R  V  R  S  P  A  N  H  I  F  *  A  Y  I  *  Y  I  I  S  V  Y  L  C  I  Q  A  V  Y  K  P  V  F  Q  L  S  E  V  E  N  S  F  P  E  T  Q  F  S  C  H  Q  F  R  F  *  I  W  A  S  C  G  F  L  T  C  I  T  V  Y  I  L  C  I  N  Q  I  H  N  F  K  T  K  I  A  A  K  C  L  Q  S  A  T  S  S  S  S  P  M  V  L  L  S  T  C  T  S  F  Q  G  V  G  *  L  G  K  S  V  L  S  L  Y  G  S  T  R  N  A  R  M  E  S  K  M  D  S  N  R  C  H  T  R  K  Q  N  K  K </first_frame>
            <second_frame>  S  F  F  K  P  V  *  Q  L  Y  I  V  A  R  *  C  I  L  M  Y  T  G  C  T  L  R  P  Y  *  L  P  N  P  E  F  *  L  K  Q  A  S  V  Y  V  P  L  P  I  I  F  F  E  H  I  Y  S  I  S  S  L  Y  I  C  V  Y  R  L  Y  I  S  L  F  F  N  F  R  K  L  K  T  P  F  Q  K  R  N  F  P  V  I  N  S  D  F  E  F  G  P  P  V  D  F  *  P  V  S  Q  C  I  Y  C  V  *  T  R  Y  T  T  S  K  Q  K  S  Q  P  N  A  C  N  P  L  L  P  A  A  L  Q  W  F  C  F  R  P  V  H  P  F  R  G  L  A  D  S  G  K  V  F  *  A  F  M  A  Q  R  G  M  Q  E  W  N  P  K  W  T  R  I  D  V  T  Q  E  N  K  T  K   </second_frame>
            <third_frame>   H  F  L  N  L  F  N  N  Y  I  S  S  P  D  N  V  Y  *  C  I  R  A  A  P  C  V  R  I  N  C  L  I  P  N  F  S  *  N  K  H  P  C  T  F  P  C  Q  S  Y  F  L  S  I  Y  I  V  Y  H  L  C  I  S  V  Y  T  G  C  I  *  A  C  F  S  T  F  G  S  *  K  L  L  S  R  N  A  I  F  L  S  S  I  Q  I  L  N  L  G  L  L  W  I  F  D  L  Y  H  S  V  Y  I  V  Y  K  P  D  T  Q  L  Q  N  K  N  R  S  Q  M  P  A  I  R  Y  F  Q  Q  L  S  N  G  F  A  F  D  L  Y  I  L  S  G  G  W  L  T  R  E  K  C  F  E  P  L  W  L  N  E  E  C  K  N  G  I  Q  N  G  L  E  S  M  S  H  K  K  T  K  Q  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22680" stop="22360"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLLSRNAIFLSSIQILNLGLLWIFDLYHSVYIVYKPDTQLQNKNRSQMPAIRYFQQLSNGFAFDLYILSGGWLTREKCFEPLWLNEECKNGIQNGLESMSHKKTKQK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="23174" PGL_stop="23796"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23174" e_stop="23796"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="23174" e_stop="23796" e_length="623"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23174" stop="23796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356241" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAATAGATTATGACAGGTGGGCCAAAGCCCAATTGGATGGATTTGGGCAATCAAACCCAAGTTCAAATATTTTTCTCTCTTTATTTATTATTTGTTTGAATTAATTAGTGTTTTGGTAGAATTTTAATAATCTCCTAAAGAGTAGCCATTTTTCATTATTTTAAATTTTACTATTTTATTCACTTTTATCACCATTTAGTTTTCCTTAAATTAATTCCTCTAAACATTTCCCTTTAGAAAAAAAAAAGTAAAAAGAATGAAATACAAAATATCAAAATGAATTTTCTCTTTTACTTAGTTAAAAATTTTTATTTTAAAAGTCATTTAGTCAAATCGCCGGTCAACCGCAAGTTAGCGGGCATCCCGAGGGCCTAACACCTTCTCGAGATGTACATTGAAGTTCGAACCCTTTTCAATTGATTTTTAATCTGTTTTTTAAATCTTTTGAAGTTTTTCTTGATTTTATCAAAAATCAAGTGGCGACTCCAATTTTGAAGGTCGGTTTTTCTTAAACAATAAGATTAATTGATTTTTCGAAACCTAGTCAATTTTTTCTCATTTCTCCCATTAAACATAAACAGTAGTATTTTTTTAAGTGAAACATCAAGTATTACTTTGCTCA</gDNA_template>
            <first_frame> *  I  D  Y  D  R  W  A  K  A  Q  L  D  G  F  G  Q  S  N  P  S  S  N  I  F  L  S  L  F  I  I  C  L  N  *  L  V  F  W  *  N  F  N  N  L  L  K  S  S  H  F  S  L  F  *  I  L  L  F  Y  S  L  L  S  P  F  S  F  P  *  I  N  S  S  K  H  F  P  L  E  K  K  K  *  K  E  *  N  T  K  Y  Q  N  E  F  S  L  L  L  S  *  K  F  L  F  *  K  S  F  S  Q  I  A  G  Q  P  Q  V  S  G  H  P  E  G  L  T  P  S  R  D  V  H  *  S  S  N  P  F  Q  L  I  F  N  L  F  F  K  S  F  E  V  F  L  D  F  I  K  N  Q  V  A  T  P  I  L  K  V  G  F  S  *  T  I  R  L  I  D  F  S  K  P  S  Q  F  F  L  I  S  P  I  K  H  K  Q  *  Y  F  F  K  *  N  I  K  Y  Y  F  A   </first_frame>
            <second_frame>  K  *  I  M  T  G  G  P  K  P  N  W  M  D  L  G  N  Q  T  Q  V  Q  I  F  F  S  L  Y  L  L  F  V  *  I  N  *  C  F  G  R  I  L  I  I  S  *  R  V  A  I  F  H  Y  F  K  F  Y  Y  F  I  H  F  Y  H  H  L  V  F  L  K  L  I  P  L  N  I  S  L  *  K  K  K  S  K  K  N  E  I  Q  N  I  K  M  N  F  L  F  Y  L  V  K  N  F  Y  F  K  S  H  L  V  K  S  P  V  N  R  K  L  A  G  I  P  R  A  *  H  L  L  E  M  Y  I  E  V  R  T  L  F  N  *  F  L  I  C  F  L  N  L  L  K  F  F  L  I  L  S  K  I  K  W  R  L  Q  F  *  R  S  V  F  L  K  Q  *  D  *  L  I  F  R  N  L  V  N  F  F  S  F  L  P  L  N  I  N  S  S  I  F  L  S  E  T  S  S  I  T  L  L  </second_frame>
            <third_frame>   N  R  L  *  Q  V  G  Q  S  P  I  G  W  I  W  A  I  K  P  K  F  K  Y  F  S  L  F  I  Y  Y  L  F  E  L  I  S  V  L  V  E  F  *  *  S  P  K  E  *  P  F  F  I  I  L  N  F  T  I  L  F  T  F  I  T  I  *  F  S  L  N  *  F  L  *  T  F  P  F  R  K  K  K  V  K  R  M  K  Y  K  I  S  K  *  I  F  S  F  T  *  L  K  I  F  I  L  K  V  I  *  S  N  R  R  S  T  A  S  *  R  A  S  R  G  P  N  T  F  S  R  C  T  L  K  F  E  P  F  S  I  D  F  *  S  V  F  *  I  F  *  S  F  S  *  F  Y  Q  K  S  S  G  D  S  N  F  E  G  R  F  F  L  N  N  K  I  N  *  F  F  E  T  *  S  I  F  S  H  F  S  H  *  T  *  T  V  V  F  F  *  V  K  H  Q  V  L  L  C  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0222J18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="40371" PGL_stop="29882"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40371" e_stop="40262"/>
            <exon e_start="40172" e_stop="40121"/>
            <exon e_start="38588" e_stop="38515"/>
            <exon e_start="38404" e_stop="38341"/>
            <exon e_start="37584" e_stop="37472"/>
            <exon e_start="37374" e_stop="37327"/>
            <exon e_start="37075" e_stop="37004"/>
            <exon e_start="36860" e_stop="36771"/>
            <exon e_start="35724" e_stop="35551"/>
            <exon e_start="35198" e_stop="35115"/>
            <exon e_start="34324" e_stop="34269"/>
            <exon e_start="33930" e_stop="33800"/>
            <exon e_start="33731" e_stop="33639"/>
            <exon e_start="33346" e_stop="33282"/>
            <exon e_start="33050" e_stop="32907"/>
            <exon e_start="32822" e_stop="32779"/>
            <exon e_start="31921" e_stop="31838"/>
            <exon e_start="31737" e_stop="31664"/>
            <exon e_start="31574" e_stop="31462"/>
            <exon e_start="31372" e_stop="31277"/>
            <exon e_start="30318" e_stop="29882"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.210" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.709" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.818" acc_prob="0.694" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.785" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40371" e_stop="40262" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.994">
            <gDNA_intron_boundary i_start="40261" i_stop="40173" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40172" e_stop="40121" e_length="52"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.951">
            <gDNA_intron_boundary i_start="40120" i_stop="38589" i_length="1532"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38588" e_stop="38515" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.985">
            <gDNA_intron_boundary i_start="38514" i_stop="38405" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38404" e_stop="38341" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38340" i_stop="37585" i_length="756"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="37584" e_stop="37472" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.993">
            <gDNA_intron_boundary i_start="37471" i_stop="37375" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="37374" e_stop="37327" e_length="48"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="37326" i_stop="37076" i_length="251"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="37075" e_stop="37004" e_length="72"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="37003" i_stop="36861" i_length="143"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="36860" e_stop="36771" e_length="90"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="36770" i_stop="35725" i_length="1046"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="35724" e_stop="35551" e_length="174"/>
          </exon>
          <intron i_serial="9" don_prob="0.210" acc_prob="1.000">
            <gDNA_intron_boundary i_start="35550" i_stop="35199" i_length="352"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="35198" e_stop="35115" e_length="84"/>
          </exon>
          <intron i_serial="10" don_prob="0.922" acc_prob="0.709">
            <gDNA_intron_boundary i_start="35114" i_stop="34325" i_length="790"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="34324" e_stop="34269" e_length="56"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34268" i_stop="33931" i_length="338"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="33930" e_stop="33800" e_length="131"/>
          </exon>
          <intron i_serial="12" don_prob="0.818" acc_prob="0.694">
            <gDNA_intron_boundary i_start="33799" i_stop="33732" i_length="68"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="33731" e_stop="33639" e_length="93"/>
          </exon>
          <intron i_serial="13" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33638" i_stop="33347" i_length="292"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="33346" e_stop="33282" e_length="65"/>
          </exon>
          <intron i_serial="14" don_prob="0.983" acc_prob="0.997">
            <gDNA_intron_boundary i_start="33281" i_stop="33051" i_length="231"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="33050" e_stop="32907" e_length="144"/>
          </exon>
          <intron i_serial="15" don_prob="0.920" acc_prob="0.996">
            <gDNA_intron_boundary i_start="32906" i_stop="32823" i_length="84"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="32822" e_stop="32779" e_length="44"/>
          </exon>
          <intron i_serial="16" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32778" i_stop="31922" i_length="857"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="31921" e_stop="31838" e_length="84"/>
          </exon>
          <intron i_serial="17" don_prob="0.925" acc_prob="0.979">
            <gDNA_intron_boundary i_start="31837" i_stop="31738" i_length="100"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="31737" e_stop="31664" e_length="74"/>
          </exon>
          <intron i_serial="18" don_prob="0.924" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31663" i_stop="31575" i_length="89"/>
          </intron>
          <exon e_serial="19" e_score="1.000">
            <gDNA_exon_boundary e_start="31574" e_stop="31462" e_length="113"/>
          </exon>
          <intron i_serial="19" don_prob="0.992" acc_prob="0.961">
            <gDNA_intron_boundary i_start="31461" i_stop="31373" i_length="89"/>
          </intron>
          <exon e_serial="20" e_score="1.000">
            <gDNA_exon_boundary e_start="31372" e_stop="31277" e_length="96"/>
          </exon>
          <intron i_serial="20" don_prob="0.940" acc_prob="0.785">
            <gDNA_intron_boundary i_start="31276" i_stop="30319" i_length="958"/>
          </intron>
          <exon e_serial="21" e_score="1.000">
            <gDNA_exon_boundary e_start="30318" e_stop="29882" e_length="437"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40371" stop="40262"/>
              <exon start="40172" stop="40121"/>
              <exon start="38588" stop="38515"/>
              <exon start="38404" stop="38341"/>
              <exon start="37584" stop="37472"/>
              <exon start="37374" stop="37327"/>
              <exon start="37075" stop="37004"/>
              <exon start="36860" stop="36771"/>
              <exon start="35724" stop="35551"/>
              <exon start="35198" stop="35115"/>
              <exon start="34324" stop="34269"/>
              <exon start="33930" stop="33800"/>
              <exon start="33731" stop="33639"/>
              <exon start="33346" stop="33282"/>
              <exon start="33050" stop="32907"/>
              <exon start="32822" stop="32779"/>
              <exon start="31921" stop="31838"/>
              <exon start="31737" stop="31664"/>
              <exon start="31574" stop="31462"/>
              <exon start="31372" stop="31277"/>
              <exon start="30318" stop="29907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40334" stop="40262"/>
              <exon start="40172" stop="40121"/>
              <exon start="38588" stop="38515"/>
              <exon start="38404" stop="38341"/>
              <exon start="37584" stop="37472"/>
              <exon start="37374" stop="37327"/>
              <exon start="37075" stop="37004"/>
              <exon start="36860" stop="36771"/>
              <exon start="35724" stop="35551"/>
              <exon start="35198" stop="35115"/>
              <exon start="34324" stop="34269"/>
              <exon start="33930" stop="33800"/>
              <exon start="33731" stop="33639"/>
              <exon start="33346" stop="33282"/>
              <exon start="33050" stop="32907"/>
              <exon start="32822" stop="32779"/>
              <exon start="31921" stop="31838"/>
              <exon start="31737" stop="31664"/>
              <exon start="31574" stop="31462"/>
              <exon start="31372" stop="31277"/>
              <exon start="30318" stop="29907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40318" stop="40262"/>
              <exon start="40172" stop="40121"/>
              <exon start="38588" stop="38515"/>
              <exon start="38404" stop="38341"/>
              <exon start="37584" stop="37472"/>
              <exon start="37374" stop="37327"/>
              <exon start="37075" stop="37004"/>
              <exon start="36860" stop="36771"/>
              <exon start="35724" stop="35624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40318" stop="40262"/>
              <exon start="40172" stop="40121"/>
              <exon start="38588" stop="38515"/>
              <exon start="38404" stop="38341"/>
              <exon start="37584" stop="37508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281372" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40314" stop="40262"/>
              <exon start="40172" stop="40121"/>
              <exon start="38588" stop="38515"/>
              <exon start="38404" stop="38341"/>
              <exon start="37584" stop="37472"/>
              <exon start="37374" stop="37327"/>
              <exon start="37075" stop="37004"/>
              <exon start="36860" stop="36771"/>
              <exon start="35724" stop="35551"/>
              <exon start="35198" stop="35122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40310" stop="40262"/>
              <exon start="40172" stop="40121"/>
              <exon start="38588" stop="38515"/>
              <exon start="38404" stop="38341"/>
              <exon start="37584" stop="37472"/>
              <exon start="37374" stop="37327"/>
              <exon start="37075" stop="37004"/>
              <exon start="36860" stop="36771"/>
              <exon start="35724" stop="35629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40310" stop="40262"/>
              <exon start="40172" stop="40121"/>
              <exon start="38588" stop="38515"/>
              <exon start="38404" stop="38341"/>
              <exon start="37584" stop="37472"/>
              <exon start="37374" stop="37327"/>
              <exon start="37075" stop="37004"/>
              <exon start="36860" stop="36809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40310" stop="40262"/>
              <exon start="40172" stop="40121"/>
              <exon start="38588" stop="38515"/>
              <exon start="38404" stop="38341"/>
              <exon start="37584" stop="37472"/>
              <exon start="37374" stop="37327"/>
              <exon start="37075" stop="37020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40303" stop="40262"/>
              <exon start="40172" stop="40121"/>
              <exon start="38588" stop="38515"/>
              <exon start="38404" stop="38341"/>
              <exon start="37584" stop="37472"/>
              <exon start="37374" stop="37327"/>
              <exon start="37075" stop="37004"/>
              <exon start="36860" stop="36771"/>
              <exon start="35724" stop="35606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40303" stop="40262"/>
              <exon start="40172" stop="40121"/>
              <exon start="38588" stop="38515"/>
              <exon start="38404" stop="38341"/>
              <exon start="37584" stop="37472"/>
              <exon start="37374" stop="37327"/>
              <exon start="37075" stop="37004"/>
              <exon start="36860" stop="36771"/>
              <exon start="35724" stop="35644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40300" stop="40262"/>
              <exon start="40172" stop="40121"/>
              <exon start="38588" stop="38515"/>
              <exon start="38404" stop="38341"/>
              <exon start="37584" stop="37472"/>
              <exon start="37374" stop="37327"/>
              <exon start="37075" stop="37004"/>
              <exon start="36860" stop="36854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40272" stop="40262"/>
              <exon start="40172" stop="40121"/>
              <exon start="38588" stop="38515"/>
              <exon start="38404" stop="38341"/>
              <exon start="37584" stop="37472"/>
              <exon start="37374" stop="37327"/>
              <exon start="37075" stop="37004"/>
              <exon start="36860" stop="36810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37060" stop="37004"/>
              <exon start="36860" stop="36771"/>
              <exon start="35724" stop="35683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35572" stop="35551"/>
              <exon start="35198" stop="35115"/>
              <exon start="34324" stop="34269"/>
              <exon start="33930" stop="33800"/>
              <exon start="33731" stop="33643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35188" stop="35115"/>
              <exon start="34324" stop="34269"/>
              <exon start="33930" stop="33800"/>
              <exon start="33731" stop="33639"/>
              <exon start="33346" stop="33282"/>
              <exon start="33050" stop="33003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33930" stop="33800"/>
              <exon start="33731" stop="33639"/>
              <exon start="33346" stop="33282"/>
              <exon start="33050" stop="32907"/>
              <exon start="32822" stop="32779"/>
              <exon start="31921" stop="31850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33699" stop="33639"/>
              <exon start="33346" stop="33282"/>
              <exon start="33050" stop="32907"/>
              <exon start="32822" stop="32779"/>
              <exon start="31921" stop="31838"/>
              <exon start="31737" stop="31664"/>
              <exon start="31574" stop="31462"/>
              <exon start="31372" stop="31277"/>
              <exon start="30318" stop="30127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33346" stop="33282"/>
              <exon start="33050" stop="32907"/>
              <exon start="32822" stop="32779"/>
              <exon start="31921" stop="31838"/>
              <exon start="31737" stop="31664"/>
              <exon start="31574" stop="31485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31921" stop="31838"/>
              <exon start="31737" stop="31664"/>
              <exon start="31574" stop="31462"/>
              <exon start="31372" stop="31277"/>
              <exon start="30318" stop="29907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31845" stop="31838"/>
              <exon start="31737" stop="31664"/>
              <exon start="31574" stop="31462"/>
              <exon start="31372" stop="31277"/>
              <exon start="30318" stop="30143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281582" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31534" stop="31462"/>
              <exon start="31372" stop="31277"/>
              <exon start="30318" stop="29915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31534" stop="31462"/>
              <exon start="31372" stop="31277"/>
              <exon start="30318" stop="29915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30284" stop="29882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30284" stop="29882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30283" stop="29882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289940" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTCTATAAATCTTTTTTTTCCCCTTCTCTCTCTTTTTGTGTTTGTTCAGACTTCGGACAAAGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAG : CACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATG : ATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAG : GTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAG : GTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCG : GGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAG : AACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAG : ATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAG : GTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCGTTATCTGTTTGCACGTTGCCAGGACAGGTGACTTCAGACCGTTTAGGCCCAGGGAAGATGGAGCTTGGTCTTGGAATA : CATGGGGAACCAGGAGCTGCTGTAGCTGACCTTCAACCAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTTGTCACCG : GAGACCAACTACGTTCCAATCACGCGTGGGAGTAGAGTCGTGCTCCTGATTAATGG : ATTAGGAGCAACACCATTGATGGAATTGATGATTATAGCTGGCAAGGCTGTCCCAGAATTGCAGCTTGAACATGGTCTAGCTGTTGATAGAGTCTATACAGGGTCATTTATGACGTCACTTGATATGGCAG : GCTTTTCAATTTCGGTAATGAAGGCTGATCAAGCAATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTTGGTGCTGAAG : GCAACCGGCCTCCTGCAAAGATTCCTGTTCCACTTCCGCCATCACATTCTATCAAGATTGAAAAG : ACATTGAGTCGGCCTGAAAAACTGAGCCCTCAGGGTCATATCCTTGAGACAGCTATTGAAGCAGCAGCTACTGAAGTTGTAAATCTCAGGGATAATTTGAATGAGTGGGACAATAAAGTTGGTGATGGCGATTGTGGTTCAACT : ATGTTCAGAGGTGCTGTGGCTATACTTGAAGACATGAAGAAGTA : CTATCCGTTGAATGACCCTGCAGAAACAGTCAATGAAATTGGAGCCTCCATTGGAAGAGTAATGGGGGGAACTAGCGGTATCTT : ATACAGTATATTCTGTAAGGCAGCATATGCGAAGTTGAAAGAAAATGCTGAGTCGGTTGTCACAGCTATTCACT : GGGCTGATGCACTTGAAGCTGCTATCGCTGCTGTTAGTAAATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAG : AGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAG : GCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTACTTTTAGCATCTCTTCGCGCACCTTTACAACGC</gDNA_template>
            <first_frame> P  L  *  I  F  F  F  P  F  S  L  F  L  C  L  F  R  L  R  T  K  H  S  T  I  E  V  Y  S  P  H  T  Y  K  A  L  S :   T  I  I  R  W  I  F  R  A  K  N  S  S  T  T  P  M  :  M  L  *  Q  S  S  L  R  D  L  L  R  I  I  Q  G  C  S  I  W  M  V  S  Q  R :   L  R  S  S  C  V  L  M  F  L  V  Q  N  M  T  K  L  P  S  Y  Q  :  V  V  E  V  A  M  S  L  L  M  L  D  L  L  E  K  G  C  *  L  Q  L  S  V  G  T  F  L  P  L  Q  M  L  I  Q  F  L  R :   A  Y  E  L  S  Q  V  P  W  G  A  F  L  L  S  R :   T  I  L  V  I  D  *  I  L  V  W  L  L  N  K  Q  N  L  K  V  I  K  S  R :   W  *  S  S  V  M  T  V  L  Y  H  L  Q  E  A  L  L  A  E  E  G  W  Q  G  R  F  L  F  T  R :   L  P  E  L  Q  Q  L  V  V  F  P  L  L  T  L  Q  L  K  P  N  V  H  Q  K  W  L  G  Q  W  A  L  R  Y  L  F  A  R  C  Q  D  R  *  L  Q  T  V  *  A  Q  G  R  W  S  L  V  L  E  Y :   M  G  N  Q  E  L  L  *  L  T  F  N  Q  *  M  W  W  F  L  M  F  *  R  R  F  C  H  R :   R  P  T  T  F  Q  S  R  V  G  V  E  S  C  S  *  L  M   : D  *  E  Q  H  H  *  W  N  *  *  L  *  L  A  R  L  S  Q  N  C  S  L  N  M  V  *  L  L  I  E  S  I  Q  G  H  L  *  R  H  L  I  W  Q  :  A  F  Q  F  R  *  *  R  L  I  K  Q  F  *  I  V  *  M  L  Q  L  K  L  Q  I  G  L  L  V  L  K  :  A  T  G  L  L  Q  R  F  L  F  H  F  R  H  H  I  L  S  R  L  K  R :   H  *  V  G  L  K  N  *  A  L  R  V  I  S  L  R  Q  L  L  K  Q  Q  L  L  K  L  *  I  S  G  I  I  *  M  S  G  T  I  K  L  V  M  A  I  V  V  Q  L :   C  S  E  V  L  W  L  Y  L  K  T  *  R  S   : T  I  R  *  M  T  L  Q  K  Q  S  M  K  L  E  P  P  L  E  E  *  W  G  E  L  A  V  S   : Y  T  V  Y  S  V  R  Q  H  M  R  S  *  K  K  M  L  S  R  L  S  Q  L  F  T  :  G  L  M  H  L  K  L  L  S  L  L  L  V  N  M  E  E  L  V  L  V  I  V  P  F  *  M  L  L  Y  Q  H  C  Q  L  L  K  R :   G  *  M  L  G  T  T  L  R  M  L  S  L  F  L  L  R  Q  H  L  L  E  P  S  Q  P  S  T  C  R  R  R :   L  A  V  Q  P  M  Y  P  E  I  F  L  H  Q  F  L  T  Q  V  P  W  L  Q  L  R  G  T  E  Q  L  R  *  L  *  R  R  S  I  I  Q  H  K  H  I  *  S  A  I  P  I  T  S  C  R  N  V  F  S  F  S  R  K  K  L  T  Q  Q  F  F  A  R  K  P  Y  E  E  L  A  F  R  L  C  S  P  A  *  S  R  E  S  V  E  N  V  C  Y  S  P  F  I  Q  C  S  K  *  G  K  K  Q  T  L  P  C  R  M  V  I  C  E  G  G  C  K  L  Y  C  N  N  G  F  S  Y  S  A  T  F  S  I  S  S  R  T  F  T  T  </first_frame>
            <second_frame>  L  Y  K  S  F  F  S  P  S  L  S  F  C  V  C  S  D  F  G  Q  S  I  Q  Q  L  K  S  T  L  P  T  P  T  K  P  S   : A  Q  L  S  D  G  F  S  E  Q  K  T  H  Q  R  P  Q  * :   C  C  D  R  V  H  *  G  T  Y  *  E  L  S  R  V  A  V  S  G  W  F  P  R   : G  *  G  R  L  A  C  *  C  F  W  C  K  I  *  Q  S  C  H  H  I  R :   W  W  K  W  P  *  A  C  S  C  W  I  C  W  R  R  D  A  D  C  S  Y  L  W  G  R  F  C  L  S  K  C  *  F  N  S  C   : G  H  T  S  C  H  R  S  H  G  V  P  S  Y  C  Q   : E  L  Y  W  *  S  T  E  F  W  F  G  C  *  T  S  K  I  *  R  L  *  S  R   : D  G  N  R  R  *  *  L  C  F  T  T  S  K  R  H  C  W  P  K  R  V  G  R  D  A  S  C  S  Q   : G  C  R  S  C  S  S  L  W  S  S  P  C  *  R  C  S  *  S  Q  T  C  I  R  N  G  W  D  N  G  R  C  V  I  C  L  H  V  A  R  T  G  D  F  R  P  F  R  P  R  E  D  G  A  W  S  W  N   : T  W  G  T  R  S  C  C  S  *  P  S  T  S  R  C  G  G  F  S  C  S  E  G  D  F  V  T   : G  D  Q  L  R  S  N  H  A  W  E  *  S  R  A  P  D  *  W  :  I  R  S  N  T  I  D  G  I  D  D  Y  S  W  Q  G  C  P  R  I  A  A  *  T  W  S  S  C  *  *  S  L  Y  R  V  I  Y  D  V  T  *  Y  G  R :   L  F  N  F  G  N  E  G  *  S  S  N  F  R  S  F  R  C  S  N  *  S  S  K  L  A  C  W  C  *  R :   Q  P  A  S  C  K  D  S  C  S  T  S  A  I  T  F  Y  Q  D  *  K   : D  I  E  S  A  *  K  T  E  P  S  G  S  Y  P  *  D  S  Y  *  S  S  S  Y  *  S  C  K  S  Q  G  *  F  E  *  V  G  Q  *  S  W  *  W  R  L  W  F  N   : Y  V  Q  R  C  C  G  Y  T  *  R  H  E  E  V  :  L  S  V  E  *  P  C  R  N  S  Q  *  N  W  S  L  H  W  K  S  N  G  G  N  *  R  Y  L  :  I  Q  Y  I  L  *  G  S  I  C  E  V  E  R  K  C  *  V  G  C  H  S  Y  S  L :   G  *  C  T  *  S  C  Y  R  C  C  *  *  I  W  R  S  *  C  W  L  S  Y  P  F  R  C  S  Y  T  S  I  V  S  S  *  R   : E  V  E  C  W  G  R  P  C  G  C  F  H  Y  F  C  *  G  S  I  C  W  S  R  V  N  Q  A  H  A  G  A   : G  W  P  F  N  L  C  T  R  R  Y  S  C  I  S  S  *  P  R  C  H  G  C  S  C  V  V  Q  S  S  C  V  S  C  E  G  E  V  *  Y  S  I  S  I  F  N  R  P  F  L  L  L  P  A  G  M  F  S  L  S  R  G  R  N  *  P  N  N  F  L  L  V  N  L  M  R  S  *  L  S  A  Y  A  V  L  H  K  A  E  R  V  *  K  M  Y  V  T  V  L  L  Y  S  V  L  S  E  G  K  N  K  H  C  H  V  E  W  *  S  V  K  V  V  V  N  F  I  V  T  M  D  F  L  I  L  L  L  L  A  S  L  R  A  P  L  Q  R </second_frame>
            <third_frame>   S  I  N  L  F  F  P  L  L  S  L  F  V  F  V  Q  T  S  D  K  A  F  N  N  *  S  L  L  S  P  H  L  Q  S  P  Q  :  H  N  Y  P  M  D  F  Q  S  K  K  L  I  N  D  P  N   : D  V  V  T  E  F  I  E  G  L  I  E  N  Y  P  G  L  Q  Y  L  D  G  F  P  E  :  V  K  V  V  L  R  A  D  V  S  G  A  K  Y  D  K  V  A  I  I  S   : G  G  G  S  G  H  E  P  A  H  A  G  F  V  G  E  G  M  L  T  A  A  I  C  G  D  V  F  A  S  P  N  V  D  S  I  L  A  :  G  I  R  A  V  T  G  P  M  G  C  L  L  I  V  K  :  N  Y  T  G  D  R  L  N  F  G  L  A  A  E  Q  A  K  S  E  G  Y  K  V  E  :  M  V  I  V  G  D  D  C  A  L  P  P  P  R  G  I  A  G  R  R  G  L  A  G  T  L  L  V  H  K  :  V  A  G  A  A  A  A  C  G  L  P  L  A  D  V  A  A  E  A  K  R  A  S  E  M  V  G  T  M  G  V  A  L  S  V  C  T  L  P  G  Q  V  T  S  D  R  L  G  P  G  K  M  E  L  G  L  G  I  :  H  G  E  P  G  A  A  V  A  D  L  Q  P  V  D  V  V  V  S  H  V  L  K  E  I  L  S  P  :  E  T  N  Y  V  P  I  T  R  G  S  R  V  V  L  L  I  N  G :   L  G  A  T  P  L  M  E  L  M  I  I  A  G  K  A  V  P  E  L  Q  L  E  H  G  L  A  V  D  R  V  Y  T  G  S  F  M  T  S  L  D  M  A   : G  F  S  I  S  V  M  K  A  D  Q  A  I  L  D  R  L  D  A  P  T  K  A  P  N  W  P  V  G  A  E   : G  N  R  P  P  A  K  I  P  V  P  L  P  P  S  H  S  I  K  I  E  K  :  T  L  S  R  P  E  K  L  S  P  Q  G  H  I  L  E  T  A  I  E  A  A  A  T  E  V  V  N  L  R  D  N  L  N  E  W  D  N  K  V  G  D  G  D  C  G  S  T  :  M  F  R  G  A  V  A  I  L  E  D  M  K  K  Y :   Y  P  L  N  D  P  A  E  T  V  N  E  I  G  A  S  I  G  R  V  M  G  G  T  S  G  I  L :   Y  S  I  F  C  K  A  A  Y  A  K  L  K  E  N  A  E  S  V  V  T  A  I  H   : W  A  D  A  L  E  A  A  I  A  A  V  S  K  Y  G  G  A  S  A  G  Y  R  T  L  L  D  A  L  I  P  A  L  S  A  L  K  E  :  R  L  N  A  G  D  D  P  A  D  A  F  I  I  S  A  E  A  A  S  A  G  A  E  S  T  K  H  M  Q  A  Q  :  A  G  R  S  T  Y  V  P  G  D  I  L  A  S  V  P  D  P  G  A  M  A  A  A  A  W  Y  R  A  A  A  L  A  V  K  E  K  Y  N  T  A  *  A  Y  L  I  G  H  S  Y  Y  F  L  Q  E  C  F  L  F  L  E  E  E  I  N  P  T  I  F  C  S  *  T  L  *  G  V  S  F  P  L  M  Q  S  C  I  K  P  R  E  C  R  K  C  M  L  Q  S  F  Y  T  V  F  *  V  R  E  K  T  N  T  A  M  *  N  G  N  L  *  R  W  L  *  T  L  L  *  Q  W  I  F  L  F  C  Y  F  *  H  L  F  A  H  L  Y  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40294" stop="40262"/>
                    <exon start="40172" stop="40121"/>
                    <exon start="38588" stop="38515"/>
                    <exon start="38404" stop="38341"/>
                    <exon start="37584" stop="37472"/>
                    <exon start="37374" stop="37327"/>
                    <exon start="37075" stop="37004"/>
                    <exon start="36860" stop="36771"/>
                    <exon start="35724" stop="35551"/>
                    <exon start="35198" stop="35115"/>
                    <exon start="34324" stop="34269"/>
                    <exon start="33930" stop="33800"/>
                    <exon start="33731" stop="33639"/>
                    <exon start="33346" stop="33282"/>
                    <exon start="33050" stop="32907"/>
                    <exon start="32822" stop="32779"/>
                    <exon start="31921" stop="31838"/>
                    <exon start="31737" stop="31664"/>
                    <exon start="31574" stop="31462"/>
                    <exon start="31372" stop="31277"/>
                    <exon start="30318" stop="30193"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1827</number_coding_nucleotides>
                  <number_encoded_amino_acids>609</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLSPHLQSPQHNYPMDFQSKKLINDPNDVVTEFIEGLIENYPGLQYLDGFPEVKVVLRADVSGAKYDKVAIISGGGSGHEPAHAGFVGEGMLTAAICGDVFASPNVDSILAGIRAVTGPMGCLLIVKNYTGDRLNFGLAAEQAKSEGYKVEMVIVGDDCALPPPRGIAGRRGLAGTLLVHKVAGAAAACGLPLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLKEILSPETNYVPITRGSRVVLLINGLGATPLMELMIIAGKAVPELQLEHGLAVDRVYTGSFMTSLDMAGFSISVMKADQAILDRLDAPTKAPNWPVGAEGNRPPAKIPVPLPPSHSIKIEKTLSRPEKLSPQGHILETAIEAAATEVVNLRDNLNEWDNKVGDGDCGSTMFRGAVAILEDMKKYYPLNDPAETVNEIGASIGRVMGGTSGILYSIFCKAAYAKLKENAESVVTAIHWADALEAAIAAVSKYGGASAGYRTLLDALIPALSALKERLNAGDDPADAFIISAEAASAGAESTKHMQAQAGRSTYVPGDILASVPDPGAMAAAAWYRAAALAVKEKYNTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="32546" e_stop="32133"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="32546" e_stop="32133" e_length="414"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32546" stop="32133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32544" stop="32133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230255" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGAGCGGGTCACAGACGGATTTCTCAGTTGTCAAAAAAAATAATTATTCACTAACAGACAATATGTGTCTTTGTTTGTTTTCCCTCTTTCCTGCTTGCACCGTCTGTGGTGTGGTTATTTCAGAGTGTTCTGCTTGTACACATCTGCTTGCAGCATTGTTTGCTCTTGGGAAATCCCTGTAATTAATTGTTGGGTATAGATAGGTTTCATTTTTTAAACAGGGGAGGTAGAAGTCTCTTCATGAGTTAAAACACGAGGTTTTGTGAAAGACAGCTTGAGACGGCAGAAGTTGTGTTTAATCTCCTTTGTAGTCAACTTAATGATATGATATGAAAAATCAGCTGCTATTGCATGTTTTCATTTAGTTATTTTTATGT</gDNA_template>
            <first_frame> I  I  H  R  V  *  K  A  V  I  G  P  K  S  G  S  Q  T  D  F  S  V  V  K  K  N  N  Y  S  L  T  D  N  M  C  L  C  L  F  S  L  F  P  A  C  T  V  C  G  V  V  I  S  E  C  S  A  C  T  H  L  L  A  A  L  F  A  L  G  K  S  L  *  L  I  V  G  Y  R  *  V  S  F  F  K  Q  G  R  *  K  S  L  H  E  L  K  H  E  V  L  *  K  T  A  *  D  G  R  S  C  V  *  S  P  L  *  S  T  *  *  Y  D  M  K  N  Q  L  L  L  H  V  F  I  *  L  F  L  C </first_frame>
            <second_frame>  L  S  T  E  F  R  R  L  *  L  V  Q  R  A  G  H  R  R  I  S  Q  L  S  K  K  I  I  I  H  *  Q  T  I  C  V  F  V  C  F  P  S  F  L  L  A  P  S  V  V  W  L  F  Q  S  V  L  L  V  H  I  C  L  Q  H  C  L  L  L  G  N  P  C  N  *  L  L  G  I  D  R  F  H  F  L  N  R  G  G  R  S  L  F  M  S  *  N  T  R  F  C  E  R  Q  L  E  T  A  E  V  V  F  N  L  L  C  S  Q  L  N  D  M  I  *  K  I  S  C  Y  C  M  F  S  F  S  Y  F  Y   </second_frame>
            <third_frame>   Y  P  P  S  L  E  G  C  D  W  S  K  E  R  V  T  D  G  F  L  S  C  Q  K  K  *  L  F  T  N  R  Q  Y  V  S  L  F  V  F  P  L  S  C  L  H  R  L  W  C  G  Y  F  R  V  F  C  L  Y  T  S  A  C  S  I  V  C  S  W  E  I  P  V  I  N  C  W  V  *  I  G  F  I  F  *  T  G  E  V  E  V  S  S  *  V  K  T  R  G  F  V  K  D  S  L  R  R  Q  K  L  C  L  I  S  F  V  V  N  L  M  I  *  Y  E  K  S  A  A  I  A  C  F  H  L  V  I  F  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32528" stop="32328"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAVIGPKSGSQTDFSVVKKNNYSLTDNMCLCLFSLFPACTVCGVVISECSACTHLLAALFALGKSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="47558" PGL_stop="45855"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47558" e_stop="47519"/>
            <exon e_start="47012" e_stop="46651"/>
            <exon e_start="46550" e_stop="46507"/>
            <exon e_start="46417" e_stop="46203"/>
            <exon e_start="46117" e_stop="45993"/>
            <exon e_start="45877" e_stop="45855"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.992"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47558" e_stop="47519" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.883">
            <gDNA_intron_boundary i_start="47518" i_stop="47013" i_length="506"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47012" e_stop="46651" e_length="362"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46650" i_stop="46551" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46550" e_stop="46507" e_length="44"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.967">
            <gDNA_intron_boundary i_start="46506" i_stop="46418" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46417" e_stop="46203" e_length="215"/>
          </exon>
          <intron i_serial="4" don_prob="0.960" acc_prob="0.995">
            <gDNA_intron_boundary i_start="46202" i_stop="46118" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="46117" e_stop="45993" e_length="125"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="45992" i_stop="45878" i_length="115"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="45877" e_stop="45855" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47558" stop="47519"/>
              <exon start="47012" stop="46651"/>
              <exon start="46550" stop="46507"/>
              <exon start="46417" stop="46203"/>
              <exon start="46117" stop="45993"/>
              <exon start="45877" stop="45855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47557" stop="47519"/>
              <exon start="47012" stop="46651"/>
              <exon start="46550" stop="46507"/>
              <exon start="46417" stop="46203"/>
              <exon start="46117" stop="46064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332428" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCTGTTACACCCCTTGATCTTGTCAAGTGTAACATGCAG : ATCGATCCTGCAAAATACAAGAGCATTTCCTCTGGTTTTGGTGTTCTGCTTAAGGAGCAGGGTGCTAGAGGCTTCTTCAGGGGATGGGTGCCTACGTTGCTCGGTTACAGCGCCCAGGGAGCTTGCAAATATGGATTCTATGAATATTTCAAGAAGTATTACACAGACCTTGCTGGGCCTGAGAATGCTGCCAAGTACAAAACTTTGATTTTCCTTGCTGGTTCTGCTTCTGCTGAAGTTATTGCTGATGTTGCTCTCTGCCCATTTGAGGCTGTCAAAGTTCGCGTTCAGACTCAGCCTGGTTTTGCCAGAGGCTTGTCTGACGGACTTCCCAAATTTGTTAGGGCTGAGGGAGCCTCTGG : GCTGTATAAGGGGCTTGTTCCTCTCTGGGGACGACAGATTCCGT : ACACCATGATGAAGTTTGCATCATTTGAAACAATTGTGGAACAACTCTACAAAAATGTCATCCCAACACCAAAAGACCAATGCAGTAAATCAACGCAGCTCGGTGTGAGCTTTGCTGGTGGATATTTAGCTGGTATTCTTTGTGCTATTGTGTCACACCCTGCTGATAACCTGGTTTCTTTCCTAAACAACGCAAAGGGTGCAACTGTTGGCGAT : GCTGTGAACAAGCTAGGTGTGATGGGTCTTTGTACTCGCGGTCTTCCTATTCGTATAGTCATGATTGGTACACTCACTGGAGCACAATGGGGTATCTATGACTCTTTCAAAGTTTTCGTTGGACT : GCCAACGACTGGTGGTGCAGCTC</gDNA_template>
            <first_frame> G  C  Y  T  P  *  S  C  Q  V  *  H  A   : D  R  S  C  K  I  Q  E  H  F  L  W  F  W  C  S  A  *  G  A  G  C  *  R  L  L  Q  G  M  G  A  Y  V  A  R  L  Q  R  P  G  S  L  Q  I  W  I  L  *  I  F  Q  E  V  L  H  R  P  C  W  A  *  E  C  C  Q  V  Q  N  F  D  F  P  C  W  F  C  F  C  *  S  Y  C  *  C  C  S  L  P  I  *  G  C  Q  S  S  R  S  D  S  A  W  F  C  Q  R  L  V  *  R  T  S  Q  I  C  *  G  *  G  S  L  W  :  A  V  *  G  A  C  S  S  L  G  T  T  D  S  V :   H  H  D  E  V  C  I  I  *  N  N  C  G  T  T  L  Q  K  C  H  P  N  T  K  R  P  M  Q  *  I  N  A  A  R  C  E  L  C  W  W  I  F  S  W  Y  S  L  C  Y  C  V  T  P  C  *  *  P  G  F  F  P  K  Q  R  K  G  C  N  C  W  R   : C  C  E  Q  A  R  C  D  G  S  L  Y  S  R  S  S  Y  S  Y  S  H  D  W  Y  T  H  W  S  T  M  G  Y  L  *  L  F  Q  S  F  R  W  T  :  A  N  D  W  W  C  S   </first_frame>
            <second_frame>  A  V  T  P  L  D  L  V  K  C  N  M  Q  :  I  D  P  A  K  Y  K  S  I  S  S  G  F  G  V  L  L  K  E  Q  G  A  R  G  F  F  R  G  W  V  P  T  L  L  G  Y  S  A  Q  G  A  C  K  Y  G  F  Y  E  Y  F  K  K  Y  Y  T  D  L  A  G  P  E  N  A  A  K  Y  K  T  L  I  F  L  A  G  S  A  S  A  E  V  I  A  D  V  A  L  C  P  F  E  A  V  K  V  R  V  Q  T  Q  P  G  F  A  R  G  L  S  D  G  L  P  K  F  V  R  A  E  G  A  S  G :   L  Y  K  G  L  V  P  L  W  G  R  Q  I  P   : Y  T  M  M  K  F  A  S  F  E  T  I  V  E  Q  L  Y  K  N  V  I  P  T  P  K  D  Q  C  S  K  S  T  Q  L  G  V  S  F  A  G  G  Y  L  A  G  I  L  C  A  I  V  S  H  P  A  D  N  L  V  S  F  L  N  N  A  K  G  A  T  V  G  D  :  A  V  N  K  L  G  V  M  G  L  C  T  R  G  L  P  I  R  I  V  M  I  G  T  L  T  G  A  Q  W  G  I  Y  D  S  F  K  V  F  V  G  L :   P  T  T  G  G  A  A  </second_frame>
            <third_frame>   L  L  H  P  L  I  L  S  S  V  T  C  R :   S  I  L  Q  N  T  R  A  F  P  L  V  L  V  F  C  L  R  S  R  V  L  E  A  S  S  G  D  G  C  L  R  C  S  V  T  A  P  R  E  L  A  N  M  D  S  M  N  I  S  R  S  I  T  Q  T  L  L  G  L  R  M  L  P  S  T  K  L  *  F  S  L  L  V  L  L  L  L  K  L  L  L  M  L  L  S  A  H  L  R  L  S  K  F  A  F  R  L  S  L  V  L  P  E  A  C  L  T  D  F  P  N  L  L  G  L  R  E  P  L   : G  C  I  R  G  L  F  L  S  G  D  D  R  F  R  :  T  P  *  *  S  L  H  H  L  K  Q  L  W  N  N  S  T  K  M  S  S  Q  H  Q  K  T  N  A  V  N  Q  R  S  S  V  *  A  L  L  V  D  I  *  L  V  F  F  V  L  L  C  H  T  L  L  I  T  W  F  L  S  *  T  T  Q  R  V  Q  L  L  A  M :   L  *  T  S  *  V  *  W  V  F  V  L  A  V  F  L  F  V  *  S  *  L  V  H  S  L  E  H  N  G  V  S  M  T  L  S  K  F  S  L  D   : C  Q  R  L  V  V  Q  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47557" stop="47519"/>
                    <exon start="47012" stop="46651"/>
                    <exon start="46550" stop="46507"/>
                    <exon start="46417" stop="46203"/>
                    <exon start="46117" stop="45993"/>
                    <exon start="45877" stop="45856"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>807</number_coding_nucleotides>
                  <number_encoded_amino_acids>269</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVTPLDLVKCNMQIDPAKYKSISSGFGVLLKEQGARGFFRGWVPTLLGYSAQGACKYGFYEYFKKYYTDLAGPENAAKYKTLIFLAGSASAEVIADVALCPFEAVKVRVQTQPGFARGLSDGLPKFVRAEGASGLYKGLVPLWGRQIPYTMMKFASFETIVEQLYKNVIPTPKDQCSKSTQLGVSFAGGYLAGILCAIVSHPADNLVSFLNNAKGATVGDAVNKLGVMGLCTRGLPIRIVMIGTLTGAQWGIYDSFKVFVGLPTTGGAA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="52007" PGL_stop="50855"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52007" e_stop="51994"/>
            <exon e_start="51882" e_stop="51780"/>
            <exon e_start="51293" e_stop="51214"/>
            <exon e_start="51127" e_stop="50855"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.925" e_score="0.981"/>
          <exon-intron don_prob="0.946" acc_prob="0.950" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52007" e_stop="51994" e_length="14"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.954">
            <gDNA_intron_boundary i_start="51993" i_stop="51883" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="51882" e_stop="51780" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.941" acc_prob="0.925">
            <gDNA_intron_boundary i_start="51779" i_stop="51294" i_length="486"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51293" e_stop="51214" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.946" acc_prob="0.950">
            <gDNA_intron_boundary i_start="51213" i_stop="51128" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51127" e_stop="50855" e_length="273"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52007" stop="51994"/>
              <exon start="51882" stop="51780"/>
              <exon start="51293" stop="51214"/>
              <exon start="51127" stop="50855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319491" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGACAAGGAAAGAG : ATATTAGAAAAGAAGAAGAAGGTGCAAGAGATAATCAAAGCTGCTGTTTCTCAGAAAGACCTTTTTTCTTCCTTCCCAACTTTTCGCCATTACAAGAAAAAGG : ATTTGTCTGTGTACTTGGACTCGGGATGCGGAGATAGCCTTTCTTCTCCAGTAAAGCAGTATATTCAGAATCTCCTCAAG : GTATAGGCCTTTTACAGGTGAATATGGAGGCATCCTATGGAACAGAGTGGCCTGTAGAAGAGAAGGTGAAGCGCAGGGAGATGGTTTCTTCTGAAGCTCGTTATATATTTGTGTATGAGATATCAAATGTGGATGACATGCTCAAATTATCAAAGAAAGAAAGGTGTAATGCAGACGGTATGGATGATAAAGGTCATCTTGTGGCTTTTGTACATTACCGCTTCACCATCGAGGAAGAAATTCCTGTTCTTTATGTGTATGAATTACAGCTTG</gDNA_template>
            <first_frame> *  Q  G  K  R :   Y  *  K  R  R  R  R  C  K  R  *  S  K  L  L  F  L  R  K  T  F  F  L  P  S  Q  L  F  A  I  T  R  K  R  :  I  C  L  C  T  W  T  R  D  A  E  I  A  F  L  L  Q  *  S  S  I  F  R  I  S  S  R :   Y  R  P  F  T  G  E  Y  G  G  I  L  W  N  R  V  A  C  R  R  E  G  E  A  Q  G  D  G  F  F  *  S  S  L  Y  I  C  V  *  D  I  K  C  G  *  H  A  Q  I  I  K  E  R  K  V  *  C  R  R  Y  G  *  *  R  S  S  C  G  F  C  T  L  P  L  H  H  R  G  R  N  S  C  S  L  C  V  *  I  T  A   </first_frame>
            <second_frame>  D  K  E  R   : D  I  R  K  E  E  E  G  A  R  D  N  Q  S  C  C  F  S  E  R  P  F  F  F  L  P  N  F  S  P  L  Q  E  K  G :   F  V  C  V  L  G  L  G  M  R  R  *  P  F  F  S  S  K  A  V  Y  S  E  S  P  Q   : G  I  G  L  L  Q  V  N  M  E  A  S  Y  G  T  E  W  P  V  E  E  K  V  K  R  R  E  M  V  S  S  E  A  R  Y  I  F  V  Y  E  I  S  N  V  D  D  M  L  K  L  S  K  K  E  R  C  N  A  D  G  M  D  D  K  G  H  L  V  A  F  V  H  Y  R  F  T  I  E  E  E  I  P  V  L  Y  V  Y  E  L  Q  L  </second_frame>
            <third_frame>   T  R  K  E  :  I  L  E  K  K  K  K  V  Q  E  I  I  K  A  A  V  S  Q  K  D  L  F  S  S  F  P  T  F  R  H  Y  K  K  K   : D  L  S  V  Y  L  D  S  G  C  G  D  S  L  S  S  P  V  K  Q  Y  I  Q  N  L  L  K  :  V  *  A  F  Y  R  *  I  W  R  H  P  M  E  Q  S  G  L  *  K  R  R  *  S  A  G  R  W  F  L  L  K  L  V  I  Y  L  C  M  R  Y  Q  M  W  M  T  C  S  N  Y  Q  R  K  K  G  V  M  Q  T  V  W  M  I  K  V  I  L  W  L  L  Y  I  T  A  S  P  S  R  K  K  F  L  F  F  M  C  M  N  Y  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51256" stop="51214"/>
                    <exon start="51127" stop="50856"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFFSSKAVYSESPQGIGLLQVNMEASYGTEWPVEEKVKRREMVSSEARYIFVYEISNVDDMLKLSKKERCNADGMDDKGHLVAFVHYRFTIEEEIPVLYVYELQL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="55596" PGL_stop="52766"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55596" e_stop="55532"/>
            <exon e_start="55449" e_stop="55296"/>
            <exon e_start="53908" e_stop="53771"/>
            <exon e_start="53652" e_stop="53467"/>
            <exon e_start="53359" e_stop="53159"/>
            <exon e_start="53043" e_stop="52766"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.889" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55596" e_stop="55532" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55531" i_stop="55450" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55449" e_stop="55296" e_length="154"/>
          </exon>
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          <exon e_serial="3" e_score="1.000">
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          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53652" e_stop="53467" e_length="186"/>
          </exon>
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          <intron i_serial="5" don_prob="0.998" acc_prob="1.000">
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          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="53043" e_stop="52766" e_length="278"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213869" strand="+"/>
          </PGS_line>
          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213750" strand="+"/>
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          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727946" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E739143" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E342632" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E719620" strand="+"/>
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          <PGS_line>
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            </gDNA_exon_coordinates>
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          <PGS_line>
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            <referenceDNA id="SGN-E278125" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E368933" strand="+"/>
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          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247304" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E303463" strand="+"/>
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            <referenceDNA id="SGN-E315499" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E299972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725517" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="55574" stop="55532"/>
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              <exon start="53043" stop="52973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698563" strand="+"/>
          </PGS_line>
          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697452" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E728816" strand="+"/>
          </PGS_line>
          <PGS_line>
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            <referenceDNA id="SGN-E205550" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E267469" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E356102" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E700283" strand="+"/>
          </PGS_line>
          <PGS_line>
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            <referenceDNA id="SGN-E726488" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E295311" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E731368" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E730137" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E340928" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E310939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55562" stop="55532"/>
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            <referenceDNA id="SGN-E308315" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E334907" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E710440" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55437" stop="55296"/>
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            <referenceDNA id="SGN-E201600" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723230" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55429" stop="55296"/>
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            <referenceDNA id="SGN-E334803" strand="+"/>
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          <PGS_line>
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              <exon start="55408" stop="55296"/>
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            <referenceDNA id="SGN-E228210" strand="+"/>
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          <PGS_line>
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              <exon start="55349" stop="55296"/>
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            <referenceDNA id="SGN-E273436" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55349" stop="55296"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55348" stop="55296"/>
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              <exon start="53043" stop="52786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552114" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55328" stop="55296"/>
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            <referenceDNA id="SGN-E209416" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E242454" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E254121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53818" stop="53771"/>
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            <referenceDNA id="SGN-E286417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53780" stop="53771"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCCATAACCCCCAACCCCCCGTCTGAAAGCAGCTCCAATCTCTCATTCTCAAGATGGCTGTCGG : TAAGAACAAGAGGATTTCAAAGGGAAAGAAGGGAGGAAAGAAGAAGGCGGCCGATCCATATGCTAAGAAGGATTGGTATGACATTAAGGCACCATCAGTTTTTGAAATCAAGAACGTTGGCAAAACCCTCGTCACTAGGACTCAGGGTACTAAG : ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT : GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG : ATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAG : GTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGACCCGCTGAAGAAACAGTGGCTGAGGCAGAGACAGAGGTCCCTGGAGCTTAGACTTTGTTTCATTTTGGATTTCCTGTCTGAATATGGATTCTAGTCTTCTAAAATTTTGCATTTGTTTTAGTTGAGTTTGTCAAAGGCGTGACCTACCAAAATTTTGGATCTATTTATTTTGGTTATGCTTGATGTTAAACTATTCACAATTTAAGATATCGTTTTTCAGCTAAATCTTTTAA</gDNA_template>
            <first_frame> F  H  N  P  Q  P  P  V  *  K  Q  L  Q  S  L  I  L  K  M  A  V  G :   K  N  K  R  I  S  K  G  K  K  G  G  K  K  K  A  A  D  P  Y  A  K  K  D  W  Y  D  I  K  A  P  S  V  F  E  I  K  N  V  G  K  T  L  V  T  R  T  Q  G  T  K  :  I  A  S  E  G  L  K  H  R  V  F  E  V  S  L  A  D  L  Q  K  D  E  D  Q  A  F  R  K  I  R  L  R  A  E  D  V  Q  G  R  N  V  L  T  N  F  H  :  G  M  D  F  T  T  D  K  L  R  S  L  V  R  K  W  Q  T  L  I  E  A  H  V  D  V  K  T  T  D  S  Y  T  L  R  M  F  C  I  A  F  T  K  K  R  P  N  Q  Q  K  R  T  C  Y  A  Q  S  S  Q  I  R  Q  :  I  R  R  K  M  V  E  I  M  R  N  Q  A  S  S  C  D  L  K  E  L  V  A  K  F  I  P  E  S  I  G  R  E  I  E  K  A  T  S  S  I  F  P  L  Q  N  V  Y  I  R  K  V  K  I  L  K  A  P  K  F  D  L  G  K  L  M  E  :  V  H  G  D  Y  S  E  D  V  G  V  K  L  D  R  P  A  E  E  T  V  A  E  A  E  T  E  V  P  G  A  *  T  L  F  H  F  G  F  P  V  *  I  W  I  L  V  F  *  N  F  A  F  V  L  V  E  F  V  K  G  V  T  Y  Q  N  F  G  S  I  Y  F  G  Y  A  *  C  *  T  I  H  N  L  R  Y  R  F  S  A  K  S  F   </first_frame>
            <second_frame>  S  I  T  P  N  P  P  S  E  S  S  S  N  L  S  F  S  R  W  L  S   : V  R  T  R  G  F  Q  R  E  R  R  E  E  R  R  R  R  P  I  H  M  L  R  R  I  G  M  T  L  R  H  H  Q  F  L  K  S  R  T  L  A  K  P  S  S  L  G  L  R  V  L  R :   L  L  P  K  D  *  S  T  E  F  L  K  S  V  *  L  I  F  R  R  M  R  I  R  L  S  G  R  S  A  *  E  Q  K  M  C  K  G  G  M  S  S  Q  T  S  M :   G  W  T  S  Q  Q  T  S  *  G  L  W  C  A  S  G  R  L  *  L  R  L  M  W  M  S  R  L  Q  I  A  T  L  L  G  C  S  A  L  L  L  Q  R  S  V  Q  T  N  R  S  V  H  V  M  L  R  A  A  R  S  V  R :   S  V  A  R  W  L  R  S  *  E  T  K  Q  V  P  V  T  *  R  S  W  *  Q  S  S  S  L  N  Q  L  V  E  R  L  R  K  L  L  Q  A  F  F  H  S  K  M  F  I  F  A  K  *  R  S  *  R  P  L  N  S  I  L  A  S  *  W  R :   C  M  V  T  I  Q  K  M  L  V  *  S  W  I  D  P  L  K  K  Q  W  L  R  Q  R  Q  R  S  L  E  L  R  L  C  F  I  L  D  F  L  S  E  Y  G  F  *  S  S  K  I  L  H  L  F  *  L  S  L  S  K  A  *  P  T  K  I  L  D  L  F  I  L  V  M  L  D  V  K  L  F  T  I  *  D  I  V  F  Q  L  N  L  L  </second_frame>
            <third_frame>   P  *  P  P  T  P  R  L  K  A  A  P  I  S  H  S  Q  D  G  C  R  :  *  E  Q  E  D  F  K  G  K  E  G  R  K  E  E  G  G  R  S  I  C  *  E  G  L  V  *  H  *  G  T  I  S  F  *  N  Q  E  R  W  Q  N  P  R  H  *  D  S  G  Y  *   : D  C  F  R  R  T  E  A  Q  S  F  *  S  Q  F  S  *  S  S  E  G  *  G  S  G  F  Q  E  D  P  L  E  S  R  R  C  A  R  E  E  C  P  H  K  L  P   : W  D  G  L  H  N  R  Q  V  E  V  S  G  A  Q  V  A  D  F  D  *  G  S  C  G  C  Q  D  Y  R  *  L  H  S  *  D  V  L  H  C  F  Y  K  E  A  S  K  P  T  E  A  Y  M  L  C  S  E  Q  P  D  P  S   : D  P  S  Q  D  G  *  D  H  E  K  P  S  K  F  L  *  P  E  G  V  G  S  K  V  H  P  *  I  N  W  *  R  D  *  E  S  Y  F  K  H  F  S  T  P  K  C  L  Y  S  Q  S  E  D  P  E  G  P  *  I  R  S  W  Q  A  D  G   : G  A  W  *  L  F  R  R  C  W  C  E  V  G  S  T  R  *  R  N  S  G  *  G  R  D  R  G  P  W  S  L  D  F  V  S  F  W  I  S  C  L  N  M  D  S  S  L  L  K  F  C  I  C  F  S  *  V  C  Q  R  R  D  L  P  K  F  W  I  Y  L  F  W  L  C  L  M  L  N  Y  S  Q  F  K  I  S  F  F  S  *  I  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55569" stop="55532"/>
                    <exon start="55449" stop="55296"/>
                    <exon start="53908" stop="53771"/>
                    <exon start="53652" stop="53467"/>
                    <exon start="53359" stop="53159"/>
                    <exon start="53043" stop="52948"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>810</number_coding_nucleotides>
                  <number_encoded_amino_acids>270</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQLQSLILKMAVGKNKRISKGKKGGKKKAADPYAKKDWYDIKAPSVFEIKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQKDEDQAFRKIRLRAEDVQGRNVLTNFHGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDSYTLRMFCIAFTKKRPNQQKRTCYAQSSQIRQIRRKMVEIMRNQASSCDLKELVAKFIPESIGREIEKATSSIFPLQNVYIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKLDRPAEETVAEAETEVPGA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="53999" e_stop="53997"/>
            <exon e_start="53908" e_stop="53771"/>
            <exon e_start="53652" e_stop="53467"/>
            <exon e_start="53359" e_stop="53159"/>
            <exon e_start="53043" e_stop="52775"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.889" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53999" e_stop="53997" e_length="3"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.975">
            <gDNA_intron_boundary i_start="53996" i_stop="53909" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53908" e_stop="53771" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.889" acc_prob="1.000">
            <gDNA_intron_boundary i_start="53770" i_stop="53653" i_length="118"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53652" e_stop="53467" e_length="186"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.972">
            <gDNA_intron_boundary i_start="53466" i_stop="53360" i_length="107"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53359" e_stop="53159" e_length="201"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="53158" i_stop="53044" i_length="115"/>
          </intron>
          <exon e_serial="5" e_score="0.981">
            <gDNA_exon_boundary e_start="53043" e_stop="52775" e_length="269"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53999" stop="53997"/>
              <exon start="53908" stop="53771"/>
              <exon start="53652" stop="53467"/>
              <exon start="53359" stop="53159"/>
              <exon start="53043" stop="52796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53908" stop="53771"/>
              <exon start="53652" stop="53467"/>
              <exon start="53359" stop="53159"/>
              <exon start="53043" stop="52992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53851" stop="53771"/>
              <exon start="53652" stop="53467"/>
              <exon start="53359" stop="53159"/>
              <exon start="53043" stop="52985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53818" stop="53771"/>
              <exon start="53652" stop="53467"/>
              <exon start="53359" stop="53159"/>
              <exon start="53043" stop="53002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53780" stop="53771"/>
              <exon start="53652" stop="53467"/>
              <exon start="53359" stop="53159"/>
              <exon start="53043" stop="52775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAG : ATTGCTTCCGAAGGACTGAAGCACAGAGTTTTTGAAGTCAGTTTAGCTGATCTTCAGAAGGATGAGGATCAGGCTTTCAGGAAGATCCGCTTGAGAGCAGAAGATGTGCAAGGGAGGAATGTCCTCACAAACTTCCAT : GGGATGGACTTCACAACAGACAAGTTGAGGTCTCTGGTGCGCAAGTGGCAGACTTTGATTGAGGCTCATGTGGATGTCAAGACTACAGATAGCTACACTCTTAGGATGTTCTGCATTGCTTTTACAAAGAAGCGTCCAAACCAACAGAAGCGTACATGTTATGCTCAGAGCAGCCAGATCCGTCAG : ATCCGTCGCAAGATGGTTGAGATCATGAGAAACCAAGCAAGTTCCTGTGACCTGAAGGAGTTGGTAGCAAAGTTCATCCCTGAATCAATTGGTAGAGAGATTGAGAAAGCTACTTCAAGCATTTTTCCACTCCAAAATGTTTATATTCGCAAAGTGAAGATCCTGAAGGCCCCTAAATTCGATCTTGGCAAGCTGATGGAG : GTGCATGGTGACTATTCAGAAGATGTTGGTGTGAAGTTGGATCGACCCGCTGAAGAAACAGTGGCTGAGGCAGAGACAGAGGTCCCTGGAGCTTAGACTTTGTTTCATTTTGGATTTCCTGTCTGAATATGGATTCTAGTCTTCTAAAATTTTGCATTTGTTTTAGTTGAGTTTGTCAAAGGCGTGACCTACCAAAATTTTGGATCTATTTATTTTGGTTATGCTTGATGTTAAACTATTCACAATTTAAGATATCGTTTTTCAGCTAA</gDNA_template>
            <first_frame> K  :  I  A  S  E  G  L  K  H  R  V  F  E  V  S  L  A  D  L  Q  K  D  E  D  Q  A  F  R  K  I  R  L  R  A  E  D  V  Q  G  R  N  V  L  T  N  F  H  :  G  M  D  F  T  T  D  K  L  R  S  L  V  R  K  W  Q  T  L  I  E  A  H  V  D  V  K  T  T  D  S  Y  T  L  R  M  F  C  I  A  F  T  K  K  R  P  N  Q  Q  K  R  T  C  Y  A  Q  S  S  Q  I  R  Q  :  I  R  R  K  M  V  E  I  M  R  N  Q  A  S  S  C  D  L  K  E  L  V  A  K  F  I  P  E  S  I  G  R  E  I  E  K  A  T  S  S  I  F  P  L  Q  N  V  Y  I  R  K  V  K  I  L  K  A  P  K  F  D  L  G  K  L  M  E  :  V  H  G  D  Y  S  E  D  V  G  V  K  L  D  R  P  A  E  E  T  V  A  E  A  E  T  E  V  P  G  A  *  T  L  F  H  F  G  F  P  V  *  I  W  I  L  V  F  *  N  F  A  F  V  L  V  E  F  V  K  G  V  T  Y  Q  N  F  G  S  I  Y  F  G  Y  A  *  C  *  T  I  H  N  L  R  Y  R  F  S  A   </first_frame>
            <second_frame>  R :   L  L  P  K  D  *  S  T  E  F  L  K  S  V  *  L  I  F  R  R  M  R  I  R  L  S  G  R  S  A  *  E  Q  K  M  C  K  G  G  M  S  S  Q  T  S  M :   G  W  T  S  Q  Q  T  S  *  G  L  W  C  A  S  G  R  L  *  L  R  L  M  W  M  S  R  L  Q  I  A  T  L  L  G  C  S  A  L  L  L  Q  R  S  V  Q  T  N  R  S  V  H  V  M  L  R  A  A  R  S  V  R :   S  V  A  R  W  L  R  S  *  E  T  K  Q  V  P  V  T  *  R  S  W  *  Q  S  S  S  L  N  Q  L  V  E  R  L  R  K  L  L  Q  A  F  F  H  S  K  M  F  I  F  A  K  *  R  S  *  R  P  L  N  S  I  L  A  S  *  W  R :   C  M  V  T  I  Q  K  M  L  V  *  S  W  I  D  P  L  K  K  Q  W  L  R  Q  R  Q  R  S  L  E  L  R  L  C  F  I  L  D  F  L  S  E  Y  G  F  *  S  S  K  I  L  H  L  F  *  L  S  L  S  K  A  *  P  T  K  I  L  D  L  F  I  L  V  M  L  D  V  K  L  F  T  I  *  D  I  V  F  Q  L  </second_frame>
            <third_frame>    : D  C  F  R  R  T  E  A  Q  S  F  *  S  Q  F  S  *  S  S  E  G  *  G  S  G  F  Q  E  D  P  L  E  S  R  R  C  A  R  E  E  C  P  H  K  L  P   : W  D  G  L  H  N  R  Q  V  E  V  S  G  A  Q  V  A  D  F  D  *  G  S  C  G  C  Q  D  Y  R  *  L  H  S  *  D  V  L  H  C  F  Y  K  E  A  S  K  P  T  E  A  Y  M  L  C  S  E  Q  P  D  P  S   : D  P  S  Q  D  G  *  D  H  E  K  P  S  K  F  L  *  P  E  G  V  G  S  K  V  H  P  *  I  N  W  *  R  D  *  E  S  Y  F  K  H  F  S  T  P  K  C  L  Y  S  Q  S  E  D  P  E  G  P  *  I  R  S  W  Q  A  D  G   : G  A  W  *  L  F  R  R  C  W  C  E  V  G  S  T  R  *  R  N  S  G  *  G  R  D  R  G  P  W  S  L  D  F  V  S  F  W  I  S  C  L  N  M  D  S  S  L  L  K  F  C  I  C  F  S  *  V  C  Q  R  R  D  L  P  K  F  W  I  Y  L  F  W  L  C  L  M  L  N  Y  S  Q  F  K  I  S  F  F  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53999" stop="53997"/>
                    <exon start="53908" stop="53771"/>
                    <exon start="53652" stop="53467"/>
                    <exon start="53359" stop="53159"/>
                    <exon start="53043" stop="52948"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIASEGLKHRVFEVSLADLQKDEDQAFRKIRLRAEDVQGRNVLTNFHGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDSYTLRMFCIAFTKKRPNQQKRTCYAQSSQIRQIRRKMVEIMRNQASSCDLKELVAKFIPESIGREIEKATSSIFPLQNVYIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKLDRPAEETVAEAETEVPGA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="56221" PGL_stop="56069"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56221" e_stop="56069"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="56221" e_stop="56069" e_length="153"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56221" stop="56069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392727" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAATGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATATAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCATTGCAATTATATAATTCGCAATT</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  R  F  I  *  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  I  A  I  I  *  F  A  I </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  N  V  *  Q  E  D  I  C  F  S  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q   </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  M  Y  S  K  K  I  Y  V  F  L  S  L  Y  I  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  Y  I  I  R  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0222J18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="67017" PGL_stop="67431"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67017" e_stop="67431"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="67017" e_stop="67431" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67017" stop="67431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67175" stop="67431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224329" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCCTTGTTGAACAGTTTTTACCATTCGTGAAGCAGTTCTAAACTTCTAGTAATGGCAATAGTGATTGTTCAATAACAACATACCCAGTGCAATTCTACAAGTGGGGTCTGGAGAGGGTAGAGCGTGTACAAACCTTACCCCTACCTTAGAAGATAGAGAGATTGTTTCTCATAGACCCTTGGCTCAAGAAGAAGCATATCAAAGCAGTTCGGGAATAGTGATTATTGTGTATGGTAAATACACTAGAACATCAGAAATATTCAAACAAAACCACCAGCTAGCAGAACGCAGTTTACTGGATAAAGGAACAGTGAAAAAAAGAAATTAAGAGCCTAGAATTTGGGTCCGAAATGATGAGGAAAACTTGTATACTTACTAAAGTTTCGTGTTATAGGTTTCTCTTTTGTCGCTACA</gDNA_template>
            <first_frame> S  L  V  E  Q  F  L  P  F  V  K  Q  F  *  T  S  S  N  G  N  S  D  C  S  I  T  T  Y  P  V  Q  F  Y  K  W  G  L  E  R  V  E  R  V  Q  T  L  P  L  P  *  K  I  E  R  L  F  L  I  D  P  W  L  K  K  K  H  I  K  A  V  R  E  *  *  L  L  C  M  V  N  T  L  E  H  Q  K  Y  S  N  K  T  T  S  *  Q  N  A  V  Y  W  I  K  E  Q  *  K  K  E  I  K  S  L  E  F  G  S  E  M  M  R  K  T  C  I  L  T  K  V  S  C  Y  R  F  L  F  C  R  Y  </first_frame>
            <second_frame>  A  L  L  N  S  F  Y  H  S  *  S  S  S  K  L  L  V  M  A  I  V  I  V  Q  *  Q  H  T  Q  C  N  S  T  S  G  V  W  R  G  *  S  V  Y  K  P  Y  P  Y  L  R  R  *  R  D  C  F  S  *  T  L  G  S  R  R  S  I  S  K  Q  F  G  N  S  D  Y  C  V  W  *  I  H  *  N  I  R  N  I  Q  T  K  P  P  A  S  R  T  Q  F  T  G  *  R  N  S  E  K  K  K  L  R  A  *  N  L  G  P  K  *  *  G  K  L  V  Y  L  L  K  F  R  V  I  G  F  S  F  V  A  T </second_frame>
            <third_frame>   P  C  *  T  V  F  T  I  R  E  A  V  L  N  F  *  *  W  Q  *  *  L  F  N  N  N  I  P  S  A  I  L  Q  V  G  S  G  E  G  R  A  C  T  N  L  T  P  T  L  E  D  R  E  I  V  S  H  R  P  L  A  Q  E  E  A  Y  Q  S  S  S  G  I  V  I  I  V  Y  G  K  Y  T  R  T  S  E  I  F  K  Q  N  H  Q  L  A  E  R  S  L  L  D  K  G  T  V  K  K  R  N  *  E  P  R  I  W  V  R  N  D  E  E  N  L  Y  T  Y  *  S  F  V  L  *  V  S  L  L  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67082" stop="67345"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFNNNIPSAILQVGSGEGRACTNLTPTLEDREIVSHRPLAQEEAYQSSSGIVIIVYGKYTRTSEIFKQNHQLAERSLLDKGTVKKRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="71011" PGL_stop="72352"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71011" e_stop="71221"/>
            <exon e_start="71512" e_stop="71685"/>
            <exon e_start="72320" e_stop="72352"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71011" e_stop="71221" e_length="211"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71222" i_stop="71511" i_length="290"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71512" e_stop="71685" e_length="174"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71686" i_stop="72319" i_length="634"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72320" e_stop="72352" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71011" stop="71221"/>
              <exon start="71512" stop="71685"/>
              <exon start="72320" stop="72352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200296" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCATGTGCCCATTAAGATGTCTGGTTTTTTTGAGGAACCAAACAATAATATAACAAGTAGTAGTACACTACCAAATTGTGTTTCTCAATTTTATTTGCAAGAGCTTTCTGTCAATATGAGTAATAATGTTCATGAAATTAGCCATAATGAACCTTCTCATGTGACAAACAAAACCAATTCTTCCTCCCTCTGCTCTACTCAATCTAAG : AATGTAAGAGACGGTGATGATGGGAAAGGGCAAAAGAAAAGAAATGGTAATGTAAAAAGAGAGAAAAAAACAAAGGAAAATAAGAAGAAAGCCCCTGAAGAGGCCCCTACAGGATATGTTCATGTTAGAGCAAGGAGGGGCCAGGCAACTGACAGTCACAGTCTTGCTGAAAGG : GTGAGGAGAGAGAAAATAAGTGAAAGGATGAAG</gDNA_template>
            <first_frame> F  S  C  A  H  *  D  V  W  F  F  *  G  T  K  Q  *  Y  N  K  *  *  Y  T  T  K  L  C  F  S  I  L  F  A  R  A  F  C  Q  Y  E  *  *  C  S  *  N  *  P  *  *  T  F  S  C  D  K  Q  N  Q  F  F  L  P  L  L  Y  S  I  *   : E  C  K  R  R  *  *  W  E  R  A  K  E  K  K  W  *  C  K  K  R  E  K  N  K  G  K  *  E  E  S  P  *  R  G  P  Y  R  I  C  S  C  *  S  K  E  G  P  G  N  *  Q  S  Q  S  C  *  K   : G  E  E  R  E  N  K  *  K  D  E  </first_frame>
            <second_frame>  F  H  V  P  I  K  M  S  G  F  F  E  E  P  N  N  N  I  T  S  S  S  T  L  P  N  C  V  S  Q  F  Y  L  Q  E  L  S  V  N  M  S  N  N  V  H  E  I  S  H  N  E  P  S  H  V  T  N  K  T  N  S  S  S  L  C  S  T  Q  S  K  :  N  V  R  D  G  D  D  G  K  G  Q  K  K  R  N  G  N  V  K  R  E  K  K  T  K  E  N  K  K  K  A  P  E  E  A  P  T  G  Y  V  H  V  R  A  R  R  G  Q  A  T  D  S  H  S  L  A  E  R  :  V  R  R  E  K  I  S  E  R  M  K </second_frame>
            <third_frame>   F  M  C  P  L  R  C  L  V  F  L  R  N  Q  T  I  I  *  Q  V  V  V  H  Y  Q  I  V  F  L  N  F  I  C  K  S  F  L  S  I  *  V  I  M  F  M  K  L  A  I  M  N  L  L  M  *  Q  T  K  P  I  L  P  P  S  A  L  L  N  L  R :   M  *  E  T  V  M  M  G  K  G  K  R  K  E  M  V  M  *  K  E  R  K  K  Q  R  K  I  R  R  K  P  L  K  R  P  L  Q  D  M  F  M  L  E  Q  G  G  A  R  Q  L  T  V  T  V  L  L  K  G :   *  G  E  R  K  *  V  K  G  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0222J18.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71012" stop="71221"/>
                    <exon start="71512" stop="71685"/>
                    <exon start="72320" stop="72352"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHVPIKMSGFFEEPNNNITSSSTLPNCVSQFYLQELSVNMSNNVHEISHNEPSHVTNKTNSSSLCSTQSKNVRDGDDGKGQKKRNGNVKREKKTKENKKKAPEEAPTGYVHVRARRGQATDSHSLAERVRREKISERMK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 381 chains have been computed
$ 
$ memory statistics:
$ 1417488 bytes spliced alignments in total
$ 236 spliced alignments have been stored
$ 6006 bytes was the average size of a spliced alignment
$ 30488 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1905 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 395 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 14:28:37
-->
